123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_030100
Parameters: 2 7 7 80 10 50 500
Length:  316363

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7795--7846	26	1.9	26	84	7	68	26	40	15	17	1.89
10338--10377	21	1.9	21	85	10	55	27	0	37	35	1.57
16971--17075	34	3.0	34	74	20	126	24	23	38	13	1.91
29906--29981	21	3.8	20	77	10	91	30	19	18	31	1.96
36357--36413	30	1.9	30	100	0	114	28	10	28	33	1.90
47967--48044	31	2.6	31	89	4	115	29	15	24	30	1.95
48384--48429	22	2.1	22	95	0	83	30	17	36	15	1.91
58781--58852	31	2.3	31	100	0	144	20	22	31	25	1.98
85267--85312	24	1.9	24	86	8	67	23	28	17	30	1.97
92256--92314	21	2.9	21	78	19	70	30	20	18	30	1.96
130550--130652	37	2.8	38	79	8	106	33	13	22	30	1.92
130943--131015	36	2.0	36	92	5	121	30	26	12	31	1.92
135592--135622	15	2.1	15	93	0	53	51	22	22	3	1.62
155299--155410	56	2.0	56	100	0	224	25	16	16	42	1.87
218573--218617	22	2.0	22	95	0	81	37	31	6	24	1.81
223006--223044	10	4.2	10	81	18	57	20	0	28	51	1.48
223007--223040	17	2.0	17	100	0	68	23	0	29	47	1.52
228278--228317	20	2.0	20	90	0	62	30	25	17	27	1.97
231449--231517	21	3.3	21	95	0	120	47	7	30	14	1.71
231449--231538	21	4.1	21	91	4	117	48	8	27	14	1.73
242134--242170	18	2.1	18	89	0	56	51	5	21	21	1.68
253968--254012	23	1.9	24	90	4	74	26	15	40	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264515--264555	18	2.3	18	86	0	55	63	9	17	9	1.51
266207--266291	36	2.4	36	97	0	161	28	11	36	23	1.90
266219--266344	42	3.1	42	85	8	158	30	15	33	21	1.94
282503--282548	24	1.9	24	90	0	74	36	26	13	23	1.91
282494--282544	17	2.8	19	79	11	61	37	25	11	25	1.90
283603--283642	21	1.9	21	84	0	53	32	12	15	40	1.84
302868--302934	24	3.6	18	74	25	59	32	7	22	37	1.82
302875--302927	24	2.2	24	96	0	97	33	9	22	33	1.86

Tables:   1

The End!