Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_068893
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 151499
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Found at i:5069 original size:15 final size:15
Alignment explanation
Indices: 5046--5093 Score: 80
Period size: 15 Copynumber: 3.3 Consensus size: 15
5036 GTTTCCTTAG
5046 AAAAGGATTCTATCA
1 AAAAGGATTCTATCA
*
5061 AAAAAGATTCTATCA
1 AAAAGGATTCTATCA
5076 AAAAGGATTCTAT-A
1 AAAAGGATTCTATCA
5090 AAAA
1 AAAA
5094 CAATGATAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 5 0.16
15 26 0.84
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.25
Consensus pattern (15 bp):
AAAAGGATTCTATCA
Left flanking sequence: Indices 4546 -- 5045
AGAAATGTAAAAAATGCTAGACCATCCCCTATTTCTATGTTATACACTTTTTCAATCAAAAATCC
GGGTATCAAATCCAACGAACCCATCATTTGAATCAACAGGTAAAAAATAAAACCTATGGGACGGA
AATAAATAGAACTGCTTATCACGATGAATTATATTTGTTCGATACAATGTTGTCAATATAAACGT
TAAGAAAGGAATACGATGAAAAAAAAACAAGAACTTAAATTGAAAGAATAGTAAAAAAGGGACTT
GTGTTGGATTGGCACTGCATATACATATATACTAAAAATTTTAGTTTAGATAGAGAATAAACAAA
GAAGAAGTAGAAAAAGTATTTATGCAATCAAGAGTGTATTGAATCCATATAGAATAAAGAACTTC
GATTCCTTGTTTCTTACTTGATATTAGAGGTCGAATGAAAACCATCCAATTGCAGGTAATGCCAA
AATATTTCTATTTTGTGAGGATGAATCAAATAAGGGTTTCCTTAG
Right flanking sequence: Indices 5094 -- 5593
CAATGATAACTAGATACGAATAGAAGAAGAAAAGAAGGAAATAAAAAAACATAGTATAGAAAAGA
TATCCAAAATGATATAGAAATCATTATCCTACCCTTATTTTTTATTTCCTTAATTTAATTGAATT
TCATTTGATTAGGGCAAAACCTCTGCCTTTTTTAAAATATCCTGAACAGTTCCTGTAGGCTGAGC
ACCTTTTTCAAGGAAATAGAGAATAGCGGGAACGTTTAAATAAGTTTGATTCTTGATCGGATCAT
AAAAACCCACTTTCTGAAGATCTCTTCCTTCTCTTCGGGATCGAACATCAATTGCAACGATTCGA
TAGACGGCTCATCGGGATAGATGTAGATGAAAAAGAACCCCCCCCCCCCCCTAGAACCGTATAGG
AAGTTTTCTCCTCGTACGGCTCGAGAAAAAATGATGTTTTGTCTATGGATAAAATTAGAATTAGA
ATAAATAGAAAATCTGTAAAATGAATTAGTCTATAATATAATATC
Found at i:5697 original size:3 final size:3
Alignment explanation
Indices: 5679--5752 Score: 93
Period size: 3 Copynumber: 25.0 Consensus size: 3
5669 ACTCAAGTTC
5679 AAT ATAT AAT -AT AAT AAT AAT AAT -AT AAT AAT AAT -AT AAT AATT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
5723 AAT AAT AAT -AT AAT AATT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
5753 TCTCAAATAT
Statistics
Matches: 64, Mismatches: 0, Indels: 14
0.82 0.00 0.18
Matches are distributed among these distances:
2 8 0.12
3 47 0.73
4 9 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
AAT
Left flanking sequence: Indices 5179 -- 5678
TCATTATCCTACCCTTATTTTTTATTTCCTTAATTTAATTGAATTTCATTTGATTAGGGCAAAAC
CTCTGCCTTTTTTAAAATATCCTGAACAGTTCCTGTAGGCTGAGCACCTTTTTCAAGGAAATAGA
GAATAGCGGGAACGTTTAAATAAGTTTGATTCTTGATCGGATCATAAAAACCCACTTTCTGAAGA
TCTCTTCCTTCTCTTCGGGATCGAACATCAATTGCAACGATTCGATAGACGGCTCATCGGGATAG
ATGTAGATGAAAAAGAACCCCCCCCCCCCCCTAGAACCGTATAGGAAGTTTTCTCCTCGTACGGC
TCGAGAAAAAATGATGTTTTGTCTATGGATAAAATTAGAATTAGAATAAATAGAAAATCTGTAAA
ATGAATTAGTCTATAATATAATATCATTTCAAATTTCAATTTAACTCATAGTCATTTTTATTTAG
CTTCGTTCCTGAAAAAAAAATCATTTGTACTCATAACTCAAGTTC
Right flanking sequence: Indices 5753 -- 6252
TCTCAAATATATTAAAGATTTTTCTTTAAGATATTTTTTTATTGAGTGGTCTTTAACCCACCGTT
TTTGTCTCGTTTAAAATTTATTTGGATTCTTTATTCGGATCCGTGAGACAATTGAAGTGGTGTTT
CCTTGTTCTGGGATCCTTTATTTTTGTTTTAAATCATTGGGTTTAGACATTACTTCGGTGCTTCT
TAATCCTTTCAAAATGGTAGCAACATACCCCTTTTGGGATTTCTTTCTATCAAAGAATCATACCG
AGGTTGATTCATGCGCGATACACTGTCGATCGAAAAAGTTTTAGCCGTTCCAACAATTTTGAAAA
TTTGTTCGAATGGAATCCTTTCGATTTCTATATCGAAGATATACTTACGAAGTTGTTCCAATTTA
TTAATTGGCATTAACCCTAGATCGTTGCCCCTGAGAAATTAATAAATACTTTCTACTCGAGCTCC
ATCATGAACTATTTACATTAGAACCCAATAAAAAAAGAAGGGTTC
Found at i:5700 original size:11 final size:11
Alignment explanation
Indices: 5679--5752 Score: 84
Period size: 11 Copynumber: 6.8 Consensus size: 11
5669 ACTCAAGTTC
5679 AATATATAATAT
1 AATA-ATAATAT
5691 AATAATAATA-
1 AATAATAATAT
5701 ATATAATAATA-
1 A-ATAATAATAT
5712 ATATAATAAT-T
1 A-ATAATAATAT
5723 AATAATAATAT
1 AATAATAATAT
*
5734 AATAATTA-AT
1 AATAATAATAT
5744 AATAATAAT
1 AATAATAAT
5753 TCTCAAATAT
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
10 18 0.32
11 34 0.61
12 4 0.07
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AATAATAATAT
Left flanking sequence: Indices 5179 -- 5678
TCATTATCCTACCCTTATTTTTTATTTCCTTAATTTAATTGAATTTCATTTGATTAGGGCAAAAC
CTCTGCCTTTTTTAAAATATCCTGAACAGTTCCTGTAGGCTGAGCACCTTTTTCAAGGAAATAGA
GAATAGCGGGAACGTTTAAATAAGTTTGATTCTTGATCGGATCATAAAAACCCACTTTCTGAAGA
TCTCTTCCTTCTCTTCGGGATCGAACATCAATTGCAACGATTCGATAGACGGCTCATCGGGATAG
ATGTAGATGAAAAAGAACCCCCCCCCCCCCCTAGAACCGTATAGGAAGTTTTCTCCTCGTACGGC
TCGAGAAAAAATGATGTTTTGTCTATGGATAAAATTAGAATTAGAATAAATAGAAAATCTGTAAA
ATGAATTAGTCTATAATATAATATCATTTCAAATTTCAATTTAACTCATAGTCATTTTTATTTAG
CTTCGTTCCTGAAAAAAAAATCATTTGTACTCATAACTCAAGTTC
Right flanking sequence: Indices 5753 -- 6252
TCTCAAATATATTAAAGATTTTTCTTTAAGATATTTTTTTATTGAGTGGTCTTTAACCCACCGTT
TTTGTCTCGTTTAAAATTTATTTGGATTCTTTATTCGGATCCGTGAGACAATTGAAGTGGTGTTT
CCTTGTTCTGGGATCCTTTATTTTTGTTTTAAATCATTGGGTTTAGACATTACTTCGGTGCTTCT
TAATCCTTTCAAAATGGTAGCAACATACCCCTTTTGGGATTTCTTTCTATCAAAGAATCATACCG
AGGTTGATTCATGCGCGATACACTGTCGATCGAAAAAGTTTTAGCCGTTCCAACAATTTTGAAAA
TTTGTTCGAATGGAATCCTTTCGATTTCTATATCGAAGATATACTTACGAAGTTGTTCCAATTTA
TTAATTGGCATTAACCCTAGATCGTTGCCCCTGAGAAATTAATAAATACTTTCTACTCGAGCTCC
ATCATGAACTATTTACATTAGAACCCAATAAAAAAAGAAGGGTTC
Found at i:5700 original size:18 final size:18
Alignment explanation
Indices: 5685--5750 Score: 107
Period size: 18 Copynumber: 3.6 Consensus size: 18
5675 GTTCAATATA
5685 TAAT-ATAATAATAATAAT
1 TAATAATAAT-ATAATAAT
5703 ATAATAATAATATAATAAT
1 -TAATAATAATATAATAAT
5722 TAATAATAATATAATAAT
1 TAATAATAATATAATAAT
5740 TAATAATAATA
1 TAATAATAATA
5751 ATTCTCAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
18 29 0.63
19 12 0.26
20 5 0.11
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TAATAATAATATAATAAT
Left flanking sequence: Indices 5185 -- 5684
TCCTACCCTTATTTTTTATTTCCTTAATTTAATTGAATTTCATTTGATTAGGGCAAAACCTCTGC
CTTTTTTAAAATATCCTGAACAGTTCCTGTAGGCTGAGCACCTTTTTCAAGGAAATAGAGAATAG
CGGGAACGTTTAAATAAGTTTGATTCTTGATCGGATCATAAAAACCCACTTTCTGAAGATCTCTT
CCTTCTCTTCGGGATCGAACATCAATTGCAACGATTCGATAGACGGCTCATCGGGATAGATGTAG
ATGAAAAAGAACCCCCCCCCCCCCCTAGAACCGTATAGGAAGTTTTCTCCTCGTACGGCTCGAGA
AAAAATGATGTTTTGTCTATGGATAAAATTAGAATTAGAATAAATAGAAAATCTGTAAAATGAAT
TAGTCTATAATATAATATCATTTCAAATTTCAATTTAACTCATAGTCATTTTTATTTAGCTTCGT
TCCTGAAAAAAAAATCATTTGTACTCATAACTCAAGTTCAATATA
Right flanking sequence: Indices 5751 -- 6250
ATTCTCAAATATATTAAAGATTTTTCTTTAAGATATTTTTTTATTGAGTGGTCTTTAACCCACCG
TTTTTGTCTCGTTTAAAATTTATTTGGATTCTTTATTCGGATCCGTGAGACAATTGAAGTGGTGT
TTCCTTGTTCTGGGATCCTTTATTTTTGTTTTAAATCATTGGGTTTAGACATTACTTCGGTGCTT
CTTAATCCTTTCAAAATGGTAGCAACATACCCCTTTTGGGATTTCTTTCTATCAAAGAATCATAC
CGAGGTTGATTCATGCGCGATACACTGTCGATCGAAAAAGTTTTAGCCGTTCCAACAATTTTGAA
AATTTGTTCGAATGGAATCCTTTCGATTTCTATATCGAAGATATACTTACGAAGTTGTTCCAATT
TATTAATTGGCATTAACCCTAGATCGTTGCCCCTGAGAAATTAATAAATACTTTCTACTCGAGCT
CCATCATGAACTATTTACATTAGAACCCAATAAAAAAAGAAGGGT
Found at i:25089 original size:15 final size:15
Alignment explanation
Indices: 25069--25099 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
25059 GAAGGCCACC
25069 ATTGACTAGTTTTCT
1 ATTGACTAGTTTTCT
25084 ATTGACTAGTTTTCT
1 ATTGACTAGTTTTCT
25099 A
1 A
25100 AATAGTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.52
Consensus pattern (15 bp):
ATTGACTAGTTTTCT
Left flanking sequence: Indices 24569 -- 25068
AGATGTGAGTAAAACTCAAATTGGAGAGGAATATGGTCCTTGGGTTCCTTTTATTGGAACTATGT
TTCTATTTATTTTTGTTTCTAATTGGTCAGGCGCCCTTTTACCTTGGAAAATCATACAATTACCT
CATGGGGAGTTAGCCGCACCCACGAATGATATAAATACTACTGTTGCTTTGGCTTTACTCACGTC
AGTGGCATATTTCTATGCGGGTCTTAGCAAAAAAGGATTAAGTTATTTCGGGAAATATATTCAAC
CAACTCCAATTCTTTTACCTATTAACATCTTAGAAGATTTTACAAAGCCCCTATCACTTAGTTTT
CGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTC
GGTGGTTCCTATCCCTGTCATGTTCCTTGGATTATTTACAAGTGGTATTCAAGCTCTTATTTTTG
CAACTTTAGCCGCGGCTTATATAGGTGAATCCATGGAAGGCCACC
Right flanking sequence: Indices 25100 -- 25599
AATAGTCTTTTTTTTTAGTTTAATCTAAGGCAATGTGTGCATGGCTAAAAAAATTTACTTAGGGA
ATAAAAATATACAACTACACTATATACGATCTCGAGTAATAGAAAAAAAGATTACAATAAAGATT
ACAATATTGATATTAGAGTAGAAAAAAAGGAAAGAGATCTCAAAGATCTTTTTCCTAAAATTCCC
GTTTGGTCCATTTATACCATAATCAAACCTTCCCCTCAATGAATATTCAATTTAGATTGGTCATC
CAATCCGAATATGAACTATTTGGACTCCTAATTTGACTAAGAAGTCTTGCGATATTACGACGTGT
TATTAAATAAAAAGGATGTTCTATCAAACGATTCGCCTTTTGAGTTGATTTTATTCAACGATTGA
CCAAACGAAAATATTAATAAATAATAAATTGTATGAACTTAGATCAATCAAATTAATTTCTATGC
AACGATTCGGCCCAATCAATTTATCCATTGATTATCTTATCAATT
Found at i:25228 original size:12 final size:12
Alignment explanation
Indices: 25211--25235 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25201 TAATAGAAAA
25211 AAAGATTACAAT
1 AAAGATTACAAT
25223 AAAGATTACAAT
1 AAAGATTACAAT
25235 A
1 A
25236 TTGATATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
AAAGATTACAAT
Left flanking sequence: Indices 24711 -- 25210
GCCGCACCCACGAATGATATAAATACTACTGTTGCTTTGGCTTTACTCACGTCAGTGGCATATTT
CTATGCGGGTCTTAGCAAAAAAGGATTAAGTTATTTCGGGAAATATATTCAACCAACTCCAATTC
TTTTACCTATTAACATCTTAGAAGATTTTACAAAGCCCCTATCACTTAGTTTTCGACTTTTCGGA
AATATATTAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTCGGTGGTTCCTAT
CCCTGTCATGTTCCTTGGATTATTTACAAGTGGTATTCAAGCTCTTATTTTTGCAACTTTAGCCG
CGGCTTATATAGGTGAATCCATGGAAGGCCACCATTGACTAGTTTTCTATTGACTAGTTTTCTAA
ATAGTCTTTTTTTTTAGTTTAATCTAAGGCAATGTGTGCATGGCTAAAAAAATTTACTTAGGGAA
TAAAAATATACAACTACACTATATACGATCTCGAGTAATAGAAAA
Right flanking sequence: Indices 25236 -- 25735
TTGATATTAGAGTAGAAAAAAAGGAAAGAGATCTCAAAGATCTTTTTCCTAAAATTCCCGTTTGG
TCCATTTATACCATAATCAAACCTTCCCCTCAATGAATATTCAATTTAGATTGGTCATCCAATCC
GAATATGAACTATTTGGACTCCTAATTTGACTAAGAAGTCTTGCGATATTACGACGTGTTATTAA
ATAAAAAGGATGTTCTATCAAACGATTCGCCTTTTGAGTTGATTTTATTCAACGATTGACCAAAC
GAAAATATTAATAAATAATAAATTGTATGAACTTAGATCAATCAAATTAATTTCTATGCAACGAT
TCGGCCCAATCAATTTATCCATTGATTATCTTATCAATTTAGGTTGCAGGATAATGATAGGAAGG
GAAAGGAAAATTGATAACAAAGGGGATTCATAAATGGTTCGTAGAGGGAAGGTCGAACTAGGTAT
ATGGAATTGAATGGCGATAAGTTAACTCTTGTCAAGGGTTAGACG
Found at i:30306 original size:21 final size:22
Alignment explanation
Indices: 30274--30316 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
30264 TGTGAACCAA
*
30274 CTTACAAAAAAAGGATACCCAT
1 CTTACAAAAAAACGATACCCAT
30296 CTTAC-AAAAAACGATACCCAT
1 CTTACAAAAAAACGATACCCAT
30317 AACATCTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.49, C:0.26, G:0.07, T:0.19
Consensus pattern (22 bp):
CTTACAAAAAAACGATACCCAT
Left flanking sequence: Indices 29774 -- 30273
TAAAAAAATATCTGGAAAAAAATTGCGTCCAATAGGATTTGAACCTATACTAAAGGTTTAGAAGA
CCTCTGTCCTATCCATTAGACAATGGACGCTTTTCATTATGATTTTTGGGTATTTTTACTTTATT
ATCTTTTATTTGAAAAAAAAAAAAGAATCAAATTAGTAGGATTTATAAAAAATTTTGAATTGTAT
ATTCAACGATGAATGATGTATTAATTAGTGTCTATTAGAGTATTTAAGAATCTATAAATATAGTA
TAGTAATATGATAGAATAAATATAATAAATATTTAATTTAAATATATATATATATAAGAGAGGGT
ATAGAGCGGGTAGCGGGAATCGAACCCGCATCGTTAGCTTGGAAGGCTAGGGGTTATAGTCGACG
TCGATTCATCATTTTTAACGTCTCTAATTCAAAACCGAACATGAAACTTTGGTTTCATTCGGCTC
CTTTATGGAAAATGGAGAAATTGCTAGATTTAAGATGTGAACCAA
Right flanking sequence: Indices 30317 -- 30816
AACATCTATGTCAGCTTTTTGTTTGAATCTATTCAATTCAAAACGACTCGCTTTCTAGATGATCC
CTCTAGAAGAAGGCGATTCTAACAATCTTTCTAGTTACTTCGTTCTCTATTTCTATTTGAGAGGA
TCCTAAGGAAAAGTATTTTATTTCCACCGAGCTAAAATAAAATGTCGATGTCTCTAGTAAACTAA
AGACATTCTTTAATAGCTATTTTGCTTCAATTTATTCGCTACAAATAAAAAAATTGAAGATTTAG
TTACGATTAGAAATTAGAAATCTATTTATCTATCTTCATCCATGGATTCTTTATTCATACTCATT
CAATTGGAAGTATTGATCCAATTTTAAAATTTTGTTTCGCAATTTCATAATCCAAGTTTTCAGTT
TTTAATTGACTTTTAGATAAAAACCCCGAAAATTTATATTTTTCCTTGAACGTGTCATTGAAAGG
GAAAGGATTTATTTAATCCTTTTAATGAAATAAAGTTTTTGATCG
Found at i:31700 original size:18 final size:18
Alignment explanation
Indices: 31669--31703 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
31659 ATCTATAATA
31669 ATATAATATATTCTATAG
1 ATATAATATATTCTATAG
31687 ATATAGATAT-TTCTATA
1 ATATA-ATATATTCTATA
31704 TTTAGATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (18 bp):
ATATAATATATTCTATAG
Left flanking sequence: Indices 31169 -- 31668
TTCATAGAATAACGATATTATTATTATTAATAGTAATAAAAAAGTAACCAACTGTATAATATTAT
CAGCTAATGAGTTTAGTTATAGTTATCACGAATAATGATAAGTCATCTGTTGAATCACTAAAAAT
TCCTATTTTCAATTAGGCCAATGAAATCCATTGTAAAGATTAGAAATCAATAAAAGAAAAATAAG
TGGACCTGACCCATTGAATCATGACTATATCCGCTATTCTGATATTCAAATTCAATAGAGATGAA
ATTGGAACAAGTTGACCCACTTTTCTTTTCTATTTATTTTCATTTCTTTGGACTCTGCAAGAATT
TGTCGATATTTCCAATTCAATCGTCTTGTCTTGTTCCTAGATGTTCTATAGGAAAAAATTGTCAT
TTCGTTCCTCCACGGAGAACCTTTTATTCTAAATTCTAAATCACAGGATAAGAAAAAAATTCACT
ATCTTTCTTTGATTACAGGATCAAGATTCATTTATATCTATAATA
Right flanking sequence: Indices 31704 -- 32203
TTTAGATTTATAGCTATCAGATCGCGGCTTGATGTACCAAAAATTTCCATTTCGTTGCATCCAAT
ATTTTTGTTCCGACAATCGTATGAAGAAAGGATGCAAGATAAATACTATCATTTCCAATCTCCTA
TTTGAATATTGTATTGAAGTTAAGTAAAAAATTGGAAACCCTCTCTTTTCTAAAAGGGAAAAATA
AATAGAAAAAGATTAGTAATTTAGTCTACATAAAAATTAGAATATAAAGAGAGTTCTTTTTCTTA
ATCTCATGAACAAGATCTAAGAATCCATTTAGTTGATGGAAGAAAAGGGGGGCAGGCCTGAGGAT
CAACCGGTAGTGGGCGAGGAGATTGCTTTTTCCTTGACCAGTTCTTTCAAAAAACGAATCAATCG
GATTCATGGGTCATAAGAAGATAATTCATGATTCAGATGCTTAATAATAAGAAGGAATAATCAAA
TTGAATTCATGGATTTACCCGGCAATTTATGGTCCAATAAAGGAT
Found at i:46065 original size:17 final size:17
Alignment explanation
Indices: 46043--46077 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
46033 CCAGATCGTT
46043 ATATTCTATATATAGAA
1 ATATTCTATATATAGAA
46060 ATATTCTATATATAGAA
1 ATATTCTATATATAGAA
46077 A
1 A
46078 AAGAAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (17 bp):
ATATTCTATATATAGAA
Left flanking sequence: Indices 45543 -- 46042
GGCGAGCTCCCGGAATAGTCGGGGCCATACCCAACCGAAAAAGGATGTTATCCAGGCGCATTTCA
AGTAATTGTAGTAAAACTTGACCTGTTGACCCCTTTGCCTTTCCGGCGATACGAACGTATTTAAG
TAATTGTCGTTCTGTAAGACCATAATGAAAACGCAATTTTTGTTTTTCTTCTAGACGAATACGAT
ATTGGGATTTTTTCCCGGAACGCGATTGGTTTCTAAGATCACTTCCAGGTCTGAGCCTTTTATTA
GTTAGCCCTGGTAAAGCCCCCAGGCGACGTATTTTTTTGAAACGAGGACCTCGGTAACGCGACAT
AAAGACTCCTTCTTTATATTTAATTTTAATTAATTCTTATTGATGAAATTTCATTCTACAGAATA
AACCTAAACTAAAAATGAACTAAATTCTAAATAAAGCCAAATTTACTGATATTCTATTCTATTAA
ACATTAAAGAATAATGAGATGAGTTGGATAAATATCCAGATCGTT
Right flanking sequence: Indices 46078 -- 46577
AAGAAAAGATATAGAAAAAGAAAAGGATTCTTTTCGTGAGATAGTTGGAAATTCCTATAACATAA
TAAATCAATGGCTCTTGCGAAAAGAGAAAGACATTTTTTCGCTTAGATTTCAAAGCTGCATTATA
AATCATGTAAAAAATCGAATAAACTAAATAGAGAAAAGCCGACTATCGGAATCGAACCGATGACC
ATCGCATTACAAATGCGATGCTCTAACCTCTGAGCTAAGCAGGCTCGCATAACATAAATTCGACA
TGCATAGGAATTCCATAAACTCTTAGAATCTTTCCTATTAACTATTTTAATTCTTGGCTATTCAT
ATTCGCTATTCATAATATATATATATTTATTTAATTAAAGAATAGAATTTCAAATGAATAGAATT
TCAAATAACTGTTAAATATTATAGAACATAACGATTAATCTAGCGATATAGAACTAGTCATAAAA
AAAAAAAAAAAGAATCGACCGTTCAAGTATTCAAAATTTCATGGC
Found at i:46089 original size:17 final size:17
Alignment explanation
Indices: 46069--46102 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
46059 AATATTCTAT
46069 ATATAGAAAAAGAAAAG
1 ATATAGAAAAAGAAAAG
46086 ATATAGAAAAAGAAAAG
1 ATATAGAAAAAGAAAAG
46103 GATTCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.12
Consensus pattern (17 bp):
ATATAGAAAAAGAAAAG
Left flanking sequence: Indices 45569 -- 46068
ATACCCAACCGAAAAAGGATGTTATCCAGGCGCATTTCAAGTAATTGTAGTAAAACTTGACCTGT
TGACCCCTTTGCCTTTCCGGCGATACGAACGTATTTAAGTAATTGTCGTTCTGTAAGACCATAAT
GAAAACGCAATTTTTGTTTTTCTTCTAGACGAATACGATATTGGGATTTTTTCCCGGAACGCGAT
TGGTTTCTAAGATCACTTCCAGGTCTGAGCCTTTTATTAGTTAGCCCTGGTAAAGCCCCCAGGCG
ACGTATTTTTTTGAAACGAGGACCTCGGTAACGCGACATAAAGACTCCTTCTTTATATTTAATTT
TAATTAATTCTTATTGATGAAATTTCATTCTACAGAATAAACCTAAACTAAAAATGAACTAAATT
CTAAATAAAGCCAAATTTACTGATATTCTATTCTATTAAACATTAAAGAATAATGAGATGAGTTG
GATAAATATCCAGATCGTTATATTCTATATATAGAAATATTCTAT
Right flanking sequence: Indices 46103 -- 46602
GATTCTTTTCGTGAGATAGTTGGAAATTCCTATAACATAATAAATCAATGGCTCTTGCGAAAAGA
GAAAGACATTTTTTCGCTTAGATTTCAAAGCTGCATTATAAATCATGTAAAAAATCGAATAAACT
AAATAGAGAAAAGCCGACTATCGGAATCGAACCGATGACCATCGCATTACAAATGCGATGCTCTA
ACCTCTGAGCTAAGCAGGCTCGCATAACATAAATTCGACATGCATAGGAATTCCATAAACTCTTA
GAATCTTTCCTATTAACTATTTTAATTCTTGGCTATTCATATTCGCTATTCATAATATATATATA
TTTATTTAATTAAAGAATAGAATTTCAAATGAATAGAATTTCAAATAACTGTTAAATATTATAGA
ACATAACGATTAATCTAGCGATATAGAACTAGTCATAAAAAAAAAAAAAAAGAATCGACCGTTCA
AGTATTCAAAATTTCATGGCGAAATGAGTGTAAGAGAGACAGATG
Found at i:46463 original size:16 final size:16
Alignment explanation
Indices: 46442--46473 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
46432 TTTAATTAAA
46442 GAATAGAATTTCAAAT
1 GAATAGAATTTCAAAT
46458 GAATAGAATTTCAAAT
1 GAATAGAATTTCAAAT
46474 AACTGTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.31
Consensus pattern (16 bp):
GAATAGAATTTCAAAT
Left flanking sequence: Indices 45942 -- 46441
TAAAAATGAACTAAATTCTAAATAAAGCCAAATTTACTGATATTCTATTCTATTAAACATTAAAG
AATAATGAGATGAGTTGGATAAATATCCAGATCGTTATATTCTATATATAGAAATATTCTATATA
TAGAAAAAGAAAAGATATAGAAAAAGAAAAGGATTCTTTTCGTGAGATAGTTGGAAATTCCTATA
ACATAATAAATCAATGGCTCTTGCGAAAAGAGAAAGACATTTTTTCGCTTAGATTTCAAAGCTGC
ATTATAAATCATGTAAAAAATCGAATAAACTAAATAGAGAAAAGCCGACTATCGGAATCGAACCG
ATGACCATCGCATTACAAATGCGATGCTCTAACCTCTGAGCTAAGCAGGCTCGCATAACATAAAT
TCGACATGCATAGGAATTCCATAAACTCTTAGAATCTTTCCTATTAACTATTTTAATTCTTGGCT
ATTCATATTCGCTATTCATAATATATATATATTTATTTAATTAAA
Right flanking sequence: Indices 46474 -- 46973
AACTGTTAAATATTATAGAACATAACGATTAATCTAGCGATATAGAACTAGTCATAAAAAAAAAA
AAAAAGAATCGACCGTTCAAGTATTCAAAATTTCATGGCGAAATGAGTGTAAGAGAGACAGATGT
ATAGGGTATGTATCCACCTATATTGAATTGCGGATACAGAAATGATAAAATCGTTTTTGATTGGA
CCGAATAAGAGCCTCCTATACAAAAAGAAGATAGACAAGAAATCAAAGACAAAGAGGAGAAAACA
CTTTTTCGAGACAGGAATCGGCATCTATCTAATGAATTCAACGGTTCCCTTATAAATGAAAGAAA
AAAGGGACGGGATCATAATGAGATTTTCATCTCAAAAAGGGGGATATGGCGAAATAGGTAGACGC
TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATAACTTTCAAATTCAGAG
AAACCCTGGAATTAAGAAAAATGGGCAATCCTGAGCCAAATCACG
Found at i:47942 original size:14 final size:15
Alignment explanation
Indices: 47918--47947 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
47908 AGAGTTTATT
47918 ATACAATACATACAA
1 ATACAATACATACAA
47933 ATAC-ATACATACAA
1 ATACAATACATACAA
47947 A
1 A
47948 GTATGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (15 bp):
ATACAATACATACAA
Left flanking sequence: Indices 47418 -- 47917
CAAAATTCCTTATCTTTCCCATTCACTACTCTTTATACAATTATACAAAAGGATCTGAGCAGAAA
AGCTGTTCTCTTATCACATCACACGGGATATATATGATAGATGTACAAATGAACATCTTTGAGCA
AGGAATCCCCGTGTGAATGATTCACGATCGAGATTTTTATTCATACTGAAGTTATTCTTTTGCCA
AATTATAGGACCTGGATGAGGCTTTGTAATACCCTTTCAATTGACATAGACCCACGTTGTCTAGT
AAAATGAAAATGAGGATGCGACATCAGGAATAGTTGGGATAGCTCAGTTGGTAGAGCAGAGGACT
GAAAATCCTCGTGTCACCAGTTCAAATCTGGTTCCTGACACACGATTAATTTGTATGAGTCTCTA
TTCTACTAATTGATATGAATACATATTCATTAAGACTATAGATAATAATACATATTATCCATCTC
GGTCTTTAGAGATATACCTTTTTATAGAGGCGTAAAGAGTTTATT
Right flanking sequence: Indices 47948 -- 48447
GTATGTAAAAAAATGAGTTCTATTTTCGCTTCTTTTTGATTTCTCCTCTGGTTGAAAAAGAATGT
TAATACTTCATACACATATACATATTCCAAGGTTAAGGTTGAAACATTCAATAGAGTAGGTGAAG
GATGCCAATAAACAAGATTCAGTTCAGATACTGTAAAATAAAAAAATCCGATTTCTTTTCAGTTA
TTTGTATTTTCCTTTCTATTCCATTTTTCATTTCCTCCTACATTACATAACTTTCTAGATTCCCC
CTAAGTGATGTGTGCAGTCCAAAGTTGATGCTGCAGAATTCATTTGGTTCCTCCTATCGACTTGG
CTCATCCAAAAGAAGTATTTTCAAAATTTTAGAATCCCAATGAATCACTAATTTTATTGTATTTT
TTTTAGTCTATACATAATAAAAATACAAACCATAATACAAACGAGACTTCAATTACTCTGTTTAA
TCTATATCTATAATCTAGAATAGAACCTTGAATCTATAGAATTGT
Found at i:51208 original size:13 final size:13
Alignment explanation
Indices: 51190--51268 Score: 95
Period size: 13 Copynumber: 5.8 Consensus size: 13
51180 TTTTTTATTT
51190 TTGAATATTAATA
1 TTGAATATTAATA
* *
51203 TTGAATATTTTATTT
1 TTGAATA--TTAATA
51218 TTGAATATTAATA
1 TTGAATATTAATA
*
51231 TTGAATATTATATTT
1 TTGAATATTA-A-TA
51246 TTGAATATTAATA
1 TTGAATATTAATA
51259 TTGAATATTA
1 TTGAATATTA
51269 TAAGGCTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
13 32 0.57
14 2 0.04
15 22 0.39
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (13 bp):
TTGAATATTAATA
Left flanking sequence: Indices 50690 -- 51189
AAGTAAGGTATACGAAGGAAAGCCCCTTTTACGTTGTTGCCAATGTTTACAATGAAACTTACATT
AGCAAATTGGTTTTTAAAGCTTTATCTTGTGCACAACTACCGCACAATACCTACGTAAATTACTA
TTAGATTTGATTGGGGTTGGGTTAGTTGGAGTTTTTAACCAGACTCGTGTCATGATACAAAATTC
ACTCGAATTGGATATACCAAACCAAAGAAGGGTAGTAGAATTAACTCGTTGATTTCGGACAGGAA
AAGAGGAAAATTCCATATGCATTTTCCTACGAAGAGTAATGAAGAAAAGTTGGTTTGTTTATCCA
CAACTGGAAAAGATAAATTGGGTCCATTGAAATGAAATTTGTTTTTGCTTTGATATTCTACTTTA
AACGATTCCCGTGGATGGGCTTATAGGAATGATTGTCTTTTGATGAAGCAATAAGTCACTTAAAA
AAATAACGAGGAAATTCAAATAAAAAAGGACCAAATTTTTTATTT
Right flanking sequence: Indices 51269 -- 51768
TAAGGCTTTAGGGCTATACGGGCTCGAACCGTAGACCTTCTCGGTAAAACAGATCAAACTTATTA
TTATCAAAATGATATGAACTGTTTCAAAGACCCAACATGCATTTTTTGTGCATTGGGCTCTTTCA
TTAACTGATAGAAATATCAGCTAGTCCGCCATTTTTATTTTTGACAGAAAAATAAGGAGATGGCT
CCATGTGCTCTGAGTCATTATGTGGATTCAGATTCAGGAACACTACCAAAGTTTTTCAAGGGGGG
TTATCTTGACGTAGGTCTGCCTCTGGCCTAGATTAACCTAAGTGAAATGAAGTCTCTATCGCTCT
ACTTAAAAATCAAATATGAAACTTCATACACCTTAAAGTTCATAGGACGAAAAGAGATTTTTTTG
AGGCCCTGATACTCAGCCTAGCATTGAATAGACTGGGTATTCACCTTATCAATATATCAAATCAA
TGATGGGGGTCTGTTTGGCACCTAATTAGCACCTAAATTGACCGA
Found at i:51223 original size:15 final size:15
Alignment explanation
Indices: 51182--51254 Score: 73
Period size: 15 Copynumber: 5.1 Consensus size: 15
51172 GGACCAAATT
51182 TTTTATTTTTGAATA
1 TTTTATTTTTGAATA
* *
51197 --TTAATATTGAATA
1 TTTTATTTTTGAATA
51210 TTTTATTTTTGAATA
1 TTTTATTTTTGAATA
* *
51225 --TTAATATTGAATA
1 TTTTATTTTTGAATA
*
51238 TTATATTTTTGAATA
1 TTTTATTTTTGAATA
51253 TT
1 TT
51255 AATATTGAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
13 22 0.49
15 23 0.51
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (15 bp):
TTTTATTTTTGAATA
Left flanking sequence: Indices 50682 -- 51181
CTAGGTCTAAGTAAGGTATACGAAGGAAAGCCCCTTTTACGTTGTTGCCAATGTTTACAATGAAA
CTTACATTAGCAAATTGGTTTTTAAAGCTTTATCTTGTGCACAACTACCGCACAATACCTACGTA
AATTACTATTAGATTTGATTGGGGTTGGGTTAGTTGGAGTTTTTAACCAGACTCGTGTCATGATA
CAAAATTCACTCGAATTGGATATACCAAACCAAAGAAGGGTAGTAGAATTAACTCGTTGATTTCG
GACAGGAAAAGAGGAAAATTCCATATGCATTTTCCTACGAAGAGTAATGAAGAAAAGTTGGTTTG
TTTATCCACAACTGGAAAAGATAAATTGGGTCCATTGAAATGAAATTTGTTTTTGCTTTGATATT
CTACTTTAAACGATTCCCGTGGATGGGCTTATAGGAATGATTGTCTTTTGATGAAGCAATAAGTC
ACTTAAAAAAATAACGAGGAAATTCAAATAAAAAAGGACCAAATT
Right flanking sequence: Indices 51255 -- 51754
AATATTGAATATTATAAGGCTTTAGGGCTATACGGGCTCGAACCGTAGACCTTCTCGGTAAAACA
GATCAAACTTATTATTATCAAAATGATATGAACTGTTTCAAAGACCCAACATGCATTTTTTGTGC
ATTGGGCTCTTTCATTAACTGATAGAAATATCAGCTAGTCCGCCATTTTTATTTTTGACAGAAAA
ATAAGGAGATGGCTCCATGTGCTCTGAGTCATTATGTGGATTCAGATTCAGGAACACTACCAAAG
TTTTTCAAGGGGGGTTATCTTGACGTAGGTCTGCCTCTGGCCTAGATTAACCTAAGTGAAATGAA
GTCTCTATCGCTCTACTTAAAAATCAAATATGAAACTTCATACACCTTAAAGTTCATAGGACGAA
AAGAGATTTTTTTGAGGCCCTGATACTCAGCCTAGCATTGAATAGACTGGGTATTCACCTTATCA
ATATATCAAATCAATGATGGGGGTCTGTTTGGCACCTAATTAGCA
Found at i:51268 original size:28 final size:28
Alignment explanation
Indices: 51185--51270 Score: 163
Period size: 28 Copynumber: 3.1 Consensus size: 28
51175 CCAAATTTTT
*
51185 TATTTTTGAATATTAATATTGAATATTT
1 TATTTTTGAATATTAATATTGAATATTA
51213 TATTTTTGAATATTAATATTGAATATTA
1 TATTTTTGAATATTAATATTGAATATTA
51241 TATTTTTGAATATTAATATTGAATATTA
1 TATTTTTGAATATTAATATTGAATATTA
51269 TA
1 TA
51271 AGGCTTTAGG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (28 bp):
TATTTTTGAATATTAATATTGAATATTA
Left flanking sequence: Indices 50685 -- 51184
GGTCTAAGTAAGGTATACGAAGGAAAGCCCCTTTTACGTTGTTGCCAATGTTTACAATGAAACTT
ACATTAGCAAATTGGTTTTTAAAGCTTTATCTTGTGCACAACTACCGCACAATACCTACGTAAAT
TACTATTAGATTTGATTGGGGTTGGGTTAGTTGGAGTTTTTAACCAGACTCGTGTCATGATACAA
AATTCACTCGAATTGGATATACCAAACCAAAGAAGGGTAGTAGAATTAACTCGTTGATTTCGGAC
AGGAAAAGAGGAAAATTCCATATGCATTTTCCTACGAAGAGTAATGAAGAAAAGTTGGTTTGTTT
ATCCACAACTGGAAAAGATAAATTGGGTCCATTGAAATGAAATTTGTTTTTGCTTTGATATTCTA
CTTTAAACGATTCCCGTGGATGGGCTTATAGGAATGATTGTCTTTTGATGAAGCAATAAGTCACT
TAAAAAAATAACGAGGAAATTCAAATAAAAAAGGACCAAATTTTT
Right flanking sequence: Indices 51271 -- 51770
AGGCTTTAGGGCTATACGGGCTCGAACCGTAGACCTTCTCGGTAAAACAGATCAAACTTATTATT
ATCAAAATGATATGAACTGTTTCAAAGACCCAACATGCATTTTTTGTGCATTGGGCTCTTTCATT
AACTGATAGAAATATCAGCTAGTCCGCCATTTTTATTTTTGACAGAAAAATAAGGAGATGGCTCC
ATGTGCTCTGAGTCATTATGTGGATTCAGATTCAGGAACACTACCAAAGTTTTTCAAGGGGGGTT
ATCTTGACGTAGGTCTGCCTCTGGCCTAGATTAACCTAAGTGAAATGAAGTCTCTATCGCTCTAC
TTAAAAATCAAATATGAAACTTCATACACCTTAAAGTTCATAGGACGAAAAGAGATTTTTTTGAG
GCCCTGATACTCAGCCTAGCATTGAATAGACTGGGTATTCACCTTATCAATATATCAAATCAATG
ATGGGGGTCTGTTTGGCACCTAATTAGCACCTAAATTGACCGAAT
Found at i:51984 original size:15 final size:15
Alignment explanation
Indices: 51961--51995 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
51951 GTAGATAATT
*
51961 TATTGTCAAGATGAA
1 TATTCTCAAGATGAA
*
51976 TATTCTCAAGATGAC
1 TATTCTCAAGATGAA
51991 TATTC
1 TATTC
51996 CATGATCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (15 bp):
TATTCTCAAGATGAA
Left flanking sequence: Indices 51461 -- 51960
GCTCCATGTGCTCTGAGTCATTATGTGGATTCAGATTCAGGAACACTACCAAAGTTTTTCAAGGG
GGGTTATCTTGACGTAGGTCTGCCTCTGGCCTAGATTAACCTAAGTGAAATGAAGTCTCTATCGC
TCTACTTAAAAATCAAATATGAAACTTCATACACCTTAAAGTTCATAGGACGAAAAGAGATTTTT
TTGAGGCCCTGATACTCAGCCTAGCATTGAATAGACTGGGTATTCACCTTATCAATATATCAAAT
CAATGATGGGGGTCTGTTTGGCACCTAATTAGCACCTAAATTGACCGAATCCTTGTCAGGCTATT
TTTCTCCTCTTCCCTCAAAGTTATGGAGTAAGACATCGATTTCTCAATAAGATCAATTTTTTGAT
TGCATGATGCACTCCCCTGAAAAACATCGGCGCGCGTGTAAACGAGGTGCTCTACCAACTGAGCT
ACAGCCCTTAGTGCTTGTAATACATATTTTATTATGTAGATAATT
Right flanking sequence: Indices 51996 -- 52495
CATGATCCAAGATCATATTGATCGGTATTGCTTCTAAGTAATATGATATTTATAATCCATCGATG
GGATGAGTCCCTTTTGGTTTTCTTTGTGAAGATAAATGACCTACTTAACTCAGCGGTTAGAGTAT
CGCTTTCATACGGCGGGAGTCATTGGTTCAAATCCAATAGTAGGTAGAACTTATTAGATACCCCG
GTCAATGGTATCTAATAAGTAATTTTATTTTAGTAATATTTATTTTGTATCTTTTTTATTTATTT
TCTTTTTCGTTACATCAAAATCTGATTGCGCTTGATTGTATTTACTCGACAGAATCAAGTCAAAT
AAAACAACCAGGGTGTATAAATCGATGATTATTCGGACGCACCGACTGGTTATGAAATGGCATTG
ATAGCCTCTACTCGTGTCCTAGCCCGTCGGAGAGCTAGATTTGCCTCAATTGTTTGTCTCTTTCC
TTCAGCTTTTCTCAAAGCAGCTTCCGCTATTTCAAGAGTTTGCTG
Found at i:52227 original size:14 final size:15
Alignment explanation
Indices: 52208--52236 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
52198 GTATCTAATA
52208 AGTAAT-TTTATTTT
1 AGTAATATTTATTTT
52222 AGTAATATTTATTTT
1 AGTAATATTTATTTT
52237 GTATCTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (15 bp):
AGTAATATTTATTTT
Left flanking sequence: Indices 51708 -- 52207
CAATATATCAAATCAATGATGGGGGTCTGTTTGGCACCTAATTAGCACCTAAATTGACCGAATCC
TTGTCAGGCTATTTTTCTCCTCTTCCCTCAAAGTTATGGAGTAAGACATCGATTTCTCAATAAGA
TCAATTTTTTGATTGCATGATGCACTCCCCTGAAAAACATCGGCGCGCGTGTAAACGAGGTGCTC
TACCAACTGAGCTACAGCCCTTAGTGCTTGTAATACATATTTTATTATGTAGATAATTTATTGTC
AAGATGAATATTCTCAAGATGACTATTCCATGATCCAAGATCATATTGATCGGTATTGCTTCTAA
GTAATATGATATTTATAATCCATCGATGGGATGAGTCCCTTTTGGTTTTCTTTGTGAAGATAAAT
GACCTACTTAACTCAGCGGTTAGAGTATCGCTTTCATACGGCGGGAGTCATTGGTTCAAATCCAA
TAGTAGGTAGAACTTATTAGATACCCCGGTCAATGGTATCTAATA
Right flanking sequence: Indices 52237 -- 52736
GTATCTTTTTTATTTATTTTCTTTTTCGTTACATCAAAATCTGATTGCGCTTGATTGTATTTACT
CGACAGAATCAAGTCAAATAAAACAACCAGGGTGTATAAATCGATGATTATTCGGACGCACCGAC
TGGTTATGAAATGGCATTGATAGCCTCTACTCGTGTCCTAGCCCGTCGGAGAGCTAGATTTGCCT
CAATTGTTTGTCTCTTTCCTTCAGCTTTTCTCAAAGCAGCTTCCGCTATTTCAAGAGTTTGCTGA
GCTTCTTGTGGATCAATGTCACCACTTTTCTCTGCATCATTTACTAAAACAGTGATCTCATTATT
ACCTATTCTAGCAAAACCGCCCATCAAAGCCATCGTTAGCCATTGGTCGTTAAGGCGTATTCTCA
AAATACCTATATCTACTGCTGTGGCAATAGGAGCGTGATTTGGTAATACGCCAATTTGTCCACTA
TTAGTAGATAAAATGATTTCTTTCACTTCTGAATCCCAAACGATT
Found at i:58866 original size:20 final size:20
Alignment explanation
Indices: 58822--58859 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
58812 TATAATAAGA
58822 TATAAGATATCTTTATATAT
1 TATAAGATATCTTTATATAT
*
58842 AATAAGATATCTTTATAT
1 TATAAGATATCTTTATAT
58860 TCTATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (20 bp):
TATAAGATATCTTTATATAT
Left flanking sequence: Indices 58322 -- 58821
AAGGTTCACAAGCGGCTGAGTATTTATTCCAGAAGGGCTTATTCGATCTAATCGTACCACGTAAT
CCTTTAAAAAGCGTTCTGAGTGAGTTATTTCAACTCCACACTTTCTTTCCTTTGAATCAAAATTA
GAACATGAAGTTGAATTCTTTTGAGCAAACAAGTAATTAGTTTATCGGAATAATAGAATTTTATC
TTTCTATACCTTACGATAATCCTATTTTGACTAAGAATCCCTGCTGGATGGGATTCTAACAAACC
CTTTAATATATAAAACTAAATAAATAGAATCTAATTCATTTTTAAGAAACTTTTTGCTTAGTAAA
TTCAATTTGAAGACAAGAGAAAAAAATGAATAAAATAATATCTCATCCATATCCTTTCAAATCTT
TCATGTAGAGGGATGAAAAACTACATTATATACTCATTTAGAATAGATTAGAGAGATATTAAGTA
ATAATAATTCCAATTTAGAATTATCAAATTATACTTATAATAAGA
Right flanking sequence: Indices 58860 -- 59359
TCTATAAATATAAAATCTAAATAATAATAACAGGTACAAATAGTAAAGCGAGGTACCCATTCTAT
GACAACTCTTAACTTTCCCTCTGTTTTGGTCCCTTTAGTAGGCCTAGTATTTCCGGCAATCGCAA
TGGCTTCTTTATTTCTTCATGTTCAAAAAAACAAGATTGTTTAGAGCCGGGCACAAAATCTCATT
TTTAAACTGACGCTTGTATCATAACACAGATATCCTTTTAGCAAAATATGGTATAAGCGTCTTCC
GACGAAAATCTCCCAAAATGCTATATTCTAGCTATTTTCAAATAGACCCGAATTGGCGGACGGCT
GAATTGTAAAGTTGGTCTATCTATATGCATGTGGCTATCTTTAGTGAGATCATACGAAGGGTATG
TTATTAGTTTAGATCTAACCAATTTAATGAATTACTCCTAAAGGTTCACATCAAACTAGTGCTAG
TTGATGCGAGTTACTTCGGAAACAAAAGGACTAAAGTAAAATTCA
Found at i:62638 original size:23 final size:23
Alignment explanation
Indices: 62612--62662 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
62602 CGTTTTTTGG
62612 AGTTATTGCGTATTTTATTAATT
1 AGTTATTGCGTATTTTATTAATT
62635 AGTTATTGCGTATTTTATTAATT
1 AGTTATTGCGTATTTTATTAATT
62658 A-TTAT
1 AGTTAT
62663 ATTATAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 4 0.14
23 24 0.86
ACGTcount: A:0.27, C:0.04, G:0.12, T:0.57
Consensus pattern (23 bp):
AGTTATTGCGTATTTTATTAATT
Left flanking sequence: Indices 62112 -- 62611
GAATTTCTAGACTGGCGTATTTATCGACATCAAGTTTGTAAAAAGAACTTTTTTAGCAATTATCT
ATGATAAAAAATGAAATTATAAAAAGAATTTTGTTCTTTTAGACTCTTTTTCTACGAGATGCCGG
GAATTCCTTGTACGACATTCCTAGACATAGTATATAGAAAGACTATTTGACTTGACCCCTTCTTT
TTTTTTTCAAAATTGGGGCTATGTTGCTATTGTCAGATTGAAATGTGAAAAATGCATTTGATTCT
AATACATTTCACTTTGGCTAGATCCTATCCAAAAGTAAACGGGAAATAGAACGGATAAATATAAA
TGAAGGGAGCAAATATTTCTGGGAGGGTTTATTCGTCTTCCTAGTCTTCGACACAAGAAAAGGGG
TGTGAAAAATCCTTTTCTTGTGTCGAAATAATAATGATTCTTTATACTGTTCGTCAAACATTCCT
AGTGTTAGTTTCTGTTTTTTACAGATGTATCAGAACGTTTTTTGG
Right flanking sequence: Indices 62663 -- 63162
ATTATAAATTCTATTAGAATAATTAATAATTACGTATACTATAAAAAGTGGTGGACAAACAAAAG
AGGAGGGGAAAATTTGTTGAGTAAATAGAACTTCGTCAATGAACTTATAAAAAAATATTATAATT
ATTAAGAACTCAACGGGACCTTCTACCTTAAATCAGACAAACAAAGAAGGGAATCCGTTGAGTTC
TTACGCTTTCATGTCTACAACTCAATTCATCAGATTACTACAGGGATGAACCCAATCCGGAATAT
GAACCATAAAAGAAAACGCCTACTAAACCGATCACAAGAATACCAGCTACAGTACCTATTATCCA
AAGAGGAATTCTTCCAGTAGTATCGGCCATTTACCCCACTTCCCTCCACATTTTATCAAGTGGTC
ATACTAGAGACATAAACAGTCATGGATAATTATCAGATGAGATCCTTCCGAATGGGCTAAAAGAG
AGAATACCTAGAATGATTAGTCTATTATTTTAGTTCTCTCTCGTT
Found at i:67018 original size:21 final size:21
Alignment explanation
Indices: 66994--67034 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
66984 AAACCATGGA
66994 TAAATCCAAGCGAACTTTTCT
1 TAAATCCAAGCGAACTTTTCT
*
67015 TAAATCCAAGCGATCTTTTC
1 TAAATCCAAGCGAACTTTTC
67035 GTAGGCGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (21 bp):
TAAATCCAAGCGAACTTTTCT
Left flanking sequence: Indices 66494 -- 66993
CATAAGAGGATAGCAAGTTACAAATTCTATTTTGTTTTTTCCTTCCTTTCTTCTTTTTCGTTTCG
AATTGAAAGAGGAAGAGTTGAGTAAATGAAAAATCCAAAGGAGGTTCATGGCCAAGGGTAAAGAT
GTGCGAATACCGGTTCTTTTGGAATGTACCGCTTGTGTTCGAAACGGTGTTAATAAGGAATCAAA
GGGCATTTCCAGATATATTACTCAAAAGAACCGGCACAATACGCCTAATCGATTGGAGTTGCTAA
AATTCTGTCCATATTGTAACAAACATACGATTCACGGGGAGATAAAGAAATAGATCGAACCGAGC
ACCTGCCCCTTATCTTACAAGGAAAGGGAAAAATGACATTATATATATAACATATTTAACATAGT
TAAAGATAATTATAAACAAACCAAATCCTATTTATTTATTCTAATTAGAGATTAGAGATATGGCT
TAAATAGTATTTTAGGGATAAGAAATAAACTAACCAAACCATGGA
Right flanking sequence: Indices 67035 -- 67534
GTAGGCGTTTGCCCCCGATCCAATCGGGGGATCGAATTGATTATAAAAACATGAGTTTAATTAGT
CGATTTATTAGTGAACAGGGAAAAATATTATCTAGACGAGTGAATAGATTGACCTTGAAACAACA
ACGATTAATTACGATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATG
AGAAACAGCTTGAAAGAACCGAGCCGACCACTAGAACTCCTAGTCTTAGAGCCCGAAAAAGATAG
GTTTACACTTTCGTCACTTGAATTCAAATCCCCATCCGAACTCAAATGCGGATTGATATTTTGTT
GGAAAAATCCAAGAATCCGGATTGAATTCTCGTGTCGTAAGAAAAAAAAGAAGAATCTGGGAAGA
AGAAATTGTTTTTATTGGACGTGTTGATTCATATTTATTTTGACTACTTTATCATATTTTATCAT
ATATTAATTATATTCTATTCATTTTTATTCGACCTTCCCGGAGTT
Found at i:76693 original size:14 final size:14
Alignment explanation
Indices: 76674--76701 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76664 ATACATCTAT
76674 TCAATTAAATTATG
1 TCAATTAAATTATG
76688 TCAATTAAATTATG
1 TCAATTAAATTATG
76702 AATCTATGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
TCAATTAAATTATG
Left flanking sequence: Indices 76174 -- 76673
CATAATTATTACGGGGAGCCAGCATGGCCCAACGATCTTTTATATATTTTTCCGGTAGTAATTCT
AGGTACTATTGCATGTAACGTAGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCGGCAG
ATCCATTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCGGTATTTCAAATACTT
CGTACAGTACCCAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCCGCGGGATTATTAAC
AGTACCCTTTTTAGAGAATGTTAATAAATTCCAAAATCCTTTTCGTCGTCCAGTAGCGACAACCG
TATTTTTGATTGGTACCGCAGTGGCCCTTTGGTTGGGTATTGGTGCAACATTACCTATTGATAAA
TCCCTAACTTTAGGGCTTTTTTAAATTGATTAAATTGTGAAATAAAATATCATGACGTATGTATC
TAGGGAGCAGTCACTTCAAAGTGAATTCTCCCTAGATACATCTAT
Right flanking sequence: Indices 76702 -- 77201
AATCTATGCCGATTCCGAATATATAAATTGTCCTAAAGATTCAAAACTTATGTTTTGGCCTTTTT
CTAAAAAAAAGATGAAAAAATCCAATGGATTTAAAACTTATTTTTCGGTAAATCAATTACGAAAT
TTTTTTCTAGAATTCCTAAAATTTGTTTGACATCTTCTATGTGAAAATGCTCCATTTTCATAAGA
TCTTCTTGGCTGTTATTCAAAAGGTCCAACAGTGTATATATATTGGATCTTTTGAGGCAATTATA
GATCCTGGGAGGCAATTCTGATTGGTCAATAAAAATCGATTTCAACGCCATTTTTTTTTTATTTT
TTGTTAGTTTAGCCAATTTATCATAAAAGGTAAAAGGGGGTAAAGGAATCATGTGTTTATTGTCC
TCTAAATTAAAATTTTCTTCTTTGGTATGTAAAAAGGGAATCAATAAATCAATCAAATTCTGGGA
GGCTTCGTGAAGTGCTTCTTTAGGAGTTAAACTTCCATTTGTCCA
Found at i:80600 original size:22 final size:21
Alignment explanation
Indices: 80570--80619 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
80560 TTTAGAATTC
*
80570 AATTCAGATATA-ATATAATTT
1 AATTAAGATATACATAT-ATTT
*
80591 GAATTAAGATATACATGTATTT
1 -AATTAAGATATACATATATTT
80613 AATTAAG
1 AATTAAG
80620 TAATCTGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.28
22 15 0.60
23 3 0.12
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (21 bp):
AATTAAGATATACATATATTT
Left flanking sequence: Indices 80070 -- 80569
AAATTGAGCTCGTATAGGCATTTTGGACGCTGCTATTGAAATAGCCCTTCGGGCTATATTTTCTG
TTACTCCACCCATTTCATAAAGAATTCGACCAGGCTTAACAACAGCTACCCAATATTCGGGAGAG
CCTTTACCTGAACCCATACGTGTTTCTGCGGGTCTTACTGTAACTGGTTTATCTGGAAATATACG
AACCCATATTTTTCCACCGCGACGTGCATTTCGTGTCATTGCTCGTCGACCTGCTTCTATTTGCC
TAGATGTGATCCAAGCGGGTTCAAGTGCCTGAAGAGCGTATTTACCAAAACAAATAGTATTACCT
CGATAAGATATTCCCTTCATTCTTCCTCTATGTTGTTTACGAAATCTGGTTCTTTTGGGGTTATA
GTTGATGGTTTGTTTTGAATTCCATCTCTACTACAGAACTGGACGTGAGAGTTTCTTCTCATCCA
GCTCCTCGCGAATAAAAATAAATTCAAATTAAAGATTTAGAATTC
Right flanking sequence: Indices 80620 -- 81119
TAATCTGCTGACTCATGGATTTCATTTAATCTAGATCAAATCTATTATTAATTTTTATATCTTGT
TTGTATAGTATAGATAATAGATAACTAAATATATTAAATAACTTTTTTTTCTTATATTTATCTAA
TCTATTTTAGATTTAGAATGTTAAAAGGAATCTTTCTTTTGTTTTACTCTTTATCGTATTGGATT
CACCCTAATTTAGCAATCCAAGAAAATAAAGTTTTCGCGGGCGAATATTTACTCTTTCAATTTCT
ATTTCAGTTCTATCATTAGTTCAGAACTTTTCCGAATAGATTAATTGGTTTCTGGTCGGTTCCGC
CATCCCGATCAATGAATCGTTCGAATTCATTTTCACTAGAATCTTTTGAATTCACAGGTTCCATC
GTTCCCATCCCTTCTTACTTAATGATTAGGTCTGAATTCTACAATGGAGCTATTAGTTCTTGAGT
CAATATTCTTAGTCTTTATTGGCTCGAAGCTCTTTATTTTTTGTT
Found at i:82824 original size:3 final size:3
Alignment explanation
Indices: 82816--82852 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
82806 TATCTATATA
82816 TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT T-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
82853 AATAAATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Left flanking sequence: Indices 82316 -- 82815
CTATTACTATACATATCATAATACGACATAGTTGTATCCTTTTTTTTCCATTTTGGTTTTTGTGA
CCACTTAATAGAGTCGGTATCTATATCTCCACCTAAGGATATATCTTTCATTACAATAGTTATAT
GGCAGGTAGGTTTTTGTATGGCAAAACTACGCCCTCGAGCTCGAGGTTTTAATCTCTTCACGATA
GTACCTTCATTTACTTCGGCTTTACTAATGACTAAATTTGCTTCATTCGAACCCATATTGAAACT
AGCATTTGCTGCTGCAGAATAAACTAATTTGAAAATGGGATAACATGCTCGATAAGGCATGAGTT
CTAATATCATAAGTGTTTCTTCGTAGGAACGCCCACGAATTTGATCAATTACTCTTCGCGCTTTG
TGAGCAGACATAGATATATGTTGACCTAAAGCGTATACTTCTGTTTTCATAAAGTTCGCCTCCTA
CTAATCAATTCCTACTAATCCTAATCAATGATAAATATCTATATA
Right flanking sequence: Indices 82853 -- 83352
AATAAATATATAAACAAATTTAACGACGAGACCTATTATCGCTTTTTGCATGTCCTCGGAAATTT
AAAGTAGGTGCGAATTCTCCCAATTTGTGTCCTACCATACGATCTGTTATATAAATAGGTAAATG
TTCCTTTCCATTATGGATTGCAATAGTATGGCCAACCATTATGGGTATAATGGTAGATGCCCGGG
ACCAGGTTATTATTATTTCTTTTTCTTCTTTTGTGTTAAGCTTATTTATTTTTTTTAATAAATTA
TTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGCTTCCTCCTATTTTTTTTTTGTAAA
GACGAAGAAAGAAATTCTATTTTCTCTCCTATTTACTACGGCGACGAAGAATCAAATTATCACTA
TATTTATTCCTTTTTCTAGTTCTTTTTCCAAGTGCAGGATAACCCCAAGGGGTTGTGGGTTTTTT
TCTACCAATTGGGGCCCTTCCTTCACCACCCCCATGTGGATGGTC
Found at i:82841 original size:8 final size:8
Alignment explanation
Indices: 82819--82853 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
82809 CTATATATAT
82819 TATTATTA
1 TATTATTA
82827 TTATTATTA
1 -TATTATTA
82836 TATTATTA
1 TATTATTA
*
82844 TTTTATTA
1 TATTATTA
82852 TA
1 TA
82854 ATAAATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TATTATTA
Left flanking sequence: Indices 82319 -- 82818
TTACTATACATATCATAATACGACATAGTTGTATCCTTTTTTTTCCATTTTGGTTTTTGTGACCA
CTTAATAGAGTCGGTATCTATATCTCCACCTAAGGATATATCTTTCATTACAATAGTTATATGGC
AGGTAGGTTTTTGTATGGCAAAACTACGCCCTCGAGCTCGAGGTTTTAATCTCTTCACGATAGTA
CCTTCATTTACTTCGGCTTTACTAATGACTAAATTTGCTTCATTCGAACCCATATTGAAACTAGC
ATTTGCTGCTGCAGAATAAACTAATTTGAAAATGGGATAACATGCTCGATAAGGCATGAGTTCTA
ATATCATAAGTGTTTCTTCGTAGGAACGCCCACGAATTTGATCAATTACTCTTCGCGCTTTGTGA
GCAGACATAGATATATGTTGACCTAAAGCGTATACTTCTGTTTTCATAAAGTTCGCCTCCTACTA
ATCAATTCCTACTAATCCTAATCAATGATAAATATCTATATATAT
Right flanking sequence: Indices 82854 -- 83353
ATAAATATATAAACAAATTTAACGACGAGACCTATTATCGCTTTTTGCATGTCCTCGGAAATTTA
AAGTAGGTGCGAATTCTCCCAATTTGTGTCCTACCATACGATCTGTTATATAAATAGGTAAATGT
TCCTTTCCATTATGGATTGCAATAGTATGGCCAACCATTATGGGTATAATGGTAGATGCCCGGGA
CCAGGTTATTATTATTTCTTTTTCTTCTTTTGTGTTAAGCTTATTTATTTTTTTTAATAAATTAT
TCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGCTTCCTCCTATTTTTTTTTTGTAAAG
ACGAAGAAAGAAATTCTATTTTCTCTCCTATTTACTACGGCGACGAAGAATCAAATTATCACTAT
ATTTATTCCTTTTTCTAGTTCTTTTTCCAAGTGCAGGATAACCCCAAGGGGTTGTGGGTTTTTTT
CTACCAATTGGGGCCCTTCCTTCACCACCCCCATGTGGATGGTCT
Found at i:82841 original size:11 final size:11
Alignment explanation
Indices: 82810--82852 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
82800 GATAAATATC
82810 TATATATATTAT
1 TATAT-TATTAT
82822 TATTATTATTAT
1 TA-TATTATTAT
82834 TATATTATTAT
1 TATATTATTAT
*
82845 TTTATTAT
1 TATATTAT
82853 AATAAATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 16 0.55
12 10 0.34
13 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATATTATTAT
Left flanking sequence: Indices 82310 -- 82809
CCATTACTATTACTATACATATCATAATACGACATAGTTGTATCCTTTTTTTTCCATTTTGGTTT
TTGTGACCACTTAATAGAGTCGGTATCTATATCTCCACCTAAGGATATATCTTTCATTACAATAG
TTATATGGCAGGTAGGTTTTTGTATGGCAAAACTACGCCCTCGAGCTCGAGGTTTTAATCTCTTC
ACGATAGTACCTTCATTTACTTCGGCTTTACTAATGACTAAATTTGCTTCATTCGAACCCATATT
GAAACTAGCATTTGCTGCTGCAGAATAAACTAATTTGAAAATGGGATAACATGCTCGATAAGGCA
TGAGTTCTAATATCATAAGTGTTTCTTCGTAGGAACGCCCACGAATTTGATCAATTACTCTTCGC
GCTTTGTGAGCAGACATAGATATATGTTGACCTAAAGCGTATACTTCTGTTTTCATAAAGTTCGC
CTCCTACTAATCAATTCCTACTAATCCTAATCAATGATAAATATC
Right flanking sequence: Indices 82853 -- 83352
AATAAATATATAAACAAATTTAACGACGAGACCTATTATCGCTTTTTGCATGTCCTCGGAAATTT
AAAGTAGGTGCGAATTCTCCCAATTTGTGTCCTACCATACGATCTGTTATATAAATAGGTAAATG
TTCCTTTCCATTATGGATTGCAATAGTATGGCCAACCATTATGGGTATAATGGTAGATGCCCGGG
ACCAGGTTATTATTATTTCTTTTTCTTCTTTTGTGTTAAGCTTATTTATTTTTTTTAATAAATTA
TTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGCTTCCTCCTATTTTTTTTTTGTAAA
GACGAAGAAAGAAATTCTATTTTCTCTCCTATTTACTACGGCGACGAAGAATCAAATTATCACTA
TATTTATTCCTTTTTCTAGTTCTTTTTCCAAGTGCAGGATAACCCCAAGGGGTTGTGGGTTTTTT
TCTACCAATTGGGGCCCTTCCTTCACCACCCCCATGTGGATGGTC
Found at i:90329 original size:15 final size:17
Alignment explanation
Indices: 90309--90383 Score: 73
Period size: 18 Copynumber: 4.4 Consensus size: 17
90299 TCTCAAGGTT
90309 TTGATGATA-T-CGATA
1 TTGATGATATTACGATA
90324 TTGATGATATTGACGATA
1 TTGATGATATT-ACGATA
* *
90342 TTGATGCTAGTGACGATA
1 TTGATGATA-TTACGATA
* *
90360 TTGATGCTAGTGACGATA
1 TTGATGATA-TTACGATA
90378 TTGATG
1 TTGATG
90384 CTAGTGACGA
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
15 9 0.17
16 1 0.02
18 43 0.80
19 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.37
Consensus pattern (17 bp):
TTGATGATATTACGATA
Left flanking sequence: Indices 89809 -- 90308
CTGGGTTGCAAACAGTGATTCAATTGATGATGAAAAAAGAGAATTCTTGGTTCAGTTCTCCACCT
TAACGACAGAAAAAAGGATTGATCAAATTTTATTGAGTCTGACTCATAGTGATCATTTATCAAAG
AATGACTCTGGTTATCAAATGATTGAACAACCGGGAGCAATTTACTTACGATACTTAGTTGACAT
TCATAAAAAGTATCTAATGAATTATGAGTTCAATACATCCTCTTTAGCAGAAAGACGGATATTCC
TTGCTCATTATCAGACAATCACTTATTCACAAACTGCGTGTGGGGCTAATAGTTTTCATTTCCCA
TCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCTCTCTAGGGGTATTTTAGTGATAGG
TTCTATAGGAACTGGACGCTCTTATTTGGTCAAATACCTAGCGAAAAACTCCTATCTTCCTTTCA
TTACGGTATTTCTGAACAAGTTCCTGGATAACAAGTCTCAAGGTT
Right flanking sequence: Indices 90384 -- 90883
CTAGTGACGATATCCTTGATATGGAGCTGGAACTGCTAACTAGCATGAATGCGCTAACTATGGAT
ATGATGCCTGAAGATGAAGACCAACTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTC
TCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCAAATTACTTCTCCC
TAGGTCTATTAGTGAACCTTCTCTCCAGGGATTATGAAACTAGAAATATTCTTGTTATTGCTTCG
ACTCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACGTGCATTAA
GATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGAT
TTCACTTGGAAAATAAAATGTTCCATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATGCA
CGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATT
Found at i:90334 original size:9 final size:9
Alignment explanation
Indices: 90320--90383 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
90310 TGATGATATC
90320 GATATTGAT
1 GATATTGAT
*
90329 GATATTGAC
1 GATATTGAT
90338 GATATTGAT
1 GATATTGAT
* * *
90347 GCTAGTGAC
1 GATATTGAT
90356 GATATTGAT
1 GATATTGAT
* * *
90365 GCTAGTGAC
1 GATATTGAT
90374 GATATTGAT
1 GATATTGAT
90383 G
1 G
90384 CTAGTGACGA
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.36
Consensus pattern (9 bp):
GATATTGAT
Left flanking sequence: Indices 89820 -- 90319
ACAGTGATTCAATTGATGATGAAAAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAA
AAAAGGATTGATCAAATTTTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGG
TTATCAAATGATTGAACAACCGGGAGCAATTTACTTACGATACTTAGTTGACATTCATAAAAAGT
ATCTAATGAATTATGAGTTCAATACATCCTCTTTAGCAGAAAGACGGATATTCCTTGCTCATTAT
CAGACAATCACTTATTCACAAACTGCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAAA
ACCCTTTTCGCTCCGCTTAGCCTTATCCCTCTCTAGGGGTATTTTAGTGATAGGTTCTATAGGAA
CTGGACGCTCTTATTTGGTCAAATACCTAGCGAAAAACTCCTATCTTCCTTTCATTACGGTATTT
CTGAACAAGTTCCTGGATAACAAGTCTCAAGGTTTTGATGATATC
Right flanking sequence: Indices 90384 -- 90883
CTAGTGACGATATCCTTGATATGGAGCTGGAACTGCTAACTAGCATGAATGCGCTAACTATGGAT
ATGATGCCTGAAGATGAAGACCAACTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTC
TCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCAAATTACTTCTCCC
TAGGTCTATTAGTGAACCTTCTCTCCAGGGATTATGAAACTAGAAATATTCTTGTTATTGCTTCG
ACTCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACGTGCATTAA
GATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGAT
TTCACTTGGAAAATAAAATGTTCCATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATGCA
CGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATT
Found at i:90340 original size:18 final size:18
Alignment explanation
Indices: 90319--90396 Score: 138
Period size: 18 Copynumber: 4.3 Consensus size: 18
90309 TTGATGATAT
* *
90319 CGATATTGATGATATTGA
1 CGATATTGATGCTAGTGA
90337 CGATATTGATGCTAGTGA
1 CGATATTGATGCTAGTGA
90355 CGATATTGATGCTAGTGA
1 CGATATTGATGCTAGTGA
90373 CGATATTGATGCTAGTGA
1 CGATATTGATGCTAGTGA
90391 CGATAT
1 CGATAT
90397 CCTTGATATG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (18 bp):
CGATATTGATGCTAGTGA
Left flanking sequence: Indices 89819 -- 90318
AACAGTGATTCAATTGATGATGAAAAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGA
AAAAAGGATTGATCAAATTTTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTG
GTTATCAAATGATTGAACAACCGGGAGCAATTTACTTACGATACTTAGTTGACATTCATAAAAAG
TATCTAATGAATTATGAGTTCAATACATCCTCTTTAGCAGAAAGACGGATATTCCTTGCTCATTA
TCAGACAATCACTTATTCACAAACTGCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAA
AACCCTTTTCGCTCCGCTTAGCCTTATCCCTCTCTAGGGGTATTTTAGTGATAGGTTCTATAGGA
ACTGGACGCTCTTATTTGGTCAAATACCTAGCGAAAAACTCCTATCTTCCTTTCATTACGGTATT
TCTGAACAAGTTCCTGGATAACAAGTCTCAAGGTTTTGATGATAT
Right flanking sequence: Indices 90397 -- 90896
CCTTGATATGGAGCTGGAACTGCTAACTAGCATGAATGCGCTAACTATGGATATGATGCCTGAAG
ATGAAGACCAACTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATA
TGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCAAATTACTTCTCCCTAGGTCTATTAGT
GAACCTTCTCTCCAGGGATTATGAAACTAGAAATATTCTTGTTATTGCTTCGACTCATATTCCCC
AAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACGTGCATTAAGATACGAAGGCTT
CTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAA
TAAAATGTTCCATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATGCACGAGATCTTGTAG
CACTTACCAATGAGGCCCTATCGATTAGTATTACACAGAAGAAAT
Found at i:97990 original size:10 final size:10
Alignment explanation
Indices: 97975--97999 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
97965 ATTATATTAG
97975 TATTAATTCA
1 TATTAATTCA
97985 TATTAATTCA
1 TATTAATTCA
97995 TATTA
1 TATTA
98000 GATTAGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
TATTAATTCA
Left flanking sequence: Indices 97475 -- 97974
AATATTTTTCCCTCTCTTTTTTTTATATTATTCCTTAAGTCCCATAGGGTTGATCCTTTAGAATT
GGACTCATTTTCTCATTGAGCGAAGGGTACGAAATAAATCAGATTGATTAAAAGCACTATGTGAA
ATATTCGGTTTTTTCCTCTTCCTCTATCCCATAGGTACAGTGTTTGAATCAATCGAGAACCTTTT
CTTCTGTCTGAATCGATATTATTCCATTCCAATTCCTTCCCGATACCTCTCAAGGAAAATATCGA
ATTGGATCCTAAATTGACGGGTTAGTGTGAGCTTATCCATGCAGTTATGCACTCTTCGAATAGGA
ATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCT
ATGTTGTGTTGAAGGGATATCTATATAATCCGATCGATTGCGTAAAGCCCGCGGTAGCAGCGGAA
CCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTATTATATTAG
Right flanking sequence: Indices 98000 -- 98499
GATTAGTCTTAGTTAGTGATCCCGGCTTAGTGAGTCCTTTCTTCCATGATGAACTGTTGGCGCCA
GTCCTACATTTTGTCTCTGTGGACCCAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTGTACCGTG
AGAGAAGCAAGGGGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTG
GACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGCAAAGATTTGCCTGTTAGGTAAG
AGGATAGCAAGTTACAAATTCTGTCTCGGTAGGACATGTATCTCTATTACTATGAATTTCATAAA
TGAAGTAGTTAATGGTGGGGTTACCATTATCCTTTTTGTAGTGACGAATCCTGTATGCGTTCCTA
AGAAAAGGAATTTGTCCATTTTTCGGGGTCTCAAAGGAGCGTGGAAACACATAAGAACTCTTGAA
TGGAAATGGAAAAGAGATGGAACTCCAGTTCCTTCGGAAATGGTA
Found at i:106027 original size:32 final size:32
Alignment explanation
Indices: 105986--106047 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
105976 CATCTATTTT
105986 CATTGTTCAACTCTTTAACAACATGAAAAAAC
1 CATTGTTCAACTCTTTAACAACATGAAAAAAC
*
106018 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTAACAACATGAAAAA
106048 CCAAAAGCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTAACAACATGAAAAAAC
Left flanking sequence: Indices 105486 -- 105985
GTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGT
CCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGG
ACGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGA
TAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCC
CCAGAGCCTCCGGTAGCACAGCCGAGACAGCGACGGGTTCTCTGCCCCTGCGGGGATGGAGCGAC
AGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGACGAGCCGTTTATCATTACGATAGGTGTC
AAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTT
CCTACATGACCCGATCAATTCGATCGGGCACTCGCCATCTATTTT
Right flanking sequence: Indices 106048 -- 106547
CCAAAAGCTCTGCCCTCCCTCTCTATCTATCCAAGGGATGGAAGGGCAGAGTCCTTTGGTGTCCC
CCCCAGTCAAGAATTGGGGCCTCGCAATCACTATTTTCTCTCATGCCTTTCTTCGTTCATGGTTC
GATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTC
TACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAA
AACTTCACACCTCCCGTTCTTCATACTTTTTCAATATGAAAAAAAAAAATGCAAAAAAAAGGTCG
TCTTATTCAAAACCCCAATTATGACATCCCTTCTCTCCCACTTCACACCTCGGAACGCGCCGTTC
TTATAGAGATAAAGGCGCTTTGACATCTTCTTAACCCGAAATGGCTGGGGAGAGCAAAGGTTCCT
TTTTTGAGGGTACTCCCGGGAACAGATCCAGTGGAGACGGAGTGG
Found at i:111628 original size:17 final size:17
Alignment explanation
Indices: 111606--111638 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
111596 TCAGTAATTT
111606 GTTAAT-TTAATATTAAA
1 GTTAATATTAA-ATTAAA
111623 GTTAATATTAAATTAA
1 GTTAATATTAAATTAA
111639 CAATTGGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (17 bp):
GTTAATATTAAATTAAA
Left flanking sequence: Indices 111106 -- 111605
AGCAGATGAGATATAAACAACGAGAACTAAGAGTTCCAAACCAAAAATTTTTGGTTTTACAAATA
GTGTATGGAATCAAAATTTTGTTATTTCGAGTCATTTTTGATAAAATTTTCACGGATCTTTGACG
TATCTAGATTTCTATGAAGAGAATCTTTTAGAAAAAAAAAAATAGATAATGAAATAAGATAAGAA
ATAATAATTCGTTTTGAACAATAGATGTCTTTCACATCCAACTATAACAATGACTAACTTCTTCT
TTTTTAAATGGCAGTTCCAAAAAAACGTACTTCGATATCAAAAAAGCGTATTCGTAAAAATATTT
GGAAAAGGAAAGGATATTGGGCGGCATTAAAAGCTTTGTCATTAGGGAAATCTCTTTCTACCGGG
AATTCCAAAAGTTTTTTTGTACGACAAACAAATAAGTCCTAAAATATTGGAATAATTTGGAATGG
ATTTGACTAAAAAAATTGGATCAGTAATTAATATCTCAGTAATTT
Right flanking sequence: Indices 111639 -- 112138
CAATTGGCAGTTCCTATTCTAATCAATATGAAATAGACTCTTAATCTTATAAAAAGAAGAAGTAT
TCTTCTTTATAAATTCTAAAAATAAAAAAGAATAATAAAATAAATATATATTTTTTATTTTATTT
TTTTAGTATATTTTCATTCAGATTTTGGTGGTGGGGAGTCTTCTTTTCCCCATCGACCTTTACAA
GAATAAATAATGAAAAAATTTTATATTTATCAGGAAGGGCAGATAGCATATTTTTAGTTCAAATT
AATTAATTGTTCAAACTAATCCATTCCGTGTTAAAGATTTTTGGATCACTTTCTGACTTCTTAAT
TTATTATATATACTATATTTAATGTATTTTACATATATATCCAATTTTCAGCCCAATCAATAATC
AATAAAAGAACTTAATTGTTGAGATATTATTTTAGATACAAGTGGCAATTTGGAGTAATCCAAAA
TAGACATATTTTAGATTCATTGATAAAATTGAGTTTGTGTTTCAA
Found at i:125805 original size:45 final size:45
Alignment explanation
Indices: 125743--125831 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
125733 ATCATAGATT
* * ** *
125743 TTAATTAGGCAATTCTTTTTGTTTTTTTTCTCAACATTATACAAA
1 TTAACTAGGAAATTCTTTTTGTTTTTAGTCTCAACATTACACAAA
*
125788 TTAACTAGGAAATTCTTTTTGTTTTTAGTCTCAGCATTACACAA
1 TTAACTAGGAAATTCTTTTTGTTTTTAGTCTCAACATTACACAA
125832 TCTAGTCTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (45 bp):
TTAACTAGGAAATTCTTTTTGTTTTTAGTCTCAACATTACACAAA
Left flanking sequence: Indices 125243 -- 125742
TAAATTTTGTATAAAGATTATAATTCTTGAAATTAGATTTCTTAAAACTTCGTTTGGAACGAGTT
AAAAAAGCTATACGTTTAAATCTTCTTGTTCGAAGCTGGTGATCCAGCCCTTGCATTATGCCTTG
TTCTTTTCGTCGTTTTTTAAACATTTGTTCCAACTCGTTGATTAATTTGTATGACCATCGAGGTG
GTTTTTTACCTATTTCATTTATGTTTATTCCAATAGATTTTTTTTCGCGCTTAGGATTAGTTAGA
ATTGCGTTCAATGAAAACTTTAACCTATTATTGGAATCAATTTTTACTTGTTTTTTTTCTGATAT
TTCTATTTTCTGTTCAGATTCTGGAAAAGTAGGATAAGGAAGAAGGATATCGTGAATTTTATTTA
TTTCAGAAGGTTCTGTGCAATTTTCTATCGAGGTTTCTTTTCTGATTGAAGATGAAAAAATTTTC
TTCATTCTTCCACGATACATCCCATTTAAAAAGGGATCATAGATT
Right flanking sequence: Indices 125832 -- 126331
TCTAGTCTTTGTTTCAAGTATATTTAGAGAAAGAAATACTGTCTCTAAAGCCTCGATTCTATTTA
TAAATTCATTATTTAAGTTCTTATTTTTCTCTTTATTGGTATAAAGCCACTCGCTATATAGTTCA
TCAGCGGACAGTTTTTCTAATGTAGATAAGGATATCCTTTTTGCTATCATTTCCCCAAAAGTTGA
CAAACTCGGAGGATATGTAAAAGATATTCTTTGTTTTCCATCACTTTGGCATGTATAAAAAAAAT
ATTGTGAGGCTTCTTTTCTTACGGAGCCTTTAAATTTTTTATTTCTCTTTCTGATGTATCGTAAT
GGACGATTCCATCGGTTATAATCGAAAAAAAAAGTCAAAAGAGGTTTTTCAAACAAAAAAAAGTA
TTTTTCTTCATCTTTTTTATTTTTTTCAAGTATTTTAAACTTCCAATTTTCCTGATCCCCTATAT
AATCAATCGGGCTATTATTATCAAATTCTTCTTCTTCTTCTTCCA
Found at i:128570 original size:32 final size:32
Alignment explanation
Indices: 128531--128592 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
128521 GAGCTTTTGG
128531 TTTTTCATGTTGTCAAAGAGTTGAACAATGGT
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGT
*
128563 TTTTTCATGTTGTTAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
128593 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGT
Left flanking sequence: Indices 128031 -- 128530
CCACTCCGTCTCCACTGGATCTGTTCCCGGGAGTACCCTCAAAAAAGGAACCTTTGCTCTCCCCA
GCCATTTCGGGTTAAGAAGATGTCAAAGCGCCTTTATCTCTATAAGAACGGCGCGTTCCGAGGTG
TGAAGTGGGAGAGAAGGGATGTCATAATTGGGGTTTTGAATAAGACGACCTTTTTTTTGCATTTT
TTTTTTTCATATTGAAAAAGTATGAAGAACGGGAGGTGTGAAGTTTTTTATCATCCTGGCGTCGA
GCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCG
GGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGG
CATGAGAGAAAATAGTGATTGCGAGGCCCCAATTCTTGACTGGGGGGGACACCAAAGGACTCTGC
CCTTCCATCCCTTGGATAGATAGAGAGGGAGGGCAGAGCTTTTGG
Right flanking sequence: Indices 128593 -- 129092
AAAATAGATGGCGAGTGCCCGATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCG
GTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAA
ACGGCTCGTCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGG
GCAGAGAACCCGTCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGC
ACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTAC
CCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTAC
TAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGT
TCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAAC
Found at i:136592 original size:10 final size:10
Alignment explanation
Indices: 136579--136603 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
136569 AAGACTAATC
136579 TAATATGAAT
1 TAATATGAAT
136589 TAATATGAAT
1 TAATATGAAT
136599 TAATA
1 TAATA
136604 CTAATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (10 bp):
TAATATGAAT
Left flanking sequence: Indices 136079 -- 136578
TACCATTTCCGAAGGAACTGGAGTTCCATCTCTTTTCCATTTCCATTCAAGAGTTCTTATGTGTT
TCCACGCTCCTTTGAGACCCCGAAAAATGGACAAATTCCTTTTCTTAGGAACGCATACAGGATTC
GTCACTACAAAAAGGATAATGGTAACCCCACCATTAACTACTTCATTTATGAAATTCATAGTAAT
AGAGATACATGTCCTACCGAGACAGAATTTGTAACTTGCTATCCTCTTACCTAACAGGCAAATCT
TTGCCTCCGTGGAAAGGATGATTCATTCGGATCGACATGAGAGTCCAACTACATTGCATTGCCAG
AATCCATGTTGTATATTTGAAAGAGGTTGACCCCCTTGCTTCTCTCACGGTACAATCCTCTTCCC
GCCGAGCCCCCTTTCTCCTGGGTCCACAGAGACAAAATGTAGGACTGGCGCCAACAGTTCATCAT
GGAAGAAAGGACTCACTAAGCCGGGATCACTAACTAAGACTAATC
Right flanking sequence: Indices 136604 -- 137103
CTAATATAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGCTGCTACCGCGGGCT
TTACGCAATCGATCGGATTATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCG
GAGACCCACCAAAGCACGAAAGCCAGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATA
ACTGCATGGATAAGCTCACACTAACCCGTCAATTTAGGATCCAATTCGATATTTTCCTTGAGAGG
TATCGGGAAGGAATTGGAATGGAATAATATCGATTCAGACAGAAGAAAAGGTTCTCGATTGATTC
AAACACTGTACCTATGGGATAGAGGAAGAGGAAAAAACCGAATATTTCACATAGTGCTTTTAATC
AATCTGATTTATTTCGTACCCTTCGCTCAATGAGAAAATGAGTCCAATTCTAAAGGATCAACCCT
ATGGGACTTAAGGAATAATATAAAAAAAAGAGAGGGAAAAATATT
Found at i:144205 original size:18 final size:18
Alignment explanation
Indices: 144182--144259 Score: 138
Period size: 18 Copynumber: 4.3 Consensus size: 18
144172 CATATCAAGG
144182 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
144200 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
144218 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
* *
144236 ATATCGTCAATATCATCA
1 ATATCGTCACTAGCATCA
144254 ATATCG
1 ATATCG
144260 ATATCATCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATATCGTCACTAGCATCA
Left flanking sequence: Indices 143682 -- 144181
ATTTCTTCTGTGTAATACTAATCGATAGGGCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTG
GAACCCATGGTTATGGACCCGAATCCATTAGTATGGAACATTTTATTTTCCAAGTGAAATCCCCT
AGTATATGAAAGAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGC
ACGTATTTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCA
ATAACAAGAATATTTCTAGTTTCATAATCCCTGGAGAGAAGGTTCACTAATAGACCTAGGGAGAA
GTAATTTGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTG
CTTTTGCTAATTCGAATTGAAGGGTGATATAAAGTTGGTCTTCATCTTCAGGCATCATATCCATA
GTTAGCGCATTCATGCTAGTTAGCAGTTCCAGCTCCATATCAAGG
Right flanking sequence: Indices 144260 -- 144759
ATATCATCAAAACCTTGAGACTTGTTATCCAGGAACTTGTTCAGAAATACCGTAATGAAAGGAAG
ATAGGAGTTTTTCGCTAGGTATTTGACCAAATAAGAGCGTCCAGTTCCTATAGAACCTATCACTA
AAATACCCCTAGAGAGGGATAAGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGA
AAACTATTAGCCCCACACGCAGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCG
TCTTTCTGCTAAAGAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTA
AGTATCGTAAGTAAATTGCTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAA
TGATCACTATGAGTCAGACTCAATAAAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAA
CTGAACCAAGAATTCTCTTTTTTCATCATCAATTGAATCACTGTT
Found at i:144247 original size:9 final size:9
Alignment explanation
Indices: 144182--144259 Score: 66
Period size: 9 Copynumber: 8.7 Consensus size: 9
144172 CATATCAAGG
144182 ATATCGTCA
1 ATATCGTCA
* * *
144191 CTAGCATCA
1 ATATCGTCA
144200 ATATCGTCA
1 ATATCGTCA
* * *
144209 CTAGCATCA
1 ATATCGTCA
144218 ATATCGTCA
1 ATATCGTCA
* * *
144227 CTAGCATCA
1 ATATCGTCA
144236 ATATCGTCA
1 ATATCGTCA
*
144245 ATATCATCA
1 ATATCGTCA
144254 ATATCG
1 ATATCG
144260 ATATCATCAA
Statistics
Matches: 49, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (9 bp):
ATATCGTCA
Left flanking sequence: Indices 143682 -- 144181
ATTTCTTCTGTGTAATACTAATCGATAGGGCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTG
GAACCCATGGTTATGGACCCGAATCCATTAGTATGGAACATTTTATTTTCCAAGTGAAATCCCCT
AGTATATGAAAGAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGC
ACGTATTTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCA
ATAACAAGAATATTTCTAGTTTCATAATCCCTGGAGAGAAGGTTCACTAATAGACCTAGGGAGAA
GTAATTTGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTG
CTTTTGCTAATTCGAATTGAAGGGTGATATAAAGTTGGTCTTCATCTTCAGGCATCATATCCATA
GTTAGCGCATTCATGCTAGTTAGCAGTTCCAGCTCCATATCAAGG
Right flanking sequence: Indices 144260 -- 144759
ATATCATCAAAACCTTGAGACTTGTTATCCAGGAACTTGTTCAGAAATACCGTAATGAAAGGAAG
ATAGGAGTTTTTCGCTAGGTATTTGACCAAATAAGAGCGTCCAGTTCCTATAGAACCTATCACTA
AAATACCCCTAGAGAGGGATAAGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGA
AAACTATTAGCCCCACACGCAGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCG
TCTTTCTGCTAAAGAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTA
AGTATCGTAAGTAAATTGCTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAA
TGATCACTATGAGTCAGACTCAATAAAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAA
CTGAACCAAGAATTCTCTTTTTTCATCATCAATTGAATCACTGTT
Found at i:144263 original size:15 final size:16
Alignment explanation
Indices: 144231--144269 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
144221 TCGTCACTAG
144231 CATCAATATCGTCAATAT
1 CATCAATATCG--AATAT
144249 CATCAATATCG-ATAT
1 CATCAATATCGAATAT
144264 CATCAA
1 CATCAA
144270 AACCTTGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.48
18 11 0.52
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (16 bp):
CATCAATATCGAATAT
Left flanking sequence: Indices 143731 -- 144230
AAGATCTCGTGCATTGGAACCCATGGTTATGGACCCGAATCCATTAGTATGGAACATTTTATTTT
CCAAGTGAAATCCCCTAGTATATGAAAGAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGC
CTTCGTATCTTAATGCACGTATTTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGG
AATATGAGTCGAAGCAATAACAAGAATATTTCTAGTTTCATAATCCCTGGAGAGAAGGTTCACTA
ATAGACCTAGGGAGAAGTAATTTGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATT
ATGCAAGGAGACATTGCTTTTGCTAATTCGAATTGAAGGGTGATATAAAGTTGGTCTTCATCTTC
AGGCATCATATCCATAGTTAGCGCATTCATGCTAGTTAGCAGTTCCAGCTCCATATCAAGGATAT
CGTCACTAGCATCAATATCGTCACTAGCATCAATATCGTCACTAG
Right flanking sequence: Indices 144270 -- 144769
AACCTTGAGACTTGTTATCCAGGAACTTGTTCAGAAATACCGTAATGAAAGGAAGATAGGAGTTT
TTCGCTAGGTATTTGACCAAATAAGAGCGTCCAGTTCCTATAGAACCTATCACTAAAATACCCCT
AGAGAGGGATAAGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGAAAACTATTAG
CCCCACACGCAGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCGTCTTTCTGCT
AAAGAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTAAGTATCGTAA
GTAAATTGCTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGATCACTAT
GAGTCAGACTCAATAAAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAACTGAACCAAG
AATTCTCTTTTTTCATCATCAATTGAATCACTGTTTGCAACCCAG
Done.