Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039660
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 475396
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Found at i:4080 original size:11 final size:12
Alignment explanation
Indices: 4052--4083 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
4042 ATAATTTAAT
4052 ATTTCATAAAGA
1 ATTTCATAAAGA
4064 ATTTCATAAAG-
1 ATTTCATAAAGA
4075 ATTTCATAA
1 ATTTCATAA
4084 CCTCAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (12 bp):
ATTTCATAAAGA
Left flanking sequence: Indices 3552 -- 4051
GAAAGAACAGATAAAATAAATGATATGATTCAACCTCAAACCCATTTGAATGTAGCCGATAACAG
CGGAGCCCGCGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCGACGATATGCTTATATTG
GTGACATTGTTGTTGCTGTAATAAAGGAAGCTGTACCAAATACGCCTTTAGAAAGATCAGAAGTG
ATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAACGGTATGATAATACACTA
TAATGATAATGCTGCGGTCGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGCG
CAATCGCCAGAGAATTGAGACAGTATAATTTCACTAAAATAGTTTCCTTAGCGCCCGAGGTATTA
TAAGACGAGACCCTGACATAGATATATTATTTGTGAATGAAATAGATTCATTAATAGATTATATC
TCACACATATACCTTTTGTAGTAATTATTATATATATAATTTAAT
Right flanking sequence: Indices 4084 -- 4583
CCTCAAAAGAGATATCAATATTAGATATTTTATTGAATAAAAAATAGAAAAAGCAGCACGTTGAT
TATATCAAAAATCAGGGCAACAATCATTTTCGTTTATCATGAGTAAGGACACCATCGCTGACGTA
ATAACCTCTATACGAAATGTTGACATGAATAGAAAAGGAATGGTTCAAATACCATCTACTAACAT
CAACAAAAACATTGTTAAAATACTTTTACGAGAGGGTTTTATTGAAAACGTGAGAAAACATAGGG
AAGGCGACAAATATTTTTTAGTTTTAACTCTACGGTATAGAAGAAATAGGAAAGGATCATATAAA
ACTGTTTTAATTTTAAAACGGATCAGTACACCCGGTCTACGAATTTATTCTAATTATCAACGAAT
TCCTAGAATTTTAGGAGGAATGGGAATTGTAATTCTTTCTACTTCTAGAGGTATAATGACAGATC
GAGAGGCTCGATTACAAAGAATCGGTGGAGAAGTTTTATGTTATA
Found at i:6016 original size:27 final size:26
Alignment explanation
Indices: 5955--6017 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 26
5945 ATGTAAAACG
*
5955 AAAAAAATAAACATTGAAGAGATTTC
1 AAAAAAATAAACATTCAAGAGATTTC
* *
5981 AAGAGAAATAAACAATTCAAG-GATTTG
1 AA-AAAAATAAAC-ATTCAAGAGATTTC
6008 ATAAAAAATA
1 A-AAAAAATA
6018 TAAAATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
26 2 0.07
27 21 0.70
28 7 0.23
ACGTcount: A:0.59, C:0.06, G:0.13, T:0.22
Consensus pattern (26 bp):
AAAAAAATAAACATTCAAGAGATTTC
Left flanking sequence: Indices 5455 -- 5954
TGACATAAAATGGATATATCCATAGATCTTGGACTTCGATTTATAAATATTTATAAATAAAAATA
TAATAAAGTATGGCAAAACCTATACCAAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCGCG
TAAGCATGCTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGCTTCAACAATACCATTG
TGACTGTTACAGATGTACGGGGTCGGGTGATCTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAG
GGTACACGAAGGGGGACACCATTCGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGCAGC
GGATCAAGGCATGCAACGAGCGGAAGTCATGATAAAAGGTCCCGGTCTCGGAAGAGATGCGGCAT
TAAGAGCTATTCGTAGAAGTGGTATACTATTAAAATTTATACGGGATGTAACCCCTATGCCACAT
AATGGATGTAGGTCCCCTAAAAAAAGACGTGTGTAATGTAAAACG
Right flanking sequence: Indices 6018 -- 6517
TAAAATATTTTACTATGGTTCGAGAGAAAGTAAGAGTATCTACTCGGACACTACAACTACAGTGG
AAGTGTGTTGAATCAAGAGTAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACT
TATGAAAGGCCAAGCCGATACGATAGGCATTGCGATGCGAAGAGTTTTGCTCGGAGAAATAGAGG
GAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGTAGGTATT
CAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGG
AACTCGTGACGCGTCTATTTGTGTCAAGGGTCCAGGATATGTAACTGCTCAAGACATCATTTTAC
CACCTTCTGTGGAAATCGTTGATAATACACAACATATAGCAAACCTAACAGAACCTATTAATTTG
TGTATTGGATTACAAATCGAAAGGAATCGCGGATATCGTATAAAA
Found at i:10893 original size:1 final size:1
Alignment explanation
Indices: 10889--10913 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
10879 TTTTTTTTTT
10889 GGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGG
10914 TCATCTCCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 10389 -- 10888
GGACCAGATCTAGAACTACCCTCAACGGTTTGTGTAGCCATAAATCCTATTTTTTTATTCATTGA
GATCTGTTGACTTTGTAGACTATTCCGCTGTAAATAAAAGATCTTATCCTATAGATCCATTGTGG
TCTTGAAATTATATAATAATGGAAACAGCAACCCTAGTTGCCATCTCTATATCTGGTTTACTTGT
AAGTTTTACTGGGTATGCCTTATATACTGCTTTTGGGCAACCCTCTCAACAACTAAGAGATCCAT
TCGAAGAACATGGGGACTAATTGAAGTAATGAGCCTCCCAATATGTTGGGAGGCTCATTACTTCA
ATTGAGATAATGAAAAATCATTTCATCTTTTTAGTTGGAACTTTAGGGGGTTCTCTAAAAAAGAT
AGCGAAAAAAATGATTCCTAAAGTCGAGACTAAGAGGAATGTATAAACCAATGCTTCCATAGATT
TGATCGTGGTTTACAATTATAACTTTCATACCTGTTTTTTTTTTT
Right flanking sequence: Indices 10914 -- 11413
TCATCTCCCGGATAAAGAAAAAGAAAGAACAAGAGTAAAACATAATGCAATGATTCAGATCAAGA
TTTACCCGGTTCCTTATGTCAAATTCAAATCACAACAAAAAAAATCGAAAAGGAACAAAAGAATG
TTCTATCAGACTGCTTGTCTTCTTGTAGTTGGATCTCCAAGTTTTTGGAATGCTCCAAATTCTAC
TTGAGCATCCAAATCTGGGTCGATACCAGCAAAAACATCTCTGAACAAAGTTCTAGCACCATGCC
AAATGTGTCCGAAAAAGAAGAGCAGAGCAAACGAAGCATGTCCAAAAGTAAACCAACCCCTTGGA
CTGCTACGAAAAACGCCATCCGATTTCAAAGTAGCACGATCTAATTCAAAAATTTCACCCAATTG
AGCACGTCTAGCATATTTTTTCACAGTAGCGGGATCGCTATAACTGACTCCATTGAGTTCGCCAC
CATAGAACTCAACAGTTACACCCACTTGTTCGACACTATACTTCG
Found at i:12834 original size:16 final size:15
Alignment explanation
Indices: 12810--12840 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
12800 ACCTACCCCC
12810 TTTTTTATTTCTATG
1 TTTTTTATTTCTATG
12825 TTTTTATATTTCTATG
1 TTTTT-TATTTCTATG
12841 AGTCTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.71
Consensus pattern (15 bp):
TTTTTTATTTCTATG
Left flanking sequence: Indices 12310 -- 12809
CCCGGATTCGTTATAGTTCCCCCTGCGATACTCCAACCCCCCCATGAATTGGTTATTCCTAAACG
AGTCATGAAGGGTATAACGAACATACCCTGTCTCCACATTGGGTCAAGAACAGGATCAGAAGGAT
CAAAAACTGCTAATTCATATAGAGCCATCGAACCGGCCCAACCAGCAACCAAAGCTGTATGCATT
ATATGGACAGAAAGCAAACGGCCGGGATCATTTAATACAACGGTATGAACACGATACCAAGGCAA
ACCCATGAAAATACCTCTTATATCAACAAAAAATAGACACTATGTAACTTTATTGCACTGGAAAA
AACGATATACTATGGACCCTCCCCTTTCAGTAGATTATCGCGGGTAAAGGATTCATATTTGTTCT
AGTTTTTTAGTAATAATGGAACAATTATATTCGTAGGAACAAAAAGAAGCAGATCTATTCTATAC
CCGATAAGTAACAATACGCAATGGTAGGGGGGTTGACCTACCCCC
Right flanking sequence: Indices 12841 -- 13340
AGTCTTTTTATCAGGGAATGCAGACATATTCGTTTATCACTCAAAGGACCTATTTGTAAGAACTT
TCCTTTATTTCATTTGGTCTTCCTTTTTTATTTATGATTTATAAATTAAATACAATATGATAAAG
ACAAATCATTTTTAACACAATAAACCCATTTATTTTTACGTTTCCACATCAAAGTGAGATATACT
GTTCCATTCTTTTTCTCCATTTAATGCCTATTGGTGTTCCAAAAGTACCCTTTCGAAGTCCTGGA
GAGGAAGATGCATCTTGGGTTGACATATAGTGCGACTTGTCAGATATATTGGGTCATATGGGATT
TCCCCGGTCTCTCCCCCGATCGAGATATACTCTCTTTCACCTCCAAAAAAAGATTAATTGAATCA
TCAAAAATTTTGAGCGTGAAGTGTACTGAAGTGCAATTAGATCGATTTTTTGTTTGGTTGGGGGG
GTATCCAGATTACTATTCTAAATTTCGAATAATTTATGGTTGGCT
Found at i:13962 original size:101 final size:101
Alignment explanation
Indices: 13787--13988 Score: 404
Period size: 101 Copynumber: 2.0 Consensus size: 101
13777 AAAAAAAGAC
13787 CTTTCCTTTCTTTAGAAGTTCGGAAAAGTCCATTATGAAAAAGGAAAGAGGGTTGAAATCTACAC
1 CTTTCCTTTCTTTAGAAGTTCGGAAAAGTCCATTATGAAAAAGGAAAGAGGGTTGAAATCTACAC
13852 ATTGATTCCTTTTTGCGATTTTTGTTTGGTGAACTG
66 ATTGATTCCTTTTTGCGATTTTTGTTTGGTGAACTG
13888 CTTTCCTTTCTTTAGAAGTTCGGAAAAGTCCATTATGAAAAAGGAAAGAGGGTTGAAATCTACAC
1 CTTTCCTTTCTTTAGAAGTTCGGAAAAGTCCATTATGAAAAAGGAAAGAGGGTTGAAATCTACAC
13953 ATTGATTCCTTTTTGCGATTTTTGTTTGGTGAACTG
66 ATTGATTCCTTTTTGCGATTTTTGTTTGGTGAACTG
13989 TATGCATCAA
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 101 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (101 bp):
CTTTCCTTTCTTTAGAAGTTCGGAAAAGTCCATTATGAAAAAGGAAAGAGGGTTGAAATCTACAC
ATTGATTCCTTTTTGCGATTTTTGTTTGGTGAACTG
Left flanking sequence: Indices 13287 -- 13786
GTTGGGGGGGTATCCAGATTACTATTCTAAATTTCGAATAATTTATGGTTGGCTTGGTTAGACCA
ATAAAATGAAGCATCCAGGCTCTGTTTAGAAAAAACCAATTGGTCATATATCTACGATTACTACT
TTTATCATATCATCATATATTTGGCAGAAAATGTGAAACAAGAAATTCAGAAAAAACGGGGGGTT
CATAGCAAAAAGATGTGGTATTGCAGTATTTGTCCTATATGTGCAAATCCAAATCGAGCAGATCT
TTCTTTACCCAGAGTCGAACAGAAACCTAAAAGAATTGAAGAAGCCCATTCAGAAACAAGAAAAT
GACATTGCGATTTCGATTCGATCTCGATGAAAACAATACATCAATGAAAAGTTAGTTCAATATGG
TTAGTACTTTATCTATTTTATTAGATTCTATCTATATTAATAGAATAGATAAAGGGGTCAAAAAA
AGAAAAGTCGTCTTTCTTTTCTTGAAAAATGTAAGAAAAAAAGAC
Right flanking sequence: Indices 13989 -- 14488
TATGCATCAAAAGGTGCATGTATGGCTCTTAGGTGATAAAATTTTATCCTAATCAATCGACTTTA
TCGAGAAAGATTACTTTTTTTAGGCCAAGAGGTTGATAGTGAAATATCGAATCAACTTATCGGCC
TTATGGTATATCTCAGTATAGAGGACGATAACCAAGATTTGTATCTGTTTATAAATTCTCCAGGC
GGATGGGTAATACCCGGAATAGCTATTTATGATACTATGCAATTTGTACAACCAGATGTACAGAC
CGTATGCATGGGATTAGCTGCTTCAATGGGATCCTTTATTTTGGCAGGAGGAGAAATTACCAAAC
GTCTAGCATTCCCTCACGCTTGGCGCCAATGAGTCTTTTTTTCCTCAAATAAAAAGACTATGCCT
TCGCCCTATGAATATTAAGTAATAATAGCATGGCACTTCGAGTTCGATATGCAATTTTTTTTTTT
TTTCAAAACCATTCGATTATGTATCGAAAGAGTAGTATGAAAAAG
Found at i:16918 original size:50 final size:50
Alignment explanation
Indices: 16848--16950 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
16838 TTGAAGAGTA
16848 ACTCTATTTCTTTTTTTAAGACTGATAGTAGTAGTTCTAGTGGTCAACTC
1 ACTCTATTTCTTTTTTTAAGACTGATAGTAGTAGTTCTAGTGGTCAACTC
16898 ACTCTATTTCTTTTTTTAAGACTGATAGTAGTAGTTCTAGTGGTCAACTC
1 ACTCTATTTCTTTTTTTAAGACTGATAGTAGTAGTTCTAGTGGTCAACTC
16948 ACT
1 ACT
16951 TTTTTCAAGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.44
Consensus pattern (50 bp):
ACTCTATTTCTTTTTTTAAGACTGATAGTAGTAGTTCTAGTGGTCAACTC
Left flanking sequence: Indices 16348 -- 16847
CATCAAGCTTTCGGGGGGCTCATTCAAGACTTACTCGAACTATTACTCAAAAGAAAATAAAAGCT
TTTGTTTCGGCTCATCGGGATAGAGATAGGAAAAAAAGGGATTTTCGCGGTTTGTGGATCAGTCG
AATAAATGCAGTAATTGGTGAGAATAAAAAAAATATATACTATAGTTATCATAATTTAATGTATA
ATCTGTACAAGAGGCAATTGCTTCTTAATCGTAAAATAGTTGCACAAATAGCTATATTAAAAGGA
GATTGTCTTTTTATGATTGCCAACGAGATCATACAAAACTCTACTACTTTCCCGGAGACTGAACT
CCGGGAAAGTAGTAGAGTTTTGTATGATAATAAAATCGAATTCATATCATAAAGTCATCAAAATA
ACATCAAAATAAAATGAACAACCCGAATTGGATTGTCGTAGTTTTCGAACAAAACATCAATCCAC
ATTTGATTTGAGTTTAGATTCAAATTTGAATTCAATTGAAGAGTA
Right flanking sequence: Indices 16951 -- 17450
TTTTTCAAGTTGTTTTTCATTATTAAGAAAAGGTAACGAAGATAAAATACGAGCTTGTTTTATAG
CAATCGTAATTAATCGTTGTTGTTTTAAGGTCAATCTATTCACGCGTCTAGATAATATTTTTCCT
TGTTCACTAATAAATCGACTAATTAAACTCATGTTTTTATAATCAATTCGATCCCCCGATTGGAT
CGGGGGCAAACGCCTACGAAAAGATCGCTTGGATTTAAGAAAGAGTCGCTTAGATTTATCCATGG
TTTGTTTATTTCTATCCCGAAAATCCTATTTCTTACAAAAAAAAAGATTTATTTTGTTTTATTTC
TATTTTTACTACCTACTACCTTTTATTTATTACTACCTTTTATTTATTTAATATGAAAAATAGGT
CATTTTTTTTTTTTCATGTTCCTTCCCTTTGTTTGGAAGGGTAACACAGAAGCGATCAATTTTAT
CTATTTCTTTATCTCTGCGTGAATCATATGTTTGCAACAACAGGG
Found at i:17194 original size:21 final size:20
Alignment explanation
Indices: 17165--17203 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
17155 ACGCCTACGA
*
17165 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTAGATTTAAG
17185 AAAGAGTCGCTTAGATTTA
1 AAAGA-TCGCTTAGATTTA
17204 TCCATGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTAGATTTAAG
Left flanking sequence: Indices 16665 -- 17164
ACTGAACTCCGGGAAAGTAGTAGAGTTTTGTATGATAATAAAATCGAATTCATATCATAAAGTCA
TCAAAATAACATCAAAATAAAATGAACAACCCGAATTGGATTGTCGTAGTTTTCGAACAAAACAT
CAATCCACATTTGATTTGAGTTTAGATTCAAATTTGAATTCAATTGAAGAGTAACTCTATTTCTT
TTTTTAAGACTGATAGTAGTAGTTCTAGTGGTCAACTCACTCTATTTCTTTTTTTAAGACTGATA
GTAGTAGTTCTAGTGGTCAACTCACTTTTTTCAAGTTGTTTTTCATTATTAAGAAAAGGTAACGA
AGATAAAATACGAGCTTGTTTTATAGCAATCGTAATTAATCGTTGTTGTTTTAAGGTCAATCTAT
TCACGCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTTTA
TAATCAATTCGATCCCCCGATTGGATCGGGGGCAAACGCCTACGA
Right flanking sequence: Indices 17204 -- 17703
TCCATGGTTTGTTTATTTCTATCCCGAAAATCCTATTTCTTACAAAAAAAAAGATTTATTTTGTT
TTATTTCTATTTTTACTACCTACTACCTTTTATTTATTACTACCTTTTATTTATTTAATATGAAA
AATAGGTCATTTTTTTTTTTTCATGTTCCTTCCCTTTGTTTGGAAGGGTAACACAGAAGCGATCA
ATTTTATCTATTTCTTTATCTCTGCGTGAATCATATGTTTGCAACAACAGGGACAGAATTTTCTC
AATTCCAATCGACTAGGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATACCAGTTGA
TTCCTTATTTTTATTAACACTATTTTGAGCACAATTGGTACATTCCAAAATAACCGTTACTCGGA
TATCTTTACCCTTGGCCATGAACCTCCTTTGGGTTTTTGATTCACTTAACTCTTCGATTTTGGGA
TTCGAAGAAGAAAAAGAAAGGAACGAAAAAAGTAGAAGTTGATAA
Found at i:17309 original size:17 final size:17
Alignment explanation
Indices: 17289--17323 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
17279 TTTTACTACC
17289 TACTACCTTTTATTTAT
1 TACTACCTTTTATTTAT
17306 TACTACCTTTTATTTAT
1 TACTACCTTTTATTTAT
17323 T
1 T
17324 TAATATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (17 bp):
TACTACCTTTTATTTAT
Left flanking sequence: Indices 16789 -- 17288
AAACATCAATCCACATTTGATTTGAGTTTAGATTCAAATTTGAATTCAATTGAAGAGTAACTCTA
TTTCTTTTTTTAAGACTGATAGTAGTAGTTCTAGTGGTCAACTCACTCTATTTCTTTTTTTAAGA
CTGATAGTAGTAGTTCTAGTGGTCAACTCACTTTTTTCAAGTTGTTTTTCATTATTAAGAAAAGG
TAACGAAGATAAAATACGAGCTTGTTTTATAGCAATCGTAATTAATCGTTGTTGTTTTAAGGTCA
ATCTATTCACGCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATG
TTTTTATAATCAATTCGATCCCCCGATTGGATCGGGGGCAAACGCCTACGAAAAGATCGCTTGGA
TTTAAGAAAGAGTCGCTTAGATTTATCCATGGTTTGTTTATTTCTATCCCGAAAATCCTATTTCT
TACAAAAAAAAAGATTTATTTTGTTTTATTTCTATTTTTACTACC
Right flanking sequence: Indices 17324 -- 17823
TAATATGAAAAATAGGTCATTTTTTTTTTTTCATGTTCCTTCCCTTTGTTTGGAAGGGTAACACA
GAAGCGATCAATTTTATCTATTTCTTTATCTCTGCGTGAATCATATGTTTGCAACAACAGGGACA
GAATTTTCTCAATTCCAATCGACTAGGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAA
TACCAGTTGATTCCTTATTTTTATTAACACTATTTTGAGCACAATTGGTACATTCCAAAATAACC
GTTACTCGGATATCTTTACCCTTGGCCATGAACCTCCTTTGGGTTTTTGATTCACTTAACTCTTC
GATTTTGGGATTCGAAGAAGAAAAAGAAAGGAACGAAAAAAGTAGAAGTTGATAATTCGAATCGC
AGTGCAATATTTAAGTTTTCGTTTAAGTATCTTGTATGATATTGTTGCCCCCGCCCTAGCTATTC
CATTTCAATTAATAATAGAGTGAGACCAGAATGGAAATGAATTAA
Found at i:39304 original size:15 final size:15
Alignment explanation
Indices: 39286--39336 Score: 84
Period size: 15 Copynumber: 3.3 Consensus size: 15
39276 CAATATTTAA
*
39286 AAATAGAATATATAG
1 AAATAGAATAGATAG
39301 AAATAGAATAGATAG
1 AAATAGAATAGATAG
39316 AAATAGAATAGATAG
1 AAATAGAATAGATAG
39331 ATAATA
1 A-AATA
39337 TCTATCTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.24
Consensus pattern (15 bp):
AAATAGAATAGATAG
Left flanking sequence: Indices 38786 -- 39285
GGCCCCTTTACCATTCTGTATAAATGGTTTATTCTATTTGTACAGATATGGTAAAGGGGCACATT
CTTTGTTTGTCCATTAGTTGTTAATTCTTCTCTTTATCGCGGGGTAGAGCAGTTTGGTAGCTCGC
AAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCCGTCTCCGCAACATTTTTGACAAAAAAAAA
AAACTGAGTTTCAAAATGAAAGTGGATAGTACCGGTACTATCCACTTTCAACTCTATAAAAAATT
TTATACTATTACTTATCTAAATACATAAAAGTAGGGGCGGATAGCGGGAATCGAACCCGCGTCTT
CTCCTTGGCAAAGAGAAATTTTTCCATTCGACTATATCCGCAATTTTTTATGGTACTCGATACGT
AATATATCGATTCGATTTATGCAGAGCTAGGTCCGAGACTCTGTTAGGGGTAATTCGAAATAAAG
TCGAAATCAAAAAAAAAAAAAATTGAATATTTTCACAATATTTAA
Right flanking sequence: Indices 39337 -- 39836
TCTATCTATTTTTCTATTCTATTCTAAATAGAATAATACTTTCTATTCATATTAATAATTCGTAT
TTCTCTTATTATATATTCTTCTATAAATAATAGAATATCTATTATTTATAGAAGAATATATATAG
AAAATTTATATATATACAATTTTTATATTATATTATTTATAGACTATTTAATGGAATATTTTCAA
ATTATTCTATTTTATTTTAATGTGCCTCACAATCCGAAAGAATTCGGGGGTCATTTCTATTTTCG
ATCTAGAACAAAAATAGCTTCAAGAGATGAGAGAATTAAGAATACCCACTAGAAAGACTAATCCA
ATCCATAATGATGTACCGGAAAATACAACATTTTTATTACTTGACCAACCATCAGGAGAAGCAAA
TACAAAAGGTACACTAATCAATAAAATGGATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGA
AAGCAATAGTCATGTTTCTAATCCTCCAATTTACCAACAAAAGAA
Found at i:39504 original size:16 final size:17
Alignment explanation
Indices: 39457--39498 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
39447 TTATAGAAGA
* **
39457 ATATATATAGAAAATTT
1 ATATATATACAATTTTT
39474 ATATATATACAATTTTT
1 ATATATATACAATTTTT
39491 ATAT-TATA
1 ATATATATA
39499 TTATTTATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
ATATATATACAATTTTT
Left flanking sequence: Indices 38957 -- 39456
CGCAACATTTTTGACAAAAAAAAAAAACTGAGTTTCAAAATGAAAGTGGATAGTACCGGTACTAT
CCACTTTCAACTCTATAAAAAATTTTATACTATTACTTATCTAAATACATAAAAGTAGGGGCGGA
TAGCGGGAATCGAACCCGCGTCTTCTCCTTGGCAAAGAGAAATTTTTCCATTCGACTATATCCGC
AATTTTTTATGGTACTCGATACGTAATATATCGATTCGATTTATGCAGAGCTAGGTCCGAGACTC
TGTTAGGGGTAATTCGAAATAAAGTCGAAATCAAAAAAAAAAAAAATTGAATATTTTCACAATAT
TTAAAAATAGAATATATAGAAATAGAATAGATAGAAATAGAATAGATAGATAATATCTATCTATT
TTTCTATTCTATTCTAAATAGAATAATACTTTCTATTCATATTAATAATTCGTATTTCTCTTATT
ATATATTCTTCTATAAATAATAGAATATCTATTATTTATAGAAGA
Right flanking sequence: Indices 39499 -- 39998
TTATTTATAGACTATTTAATGGAATATTTTCAAATTATTCTATTTTATTTTAATGTGCCTCACAA
TCCGAAAGAATTCGGGGGTCATTTCTATTTTCGATCTAGAACAAAAATAGCTTCAAGAGATGAGA
GAATTAAGAATACCCACTAGAAAGACTAATCCAATCCATAATGATGTACCGGAAAATACAACATT
TTTATTACTTGACCAACCATCAGGAGAAGCAAATACAAAAGGTACACTAATCAATAAAATGGATG
AAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAATAGTCATGTTTCTAATCCTCCAATTT
ACCAACAAAAGAACTATACCATTTGATCCCTTTTTTATTTTATCGACAAAAAATTTGTAATAAAA
AACGCATTATGGAGGGTTTTTTCATGAATCCATTGATTTTATATGACTTATTCCCACCCCACTCC
TTTATGAGGCATAGATCGAGGGTGGTCGTTTTTTTTTTTTTTACT
Found at i:43990 original size:14 final size:14
Alignment explanation
Indices: 43967--44003 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
43957 ATCTCATCTC
43967 TATC-GAATTTGAA
1 TATCAGAATTTGAA
43980 TATCAGAATTTTGAA
1 TATCAGAA-TTTGAA
43995 TATCAGAAT
1 TATCAGAAT
44004 AGTAGATAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.18
14 4 0.18
15 14 0.64
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (14 bp):
TATCAGAATTTGAA
Left flanking sequence: Indices 43467 -- 43966
ATTTTCCTTTCTTTCAGATTACTAAAAAAAAACTCCCAACAAGTATACTTTTTTTGCAGATCGGG
GTAAGAAATAGACTTCCAATATTTTTTTTTATCTATCTGTCAGATTATTGAATATTGGATTGAAT
TTATTTAAGAATAAGAGACTGTAAGTGAAAAAGTCTCTTTCTCGTATCCATTAATTGCCCGAAAA
TATCGTATGCATCGATATGAAAAGAAGATATTTGATATGATACGCGAAGCCATGATTTGGTTGGT
GGATCTTTTTTTCTTGTGTTCGGAAATAAACGATATTAAAAATAAAAATGACTTGTATGTTGGAA
CTTGGAATAAGTCCCTCTGCTTGGAGCAGGGGAATAGCAATTTATTCCTATAGAACCTCTAGGAA
CAAGACAAGACGATTTAATCAGAAATATCGACAGATTGTTACGGAGTCAAAACCAAAGAAGTATT
AAAAACAAAATACAAAAAAAAGATCTACTGTTTGAATCTCATCTC
Right flanking sequence: Indices 44004 -- 44503
AGTAGATAGAGTTATGATTCAATGGCTTAGGTCCACTTACTTTTTTTATAATCTTTTCAATTTTT
TTTTTATTGGAATAATCGAAAAAAAAAATTGAAATATTTGGCAATTAAAGGACATTATTCATTAT
AAAAATTAATAATATAATAATAAAAACGTTCCACTTTCTAACTATAATTACTTTACTCTATTCAA
ACTCATTAGAATGATAACGCTAACTTATTAGAATTCGAATTCATAATTCCATTTGCATGCAAATG
AGATTCTACGATTCCTGATTTTTTTTATTACAAATATCAACCTCTATTCTTCCTTCAAATATGAA
TACTACTGCTGGAGTTTTATCAAAAAAAGTAAAAAGCCCCTTATCGGATTTGAACCGATGACTTA
CGCCTTACCATGGCGTTACTCTACCGCTGAGTTAAAAGGGCCTTGTTTGATTCAATTCCTGTCCT
GTGAATAAGGAACTAGACAATATGAGTCTAGTACATATATTTGTT
Found at i:43994 original size:15 final size:15
Alignment explanation
Indices: 43974--44003 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
43964 CTCTATCGAA
43974 TTTGAATATCAGAAT
1 TTTGAATATCAGAAT
43989 TTTGAATATCAGAAT
1 TTTGAATATCAGAAT
44004 AGTAGATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
TTTGAATATCAGAAT
Left flanking sequence: Indices 43474 -- 43973
TTTCTTTCAGATTACTAAAAAAAAACTCCCAACAAGTATACTTTTTTTGCAGATCGGGGTAAGAA
ATAGACTTCCAATATTTTTTTTTATCTATCTGTCAGATTATTGAATATTGGATTGAATTTATTTA
AGAATAAGAGACTGTAAGTGAAAAAGTCTCTTTCTCGTATCCATTAATTGCCCGAAAATATCGTA
TGCATCGATATGAAAAGAAGATATTTGATATGATACGCGAAGCCATGATTTGGTTGGTGGATCTT
TTTTTCTTGTGTTCGGAAATAAACGATATTAAAAATAAAAATGACTTGTATGTTGGAACTTGGAA
TAAGTCCCTCTGCTTGGAGCAGGGGAATAGCAATTTATTCCTATAGAACCTCTAGGAACAAGACA
AGACGATTTAATCAGAAATATCGACAGATTGTTACGGAGTCAAAACCAAAGAAGTATTAAAAACA
AAATACAAAAAAAAGATCTACTGTTTGAATCTCATCTCTATCGAA
Right flanking sequence: Indices 44004 -- 44503
AGTAGATAGAGTTATGATTCAATGGCTTAGGTCCACTTACTTTTTTTATAATCTTTTCAATTTTT
TTTTTATTGGAATAATCGAAAAAAAAAATTGAAATATTTGGCAATTAAAGGACATTATTCATTAT
AAAAATTAATAATATAATAATAAAAACGTTCCACTTTCTAACTATAATTACTTTACTCTATTCAA
ACTCATTAGAATGATAACGCTAACTTATTAGAATTCGAATTCATAATTCCATTTGCATGCAAATG
AGATTCTACGATTCCTGATTTTTTTTATTACAAATATCAACCTCTATTCTTCCTTCAAATATGAA
TACTACTGCTGGAGTTTTATCAAAAAAAGTAAAAAGCCCCTTATCGGATTTGAACCGATGACTTA
CGCCTTACCATGGCGTTACTCTACCGCTGAGTTAAAAGGGCCTTGTTTGATTCAATTCCTGTCCT
GTGAATAAGGAACTAGACAATATGAGTCTAGTACATATATTTGTT
Found at i:44676 original size:9 final size:9
Alignment explanation
Indices: 44662--44697 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
44652 GATAAATATC
44662 AATGTAATG
1 AATGTAATG
44671 AATGTAATG
1 AATGTAATG
44680 ---GTAATG
1 AATGTAATG
44686 AATGTAATG
1 AATGTAATG
44695 AAT
1 AAT
44698 TGAATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
6 6 0.25
9 18 0.75
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (9 bp):
AATGTAATG
Left flanking sequence: Indices 44162 -- 44661
TTCCACTTTCTAACTATAATTACTTTACTCTATTCAAACTCATTAGAATGATAACGCTAACTTAT
TAGAATTCGAATTCATAATTCCATTTGCATGCAAATGAGATTCTACGATTCCTGATTTTTTTTAT
TACAAATATCAACCTCTATTCTTCCTTCAAATATGAATACTACTGCTGGAGTTTTATCAAAAAAA
GTAAAAAGCCCCTTATCGGATTTGAACCGATGACTTACGCCTTACCATGGCGTTACTCTACCGCT
GAGTTAAAAGGGCCTTGTTTGATTCAATTCCTGTCCTGTGAATAAGGAACTAGACAATATGAGTC
TAGTACATATATTTGTTACTGCATATACTTCTTATATAGATAAGATTAGAATATATGTACATAGA
TTTATCCGCATAGCGACTCATTAAGGAACAATAAATTGGATTTACCTAGTAAATAGAGTATAGTT
AATAAAATGGTTTAGTGTGATATTGGATTGGATTGGATAAATATC
Right flanking sequence: Indices 44698 -- 45197
TGAATTATTTCAAAACCGATTCGAATTGAAGTCCTCATCATAACGAAATTCATTTCATTAATACA
TATACCCACCACCAATAAAATAAAAATATTTCATCGAATCATTGATAAATGGATTCAATTTGTCC
TGTCCCTCAACCAAATTCTTATTGAAAAAAAAACAATTAATTTTCAATAACTTGTTGATCTCTAT
CCTTCTTACCCGATTTCCAGATTGATTATCGTTTTTTATTTCCCGCCTTAGTGTGTGAATTAGTG
TGAAATGGAAATATACCTACCGAATCTTAACAATGAATCAAAAAATTCTATGGAATTTTGAAAAA
TGGAAGATGGAAAGATCCTTCTGATCGAATCATATCATTCCATTATATTGACAATTTCAAAAAAC
TGTTCATACTATCAATATAGCCGAATGGCGGTCGGGCAAGTATGCCCCCATCGTCTAGTGGTTCA
GGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACTTCCCCTG
Found at i:44685 original size:15 final size:15
Alignment explanation
Indices: 44665--44694 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
44655 AAATATCAAT
44665 GTAATGAATGTAATG
1 GTAATGAATGTAATG
44680 GTAATGAATGTAATG
1 GTAATGAATGTAATG
44695 AATTGAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.27, T:0.33
Consensus pattern (15 bp):
GTAATGAATGTAATG
Left flanking sequence: Indices 44165 -- 44664
CACTTTCTAACTATAATTACTTTACTCTATTCAAACTCATTAGAATGATAACGCTAACTTATTAG
AATTCGAATTCATAATTCCATTTGCATGCAAATGAGATTCTACGATTCCTGATTTTTTTTATTAC
AAATATCAACCTCTATTCTTCCTTCAAATATGAATACTACTGCTGGAGTTTTATCAAAAAAAGTA
AAAAGCCCCTTATCGGATTTGAACCGATGACTTACGCCTTACCATGGCGTTACTCTACCGCTGAG
TTAAAAGGGCCTTGTTTGATTCAATTCCTGTCCTGTGAATAAGGAACTAGACAATATGAGTCTAG
TACATATATTTGTTACTGCATATACTTCTTATATAGATAAGATTAGAATATATGTACATAGATTT
ATCCGCATAGCGACTCATTAAGGAACAATAAATTGGATTTACCTAGTAAATAGAGTATAGTTAAT
AAAATGGTTTAGTGTGATATTGGATTGGATTGGATAAATATCAAT
Right flanking sequence: Indices 44695 -- 45194
AATTGAATTATTTCAAAACCGATTCGAATTGAAGTCCTCATCATAACGAAATTCATTTCATTAAT
ACATATACCCACCACCAATAAAATAAAAATATTTCATCGAATCATTGATAAATGGATTCAATTTG
TCCTGTCCCTCAACCAAATTCTTATTGAAAAAAAAACAATTAATTTTCAATAACTTGTTGATCTC
TATCCTTCTTACCCGATTTCCAGATTGATTATCGTTTTTTATTTCCCGCCTTAGTGTGTGAATTA
GTGTGAAATGGAAATATACCTACCGAATCTTAACAATGAATCAAAAAATTCTATGGAATTTTGAA
AAATGGAAGATGGAAAGATCCTTCTGATCGAATCATATCATTCCATTATATTGACAATTTCAAAA
AACTGTTCATACTATCAATATAGCCGAATGGCGGTCGGGCAAGTATGCCCCCATCGTCTAGTGGT
TCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACTTCCC
Found at i:49742 original size:18 final size:18
Alignment explanation
Indices: 49715--49778 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 18
49705 TTATAATATA
49715 AATATA-AAATATTCTAT
1 AATATAGAAATATTCTAT
*
49732 AATATAGAAATTTTC-AT
1 AATATAGAAATATTCTAT
* * *
49749 AATATCGAAATATTATAG
1 AATATAGAAATATTCTAT
*
49767 AATATATAAATA
1 AATATAGAAATA
49779 ATATAAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
17 20 0.53
18 18 0.47
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (18 bp):
AATATAGAAATATTCTAT
Left flanking sequence: Indices 49215 -- 49714
ATTCACAATTCAATATACATAGATATATACCGAATATCTATCTATTTTATATGCCCCCTATCATT
TTTTCATGCAATTTAGAATACTCGAATGGTCGATTCTTTTTTTTTTTTTAATATAAAATCCACTT
ATTAATTTATTAATTTAGAATAGCCAATAGCTATAACTAATCTATAATGGTTATAAAAAACCATT
AGATTAAATTCTAATTATACATTCATTCATTTAGTAATTTGAATATTTTTTGATTCTATCTAATG
AAATAGTAATTCGATATTTTTATCAAATTACTAATTACTTAAAAAATTTACTTTGAAAATCCAAT
TTTTTAGAATTCTAATGGATAAATCTATGCATTATACATATTTAATCTTAATGTATAAGAATATT
GTAATAGAAATTACTGTTTATTGTAATCTAATTCTTCATTATTTTATTATAAATTCTAATACTAT
ACTATTCTATTATATAAATAGAAGATACTTTAACTTTATAATATA
Right flanking sequence: Indices 49779 -- 50278
ATATAAAATATATCTATATAGATAGACTATGTCTATATATTATAAATTAACAATATATATGTATA
CACAAAAATAGATTAATTATTATATTATTCCTTTTTGTTTTAATAAAAAAACAAAGTAAATGATA
TTTTATTTGAATTATGAAAACTGAAAAAGGAAAATCTTACTATACACTATACTAAACTAATTAAA
CTAATTAAGATGAAGATATTGTTTTATTGATAAACATATATTTGATAAATTATTTGAGAAATAGA
TAGATCGAAATCTTTTCTATGAACTATTAATCGTTATCTTCAAATTGTTATGTTCTTTTTTATGT
TATGTCCTAGAATATCAAAGATATATTAAATATTGAATATTCTATATCTTTTTATATGTTCGTAA
TAATTAATTATGTTAGGAATAGCTTATAATAAACAGTAAATAAATAAGATCCCAGTAGCTTAGCT
TATTATAAATTCCTATGCACGCGCAATTTCTGTGTTATGTGAGCC
Found at i:49783 original size:18 final size:18
Alignment explanation
Indices: 49756--49791 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
49746 CATAATATCG
* *
49756 AAATATTATAGAATATAT
1 AAATAATATAAAATATAT
49774 AAATAATATAAAATATAT
1 AAATAATATAAAATATAT
49792 CTATATAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
AAATAATATAAAATATAT
Left flanking sequence: Indices 49256 -- 49755
CTATTTTATATGCCCCCTATCATTTTTTCATGCAATTTAGAATACTCGAATGGTCGATTCTTTTT
TTTTTTTTAATATAAAATCCACTTATTAATTTATTAATTTAGAATAGCCAATAGCTATAACTAAT
CTATAATGGTTATAAAAAACCATTAGATTAAATTCTAATTATACATTCATTCATTTAGTAATTTG
AATATTTTTTGATTCTATCTAATGAAATAGTAATTCGATATTTTTATCAAATTACTAATTACTTA
AAAAATTTACTTTGAAAATCCAATTTTTTAGAATTCTAATGGATAAATCTATGCATTATACATAT
TTAATCTTAATGTATAAGAATATTGTAATAGAAATTACTGTTTATTGTAATCTAATTCTTCATTA
TTTTATTATAAATTCTAATACTATACTATTCTATTATATAAATAGAAGATACTTTAACTTTATAA
TATAAATATAAAATATTCTATAATATAGAAATTTTCATAATATCG
Right flanking sequence: Indices 49792 -- 50291
CTATATAGATAGACTATGTCTATATATTATAAATTAACAATATATATGTATACACAAAAATAGAT
TAATTATTATATTATTCCTTTTTGTTTTAATAAAAAAACAAAGTAAATGATATTTTATTTGAATT
ATGAAAACTGAAAAAGGAAAATCTTACTATACACTATACTAAACTAATTAAACTAATTAAGATGA
AGATATTGTTTTATTGATAAACATATATTTGATAAATTATTTGAGAAATAGATAGATCGAAATCT
TTTCTATGAACTATTAATCGTTATCTTCAAATTGTTATGTTCTTTTTTATGTTATGTCCTAGAAT
ATCAAAGATATATTAAATATTGAATATTCTATATCTTTTTATATGTTCGTAATAATTAATTATGT
TAGGAATAGCTTATAATAAACAGTAAATAAATAAGATCCCAGTAGCTTAGCTTATTATAAATTCC
TATGCACGCGCAATTTCTGTGTTATGTGAGCCCGCTTAGCTCAGA
Found at i:56603 original size:18 final size:15
Alignment explanation
Indices: 56564--56596 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
56554 AATTATGAAT
56564 TAATTATTCAACTAC
1 TAATTATTCAACTAC
56579 TAATTATTCAACTAC
1 TAATTATTCAACTAC
56594 TAA
1 TAA
56597 GATTTATCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATTATTCAACTAC
Left flanking sequence: Indices 56064 -- 56563
TTAGATTTATTGGATTTGTTGCTAAAATATCGGTATTTAACCCGAAACTTCCGGCGGATGGCCAG
TAACCCAAGCAAAGGAAAGAATCGGTTATATTTTTCATATGATCTCATCTCCTCTTATGGATAGA
CTAATTATCTTTCTACGATTCCTATTTTTATTTTTATATTTTTTTTTTTTAGGATTAAACAAAAG
GATTCGCAAATAAAAGCGCTAATGCTACAACCAGCCCATAAATTGTTAAAGCTTCCATAAAAGCC
AGACTAAGCAATAAAGTACCCCGTATTTTTCCCTCTGCCTCAGGTTGTCGCGCAATCCCTTCTAC
AGCTTGCCCTGCGGCAGTGCCTTGACCAACCCCCGGTCCAATAGAAGCAAGCCCAACGGCCAACC
CAGCAGCAATAACGGAAGCGGCAGAAATCAGTGGATTCATGATAAGTTCCTCGCACCCCAAATAA
AATAAAGAAAGAAATAGTTAATGATACAACCAACAAATTATGAAT
Right flanking sequence: Indices 56597 -- 57096
GATTTATCCAGTCAAAAAGTAATTAAGAATTCCGAATTGAGATAATAATATTTATTGAACTATCC
AAACTACTTCGATATTGATTTTTTGTTTCTATCCACGTAGTTTTTGTGAATCCATACAACTTTTT
TTCTTATCTTAAATCATTCTTTTAATTCTTCGTTCTTTTTCTTGATTTCATTTCTTTAGTCATTC
AATTCACAATTACAAATGAAACGGAAGGGCTTCGTTTTTTGAATCCCGAGCTAAATTTACAGTAG
CAGGGCAAATTTAGATATAACTAGTTAATATCTAATATCACATATACACGTGTTTCTTCCATACC
GTAAACCAATTATTCGTATCTTGGGTTCAATATCGGATTCGAGAATCATCCTTGGCTTTGAAACC
TCCAAAAACGAAAGAGTTGTCTTTTAGCGATTAGATTATATACACCTAGTTCGACACCCTTCACT
CCTACTCTATTTTTTTATCTCGCTTTTTTTTTTATGAAAATTCTC
Found at i:57261 original size:20 final size:19
Alignment explanation
Indices: 57224--57267 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
57214 GATAGCTCCT
*
57224 AATATCTAATATACTAAAA
1 AATATCTAATATAATAAAA
* *
57243 TATATCCTAATCTAATAAAA
1 AATAT-CTAATATAATAAAA
57263 AATAT
1 AATAT
57268 TTAACATGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (19 bp):
AATATCTAATATAATAAAA
Left flanking sequence: Indices 56724 -- 57223
TTTTTCTTATCTTAAATCATTCTTTTAATTCTTCGTTCTTTTTCTTGATTTCATTTCTTTAGTCA
TTCAATTCACAATTACAAATGAAACGGAAGGGCTTCGTTTTTTGAATCCCGAGCTAAATTTACAG
TAGCAGGGCAAATTTAGATATAACTAGTTAATATCTAATATCACATATACACGTGTTTCTTCCAT
ACCGTAAACCAATTATTCGTATCTTGGGTTCAATATCGGATTCGAGAATCATCCTTGGCTTTGAA
ACCTCCAAAAACGAAAGAGTTGTCTTTTAGCGATTAGATTATATACACCTAGTTCGACACCCTTC
ACTCCTACTCTATTTTTTTATCTCGCTTTTTTTTTTATGAAAATTCTCTTTTGGTTAATCGTTGA
TTTGAATGTGAATGAATGAAACGGGAATCTGTTTTAGTTCCATAAAAAAAAACATCTTTTTTTTA
ATCACACGTCGTAAACCGTAGATATCATACCAAATGATAGCTCCT
Right flanking sequence: Indices 57268 -- 57767
TTAACATGTTATAGTTATAATTGAATGAACAAAAAAAAAATATTCATTGGAGGGAAATTGAAATT
GGTCAAACAAAGAGTATTTTTTTTTTAGAATTTTCCGGTAATCTTTTATATTTTACTATTACACT
GAATCGTAAAAGGGGATTATTTGGAAAACTAGTCAATGATGGCCTTCCATGGATTCACCTATATA
AGCTGCAGCTAAAGTAGCAAAAATAAGAGCTTGAATACCGCTTGTAAATAATCCAAGGAACATGA
CAGGTATAGGAACTACTAAAGGGACTAAAGAAACAAGAACAACAACTACTAATTCATCAGCTAAT
ATATTTCCGAAAAGTCGAAAACTAAGCGATAAGGGTTTTGTGAAATCTTCTAAGATGTTAATCGG
TAAAAGGATTGGAGTTGGTTGGATGTATTTACCAAAATAAGCTAATCCTTTTTTTGAAATCCCCG
CATAGAAATATGCTACTGACGTAAGTAAAGCTAATGCAACGGTCG
Found at i:58414 original size:13 final size:13
Alignment explanation
Indices: 58396--58422 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58386 CAATATTTTA
58396 TTTATCTTATTAT
1 TTTATCTTATTAT
58409 TTTATCTTATTAT
1 TTTATCTTATTAT
58422 T
1 T
58423 AATCAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTATCTTATTAT
Left flanking sequence: Indices 57896 -- 58395
GGACTATATTCTTCTCCAATCTGAGTTTTGCTCACGTCTCGAATGAATTCAAGGACATATTCAAA
GAAATTCTGACCGAAAGTGGGAATGGTTTGCGGATTTCGAACAACTAGAATGGCTGAAACTAATA
AGATAGCAATTACAACCCAAGAAGTAATAAGTACTTGGGCATGCACTTGGAAACCTCCTATTTGC
CAATAGAAATGTTGACCTACTTCCACAGCAGATATATCGTATAATCTTTTTAATGTGTTGATGGA
ACATAATAGAACATTCATATTGCCCTTACCCCTAAAAGGAAAACTTGAAAAGGAATTATTTTGAT
TCAACTATCTCCTTTTTTTTGACTTGTCTACTTAAATTTTCTTTTTTGAATACCAACTAATCACA
TAATATTTCCGGTTATTTTTATCTTTTTATTTTTTGCACGCTTTAGTAATACTATAGTAACCGAT
TCCAAAAATCTTATGAATTCTGAATTACCCCAACCCAATATTTTA
Right flanking sequence: Indices 58423 -- 58922
AATCAATAATTTCGGATATAGCTAGATTCGTATTATATAGCTAGAACGACCCTCACAAATTGCAA
ATACTAATTTGTTAAGAATTAATCGGATTGAAGCTATAGCATCATCATTAGCTGGAATCGAAATA
TCTGCGAGATCCGGGTCACAATTTGTATCGATTAAGCAAATCGTTGGAATTCCCAAAGTGATACA
TTCTTGAAGAGCCGTATATTCTTTTTGCTGATCAACGATTATTACAATATCGGGTAACCCTGTCA
TATATTTAATACCGCCCAGATATGTTTCCAAATGAGATAATTGTCTCTTCAACATAGCGGCATCT
CTTTTTGGAAGACAGTTGAGTCTCCCCGTTTTTTGTTCCGTTCTCAAGTCTCTTAACTTGTGAAG
TCTCGTTTCTGTAGTATACCAATTTGTTAACATACCGCCAAGCCATTTTTTACTAACATAATGAC
ACCGAGCTCTTATTGCAGCCCGCGCTACTGAATCAGCTGCTTTAT
Found at i:71533 original size:16 final size:16
Alignment explanation
Indices: 71512--71543 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
71502 GGCTCATCCG
71512 AAAGAAGTATAATTAA
1 AAAGAAGTATAATTAA
*
71528 AAAGAAGTATCATTAA
1 AAAGAAGTATAATTAA
71544 GAAGTATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.03, G:0.12, T:0.25
Consensus pattern (16 bp):
AAAGAAGTATAATTAA
Left flanking sequence: Indices 71012 -- 71511
CAAAGAATTTACTAGGCTGTCTTGCGATTGTTTTAGAGAACGAATCGGGAGGCGGTAAGGATTAG
ATCAAATGGAAATAAGAGTATGAGTATGCAAAAAGAATCTGTCTTGATTCTATATTTTCATTTTT
ACTTAATGAAATGATGAAATGGGGGGTGGAAACAAAATCGAATAATTCTTTTTTATTTTGTTTCC
TTTTTTATATTTCCCCCCCCCCCAAAAAAAAAAACAAAGAATGTTAATACTTCAATAATATTCGA
ATGGTTAATTTAGTTGATTGAAAGACCAAAAAGTCTAGTCTATCTAGGGAAGTTTAGGGGTGGGA
ACAGTCAAAATGCATCTCAAATACATTACAAATAGAATCCGACCCTTTTCTTTGTATTTTTTCTT
TAATATGTTACTTTTTATTTTTAGCGGCCATATAATTGATGTTGATGTACACGTTACATAGTTCA
TGATGCAGAACTTTTTCAGTTCAGCCTATTGGCTCGGCTCATCCG
Right flanking sequence: Indices 71544 -- 72043
GAAGTATCATTCAAATTTGAGAATCTTAATGAATCCCTATCCTAATTTGTTTATTTATCCCATCC
ATAATAATATATGAATGAGACCTCAATTATTTTCTTTGATTTTACTTCAATTACTTTGTCTGATC
TATAAGACAATGTACAGATATTCCTTAAATATCTGGGGTTACAGAAATGCGGATTAGTTTCTTCT
TTTTATCTTTTAGTGAGCATCTTGTATTTCATAAAATTGGGGAGCGATATAATCTTTACGCAAAG
GCCATCCTATCCAACTTTCAGGCATTAAAATACGTTTCAGACGTGGATGATTATCATAAGAGATT
CCCAACATATCATAAGATTCTCTTTCTTGAAAATCTGCACTTTTCCAAACCCAGAAAATAGAAGG
AATTCCGGGATTTTTCCTTGAGACAAATACTTTTATGCATACCTCTTCTGGTTGATCTAGACCAT
ACTCTATTCTCGTAAGATGATACACACTAGCTAACATTCCTCCTG
Found at i:71547 original size:13 final size:13
Alignment explanation
Indices: 71529--71554 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71519 TATAATTAAA
71529 AAGAAGTATCATT
1 AAGAAGTATCATT
71542 AAGAAGTATCATT
1 AAGAAGTATCATT
71555 CAAATTTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
AAGAAGTATCATT
Left flanking sequence: Indices 71029 -- 71528
TGTCTTGCGATTGTTTTAGAGAACGAATCGGGAGGCGGTAAGGATTAGATCAAATGGAAATAAGA
GTATGAGTATGCAAAAAGAATCTGTCTTGATTCTATATTTTCATTTTTACTTAATGAAATGATGA
AATGGGGGGTGGAAACAAAATCGAATAATTCTTTTTTATTTTGTTTCCTTTTTTATATTTCCCCC
CCCCCCAAAAAAAAAAACAAAGAATGTTAATACTTCAATAATATTCGAATGGTTAATTTAGTTGA
TTGAAAGACCAAAAAGTCTAGTCTATCTAGGGAAGTTTAGGGGTGGGAACAGTCAAAATGCATCT
CAAATACATTACAAATAGAATCCGACCCTTTTCTTTGTATTTTTTCTTTAATATGTTACTTTTTA
TTTTTAGCGGCCATATAATTGATGTTGATGTACACGTTACATAGTTCATGATGCAGAACTTTTTC
AGTTCAGCCTATTGGCTCGGCTCATCCGAAAGAAGTATAATTAAA
Right flanking sequence: Indices 71555 -- 72054
CAAATTTGAGAATCTTAATGAATCCCTATCCTAATTTGTTTATTTATCCCATCCATAATAATATA
TGAATGAGACCTCAATTATTTTCTTTGATTTTACTTCAATTACTTTGTCTGATCTATAAGACAAT
GTACAGATATTCCTTAAATATCTGGGGTTACAGAAATGCGGATTAGTTTCTTCTTTTTATCTTTT
AGTGAGCATCTTGTATTTCATAAAATTGGGGAGCGATATAATCTTTACGCAAAGGCCATCCTATC
CAACTTTCAGGCATTAAAATACGTTTCAGACGTGGATGATTATCATAAGAGATTCCCAACATATC
ATAAGATTCTCTTTCTTGAAAATCTGCACTTTTCCAAACCCAGAAAATAGAAGGAATTCCGGGAT
TTTTCCTTGAGACAAATACTTTTATGCATACCTCTTCTGGTTGATCTAGACCATACTCTATTCTC
GTAAGATGATACACACTAGCTAACATTCCTCCTGGTGCTACATCA
Found at i:73704 original size:14 final size:15
Alignment explanation
Indices: 73685--73723 Score: 62
Period size: 14 Copynumber: 2.6 Consensus size: 15
73675 AGTATTCTTC
73685 TATCTAATATT-AAA
1 TATCTAATATTAAAA
73699 TATCTAATATTAAAA
1 TATCTAATATTAAAA
73714 TATTCTAATA
1 TA-TCTAATA
73724 GAAATTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 11 0.48
15 5 0.22
16 7 0.30
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (15 bp):
TATCTAATATTAAAA
Left flanking sequence: Indices 73185 -- 73684
ACTCATTGCCCATGGATAAAGAAAAACCGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACA
TATAATAACGGATTCGAAATTGTAACCAAGCATCGCCCATTGGTTCTATTCCCGATTCATAACTA
GAAAGTTTCTCTGGCCCCTTGCTAATCGGGGCTAAAATTCCAGAAATTAGAAATGCCAAAATAGG
AATAAGGCTCGATATTATTAGAAATGACCAAAAAATATCATATTCGTAAAGCAAAAACATAAACG
TACTCCTATGAATGTGGAAAATATAGAAAATATACTAGATTAGGCATTAGTATTAGTTATTAGTC
GATTCTATATTAATCTATATTTAATTTCAAAATTCTTATAAAAATTATTATTTCTAAAAAATAAT
TTTTATATTCATATTTATATTATATAACTGCTATTAAATTAAATCATTTTTAGCACATTTTTATA
AATGATTTAGACGAGTATACTAGAATACTAATATTAGTATTCTTC
Right flanking sequence: Indices 73724 -- 74223
GAAATTTAGAAATTCTTTCTACTACTAATTAATAGAATTTATATTATTTCTAATACTAGTATAGA
GTATTTAGTAATGAGAGATATTAGATAATAAATATTATTAGTATCTGTAGGAATATTAGGGCTAT
ACGGACTCGAACCGTAGACCTTCTCGGTAAAACAAATCAAACTGATTATTATCAAAAAGATTTTA
ATTATTTTAAAGACCCAACATGCATTTTTTTGCATTGGGCTTTTTTCATTAACTGATACAAATAT
CAGTTAGTCTACCATCTTTTTTACCATCTTTTTCTTGACAAAAAGAATAAGGAGATGACTCCCTG
TGCTCTGATTTTTTATTTGGATTACAATCTGAGAGCACTACCAAAGTGTTTCAAAGAAGGGTTAT
CATCCTGACGTAGGTCTGCTTCTGGCCTAGATCAACTTAAGTTAAATGGATTCTCTATCGACTTA
CTTAACTTAAATTAAAGTATCAAATAGGAAATGAAACTTCATACA
Found at i:88151 original size:27 final size:27
Alignment explanation
Indices: 88121--88219 Score: 198
Period size: 27 Copynumber: 3.7 Consensus size: 27
88111 AAACGGAACG
88121 AACAGAGATCGAATCAGAACGAACAGA
1 AACAGAGATCGAATCAGAACGAACAGA
88148 AACAGAGATCGAATCAGAACGAACAGA
1 AACAGAGATCGAATCAGAACGAACAGA
88175 AACAGAGATCGAATCAGAACGAACAGA
1 AACAGAGATCGAATCAGAACGAACAGA
88202 AACAGAGATCGAATCAGA
1 AACAGAGATCGAATCAGA
88220 GCGATTCCCT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.52, C:0.18, G:0.22, T:0.08
Consensus pattern (27 bp):
AACAGAGATCGAATCAGAACGAACAGA
Left flanking sequence: Indices 87621 -- 88120
GAAGTGGAGGTTTTTTTCTTCAAACAACAAGGGGCTGGGTCAACTATTCAATCAAATGATATTGA
GCATGTTTCCCATCTCTTCTTGAGAAACAAGCGGGCTATTTCTTTGCAAAATTGTGCTCAATTTC
ATATGTGGCAATTCCGCCAAGATCTCTTCGTTAGTTGGGGGAAGAATCCGCACGAATCGGATTTT
TTGAGGAACATATCGAGAGAGAATTGGATTTGGTTAGACAATGTGTGGTTGGTAAACAAGGATCG
GTTTTTTAGCAAGGTACGGAATGTATCATCAAATATTCAATATGACTCCACGAGATCTAGTTTCA
TTCAAGTAACGGATTCTAGCCAATTGAAAGGATCTTCTGATCAATCCAGGGATCATTTCGATTCC
ATTAGGAATGAGGATTCGGAATATCACACATTGATCAATCAAAGAGAGATTCAACAACTAAAAGA
AAGATCGATTCTTTGTTGGGATCCTTCCTTTCTTCAAACGGAACG
Right flanking sequence: Indices 88220 -- 88719
GCGATTCCCTAAATGCCTTTCTGGATATTCCTCAATGTGCCGACTATTCATGGAACGTGAGAAGC
AGATGATTATTCATCTGCTTCCGGAAGAAATCGAAGAATTTCTTGGGAATCCTACAAGAGCCAAT
CGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCTGGGTTCGAATCCTACTGAGAGGTCCAC
TAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTTCTTTCCAGGCGATCGGAAA
ATAAAGAAATAGTTAATATATTCAAGATAATTATGTATTTACAAAATACCGTCTCAATTCATCCT
ATTTCATCAGATCCGGGATGTGATATGGTTCCGAAGGATGAACTGGACAGTTCCAATAAGATTTC
ATTCTTGAACAAAAATCCATTTTTTGGTTTATTTCATCTATTCCATGACCGGAACATGGGGGGAT
ACACGTTACACCACTATTTTGAATCAGAAGAGAGATTTCAAGAAA
Found at i:89510 original size:21 final size:21
Alignment explanation
Indices: 89484--89551 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
89474 ACTTTGTTTC
89484 TTTTTGTCCAAGTTACTTCTT
1 TTTTTGTCCAAGTTACTTCTT
* *
89505 TTTTTGTCCAAGTTTCTTCTC
1 TTTTTGTCCAAGTTACTTCTT
* * * *
89526 TTTTTGTCTAACTCACTTCCT
1 TTTTTGTCCAAGTTACTTCTT
89547 TTTTT
1 TTTTT
89552 CTTTGTGAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.12, C:0.22, G:0.07, T:0.59
Consensus pattern (21 bp):
TTTTTGTCCAAGTTACTTCTT
Left flanking sequence: Indices 88984 -- 89483
TGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCCGAAATCTGATT
CAAATCCAATATAGCACCTATGGCTATGGGTACATAAGAAATGTATTGAATCGATTCTTTTTAAT
GAATCGATTCGATCGCAACTTCAAATATGGAATTCAAAGGTATCAAATAGGAAATGATACTCTGA
ATCATAGAACTATAATGAAATACACGATCAACCAACATTTATCAAATTTGAAAAAGAGTCAGAAG
AAATGGTTCGATCCTCTTATTTTGATTTCTCGAACTGAGAGATCCATGAATCGGGATCCTAATGC
ATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAACATTTGGAACATTTCATTTCTG
AGCAGAATAGCCGTTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATTGG
TCTGAGGTTATCGACAAAAAAGATTTGTCTAAGTCACTTTGTTTC
Right flanking sequence: Indices 89552 -- 90051
CTTTGTGAGTTTCGGGAGTATCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTC
CGAATGATCCACTCTGTAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAA
TGGAAACCCTTCTTATTGGATGACCATGATATTTCCCAAAAATCGAAATTCTTGATCAATGGAGG
AACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAA
AGAATCGCAGGAAATCTTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGAC
AATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCCTCTTTTTATAAAGCAAA
TCGACTTAGATTCTTGAATAATCGATATCACTTCTGCTTCTATTGTAACAAAAGATTCCCTTTTT
ATGTGGAAAAGGACTGTATCAATAATTATGATTTTACGTATGGAC
Found at i:90183 original size:15 final size:15
Alignment explanation
Indices: 90163--90197 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
90153 TCACAGGTAT
90163 CTAACATATTGATAC
1 CTAACATATTGATAC
90178 CTAACATATTGATAC
1 CTAACATATTGATAC
90193 CTAAC
1 CTAAC
90198 GATTTTCCGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (15 bp):
CTAACATATTGATAC
Left flanking sequence: Indices 89663 -- 90162
AATCGTTCATTTGAAAAAATGGAAACCCTTCTTATTGGATGACCATGATATTTCCCAAAAATCGA
AATTCTTGATCAATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATT
GACTCATTCCATACTAGAAAGAATCGCAGGAAATCTTTTGATAACACGGATTCCTATTTCTCAAT
GATATCCCACGATCAAGACAATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATAT
CCTCTTTTTATAAAGCAAATCGACTTAGATTCTTGAATAATCGATATCACTTCTGCTTCTATTGT
AACAAAAGATTCCCTTTTTATGTGGAAAAGGACTGTATCAATAATTATGATTTTACGTATGGACA
ATTCCTCAATATCTTGTTCATTCGCAACAAAATATTTTCTTTGTGTGGCGGTAAAAAAAAACATG
CTTTTTTGGAGAGAGATACTATTTCACCAATCGAGTCACAGGTAT
Right flanking sequence: Indices 90198 -- 90697
GATTTTCCGCAAAGTGGTGACGAAGGGTATAACTTATACAAATCTTTCCATTTTCCAATTCGACC
CGATCCATTCGTTCGTAGAGCTATTTACTCGATCGCAGACATTTCTGGAACACCTCTAACAGAGG
GACAAATAGTCAATTTTGACAGAACTTATTGTCAACCTCTTTCAGATATGAATCTACCTGATTCA
GAAGGGAAGAACTTGCATCAGTATCTCAATTTCAATTCAAACATGGGTTTGATTCACACTCCATG
TTCTGAGAAATATTTACCATCCGAAAAGAGGAAAAAACAGAGTCCTTGTCTAAAAAAATGCCTTG
AGAAAGGGCAGATGTATAGAACCTTTCAACGAGATAGTGCTTTTTCAACTCTCTCCAAATGGAAT
CTATTCCAAACATATATACCATGGTTCCTTACTTCGACAGGGTACAAATATCTAAATCTCATATT
TTTAGATACTTTTTCAGACCTATTGCCGATACTAAGTAGCAGCCA
Found at i:91931 original size:9 final size:9
Alignment explanation
Indices: 91917--91992 Score: 134
Period size: 9 Copynumber: 8.4 Consensus size: 9
91907 TCTTATTGAT
91917 GATAGTGAC
1 GATAGTGAC
91926 GATAGTGAC
1 GATAGTGAC
*
91935 GATAGTGAT
1 GATAGTGAC
91944 GATAGTGAC
1 GATAGTGAC
91953 GATAGTGAC
1 GATAGTGAC
91962 GATAGTGAC
1 GATAGTGAC
*
91971 GATAGTGAT
1 GATAGTGAC
91980 GATAGTGAC
1 GATAGTGAC
91989 GATA
1 GATA
91993 TCGACCGTGA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 63 1.00
ACGTcount: A:0.34, C:0.08, G:0.33, T:0.25
Consensus pattern (9 bp):
GATAGTGAC
Left flanking sequence: Indices 91417 -- 91916
ACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCTACCTTAACGACAGAA
AAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATAACTATGG
TTATCAAATGATTGAACAACCGGGAGCAATTTACTTACGATACTTAGTTGACATTCATAAAAAGT
ATCTAATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTAT
CAGATAATCACTTATTCACAAACCCCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGGAA
ACCCTTTTCGCTCCGCTTAGCCCTACCCCCCCCTAGGGGTATTTTAGTGATAGGTTCTATAGGAA
CTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTATTT
CTGAACAAGTTCCTGGATAACAAGCCTAAGGGTTTTCTTATTGAT
Right flanking sequence: Indices 91993 -- 92492
TCGACCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCACTAACTATGGATATG
ATGCCGGAAATAGACCGATTTTATATCCCCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTG
CATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTC
TATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCT
TCGACTCATATTCCCCAAAAAGTAGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCAT
TAAGATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGG
GATTTCACTTGGAAAAGAAGATGTTCCATACTAATGGATTCGGGTCCATAACTATGGGTTCCAAT
GTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCAATTAGT
Found at i:99559 original size:18 final size:18
Alignment explanation
Indices: 99536--99571 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
99526 TCGATTCATA
99536 CAGATACAGAAGAAAGGG
1 CAGATACAGAAGAAAGGG
99554 CAGATACAGAAGAAAGGG
1 CAGATACAGAAGAAAGGG
99572 TTCTCTATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.33, T:0.06
Consensus pattern (18 bp):
CAGATACAGAAGAAAGGG
Left flanking sequence: Indices 99036 -- 99535
AATCTCCCCCCTTCTTCCACTCCGTCCCGAAGAGTAACTAGGACCAATTCAGTCACGTTTTCATG
TTCCAATTGAACACTTTCCTTTTTTGATTATTCTCAAAGCAAAGGAGAAGATTATTCTTTTTACC
AAACATATGTGGATCCAATCACGATCTTATAATAAGAACAAGAAATCTTTCTCGATCAATCCTTT
TGCCCCCCATTCTTCGAGAATCAGAAAGATCCTTTTCAATCAAGTTTGAATTTGTTCGTTTGGAA
TCTGGACTCTTCTACTGCATTTTTATTTACTTATTTTTTTTTTTGATTTATTTTCTTCCATCATT
CCTTAAGTCCCACGGGTTTGATCCTGTAGAATCTGATCCATTTTCTCATTGAGCGAAAGGTACGA
AATAAATCAGATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTCCTTGGGAGG
TATCGGGAACGGGAAGGAATTGGAATGTAATAATATCGATTCATA
Right flanking sequence: Indices 99572 -- 100071
TTCTCTATTGCTGATTCAAACGCTATACCTACGAGATAGGGATAGAGAAAGAGGAAAAAACCGAA
TTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACCCTTCGAATAGGAA
TCCATTTTCTGAAAGATCCCGGCTTTCGTGCTTTGGTGGGTCTTCGAGATCCTTTCGATGATGAC
CTAGGTTGTGTTGAAGAGATATCTATATGATCCGATCGATTGCGTAAAGCGCGCGGTAGCAACGG
AACCGGGGAGAGTATACAGAAAAGACAGTTCTATTTCTATTCTATTAGTATTTTCTATTAGTATT
AGATTATATTAGTTAGTGATCTCGGCTCAGTGAGTCCTTTCTTTCGTGATGAACTATTGGCACCA
GTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGAGCTCAGCGGCAAGAGGATTGTAACATG
AGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGGTT
Found at i:99889 original size:13 final size:13
Alignment explanation
Indices: 99871--99896 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
99861 TCTATTTCTA
99871 TTCTATTAGTATT
1 TTCTATTAGTATT
99884 TTCTATTAGTATT
1 TTCTATTAGTATT
99897 AGATTATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCTATTAGTATT
Left flanking sequence: Indices 99371 -- 99870
CACGGGTTTGATCCTGTAGAATCTGATCCATTTTCTCATTGAGCGAAAGGTACGAAATAAATCAG
ATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTCCTTGGGAGGTATCGGGAAC
GGGAAGGAATTGGAATGTAATAATATCGATTCATACAGATACAGAAGAAAGGGCAGATACAGAAG
AAAGGGTTCTCTATTGCTGATTCAAACGCTATACCTACGAGATAGGGATAGAGAAAGAGGAAAAA
ACCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACCCTTCGAA
TAGGAATCCATTTTCTGAAAGATCCCGGCTTTCGTGCTTTGGTGGGTCTTCGAGATCCTTTCGAT
GATGACCTAGGTTGTGTTGAAGAGATATCTATATGATCCGATCGATTGCGTAAAGCGCGCGGTAG
CAACGGAACCGGGGAGAGTATACAGAAAAGACAGTTCTATTTCTA
Right flanking sequence: Indices 99897 -- 100396
AGATTATATTAGTTAGTGATCTCGGCTCAGTGAGTCCTTTCTTTCGTGATGAACTATTGGCACCA
GTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGAGCTCAGCGGCAAGAGGATTGTAACATG
AGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGGTTCTGGCAATGCAATGTGGTTG
GACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAG
AGGATAGCAAGTTACAAATTCTGTCTTGGTAGGACATGTATTTTTATTACTATTAAGTATTTTTA
TTACTATTAAATTGACGTAGTTAACGGTGGGGTTACCATTATCCTTTTTTTTGTGGTGACGAATC
TTGTATGTGTTCCTAAGAAAAGGAATTTGTCCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACAC
ATAAGAACTCTTGAATTGAAATGGAAAAATAGATGTAACTCCAGT
Found at i:100218 original size:19 final size:19
Alignment explanation
Indices: 100194--100231 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
100184 GGTAGGACAT
100194 GTATTTTTATTACTATTAA
1 GTATTTTTATTACTATTAA
100213 GTATTTTTATTACTATTAA
1 GTATTTTTATTACTATTAA
100232 ATTGACGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (19 bp):
GTATTTTTATTACTATTAA
Left flanking sequence: Indices 99694 -- 100193
AATAGGAATCCATTTTCTGAAAGATCCCGGCTTTCGTGCTTTGGTGGGTCTTCGAGATCCTTTCG
ATGATGACCTAGGTTGTGTTGAAGAGATATCTATATGATCCGATCGATTGCGTAAAGCGCGCGGT
AGCAACGGAACCGGGGAGAGTATACAGAAAAGACAGTTCTATTTCTATTCTATTAGTATTTTCTA
TTAGTATTAGATTATATTAGTTAGTGATCTCGGCTCAGTGAGTCCTTTCTTTCGTGATGAACTAT
TGGCACCAGTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGAGCTCAGCGGCAAGAGGATT
GTAACATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGGTTCTGGCAATGCAA
TGTGGTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGC
TAGGCAAGAGGATAGCAAGTTACAAATTCTGTCTTGGTAGGACAT
Right flanking sequence: Indices 100232 -- 100731
ATTGACGTAGTTAACGGTGGGGTTACCATTATCCTTTTTTTTGTGGTGACGAATCTTGTATGTGT
TCCTAAGAAAAGGAATTTGTCCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAGAACTC
TTGAATTGAAATGGAAAAATAGATGTAACTCCAGTTACTTCCGAAATGGTAAGATCTTTGGCGCA
AGAACGCAAGAAGAGGGGTTGATCCGTATCATCTTGACTTGGTTCTGATTTCTCTATTTTTGTAA
AAATACCGAGTCGGGTTCTTGTTCTTCTCCTACCCGTATCGAATAGAACATGCTGAGCCAAATCT
TCTTCATGGAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGTACGGTTTTCTGAAATCATGT
GCTATTGCTCGAATCCGCAGTCAATCCTATTTCCGATAGGAGCAGTTGACAATTGAATCCAATTT
TTCTCATTATTTTCGTATCCGTAATATAATAGTGTGAAAAGAAAA
Found at i:199144 original size:17 final size:17
Alignment explanation
Indices: 199118--199152 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
199108 GAGCCTCTTC
*
199118 CAAGACAAGATTATGGG
1 CAAGACAAGATTAGGGG
*
199135 CAAGAGAAGATTAGGGG
1 CAAGACAAGATTAGGGG
199152 C
1 C
199153 TATTCGAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.11, G:0.34, T:0.14
Consensus pattern (17 bp):
CAAGACAAGATTAGGGG
Left flanking sequence: Indices 198618 -- 199117
AGGCGTGGCCCCAGAAGTGCTTTTTCGGAGATAGCGAAAGAAGAGCTTAGCTTAGAAAGTAGTGT
CTCCAAAAGCCGGTCAAACCCGAAGCCCCTCTGGATTAAAAACTTAGCCTTTGAAACCCTCATTC
TCTTATTGTGCAGGCAAAGGCCTTCTTTTCTTCTCGCAACAGACGGTTCGATCAAAGAGTGCAGC
TGGCTAAGCCGCATCTTCTGCTTTAGTTTTAGCGCGAGTGCTTGAAAGTGACTGTCCCCCCTTCT
GCGGGAATGAATGAATGGGATAGTGGAAGGCTCTTTCTCTCTTTCTTTACATCCAATCGCTCTGG
CCTGCTATTGAAGGGATCATACTAATGCATTTCCCGAACAAGAAAAGAAGTAGGTCTTCCCCAGT
GCTGCTTTCTGCCTTCTCTTCGTAGTATCCTCCTAAGCCTAGTCCAGCTGTCCTTGTTATTGCCC
CTCCAGTTCTGGTTCCGGTTGCTGTGGGTCCAGTCGAGCCTCTTC
Right flanking sequence: Indices 199153 -- 199652
TATTCGAGTACTTCTTCCTCTCGAGATTGCTTTTCTTGTTATCAAAAGTAAGGGGCAGGATAAGA
AATAGAGAATCCCCCTATCGATCCCTATCGAGCCAGCCCAGGCTAGGAAATCTCCCTTAGTTTAA
TTAGTCTCTCCAACCCGCCTAGTCAAAAGCCCTTTTTTTGAGTTTCACCTGAATATAAAGAGACC
TTCTATTGGGAGGACTAGTCTTTTTGCGTAAGCCGCCTTGCTCTAAGAATCATCTCTTCTCCCCG
CGAGGGAGTAGCCTTTGCCAAAGAAGCGCTAATTACTTGTTGCATTGCCTGCGTTAGGAGATGAG
TGCACTTGAGAAGAATGAGACATGGGAAAAAGAAGTGAAAACTAAAAAGGGGCCAGAACATAAGG
AGGTGGTAGACAATTTAGAGAGCTTGGAGGAAAAGATCAAGACCATCAAGGGTATAGAGAGGCAC
CAAGTTCGCAGAGATCTGCTTCTTCTCAGACATCAAGCTCCCCCA
Found at i:230688 original size:13 final size:13
Alignment explanation
Indices: 230670--230696 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
230660 AACAGCCCTT
230670 TCTATGTTATTAG
1 TCTATGTTATTAG
230683 TCTATGTTATTAG
1 TCTATGTTATTAG
230696 T
1 T
230697 AAAGAGCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.56
Consensus pattern (13 bp):
TCTATGTTATTAG
Left flanking sequence: Indices 230170 -- 230669
TTCCCTGTATTGGTTATGTTCTTCATTTCTCGTCTAGCAGAAACTAATCGAGCTCCGTTTGATCT
CCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTA
ATTTAATATAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTCATTCTGAC
TGAAACAAGGGGTGGGTCTTTACCAACTTAAAAATAGAAGATTTTAGGTAAGCCAAAAAACGTGA
GCGCCCCTACGCGAGCCTTATTGAAAAGGCCCCTTACTATAGAACAAAGCAAGGGATTGAGCTGC
GCGAAAGCCTCCATTACTAATAAAGGGCTGCATCCGTTTTCTTGCTCGTTAGCGCTCCTTAGCAC
AAGCACTAAGTCAGAAACCTACCTTATTGAAAACTCAAGTAAAGCTATATATATGTATTCTATTA
ATGCGCTCAAGCATGCGAAGAAAGCAACAAGCGAGAACAGCCCTT
Right flanking sequence: Indices 230697 -- 231196
AAAGAGCTGTTCTTGCTTGTTTAGTAAAGTCACGCTTTTCATTTTGATAGGAGTAGGTGCTTGCT
GGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAATGAATGTCGGGTCGGGGCTTTCTGCCTTG
TTATCAAAAAGGGAGTTGGGTAAAGCAAACTCCCTCCCTGGACGAGCACGGGGCTTAGTCAAGTA
GAACCGGGTTGCGCTGCTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACT
GAATATGCGTTAAAAAGGTCAATCCCTCCCCTACGACACCAAAAAAAACCGGGCCGAACTTCTAA
CAGCCCGCCCGCTTCCATAGAACAATATCGTGGCAACGTAGACCTAAGTGGTCATATTGGATCTT
TGGGAACCATCACAAGTGCGGCCGGCCTATCTTTAAACGAGAATGCCGTGTCGTCCAGCGGAGCC
TAGAAGAAGGTGACTCGCGCAGACAGCTGACTCCTTCTTTTCAAT
Found at i:368540 original size:10 final size:10
Alignment explanation
Indices: 368525--368549 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
368515 TCTCGCCCAT
368525 AAGATAAGAG
1 AAGATAAGAG
368535 AAGATAAGAG
1 AAGATAAGAG
368545 AAGAT
1 AAGAT
368550 TGACCATCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.28, T:0.12
Consensus pattern (10 bp):
AAGATAAGAG
Left flanking sequence: Indices 368025 -- 368524
TAACTACGATCTGTCTTCGGTGTTGATATGATCTTTCTATCAAGAAAAGATCGGGAATTGCCGCT
AGGCTTTTCTTTTAGCTCTCACTCATCCCGGGCGATTCTTATTATTTTTTTCTTTGTCACTAAGG
AAGGAGTAGTTGTGGCTTTTGACCAAGAGAACGAGCTAGACAGAAAAGGTACCACCGAAAGAAGG
TCGACCTCACCCCCTTTGGTAAACCGAAGCAGAGAAAGAGGAAGAAGCAAAGCTAGGCCATTCGA
TTAGGGATGTTCTCACCTATGCGTACTCTCTTGAATAAGGAATCTAAAAAAGAACCTTATTCTTT
TTCGCATCTCCCAAGTTCGAATGCTTTTATGCTGTTAAAAGAAATCGAATACCATTCGTGACCCA
ATTCAAAAACGGAGTGACTGAAGACCTCCTCCCCCTTTCCCGCCTATCCCTCCCGCAAGAGAGGA
CTCGTTCTGGCTTTAAAGAGCCTCTTTTTTAGCAGTCTCGCCCAT
Right flanking sequence: Indices 368550 -- 369049
TGACCATCTCTTCTTCCAAGCTTCTTTCTGCTTCTTCTCGGCGTAACGAAAGAACTAGATGAGGA
GAGGCCTCCGGTTTCAAATCCCTACCCTACGCCTTACGAGGGCGCCCTAGCCAGATTCACTCCCA
AGGGTCAATCAAGCCTTTTCAACTAGTTCAAATAGTCGTCACAGTCTTCGTTCCTGCTTTCAACG
AGACTTTCTTAGCTGCATCAGCTTGTAAAACTCTCTCTCCTTCACCAGGAAAGGGAGAGCGGACA
AAGTACCAGACGATTTGGGTTGGGTAAGAAGAGCGTACGATAAGAGTAAGCAGACGATGTCGATA
GAAGACGATTCGTGGGATCTTATCTTCCTCAAAGTCAAAGAAAGAGAAAAATGAGCTAAAGAAGG
TATGCCCAGCCCATGGAATTAGATGTCGAATGAGTACGATTTCGAGCATAAAGAGAGAAGAAAAA
GGAACTTTTTAGCAAGAATCTAGGTTTAGCAAGATAGCTGCCAGA
Found at i:381624 original size:12 final size:12
Alignment explanation
Indices: 381607--381631 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
381597 CGGACCCCTT
381607 ACGAGTGAGCAG
1 ACGAGTGAGCAG
381619 ACGAGTGAGCAG
1 ACGAGTGAGCAG
381631 A
1 A
381632 AAAGGGAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.40, T:0.08
Consensus pattern (12 bp):
ACGAGTGAGCAG
Left flanking sequence: Indices 381107 -- 381606
TGCTCATGGGCAGCTTATCTCTAATTGGATTTCCTTTTCTAACTGGATTTTATTCCAAAGATGTG
ATATTAGAGCTCGCTTACACTAAGTATACCATCAGTGGGAATTTTGCTTTCTGGTTGGGAAGTGT
CTCTGTCCTTTTCACTTCTTATTACTCTTTTCGTTCACTTTTTCTAACATTTCTAGTACCAACTA
ATTCATTCGGGCGAGACATCTTACGATGTCATGATGCGCCCATTCCTATGGCCATTCCTTTAATA
CTTCTGGCTCTCGGGAGTCTCTTTGTAGGATACTTGGCCAAAGTGTGACCCGTTAGCCCATAAGT
AAGTACTGTGACGAAGCGGCTGTTGCTCACCCGACACGATCGTACGAGGTCACAATTCACCCAAC
ACGATCATCCGGGGTGAACAAGAATTGGGGATCGGATGCGGGCGAAATTCCCGCCAATGGCTGAG
ATGTTCAGTCGACTCCCTCCCCCTTTGTGGGGGTCCGGACCCCTT
Right flanking sequence: Indices 381632 -- 382131
AAAGGGAGGAGGAAAGAGGCCCTGGCGAACCGTCATAATTAGTAAACAAGTGTAAGCTTCGCTGC
CCGACAGTATGGAGTACTGACCACACCGAGGGACAGGCCCTGAAGCGAAGGACAGGAACGAGCGG
AATCAATGTGTTCCAATTTCTGGCCTTGCACCGACCATCTAATGGACCATGGACTAAACGGCCAC
TGCCTGAAAGGACTATGCCCCGTGGACCGCCGCCCCCCCCACAAGGTACATCTCGCGCCTATGGG
CCGCTATAACTATCCAAGAAGACACTCGAAACTGGAAGGATAAACAAACCCACCCGGTGGACTGC
CGAGCTACAAGTCCCACGACACAGGAGCGGGATTCTCTAAAAAGCCAAGGTCGCGGGTGGCCAAG
AGGGCCCACTTGGAGACTTGGGATCTCAGCAGGAAATGCGAAGGTTGCTTAAAGCCGGCCGGCCG
ATAGGCGAAAGAGAATCAACTAGTTTAGTTCTGATCTGAGTAGGC
Found at i:414468 original size:18 final size:18
Alignment explanation
Indices: 414428--414470 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
414418 ACCGCCCTGC
414428 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
414447 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
414464 CATAGTC
1 CATAGTC
414471 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 413928 -- 414427
TCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGTTGCTTTTTCAAGTGTCAGTAGCGGGACGT
TCTGTCAATCGGGGAAGGTTTTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGACAT
GAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCA
ATCTACGCAGAGTGAATCGGTCCCTAAGGAAGCCCCGAAAGGGCTGCCGTCCGATGGGTACACGA
AAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGTTAATTGGATGATCGGGC
CGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAAGATGAACCTTGAGTCATCAAAGCCT
TTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGTAGTTGACTTGCTTA
CTCGTTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 414471 -- 414970
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAAATGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:427231 original size:13 final size:13
Alignment explanation
Indices: 427213--427238 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
427203 TGGAGCCTTA
427213 CAACTTTATCAGC
1 CAACTTTATCAGC
427226 CAACTTTATCAGC
1 CAACTTTATCAGC
427239 TCAAGCAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (13 bp):
CAACTTTATCAGC
Left flanking sequence: Indices 426713 -- 427212
TTTCTTTATATACACAATTTTCAGTCTAGTTCGCCACAAGGCATGCAAGCAAGGAAGCTAGCCTA
TGTGGAAGAAAGAAAGAAGTAAAGCTGCACGCAATCCACAACCAAAAGAGAAAAGCCACTCACAC
TCACGGGACAAAGACTCTATTCCACAACTCCTGCAAGAGACGATTCGTTGATAACATCTGAAGCC
TATACTAATTAATATAAAGCCTGCTAAGAGGGGCCTTTCGCCGGTTCAAGTAATGGGAGGCCTTT
GCTGGTCAACTATTTTGAGGCCTTACGATTCACTCAATGGCAGAGGGATCTTGCTCGTCAACGTC
CGTTGCCGATCCGGTCATCTATCTCGGAGTCATCAACATCTGCTTTTCTTCGGGACAAGAATGGT
TATATCCTTGAGCTTATCGTACCTGTCGTCCAATCCATTAGCGTTGCCACCAGCCATTACGAAGA
GAGCCTTGGGGCATCCGCTTAAACCCTACTAGGCTTGGAGCCTTA
Right flanking sequence: Indices 427239 -- 427738
TCAAGCAATTTTTACCTTAGACTGAAGCGCATTCACTCACTCATAGGACGACCATCATGTACTTG
TACTCAAGTGACGATGAACACTGAACCTAACAGCCGAGGAGACGATCTCCGGTACCCATGAAGAG
TAGATTACCAATTCTGTCACCGCGTAATATAAAGTGTAGGGGGCTTTTATGATTACACTACTCAC
GAATCTATCTATCCAATTTCTTACTGAACTTGACTTGTCTCCGATTGCCATGCTGCGCTTTTCGC
TCCTTATCCCGTACAGAACGAAGTGAATCTTATTTAAACATTAATTGCTATGGGCCCTCTTATTG
CACTGAATGACGGATCACATGGGGTGGATCCTACTAATGCAATGTTTTCTCCGTGTAGTAAGGCA
TTTTTCACATCTAGCTTGTATAGGGACCACTTCTTTGATGCAGCAATAGCCAGTAAAGTCCTAAT
CTTCACAACTGGACTGAAGTTAAGGTTTCCTCCAAATCTATCCAA
Found at i:454357 original size:16 final size:16
Alignment explanation
Indices: 454336--454366 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
454326 TCGTTTCTAG
*
454336 TCTATCTCTTTCTATT
1 TCTATCTATTTCTATT
454352 TCTATCTATTTCTAT
1 TCTATCTATTTCTAT
454367 ATGGAAAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.61
Consensus pattern (16 bp):
TCTATCTATTTCTATT
Left flanking sequence: Indices 453836 -- 454335
CAAAGGAGTATCCCGAACCTACACCGAGCGAGGTATTGACGGCGATTCTAAAATATCGCAGAACA
GAATGGGATACGATGAGATAGAATGCAATAGAAACAAAGACAGGGGGAACGGAACGGGTTACCTA
CTCTTAACGGTCAAAGCGAACCCTTTCATTCCGAATTACAGAATTCGGAATGAATCAAATCTCCC
CAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAG
GAACAACGGGAAATTCGAGCTCATAGAGTTCAATTCCCGTTCTCAACCCATGACCAATATGAGCT
CGAAGTTTCCTTCGTAACTCGTGGAACTTCTTCGCAGTGGCTCCGTTCCATGCCTCATTTCATAG
GGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATACTAATTCCATTCATTTAATATC
CCTCTCTTTGTTTGGTGTCATTGAGATAAGAGATGTCGTTTCTAG
Right flanking sequence: Indices 454367 -- 454866
ATGGAAAGTTGAAAAATCATTATATAGTAGAATAGTCCAGAAATAGTCCATGCAATAGAAAGAAA
AAGAAAAGAAAAGAGAGGTTTGCGATGACTTTGATACTGGATAATCTAGTATCCTTATGCATGAA
GATAATGAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGC
CCTCTTATCTCTTCCTTCTTAGAGCTCGGGTTATGGAAGAGGCGACCGAGAAGAAAGCATCAGCA
ACAACTGGGTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTTTGCATCT
AGCATTGGGTAGACCTTATACAATAACGGTCATAGCTCTACCGTATCTTTTATTTCATTTCTTCG
GCAAGAATCACAAACACTTTTTTAATTATGGATACAAGAATCCAAATTCAATACGTAATTTTAGC
ATTCCAAGAATATTCTTTAATAATCTTATTTTTCAGTTATTAAAC
Found at i:457288 original size:12 final size:12
Alignment explanation
Indices: 457271--457295 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
457261 AAATGGATCA
457271 TCAAAAGTATTC
1 TCAAAAGTATTC
457283 TCAAAAGTATTC
1 TCAAAAGTATTC
457295 T
1 T
457296 ATTTCTAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TCAAAAGTATTC
Left flanking sequence: Indices 456771 -- 457270
TATTATATTACCTTCATTGATAATAACTAAAAATATCGTTCGTATACTATTATTTCAATTTCCTG
AATGGTCAGAAGATTTTAGGGATTGGAATAGAGAAATGTATATTAAATGCACCTATAATGGCGTT
CAATTATCCGAACGAGAATTTCCAAAAAAATGGCTAACAGACGGTATTCAGATAAAGATTTTATC
TCCTTTTCGTCTGAAACCTTGGCACAGATCTAAGCTACAATACTCTGAAAAGGAAAAAGATCCAA
TGAAAAAAAAAGGAAAAAAAAAAAAACAGGACTTTTGCTTTTTAACAATTTGGGGAATGGAAGTA
GAATTGCCTTTTTCTGGTTATCCCCGAAATCGACTTTCATTTTTTGATCCCATTTTTAAAGAAAT
AAAAAAAAAAATGAAAAAATTTAATTTTTTTTTTTTTCTAGTCCTAAAAGTTTTAAATGAAAGAA
CTAAATTGTTTCTAAATGTTTCAAAAGGTACAGTAAAATGGATCA
Right flanking sequence: Indices 457296 -- 457795
ATTTCTAAAGGAAAAAATAAAAAAACTCCCCCATTTTTTATTTCTATTTCGATTCAAAAAAAAAT
ATGAATTGAGTAAAAAAAAAAAAGATTCAACAATCAATACGAATAATCCAATAATTTACGAATCA
CCCATTCCAATTCAATCTATTAATTGGACAAATTCTTCATTGACAGAAAAAAAAAAAATAAAAAA
TCGGAATGCTAAAACAAAGACAATCAGAAAGCAAATAGAAAAAATGAAAAAAAAAAAGAAAAGAA
GGGGGTTTATAACTTCAGAGATAAATATTAGTTCGAACAAAACAACTTATGATGCTAAAAGATTA
GAATTACAAAAAAGTATTTGGCAGATATTACAAAGAAAAAATGCTCGATTAGCCCGTAAATCGTA
TTCTTTTTTTCATTTTTTTTTTTTTTTAATGGAAAGGGTATACATAGATATCTTTATATGTATCA
TTAGTATTCCTAGGATCATTCTACAACTTTTTTTTCTTGAATCAA
Found at i:468457 original size:12 final size:12
Alignment explanation
Indices: 468442--468466 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
468432 TTTACTCACT
468442 TTAATTTAATTA
1 TTAATTTAATTA
468454 TTAATTTAATTA
1 TTAATTTAATTA
468466 T
1 T
468467 ATGTAAATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTAATTTAATTA
Left flanking sequence: Indices 467942 -- 468441
TCTATGGATACAAGCTTTTTAATACACCAAATTCTTATTTTTTTGATTCTGGGCCGCGAGAATTA
TTTATTTCGATTTCTATCCTTATACCCGTAATAGGTATTGGTATTTATCCAGATTTCATTTTCGC
ATTTTCGATTGACAAGGTTGAAGCTATTCTATCTCATTTTTTATAGAGAGTTTTCATGAATAAAT
GAATAAAACTAAAAAATCAAAAAGAGAAATAAAACCCCATCCCTATGGACAATGTAAAAAAAAAA
AGATTTTTCCGTTGGATTTACTTTAAATTAAAAAACAAAATGAATTTGAATTGTAATCGAATATG
TTTGTTGTTTGTGAGAACCCCTTGAATCACTACTTGATTAAAAGGGTTCTCGACGATTTATGGAA
AGTTTTCTTAACTTAATATATAATATAATCGGTAAAATCAAATTTCTTATATACATATGCTTTCT
TTATTTTTATTTATATTTGTCAGGTTAGGTTCTTTTTTACTCACT
Right flanking sequence: Indices 468467 -- 468966
ATGTAAATGAACCATAACTATGTAGTCCTATTCCTAATAGATTGATCCCAAAATAACATATCCAA
ATTATAAGAAAGCCCAGAGAAGCCACTATTGAAGAATTTACACCTTCCAATTTTTGATTTTTTCT
AGTATGTAAATAAATTGCGAATATGGTCCAAGTAATAAAGGCCCAAGTTTCCTTTGGATCCCAAT
TCCAATATGATCCCCATGCCTCATTAGCCCATACTGCTCCTGAAAGAATACCTATTGTTAAAAAA
ATAAAACCTAGACTAATAATACGATAACTCCAACGGTCCAATTGTTGAATAAATTGAAACCTGTA
ATAATTTCTAGAAGAAAAAAAAGAAATGTTTCGTAAACCATTGTTTCTTTCATTCATATTTATGT
ATTTGATTTCAGCAAAAGAAAATAATTCATTTAAAAAATATAAATTATTGCTTTTACCAATAATT
TGTATGATTTTGCGAAATGTAATGACTAAAATAGCTACTGATAAT
Found at i:472896 original size:7 final size:7
Alignment explanation
Indices: 472874--472918 Score: 51
Period size: 6 Copynumber: 6.7 Consensus size: 7
472864 TCTTCGTATA
472874 TTTTA-T
1 TTTTATT
472880 TTTTATTT
1 TTTTA-TT
472888 TTTTATT
1 TTTTATT
472895 TTTTATT
1 TTTTATT
*
472902 GTTT-TT
1 TTTTATT
472908 TTTT-TT
1 TTTTATT
472914 TTTTA
1 TTTTA
472919 ACTAACTAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 16 0.47
7 12 0.35
8 6 0.18
ACGTcount: A:0.11, C:0.00, G:0.02, T:0.87
Consensus pattern (7 bp):
TTTTATT
Left flanking sequence: Indices 472374 -- 472873
TACTTTGTTCGTTGGAGCCATAGGAATTAATTTTAACCAAGAAGGGATCGATTTGGACATATTAT
CAAAATTGTTAATTTCGTCTATAGACCCTTTACATCAAAATTCAAACAATTCCGCGGATTGGTAT
GAATTTTTGACAAATGCTACCTTTTCGGTCAGTTTAGCTTTTTTCGGAATATTTATAGCATCTTT
TTTCTATAAGCCTGTTTATTCGGCTTTACAAAATTTGAACTTACTTAATTTATTTGAAAAAAATG
TTCCTAAAAAAATTGTTGCAGATAAAATACGAAATGTCATATATGATTGGTCATATAATCACGGT
TACATAGATGCTTTTTATGGAGTATCTTTAATTGCGAGTGTCAGAAAATTAGCTAAACTAAATTC
TTTTTTTGATAGGCAAGTAATTGATGGAATTCCGAATGGAGTTGGTATTACAAGTTTTTTTATGG
GAGAGGCTATCAAATATGTGGGGGGTGGGCGAATTTCTTCGTATA
Right flanking sequence: Indices 472919 -- 473418
ACTAACTAACATTGAACTTGGTAAAAAAAGGGGGTTTAATAACTGAAAAATAAGATTATTAAAGA
ATATTCTTGGAATGCTAAAATTACGTATTGAATTTGGATTCTTGTATCCATAATTAAAAAAGTGT
TTGTGATTCTTGCCGAAAAAATGAAATAAAAGATACGGTAGAGCTATGACCGTTATTGTATAAGG
TCTACCCAATGCTAGATGCAAAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGTAA
TAAACCCAGTTGTTGCTGATGCTTTCTTCTCGGTCGCCTCTTCCATAACCCGAGCTCTAAGAAGG
AAGAGATAAGAGGGCCCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACGAC
CGAATTCATTATCTTCATGCATAAGGATACTAGATTATCCAGTATCAAAGTCATCGCAAACCTCT
CTTTTCTTTTCTTTTTCTTTCTATTGCATGGACTATTTCTGGACT
Found at i:472896 original size:19 final size:18
Alignment explanation
Indices: 472872--472917 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
472862 TTTCTTCGTA
472872 TATTTTATTTTTATTTTTT
1 TATTTT-TTTTTATTTTTT
* *
472891 TATTTTTTATTGTTTTTT
1 TATTTTTTTTTATTTTTT
472909 T-TTTTTTTT
1 TATTTTTTTT
472918 AACTAACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 7 0.29
18 11 0.46
19 6 0.25
ACGTcount: A:0.11, C:0.00, G:0.02, T:0.87
Consensus pattern (18 bp):
TATTTTTTTTTATTTTTT
Left flanking sequence: Indices 472372 -- 472871
TTTACTTTGTTCGTTGGAGCCATAGGAATTAATTTTAACCAAGAAGGGATCGATTTGGACATATT
ATCAAAATTGTTAATTTCGTCTATAGACCCTTTACATCAAAATTCAAACAATTCCGCGGATTGGT
ATGAATTTTTGACAAATGCTACCTTTTCGGTCAGTTTAGCTTTTTTCGGAATATTTATAGCATCT
TTTTTCTATAAGCCTGTTTATTCGGCTTTACAAAATTTGAACTTACTTAATTTATTTGAAAAAAA
TGTTCCTAAAAAAATTGTTGCAGATAAAATACGAAATGTCATATATGATTGGTCATATAATCACG
GTTACATAGATGCTTTTTATGGAGTATCTTTAATTGCGAGTGTCAGAAAATTAGCTAAACTAAAT
TCTTTTTTTGATAGGCAAGTAATTGATGGAATTCCGAATGGAGTTGGTATTACAAGTTTTTTTAT
GGGAGAGGCTATCAAATATGTGGGGGGTGGGCGAATTTCTTCGTA
Right flanking sequence: Indices 472918 -- 473417
AACTAACTAACATTGAACTTGGTAAAAAAAGGGGGTTTAATAACTGAAAAATAAGATTATTAAAG
AATATTCTTGGAATGCTAAAATTACGTATTGAATTTGGATTCTTGTATCCATAATTAAAAAAGTG
TTTGTGATTCTTGCCGAAAAAATGAAATAAAAGATACGGTAGAGCTATGACCGTTATTGTATAAG
GTCTACCCAATGCTAGATGCAAAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGTA
ATAAACCCAGTTGTTGCTGATGCTTTCTTCTCGGTCGCCTCTTCCATAACCCGAGCTCTAAGAAG
GAAGAGATAAGAGGGCCCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACGA
CCGAATTCATTATCTTCATGCATAAGGATACTAGATTATCCAGTATCAAAGTCATCGCAAACCTC
TCTTTTCTTTTCTTTTTCTTTCTATTGCATGGACTATTTCTGGAC
Found at i:472900 original size:21 final size:19
Alignment explanation
Indices: 472874--472918 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 19
472864 TCTTCGTATA
*
472874 TTTTATTTTTATTTTTTTATT
1 TTTTATTGTT-TTTTTTT-TT
472895 TTTTATTGTTTTTTTTTTT
1 TTTTATTGTTTTTTTTTTT
472914 TTTTA
1 TTTTA
472919 ACTAACTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.30
20 7 0.30
21 9 0.39
ACGTcount: A:0.11, C:0.00, G:0.02, T:0.87
Consensus pattern (19 bp):
TTTTATTGTTTTTTTTTTT
Left flanking sequence: Indices 472374 -- 472873
TACTTTGTTCGTTGGAGCCATAGGAATTAATTTTAACCAAGAAGGGATCGATTTGGACATATTAT
CAAAATTGTTAATTTCGTCTATAGACCCTTTACATCAAAATTCAAACAATTCCGCGGATTGGTAT
GAATTTTTGACAAATGCTACCTTTTCGGTCAGTTTAGCTTTTTTCGGAATATTTATAGCATCTTT
TTTCTATAAGCCTGTTTATTCGGCTTTACAAAATTTGAACTTACTTAATTTATTTGAAAAAAATG
TTCCTAAAAAAATTGTTGCAGATAAAATACGAAATGTCATATATGATTGGTCATATAATCACGGT
TACATAGATGCTTTTTATGGAGTATCTTTAATTGCGAGTGTCAGAAAATTAGCTAAACTAAATTC
TTTTTTTGATAGGCAAGTAATTGATGGAATTCCGAATGGAGTTGGTATTACAAGTTTTTTTATGG
GAGAGGCTATCAAATATGTGGGGGGTGGGCGAATTTCTTCGTATA
Right flanking sequence: Indices 472919 -- 473418
ACTAACTAACATTGAACTTGGTAAAAAAAGGGGGTTTAATAACTGAAAAATAAGATTATTAAAGA
ATATTCTTGGAATGCTAAAATTACGTATTGAATTTGGATTCTTGTATCCATAATTAAAAAAGTGT
TTGTGATTCTTGCCGAAAAAATGAAATAAAAGATACGGTAGAGCTATGACCGTTATTGTATAAGG
TCTACCCAATGCTAGATGCAAAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGTAA
TAAACCCAGTTGTTGCTGATGCTTTCTTCTCGGTCGCCTCTTCCATAACCCGAGCTCTAAGAAGG
AAGAGATAAGAGGGCCCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACGAC
CGAATTCATTATCTTCATGCATAAGGATACTAGATTATCCAGTATCAAAGTCATCGCAAACCTCT
CTTTTCTTTTCTTTTTCTTTCTATTGCATGGACTATTTCTGGACT
Found at i:473473 original size:16 final size:16
Alignment explanation
Indices: 473452--473482 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
473442 AACTTTCCAT
*
473452 ATAGAAATAGATAGAA
1 ATAGAAAGAGATAGAA
473468 ATAGAAAGAGATAGA
1 ATAGAAAGAGATAGA
473483 CTAGAAACGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.23, T:0.16
Consensus pattern (16 bp):
ATAGAAAGAGATAGAA
Left flanking sequence: Indices 472952 -- 473451
GTTTAATAACTGAAAAATAAGATTATTAAAGAATATTCTTGGAATGCTAAAATTACGTATTGAAT
TTGGATTCTTGTATCCATAATTAAAAAAGTGTTTGTGATTCTTGCCGAAAAAATGAAATAAAAGA
TACGGTAGAGCTATGACCGTTATTGTATAAGGTCTACCCAATGCTAGATGCAAAGGCGCATAATA
GATCGATATGAACATCATGAGCTGTCCCGTAATAAACCCAGTTGTTGCTGATGCTTTCTTCTCGG
TCGCCTCTTCCATAACCCGAGCTCTAAGAAGGAAGAGATAAGAGGGCCCTATGGAGAATGTGGTC
AGAAATCCATAATAGAGTCCGACCACAACGACCGAATTCATTATCTTCATGCATAAGGATACTAG
ATTATCCAGTATCAAAGTCATCGCAAACCTCTCTTTTCTTTTCTTTTTCTTTCTATTGCATGGAC
TATTTCTGGACTATTCTACTATATAATGATTTTTCAACTTTCCAT
Right flanking sequence: Indices 473483 -- 473982
CTAGAAACGACATCTCTTATCTCAATGACACCAAACAAAGAGAGGGATATTAAATGAATGGAATT
AGTATATGGATGGAATATAATGAAATAGAGCCACTTTGAGGTTCCCTATGAAATGAGGCATGGAA
CGGAGCCACTGCGAAGAAGTTCCACGAGTTACGAAGGAAACTTCGAGCTCATATTGGTCATGGGT
TGAGAACGGGAATTAAAAAGAACGATTGGCTCTGTATCAATGGAATCTCATCATCCATACATAAC
GAATTGGTGTGGTATATTCAAATCATAACATATGAACAGTAAAAACTAGTAGTCTTATTGAGACT
AGAACTCATAGGGAAGAAAATAGATTTATGAATGGAATAAAATATGCAGTATTTACAGACAAAAG
TATTCGGTTATTGGTGAAAAATCAATATACTTCTAATGTCGAATCGGGATCAACTAGGACAGAAA
TAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTA
Done.