Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_071216
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1174803
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
File 3 of 4
Found at i:682761 original size:13 final size:13
Alignment explanation
Indices: 682743--682768 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
682733 CCCTGGAGGG
682743 AACCATAGCCCTC
1 AACCATAGCCCTC
682756 AACCATAGCCCTC
1 AACCATAGCCCTC
682769 TGCCCTATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.46, G:0.08, T:0.15
Consensus pattern (13 bp):
AACCATAGCCCTC
Left flanking sequence: Indices 682243 -- 682742
CTGTCCGGGGAACTTACAGATACTTATTTATTTCTTTATTGGGTCAGTTTCGATCCGTCCGTCCG
CCCGTTGGACCTTCGAGATAGGTGGTCCTACGGACGGTACGGGTGGTACGGGACAGGTGACTGAG
GTGAGTCAGTGAGTGAGGGTCATTCCCGGTAGCCCCAGTCAGCCTCAGCATTGCCAGAATGAAAG
TAACATAATTAATAGCTGATCATTGCCGTCGTAGATCATTCCGGTCATAGGAATAGGAGATCATA
GCCAGCAGTCTGAGCCATATTCCCCCATGCTTGCCTTGGGTGGAGAGATATTGATTGATATTGGA
TTGCCAACAGAGAGAGATAGACCGGTTGAAGGAAAATAAACTAAACAAAGAAACGGAGGAGGGCA
GCTCGAACTCTACCTCTTTATACCTCTAGCTACCAATATGATATACCTCTAAACTATCTGCGCTC
TAACCTAGACCCTCGAACCTCGAACTCGAAATATACCCTGGAGGG
Right flanking sequence: Indices 682769 -- 683268
TGCCCTATAACCTCGAGCTCACTTACGAATATGGGACACAAGTTTCCACATACTTTAGTAACCTT
CAACACATACACGAAAGATATAAGGAAGGACCCCCTTCAATGGAGAGGAAAAGAACTTTCACATA
CCCCCGGAAAGGGGCTAAGACCTCTATTGCTAAACAAATGGTAAAATAAGCCCTTGCTTTTATTC
TAATAATTAGTCCCCATAATAAACACTATTTAGCCCACATCTTTTCAAGCTATTGAACCCGCCTC
CTTCCTGATTTATTCGTCGCCTTTGCTCCGATGTCGGAGATGCTTTGCGGCGTTGCGGCGACGTC
ATTTTGGGTGCCTCAATGGGGTATAGGCTCCATTTGTTTGTTACACCCCTAACACCTTGTTTCCT
TGGAACCCATTGAATTCACCTTTTGCCAAGCCCACCGAGGGGGTAGGGGGTAGTTACAGTTATTG
GGAGATAAAAGGTCCTAGGGTAATAAAAACAATGATCCACTTCCT
Found at i:684512 original size:45 final size:44
Alignment explanation
Indices: 684444--684536 Score: 132
Period size: 45 Copynumber: 2.1 Consensus size: 44
684434 AGGATTATTA
* *
684444 TATTTATTACTATACACTTATTGGTAAATGTAACATACAAGGAG
1 TATTTATTACTATACACTCATTGGTAAATGCAACATACAAGGAG
* **
684488 TATTTATTTCTAATACACTCATTGGTAAATGCGGCATACAAGGAG
1 TATTTATTACT-ATACACTCATTGGTAAATGCAACATACAAGGAG
684533 TATT
1 TATT
684537 ATAGCTAGGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 10 0.23
45 33 0.77
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (44 bp):
TATTTATTACTATACACTCATTGGTAAATGCAACATACAAGGAG
Left flanking sequence: Indices 683944 -- 684443
TTATCCCCGGCCGGGGGAATCATCTCTTCGAAGCCCCCGTAGTGGGTTAGCTTTTGGCTGTGAGA
AACATATATAACGAAAGACCCGCCTATACCAGTTCGTATCAGGGCCTTTGAGTTTTCCCAGATTG
TTTGGGAACGTTTAACCTTAATAATAAGCTGACCTGTAGCTACGGCCGTCCCTGAACTCTTGCGG
CATTGCCAATGGGCATGAGCACTATGGGCAATCCCTATATGGATACCGGATATTTATGCCTACAA
AATGACCAGGAAATAGACTGATCGAGACAAGGTTACTCACAAACACACTAGGATATACCAGCAGC
AGCCTCCGCACCAGTAGCAAAAGCAGTAGTTGGAGAAAAGAGAAATAATCATCCAATGTGAGAGA
GAGAAGGAAGAAGGGCCATCGAGAGAAGGTCAAGGATAAAGTCAAGCCCGGTTAAAGGAAGAGAT
CATTGTAACGTGAGCCTGAACGTTGTATTGGTTAAAGGATTATTA
Right flanking sequence: Indices 684537 -- 685036
ATAGCTAGGACTATACACTAATCGGGCTGCATGATCTGTCTGATTGTATCATATTGAAAAAGAAC
TAGAAGAAGACAAGTCTATGTCTATCAATATCTATGGAGATTACTTAACCACTTAAAGTGTTTTC
ACTGTTGCCTTTGAACCCGAAAGACGGAAAGGAATCGCAGTTAACCCGGCTTTAGGTTGTTCTGC
TTCAATAAATACGCAGGAGGAAGCTAACTCCTAAGGGGAGACCAGTCTCATTAGACTTCTGGTCA
GGGCCAGTAATTAGGCAAGCTCTTAGGCAAGCCACCTACCATTGGCAGGCTAGGCAAGAACGACA
GCGGCTAGTATTTAACGACTTACAAGCTTGGCAGGTGAGATTGCTTGTAGGTAGGCTTATTCCCA
GTCTGAATCAGTCTCATTCCCATCAAAAAGTAGCAGCACGAGGTAAGGATGCTTTCCAGTATCAC
GAGGTACACAGCTTATCAGCCCGATTACAAGCTTGACCGGCTAGG
Found at i:686548 original size:16 final size:16
Alignment explanation
Indices: 686527--686557 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
686517 AATCTTTCTA
686527 TGCTAATGGCTAAGCT
1 TGCTAATGGCTAAGCT
*
686543 TGCTAATTGCTAAGC
1 TGCTAATGGCTAAGC
686558 CATTCCTTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (16 bp):
TGCTAATGGCTAAGCT
Left flanking sequence: Indices 686027 -- 686526
CGCTCCGCTGGCCTCACACGCCGGCTGTGCTCGGCGGCCTTCGAGCCACCCTACGGGTTGGCTCT
CCGGCTATATAGATTTCTATTTTATTCATTTTCTCTCCTATTTACTTACCTTATGTATGTATGTG
TAGGGCGAATTTAGGCATTACCTAAGTGTTGCGGGATAGGGCGATGAAGGAAGGATCTAAAATGT
AAACTTCATATCATTTCTTCCCTCAATCGAAATAAACCACTTATTTTCTGCCTATTTCATCTCAT
TTCTTCCCCTTTCGTACTTCCTTCGCGCTGTGAGAGGCAGGGGTAAAATGCATAGAAGGCCCAGA
AATGGCCTATGAGGCGGTAGTAAATGTTTAGTTATGGCAGTGACTTCGTGAAAGGGAGAGAGGAA
AGAGAGAGGCAGATAGAAGGATAACCATAAAAGGAGAATCTATCCATATTGGGTCTTATGTAATT
ACGCTTTCTTATATATGTAATTACGCTTGAGCATCAATCTTTCTA
Right flanking sequence: Indices 686558 -- 687057
CATTCCTTCCCTCGGCTTAAAGAACTTACCGCCTTCGGCTTCCCCCGCCTTCGGCTTAAAGAACT
TCAATAACCCTGCTTGCTAAGCCATGTCCTTGCCCTCCACGCCTTCGGAAGAACTAAGCTTGCTA
CGCCTTCGGCTTCTACGCCCCGATAAGGTCCATGCCTACCTAGCGAGTCAAGGTACCCGCCCCAT
GCCTACCTAGTGAGTCAAGCCATCTAACCTACCTCCCTTAGGATCTTCCCATCCCATGCCTACCT
AGTGAGTCAAGCCATCCCACCTACCATAACTCATCTGGTAATAAGTCTACCCATGCCTACCTAGC
TTGAGTTCAGGTCAGATCACCTACCTACCTAACTCACCTACCTTGGGATCACCTACCTTAACTCA
CCTACCTCTGGGGATAGGCATACTACCTACCATAACTCACTTGCCTGCCTGGGTGTAGTCAAGGA
AGGATAGGGTTATTAGCCTTATCTTCCCTTATCTATAGGGTGATC
Found at i:686936 original size:32 final size:30
Alignment explanation
Indices: 686905--686959 Score: 96
Period size: 29 Copynumber: 1.9 Consensus size: 30
686895 CAGATCACCT
686905 ACCTACC-TAACTCACCTACCT-TGGGATC
1 ACCTACCTTAACTCACCTACCTCTGGGATC
686933 ACCTACCTTAACTCACCTACCTCTGGG
1 ACCTACCTTAACTCACCTACCTCTGGG
686960 GATAGGCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 7 0.28
29 14 0.56
30 4 0.16
ACGTcount: A:0.24, C:0.40, G:0.11, T:0.25
Consensus pattern (30 bp):
ACCTACCTTAACTCACCTACCTCTGGGATC
Left flanking sequence: Indices 686405 -- 686904
GGGAGAGAGGAAAGAGAGAGGCAGATAGAAGGATAACCATAAAAGGAGAATCTATCCATATTGGG
TCTTATGTAATTACGCTTTCTTATATATGTAATTACGCTTGAGCATCAATCTTTCTATGCTAATG
GCTAAGCTTGCTAATTGCTAAGCCATTCCTTCCCTCGGCTTAAAGAACTTACCGCCTTCGGCTTC
CCCCGCCTTCGGCTTAAAGAACTTCAATAACCCTGCTTGCTAAGCCATGTCCTTGCCCTCCACGC
CTTCGGAAGAACTAAGCTTGCTACGCCTTCGGCTTCTACGCCCCGATAAGGTCCATGCCTACCTA
GCGAGTCAAGGTACCCGCCCCATGCCTACCTAGTGAGTCAAGCCATCTAACCTACCTCCCTTAGG
ATCTTCCCATCCCATGCCTACCTAGTGAGTCAAGCCATCCCACCTACCATAACTCATCTGGTAAT
AAGTCTACCCATGCCTACCTAGCTTGAGTTCAGGTCAGATCACCT
Right flanking sequence: Indices 686960 -- 687459
GATAGGCATACTACCTACCATAACTCACTTGCCTGCCTGGGTGTAGTCAAGGAAGGATAGGGTTA
TTAGCCTTATCTTCCCTTATCTATAGGGTGATCTCACTTAGATACTTGGCCTTTCCCTTATTTTC
CCTTCCCTCAAAAATTATAACCTACTTCCTTCAACTACAGTTGCAATACTATAGTATAACCCTCC
CTGGTGATCGGTGAGTGAGGGTGATTCCGGAGTTTATCCCCTCTTTATTCCAGCCAGAACCACCC
TCACCCTGAATGAAACTCCTTCAGAATAACTCTCTTTATTCATCCATCAAGCAAGGGGAGGGCAA
GCAATCCGAATCCCGACTCCCCATAGCCCACACAGGGTGAGAGCCGGAATCCGCCCCCCCCACTT
GATTCGTTTCACGAGCGAGAGTGAAGCGGGCTACCAGTGGTATAAAGCGGGCACTTTCTTTTAAG
CTGCTTTTGTCAGGTTTTGTCGGGTCCGGGGGGCCTATCCCTTAG
Found at i:688083 original size:14 final size:14
Alignment explanation
Indices: 688059--688123 Score: 76
Period size: 14 Copynumber: 4.6 Consensus size: 14
688049 ATGACGATAC
*
688059 ATATATCTATATCT
1 ATATATATATATCT
*
688073 ATATCTATATATCT
1 ATATATATATATCT
688087 ATATATATATATCT
1 ATATATATATATCT
* * **
688101 AAAGATATATAGAT
1 ATATATATATATCT
688115 ATATATATA
1 ATATATATA
688124 GATATATAGA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 42 1.00
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.45
Consensus pattern (14 bp):
ATATATATATATCT
Left flanking sequence: Indices 687559 -- 688058
GCTCCTTTAGTTCTACCCCCCTTACTTAATAAATAATGAATCCTATGGGGAGAAACTACTCACTA
TCGAAATGAAAGACGATCGATTATCTACCCAAGGAGATATAAAATCCCACATACGAGAAAAGGTC
ACAAATATAGTTAAACCAAGTAGCATTGCAAAGGCATAGTGATAGTAGGGTCGGGATATCCCCGC
CCTCCGGACCGGACGTGAAGGTCCCCCCTCATCCGGCTCTCTGCAGGGGAATATCCACTCACTGC
TTCCCCCAATATCCCCCCCTTTGCCACATCATGGGGAGGTTTACAGGAGATCCCAGAGGCTCGCA
CTGCTATAGCAGCAGTCCGGCTGCTCCTGCCGAAATCATTGCTATTCATTCTCTCCCCCGTGCTC
TGGCAATTACGCTCCCTAGACTATTGACCGTACATGTAGTTAGGCTAGGGACAATGACGATCCGA
GATATATAATGGCAATAATATAGAAATCGATAATGATGACGATAC
Right flanking sequence: Indices 688124 -- 688623
GATATATAGATAGATAGATAGATAGATAGATAGATATACATATATCTATCTTGATACATATTGAG
ATATGGAATTTATATATAAATATATATAAATCTAGATATATCTAATAGACATGGCCATCGATATA
TCCATGTATCCTAATATATATATCTATATATTATATATAGTCTAATACGGCACAATACGATATAA
TGCAATGGGAGGGATGGTAGAGGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTC
CATAGGGACCTCGTGGCATACTACCGCCGCGACTCCCGCTAGATAGCCGCCCCTTTAGAGATCTC
TATTCTTACAGCCTCGTGGACGAAAGGAGGGAACTTATTGTAGGGATTCATTAACTTGCATTCCT
GCTGGCACTACTAGAAAGCTCCGGTCTTAACGCCCCCACTACTGCTGCCCTTCGGGTTCGTAGAG
TCGGGTTTACCGTTTACCCACAACGGAGGAGCCGCCCCCCTACTT
Found at i:688114 original size:8 final size:8
Alignment explanation
Indices: 688089--688161 Score: 64
Period size: 8 Copynumber: 9.6 Consensus size: 8
688079 ATATATCTAT
*
688089 ATATATAT
1 ATATATAG
* *
688097 ATCTAAAG
1 ATATATAG
688105 ATATATAG
1 ATATATAG
688113 --ATAT--
1 ATATATAG
688117 ATATATAG
1 ATATATAG
688125 ATATATAG
1 ATATATAG
*
688133 ATAGATAG
1 ATATATAG
*
688141 ATAGATAG
1 ATATATAG
*
688149 ATAGATAG
1 ATATATAG
688157 ATATA
1 ATATA
688162 CATATATCTA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
6 8 0.15
8 46 0.85
ACGTcount: A:0.51, C:0.01, G:0.14, T:0.34
Consensus pattern (8 bp):
ATATATAG
Left flanking sequence: Indices 687589 -- 688088
AAATAATGAATCCTATGGGGAGAAACTACTCACTATCGAAATGAAAGACGATCGATTATCTACCC
AAGGAGATATAAAATCCCACATACGAGAAAAGGTCACAAATATAGTTAAACCAAGTAGCATTGCA
AAGGCATAGTGATAGTAGGGTCGGGATATCCCCGCCCTCCGGACCGGACGTGAAGGTCCCCCCTC
ATCCGGCTCTCTGCAGGGGAATATCCACTCACTGCTTCCCCCAATATCCCCCCCTTTGCCACATC
ATGGGGAGGTTTACAGGAGATCCCAGAGGCTCGCACTGCTATAGCAGCAGTCCGGCTGCTCCTGC
CGAAATCATTGCTATTCATTCTCTCCCCCGTGCTCTGGCAATTACGCTCCCTAGACTATTGACCG
TACATGTAGTTAGGCTAGGGACAATGACGATCCGAGATATATAATGGCAATAATATAGAAATCGA
TAATGATGACGATACATATATCTATATCTATATCTATATATCTAT
Right flanking sequence: Indices 688162 -- 688661
CATATATCTATCTTGATACATATTGAGATATGGAATTTATATATAAATATATATAAATCTAGATA
TATCTAATAGACATGGCCATCGATATATCCATGTATCCTAATATATATATCTATATATTATATAT
AGTCTAATACGGCACAATACGATATAATGCAATGGGAGGGATGGTAGAGGGCTGCCTGCGCCCAA
AAGCGATGATTCACTTGTCCCCTTGTCCATAGGGACCTCGTGGCATACTACCGCCGCGACTCCCG
CTAGATAGCCGCCCCTTTAGAGATCTCTATTCTTACAGCCTCGTGGACGAAAGGAGGGAACTTAT
TGTAGGGATTCATTAACTTGCATTCCTGCTGGCACTACTAGAAAGCTCCGGTCTTAACGCCCCCA
CTACTGCTGCCCTTCGGGTTCGTAGAGTCGGGTTTACCGTTTACCCACAACGGAGGAGCCGCCCC
CCTACTTATCGGGGGGCAGGCGGCCACGGGTTATAACGCACTCCT
Found at i:688120 original size:12 final size:12
Alignment explanation
Indices: 688079--688151 Score: 69
Period size: 12 Copynumber: 6.2 Consensus size: 12
688069 ATCTATATCT
* *
688079 ATATATCTATAT
1 ATATATATATAG
*
688091 ATATATATCTA-
1 ATATATATATAG
*
688102 A-AGATATATAG
1 ATATATATATAG
688113 ATATATATATAG
1 ATATATATATAG
*
688125 ATATATAGATAG
1 ATATATATATAG
* *
688137 ATAGATAGATAG
1 ATATATATATAG
688149 ATA
1 ATA
688152 GATAGATATA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
10 7 0.13
11 2 0.04
12 43 0.83
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.37
Consensus pattern (12 bp):
ATATATATATAG
Left flanking sequence: Indices 687579 -- 688078
CTTACTTAATAAATAATGAATCCTATGGGGAGAAACTACTCACTATCGAAATGAAAGACGATCGA
TTATCTACCCAAGGAGATATAAAATCCCACATACGAGAAAAGGTCACAAATATAGTTAAACCAAG
TAGCATTGCAAAGGCATAGTGATAGTAGGGTCGGGATATCCCCGCCCTCCGGACCGGACGTGAAG
GTCCCCCCTCATCCGGCTCTCTGCAGGGGAATATCCACTCACTGCTTCCCCCAATATCCCCCCCT
TTGCCACATCATGGGGAGGTTTACAGGAGATCCCAGAGGCTCGCACTGCTATAGCAGCAGTCCGG
CTGCTCCTGCCGAAATCATTGCTATTCATTCTCTCCCCCGTGCTCTGGCAATTACGCTCCCTAGA
CTATTGACCGTACATGTAGTTAGGCTAGGGACAATGACGATCCGAGATATATAATGGCAATAATA
TAGAAATCGATAATGATGACGATACATATATCTATATCTATATCT
Right flanking sequence: Indices 688152 -- 688651
GATAGATATACATATATCTATCTTGATACATATTGAGATATGGAATTTATATATAAATATATATA
AATCTAGATATATCTAATAGACATGGCCATCGATATATCCATGTATCCTAATATATATATCTATA
TATTATATATAGTCTAATACGGCACAATACGATATAATGCAATGGGAGGGATGGTAGAGGGCTGC
CTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCCATAGGGACCTCGTGGCATACTACCGCC
GCGACTCCCGCTAGATAGCCGCCCCTTTAGAGATCTCTATTCTTACAGCCTCGTGGACGAAAGGA
GGGAACTTATTGTAGGGATTCATTAACTTGCATTCCTGCTGGCACTACTAGAAAGCTCCGGTCTT
AACGCCCCCACTACTGCTGCCCTTCGGGTTCGTAGAGTCGGGTTTACCGTTTACCCACAACGGAG
GAGCCGCCCCCCTACTTATCGGGGGGCAGGCGGCCACGGGTTATA
Found at i:688152 original size:12 final size:12
Alignment explanation
Indices: 688103--688159 Score: 78
Period size: 12 Copynumber: 4.8 Consensus size: 12
688093 ATATATCTAA
*
688103 AGATATATAGAT
1 AGATAGATAGAT
* *
688115 ATATATATAGAT
1 AGATAGATAGAT
*
688127 ATATAGATAGAT
1 AGATAGATAGAT
688139 AGATAGATAGAT
1 AGATAGATAGAT
688151 AGATAGATA
1 AGATAGATA
688160 TACATATATC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.32
Consensus pattern (12 bp):
AGATAGATAGAT
Left flanking sequence: Indices 687603 -- 688102
ATGGGGAGAAACTACTCACTATCGAAATGAAAGACGATCGATTATCTACCCAAGGAGATATAAAA
TCCCACATACGAGAAAAGGTCACAAATATAGTTAAACCAAGTAGCATTGCAAAGGCATAGTGATA
GTAGGGTCGGGATATCCCCGCCCTCCGGACCGGACGTGAAGGTCCCCCCTCATCCGGCTCTCTGC
AGGGGAATATCCACTCACTGCTTCCCCCAATATCCCCCCCTTTGCCACATCATGGGGAGGTTTAC
AGGAGATCCCAGAGGCTCGCACTGCTATAGCAGCAGTCCGGCTGCTCCTGCCGAAATCATTGCTA
TTCATTCTCTCCCCCGTGCTCTGGCAATTACGCTCCCTAGACTATTGACCGTACATGTAGTTAGG
CTAGGGACAATGACGATCCGAGATATATAATGGCAATAATATAGAAATCGATAATGATGACGATA
CATATATCTATATCTATATCTATATATCTATATATATATATCTAA
Right flanking sequence: Indices 688160 -- 688659
TACATATATCTATCTTGATACATATTGAGATATGGAATTTATATATAAATATATATAAATCTAGA
TATATCTAATAGACATGGCCATCGATATATCCATGTATCCTAATATATATATCTATATATTATAT
ATAGTCTAATACGGCACAATACGATATAATGCAATGGGAGGGATGGTAGAGGGCTGCCTGCGCCC
AAAAGCGATGATTCACTTGTCCCCTTGTCCATAGGGACCTCGTGGCATACTACCGCCGCGACTCC
CGCTAGATAGCCGCCCCTTTAGAGATCTCTATTCTTACAGCCTCGTGGACGAAAGGAGGGAACTT
ATTGTAGGGATTCATTAACTTGCATTCCTGCTGGCACTACTAGAAAGCTCCGGTCTTAACGCCCC
CACTACTGCTGCCCTTCGGGTTCGTAGAGTCGGGTTTACCGTTTACCCACAACGGAGGAGCCGCC
CCCCTACTTATCGGGGGGCAGGCGGCCACGGGTTATAACGCACTC
Found at i:690087 original size:19 final size:20
Alignment explanation
Indices: 690050--690089 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
690040 TGGGCGCACT
690050 CATGCCTACCCTCCCTCATG
1 CATGCCTACCCTCCCTCATG
*
690070 CATGCCTA-CCTTCCTCATG
1 CATGCCTACCCTCCCTCATG
690089 C
1 C
690090 CAGGCATACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.15, C:0.47, G:0.10, T:0.28
Consensus pattern (20 bp):
CATGCCTACCCTCCCTCATG
Left flanking sequence: Indices 689550 -- 690049
CTACCTTTCTTCTTCAAATGGGTCCGCCTAGAAGGAAGTATTTACCCCTACCTACCTGATAGGGC
CTTTCTTCTTAAAATAGGTCCGCCTAGAACTATTCACCTTGGCCTTGCCATGCCTAAGTAACGTG
TAAGGGCCTTGCCATGCCTTATGTAACGAAGGCCCACACCGGGGGTCCTGGCAATGCCTCTTACT
TTATTTACATGCACTTGACTGTATAAAATAGGTCCGCCTATAACGTGCGTGCCCTGTTTTCTTCC
CTCAATGCTATGCCTTATGTCACGAAGTAAGTGTACACCTGGAAAGTCATTCCAATGCCAGGTCT
TGTATTGTATCCCAACCCTTCTCATTTCGGGCCCTTCTCATACCCGCCATAGTATCCCAACCAGG
CATGGGCACCCCACCTACCAGCGATATGGTAGGTGGCCAGGCTAGGCACTACTGCCATGCATGCC
TACCCAAGCATATTACTTACGAGCATGCCATCCTCTGGGCGCACT
Right flanking sequence: Indices 690090 -- 690589
CAGGCATACCAGGCTAGGCGCTATATGACTTTTGCCTACCTGGACCAGGCTAGGCATAACACCTT
ACTTACGAGCATGCCAGGCATAGGCATCCCACCTACCTAGCTACGAATATCCCAACCCTTCTAAT
ACCCGGCCGGTAAGTACCTTACCTACCTGAGCTACGCGAAGGCCCCTTATAATTAAAGTAGTTAG
TTAAGCCCCCTTATAATTTTAGTACCCAACCCTTCTCACTTATTTCCTTGGCTTGGCTTACTTAT
ATCCTTTCCCCCTTATATATAATTCAAGTAGTACCTACCTGAGCTCTTTCTCTCTCACTCAGGAG
AGAGGGTCTAGGGAGTGAAATGCATTCGAAAGGGAAAGAGAGTAGTAAAAGTAAAGAAATATAAT
CTCCCAAATCGTACCAGAATATAGTATATAGACAAAGAGAGCTTTAAATAAATACATGCCGACGG
AAAGTCCGGCATTCGTCAAATCCACTTCACTTACTTATTACCTTG
Found at i:696536 original size:32 final size:33
Alignment explanation
Indices: 696495--696587 Score: 102
Period size: 32 Copynumber: 2.9 Consensus size: 33
696485 CTACGATAAC
*
696495 TACTCCTTTATCCATGAGGTAAGAATTGGGA-T
1 TACTCCTTTATTCATGAGGTAAGAATTGGGACT
* * *
696527 TACTCCTTTATTTC-TTAGGTAATAATT-AGACT
1 TACTCCTTTA-TTCATGAGGTAAGAATTGGGACT
* *
696559 TACTCCTTGATTGATGAGGTAAGAATTGG
1 TACTCCTTTATTCATGAGGTAAGAATTGG
696588 AAAAAACTAT
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
31 4 0.08
32 42 0.88
33 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TACTCCTTTATTCATGAGGTAAGAATTGGGACT
Left flanking sequence: Indices 695995 -- 696494
TTCCTTAAGGCAAGTAAGAAGGCTTAAGGTAGCGAGGACTAGTATTAGAGAGGATCTGTAACAAC
TAGCAGGCGGTAAGGAAGACCAGTAATTCAATACCATCTGGTGGTGCCTGCTCTTGGTTGGGGGG
GGGTTCCGGCTGTTCCTGCCTGTGTGCTTGTTCGGGGGTTCCGGTTCTGGTTCCGAGGTTCCGGT
TCTGAGGTGAGATGAGAGGGGGTGAGGCGTGGAGAGAGTTGAGGTGAGAGGGCTCCAGTTTCTGG
TTCCAGGTCTGGGTCCCTTTCTATTGGTGCTGTGCTACCAGTCTGTGTGACCTACTCGTTCGGGA
GAGTCGTCTACATTGACTTGACCTTACCTTCTTTATATATGTAATTACGCTTTTCTTTTGGTAAG
ACCTTTGCAAAGAAAGATAGGCCTACCATCCTTCCTTCACAACCAATTCGTTGCTACGCCTGCCC
TCGCTGCGCCCTAACTATAAGTACCTACCCCTACCCTACGATAAC
Right flanking sequence: Indices 696588 -- 697087
AAAAAACTATCTCCTTCCTCCTTGTTGGTGATGTTTGCAGTAGGATGGCTCCCCAACCCTACCCT
CAAGCTACATTTTGGCCACTCCACTGGGGAGCTCATCAACCCTTCCCTCTCTTGAGTGAAGGCTC
TCTCCTCTCTTCTCTATCATTTTTCCTCCCTTGTTCCTTGGACTATGGAGACCTCTTCTGCATCT
TCTAATGTTTTTTCCCTAGTTCCATGCATATTGGCATCAACCATCTCTACCCTCAAAACATGTCT
AACCTATCTCATATTACTGAAATGAGTATTATTAATATACCTGCTAGTAGCAATCCATGTACTCA
TACAAGAATTATTTCATGGCCTTATATGACAGGGAACCTCCCCCCTTATTACTAAATAAACCAAG
TTAACCGTGGAGGATATCCACTACTTCCTCCCACCCTAACACCTATCCCTTCTCCTCCTAGCCAA
GTTGATCATACCACTTTTCCTTCTTCTTCCAACCACATAAACATA
Found at i:698780 original size:15 final size:15
Alignment explanation
Indices: 698760--698789 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
698750 TGCATCGGAC
*
698760 GGCACAGGATGGCAT
1 GGCACAGCATGGCAT
698775 GGCACAGCATGGCAT
1 GGCACAGCATGGCAT
698790 AGCATGGTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.37, T:0.13
Consensus pattern (15 bp):
GGCACAGCATGGCAT
Left flanking sequence: Indices 698260 -- 698759
TATAATCTCTTTCTTATTGTAATGTTGCCCCCACTTGTTCAACCATGGCATTGTCACTTTCACCT
CTTGACCTTGATAGTGCTCCATGAGTGTCGTCACCTCTTGTGCCATCACCGGTTCCTTGTTTGCA
TATGTTGCCTTCTACACCCTATATGGATCCTTGCTTATGTATGTAACCTCATGTACCCTCCCTAG
TGTTCATTTAGCGTCGTTGCCTACCGTGCTCACACTAGGTTCGTGCTAAGTGTATGACACCTCGC
TTATTGCCCCTGCCTCATTATGTAACCTGCCTTATCGACCCTCGCTTATCGCGCCATATCGAACC
TGCCTTCTCGCTTTCGCATTATACTATTGCATTCCCAATTAAAACCATGCATCCACGCATACACG
CTTTCAGTTCCATCTGCAACTGCCAACATCTTCTGGGGTGGGTGGGGCGCTAATCCAATAGGCTA
ATCCAATGGAATCAAGGGGAATAATACTATGGCGCTGCATCGGAC
Right flanking sequence: Indices 698790 -- 699289
AGCATGGTACGGCACAGGGAAGGTTCCACCCATATTCTATACCCTCTACCTCCACCTCGACCCTT
GACCCTCAACCCCTCGAACTCTACCTCAATCTATACGGAACCTTTGGAATGTTACCTGGGTAAGC
TGGAATGTGAACGGTTGCATACTCGGCTTGGCTTGTCCACTCGCCGGGGTCACTCGGTTGCGCTG
CTCGGCTGGGCTGAACGGTTAAAAACAATGGGATAGGAATGAAGATGCATTACTTACGATGTACC
TCAGGATCATCGACTGACACAGGGTTGAATTCATGTTAGGAAGGTAGTGACATTCAGGGAGGCGA
GGGAAGCAGGTAGCCGTGGTGATCCAAGTGATTTATATATTGATTTTTCACTTACCAAGCTCCGC
GCAGACACAAAGTTCGCTTGGAACAAATCCCTCTACGATCCTTATCATTCATTATTTTTATTCAG
ATAAACCTCGTAGGAAATAAGTGTGAATCAGGGGTACTCAAAATG
Found at i:699422 original size:20 final size:19
Alignment explanation
Indices: 699388--699432 Score: 69
Period size: 16 Copynumber: 2.5 Consensus size: 19
699378 ATGCTTGCTG
699388 GGGAGCTGGATGGAC-G--
1 GGGAGCTGGATGGACGGAC
699404 GGGAGCTGGATGGACGGAC
1 GGGAGCTGGATGGACGGAC
699423 GGGAGCTGGA
1 GGGAGCTGGA
699433 CGTGGAGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.58
17 1 0.04
19 10 0.38
ACGTcount: A:0.20, C:0.13, G:0.56, T:0.11
Consensus pattern (19 bp):
GGGAGCTGGATGGACGGAC
Left flanking sequence: Indices 698888 -- 699387
TACGGAACCTTTGGAATGTTACCTGGGTAAGCTGGAATGTGAACGGTTGCATACTCGGCTTGGCT
TGTCCACTCGCCGGGGTCACTCGGTTGCGCTGCTCGGCTGGGCTGAACGGTTAAAAACAATGGGA
TAGGAATGAAGATGCATTACTTACGATGTACCTCAGGATCATCGACTGACACAGGGTTGAATTCA
TGTTAGGAAGGTAGTGACATTCAGGGAGGCGAGGGAAGCAGGTAGCCGTGGTGATCCAAGTGATT
TATATATTGATTTTTCACTTACCAAGCTCCGCGCAGACACAAAGTTCGCTTGGAACAAATCCCTC
TACGATCCTTATCATTCATTATTTTTATTCAGATAAACCTCGTAGGAAATAAGTGTGAATCAGGG
GTACTCAAAATGATTTGATTTTACCGAAATAGGCCATTTCAGGATGTTTACCTATGAGAGGCGGG
ATGTTCAGCTGGCAAAGCTAGGATTTATACAATTGATGCTTGCTG
Right flanking sequence: Indices 699433 -- 699932
CGTGGAGAAGGAAGGTGAGGCAGAGCAGTTAGAGGCCTAGGCAGGCTATTTAGAGAAAAACCGAT
TCTATGCCCATTTGAAGCACCCCGGAAACTTTCTTCCTGACCCGCTGAACTTTGAAACTGACGAC
CCAGAGGGACTCTTCCGAGGTACGAGGTCGAGGGTTTCTTTACTGAATAATTGCATTTCACAACG
TTTTCACTGATAGGGGGAGAGCCAAGCTAGGAGAATGGAATTGTTGCTTGCTCGCTTTACGAATC
ACCAAACGAGAGAAGAGAGATGAATGATGTGATGTTCCCAACAGTAAGCCCTTCACCAATAGCCC
CATGTTGTACCTACAGCGAACCAACAACGGAATGACACCATACCAGCTAGGTGAGGATATCGCAA
CATAATTTATATACCTTCATATACCACGTGTTACCTCTTGATTTGATTTTGGGCTTGATTGATTC
AATTGGAGTGAGAAGATCAATTGAGAAGATCGATTTGATTGAGAA
Found at i:700314 original size:15 final size:15
Alignment explanation
Indices: 700294--700323 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
700284 CCTGGGCCTA
*
700294 CGACTGTTATCTGGG
1 CGACTGTTACCTGGG
700309 CGACTGTTACCTGGG
1 CGACTGTTACCTGGG
700324 ACTACGGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.30
Consensus pattern (15 bp):
CGACTGTTACCTGGG
Left flanking sequence: Indices 699794 -- 700293
ACCATACCAGCTAGGTGAGGATATCGCAACATAATTTATATACCTTCATATACCACGTGTTACCT
CTTGATTTGATTTTGGGCTTGATTGATTCAATTGGAGTGAGAAGATCAATTGAGAAGATCGATTT
GATTGAGAAGATCGGATTGATTCAATTTTAGTCAGAAGATCGGGATCGGATTGAGAAGATCGGAT
TGATGAGATTGATGCTACCCACCCAACTGAGGGAGGAGATTGTTCACTGATTGATCGAGGTTTTC
CACTGATTGAGGTTCACTGATTGATGTTCCCAACTCCCAACCGTCACACCAGCTACACTCCCACC
TGTACAACAACTGGGCCTACGAATCTCACTTTACAACAACCTGCTCACCTACTTGGATTGGATAC
TGCTCACTTGGCCGGGAATACAATGCTCACCCCCGCTTTACTCTGCTCAAACACTTGCCTGGGCC
TACGAATGCTCACCTAGGCGACAACCTGCCCAACACCTGGGCCTA
Right flanking sequence: Indices 700324 -- 700823
ACTACGGAAACTGTTACACAGGACGGGAGGGAATATGTTACCTCGGACTATGCCGGGGGTCCTGC
CCAACTATGACTACACAAGACTGAACAGCTAGGTGGTGCTTATTACACGTAGTTGCTTATATACG
TTCTTATTACGTGCGACCTCTTTAGTTTATTAGTGTTGTTGCTTGATCGATATCATTAGAGTCAG
AAGATCAGACGAATCAGAAGATCCAATCTTTTATGTGAGAAGATCCAATCAGTGAAGTCAGAAGA
TCCGACGGATATAGCTACCACATAGCTTTATATACGAAGCATAGCTAAGACATAAATTACTTATT
GAGCGTAGATAAACATATATCTAAAGTATACGCGCATGGAGGAGGTTACCCGGTAGAGGAGGAGG
TTACCTGTTTTCACTGATTGAGGTTACCCGCATTGATGTTACCATTAAGCCCTTTTACCACTTCC
CCTACTCTGCTCACTCCCAATTGGCCGGGCTCACCCAATAGGCTG
Found at i:700581 original size:22 final size:22
Alignment explanation
Indices: 700532--700586 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
700522 ATCAGACGAA
** * *
700532 TCAGAAGATCCAATCTTTTATG
1 TCAGAAGATCCAATCAGTGAAG
*
700554 TGAGAAGATCCAATCAGTGAAG
1 TCAGAAGATCCAATCAGTGAAG
700576 TCAGAAGATCC
1 TCAGAAGATCC
700587 GACGGATATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (22 bp):
TCAGAAGATCCAATCAGTGAAG
Left flanking sequence: Indices 700032 -- 700531
TCACTGATTGATCGAGGTTTTCCACTGATTGAGGTTCACTGATTGATGTTCCCAACTCCCAACCG
TCACACCAGCTACACTCCCACCTGTACAACAACTGGGCCTACGAATCTCACTTTACAACAACCTG
CTCACCTACTTGGATTGGATACTGCTCACTTGGCCGGGAATACAATGCTCACCCCCGCTTTACTC
TGCTCAAACACTTGCCTGGGCCTACGAATGCTCACCTAGGCGACAACCTGCCCAACACCTGGGCC
TACGACTGTTATCTGGGCGACTGTTACCTGGGACTACGGAAACTGTTACACAGGACGGGAGGGAA
TATGTTACCTCGGACTATGCCGGGGGTCCTGCCCAACTATGACTACACAAGACTGAACAGCTAGG
TGGTGCTTATTACACGTAGTTGCTTATATACGTTCTTATTACGTGCGACCTCTTTAGTTTATTAG
TGTTGTTGCTTGATCGATATCATTAGAGTCAGAAGATCAGACGAA
Right flanking sequence: Indices 700587 -- 701086
GACGGATATAGCTACCACATAGCTTTATATACGAAGCATAGCTAAGACATAAATTACTTATTGAG
CGTAGATAAACATATATCTAAAGTATACGCGCATGGAGGAGGTTACCCGGTAGAGGAGGAGGTTA
CCTGTTTTCACTGATTGAGGTTACCCGCATTGATGTTACCATTAAGCCCTTTTACCACTTCCCCT
ACTCTGCTCACTCCCAATTGGCCGGGCTCACCCAATAGGCTGGGCTCGCGAACCTGGGAATACTC
TGCTCACACACTTGGCCTGGGATCGCTTGGATACTGCTCACTTGGCTGGCTTCACACACTTGGCT
TAAACCACTTGGCTTAAACCACTTGGCTTGGCCTACACCAAACAGTACACCTACTGGGCCTACGA
AAACCTGTTACCCGCGGGACTACTACCACCTACCCACCAGTCCACAGGGAGGGAATACACCAATC
CGACACCTGGGACTACGGAAACCAGTACTCCAACTATTACACAAT
Found at i:700817 original size:18 final size:18
Alignment explanation
Indices: 700794--700828 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
700784 TCTGCTCACT
*
700794 CCCAATTGGCCGGGCTCA
1 CCCAATAGGCCGGGCTCA
*
700812 CCCAATAGGCTGGGCTC
1 CCCAATAGGCCGGGCTC
700829 GCGAACCTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.37, G:0.29, T:0.17
Consensus pattern (18 bp):
CCCAATAGGCCGGGCTCA
Left flanking sequence: Indices 700294 -- 700793
CGACTGTTATCTGGGCGACTGTTACCTGGGACTACGGAAACTGTTACACAGGACGGGAGGGAATA
TGTTACCTCGGACTATGCCGGGGGTCCTGCCCAACTATGACTACACAAGACTGAACAGCTAGGTG
GTGCTTATTACACGTAGTTGCTTATATACGTTCTTATTACGTGCGACCTCTTTAGTTTATTAGTG
TTGTTGCTTGATCGATATCATTAGAGTCAGAAGATCAGACGAATCAGAAGATCCAATCTTTTATG
TGAGAAGATCCAATCAGTGAAGTCAGAAGATCCGACGGATATAGCTACCACATAGCTTTATATAC
GAAGCATAGCTAAGACATAAATTACTTATTGAGCGTAGATAAACATATATCTAAAGTATACGCGC
ATGGAGGAGGTTACCCGGTAGAGGAGGAGGTTACCTGTTTTCACTGATTGAGGTTACCCGCATTG
ATGTTACCATTAAGCCCTTTTACCACTTCCCCTACTCTGCTCACT
Right flanking sequence: Indices 700829 -- 701328
GCGAACCTGGGAATACTCTGCTCACACACTTGGCCTGGGATCGCTTGGATACTGCTCACTTGGCT
GGCTTCACACACTTGGCTTAAACCACTTGGCTTAAACCACTTGGCTTGGCCTACACCAAACAGTA
CACCTACTGGGCCTACGAAAACCTGTTACCCGCGGGACTACTACCACCTACCCACCAGTCCACAG
GGAGGGAATACACCAATCCGACACCTGGGACTACGGAAACCAGTACTCCAACTATTACACAATAC
AGACCAGCTAGAGATCATACCACGTAGCTTATTATAGACGTGATTATATCCTGTTACCTCTTTAG
CTGATTAGTGTTGCTTGATGGAGTTACTTGATGAACTTGATTGATCCATACCCCCCCATTGTTCC
CAACTGCCAACCGTCACACCAATCCCAACAACTGGGCCTACTCTGCCAACAAAAAAACCAGGCGG
ACCTAGACCCATGGGAGGGACCTACCTGAGAGATTCGCCCGTTGA
Found at i:700910 original size:14 final size:14
Alignment explanation
Indices: 700903--700940 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
700893 TGGCTTCACA
700903 CACTTGGCTTAAAC
1 CACTTGGCTTAAAC
700917 CACTTGGCTTAAAC
1 CACTTGGCTTAAAC
700931 CACTTGGCTT
1 CACTTGGCTT
700941 GGCCTACACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (14 bp):
CACTTGGCTTAAAC
Left flanking sequence: Indices 700403 -- 700902
ACAAGACTGAACAGCTAGGTGGTGCTTATTACACGTAGTTGCTTATATACGTTCTTATTACGTGC
GACCTCTTTAGTTTATTAGTGTTGTTGCTTGATCGATATCATTAGAGTCAGAAGATCAGACGAAT
CAGAAGATCCAATCTTTTATGTGAGAAGATCCAATCAGTGAAGTCAGAAGATCCGACGGATATAG
CTACCACATAGCTTTATATACGAAGCATAGCTAAGACATAAATTACTTATTGAGCGTAGATAAAC
ATATATCTAAAGTATACGCGCATGGAGGAGGTTACCCGGTAGAGGAGGAGGTTACCTGTTTTCAC
TGATTGAGGTTACCCGCATTGATGTTACCATTAAGCCCTTTTACCACTTCCCCTACTCTGCTCAC
TCCCAATTGGCCGGGCTCACCCAATAGGCTGGGCTCGCGAACCTGGGAATACTCTGCTCACACAC
TTGGCCTGGGATCGCTTGGATACTGCTCACTTGGCTGGCTTCACA
Right flanking sequence: Indices 700941 -- 701440
GGCCTACACCAAACAGTACACCTACTGGGCCTACGAAAACCTGTTACCCGCGGGACTACTACCAC
CTACCCACCAGTCCACAGGGAGGGAATACACCAATCCGACACCTGGGACTACGGAAACCAGTACT
CCAACTATTACACAATACAGACCAGCTAGAGATCATACCACGTAGCTTATTATAGACGTGATTAT
ATCCTGTTACCTCTTTAGCTGATTAGTGTTGCTTGATGGAGTTACTTGATGAACTTGATTGATCC
ATACCCCCCCATTGTTCCCAACTGCCAACCGTCACACCAATCCCAACAACTGGGCCTACTCTGCC
AACAAAAAAACCAGGCGGACCTAGACCCATGGGAGGGACCTACCTGAGAGATTCGCCCGTTGATG
TCTTGCTTACTTACGATAACCAGAAGGCCTAGGGAGGTAGGTTAGAACCGATAGGTCAACTGCCT
GGGGAATTGCCGATAAATTAAATAAGCTGCACGTTACGGAACCAT
Found at i:701661 original size:13 final size:13
Alignment explanation
Indices: 701643--701667 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
701633 CTTCACGAGC
701643 ACCGGACCCGGAA
1 ACCGGACCCGGAA
701656 ACCGGACCCGGA
1 ACCGGACCCGGA
701668 TCCACTCCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.40, G:0.32, T:0.00
Consensus pattern (13 bp):
ACCGGACCCGGAA
Left flanking sequence: Indices 701143 -- 701642
TACCTCTTTAGCTGATTAGTGTTGCTTGATGGAGTTACTTGATGAACTTGATTGATCCATACCCC
CCCATTGTTCCCAACTGCCAACCGTCACACCAATCCCAACAACTGGGCCTACTCTGCCAACAAAA
AAACCAGGCGGACCTAGACCCATGGGAGGGACCTACCTGAGAGATTCGCCCGTTGATGTCTTGCT
TACTTACGATAACCAGAAGGCCTAGGGAGGTAGGTTAGAACCGATAGGTCAACTGCCTGGGGAAT
TGCCGATAAATTAAATAAGCTGCACGTTACGGAACCATCAGTAGTTGATTGTCCCTACATCGACC
CTTAACGCCTAGGAACAATGCTATGGGACTACATGCTGCAACAACTAGACATACCGAGAGAGAGA
CATGCATGGTTGGTTCATATACGTTGATATACCGAGTTACCTCTTGATTTTATTGCGGGCTTGCT
AGATTTATTTATTTAGATGGCCGTGCCTCATCTCACTTCACGAGC
Right flanking sequence: Indices 701668 -- 702167
TCCACTCCCCCACACAAGCATCGAACCACCCGTCCCATCTAATCTAATAAATTAAGGCAGTAGTT
CATTCATAGGGCAATTCCGACGATCCATCCCAAAAGTGTGAGTAGCGGTCCACCAACTAAAAGTA
ATCCAGTAGGCAGGCATAAGCAGCAAGTTTTCCCTAAAAGTAAGAAGGTATGAAGTGTTAAAGTA
GTTGGATTAAGCACTAACTTGTTAAAGCTGGGGTTGTGCAAGTGCTTTATTTATTAAGAAATAGT
ATCTGGCTGGGTAAAGGCTGTTCCCCCAACACAATAGCAATAGTGGTACCCACCAAGTACGTACC
AAGTAAGCATTCTTTAAGGAAGTGTGTGTTATCGAACGCAGGTGGTGAATGCTGTATCTATCCGA
ACGCCTGCACAACGAACGCTGTATATAAATAAAAAAAGGTAGTATGGAGAAATAACATGTATCCG
CCCAATATCGAAAGTTTAGGATCGAAGAGGAGCGGAGCGAGATTC
Found at i:703333 original size:35 final size:35
Alignment explanation
Indices: 703292--703363 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 35
703282 TATATATATA
*
703292 TATATATATATTATAGATGACC-TGCCCTTCTTCAACC
1 TATATAT-TA-TATAGATG-CCATACCCTTCTTCAACC
*
703329 TATATATTATATATATGCCATACCCTTCTTCAACC
1 TATATATTATATAGATGCCATACCCTTCTTCAACC
703364 AATGCCATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 2 0.06
35 21 0.66
36 2 0.06
37 7 0.22
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.39
Consensus pattern (35 bp):
TATATATTATATAGATGCCATACCCTTCTTCAACC
Left flanking sequence: Indices 702792 -- 703291
AATACCTAGCTTAATTACTTATATAGGAAAGCGTAATTACATATATAAAGAATGACTGGAATACC
AGAATTTTAAGCATTCGAATCTTCCAGTCATTCTTTATTTTATATACGTAATAAGACGCTTTTTC
TTCTCTATCTAGTGACCGAGTTAAGAGTTGGCTTTTCTGGTCAAGTCAATCCTTCGACAATGCTG
CTATTATATATGTAGTTATGCTTGCCTTATGACTTTCAACTTCGTATTTCGCGAGACCAAAGGGA
TGCTATTGCAATTCAATACTCGGCCGGTGAACTGTAAACTATTACATATCCATATCCATCTATCC
ATGGAATAGATAGTGAGATATACATCTATATCCCTACCTATACGAATCGATTCATATATCTATTT
ATATACTGGAATAAATGGAATGGATTAATCAATATTTATTGAGATAGATGTATCTCGATATATCG
CTAGATCAATGTATATCTAGATATCTATATCTTTATATATATATA
Right flanking sequence: Indices 703364 -- 703863
AATGCCATCATACAGGATACGGGAGAGACATACGGGATACGGTAGGAGCGTGGGTGTTATTTAGC
ATTGTTGCTTCATGCCCTGCCCTTACCAACCCCATCATACGGGAGGGAGCGGTTGCTTCATACCC
TTCTTCACCAATGCCATCATACGTGGCTTCCACTCGCATGCAGTACACGGATGGATGCCGCCCCT
CCATATGCCTGCAACGATCCAGCAGCACAAATATAATGCAAAGCACTAGTTACATATGCCTGCAA
CGATCCAGCAGCACAAATCCCATGCCAAGCAGGTCAAAATAAAGCTTTACTCAATTCATATGGTG
AAACTCAATTAGGATGCATCCAAAAGAATTGGAAAGGTGGCCAACAGTCAACTTGAAAGGAGGTC
GATCTCCTCGTTATAAGGTTGATACGATCGGTGAAAGATCTCCTCTCCCCTGGTAGGTCATTGAA
AATGTGGATCAAAGCAATCTCCTTCACGTCACGTTCGGAATCGGG
Found at i:709105 original size:38 final size:38
Alignment explanation
Indices: 709054--709129 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
709044 TTGGCCTGGC
709054 GACAATGCTGCTATTACATATGTAATTACGCTTTAGCA
1 GACAATGCTGCTATTACATATGTAATTACGCTTTAGCA
*
709092 GACAATGCTGCTATTATATATGTAATTACGCTTTAGCA
1 GACAATGCTGCTATTACATATGTAATTACGCTTTAGCA
709130 TCCTAAAGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (38 bp):
GACAATGCTGCTATTACATATGTAATTACGCTTTAGCA
Left flanking sequence: Indices 708554 -- 709053
CACAGGAACAGACACAATAGATCCAGTGCGCTTGACGAGAGATCCTTCTTTGATGGCGGTATCAC
TACCAAATACCACGATACCTACATTCTCATTCTCAAGATTCAACGCTATTCCTTGCCCTAAGAAG
GACAAGACCTCCGGACCTTTCACACCACTGGCAAATTCGACCATTTCCCCGGCTTGAATCTCGTT
CAATCCATAGACACGTGCAATACCATCTCCAACTGAGACCACTCGACCGATCTCATCAACTTTTG
GTGCAATAGTTGGTAATTCTCCTTTCTAATAGAGTAGTGAGTTCCGCAGCTCCAGGATCTAATTT
CATACTTCAGGAACGAATGGATAGGGAGAAATCTACTTTACAAGATGATAAATAAAAGAGAATGG
GGCCTGGAAAAGCTTTCCTGTCACGAAGTATACTTATTTACTTACTTTCATTTATTAAAGTAAGG
AAAAATAGCCAGCAGGGTTGTGATAAAATGAAGAGTTGGCCTGGC
Right flanking sequence: Indices 709130 -- 709629
TCCTAAAGTAAGTTAGGTCAATAGTTCGGAAAGTAAGGGATATGGAAAGCCTGGTATTCGTCCAA
TGATCTATGGAGTTATGGCTGATTTTATCTGGCTTTATGCACTTAGATACCTGGCTAGTTATCGA
AATGATATGAGTCAATATAGAAACACTTCGCTAAATATCTTTGGAGTTATGCATCTCCTTGGCTT
TATGCACTTATCTCCCCATTAGTTACCGAAACGAGATAGTAGTTTACGTGAAAGCAACACTTCGT
TAAATAGGGGAAAAAGACAAATACTTGGGGGGGCTTTCCAGGGCCATTGAAAGACTTTCCTGGGG
CTATATAAGGACTTGCCTGGAATATCTGTCCTGTACTTTCTTTTTACACGCTACCTCTGTTGACT
CACCGTATGTTGTGAGGATAGAGAGGTGGAGGAGGAAGTTTGGGGAGCTTTTACCTTTCTTCTTG
GCTTTGAATATACCAGACTGAGAAAACTTCACTGGCAATACGACG
Found at i:716156 original size:15 final size:15
Alignment explanation
Indices: 716136--716171 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
716126 CTTCTATCTC
*
716136 GGGTAATATTGAATG
1 GGGTAATATTGAACG
716151 GGGTAATATTGAACG
1 GGGTAATATTGAACG
716166 GGGTAA
1 GGGTAA
716172 GGTTGAACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.33, C:0.03, G:0.36, T:0.28
Consensus pattern (15 bp):
GGGTAATATTGAACG
Left flanking sequence: Indices 715636 -- 716135
GAAAGTAACCTGAATATGTTGATTGAGCATGGGGATATCATGAGATAAAATCAAGTAAGAAAGAA
AATTAGTCAGTGAATGATGGGGACGCCGTTCTAAGAAGATGCGGCAGTTGTCTGTCTGTGGGAAT
GCTGTTTCTCGTAATCTAGTTTTTGGTGGGAACACCTTTCTTGTAAGCTGGGTCCATTTGGGAAC
GCCTGCCCCTATCAGAGGACTAATAAGTTGCCTCTGGCCACACCACTATCCGGCTATCCTAATCA
GAAGAGTAATCAGTTGATAAAATCCAATCCAATTAGTCTCAATCGAAATACTCATAAGTAAAAAA
TTATTATTCCTGTCTCTAATTGAATATCCGAGCCAAGTATCCCAGGCCAGCAGGAAGTGAACCTG
TCTGTGTTCAGTGGGTAAGGGTCTAGACTCAAGGGTCGATGTTCCCCGTATGATGGCAACTTCTT
GGGTTCCCTTCTGGTATCGTGTGCTGGGGGCCTTCCTTCTATCTC
Right flanking sequence: Indices 716172 -- 716671
GGTTGAACAGGTATCCATTGATGTGATCCTTCTCCTCTCGGCCAGTGATGTGTTCCTTATCTTCA
CCTCTCTCGGCCATTGATGTGGTCCTTATCTCTCTCTTGGCCATTGAAGAGGGCCTTTTCTCTTG
TCTGTTGTCAACTTGGCTCAACCTATCCCCTGCCTGAATACTCATTGTGTCTGACCCTCAAATGG
TGCAACGTAAGTAAGCATCATCATTGCATCCAACCCAGGAAGGAACGTATGTGTTCCGTAGCGTT
AAGTGATGTGAGGGGTATGGGATAACTCTATTCTCTCGGACATGGTGACTCGGGTACGGTGACTC
GGGTATGTCACTTGCTGTGGAACGGGGTATCGTGTGATGGTGACCTTCTCTCTTCTTTCGGTTAT
GTGGTGAAGTTGAGTTGTTGGAGATGGAAGCACAGAAGCCTTCCTTATTCATCGTAGTCTGAAGA
GGCTCAGGAGTGCAGGTTCTCTTTCTTCTGCCCCACTGTCAAGCT
Found at i:716177 original size:15 final size:15
Alignment explanation
Indices: 716136--716179 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
716126 CTTCTATCTC
* *
716136 GGGTAATATTGAATG
1 GGGTAAGATTGAACG
*
716151 GGGTAATATTGAACG
1 GGGTAAGATTGAACG
*
716166 GGGTAAGGTTGAAC
1 GGGTAAGATTGAAC
716180 AGGTATCCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.32, C:0.05, G:0.36, T:0.27
Consensus pattern (15 bp):
GGGTAAGATTGAACG
Left flanking sequence: Indices 715636 -- 716135
GAAAGTAACCTGAATATGTTGATTGAGCATGGGGATATCATGAGATAAAATCAAGTAAGAAAGAA
AATTAGTCAGTGAATGATGGGGACGCCGTTCTAAGAAGATGCGGCAGTTGTCTGTCTGTGGGAAT
GCTGTTTCTCGTAATCTAGTTTTTGGTGGGAACACCTTTCTTGTAAGCTGGGTCCATTTGGGAAC
GCCTGCCCCTATCAGAGGACTAATAAGTTGCCTCTGGCCACACCACTATCCGGCTATCCTAATCA
GAAGAGTAATCAGTTGATAAAATCCAATCCAATTAGTCTCAATCGAAATACTCATAAGTAAAAAA
TTATTATTCCTGTCTCTAATTGAATATCCGAGCCAAGTATCCCAGGCCAGCAGGAAGTGAACCTG
TCTGTGTTCAGTGGGTAAGGGTCTAGACTCAAGGGTCGATGTTCCCCGTATGATGGCAACTTCTT
GGGTTCCCTTCTGGTATCGTGTGCTGGGGGCCTTCCTTCTATCTC
Right flanking sequence: Indices 716180 -- 716679
AGGTATCCATTGATGTGATCCTTCTCCTCTCGGCCAGTGATGTGTTCCTTATCTTCACCTCTCTC
GGCCATTGATGTGGTCCTTATCTCTCTCTTGGCCATTGAAGAGGGCCTTTTCTCTTGTCTGTTGT
CAACTTGGCTCAACCTATCCCCTGCCTGAATACTCATTGTGTCTGACCCTCAAATGGTGCAACGT
AAGTAAGCATCATCATTGCATCCAACCCAGGAAGGAACGTATGTGTTCCGTAGCGTTAAGTGATG
TGAGGGGTATGGGATAACTCTATTCTCTCGGACATGGTGACTCGGGTACGGTGACTCGGGTATGT
CACTTGCTGTGGAACGGGGTATCGTGTGATGGTGACCTTCTCTCTTCTTTCGGTTATGTGGTGAA
GTTGAGTTGTTGGAGATGGAAGCACAGAAGCCTTCCTTATTCATCGTAGTCTGAAGAGGCTCAGG
AGTGCAGGTTCTCTTTCTTCTGCCCCACTGTCAAGCTTCAATCAA
Found at i:716279 original size:30 final size:30
Alignment explanation
Indices: 716186--716283 Score: 103
Period size: 34 Copynumber: 3.2 Consensus size: 30
716176 GAACAGGTAT
716186 CCATTGATGTGATCC-T-TCTC-CTCTCGG
1 CCATTGATGTGATCCTTATCTCTCTCTCGG
* *
716213 CCAGTGATGTGTTCCTTATCTTCACCTCTCTCGG
1 CCATTGATGTGATCCTTATC-T---CTCTCTCGG
* *
716247 CCATTGATGTGGTCCTTATCTCTCTCTTGG
1 CCATTGATGTGATCCTTATCTCTCTCTCGG
716277 CCATTGA
1 CCATTGA
716284 AGAGGGCCTT
Statistics
Matches: 59, Mismatches: 5, Indels: 11
0.79 0.07 0.15
Matches are distributed among these distances:
27 13 0.22
28 1 0.02
29 2 0.03
30 16 0.27
33 2 0.03
34 25 0.42
ACGTcount: A:0.12, C:0.31, G:0.18, T:0.39
Consensus pattern (30 bp):
CCATTGATGTGATCCTTATCTCTCTCTCGG
Left flanking sequence: Indices 715686 -- 716185
TCAAGTAAGAAAGAAAATTAGTCAGTGAATGATGGGGACGCCGTTCTAAGAAGATGCGGCAGTTG
TCTGTCTGTGGGAATGCTGTTTCTCGTAATCTAGTTTTTGGTGGGAACACCTTTCTTGTAAGCTG
GGTCCATTTGGGAACGCCTGCCCCTATCAGAGGACTAATAAGTTGCCTCTGGCCACACCACTATC
CGGCTATCCTAATCAGAAGAGTAATCAGTTGATAAAATCCAATCCAATTAGTCTCAATCGAAATA
CTCATAAGTAAAAAATTATTATTCCTGTCTCTAATTGAATATCCGAGCCAAGTATCCCAGGCCAG
CAGGAAGTGAACCTGTCTGTGTTCAGTGGGTAAGGGTCTAGACTCAAGGGTCGATGTTCCCCGTA
TGATGGCAACTTCTTGGGTTCCCTTCTGGTATCGTGTGCTGGGGGCCTTCCTTCTATCTCGGGTA
ATATTGAATGGGGTAATATTGAACGGGGTAAGGTTGAACAGGTAT
Right flanking sequence: Indices 716284 -- 716783
AGAGGGCCTTTTCTCTTGTCTGTTGTCAACTTGGCTCAACCTATCCCCTGCCTGAATACTCATTG
TGTCTGACCCTCAAATGGTGCAACGTAAGTAAGCATCATCATTGCATCCAACCCAGGAAGGAACG
TATGTGTTCCGTAGCGTTAAGTGATGTGAGGGGTATGGGATAACTCTATTCTCTCGGACATGGTG
ACTCGGGTACGGTGACTCGGGTATGTCACTTGCTGTGGAACGGGGTATCGTGTGATGGTGACCTT
CTCTCTTCTTTCGGTTATGTGGTGAAGTTGAGTTGTTGGAGATGGAAGCACAGAAGCCTTCCTTA
TTCATCGTAGTCTGAAGAGGCTCAGGAGTGCAGGTTCTCTTTCTTCTGCCCCACTGTCAAGCTTC
AATCAAGGGCGCGGAGCGGTCGATCCAACAACAAGTTGTCCAACTGGGCAAAGGGTATGGGAAAA
TGAGAAAGGTAAATAGAGCAATGTTCTGCTGAACCCCACCCCATA
Found at i:716299 original size:30 final size:30
Alignment explanation
Indices: 716238--716299 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
716228 TTATCTTCAC
* * *
716238 CTCTCTCGGCCATTGATGTGGTCCTTATCT
1 CTCTCTCGGCCATTGAAGAGGGCCTTATCT
* *
716268 CTCTCTTGGCCATTGAAGAGGGCCTTTTCT
1 CTCTCTCGGCCATTGAAGAGGGCCTTATCT
716298 CT
1 CT
716300 TGTCTGTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.11, C:0.29, G:0.21, T:0.39
Consensus pattern (30 bp):
CTCTCTCGGCCATTGAAGAGGGCCTTATCT
Left flanking sequence: Indices 715738 -- 716237
GATGCGGCAGTTGTCTGTCTGTGGGAATGCTGTTTCTCGTAATCTAGTTTTTGGTGGGAACACCT
TTCTTGTAAGCTGGGTCCATTTGGGAACGCCTGCCCCTATCAGAGGACTAATAAGTTGCCTCTGG
CCACACCACTATCCGGCTATCCTAATCAGAAGAGTAATCAGTTGATAAAATCCAATCCAATTAGT
CTCAATCGAAATACTCATAAGTAAAAAATTATTATTCCTGTCTCTAATTGAATATCCGAGCCAAG
TATCCCAGGCCAGCAGGAAGTGAACCTGTCTGTGTTCAGTGGGTAAGGGTCTAGACTCAAGGGTC
GATGTTCCCCGTATGATGGCAACTTCTTGGGTTCCCTTCTGGTATCGTGTGCTGGGGGCCTTCCT
TCTATCTCGGGTAATATTGAATGGGGTAATATTGAACGGGGTAAGGTTGAACAGGTATCCATTGA
TGTGATCCTTCTCCTCTCGGCCAGTGATGTGTTCCTTATCTTCAC
Right flanking sequence: Indices 716300 -- 716799
TGTCTGTTGTCAACTTGGCTCAACCTATCCCCTGCCTGAATACTCATTGTGTCTGACCCTCAAAT
GGTGCAACGTAAGTAAGCATCATCATTGCATCCAACCCAGGAAGGAACGTATGTGTTCCGTAGCG
TTAAGTGATGTGAGGGGTATGGGATAACTCTATTCTCTCGGACATGGTGACTCGGGTACGGTGAC
TCGGGTATGTCACTTGCTGTGGAACGGGGTATCGTGTGATGGTGACCTTCTCTCTTCTTTCGGTT
ATGTGGTGAAGTTGAGTTGTTGGAGATGGAAGCACAGAAGCCTTCCTTATTCATCGTAGTCTGAA
GAGGCTCAGGAGTGCAGGTTCTCTTTCTTCTGCCCCACTGTCAAGCTTCAATCAAGGGCGCGGAG
CGGTCGATCCAACAACAAGTTGTCCAACTGGGCAAAGGGTATGGGAAAATGAGAAAGGTAAATAG
AGCAATGTTCTGCTGAACCCCACCCCATAATCTGATCTAATCTCA
Found at i:716492 original size:14 final size:14
Alignment explanation
Indices: 716475--716501 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
716465 TCTCGGACAT
716475 GGTGACTCGGGTAC
1 GGTGACTCGGGTAC
716489 GGTGACTCGGGTA
1 GGTGACTCGGGTA
716502 TGTCACTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.19, G:0.44, T:0.22
Consensus pattern (14 bp):
GGTGACTCGGGTAC
Left flanking sequence: Indices 715975 -- 716474
TCTAATTGAATATCCGAGCCAAGTATCCCAGGCCAGCAGGAAGTGAACCTGTCTGTGTTCAGTGG
GTAAGGGTCTAGACTCAAGGGTCGATGTTCCCCGTATGATGGCAACTTCTTGGGTTCCCTTCTGG
TATCGTGTGCTGGGGGCCTTCCTTCTATCTCGGGTAATATTGAATGGGGTAATATTGAACGGGGT
AAGGTTGAACAGGTATCCATTGATGTGATCCTTCTCCTCTCGGCCAGTGATGTGTTCCTTATCTT
CACCTCTCTCGGCCATTGATGTGGTCCTTATCTCTCTCTTGGCCATTGAAGAGGGCCTTTTCTCT
TGTCTGTTGTCAACTTGGCTCAACCTATCCCCTGCCTGAATACTCATTGTGTCTGACCCTCAAAT
GGTGCAACGTAAGTAAGCATCATCATTGCATCCAACCCAGGAAGGAACGTATGTGTTCCGTAGCG
TTAAGTGATGTGAGGGGTATGGGATAACTCTATTCTCTCGGACAT
Right flanking sequence: Indices 716502 -- 717001
TGTCACTTGCTGTGGAACGGGGTATCGTGTGATGGTGACCTTCTCTCTTCTTTCGGTTATGTGGT
GAAGTTGAGTTGTTGGAGATGGAAGCACAGAAGCCTTCCTTATTCATCGTAGTCTGAAGAGGCTC
AGGAGTGCAGGTTCTCTTTCTTCTGCCCCACTGTCAAGCTTCAATCAAGGGCGCGGAGCGGTCGA
TCCAACAACAAGTTGTCCAACTGGGCAAAGGGTATGGGAAAATGAGAAAGGTAAATAGAGCAATG
TTCTGCTGAACCCCACCCCATAATCTGATCTAATCTCATAAGTTCAGGCAGTAATAAACCCAACA
GGGAGTTTCCACGCACGATCCCACGGCTGACTGGTTGGTTGTTCCTGTGCCACTTCCTTCCATTC
ATCATGTAAGCATCTAAAGGTTGTAGCAATGCTGTCTTAATTGATCAAGCGTATCTGGCCGGGTA
AAGGCTGTCCCCCCAACAATAGAAATAGTGCCATACCTACTAAGC
Found at i:727344 original size:18 final size:18
Alignment explanation
Indices: 727321--727357 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
727311 GGCCCTTTAT
727321 ATCTTTCCTGGGCTACTG
1 ATCTTTCCTGGGCTACTG
*
727339 ATCTTTCCTTGGCTACTG
1 ATCTTTCCTGGGCTACTG
727357 A
1 A
727358 ACCTTTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.41
Consensus pattern (18 bp):
ATCTTTCCTGGGCTACTG
Left flanking sequence: Indices 726821 -- 727320
TCTAATAGGCAGTTCATAAGGCAAGCCCCGCTCCTCGAGCCTCAAGTGGCTGGAATGAAGTAGGC
ATTGACGATAGCCCGGGCAGTTCATGAGGCAAGCCCCTTTAGAGAGCAAATGTCCTTTAGTGAGC
CAACCGCCTGCCTTTCCTTGAGCCTCTAGTGAGCCAACCGTGATATAATGGTGGCAAGCCCCGCC
CGCCTTGTTAGCCAACCTATTAATTTAATGAAGTAGGCAGTGACAATAGCCCACTTGGCAGTTCA
TGAGGCAAGCCCCTTTAGTAGGGCACCAACCCAGAATATTGTTAACGCAAGCTGGCACCCACCAT
TAGCTGTTCATGAGGCGGGTAACAGAAGGTCTATAAGCCTTAGAACAGAAGGGAACAGATGGGGC
TATCGTTCGTTATTATCCTGTTATTACGCTATATGGATATCGGTTAAAGCCCTACAATAAACCAC
TTACAAAAATTGATCTAGCTGTTACGCTCTGTAGAGGCCCTTTAT
Right flanking sequence: Indices 727358 -- 727857
ACCTTTAGTGAGAGGCACCCTAGTTATATTCTTTCCTTGTAGTTAATATAAGAATGAAACGCATA
GGAACGCTCAGATGACGGGCACTCGATGGATGACGGGCACTCAAAATATATCCTGTAGGCAAGCA
CGTATGAAGGCGAACGTATGATGGCGCGAACTTAAGTAGCAACGTCATAACAGCTCCAGGCGAGG
TTATATCCCACAGATGGAAGAGAACCTGTAAGTCTCCCCTCCCAGGTGTCAGGCGTAGGTCTCCC
CTCCCGGGTGAAAGAAGCACAGGTCAGTCTCCTCCTGCCACACTATAGATTATAGTATACATTAC
TTTGACTGTAAACCGAGTATAGTATACATCTCCTGCCCTACTCTACAACGAACGTCTTTCCTTCC
TTAGGTCTCCTATCAAAAAAAATGACGAAAGATTAATTCAATGGACTTTTATACCAAATTCAAAC
CGAGCAACCAATGATTTCTCCTCTGAGGGGAACTTTGTGGAAGAC
Found at i:731835 original size:16 final size:17
Alignment explanation
Indices: 731788--731862 Score: 73
Period size: 20 Copynumber: 4.1 Consensus size: 17
731778 AAACAAACAC
731788 GAATGAAGCCCCTGACG
1 GAATGAAGCCCCTGACG
731805 GAATGGCAAAGCCCCTGACG
1 GAAT-G--AAGCCCCTGACG
731825 GAATG-AGCCCCTGTCCGACG
1 GAATGAAGCCCC--T--GACG
731845 GAATG-AGCCCCTGACG
1 GAATGAAGCCCCTGACG
731861 GA
1 GA
731863 CGCTATGACG
Statistics
Matches: 51, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
16 12 0.24
17 4 0.08
18 3 0.06
19 1 0.02
20 31 0.61
ACGTcount: A:0.27, C:0.31, G:0.31, T:0.12
Consensus pattern (17 bp):
GAATGAAGCCCCTGACG
Left flanking sequence: Indices 731288 -- 731787
GTTTCCTTCTCCTCTTCCTCAATTTGCAAGGCTGTGTCCACTGAAGCAGCAGCAGCTAACATGGT
TATGGTTACAGGAATGGAAAACAACCCAACCAACTCACGGTCTTTAACCATTAGTCCATACCTTT
CAGTCTCAGTCCTTCGGTCTCTAACCATAATCCCCGGCCCTGCCTGTTAAAGTCGCCTTCCCCAG
CCCCTAATTCCCCATATGGCAGTCGCTTTCCCCGGGTTGAGTGGCAGTCTTCTGTACGTAATTCC
CATGGCCCCGGATAATTGGATTCAGTTATGGCCGACAAACCATCCCTAGTTACTGTATATTCTGC
AACTCCAGAATCCGTTACGGCATTCTAGGATTATCAACGAATAGATAGCTTGGTCTCCCATAATA
CAACTGGTAGTCCTGTGCTGGTCCTTGGCCGACTGGAAACTAGACCCTGCATGCAGGCGAAAGTA
GTTTCGGCGGGTGGATACAAAGGAACAAGGTGATGAAACAAACAC
Right flanking sequence: Indices 731863 -- 732362
CGCTATGACGGTTCAATGGCTATGGCTCTCAGTCTTTCCTCAGTTCATGAGCTTTCAAACAACGG
TTCATGCGCACACATACGCCCACATAGCTACGATCACCGCACACAAGGCAGTGGTAAAGTCTATA
GGGTAAAGTCTATAGTTCGTTAATCTCCTTCCCGGATTCTCTACCCCTCTTCCCAGGATTCTCTA
CCTCTCCTCGCGATCTCGAGTTCTTTCAACATCTCGAGTTCACGAACACTACGATTAATGTGGCA
CCTATTAGAGTCAGGCAGTGGGAATAAAGAATCTCCTTCCTTCCATCACCGAGTGCATTTCCTTA
GGAATAACGGTAGGAATAACGGTTCATGAGGCAGTGGGAGAGTCCTCCAAGGTACTTCACCACCA
CCCCTTACTCTTCCAAAGAGATACCCATCCTGATGGCTTGCTTCAGGAATTCAGAAGTGTATTCT
TGTACACCTTCTCCCTATTCTAGCCGAAGGTACTGCCATTTCTTG
Found at i:731870 original size:20 final size:20
Alignment explanation
Indices: 731821--731870 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
731811 CAAAGCCCCT
* *
731821 GACGGAATGAGCCCCTGTCC
1 GACGCAATGAGCCCCTGACC
* *
731841 GACGGAATGAGCCCCTGACG
1 GACGCAATGAGCCCCTGACC
*
731861 GACGCTATGA
1 GACGCAATGA
731871 CGGTTCAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.30, G:0.32, T:0.14
Consensus pattern (20 bp):
GACGCAATGAGCCCCTGACC
Left flanking sequence: Indices 731321 -- 731820
GTGTCCACTGAAGCAGCAGCAGCTAACATGGTTATGGTTACAGGAATGGAAAACAACCCAACCAA
CTCACGGTCTTTAACCATTAGTCCATACCTTTCAGTCTCAGTCCTTCGGTCTCTAACCATAATCC
CCGGCCCTGCCTGTTAAAGTCGCCTTCCCCAGCCCCTAATTCCCCATATGGCAGTCGCTTTCCCC
GGGTTGAGTGGCAGTCTTCTGTACGTAATTCCCATGGCCCCGGATAATTGGATTCAGTTATGGCC
GACAAACCATCCCTAGTTACTGTATATTCTGCAACTCCAGAATCCGTTACGGCATTCTAGGATTA
TCAACGAATAGATAGCTTGGTCTCCCATAATACAACTGGTAGTCCTGTGCTGGTCCTTGGCCGAC
TGGAAACTAGACCCTGCATGCAGGCGAAAGTAGTTTCGGCGGGTGGATACAAAGGAACAAGGTGA
TGAAACAAACACGAATGAAGCCCCTGACGGAATGGCAAAGCCCCT
Right flanking sequence: Indices 731871 -- 732370
CGGTTCAATGGCTATGGCTCTCAGTCTTTCCTCAGTTCATGAGCTTTCAAACAACGGTTCATGCG
CACACATACGCCCACATAGCTACGATCACCGCACACAAGGCAGTGGTAAAGTCTATAGGGTAAAG
TCTATAGTTCGTTAATCTCCTTCCCGGATTCTCTACCCCTCTTCCCAGGATTCTCTACCTCTCCT
CGCGATCTCGAGTTCTTTCAACATCTCGAGTTCACGAACACTACGATTAATGTGGCACCTATTAG
AGTCAGGCAGTGGGAATAAAGAATCTCCTTCCTTCCATCACCGAGTGCATTTCCTTAGGAATAAC
GGTAGGAATAACGGTTCATGAGGCAGTGGGAGAGTCCTCCAAGGTACTTCACCACCACCCCTTAC
TCTTCCAAAGAGATACCCATCCTGATGGCTTGCTTCAGGAATTCAGAAGTGTATTCTTGTACACC
TTCTCCCTATTCTAGCCGAAGGTACTGCCATTTCTTGAGCTGCTC
Found at i:731999 original size:14 final size:14
Alignment explanation
Indices: 731980--732007 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
731970 ACAAGGCAGT
731980 GGTAAAGTCTATAG
1 GGTAAAGTCTATAG
731994 GGTAAAGTCTATAG
1 GGTAAAGTCTATAG
732008 TTCGTTAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
GGTAAAGTCTATAG
Left flanking sequence: Indices 731480 -- 731979
CAGCCCCTAATTCCCCATATGGCAGTCGCTTTCCCCGGGTTGAGTGGCAGTCTTCTGTACGTAAT
TCCCATGGCCCCGGATAATTGGATTCAGTTATGGCCGACAAACCATCCCTAGTTACTGTATATTC
TGCAACTCCAGAATCCGTTACGGCATTCTAGGATTATCAACGAATAGATAGCTTGGTCTCCCATA
ATACAACTGGTAGTCCTGTGCTGGTCCTTGGCCGACTGGAAACTAGACCCTGCATGCAGGCGAAA
GTAGTTTCGGCGGGTGGATACAAAGGAACAAGGTGATGAAACAAACACGAATGAAGCCCCTGACG
GAATGGCAAAGCCCCTGACGGAATGAGCCCCTGTCCGACGGAATGAGCCCCTGACGGACGCTATG
ACGGTTCAATGGCTATGGCTCTCAGTCTTTCCTCAGTTCATGAGCTTTCAAACAACGGTTCATGC
GCACACATACGCCCACATAGCTACGATCACCGCACACAAGGCAGT
Right flanking sequence: Indices 732008 -- 732507
TTCGTTAATCTCCTTCCCGGATTCTCTACCCCTCTTCCCAGGATTCTCTACCTCTCCTCGCGATC
TCGAGTTCTTTCAACATCTCGAGTTCACGAACACTACGATTAATGTGGCACCTATTAGAGTCAGG
CAGTGGGAATAAAGAATCTCCTTCCTTCCATCACCGAGTGCATTTCCTTAGGAATAACGGTAGGA
ATAACGGTTCATGAGGCAGTGGGAGAGTCCTCCAAGGTACTTCACCACCACCCCTTACTCTTCCA
AAGAGATACCCATCCTGATGGCTTGCTTCAGGAATTCAGAAGTGTATTCTTGTACACCTTCTCCC
TATTCTAGCCGAAGGTACTGCCATTTCTTGAGCTGCTCCTCTCCATAGCCTATTGGATAGAATTG
CGATTTAAACAATGTCTTGAAGTCCTCCCATTTTGTAACCATGGGCTTATTGCCTGGGGGTGGGC
AGGACCTACCTTACCGACCGACTGCCTGAAACCCTTCCAACCAAC
Found at i:732203 original size:12 final size:12
Alignment explanation
Indices: 732186--732210 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
732176 TGCATTTCCT
732186 TAGGAATAACGG
1 TAGGAATAACGG
732198 TAGGAATAACGG
1 TAGGAATAACGG
732210 T
1 T
732211 TCATGAGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (12 bp):
TAGGAATAACGG
Left flanking sequence: Indices 731686 -- 732185
AGTCCTGTGCTGGTCCTTGGCCGACTGGAAACTAGACCCTGCATGCAGGCGAAAGTAGTTTCGGC
GGGTGGATACAAAGGAACAAGGTGATGAAACAAACACGAATGAAGCCCCTGACGGAATGGCAAAG
CCCCTGACGGAATGAGCCCCTGTCCGACGGAATGAGCCCCTGACGGACGCTATGACGGTTCAATG
GCTATGGCTCTCAGTCTTTCCTCAGTTCATGAGCTTTCAAACAACGGTTCATGCGCACACATACG
CCCACATAGCTACGATCACCGCACACAAGGCAGTGGTAAAGTCTATAGGGTAAAGTCTATAGTTC
GTTAATCTCCTTCCCGGATTCTCTACCCCTCTTCCCAGGATTCTCTACCTCTCCTCGCGATCTCG
AGTTCTTTCAACATCTCGAGTTCACGAACACTACGATTAATGTGGCACCTATTAGAGTCAGGCAG
TGGGAATAAAGAATCTCCTTCCTTCCATCACCGAGTGCATTTCCT
Right flanking sequence: Indices 732211 -- 732710
TCATGAGGCAGTGGGAGAGTCCTCCAAGGTACTTCACCACCACCCCTTACTCTTCCAAAGAGATA
CCCATCCTGATGGCTTGCTTCAGGAATTCAGAAGTGTATTCTTGTACACCTTCTCCCTATTCTAG
CCGAAGGTACTGCCATTTCTTGAGCTGCTCCTCTCCATAGCCTATTGGATAGAATTGCGATTTAA
ACAATGTCTTGAAGTCCTCCCATTTTGTAACCATGGGCTTATTGCCTGGGGGTGGGCAGGACCTA
CCTTACCGACCGACTGCCTGAAACCCTTCCAACCAACTGACCTTTCCCTCCCTCGCCCATATGAA
TGAAGCGTGAAACCCTTTCATCAATTTCTGAACCACTGCTCCGAATGAAACGGGTTTGGGTGGGC
TTGGAAGAGCCAGGGAATGTGAAACAGCGGACAACTGAACCTGGTTCTAAAGGCATGCTTTCTCC
GATGCATTTGATTAGCCACGCAACGCCCCTATTTAACTAAACTAT
Found at i:737974 original size:27 final size:26
Alignment explanation
Indices: 737944--738006 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
737934 GGTAACAGTT
*
737944 GTATTCCCA-CAGGTTGTTGTGAGCAGA
1 GTATTCCCACCAAG-TGTT-TGAGCAGA
*
737971 GTATTCCAAGCCAAGTGTTTGAGCAGA
1 GTATTCCCA-CCAAGTGTTTGAGCAGA
737998 GTATTCCCA
1 GTATTCCCA
738007 TCCCAGGTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 24 0.77
28 4 0.13
29 3 0.10
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
GTATTCCCACCAAGTGTTTGAGCAGA
Left flanking sequence: Indices 737444 -- 737943
GCAATATGATCCCATCAACCGAGCAGGGCATCTAAGGTCTGATATTCGTGCCTCCAAAGACCTAA
CCTAATGGGTCCTGTCAAAATCTAATTATTGTAGGTGTATGGTATCAAAGGTAAGTGCTTTTAAG
ACTGTCCCCTCCCCGACTGGTCTTCCTGGTCTCATTCCTGGGTTGGTAAGTAACTAAATCCATCA
TTGTAGGGTTCCAGCAGTAATCATAGAAGGGTAAGGCACTAATTGATCAATCCATGCCATCCCCA
ATCTGTAGCTCCAAAGGTCTTCTAGTAGTGCCTCCAAAGAGCTCATGGTCTAGGGCTTAAACATA
TAAGGTATATCTGGGAGGTGGGTGAGTGTCTAAAGCAAGGTAAGTAATAGCAGTGCCTCCAAAGA
CCTCATGTTCTAGGGCTGAAACGTAGAAGGTATTGTCAGTAGAGCTACTCTCGTGTTCTTGGCTG
GCTGAATCCAAATGAAGTTGGTGGGCAGGAACCCAGGTAACAGTT
Right flanking sequence: Indices 738007 -- 738506
TCCCAGGTTCGCGAACCAAGCCAAGTAGGTGAGCAGGAGCCAAGTTGGTGAAATAGGCCCGCCCA
GTGGGTGAGCAGGAGTAGGCCCGGCCAAGTAGGTGAGCAGGTGGGAGTATAGCTGGTAAAGTCCT
GAATGTCCAGTCCAGTCCTGTTGTTCGTTGTCCCCAGGGCTAAGGTTGGCAGGGGGTTACGGGGG
CCCCTGTAAGTTCGTGTAGGTGGGAGGGGGGCAGTTGGGAACATCCATCAGTTGGGAACGCTGGG
GTCTATGGATAAATCAAGTTCATCAAGTAAGAAGAATCAAGCAACAACCAACCAACACTCATCAA
CTAAGAGGTAACAGGTTTGGTATAATCACGTCTATAAGCAACTAAGTTAAGCACAACCTAGCTGT
TATGTCTTGTGTTATAATTGTTGGGCAGGACCCCCGCATAGGCCCAGGTAACATTCGTAGGCCCA
GCCAAGTTAGCAGAGTATTCCCACCCAGGTGAGCGAGCCCAGCCT
Found at i:738090 original size:27 final size:28
Alignment explanation
Indices: 738060--738112 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
738050 GTTGGTGAAA
* *
738060 TAGGCCC-GCCCAGTGGGTGAGCAGGAG
1 TAGGCCCGGCCAAGTAGGTGAGCAGGAG
738087 TAGGCCCGGCCAAGTAGGTGAGCAGG
1 TAGGCCCGGCCAAGTAGGTGAGCAGG
738113 TGGGAGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.21, C:0.25, G:0.43, T:0.11
Consensus pattern (28 bp):
TAGGCCCGGCCAAGTAGGTGAGCAGGAG
Left flanking sequence: Indices 737560 -- 738059
TAAGTGCTTTTAAGACTGTCCCCTCCCCGACTGGTCTTCCTGGTCTCATTCCTGGGTTGGTAAGT
AACTAAATCCATCATTGTAGGGTTCCAGCAGTAATCATAGAAGGGTAAGGCACTAATTGATCAAT
CCATGCCATCCCCAATCTGTAGCTCCAAAGGTCTTCTAGTAGTGCCTCCAAAGAGCTCATGGTCT
AGGGCTTAAACATATAAGGTATATCTGGGAGGTGGGTGAGTGTCTAAAGCAAGGTAAGTAATAGC
AGTGCCTCCAAAGACCTCATGTTCTAGGGCTGAAACGTAGAAGGTATTGTCAGTAGAGCTACTCT
CGTGTTCTTGGCTGGCTGAATCCAAATGAAGTTGGTGGGCAGGAACCCAGGTAACAGTTGTATTC
CCACAGGTTGTTGTGAGCAGAGTATTCCAAGCCAAGTGTTTGAGCAGAGTATTCCCATCCCAGGT
TCGCGAACCAAGCCAAGTAGGTGAGCAGGAGCCAAGTTGGTGAAA
Right flanking sequence: Indices 738113 -- 738612
TGGGAGTATAGCTGGTAAAGTCCTGAATGTCCAGTCCAGTCCTGTTGTTCGTTGTCCCCAGGGCT
AAGGTTGGCAGGGGGTTACGGGGGCCCCTGTAAGTTCGTGTAGGTGGGAGGGGGGCAGTTGGGAA
CATCCATCAGTTGGGAACGCTGGGGTCTATGGATAAATCAAGTTCATCAAGTAAGAAGAATCAAG
CAACAACCAACCAACACTCATCAACTAAGAGGTAACAGGTTTGGTATAATCACGTCTATAAGCAA
CTAAGTTAAGCACAACCTAGCTGTTATGTCTTGTGTTATAATTGTTGGGCAGGACCCCCGCATAG
GCCCAGGTAACATTCGTAGGCCCAGCCAAGTTAGCAGAGTATTCCCACCCAGGTGAGCGAGCCCA
GCCTATTGGGTGAGCCCAGCCAAGTAGGAACATGAGCCTTATTTACTTTAGTACTTGCCTTTGTT
TCCTGCAGAGCCTAGAATCGAGGAAGGCCTAGTCCCTCCTACCAC
Found at i:742441 original size:20 final size:20
Alignment explanation
Indices: 742396--742442 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
742386 CCTGCGCCGG
*
742396 TCAACCCGGTAAGGTCCTTA
1 TCAACCCGGTAAGGTCCTGA
*
742416 TAAACCCGGTCAA-GTCCTGA
1 TCAACCCGGT-AAGGTCCTGA
742436 TCAACCC
1 TCAACCC
742443 CCCTTATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (20 bp):
TCAACCCGGTAAGGTCCTGA
Left flanking sequence: Indices 741896 -- 742395
GTGGTTCAAACAAACTATGGTACCTGCTTAGCTTAGCCCGAATGCCCCCACTGATCATTGGTTAG
ATCCGATCCCCTCTATTGAATGGGGGCCCGGCTCGTTCCTCTCCCGTTGGTCGAGTCACTTAACG
TACCTCACTTTTTCCGGATGATGCATCTCCACGAAGATCCACTATTTTTAGACCCGCACAATCCC
AGAAGATCGCCTCCTCGGGGAGTAGGTCTACGATCTTGTCTTACTATTTGTTGGGGGTGGGGCAG
TTGCTCGAGCTAGCTTAAGAACGTTGTTTATGGCTGCTCAATAATAAGGTCGGCCTGAGCGGACA
GGCAGGCGTCTACTCTACCAAATCGTTACCTTCGCATAGCTCAGGTAAGGTCACTTACGCATAGC
TCAGGTAAGGTCATCCCCTATATTTATTCCCCTCAATCGTTATAGTTCGGGAAGATATGCGCCCT
TTATTTCTTTCCCTCAAAGAGCTAGAAGGTAAGGTCCTGCGCCGG
Right flanking sequence: Indices 742443 -- 742942
CCCTTATCTAACGGGTCCTTTATTTCAGGTCAATCCTTCGAAGACTTGTCCTGATTAACCCTTAT
TGCTATTCTTTCTATTTTCCCCCCCATCAGCGATAATATATGCTTTTCAGATCAATACGGGGCGT
CTCAAAAGTAAGCAGGCCTTGAAAGGAAATATTATTTGAGGTCCGATTCATACCCTCTTATTTAA
TGAAGAAGGGCGAAGTCAACCCTCCATCTCCTTATAAATACTCTTTTTTACCCGAGTTTGGCGAA
GTCAACCCAGAAAGGTCGGTCCTTGCCCGATGCGGGCAAGCAATTCCCTGCAATGCCCTCTTTAT
CGAAGTCTTTACCTAACGACTGATACCTATTCGTTAGCTAAGGGGGTGGATAAGGTCGTTTGTCA
CAAGGGCCTTGCTATGACTTATGTAACGAAATGTACACCTAACGTCTTAATTTCATTCGGTAGCT
AAGTGGGATAGAAGGAGATATCTGTTTTAGGCCCCGCTACCTCAC
Found at i:743938 original size:13 final size:12
Alignment explanation
Indices: 743920--743980 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 12
743910 TGGAGTAAGG
743920 AGGCTAGGAGGTA
1 AGGCTAGGAGG-A
743933 AGGCTAGGAGGA
1 AGGCTAGGAGGA
*
743945 AGGGGGC-GGGATGGA
1 A---GGCTAGGA-GGA
743960 AGGCTAGGAGGGA
1 AGGCTAGGA-GGA
743973 AGGCTAGG
1 AGGCTAGG
743981 GCTAGGAAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
12 5 0.12
13 25 0.62
14 3 0.08
15 7 0.17
ACGTcount: A:0.28, C:0.08, G:0.54, T:0.10
Consensus pattern (12 bp):
AGGCTAGGAGGA
Left flanking sequence: Indices 743420 -- 743919
TCAAGTTGAAGGGAAGAAGCTCCCGAACGAGCGTTTCCCACTTGATTCCAATTTCATCGCGAACG
AAACGGGAAACATGAGAATCACCGGAATCAGAGCTCCTCCTATCAACAGCCGAATAAAATGTACG
CTCAGGGCCCCATCGGGATGAATCGGGTCAAGCTCAAGGTCAGCAGGCAAGGTCAAGATCGATCG
GTGTCCCTAGCCGTTATCCCCCGTCGGAAAGAGATAAAGAGAAATAAAAGAAAAGAAGGCTGATA
AAGCAGCGAACGAAGAAAAGAGAGAAGGAGGGAGCACCAGAGGGAGGGGGAAGGGGGACCTTTAA
TAAAGTTTTGGCAAATTCATCTTTTTTAGGTACTTTAAGTGATATCAGCTAGGACAGGACCTTAC
CTCATCAAACAAGCTAGCATGCCTCATCAAACCACTTCATCTGCTATTAAATTTCTCCTTTGTTT
TGCTGGTTTCACGACTTCAGCTAGGGGTGCTAGGATGGAGTAAGG
Right flanking sequence: Indices 743981 -- 744480
GCTAGGAAGAAGGGTCGGGATGGAATGCTAGGAGGGAAGGGGGATGGGTGCGGATATCTAGGTTC
ATGAGCTGCATGTTTCAATTCAATCTGGATCAAGGTTGCATGCTTTGGCGAATCAATATGGGAGC
TGGGGAATCATTATATGGGTTCACGATCTGGCTTCGGCAATAGATGGGTTGTGTGATACTGATCG
ATGGGTTTTTAGCGCCTATCTATCATGCCTCCGGGTTCAAGAACTCGCATTTTTCTTGAGCCAAA
TAGCTGATTCCCAGCAAGTTCTGAATGCTAATTCATTCCATAGCTTGCTTGCCCGACCTAAGAAG
TACGAGTTCCTAGTGTGTGCGCCCGCCCGAAGTACGGGGAAAACAAGGTGGCCGCTGCTTTTCTG
CATCGTAATTACGTATAGAAAAGCTAATAACAAAACTAAGGCGTGTAACTTGTAAGAAGAGGTTT
CAGGAGTGTATCCAGTGGTTGTGTGGAAAGGCAGTAAGAAAGTAA
Found at i:743965 original size:40 final size:43
Alignment explanation
Indices: 743920--744020 Score: 136
Period size: 45 Copynumber: 2.4 Consensus size: 43
743910 TGGAGTAAGG
*
743920 AGGCTAGGAGGTAAGGCTA-GG-AGGAAG-GGGGCGGGATGGA
1 AGGCTAGGAGGGAAGGCTAGGGCAGGAAGAGGGGCGGGATGGA
*
743960 AGGCTAGGAGGGAAGGCTAGGGCTAGGAAGAAGGGTCGGGATGGA
1 AGGCTAGGAGGGAAGGCTAGGGC-AGGAAG-AGGGGCGGGATGGA
*
744005 ATGCTAGGAGGGAAGG
1 AGGCTAGGAGGGAAGG
744021 GGGATGGGTG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
40 18 0.34
41 2 0.04
43 6 0.11
45 27 0.51
ACGTcount: A:0.29, C:0.08, G:0.52, T:0.11
Consensus pattern (43 bp):
AGGCTAGGAGGGAAGGCTAGGGCAGGAAGAGGGGCGGGATGGA
Left flanking sequence: Indices 743420 -- 743919
TCAAGTTGAAGGGAAGAAGCTCCCGAACGAGCGTTTCCCACTTGATTCCAATTTCATCGCGAACG
AAACGGGAAACATGAGAATCACCGGAATCAGAGCTCCTCCTATCAACAGCCGAATAAAATGTACG
CTCAGGGCCCCATCGGGATGAATCGGGTCAAGCTCAAGGTCAGCAGGCAAGGTCAAGATCGATCG
GTGTCCCTAGCCGTTATCCCCCGTCGGAAAGAGATAAAGAGAAATAAAAGAAAAGAAGGCTGATA
AAGCAGCGAACGAAGAAAAGAGAGAAGGAGGGAGCACCAGAGGGAGGGGGAAGGGGGACCTTTAA
TAAAGTTTTGGCAAATTCATCTTTTTTAGGTACTTTAAGTGATATCAGCTAGGACAGGACCTTAC
CTCATCAAACAAGCTAGCATGCCTCATCAAACCACTTCATCTGCTATTAAATTTCTCCTTTGTTT
TGCTGGTTTCACGACTTCAGCTAGGGGTGCTAGGATGGAGTAAGG
Right flanking sequence: Indices 744021 -- 744520
GGGATGGGTGCGGATATCTAGGTTCATGAGCTGCATGTTTCAATTCAATCTGGATCAAGGTTGCA
TGCTTTGGCGAATCAATATGGGAGCTGGGGAATCATTATATGGGTTCACGATCTGGCTTCGGCAA
TAGATGGGTTGTGTGATACTGATCGATGGGTTTTTAGCGCCTATCTATCATGCCTCCGGGTTCAA
GAACTCGCATTTTTCTTGAGCCAAATAGCTGATTCCCAGCAAGTTCTGAATGCTAATTCATTCCA
TAGCTTGCTTGCCCGACCTAAGAAGTACGAGTTCCTAGTGTGTGCGCCCGCCCGAAGTACGGGGA
AAACAAGGTGGCCGCTGCTTTTCTGCATCGTAATTACGTATAGAAAAGCTAATAACAAAACTAAG
GCGTGTAACTTGTAAGAAGAGGTTTCAGGAGTGTATCCAGTGGTTGTGTGGAAAGGCAGTAAGAA
AGTAAGGGTTGTGTCATGCCGTCCGGAAAGATAAGTTTATAGCAG
Found at i:744011 original size:45 final size:46
Alignment explanation
Indices: 743934--744020 Score: 140
Period size: 45 Copynumber: 1.9 Consensus size: 46
743924 TAGGAGGTAA
*
743934 GGCTAGGAGGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGGCTAG
1 GGCTAGGAAGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGGCTAG
* *
743980 GGCTAGGAAGAA-GGGTCGGGATGGAATGCTAGGAGGGAAGG
1 GGCTAGGAAGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGG
744021 GGGATGGGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
45 27 0.71
46 11 0.29
ACGTcount: A:0.28, C:0.08, G:0.54, T:0.10
Consensus pattern (46 bp):
GGCTAGGAAGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGGCTAG
Left flanking sequence: Indices 743434 -- 743933
AGAAGCTCCCGAACGAGCGTTTCCCACTTGATTCCAATTTCATCGCGAACGAAACGGGAAACATG
AGAATCACCGGAATCAGAGCTCCTCCTATCAACAGCCGAATAAAATGTACGCTCAGGGCCCCATC
GGGATGAATCGGGTCAAGCTCAAGGTCAGCAGGCAAGGTCAAGATCGATCGGTGTCCCTAGCCGT
TATCCCCCGTCGGAAAGAGATAAAGAGAAATAAAAGAAAAGAAGGCTGATAAAGCAGCGAACGAA
GAAAAGAGAGAAGGAGGGAGCACCAGAGGGAGGGGGAAGGGGGACCTTTAATAAAGTTTTGGCAA
ATTCATCTTTTTTAGGTACTTTAAGTGATATCAGCTAGGACAGGACCTTACCTCATCAAACAAGC
TAGCATGCCTCATCAAACCACTTCATCTGCTATTAAATTTCTCCTTTGTTTTGCTGGTTTCACGA
CTTCAGCTAGGGGTGCTAGGATGGAGTAAGGAGGCTAGGAGGTAA
Right flanking sequence: Indices 744021 -- 744520
GGGATGGGTGCGGATATCTAGGTTCATGAGCTGCATGTTTCAATTCAATCTGGATCAAGGTTGCA
TGCTTTGGCGAATCAATATGGGAGCTGGGGAATCATTATATGGGTTCACGATCTGGCTTCGGCAA
TAGATGGGTTGTGTGATACTGATCGATGGGTTTTTAGCGCCTATCTATCATGCCTCCGGGTTCAA
GAACTCGCATTTTTCTTGAGCCAAATAGCTGATTCCCAGCAAGTTCTGAATGCTAATTCATTCCA
TAGCTTGCTTGCCCGACCTAAGAAGTACGAGTTCCTAGTGTGTGCGCCCGCCCGAAGTACGGGGA
AAACAAGGTGGCCGCTGCTTTTCTGCATCGTAATTACGTATAGAAAAGCTAATAACAAAACTAAG
GCGTGTAACTTGTAAGAAGAGGTTTCAGGAGTGTATCCAGTGGTTGTGTGGAAAGGCAGTAAGAA
AGTAAGGGTTGTGTCATGCCGTCCGGAAAGATAAGTTTATAGCAG
Found at i:745383 original size:51 final size:53
Alignment explanation
Indices: 745287--745386 Score: 125
Period size: 51 Copynumber: 1.9 Consensus size: 53
745277 AGACCAGAAC
* * *
745287 AGACCAGACGGGAACGAAAGAAACATGCCTCTAAAGAATACCCCGCCCCTGAA
1 AGACCAGAAGGGAACGAAAGAAACATGCCTCTAAAAAACACCCCGCCCCTGAA
* *
745340 AGACCAGAAGGG-ACGAAA-CAACATGCCTC-AAAAAAGCATCCCGCCCC
1 AGACCAGAAGGGAACGAAAGAAACATGCCTCTAAAAAA-CACCCCGCCCC
745387 AGGAATTTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 5 0.12
51 19 0.46
52 6 0.15
53 11 0.27
ACGTcount: A:0.40, C:0.32, G:0.20, T:0.08
Consensus pattern (53 bp):
AGACCAGAAGGGAACGAAAGAAACATGCCTCTAAAAAACACCCCGCCCCTGAA
Left flanking sequence: Indices 744787 -- 745286
CCACGCACCCAAGCAACATAAAGAAGCCCATCCAATAACTAAGTGAAGTGAGTGATCTCTTCTCT
ATAAACAGCAAAGCAACGTAGCGGAGGGAGGTCTTTACTGCCTTTCTTCTCTCTTTATCCACAGC
CAACACTTATGCTGAGGGAGTGAACTACCTGTATTCTATGTGGATTGGATCGGATGGAGGAGAGC
TGGCTTGGGATTAATCGGGAGAACGAGAAGAGACTAGAGACTTTGCTAAACCACCTCCTTGCTAG
AGAACCTATCTCAACATGCCAACCCTAGGAGGAGAAAGCCCCAAGCAAGCCCCCTCAGAAGATAA
TGGGACACGCCCCCTAGGAAGGGAACGGGACAAGCAAGCTCCCTCGGAGGCGCGATAGCGGGACA
GGAAAAAGCCCTTCCCTCGGAAGAGAAAGTGGGACAGGCCCCCTCGGAATAAGAATAGCTGGATC
ACACCCCCTCGAAGGAAGAATACCCCGCCCCAGGAAGACCAGAAC
Right flanking sequence: Indices 745387 -- 745886
AGGAATTTCTTTTAATGGCTGCTCTTACTGTACGAATTCAGAAGTCCATGCATGCTCCGTACGGG
GAGGAAGGGTACGCGAACTAGCTAGGGAAGGATTAGAACCCTACCAGTTATCATCGGTATGACAA
CCAGACTGATAACTAACAGCCAGGGAGGGATGACCAGCCCATAGTAGCTTAGGGATGATTACCAG
CCCAGCATCCTCGCGCATTCGAGTGCCATAACCCGTATATTATGTTGCTCTAATTGCGTTTTATC
TACCCCATTACAGTCGGCTAAGGGATTACCTTAACTAGGCGGTTCACACCTTACGTCCGTCCGGG
ATCTTGATCTTGCGATTCTTTCGTGCGTTCTGATCTTGCCTTAGTGGCTATTTTCATAAGAATGT
CGCCGATGGACTGAGCGAGTTGGACCAGAGTTTACCCCCATTTGACCTTTCATCTGTTTACCATT
ACCCGCATAAGCACTGGAGGGAACCTTGCATGTTGTGCATTCCTA
Found at i:772591 original size:12 final size:12
Alignment explanation
Indices: 772574--772598 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
772564 GGGAACATAT
772574 AAGTTGGGGGAC
1 AAGTTGGGGGAC
772586 AAGTTGGGGGAC
1 AAGTTGGGGGAC
772598 A
1 A
772599 GAAAGAGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.48, T:0.16
Consensus pattern (12 bp):
AAGTTGGGGGAC
Left flanking sequence: Indices 772074 -- 772573
TACACAAATAGTGATTTTCCACATTCCCCCCTCGGCTTTGAAACACCCAATTTTTATGGATTTCA
TACTGCTTTCAGCGCTGCTGCCAAGTCTGGTATTTCCGCATTATCGGAGAGAGGGCCGGACTATT
AAACGTCTCATTTTTCCGGCGCAATTATGTATGTCTACTTCCCTACCTATGAATTGGGAGCCCCT
TCCCTAGCTATAGATGGAATAAGATAAAGTTACTTCGAAGGAGTCGACACCACACCCACCTTTTG
ACTAGGGGCCTAATAAGAACAGCATGCGGAGTGAGGTTTTTCCAGGAATTACTGCATCATCCGGA
GAGCGACCAATGAGTAACTAGGGCAAGCATATAGGACTAGAAATCCGTTTTTCACCCAGGCAAAT
TCTATAGATTGAGTTATCTAGTTGATGGTTGGCCGGAGTACAGAGTTAAGACCTTAGGTTTTAGC
TCAAGTTCCCGCGCATTAAGCTGAGTGGGGTGGGTGGGAACATAT
Right flanking sequence: Indices 772599 -- 773098
GAAAGAGTTGCCTTTATATCTGCCACTTTACGAAGCTAAAAATCTTTGCGCCGGGTTACTCGCCT
CATCTCCGGTAGCTGGGGCCTACTTGATTAATGAACGGATTCATTAATGAACGAAACAGGCGGGC
ACTTCTATAACTGAATGAACGGGCTTTTCGGGAGTTCCCGCAAGCTTACAATAGTTTCTCTAGTA
AGAGTAAGCGGGCCACCTTATATAAAGTAATTCGGTCGGTTATTTCTATATTCTATTCGTCAGGC
TCCTGTCCAAAAGCTGTTTTAAGTAAGGGCAGCCCTTCTCCATTAGTGTCCCATGTTGGAGCGAG
ATAGATTGTTGGTGCATGCTATAGAAGTAGCCAGCCGGGGAATAAGCACCCACCGAATGAATGGA
TCAACGGTCGGTCGATAACTACTTTTTTTTACGGATCAATGGACAGAAAGACCAAACATAAAACT
ACTGGGGTTGGTGCGGCCTGGCCGGGGAAAGGCCGATAGATCTAG
Found at i:778856 original size:35 final size:35
Alignment explanation
Indices: 778810--778879 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
778800 CCCTTTCCAG
778810 AGCCTTTTATGCGATTATGAACGGAACCATACTGA
1 AGCCTTTTATGCGATTATGAACGGAACCATACTGA
778845 AGCCTTTTATGCGATTATGAACGGAACCATACTGA
1 AGCCTTTTATGCGATTATGAACGGAACCATACTGA
778880 CCCCTCTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (35 bp):
AGCCTTTTATGCGATTATGAACGGAACCATACTGA
Left flanking sequence: Indices 778310 -- 778809
TCCTCACATATAGTGAGCGCTACGGGGATAGCGCTATAGTTATAAACACCTCCACTATGGAACAT
ATGACTCCTGGCTATCAGAACTTCGGCTAGGTTTATAAGAGAGGCCGGAATGATGGCAATGAGCA
GCTATTGACTGATCGATTCTTTCTGCCCTAGAACGAGAGTTCCGGATGAGATGTCGTCGTGAACG
GTGGTGGTTCGGAGAAAGAGAAACAAAGGAAGGAGTTCATAGCAGTGAGAGAGAAGGTCAGTTTA
TGATCTCAGCATCAGTGCTTCACGACCTAAGCAGGGAACCTGCGGCAGGATCGAATCCCCGTTAT
ACAACGGTGGGGTTCAGTCGTTCGTAACAAGGTAGTCGTAGGGAAACCTGCGGCTGGATCGAATC
CCCATTTATCTTGGGACCCATAAAAACGTCTTTAAAGCGCTGTCCTCCCTCAGCAGCTTCATCGG
CCACTTAAACAGGATTTTTTTTTCTATTCACTATACCCTTTCCAG
Right flanking sequence: Indices 778880 -- 779379
CCCCTCTCTTTGAACCTCGCTTTGAACTGACCCCTCGCTTTTCAAAGGGTGACCCCTCGCTTTGA
ACCATACTGAAAGGAGATTGATTGATTGAAAGGGACGCTAACGCTTTTTTCCTAAGCAACGACAG
CTATGACCACAGCGGCGACAAACCCTACGAAAGGAAGTTAACCTCCTTCGAATCCTATCAAACCC
TCTTTTTTTTTTCACTTCAAAATTACTCACCATATCTGGGTCATTGACTAAACTCGCCACGAGGG
GACCTTCAGCAAGCATTCTTCGAAGGATACGATCCCAGCCTTCAAGTCCCCTAATTTGTTGAATC
GGAACAGATGGGGGAAACAGACTAGAGAGCCTCCCTTGAATCTCACTTTTCTTGATTGATTCCTT
GAATTTTGCTATCACGTGAAAGGTCTTCCCATCCCCCTCAGACTGACAAGAAACAACGAGGCTGC
TGGCATTCAACGGACCCAACTTCCTCGACATTTCCCAATTCGACT
Found at i:779644 original size:24 final size:24
Alignment explanation
Indices: 779617--779671 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
779607 GCTGATCCAA
*
779617 ATGCTGATG-GAACTGTTGGGAGTC
1 ATGCTGATGAGAA-TGCTGGGAGTC
* *
779641 ATGCTGCTGAGAATGCTGGGAGTT
1 ATGCTGATGAGAATGCTGGGAGTC
779665 ATGCTGA
1 ATGCTGA
779672 GAATCTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.22, C:0.13, G:0.36, T:0.29
Consensus pattern (24 bp):
ATGCTGATGAGAATGCTGGGAGTC
Left flanking sequence: Indices 779117 -- 779616
ATTGACTAAACTCGCCACGAGGGGACCTTCAGCAAGCATTCTTCGAAGGATACGATCCCAGCCTT
CAAGTCCCCTAATTTGTTGAATCGGAACAGATGGGGGAAACAGACTAGAGAGCCTCCCTTGAATC
TCACTTTTCTTGATTGATTCCTTGAATTTTGCTATCACGTGAAAGGTCTTCCCATCCCCCTCAGA
CTGACAAGAAACAACGAGGCTGCTGGCATTCAACGGACCCAACTTCCTCGACATTTCCCAATTCG
ACTCTCCTGGTTATTATAATGCCGCTTTTGCTGGGACTACCACTTATGGGAATAATGCCCGTTAA
ATTGGTGTTGCTAGAAATTAGACTGGTAATGCTGGGAAGAATTATGCTTTGGTCCGGTTCTGCTT
TCGGTGAAACTGCTCCTTGGAATTAGGCTGCTTAGCCTGGTTATTTTCTTGTTCTCATTATGCCA
GGAATCCAAATGGTTATATTGGTCTTGATGGGGCTGCTGATCCAA
Right flanking sequence: Indices 779672 -- 780171
GAATCTTTATTCCCAATTGCATTATATAAGTTGTTAGGGTAATCGGTGCACCTCACACTGGGGAC
TACATCGTCCGTGCCCTCCGCTCTCTGCCTCGAATCCGCCTCTGATAACTCTGCTGCCGCTAATA
CGATGGCTCTGATCCGATGGTGCCTCTAATCCGCTCTAATACGCCGATCATAAAATCGGATGCGC
TAATTGACGAATGATGATCGACTCCGCTAATCGGCGATGGGCTTTTCGAATGCCTCTAATCCGAT
GGGATAGCTCTAATCCGATGACTCCGATCTGCTGATCCAATCCGCTAGGCTAATCCAATGGCCTC
CGCTAATCCAATGGGGGATGGGCTTATCAGCTGCTCTTATACACTTCCCCGGATGCTCAAATCCG
CTGACTCATTTACAATTTGAGGGGCCTAATCTCACAGGGGGGATACTCAACGGCTCCTACTCAAC
GGATTGGCACCGGCATTTGATGCTACTCGATCTGATACTTTATGA
Found at i:780250 original size:14 final size:15
Alignment explanation
Indices: 780218--780250 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
780208 ACTGGAGATG
780218 TACTCGATGCTGTGT
1 TACTCGATGCTGTGT
*
780233 TACTCTATGCTG-GT
1 TACTCGATGCTGTGT
780247 TACT
1 TACT
780251 GCTTTACTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.42
Consensus pattern (15 bp):
TACTCGATGCTGTGT
Left flanking sequence: Indices 779718 -- 780217
TGCACCTCACACTGGGGACTACATCGTCCGTGCCCTCCGCTCTCTGCCTCGAATCCGCCTCTGAT
AACTCTGCTGCCGCTAATACGATGGCTCTGATCCGATGGTGCCTCTAATCCGCTCTAATACGCCG
ATCATAAAATCGGATGCGCTAATTGACGAATGATGATCGACTCCGCTAATCGGCGATGGGCTTTT
CGAATGCCTCTAATCCGATGGGATAGCTCTAATCCGATGACTCCGATCTGCTGATCCAATCCGCT
AGGCTAATCCAATGGCCTCCGCTAATCCAATGGGGGATGGGCTTATCAGCTGCTCTTATACACTT
CCCCGGATGCTCAAATCCGCTGACTCATTTACAATTTGAGGGGCCTAATCTCACAGGGGGGATAC
TCAACGGCTCCTACTCAACGGATTGGCACCGGCATTTGATGCTACTCGATCTGATACTTTATGAT
GCTACTTGATGCTGTTGAGCACAATAGGAGATCCCACTGGAGATG
Right flanking sequence: Indices 780251 -- 780750
GCTTTACTCTATGCTGGCGATCCAAGAGGCGATGCTTGTACTCAATGGCTGCATGATTGTACTCA
ATGCTTGTATTCTCTCGATGACAGATGGTATATCGATGATGCTACTCCAGGGCTTGTACTCGATG
ATTGTGGTACCCGATGATGCTACTCGATGATGATGCTACTCAATGATGCTAATGTTATACTCGAT
CAGTCGATCAGTCATAGTTGCCGGTAGGGAGTCGGATACGATAGTCGATGTCGATTGGCGTTGGC
GAGTCAATAGCAATGGCGTTGGCAACGGCAGAGAACGAAACAACCTACCTGATTCAAAGCTTACC
GAGACAGATCAATCGTTCCTACAGATACTCCACATTCCCCATTACCCATTACCCTTTCATTCATC
CCCTTTAAATCTTCCCCTTTCACTTAACGATACGATACACGGGTTACACAATGAGGTTATCACAA
TGGAGGTTAGGTTACGCGATGAGGGTGGTTAGATGAGGTACGATG
Found at i:780412 original size:16 final size:16
Alignment explanation
Indices: 780393--780428 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
780383 TGTGGTACCC
*
780393 GATGATGCTACTCGAT
1 GATGATGCTACTCAAT
780409 GATGATGCTACTCAAT
1 GATGATGCTACTCAAT
780425 GATG
1 GATG
780429 CTAATGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (16 bp):
GATGATGCTACTCAAT
Left flanking sequence: Indices 779893 -- 780392
CTAATCGGCGATGGGCTTTTCGAATGCCTCTAATCCGATGGGATAGCTCTAATCCGATGACTCCG
ATCTGCTGATCCAATCCGCTAGGCTAATCCAATGGCCTCCGCTAATCCAATGGGGGATGGGCTTA
TCAGCTGCTCTTATACACTTCCCCGGATGCTCAAATCCGCTGACTCATTTACAATTTGAGGGGCC
TAATCTCACAGGGGGGATACTCAACGGCTCCTACTCAACGGATTGGCACCGGCATTTGATGCTAC
TCGATCTGATACTTTATGATGCTACTTGATGCTGTTGAGCACAATAGGAGATCCCACTGGAGATG
TACTCGATGCTGTGTTACTCTATGCTGGTTACTGCTTTACTCTATGCTGGCGATCCAAGAGGCGA
TGCTTGTACTCAATGGCTGCATGATTGTACTCAATGCTTGTATTCTCTCGATGACAGATGGTATA
TCGATGATGCTACTCCAGGGCTTGTACTCGATGATTGTGGTACCC
Right flanking sequence: Indices 780429 -- 780928
CTAATGTTATACTCGATCAGTCGATCAGTCATAGTTGCCGGTAGGGAGTCGGATACGATAGTCGA
TGTCGATTGGCGTTGGCGAGTCAATAGCAATGGCGTTGGCAACGGCAGAGAACGAAACAACCTAC
CTGATTCAAAGCTTACCGAGACAGATCAATCGTTCCTACAGATACTCCACATTCCCCATTACCCA
TTACCCTTTCATTCATCCCCTTTAAATCTTCCCCTTTCACTTAACGATACGATACACGGGTTACA
CAATGAGGTTATCACAATGGAGGTTAGGTTACGCGATGAGGGTGGTTAGATGAGGTACGATGCAT
GAGCTTACACGATGCAGGCAGGTTCAATGAGATTAGGTTACACGGAGAGCTACACGATTTATGCA
GGTTGGTTCGATGAGGTACAATGCATGAATGAGGTACGATGCATTAGGTTCGATTAGGTAGGTTA
CACATTTCGAGTTCGATTTTGATGTTGATTTACGATGGCAATGGC
Found at i:780426 original size:29 final size:29
Alignment explanation
Indices: 780372--780431 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
780362 CCAGGGCTTG
* *
780372 TACTCGATGATTGTGGTACCCGATGATGC
1 TACTCGATGATTGTGCTACCCAATGATGC
*
780401 TACTCGATGA-TGATGCTACTCAATGATGC
1 TACTCGATGATTG-TGCTACCCAATGATGC
780430 TA
1 TA
780432 ATGTTATACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 25 0.93
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (29 bp):
TACTCGATGATTGTGCTACCCAATGATGC
Left flanking sequence: Indices 779872 -- 780371
GACGAATGATGATCGACTCCGCTAATCGGCGATGGGCTTTTCGAATGCCTCTAATCCGATGGGAT
AGCTCTAATCCGATGACTCCGATCTGCTGATCCAATCCGCTAGGCTAATCCAATGGCCTCCGCTA
ATCCAATGGGGGATGGGCTTATCAGCTGCTCTTATACACTTCCCCGGATGCTCAAATCCGCTGAC
TCATTTACAATTTGAGGGGCCTAATCTCACAGGGGGGATACTCAACGGCTCCTACTCAACGGATT
GGCACCGGCATTTGATGCTACTCGATCTGATACTTTATGATGCTACTTGATGCTGTTGAGCACAA
TAGGAGATCCCACTGGAGATGTACTCGATGCTGTGTTACTCTATGCTGGTTACTGCTTTACTCTA
TGCTGGCGATCCAAGAGGCGATGCTTGTACTCAATGGCTGCATGATTGTACTCAATGCTTGTATT
CTCTCGATGACAGATGGTATATCGATGATGCTACTCCAGGGCTTG
Right flanking sequence: Indices 780432 -- 780931
ATGTTATACTCGATCAGTCGATCAGTCATAGTTGCCGGTAGGGAGTCGGATACGATAGTCGATGT
CGATTGGCGTTGGCGAGTCAATAGCAATGGCGTTGGCAACGGCAGAGAACGAAACAACCTACCTG
ATTCAAAGCTTACCGAGACAGATCAATCGTTCCTACAGATACTCCACATTCCCCATTACCCATTA
CCCTTTCATTCATCCCCTTTAAATCTTCCCCTTTCACTTAACGATACGATACACGGGTTACACAA
TGAGGTTATCACAATGGAGGTTAGGTTACGCGATGAGGGTGGTTAGATGAGGTACGATGCATGAG
CTTACACGATGCAGGCAGGTTCAATGAGATTAGGTTACACGGAGAGCTACACGATTTATGCAGGT
TGGTTCGATGAGGTACAATGCATGAATGAGGTACGATGCATTAGGTTCGATTAGGTAGGTTACAC
ATTTCGAGTTCGATTTTGATGTTGATTTACGATGGCAATGGCGTT
Found at i:780706 original size:14 final size:14
Alignment explanation
Indices: 780682--780714 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
780672 ACGATACACG
780682 GGTTACACAAT-GA
1 GGTTACACAATGGA
780695 GGTTATCACAATGGA
1 GGTTA-CACAATGGA
780710 GGTTA
1 GGTTA
780715 GGTTACGCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 6 0.33
15 7 0.39
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (14 bp):
GGTTACACAATGGA
Left flanking sequence: Indices 780182 -- 780681
TGCTGTTGAGCACAATAGGAGATCCCACTGGAGATGTACTCGATGCTGTGTTACTCTATGCTGGT
TACTGCTTTACTCTATGCTGGCGATCCAAGAGGCGATGCTTGTACTCAATGGCTGCATGATTGTA
CTCAATGCTTGTATTCTCTCGATGACAGATGGTATATCGATGATGCTACTCCAGGGCTTGTACTC
GATGATTGTGGTACCCGATGATGCTACTCGATGATGATGCTACTCAATGATGCTAATGTTATACT
CGATCAGTCGATCAGTCATAGTTGCCGGTAGGGAGTCGGATACGATAGTCGATGTCGATTGGCGT
TGGCGAGTCAATAGCAATGGCGTTGGCAACGGCAGAGAACGAAACAACCTACCTGATTCAAAGCT
TACCGAGACAGATCAATCGTTCCTACAGATACTCCACATTCCCCATTACCCATTACCCTTTCATT
CATCCCCTTTAAATCTTCCCCTTTCACTTAACGATACGATACACG
Right flanking sequence: Indices 780715 -- 781214
GGTTACGCGATGAGGGTGGTTAGATGAGGTACGATGCATGAGCTTACACGATGCAGGCAGGTTCA
ATGAGATTAGGTTACACGGAGAGCTACACGATTTATGCAGGTTGGTTCGATGAGGTACAATGCAT
GAATGAGGTACGATGCATTAGGTTCGATTAGGTAGGTTACACATTTCGAGTTCGATTTTGATGTT
GATTTACGATGGCAATGGCGTTGGCAACGGCAGAGAACCAACCCACCTACCCGATTCAAAGCTTA
CCCTGACGGAACACGGTTTCTACAGCAGCTTACATTACTCTTGAAACTCCCATTTCACCTAACGA
TAACGCAACGAGGGTTACACAATGAGGTGTTACCGATCGATGAGGGACGTGTTCCGGATGAGGTT
TGCTTACCGACGATGGAGGTGGTTTCCAATGAAGTTATACGATGATGTGAGTGAGTGAGATGAGG
TTCCACGACGATAAGGGTTCCACAATGAGGTGACTGAGGTGAGTC
Found at i:782118 original size:14 final size:13
Alignment explanation
Indices: 782093--782126 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
782083 GAAACTTATT
782093 GCATTGATTGATC
1 GCATTGATTGATC
*
782106 GCATTGCATTGATT
1 GCATTG-ATTGATC
782120 GCATTGA
1 GCATTGA
782127 GAACATAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (13 bp):
GCATTGATTGATC
Left flanking sequence: Indices 781593 -- 782092
GAGGTAGAACAATAGAGAGATAAATATAATGCTCCTTCCCGCTTTCTGTGAGGCTGCTGACCAGT
ATATGTCGCCAGAAGTGGACTATAGCTCTTTGCTCTTGACCCTATTGCTATGCGCTTTATGGCCC
TGCCTGCTACGCTCTTATCAGCCACTATTGCTATGTGCTCTATCCACTATTGATTCGCTCTTTTG
TTCCTCTGCCTGCTGCTCTATCCTGACCCTATAGCTCTTCGCTCTTTAAAGTATCGCTCTATGCT
TTTATTCTCCTGCCTGCTACGCTCTAATCATTCCCGTACCGTACCGTTCCTTCTTTTGTTAGCGC
TCTGCTTTTCCAGATCCATAGCTCTTAGCCATACTTCTGCGCTCTTTCTTTCTGCGCACACTGAT
CAGTTGGTTCAGTGGTTTCATTTCCGTACCGTAAGGCCCGTTTCACTTATACCCTTCATTACCCT
TTTACCGGGCGGACAACAGTTTGGGGTTAGGAACGGAAACTTATT
Right flanking sequence: Indices 782127 -- 782626
GAACATAGTTGTTGGGGGTGGGGCGTTCTAACTAATACATCTGCCAATAGCACGTACCCTTATTC
CCCATCTCACGTACCGATAATACCCGTACTGATGAATTAGCTCTATTACTTTATAACCATCTCAC
GTACCCATCGAGGAATATAGAGGTCTCCCCATCGAGGTACAATCGAGAGACAACAGATTCTGGAG
GAGGCCGCTTCGCAAGCAACTGATGAGATAGATTCACTTGATTGAACACATAGTTGGAGCTGGGG
CGGTACACCGGACGGAAACAGATAATCAGAGATGGTATTATCGGCCAACGGATGGATGGATGGAT
ACTGAAGAGAGAAGGAAGGATCAGTAAGGCCCCATAGTTGGAGGTAAGGCCCGGACACTGATTGA
TCGATTCGAGTGATGGATAATATAATTCCAATTCGCCCACCATTCTTGCTTTCGCGCATACCATA
CCCGCCATTCCCATTCCAGCATTCTAGCATTACCGCATTCCCAAT
Found at i:786601 original size:32 final size:32
Alignment explanation
Indices: 786555--786617 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
786545 ATTGATTTAT
* * *
786555 TGATTGATGGAAGGATTGAGTGAGGGATTGAG
1 TGATGGATGGAAGGATTCAGTGAGCGATTGAG
*
786587 TGATGGATGGAAGGATTCATTGAGCGATTGA
1 TGATGGATGGAAGGATTCAGTGAGCGATTGA
786618 TTTAAGCCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.29, C:0.03, G:0.40, T:0.29
Consensus pattern (32 bp):
TGATGGATGGAAGGATTCAGTGAGCGATTGAG
Left flanking sequence: Indices 786055 -- 786554
AGAAGGTTGGTCTTTGAGATTCTTCCGAAACAAAATCTTTCTAGCCTTCTGGGTTCTCCCTTTCC
TATTGATCGGGGGAAAGAAAGAGGACAGCTGTTCGGGTCTTCTACAGAAGCGGTGAATTGCTCTC
GCTCGGAGCCCAGTGGCAGATGCGTGACGAAAGCCCCCAAACACGTTGAAACTATTAATGAAAGC
TAGGGAGCACAGTGGCATCGATGCTGGGCTGGTACGGTCACCTCCCTATGCTTTACTGTCAAAGA
TTTCAGGGAGTGTTAAAGCTAGAAAACAGACATAATCTCGTGTACCGACCATAGCACTAGTTGGG
TGGAGTCCGTGTTCAAGCCCTAAAGCTTGCCTTGCTTACGGGTTCCCTTCAGGCCGAAGGCGATG
GTTCAGGTGGGTTTCGCTCATAACAAAATCCAGTTAATAGGCCGGTTCGACCTCACACAATGACG
AAAAGTGACCTTAAATCGAAGAATAAGGGCCATAGATTGATTTAT
Right flanking sequence: Indices 786618 -- 787117
TTTAAGCCCTGCCCTCCATGCCCTCACGAAGGATGGATTGATTGAGGGAAGGAAGGCGAATAAGG
AAGTACCCTTCTAATGAGGAAGCAGCTCTAAGGAAGAAGCCAGCAGCATGGAGTGAGTTTCCCGC
TTCATGAACAAACAGCTTTCTCTTTTTCTCTACCTTTATCTCTGTTTCTCTACCTTTATCCACCT
TTATATCTATCTCTTACCTAGCCTCTATCTCTGTCCCGCTACTTCTTTGCCTACCTCACCCATAC
TTATTCGCCTCACCCGCTCGCTCTTTGAAGGGTCACTTAAATCCATTTATTTCACTAGCAAAGCG
CTCTGTCCCGCTACTTATTTGCCTCACCTAGCCCCTCTCTCTGTCCCGCTACATACTTAGTGCCC
CGGCTTGCTTAACTGGCACCCATCTCGGCACTGGAACCCACCAATCAAGACGCCCCCCCAACCCC
CCGGCATTCATTTGGCAGTCAAGCAAGACGCACCAGACCCCTCTC
Found at i:786795 original size:20 final size:20
Alignment explanation
Indices: 786766--786807 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
786756 CAAACAGCTT
*
786766 TCTCTTTTTCTCTACCTTTA
1 TCTCTGTTTCTCTACCTTTA
786786 TCTCTGTTTCTCTACCTTTA
1 TCTCTGTTTCTCTACCTTTA
786806 TC
1 TC
786808 CACCTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.10, C:0.31, G:0.02, T:0.57
Consensus pattern (20 bp):
TCTCTGTTTCTCTACCTTTA
Left flanking sequence: Indices 786266 -- 786765
ATCGATGCTGGGCTGGTACGGTCACCTCCCTATGCTTTACTGTCAAAGATTTCAGGGAGTGTTAA
AGCTAGAAAACAGACATAATCTCGTGTACCGACCATAGCACTAGTTGGGTGGAGTCCGTGTTCAA
GCCCTAAAGCTTGCCTTGCTTACGGGTTCCCTTCAGGCCGAAGGCGATGGTTCAGGTGGGTTTCG
CTCATAACAAAATCCAGTTAATAGGCCGGTTCGACCTCACACAATGACGAAAAGTGACCTTAAAT
CGAAGAATAAGGGCCATAGATTGATTTATTGATTGATGGAAGGATTGAGTGAGGGATTGAGTGAT
GGATGGAAGGATTCATTGAGCGATTGATTTAAGCCCTGCCCTCCATGCCCTCACGAAGGATGGAT
TGATTGAGGGAAGGAAGGCGAATAAGGAAGTACCCTTCTAATGAGGAAGCAGCTCTAAGGAAGAA
GCCAGCAGCATGGAGTGAGTTTCCCGCTTCATGAACAAACAGCTT
Right flanking sequence: Indices 786808 -- 787307
CACCTTTATATCTATCTCTTACCTAGCCTCTATCTCTGTCCCGCTACTTCTTTGCCTACCTCACC
CATACTTATTCGCCTCACCCGCTCGCTCTTTGAAGGGTCACTTAAATCCATTTATTTCACTAGCA
AAGCGCTCTGTCCCGCTACTTATTTGCCTCACCTAGCCCCTCTCTCTGTCCCGCTACATACTTAG
TGCCCCGGCTTGCTTAACTGGCACCCATCTCGGCACTGGAACCCACCAATCAAGACGCCCCCCCA
ACCCCCCGGCATTCATTTGGCAGTCAAGCAAGACGCACCAGACCCCTCTCGGCAACCGCTTGATG
GATCGTGATGGATCGCCTCATTAAGTATTTACTCCGATCTCCGATTCTCGGATCGGACCTTTCAA
TTCGCGTTCGAAACATGTTTGTTATATACGCAATTATTACAAATAAGTTTGTTCGGCACACATAA
GTGTCATCAGTTTGTTCGGCATACCCACGCCACTGTTTGTTCGGA
Found at i:787320 original size:20 final size:20
Alignment explanation
Indices: 787292--787331 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
787282 CATACCCACG
*
787292 CCACTGTTTGTTCGGAACAC
1 CCACGGTTTGTTCGGAACAC
*
787312 CCACGGTTTGTTCGGCACAC
1 CCACGGTTTGTTCGGAACAC
787332 ATAAGTGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.17, C:0.33, G:0.23, T:0.28
Consensus pattern (20 bp):
CCACGGTTTGTTCGGAACAC
Left flanking sequence: Indices 786792 -- 787291
TTTCTCTACCTTTATCCACCTTTATATCTATCTCTTACCTAGCCTCTATCTCTGTCCCGCTACTT
CTTTGCCTACCTCACCCATACTTATTCGCCTCACCCGCTCGCTCTTTGAAGGGTCACTTAAATCC
ATTTATTTCACTAGCAAAGCGCTCTGTCCCGCTACTTATTTGCCTCACCTAGCCCCTCTCTCTGT
CCCGCTACATACTTAGTGCCCCGGCTTGCTTAACTGGCACCCATCTCGGCACTGGAACCCACCAA
TCAAGACGCCCCCCCAACCCCCCGGCATTCATTTGGCAGTCAAGCAAGACGCACCAGACCCCTCT
CGGCAACCGCTTGATGGATCGTGATGGATCGCCTCATTAAGTATTTACTCCGATCTCCGATTCTC
GGATCGGACCTTTCAATTCGCGTTCGAAACATGTTTGTTATATACGCAATTATTACAAATAAGTT
TGTTCGGCACACATAAGTGTCATCAGTTTGTTCGGCATACCCACG
Right flanking sequence: Indices 787332 -- 787831
ATAAGTGTCATCGGTTTCCTTAAAATGGTTGTATTGGGTCAGTCAAGGGGTTTGGGTCAGTGGGT
GGAGTGGGTAAGTGAAGGGGTAGGGTGCATTAGGCTCAAGGGGTAGGTTCAAGGGGTAGGTGTCC
GGCTACCACCCATCTAACTCAATTTCTTTTGCACCGATCGATGCAAGGGATAAGTGTCCGGATTA
CCGCGCTCAAGGGAAAAGTGCATTTAATGGCGCAACCCTCCTCGAAAGTTACCCCCCTCGAAAGT
TACCTGACACGAAATACCGGCTAGTTACCTACACTAAATACCGGCATTGACCCTACGCCTATAAG
CAAGATATTTTTATACCCGAAATCTATAGTTGCTCTCACACTTTATCAAGTGCCTAAAAAGCCTT
ATATACGGCGATAAATAGATCCGTTGATCGGTCATTATAGGTGGGTTATCCCTTCTGTTAATCAG
GGGTGGGTGTGTGCTCTTTTTCCTCACCCTACTTTGAATACGGGT
Found at i:787448 original size:13 final size:13
Alignment explanation
Indices: 787427--787457 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
787417 TAGGGTGCAT
*
787427 TAGGCTCAAGGGG
1 TAGGTTCAAGGGG
787440 TAGGTTCAAGGGG
1 TAGGTTCAAGGGG
787453 TAGGT
1 TAGGT
787458 GTCCGGCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.10, G:0.45, T:0.23
Consensus pattern (13 bp):
TAGGTTCAAGGGG
Left flanking sequence: Indices 786927 -- 787426
TTTCACTAGCAAAGCGCTCTGTCCCGCTACTTATTTGCCTCACCTAGCCCCTCTCTCTGTCCCGC
TACATACTTAGTGCCCCGGCTTGCTTAACTGGCACCCATCTCGGCACTGGAACCCACCAATCAAG
ACGCCCCCCCAACCCCCCGGCATTCATTTGGCAGTCAAGCAAGACGCACCAGACCCCTCTCGGCA
ACCGCTTGATGGATCGTGATGGATCGCCTCATTAAGTATTTACTCCGATCTCCGATTCTCGGATC
GGACCTTTCAATTCGCGTTCGAAACATGTTTGTTATATACGCAATTATTACAAATAAGTTTGTTC
GGCACACATAAGTGTCATCAGTTTGTTCGGCATACCCACGCCACTGTTTGTTCGGAACACCCACG
GTTTGTTCGGCACACATAAGTGTCATCGGTTTCCTTAAAATGGTTGTATTGGGTCAGTCAAGGGG
TTTGGGTCAGTGGGTGGAGTGGGTAAGTGAAGGGGTAGGGTGCAT
Right flanking sequence: Indices 787458 -- 787957
GTCCGGCTACCACCCATCTAACTCAATTTCTTTTGCACCGATCGATGCAAGGGATAAGTGTCCGG
ATTACCGCGCTCAAGGGAAAAGTGCATTTAATGGCGCAACCCTCCTCGAAAGTTACCCCCCTCGA
AAGTTACCTGACACGAAATACCGGCTAGTTACCTACACTAAATACCGGCATTGACCCTACGCCTA
TAAGCAAGATATTTTTATACCCGAAATCTATAGTTGCTCTCACACTTTATCAAGTGCCTAAAAAG
CCTTATATACGGCGATAAATAGATCCGTTGATCGGTCATTATAGGTGGGTTATCCCTTCTGTTAA
TCAGGGGTGGGTGTGTGCTCTTTTTCCTCACCCTACTTTGAATACGGGTTTCGCAATAAATTCCT
CACCCACTTAGGGTGAGCCTGCTAGCGCATCCTCTCCCTTTGGTCGAGCCTGCTAGCGCATCCTA
AGTTACTTATTTGGTGAGGGACCTAAAGTCGGGTGAGCAAGAAAT
Found at i:787585 original size:16 final size:16
Alignment explanation
Indices: 787561--787595 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
787551 TAATGGCGCA
*
787561 ACCCTCCTCGAAAGTT
1 ACCCCCCTCGAAAGTT
787577 ACCCCCCTCGAAAGTT
1 ACCCCCCTCGAAAGTT
787593 ACC
1 ACC
787596 TGACACGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.43, G:0.11, T:0.20
Consensus pattern (16 bp):
ACCCCCCTCGAAAGTT
Left flanking sequence: Indices 787061 -- 787560
CCCCCCAACCCCCCGGCATTCATTTGGCAGTCAAGCAAGACGCACCAGACCCCTCTCGGCAACCG
CTTGATGGATCGTGATGGATCGCCTCATTAAGTATTTACTCCGATCTCCGATTCTCGGATCGGAC
CTTTCAATTCGCGTTCGAAACATGTTTGTTATATACGCAATTATTACAAATAAGTTTGTTCGGCA
CACATAAGTGTCATCAGTTTGTTCGGCATACCCACGCCACTGTTTGTTCGGAACACCCACGGTTT
GTTCGGCACACATAAGTGTCATCGGTTTCCTTAAAATGGTTGTATTGGGTCAGTCAAGGGGTTTG
GGTCAGTGGGTGGAGTGGGTAAGTGAAGGGGTAGGGTGCATTAGGCTCAAGGGGTAGGTTCAAGG
GGTAGGTGTCCGGCTACCACCCATCTAACTCAATTTCTTTTGCACCGATCGATGCAAGGGATAAG
TGTCCGGATTACCGCGCTCAAGGGAAAAGTGCATTTAATGGCGCA
Right flanking sequence: Indices 787596 -- 788095
TGACACGAAATACCGGCTAGTTACCTACACTAAATACCGGCATTGACCCTACGCCTATAAGCAAG
ATATTTTTATACCCGAAATCTATAGTTGCTCTCACACTTTATCAAGTGCCTAAAAAGCCTTATAT
ACGGCGATAAATAGATCCGTTGATCGGTCATTATAGGTGGGTTATCCCTTCTGTTAATCAGGGGT
GGGTGTGTGCTCTTTTTCCTCACCCTACTTTGAATACGGGTTTCGCAATAAATTCCTCACCCACT
TAGGGTGAGCCTGCTAGCGCATCCTCTCCCTTTGGTCGAGCCTGCTAGCGCATCCTAAGTTACTT
ATTTGGTGAGGGACCTAAAGTCGGGTGAGCAAGAAATTCCTTAGAGGCTCGTATCATGTCGGTAA
CTAGAGAGATAAGAAAGAGAAGACACAACTCCTTAAATCAGGCAGGATCTTTCTATATCTATATC
TATCTATCTAGATATAGATATAGGTATATAGATATACAGGCGTAG
Found at i:787630 original size:24 final size:25
Alignment explanation
Indices: 787589--787636 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
787579 CCCCCTCGAA
787589 AGTTACCTGACACGAAATACCGGCT
1 AGTTACCTGACACGAAATACCGGCT
*
787614 AGTTACCT-ACACTAAATACCGGC
1 AGTTACCTGACACGAAATACCGGC
787637 ATTGACCCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (25 bp):
AGTTACCTGACACGAAATACCGGCT
Left flanking sequence: Indices 787089 -- 787588
AGTCAAGCAAGACGCACCAGACCCCTCTCGGCAACCGCTTGATGGATCGTGATGGATCGCCTCAT
TAAGTATTTACTCCGATCTCCGATTCTCGGATCGGACCTTTCAATTCGCGTTCGAAACATGTTTG
TTATATACGCAATTATTACAAATAAGTTTGTTCGGCACACATAAGTGTCATCAGTTTGTTCGGCA
TACCCACGCCACTGTTTGTTCGGAACACCCACGGTTTGTTCGGCACACATAAGTGTCATCGGTTT
CCTTAAAATGGTTGTATTGGGTCAGTCAAGGGGTTTGGGTCAGTGGGTGGAGTGGGTAAGTGAAG
GGGTAGGGTGCATTAGGCTCAAGGGGTAGGTTCAAGGGGTAGGTGTCCGGCTACCACCCATCTAA
CTCAATTTCTTTTGCACCGATCGATGCAAGGGATAAGTGTCCGGATTACCGCGCTCAAGGGAAAA
GTGCATTTAATGGCGCAACCCTCCTCGAAAGTTACCCCCCTCGAA
Right flanking sequence: Indices 787637 -- 788136
ATTGACCCTACGCCTATAAGCAAGATATTTTTATACCCGAAATCTATAGTTGCTCTCACACTTTA
TCAAGTGCCTAAAAAGCCTTATATACGGCGATAAATAGATCCGTTGATCGGTCATTATAGGTGGG
TTATCCCTTCTGTTAATCAGGGGTGGGTGTGTGCTCTTTTTCCTCACCCTACTTTGAATACGGGT
TTCGCAATAAATTCCTCACCCACTTAGGGTGAGCCTGCTAGCGCATCCTCTCCCTTTGGTCGAGC
CTGCTAGCGCATCCTAAGTTACTTATTTGGTGAGGGACCTAAAGTCGGGTGAGCAAGAAATTCCT
TAGAGGCTCGTATCATGTCGGTAACTAGAGAGATAAGAAAGAGAAGACACAACTCCTTAAATCAG
GCAGGATCTTTCTATATCTATATCTATCTATCTAGATATAGATATAGGTATATAGATATACAGGC
GTAGCCCCACGGCGGCGGTTACGGAATCTCATGTTCGGTCGGAGC
Found at i:791134 original size:22 final size:22
Alignment explanation
Indices: 791106--791150 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
791096 TGCCATACCT
791106 TAGTGTTTTCCCGATTTATCAC
1 TAGTGTTTTCCCGATTTATCAC
791128 TAGTGTTTTCCCGATTTATCAC
1 TAGTGTTTTCCCGATTTATCAC
791150 T
1 T
791151 CGTAAGGCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.13, T:0.47
Consensus pattern (22 bp):
TAGTGTTTTCCCGATTTATCAC
Left flanking sequence: Indices 790606 -- 791105
GCCAGCCAGTTGGTCCTCTAAGTGCTGTCAATAATCTCTGTTCTCGTGTTCGAGAGCTGCCTTGC
GAGTGGGGATGCTCCGACAAATAACCTTTGAAAGGGTTAGAGAAGGCGAAGGAGGAAGTTGGCAC
TAGTATGCCATTTTGTGAGCTCCTTCAATGGAGTCTATTTACTGTAGGGAAGAACCATCCGATAT
TCCATTATTTCGGTAGCCATATTAGGGTTATTGCACCAACATTGACAAGTTTCTTCCACTGGCAG
CCGTCGACTATTGAAGTGAGATTGATTGCTACGACTCGAGGTAAATACCTGAGTAGGCGGATTTC
CTTATTCGAACGAAATCCACGGATAAAGCATTGGAATGGAACCAACCGAACAATCCGATGACTAG
ATTTCCCTTTCGTCTGTCTCTCCGCGAGATTCCTTTGTTTAAAGCGCCCAGCACCCTTCCTTCCA
TTTCCAGAGTTTCCTCGATGATCATTAAGAGAATCTGCCATACCT
Right flanking sequence: Indices 791151 -- 791650
CGTAAGGCGGGATCAAACTGGAACTATTAGAGCAACCTCCAGGCTCTGCAGACTCAGCAAAACAC
TTACAGGGGCCCAGGCACCGCTCCAGCAAACTAATTCCATTCCAGGGATGAGAGGGAAAACTCCC
AAACCGAAGATGAGATTGGCTGCTCTTCTTTCGGGTTGCGCCCACTGGAGAATGGGGATAAATCA
GATCCAATTGAGAAGAGAAGAACCAATATGGGAAGGCGGAATAGACGTTCCTATCCACGTCACTA
ATCTCATGAACATCTCGCTCAATCTTTTCCTTGGACCGCCGGGACCTGAAAGAATGTGGAGAAGA
ATTCTTGCTGAAGCTGCTTCCATACACCCCCTATCCTAGAAAAGGCTATAGAAAACCTATTTGGA
AGTACTGGGGGTAGCGGTGATCCAGTAAACAATATTGCCAGCCTGGGACTTAAAGACAAATCGTT
CTTCGAAATCAAATTGTAACTACTGGAACGAGATCTCCCCAAAGG
Found at i:794471 original size:23 final size:23
Alignment explanation
Indices: 794441--794486 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
794431 TAGGTAGGGG
*
794441 TGTATCGGTTGTATCTGTTCACT
1 TGTATCGGTTGTATCCGTTCACT
*
794464 TGTATCGGTTGTCTCCGTTCACT
1 TGTATCGGTTGTATCCGTTCACT
794487 GCTATGAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.46
Consensus pattern (23 bp):
TGTATCGGTTGTATCCGTTCACT
Left flanking sequence: Indices 793941 -- 794440
CGACATAAAGGATAATATACGAGTGCGGCCAAGTGAAGGCGTATCCAACCAAACCTCTTTGATTT
TGGAGAATGAATTGATTTCCTGAATGTTTGATGTTCCGGGAAAGCCTCCCTGTCATTGAAGGAGG
GTGTGACGTCTATAATAGACCTCATGCTCGTAAGGTGTTGTTTTGTAAAGTGGTTTTTTTAACTT
ATATAAGAGACTCGACTCTCTATGGTTCAGGTGGGGCAGCATGCTCCCATGAACTTTCTCCTTTC
GGCCCCCTATTATTATAAAGCATTGACGGGGGCCTGCACAAGCGTATAACGGCGTACCTTTCGCA
TAATGAGTCAGCTAGTGGATGGGAACAGCGGAACGATCGATTAGGTGTAGGAACGACAGTGAGCG
ACAGCGAGCCACTCTTCCCTAAGTGTTTCGGAGCCACCTCTTTTTTTTTTGATGCCCGGGCATAG
AATGGGAATGGTTTGGGCCAATCCCTCCCTATAGGTAGGTAGGGG
Right flanking sequence: Indices 794487 -- 794986
GCTATGAAAGAGAGAACCGCCCCTTCTTGCATGCATATGAATCTGGTGTATTCGAACGGTACCAA
GAATTGCTAAAAGCTAGCTGTTCCAAATCGAGCAATCGAAGTAAGTAATGTAATTCATTTTGGCA
GAACAAAATTGGGAAATAATGGGGCCCTCTACGAAAGCAAGCGTCTCAGAGTGCTTGGTTTACCG
CTTCGATGAGTCACTCAAGCTTTGCCCAAAATATATATATATAAAGGCTCTTTTCACCGGATGAA
GTGAATTGATCGGAGTAAGCTACGGTCATTGGTCTAGAATCGCGCGCTAGCCCCTCCCTACTCAG
CTAAGTAAGGAGGGAGTGAGTTTAGTAGCCAATGCTATTCCATATATTGAATGAGGGTCTCAACC
TTACTTCGACATTCTCTCGGTATGGTAATGGTGGTGGGACTTATGATCATACATAGGAAAAGACT
TGCCGGTGAGGCGGGGAAACCCGAAAAAAAGGAGGGAGCTAAACA
Found at i:799973 original size:14 final size:14
Alignment explanation
Indices: 799956--799986 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
799946 GGTGGGCTTC
799956 TGGCTTAAGGCTAA
1 TGGCTTAAGGCTAA
799970 TGGCTTAAGGCTAA
1 TGGCTTAAGGCTAA
799984 TGG
1 TGG
799987 TGGTTCGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (14 bp):
TGGCTTAAGGCTAA
Left flanking sequence: Indices 799456 -- 799955
CATACATGGGAAATAGTCAGGGTTGAGCGAGAGGGTCTTCAGGCTCTAGAGCTGAGATGGCTCCT
TTTGTGCTTTTCTTTTTCTCTTTTTCTTCCCTGATAATATCATAGGGATCAATAGATTCTAGGGG
CTTAATACTTTAAAACAAAGGCACTGCAGAACTAGCTTCTTGAGAAGAAGAAACTGCAGGAGTGC
TGGGGAGTCCCCCTGGCTCTCTTTTCGTTCTCAGTCCTTTACCTGCCTCGAAGCCCTGCTATATA
GGCAAACCAGTCTATTGGACACACATAGGATTGGGATTCCAGCTTCCTTCCTCCCTTCCCGGTAA
CATGTCTGTCTGCCTTTCTCCTTCCGTCGGGGTTCTATCTGTGGGCTCTCTCCGTCCGTTGGACC
ACCGCTCTAAAAAGACTGGCTATAAATAAAGTAAATCAAACAAAATAAATCACTCACTGGGTGTA
CTTGGCCGATGGCTTCTGTTGTACTTGGTGGGCTTGGTGGGCTTC
Right flanking sequence: Indices 799987 -- 800486
TGGTTCGATCGGTTGGCTGTTTGGGTAAGACGACTCATCCTCATCCTCCTCCACCTCCTAATCAT
TCGGTTGGCTCTTATTTGGGGAAGCAGAAGACTCATCAATCAACTCAATCAAATAAAAGAAAAAT
AAGTAAATAAAATCCAATCAAACAGAAGTTCTGGGTGTAGCGTAGATAAACATCGCGGTCAAGCC
TCAAAGCACGCCATCCCGTGGTCGAAGCGTCCACCCTGTCTGTCTGGGGTCATTCTGTGCACCGC
GTCCCATGGTGCGTGTCCTAATGTTCATAATGTTTATTTCTTTCTTCGTCAAGCCCGGTAAGTGT
TGGCTTTCCTGGTTTTTCCGCAGGGGAAGTGGCAGGGGGTCGGGTGAATTCCATCCATCCCACTA
TCCATCCATTCATCTCCATCCCCGGTTATTATCCCCGCCATCAAGCAAGCTGCTGGGTTATCCTT
CCCAGCCCGCCTCTCCTACCAGCCTTTCTCCCAGCCTTACCCATA
Found at i:810686 original size:13 final size:13
Alignment explanation
Indices: 810668--810692 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
810658 AAGGCAAGTC
810668 CGGATTGAAAGGT
1 CGGATTGAAAGGT
810681 CGGATTGAAAGG
1 CGGATTGAAAGG
810693 CCTGGAGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.40, T:0.20
Consensus pattern (13 bp):
CGGATTGAAAGGT
Left flanking sequence: Indices 810168 -- 810667
AAGCTACATTCGAGGATCTGGATATCGAAGTATCCCTCCCAGGGCCGCTCAAGCTGCCTCAAGGT
AGGTATTTCATCTCATATCCATCCATCCATCAGTCTCAGAGGGAATCCGATTCATACATAGTTCC
TTAACCCCGGCCTCCCCTCCTCTTCCATAGCTTCTATAAAATTCTAAATTGAGACTCAGACCCGG
GGAGAGTTTCATTTTATTATATACCGGGCAGAAACTGACGTTGCGCGTGCTTCTGGTCCAGAGCC
TGTTCAGAGTGAATGATCCCGTGAAAAATCGAGATTGAGCAGATTCCGTGCAGTAAGGGTTTCGT
TAGGTGTCTATTTTTCTAAGGCAGTTTTAGCTTAGCGGGTTATTAGCAAGTTCGTAGGTGTTCCG
GGCAGATGGTAACGTAATCCCCAGTATCTAGGCTTCGAATGAGAGAATTCATTTTTCCCTTATAC
AGACATAGACATCTCCCGGCATTCATTTGGCAGTCAAGGCAAGTC
Right flanking sequence: Indices 810693 -- 811192
CCTGGAGGAAGGCCCGCATCGAAAGGCCTGGAGAGAGGTCCAGATTTACAGGTCCCGATAAAGGT
CCGGATTTACAGGTCCGAGAAAGGTCCAGAAGGTAACCCGGAAGGTCTGAAAGGTCACCCGGATT
AGCTGGTCCATAAAGACATCCCGGAAGGTAAGTCACCCGGAAGATCATCCCCGAAAGTCATACCG
GATTGGTGGGTCGGGAAGGTCATTTCATATTGTGTAGATGAGGTAGGGTAAGGTCATTTCGGTAT
GCGCCATGAAGCTACGCGCCAACCCATAAACATGAAGCAACCGGTGATGCCCGCCCAGCAAACGT
AACGGTGGTGCCCGCCAGAGGAGATACAGACGCAAACCCATCAATATGTCTCCGCAACTCATATT
GACTTGCACTCTGTCTCCGCAACCCATATTGACTTGCACCATGAAAAGTTATATCGTGGTACTAT
ATCGTGCTCCCCCAACCCAGATCGACTCGCAACATAGCAATATCA
Found at i:810774 original size:14 final size:14
Alignment explanation
Indices: 810728--810774 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
810718 GCCTGGAGAG
*
810728 AGGTCCAGATTTAC
1 AGGTCCGGATTTAC
* *
810742 AGGTCCCGA--TAA
1 AGGTCCGGATTTAC
810754 AGGTCCGGATTTAC
1 AGGTCCGGATTTAC
810768 AGGTCCG
1 AGGTCCG
810775 AGAAAGGTCC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 10 0.37
14 17 0.63
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (14 bp):
AGGTCCGGATTTAC
Left flanking sequence: Indices 810228 -- 810727
AAGGTAGGTATTTCATCTCATATCCATCCATCCATCAGTCTCAGAGGGAATCCGATTCATACATA
GTTCCTTAACCCCGGCCTCCCCTCCTCTTCCATAGCTTCTATAAAATTCTAAATTGAGACTCAGA
CCCGGGGAGAGTTTCATTTTATTATATACCGGGCAGAAACTGACGTTGCGCGTGCTTCTGGTCCA
GAGCCTGTTCAGAGTGAATGATCCCGTGAAAAATCGAGATTGAGCAGATTCCGTGCAGTAAGGGT
TTCGTTAGGTGTCTATTTTTCTAAGGCAGTTTTAGCTTAGCGGGTTATTAGCAAGTTCGTAGGTG
TTCCGGGCAGATGGTAACGTAATCCCCAGTATCTAGGCTTCGAATGAGAGAATTCATTTTTCCCT
TATACAGACATAGACATCTCCCGGCATTCATTTGGCAGTCAAGGCAAGTCCGGATTGAAAGGTCG
GATTGAAAGGCCTGGAGGAAGGCCCGCATCGAAAGGCCTGGAGAG
Right flanking sequence: Indices 810775 -- 811274
AGAAAGGTCCAGAAGGTAACCCGGAAGGTCTGAAAGGTCACCCGGATTAGCTGGTCCATAAAGAC
ATCCCGGAAGGTAAGTCACCCGGAAGATCATCCCCGAAAGTCATACCGGATTGGTGGGTCGGGAA
GGTCATTTCATATTGTGTAGATGAGGTAGGGTAAGGTCATTTCGGTATGCGCCATGAAGCTACGC
GCCAACCCATAAACATGAAGCAACCGGTGATGCCCGCCCAGCAAACGTAACGGTGGTGCCCGCCA
GAGGAGATACAGACGCAAACCCATCAATATGTCTCCGCAACTCATATTGACTTGCACTCTGTCTC
CGCAACCCATATTGACTTGCACCATGAAAAGTTATATCGTGGTACTATATCGTGCTCCCCCAACC
CAGATCGACTCGCAACATAGCAATATCATGGACCTAGATCCGTATCCCTCTCGCCCCTTCCTCTC
TGCCTTCCATCCCGACCCTTTCTCTCTGCCTTCAATCGTGTCGAC
Found at i:810781 original size:25 final size:26
Alignment explanation
Indices: 810723--810787 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
810713 GAAAGGCCTG
*
810723 GAGAGAGGTCCAGATTTACAGGTCCC
1 GAGAAAGGTCCAGATTTACAGGTCCC
* *
810749 GATAAAGGTCCGGATTTACAGGT-CC
1 GAGAAAGGTCCAGATTTACAGGTCCC
810774 GAGAAAGGTCCAGA
1 GAGAAAGGTCCAGA
810788 AGGTAACCCG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 14 0.41
26 20 0.59
ACGTcount: A:0.31, C:0.20, G:0.31, T:0.18
Consensus pattern (26 bp):
GAGAAAGGTCCAGATTTACAGGTCCC
Left flanking sequence: Indices 810223 -- 810722
GCCTCAAGGTAGGTATTTCATCTCATATCCATCCATCCATCAGTCTCAGAGGGAATCCGATTCAT
ACATAGTTCCTTAACCCCGGCCTCCCCTCCTCTTCCATAGCTTCTATAAAATTCTAAATTGAGAC
TCAGACCCGGGGAGAGTTTCATTTTATTATATACCGGGCAGAAACTGACGTTGCGCGTGCTTCTG
GTCCAGAGCCTGTTCAGAGTGAATGATCCCGTGAAAAATCGAGATTGAGCAGATTCCGTGCAGTA
AGGGTTTCGTTAGGTGTCTATTTTTCTAAGGCAGTTTTAGCTTAGCGGGTTATTAGCAAGTTCGT
AGGTGTTCCGGGCAGATGGTAACGTAATCCCCAGTATCTAGGCTTCGAATGAGAGAATTCATTTT
TCCCTTATACAGACATAGACATCTCCCGGCATTCATTTGGCAGTCAAGGCAAGTCCGGATTGAAA
GGTCGGATTGAAAGGCCTGGAGGAAGGCCCGCATCGAAAGGCCTG
Right flanking sequence: Indices 810788 -- 811287
AGGTAACCCGGAAGGTCTGAAAGGTCACCCGGATTAGCTGGTCCATAAAGACATCCCGGAAGGTA
AGTCACCCGGAAGATCATCCCCGAAAGTCATACCGGATTGGTGGGTCGGGAAGGTCATTTCATAT
TGTGTAGATGAGGTAGGGTAAGGTCATTTCGGTATGCGCCATGAAGCTACGCGCCAACCCATAAA
CATGAAGCAACCGGTGATGCCCGCCCAGCAAACGTAACGGTGGTGCCCGCCAGAGGAGATACAGA
CGCAAACCCATCAATATGTCTCCGCAACTCATATTGACTTGCACTCTGTCTCCGCAACCCATATT
GACTTGCACCATGAAAAGTTATATCGTGGTACTATATCGTGCTCCCCCAACCCAGATCGACTCGC
AACATAGCAATATCATGGACCTAGATCCGTATCCCTCTCGCCCCTTCCTCTCTGCCTTCCATCCC
GACCCTTTCTCTCTGCCTTCAATCGTGTCGACGCCCATTCCTCCC
Found at i:811100 original size:30 final size:30
Alignment explanation
Indices: 811064--811121 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
811054 CCCATCAATA
*
811064 TGTCTCCGCAACTCATATTGACTTGCACTC
1 TGTCTCCGCAACCCATATTGACTTGCACTC
811094 TGTCTCCGCAACCCATATTGACTTGCAC
1 TGTCTCCGCAACCCATATTGACTTGCAC
811122 CATGAAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.31
Consensus pattern (30 bp):
TGTCTCCGCAACCCATATTGACTTGCACTC
Left flanking sequence: Indices 810564 -- 811063
TGGTAACGTAATCCCCAGTATCTAGGCTTCGAATGAGAGAATTCATTTTTCCCTTATACAGACAT
AGACATCTCCCGGCATTCATTTGGCAGTCAAGGCAAGTCCGGATTGAAAGGTCGGATTGAAAGGC
CTGGAGGAAGGCCCGCATCGAAAGGCCTGGAGAGAGGTCCAGATTTACAGGTCCCGATAAAGGTC
CGGATTTACAGGTCCGAGAAAGGTCCAGAAGGTAACCCGGAAGGTCTGAAAGGTCACCCGGATTA
GCTGGTCCATAAAGACATCCCGGAAGGTAAGTCACCCGGAAGATCATCCCCGAAAGTCATACCGG
ATTGGTGGGTCGGGAAGGTCATTTCATATTGTGTAGATGAGGTAGGGTAAGGTCATTTCGGTATG
CGCCATGAAGCTACGCGCCAACCCATAAACATGAAGCAACCGGTGATGCCCGCCCAGCAAACGTA
ACGGTGGTGCCCGCCAGAGGAGATACAGACGCAAACCCATCAATA
Right flanking sequence: Indices 811122 -- 811621
CATGAAAAGTTATATCGTGGTACTATATCGTGCTCCCCCAACCCAGATCGACTCGCAACATAGCA
ATATCATGGACCTAGATCCGTATCCCTCTCGCCCCTTCCTCTCTGCCTTCCATCCCGACCCTTTC
TCTCTGCCTTCAATCGTGTCGACGCCCATTCCTCCCTTCCTTGTAGATGATGCGCACCAAGTAAA
TGAACCACCGATACTAATTTGATTCTTACACAGATGAGGGCTGGCCGTGAGGAGTGACCAAAGGG
GACAGAAGAAGTGAAGGAGTTTCAGGTTGTGCTTTGCTTATTGTAGTTGTATATGCACGTATATA
ATGCAATCTTTTTTAATATACTTTGTAACCTATGCCCTAGACCCTACAGCCTATGCACTCCTTGG
GACCATCCTTAAATGCCTCCCTAATACCTCACCTAGCTAGAATCATCCATACAGTCTCTGACCTC
ACCTTTCAATCCGCATTCTGTTTTCAAATAGTATGTTTGCATTCA
Found at i:814049 original size:24 final size:20
Alignment explanation
Indices: 813982--814040 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
813972 TAAGGGGGGT
*
813982 TTGATCAGGA-CTTGACCGGG
1 TTGATCAGGACCTT-ACTGGG
814002 TTGATCAGGACCTTACTGGG
1 TTGATCAGGACCTTACTGGG
814022 TTGATCAGGACCTTACTGG
1 TTGATCAGGACCTTACTGG
814041 CTGGGTTGAC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
20 34 0.92
21 3 0.08
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (20 bp):
TTGATCAGGACCTTACTGGG
Left flanking sequence: Indices 813482 -- 813981
CCGAGGATAGATGGTAGTCCTTGCCATCCGACCGTGACAGGTACGGATCTGAGGAGAGAGGGGAA
ACGGCTTCGGCCCTTGAGGGGCCTGCGCCGGCTACGAGCGCCCTATCGGCCGCTCTTCGCCTAAT
ACTGGAAGGTTTTCTTTCGTGGATGTAGCGGCAGCGAACCACGTAAAAAAAAGGAGATGAAGAAT
GGACTCACTTTAGCCTCTGGGTCTAAGCTTCCGGGTTCGAATCCCGGCATCTCCAGGACAATGAA
AGTCCACCGGGCTTGAAACTTGATGATCAAATCAGGTGATAGTTAAAGCTGGCCTTCGGGTGTCT
ATGGCATTACGAGGGGGGAGCAGGGAAGGCGGAGGCCCTCTCCCATTATAGTGCCGCACATTTCA
CTTTCGGTTGTTCGTCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGGTTCT
TCGAAGGATTGACTTGAAATAAAGAACCCTTTAGATAAGGGGGGT
Right flanking sequence: Indices 814041 -- 814540
CTGGGTTGACCGGCGAGGACCTTACCTGAGCTCAAGACCTTTCCCTTCTAAAGAAGGGCAGGATA
CTATTTTATTCTCCAACTATTTTCTTCCCCTCAAACTGAAATATATTCCCGAACCTTATTTGAAC
TCGGTAAGTACCAACTCTTCTAGCTAAAGACCAGGACCTTACCGGGTTCAAATTAGAGGTAAGAC
CAGGACCTTTATATTGATGTCGCGGCCGCTCCCCGCCCCCCCCCCTTCCCCCGTTTTTCCTTAGA
TAATAGTATAGTAGTGGCCACTCCACTACAAAGGGGGGACGAAAACGGAATAACACACGTCAGAC
TTACTTACTGCGAGATAACACATTTATAGCAGGAGATACGCCATCCACAGATACACCGATGCATG
CATACGGGTACTCCAGACAGATACCGGATAAATGAATCGACTGGAATAAACCTTTATACCGCACA
GGTTAAATGCTTACTTACTCTCACCGAAGAGAGGATCTATCATCC
Found at i:822795 original size:41 final size:41
Alignment explanation
Indices: 822747--822828 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
822737 AGGTATCGCT
*
822747 TTGGTTCGTTAACCTCTTGCTTTGCTTTACCCCACTTCCTC
1 TTGGTTCGTTAACCCCTTGCTTTGCTTTACCCCACTTCCTC
*
822788 TTGGTTCGTTAACCCCTTGCTTTGCTTTGCCCCACTTCCTC
1 TTGGTTCGTTAACCCCTTGCTTTGCTTTACCCCACTTCCTC
822829 GAACTAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.09, C:0.35, G:0.13, T:0.43
Consensus pattern (41 bp):
TTGGTTCGTTAACCCCTTGCTTTGCTTTACCCCACTTCCTC
Left flanking sequence: Indices 822247 -- 822746
TGGCAGCTTAGCCAAAAATAAGTGTTTGATCCTTCTAACTCAACTAACTATCATCCTTATCACTC
TAAGCACCTTAGCATCCAACCCTTGAACTATCTCCTCACTCTAAGCACCGTTAAGAGAGAGATTA
AGAGATAGAAGAGATAGAGATAAGAGTTTCTGCCTCTGGGTAATAGAGCTAATCTGGCTGGGACC
CTGTAACTATCTCCTCTCACCCTAAGTACGGGTAAGATAGAGGTATCTCCTGTCCATTCTAGAGT
CTCTGCTTTAATCTCTTCCTGATCTGCTCTCACTTGAAATGTATTCGAGTAAGAGCTAGTTAAGT
ATAAGCTAGTAAGCCTGAATCAATGCTTCTAGGCTTTGGGTTGTGTAACCCTTGGCTTTGTTGGG
CTACGACTTTGGTTGTGTAACCCTTGGCTTTGCAATCGTAAGTGAGATAAAGAAGGCAGTGTTAG
GCCTATGGTGAACTTTGCTGTGGTTTACTTTGCTTAGGTATCGCT
Right flanking sequence: Indices 822829 -- 823328
GAACTAAATAAGGCGGTAGGACCTAAATAAGGCGGTAGGAACTAAACGAAAATAAGGCGGTACGA
ACTAAATGAGGCGGTAAGAGCTGAGAGAAGAGTGTTTGCCTATGAGTAATAGATAAAATTTCCTT
TGCATGTCTGTCTGCCCTCTAGGCTAGGTAAGTATCTCTGGCTGTCTCCCCTCTAGGTAAGTATC
TCTGTATGTAATAACTATCTGCTCGCGCTAACAAAGAACAGGTAAGGCTCCGCGCTTAAGGTGAG
ATAGAGAATCTGCTTTTTCTAATTAATATATGGATACATTTTTATGTCCTCCGGAGGCGCCACAT
CCTTTAGTAAAATATTTGACTTCTTGGATGTTTTGTATGTCGTTGATGGGATGATGCTGGCTCTT
TCCTCGATATTTATAGCTAAGAATGTAAGGGTAGTTTATCTGTCCGTTGGTGTTCTTATCTTAAA
GGCTCTGGCTGGTGTTTTGATTTGCTTTCAAGGAAGGGGAAAAAA
Found at i:822856 original size:19 final size:19
Alignment explanation
Indices: 822829--822874 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
822819 CCACTTCCTC
822829 GAACTAAATAAGGCGGTAG
1 GAACTAAATAAGGCGGTAG
*
822848 GACCTAAATAAGGCGGTAG
1 GAACTAAATAAGGCGGTAG
822867 GAACTAAA
1 GAACTAAA
822875 CGAAAATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.43, C:0.13, G:0.28, T:0.15
Consensus pattern (19 bp):
GAACTAAATAAGGCGGTAG
Left flanking sequence: Indices 822329 -- 822828
AACCCTTGAACTATCTCCTCACTCTAAGCACCGTTAAGAGAGAGATTAAGAGATAGAAGAGATAG
AGATAAGAGTTTCTGCCTCTGGGTAATAGAGCTAATCTGGCTGGGACCCTGTAACTATCTCCTCT
CACCCTAAGTACGGGTAAGATAGAGGTATCTCCTGTCCATTCTAGAGTCTCTGCTTTAATCTCTT
CCTGATCTGCTCTCACTTGAAATGTATTCGAGTAAGAGCTAGTTAAGTATAAGCTAGTAAGCCTG
AATCAATGCTTCTAGGCTTTGGGTTGTGTAACCCTTGGCTTTGTTGGGCTACGACTTTGGTTGTG
TAACCCTTGGCTTTGCAATCGTAAGTGAGATAAAGAAGGCAGTGTTAGGCCTATGGTGAACTTTG
CTGTGGTTTACTTTGCTTAGGTATCGCTTTGGTTCGTTAACCTCTTGCTTTGCTTTACCCCACTT
CCTCTTGGTTCGTTAACCCCTTGCTTTGCTTTGCCCCACTTCCTC
Right flanking sequence: Indices 822875 -- 823374
CGAAAATAAGGCGGTACGAACTAAATGAGGCGGTAAGAGCTGAGAGAAGAGTGTTTGCCTATGAG
TAATAGATAAAATTTCCTTTGCATGTCTGTCTGCCCTCTAGGCTAGGTAAGTATCTCTGGCTGTC
TCCCCTCTAGGTAAGTATCTCTGTATGTAATAACTATCTGCTCGCGCTAACAAAGAACAGGTAAG
GCTCCGCGCTTAAGGTGAGATAGAGAATCTGCTTTTTCTAATTAATATATGGATACATTTTTATG
TCCTCCGGAGGCGCCACATCCTTTAGTAAAATATTTGACTTCTTGGATGTTTTGTATGTCGTTGA
TGGGATGATGCTGGCTCTTTCCTCGATATTTATAGCTAAGAATGTAAGGGTAGTTTATCTGTCCG
TTGGTGTTCTTATCTTAAAGGCTCTGGCTGGTGTTTTGATTTGCTTTCAAGGAAGGGGAAAAAAG
AAATCATTTCCTGTGGTGCTTGTATTCTTCTTTTTTTATAGAGGA
Found at i:822905 original size:19 final size:19
Alignment explanation
Indices: 822828--822909 Score: 74
Period size: 19 Copynumber: 4.0 Consensus size: 19
822818 CCCACTTCCT
822828 CGAACTAAATAAGGCGGTA
1 CGAACTAAATAAGGCGGTA
* *
822847 GGACCTAAATAAGGCGGTA
1 CGAACTAAATAAGGCGGTA
*
822866 GGAACTAAACGAAAATAAGGCGGTA
1 CGAACT------AAATAAGGCGGTA
*
822891 CGAACTAAATGAGGCGGTA
1 CGAACTAAATAAGGCGGTA
822910 AGAGCTGAGA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
19 34 0.65
25 18 0.35
ACGTcount: A:0.41, C:0.15, G:0.29, T:0.15
Consensus pattern (19 bp):
CGAACTAAATAAGGCGGTA
Left flanking sequence: Indices 822328 -- 822827
CAACCCTTGAACTATCTCCTCACTCTAAGCACCGTTAAGAGAGAGATTAAGAGATAGAAGAGATA
GAGATAAGAGTTTCTGCCTCTGGGTAATAGAGCTAATCTGGCTGGGACCCTGTAACTATCTCCTC
TCACCCTAAGTACGGGTAAGATAGAGGTATCTCCTGTCCATTCTAGAGTCTCTGCTTTAATCTCT
TCCTGATCTGCTCTCACTTGAAATGTATTCGAGTAAGAGCTAGTTAAGTATAAGCTAGTAAGCCT
GAATCAATGCTTCTAGGCTTTGGGTTGTGTAACCCTTGGCTTTGTTGGGCTACGACTTTGGTTGT
GTAACCCTTGGCTTTGCAATCGTAAGTGAGATAAAGAAGGCAGTGTTAGGCCTATGGTGAACTTT
GCTGTGGTTTACTTTGCTTAGGTATCGCTTTGGTTCGTTAACCTCTTGCTTTGCTTTACCCCACT
TCCTCTTGGTTCGTTAACCCCTTGCTTTGCTTTGCCCCACTTCCT
Right flanking sequence: Indices 822910 -- 823409
AGAGCTGAGAGAAGAGTGTTTGCCTATGAGTAATAGATAAAATTTCCTTTGCATGTCTGTCTGCC
CTCTAGGCTAGGTAAGTATCTCTGGCTGTCTCCCCTCTAGGTAAGTATCTCTGTATGTAATAACT
ATCTGCTCGCGCTAACAAAGAACAGGTAAGGCTCCGCGCTTAAGGTGAGATAGAGAATCTGCTTT
TTCTAATTAATATATGGATACATTTTTATGTCCTCCGGAGGCGCCACATCCTTTAGTAAAATATT
TGACTTCTTGGATGTTTTGTATGTCGTTGATGGGATGATGCTGGCTCTTTCCTCGATATTTATAG
CTAAGAATGTAAGGGTAGTTTATCTGTCCGTTGGTGTTCTTATCTTAAAGGCTCTGGCTGGTGTT
TTGATTTGCTTTCAAGGAAGGGGAAAAAAGAAATCATTTCCTGTGGTGCTTGTATTCTTCTTTTT
TTATAGAGGATTTCCTTTTTATCTTAGATCTAGTCTCTCTCCAAC
Found at i:827078 original size:27 final size:27
Alignment explanation
Indices: 827021--827082 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
827011 GTCTCTCAAG
* *
827021 AAGGTAAGCAAAGGTAAGGTCCTGCCG
1 AAGGTAAGCAAAGGGAAGGTCCTGCCA
* *
827048 AAGGTAAGCGAAGGGAAGGT-CTGGCTA
1 AAGGTAAGCAAAGGGAAGGTCCT-GCCA
827075 AAGGTAAG
1 AAGGTAAG
827083 GCACTCCAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.35, C:0.13, G:0.37, T:0.15
Consensus pattern (27 bp):
AAGGTAAGCAAAGGGAAGGTCCTGCCA
Left flanking sequence: Indices 826521 -- 827020
GGTGATCTAATGGTTGACCCTACGACATGACAGGACTGGTTCTTTGAAACTCCTGACGACCGGAG
CAAGGCTACGGAAGATGTTATGGGTTGATAATGGGCACGGTTGGGGGTCAGGCCGGCCCCCATAA
TCTGAATGGCCTTATGTCATCGGGTAAGGGTGCCGGGGGTTTTACGTGAATGAGTGCCCAAAACA
TAGGTGCCCTTGTGGAATAAGGTAACTGTGTAAGCATGGGGGAGCTCCTGGGAGGTGGGTATGCC
CAAGCCGTAATTCCATATATAAGGAAAGAAAGAATGAGATATCTGTTTATCTACGAGTATTATAT
TCTGGATTATGAAAGCCATCGAGTCAATAATCGAGACGTGAAAGCGGGCAAGTAAAAGCACAAGC
TCCAAGGCAAGCGGCCTTACGAGGGAGGTCTTTTACCTTACCTCCTAGCAGGGGAAAGTACCTCC
GGGTCTCCTGCGGAGCTCTATTGCGGTCCTGGTCCGTCTCTCAAG
Right flanking sequence: Indices 827083 -- 827582
GCACTCCAGAAGGTAAGCGAAGGGAAGGTCCTGACTCAAGAAGGTAAGGTCCCAGGTTGATAAGG
AGATATAAGGTTTACTTCTTTCTTCTTATCTCTCATCTTCTTATCTTTTCTCCTTCTTCCCCAGC
CGGATAGGAGTAAAAACCCAATGTTCTTAGGCAAGCTATTAGGCAAGTAACAACCCATCGATTGC
TCCTCGAAGTACGACTTGATATTTTGTCCTTCCTTTAAGCCTTCCTTTCTTCCTTTATAGGCCAC
CTTCCCACTAGTAAATTTACCATCCCGACAGGGTGAGGAAGCGTTAAGCGGGCTCGATGACCAAA
GAAGGGCGAGGGAACGACTGCTCTATGAAGGGGTAGGGGAAGGTCCCGATACGCCACCTTTTCTT
AGTGAATTTACCCACTTTAACAAGCCATATTCATGCAGATCAATTTAATAACTGATGACTAACTG
ACACGCCACCTTTTCTTAGTGAATTTACCCACTTTTAATACTTCG
Found at i:829806 original size:13 final size:13
Alignment explanation
Indices: 829773--829808 Score: 65
Period size: 12 Copynumber: 2.8 Consensus size: 13
829763 CCAGCTATGA
829773 CTGGCATCGACAC
1 CTGGCATCGACAC
829786 CTGG-ATCGACAC
1 CTGGCATCGACAC
829798 CTGGCATCGAC
1 CTGGCATCGAC
829809 TAAGACTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.22, C:0.36, G:0.25, T:0.17
Consensus pattern (13 bp):
CTGGCATCGACAC
Left flanking sequence: Indices 829273 -- 829772
GACACGAAGTGGTATGGAAGAGGATAGGGATAGCTCGCAAGTCTGGAATGCATTTATTTTTATTA
TTCCCAACGCTGGAAGGGGTTCAGTTACCCGCTTCGCGCCTTTGTTGGTAGTACGAGTAGTATAT
GCATAACTCTAGTCAGCATAAACACCAGTATCGAGGTAGCGGCATCGACTCTTGGATTGACTGCA
AAGATGGAGCATCAACACTTGGATCGACTGCATCAACACCCACCTGGCATTGACTCTTGGGATTA
CCGGCTATCAGCAATGACCTTCATTCAACGACTAGCGACTATCAGCACCTTCGGGCAGCTTTTCT
TGGCTATGATGACTGGCACGGAATACTTGGCACTGACTGCACTGACCAGAGCTTCATTCATGCAC
CGACTAGAGCTTCCATGACTAGAGCTTCTTTCTGTTCTGGCACTGAGAAGAGCTTCATGCACTGA
CCGGAGCTTCTAGGCAATGAGTATCCCAGCCAAGCCCAGCTATGA
Right flanking sequence: Indices 829809 -- 830308
TAAGACTACCAGCATCAAGTGCATTAACTCTTGGATCGACAGCGTGAGTAGCAGCATCTATTCCT
GGCATCAAGTGCATTGATACGTGGCCTCGACTAAGACTCCTGGTAGCAGCTATTGGTGACCGGTT
GGGAATGAAGGGCTATGGGCTGTCAATGATTGGCGTATAACCCTTAACAGGTGCATCGTAAGTAA
TGCATTGTTCATGTCATCCGATCGAGGTAGGAACTAAGGTTCCGTATCGTTCAGTGTGGAGCAGG
TAGGAACCATTGTTCCGTATGTACAACCCCGTAGGGTCCAGTCTCATGGGTCTGTCAGTGCGCCT
ATGATCGGTAGCTCTGATCGGCAAGTCCTCCCGACAAGGCTTCCCCGACAAGCACTTCCCGTCTC
TCTCTCGGCAATGCCAACTGGGTATCGACAAGGACTTCATTCAACGACTAGCGACTATCAGCAGC
ACTGACCGTAGCTTCTAGTCACTGAGTATCGAGCCCAGCATTTGC
Found at i:830359 original size:68 final size:68
Alignment explanation
Indices: 830282--830417 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
830272 TAGCTTCTAG
830282 TCACTGAGTATCGAGCCCAGCATTTGCTAACCGAGTAGCCCAACCGAGCAGCCCGGAAGCTCACC
1 TCACTGAGTATCGAGCCCAGCATTTGCTAACCGAGTAGCCCAACCGAGCAGCCCGGAAGCTCACC
830347 CGC
66 CGC
830350 TCACTGAGTATCGAGCCCAGCATTTGCTAACCGAGTAGCCCAACCGAGCAGCCCGGAAGCTCACC
1 TCACTGAGTATCGAGCCCAGCATTTGCTAACCGAGTAGCCCAACCGAGCAGCCCGGAAGCTCACC
830415 CGC
66 CGC
830418 CATCCAGCTC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.25, C:0.37, G:0.24, T:0.15
Consensus pattern (68 bp):
TCACTGAGTATCGAGCCCAGCATTTGCTAACCGAGTAGCCCAACCGAGCAGCCCGGAAGCTCACC
CGC
Left flanking sequence: Indices 829782 -- 830281
ACACCTGGATCGACACCTGGCATCGACTAAGACTACCAGCATCAAGTGCATTAACTCTTGGATCG
ACAGCGTGAGTAGCAGCATCTATTCCTGGCATCAAGTGCATTGATACGTGGCCTCGACTAAGACT
CCTGGTAGCAGCTATTGGTGACCGGTTGGGAATGAAGGGCTATGGGCTGTCAATGATTGGCGTAT
AACCCTTAACAGGTGCATCGTAAGTAATGCATTGTTCATGTCATCCGATCGAGGTAGGAACTAAG
GTTCCGTATCGTTCAGTGTGGAGCAGGTAGGAACCATTGTTCCGTATGTACAACCCCGTAGGGTC
CAGTCTCATGGGTCTGTCAGTGCGCCTATGATCGGTAGCTCTGATCGGCAAGTCCTCCCGACAAG
GCTTCCCCGACAAGCACTTCCCGTCTCTCTCTCGGCAATGCCAACTGGGTATCGACAAGGACTTC
ATTCAACGACTAGCGACTATCAGCAGCACTGACCGTAGCTTCTAG
Right flanking sequence: Indices 830418 -- 830917
CATCCAGCTCCAGCTCACCATCCAGCAAGCTAACCAGCAGGCCAGCAATAAGCAATTGGATTTGT
TTGGTCAAGAGCCGAACAATTGGAGTCATTATTTATGATTGGAGTTAAGTAGTTGTTAGTGGAGT
TAGTTGGTCTCCAGGCAAGTAAGAAAAGCACCAGCAAGTTGGAGTTAGTTGGGTAAAGGTTTCCA
GGCAAGTGAGTAAGCTCGCAAGTCCCAGGGCTGTTGGTTCGCTGGTGGCCGGCAATCTATAGATC
CTATATTTTTTATAGATATGGGTCGGCCGGTATAGTGAATAGCCACTGATGGCGGCATGGTCTAA
CCGATTGGCCCTGCCCTGAAAGGCAGTAGTATCAAGCTCGGATCGGGTGGCGTCCTGCCTGACCC
AATACACCAAGCCAAGCCCTTCCACCACTGATGAGTTGAGCCAGTACAGTAACGAAGGATTACTG
GGCTAAATAACATATATAAGGAAATGAAGAGAAAGGCAGAAATAT
Found at i:831835 original size:32 final size:32
Alignment explanation
Indices: 831799--831862 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
831789 TTCTTCTGCT
*
831799 TTACCAAGAAGGAGGGATACTCCAGATAGCTC
1 TTACCAAGAAGGAGGGAGACTCCAGATAGCTC
*
831831 TTACCGAGAAGGAGGGAGACTCCAGATAGCTC
1 TTACCAAGAAGGAGGGAGACTCCAGATAGCTC
831863 CTCTCTACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.28, T:0.17
Consensus pattern (32 bp):
TTACCAAGAAGGAGGGAGACTCCAGATAGCTC
Left flanking sequence: Indices 831299 -- 831798
AACTAAGCCCTTGCCCTTTCACAAGCCCAGCTAGTAGGGAGCGAGGGATAACTATCTATAGTAGG
TAGGGAGGAATAACTCCAGAAGCCAAGCCCCTCTCACGAGAAGAAACCCAGCTAGTAGGGAGCGA
GGGATAACTCCAGCTAGTATGGTCTGTCAAATGTCACGAAGGATATCTAAATAAAAGCCCTTTAA
CGAGGGATAAACAAACCAGTAACGAAATATATCTAATTACTTACGAGATTATAACCTTTCACGAA
GTTATATAAGGTCCTGATAGATGTCATCTAAGGTCCTGACTCACCTAGTAGATACGGAATGGAGC
TTCCTACTGAACGACAGATTGTTCACTCACATAGGAAGGAGTTTGTTAACACTTGGTTACGTTTA
CTTTTAGTAAAGGCTTGCTTTCACACGTCAGACTTCTGCGAGTTAAGGCTTGCCGTGTTGACCTG
CCCTACTGTGAACTACTGCCTGAACTACTGTATACTTCTTCTGCT
Right flanking sequence: Indices 831863 -- 832362
CTCTCTACCACACCACTTATGCATGCGTATGTATCGCATGCTTACCGCTGATGCTTACCACCCCT
TGATGACCTGCTTACTACTATACTGCTGCTGCTTACCACCTCTGCCTGCTGACTACCTCTTGATT
AAAACCACTTATTATATATTGACCACTGGCTTTCAATACGTTACGCCTTACCCATCTACGAAGCC
CAAAGCCTTCTACGAAGCCCCAGAGCCTGGAATTATTGGGTGGGAAACCCGAACGAAAGAGATCT
CCTGCCTTCCTTCCTTTTCACGCACGAAAGAGAACGTACTTGTGGGGAAGCAAAGGCCCCCTGGC
AGGCATAAGAATGAAGTACTATTGCTTACCTATCTTTTTTTTCTTGTGGGGAAATGCTCTAGAAT
AATTCTATTGCTTACCTATCTGGCTTGGCTGGGCGGTCTGATGCATGCCTATCTTTCGGGGGTCA
GAACAAAATACTACTTTCTTCCCTCAATCGCTATCTCAGGCTTTG
Found at i:834133 original size:12 final size:12
Alignment explanation
Indices: 834116--834178 Score: 65
Period size: 12 Copynumber: 5.1 Consensus size: 12
834106 TTACAGCTCG
834116 TAAGGTTACAGC
1 TAAGGTTACAGC
*
834128 TAAGGTGACAGC
1 TAAGGTTACAGC
* *
834140 T-CGGTAGTGCAAGC
1 TAAGGT--TAC-AGC
834154 TAAGGTTACAGC
1 TAAGGTTACAGC
834166 TAAGGTTACAGC
1 TAAGGTTACAGC
834178 T
1 T
834179 CATTAACAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
11 3 0.07
12 28 0.68
13 3 0.07
14 4 0.10
15 3 0.07
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (12 bp):
TAAGGTTACAGC
Left flanking sequence: Indices 833616 -- 834115
ATAAAGACAACCCAGAATGTTAGGGCAGCCACTACTATTGTAAGGGTCGGGCCGAAAAGAGAGGT
CCTACTCCTTATTTAAGCAGATAATAAGGTGGCTGCGGTAGCCCCCTTCGTTGACGCCTGCCTTT
AGAGCCATAATTAGGGAGGGTAGTTTATAGATGCCCCATATTTTTTCCCCTCTCACATTGAATCA
AGTGCGCCCCACTACAACCACTGGCATCATATATAATAGGGCAGGGGGCAGGGCGGGGTGAGGCC
GAGCACGAAAACCACCCGCCCAACCCAAACCAAATAGGGGTGATTATAGTATAGCAGTAGTAGCC
CCCCCCACAATAAATAGGGCTTAGTTCCACACTCCTCCCTCCGCCAGATGGAGATTTAGAAATCT
GAAATAGCCGATCAATTAAGGTTAAAGGTCGGGCTTGGAGTTAAAGGGCTTGGAGTGACTTCCCC
AGATAAGGGCCTAGAGGACAGGGCTTGAGATAATGTTACAGCTCG
Right flanking sequence: Indices 834179 -- 834678
CATTAACAGCTCTATTATATTCTTTAGTTAGGGCTTGCAGGTGGTGGGCGCTTGCTTATGAGCTT
GTCAGTTGCGGGCGCTTGCTTATATTATCTGTTCTTTCTCAAAACTATGCCTGAGTAATCGTTAC
GATAGATAGGTGTGTTATCGCCTAGTGAGTGTAAGGAGGAATCCGGGTGTGGGCAAAAGGTATTG
TTCGGTGGGTGGGGAAAGGTATAATAGGTCTTCCCCTATATTATGGATGGAAGGAGAGGCTTCGT
GTTCTAATAGGTATTCTCCTAGACGTTCACAGCTGCTCCTAGACGTTCTAGGTCTTCCCCTATTT
GGAGTTACTTCTAATATAGTTTATCCATGGTCTTGTTAGGTGTGTTATCACCTCGTGAGTGTAAG
GAGGAATCCGAGTGTCGGCCAAAGGTCTTGTTTCGGATGGAAGGAGATTTCTTAATGGCCATGAG
ATTCCCTTCGGATACCTATGGGGTATTGATATCTTATTTATTTGG
Found at i:841526 original size:17 final size:17
Alignment explanation
Indices: 841487--841536 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 17
841477 TTAGATAATC
841487 GAAGGCTAGAGAATGA-
1 GAAGGCTAGAGAATGAG
841503 G--GGCTAGAGAATGAG
1 GAAGGCTAGAGAATGAG
841518 GAAGGCTAGAGAATCGAG
1 GAAGGCTAGAGAAT-GAG
841536 G
1 G
841537 GCCCAGAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 13 0.43
15 1 0.03
16 1 0.03
17 11 0.37
18 4 0.13
ACGTcount: A:0.38, C:0.08, G:0.42, T:0.12
Consensus pattern (17 bp):
GAAGGCTAGAGAATGAG
Left flanking sequence: Indices 840987 -- 841486
AGGAGGATCTCATTCGAAGATCAATTGCATAGCAAACTGAATCCGCCAGCTAACTCACAATCAAT
ATTGAATGAATTGGGTTGACAGCCCCGAACTAAAGCTTGTCCACGCAGGCAGGCGTAATTAATTA
GTATTGTGTGTTACGGAAACCACCATTCCGAAGATCTATATCTATAAGGGGGGGAGGGAGAGCAG
CTGTGGACTGCTGTCCACCGAAATATCCATCACACACAAGGTTATACGGCGTCCTCGATGGATGT
AGAGCTCCCTTACCTTCTAACTCTTTTTTTTCCCGGCTCGGTAAGACCTTGATAGTTGGTATAAG
AAGCGAAGCCCTACACACCAGTACGGGGCAGCAATGTGATGTTTACCTCGCGTCTACCTCGCCTT
CGAAGTAAGTAATAAAGGAAAGGCTGCCCTCAGATGATATTGCCCTCAGATGACAGGATAGATTT
CTTTATTCATTGGTCAAGGAAGTTACTGTCTCGCGTTAGATAATC
Right flanking sequence: Indices 841537 -- 842036
GCCCAGAAAGAATCAAATACGAGGGCTGGGAAAGAATCGAGGGTTAAGGGGAAAAGATATATTTA
TTAACTGGGGCTTGTCTCGCGTTACTGACGGCTCTCCTGCTCCCCTGCTTCGTTAAGAACCAAGT
TAACCTGGCTTTTCACCTGGATAGCCTTTTCACCACGTTACCCAAGTTCACCGCTAAGTAGCCGG
TAGCCATTGTTCACCAAGTTAAGAACCAAGTTAACCAAGTTAACCAAGCCTTTTCGTTCGCCTGG
AAAGATTGATTCTCCGCATTTGCAACCTCCGCTCCCATCCCAACCCAACCCGACCCTTGCTTGCC
CGCTTTAATGCTTTAATGCTTGCCTGCTTGGTGGTAAATCCAGTCGTTGACTCAGCAGCATCCTT
ACTGGTACCAGTTTATTTCCCGGCAAACCTACCCTTGGAGGCGTATGCTTTTGTTCCAAGGAGCT
TTGTTCCGAAATAACCTGCTGTTTTAAGGACCTACCTATATACCG
Found at i:841769 original size:9 final size:9
Alignment explanation
Indices: 841755--841779 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
841745 CCAAGTTAAG
841755 AACCAAGTT
1 AACCAAGTT
841764 AACCAAGTT
1 AACCAAGTT
841773 AACCAAG
1 AACCAAG
841780 CCTTTTCGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.24, G:0.12, T:0.16
Consensus pattern (9 bp):
AACCAAGTT
Left flanking sequence: Indices 841255 -- 841754
CTTACCTTCTAACTCTTTTTTTTCCCGGCTCGGTAAGACCTTGATAGTTGGTATAAGAAGCGAAG
CCCTACACACCAGTACGGGGCAGCAATGTGATGTTTACCTCGCGTCTACCTCGCCTTCGAAGTAA
GTAATAAAGGAAAGGCTGCCCTCAGATGATATTGCCCTCAGATGACAGGATAGATTTCTTTATTC
ATTGGTCAAGGAAGTTACTGTCTCGCGTTAGATAATCGAAGGCTAGAGAATGAGGGCTAGAGAAT
GAGGAAGGCTAGAGAATCGAGGGCCCAGAAAGAATCAAATACGAGGGCTGGGAAAGAATCGAGGG
TTAAGGGGAAAAGATATATTTATTAACTGGGGCTTGTCTCGCGTTACTGACGGCTCTCCTGCTCC
CCTGCTTCGTTAAGAACCAAGTTAACCTGGCTTTTCACCTGGATAGCCTTTTCACCACGTTACCC
AAGTTCACCGCTAAGTAGCCGGTAGCCATTGTTCACCAAGTTAAG
Right flanking sequence: Indices 841780 -- 842279
CCTTTTCGTTCGCCTGGAAAGATTGATTCTCCGCATTTGCAACCTCCGCTCCCATCCCAACCCAA
CCCGACCCTTGCTTGCCCGCTTTAATGCTTTAATGCTTGCCTGCTTGGTGGTAAATCCAGTCGTT
GACTCAGCAGCATCCTTACTGGTACCAGTTTATTTCCCGGCAAACCTACCCTTGGAGGCGTATGC
TTTTGTTCCAAGGAGCTTTGTTCCGAAATAACCTGCTGTTTTAAGGACCTACCTATATACCGACT
CTGGTACTGGACTTGGAACAGCATCTCGGTCTCGATCAACAGGAACTGCTGCGTAAATTGGTGCT
TCAACTGATGATGGCGGGACTGTCTAAGGTGCTTCCTTCTCTCCTCCAGCTATCTTTGCTTCTGC
GAGCTCGGATGCTAGGAAATAATCTGGAACGGGCCATGCCCTTGCTTTCTCTGCACCTGCCTTTT
CGGTGCTACCCTTACTCCTTACTTTTGATTGCCAGAAGTCTTAGT
Found at i:844953 original size:14 final size:15
Alignment explanation
Indices: 844915--844965 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
844905 ATCCACCAGC
* *
844915 AGACTCTACAGGGCA
1 AGACCCTACAGGACA
844930 AGACCCTACAGGACA
1 AGACCCTACAGGACA
* *
844945 ATA-CCTACAAGAGCA
1 AGACCCTACAGGA-CA
844960 AGACCC
1 AGACCC
844966 ACCAAAGCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 8 0.28
15 19 0.66
16 2 0.07
ACGTcount: A:0.39, C:0.31, G:0.20, T:0.10
Consensus pattern (15 bp):
AGACCCTACAGGACA
Left flanking sequence: Indices 844415 -- 844914
AACCGATGAAGCAACTCGATCCGCATATAAACAAAATATGAATATGTAATGAGCTATCGAACTAA
AGAGAGATGTGGGCACGGGAATTGGAACGTAAACCAATACACAATAGATCATCGCTTGCAGCAGC
TTGCACAGCGGATGAACAAGTGGTTTTAATGATAGGTACCTAGGCAGAGATAGAGAAAGCGGCAT
ACCTTATAGTTAGAGATCTAGATCCATACCCCGCAGTGAGTGGGGAAGGCAGCAGATCCAGGTCC
CTTTTACCTATCAGCAGACGCAAAATCGAGGTGGCAAAGGCATAAGCACCACCAATAAAGGCGGC
TAGAGCACGGACATAGGAGGTAGCTAGACCAAGTCCATTACCAGAACCACCAGCAGCAATAGATT
CTTTTGATTATACTTTTTATTACGCTGTTAATTCAGTAGATGTTGAGTCGGATGATCCAGTCGAT
GAAGCAGTCGGTGAAGCACGCAGAGGCAGCAATAGATCCACCAGC
Right flanking sequence: Indices 844966 -- 845465
ACCAAAGCCATTCTCACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAGCAGCACTAGCACC
ATCACTAGTATCAGTAGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCCCGGTATCCCAGCC
CAGCAATCGATTCCATCCTGCGACTTAATTCTACATGAAACACATAGCTTAGATAATAAACTATA
TAGAGCATATACTTATAGGCGTAGAAAATACAATATCTCTGGTGATGCATTTTTCTCCGGTACTC
GCTGGTAGGCCATGCCAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCTGGTAGGTGCGATC
CAGGTGTCGATCCCAGGAGTCGATCCCACTACTCAATGCCAAGAGTCGACCCAGGTGTCAATCCA
CTCAATGCCAACCAGTCATTGCCTCAGGGTGCGGCCTTGCCGGGAGGCCTTGCCGGGAAGCCTCA
CCAGGAGAACTATAACATAGCACAATACCTTGACCCTCCAACTAT
Found at i:845312 original size:13 final size:13
Alignment explanation
Indices: 845286--845318 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
845276 CTGGTAGGTG
*
845286 CGAT-CCAGGTGT
1 CGATCCCAGGAGT
845298 CGATCCCAGGAGT
1 CGATCCCAGGAGT
845311 CGATCCCA
1 CGATCCCA
845319 CTACTCAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.18
Consensus pattern (13 bp):
CGATCCCAGGAGT
Left flanking sequence: Indices 844786 -- 845285
CCACCAGCAGCAATAGATTCTTTTGATTATACTTTTTATTACGCTGTTAATTCAGTAGATGTTGA
GTCGGATGATCCAGTCGATGAAGCAGTCGGTGAAGCACGCAGAGGCAGCAATAGATCCACCAGCA
GACTCTACAGGGCAAGACCCTACAGGACAATACCTACAAGAGCAAGACCCACCAAAGCCATTCTC
ACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAGCAGCACTAGCACCATCACTAGTATCAGT
AGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCCCGGTATCCCAGCCCAGCAATCGATTCCA
TCCTGCGACTTAATTCTACATGAAACACATAGCTTAGATAATAAACTATATAGAGCATATACTTA
TAGGCGTAGAAAATACAATATCTCTGGTGATGCATTTTTCTCCGGTACTCGCTGGTAGGCCATGC
CAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCTGGTAGGTG
Right flanking sequence: Indices 845319 -- 845818
CTACTCAATGCCAAGAGTCGACCCAGGTGTCAATCCACTCAATGCCAACCAGTCATTGCCTCAGG
GTGCGGCCTTGCCGGGAGGCCTTGCCGGGAAGCCTCACCAGGAGAACTATAACATAGCACAATAC
CTTGACCCTCCAACTATAACCTCGAACCTCTACCCTTGATCTCTTCACCTCACATAGCTCTGATC
ATCGCCGGTAGTCATTGCTTGAAGGTCATTGCCACTAACTAATAGCCTTTCCTTTTTGATTATAG
CTAGTCATAACCTGTTTTCATTGCCGATATAGCCAGTTGTCATAGCCAGTCTCATTGACAGCAGG
TGAAATGGAACCATAGGTATCTACCCTACTCTACCTCTTCCTCGAACCTCGACGGAGGAATAAAC
ATAGCCCTCGACCCTCTCATTAGATCTTTTTATTTTTATAAAACAACTTCAATTAATAAAATCAA
TTGTGTCTCCCTGCTCCTGCTTCACCTCCTAATCGGGATCAAATC
Found at i:845404 original size:13 final size:13
Alignment explanation
Indices: 845388--845418 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
845378 CTCAGGGTGC
845388 GGCCTTGCCGGGA
1 GGCCTTGCCGGGA
845401 GGCCTTGCCGGGA
1 GGCCTTGCCGGGA
*
845414 AGCCT
1 GGCCT
845419 CACCAGGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.32, G:0.42, T:0.16
Consensus pattern (13 bp):
GGCCTTGCCGGGA
Left flanking sequence: Indices 844888 -- 845387
CGCAGAGGCAGCAATAGATCCACCAGCAGACTCTACAGGGCAAGACCCTACAGGACAATACCTAC
AAGAGCAAGACCCACCAAAGCCATTCTCACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAG
CAGCACTAGCACCATCACTAGTATCAGTAGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCC
CGGTATCCCAGCCCAGCAATCGATTCCATCCTGCGACTTAATTCTACATGAAACACATAGCTTAG
ATAATAAACTATATAGAGCATATACTTATAGGCGTAGAAAATACAATATCTCTGGTGATGCATTT
TTCTCCGGTACTCGCTGGTAGGCCATGCCAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCT
GGTAGGTGCGATCCAGGTGTCGATCCCAGGAGTCGATCCCACTACTCAATGCCAAGAGTCGACCC
AGGTGTCAATCCACTCAATGCCAACCAGTCATTGCCTCAGGGTGC
Right flanking sequence: Indices 845419 -- 845918
CACCAGGAGAACTATAACATAGCACAATACCTTGACCCTCCAACTATAACCTCGAACCTCTACCC
TTGATCTCTTCACCTCACATAGCTCTGATCATCGCCGGTAGTCATTGCTTGAAGGTCATTGCCAC
TAACTAATAGCCTTTCCTTTTTGATTATAGCTAGTCATAACCTGTTTTCATTGCCGATATAGCCA
GTTGTCATAGCCAGTCTCATTGACAGCAGGTGAAATGGAACCATAGGTATCTACCCTACTCTACC
TCTTCCTCGAACCTCGACGGAGGAATAAACATAGCCCTCGACCCTCTCATTAGATCTTTTTATTT
TTATAAAACAACTTCAATTAATAAAATCAATTGTGTCTCCCTGCTCCTGCTTCACCTCCTAATCG
GGATCAAATCAATAAATCTTCCATCAATCATTCCTTCAACGCCGTCCCTTCCTTGTCCCTTTCCG
TCAACATGTCTGTTGGCTGCCCTCCCTCCGTCGGGGTTATATAAG
Found at i:846554 original size:22 final size:22
Alignment explanation
Indices: 846524--846585 Score: 106
Period size: 22 Copynumber: 2.8 Consensus size: 22
846514 TTCCTTCTGT
* *
846524 TGCCCTACTTGGACTGTGTGGG
1 TGCCTTACTGGGACTGTGTGGG
846546 TGCCTTACTGGGACTGTGTGGG
1 TGCCTTACTGGGACTGTGTGGG
846568 TGCCTTACTGGGACTGTG
1 TGCCTTACTGGGACTGTG
846586 CGGGCTGGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.10, C:0.21, G:0.37, T:0.32
Consensus pattern (22 bp):
TGCCTTACTGGGACTGTGTGGG
Left flanking sequence: Indices 846024 -- 846523
GCCATCCCGCTCCTTTCCTTCTTCATCTCCCGGCAGAATACTACTCCCGGTTGTCATAATCCAAA
TCATCCAGCTCCTCAATCAATCAAGTAAAAGCCCATCCCGGAAGACCTGTCTTGTAAGCGCATCC
CCCCGTAATACTGCCCCGTACACCCCTCTAAGAAGACTGTATTTCTCAATCAAATAAATCACTCC
TCAGTGGGCTTGGCAAAAGGGTGAAGGCATCTATCTGTTGTCCTTCTGTTGTCCTTGTTGAGGTG
GGCGTGAGGTTAGGCTAAAGGTAATTTGCTAGAGGTGCTAGGCATCTGTTGAGAGGTTACAGGTT
ACAGGCTGATAAGAGGCTCAAGGCATCTGGTGAACGGCTTAGTTCGGGGCTCCTTCCCACCCGGT
GAAAGTCTAAAGGTGAAAGGCCCCTGGTGAAAGACAAAAGGTGATGGTTGGGTCCCCACGGTGAA
GGTTTTTTTGCTAAAGGTGACTGATGATAGGCTGATTCCTTCTGT
Right flanking sequence: Indices 846586 -- 847085
CGGGCTGGCTTTTCAAAAGGTGAAGGCAAAAGGTGAGAGGTTACAGGCTGACATCTATGGGATTT
GGCTTAAGGGTTTCAAGGTGAAAGGTTTGTGTGATACTTTCTTCCTTTAGCCTTTTTTTTAACCT
TGAGCCTCACACCTTCAACCTTTATATGCCGGTACTTATGACTGGTGGTGATCCCAGGGTGGAGG
AGGTACCGATTCACTTTTGCCAATATTGAAAAGAAGTACCAGGTGCACAAACAGGATTGCAGCAT
GCCGAGAATAAGGTACCGTAGGAATAAGGTAACGCACCGGGAAGAAGGTACCGCACCAAACTACT
TTGCTCGTTGGTACCCCTCAACCCCACAAACAACGGACGAAGGAGACATTGTAGCCCGAGGCGGC
AAATCGACAGGCAGGCTCGCTCCCCCCTGGGCTCTTTGCCTGGCCGGGAGGATCGGCAAAAGGGG
ACGGCTTTAAGGCCACTCTATGAAGTGAAGTCTCATGTTAAATAA
Found at i:846893 original size:19 final size:19
Alignment explanation
Indices: 846866--846902 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
846856 AGGTACCGTA
*
846866 GGAATAAGGTAACGCACCG
1 GGAAGAAGGTAACGCACCG
*
846885 GGAAGAAGGTACCGCACC
1 GGAAGAAGGTAACGCACC
846903 AAACTACTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.24, G:0.32, T:0.08
Consensus pattern (19 bp):
GGAAGAAGGTAACGCACCG
Left flanking sequence: Indices 846366 -- 846865
TCAAGGCATCTGGTGAACGGCTTAGTTCGGGGCTCCTTCCCACCCGGTGAAAGTCTAAAGGTGAA
AGGCCCCTGGTGAAAGACAAAAGGTGATGGTTGGGTCCCCACGGTGAAGGTTTTTTTGCTAAAGG
TGACTGATGATAGGCTGATTCCTTCTGTTGCCCTACTTGGACTGTGTGGGTGCCTTACTGGGACT
GTGTGGGTGCCTTACTGGGACTGTGCGGGCTGGCTTTTCAAAAGGTGAAGGCAAAAGGTGAGAGG
TTACAGGCTGACATCTATGGGATTTGGCTTAAGGGTTTCAAGGTGAAAGGTTTGTGTGATACTTT
CTTCCTTTAGCCTTTTTTTTAACCTTGAGCCTCACACCTTCAACCTTTATATGCCGGTACTTATG
ACTGGTGGTGATCCCAGGGTGGAGGAGGTACCGATTCACTTTTGCCAATATTGAAAAGAAGTACC
AGGTGCACAAACAGGATTGCAGCATGCCGAGAATAAGGTACCGTA
Right flanking sequence: Indices 846903 -- 847402
AAACTACTTTGCTCGTTGGTACCCCTCAACCCCACAAACAACGGACGAAGGAGACATTGTAGCCC
GAGGCGGCAAATCGACAGGCAGGCTCGCTCCCCCCTGGGCTCTTTGCCTGGCCGGGAGGATCGGC
AAAAGGGGACGGCTTTAAGGCCACTCTATGAAGTGAAGTCTCATGTTAAATAAAACAGGATGCCG
CCCTTTCCCCCTTCATCAGCTAGAGAGAAGGACCACTTCACCACTGGTCGAGAGGAGAAGGAAGT
CCACCATTACACCCCGAAAAAGAAGAAAGAGACCAGTCTCCTAAGCTCTCCATAGGGTAAGGTAA
GTTCCATGTTTAACTTTTCCAATTTCATAGGGTGATCCTTAGCACCCATTCTCTAAAGAAACAAC
CCGTTTTGAATCCATGGTGTTTGGTTGGGACAGATTTAAAAACTTCTCTCGTTTGGGGCGTTTTG
CCTTAGTCACAACCTCATTTTTAGGGTTTCGATCCATCCATCGGG
Found at i:847647 original size:19 final size:19
Alignment explanation
Indices: 847600--847648 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
847590 TTATACTCGC
*
847600 CATATCTACGTGAGAATCA
1 CATATATACGTGAGAATCA
* * *
847619 TATATCTACGTGAGAATCG
1 CATATATACGTGAGAATCA
*
847638 CATCTATACGT
1 CATATATACGT
847649 CCTTGCCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (19 bp):
CATATATACGTGAGAATCA
Left flanking sequence: Indices 847100 -- 847599
CTTTCCCCCTTCATCAGCTAGAGAGAAGGACCACTTCACCACTGGTCGAGAGGAGAAGGAAGTCC
ACCATTACACCCCGAAAAAGAAGAAAGAGACCAGTCTCCTAAGCTCTCCATAGGGTAAGGTAAGT
TCCATGTTTAACTTTTCCAATTTCATAGGGTGATCCTTAGCACCCATTCTCTAAAGAAACAACCC
GTTTTGAATCCATGGTGTTTGGTTGGGACAGATTTAAAAACTTCTCTCGTTTGGGGCGTTTTGCC
TTAGTCACAACCTCATTTTTAGGGTTTCGATCCATCCATCGGGGCACAGAAATGGATTTTCTTGT
TACTAAACTATACCCTTTTGGAACGTTTCTCTCTGGCCAGGATTCATTGGGGAGTTTGCATTGGT
TACAGGAGGTCGTCATTGCCGAGAGACGCAAGTAAGTGTGCCTGGGTTATTCGCTCCCGATTCCC
TAGTTTATGCCCCGATTACCTTGTTACTTTCCATGTTATACTCGC
Right flanking sequence: Indices 847649 -- 848148
CCTTGCCATTGTAAGAATTTGTAATCTATGCAACCTCACCTTTCACCTTTTGCCTTGAACCTTCG
ACAGATGCCAGGCCCAACGAGTACAACAGAGGAAGCAAGTAAACGCCTTTGAGCCGAAGAAGTGT
GAGAGAAGGTGAGCGGAAGATCCAGAGTTTAGTTAGAACAGAATCACTCGCATCTATACGTTTAA
CTTTTCCATTTTAACAAGAAAAAAATCCATCCCACAACCATCCATATCTAAGAAATCTCTACTAC
ATCTCTAGCTCTCCATGGGTTGAATAATGCGCCATTGAAAAAGAAAGAAAGAAATAAGAACTACT
TCTAAGAGCGAGAAGAAGCTTCTTATTGTCTCCTTTTCAAATAGGAGAAGACCTAGCTGGGAAAC
CTAACCTTATATGCACAATCCGAAGCCGAGAGGAAGGCTGAAGCCGATAGGAAGGAGAAGAAAAG
AAGTTACCCCATTGTTTAAACCAGAAGACATTGGTTGGAGTTTGG
Found at i:850683 original size:13 final size:13
Alignment explanation
Indices: 850665--850690 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
850655 TCGGGCCATA
850665 TTATACGCACGCT
1 TTATACGCACGCT
850678 TTATACGCACGCT
1 TTATACGCACGCT
850691 CTACTGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (13 bp):
TTATACGCACGCT
Left flanking sequence: Indices 850165 -- 850664
ATCTGTAATGGAGATCACATTGGTAGGGATATAGGCCGACACGTCTCCAGCTTTTGTTTCAATGA
CGGGTAACGCGGTCAAGCTACCCGCACCTGTCTGGTCCGATCGTTTAGCGGCTCTTTCTAATAGA
CGGGAATGTAACTTGTTCACCCGTGTCGGTTTGGGGTACGGTTAGTTCACCGGGAGGATCGCCCT
CCCAATTCGAAGTTGTTTCCTTGAAGTTGAAACCCTAAGTGCGCTTTCGCATTCATTCTATTTGG
TTTCCCCTATTTGATTTCAAGAACGGCTCTTGGCGTTGCAAAGAGGCTCGATCACTTCCTTTTCC
ACTAAGCGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTCTGGATCTT
AGCACCCAAAGTCTGTCTGTACGATTGATTAAGCCTGTACTCTTTGTTTCGTTGGGGTTGGTCAA
GCTTTGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATA
Right flanking sequence: Indices 850691 -- 851190
CTACTGAAATAGATTTATAGAAAACCAGCTATATCCGATCCTCGACAAAAGGAGAGGAAGCGTCC
TTACTTATCAATGCCCGGGCATCCATTCTATACTGGTTTCTAATAAAACGAACACTACTAAGGAA
CGGTGACTTGCGCTATGGCCTAGGCGCTCCCCTTCGTGCTTTTCGCTATTATTGGACCAGAAATA
GATTCGAAGCCGATCCGTTTCATCATCGATTTCGCTTTAGCAGCTGCGCGTCTCCCTTTCTTTTA
TATCTCGATTCGGGCGGGTGACGCATCGCATATTCGAGATGACGCTCTTGCGATAAGAGTCAATT
CGTTTTATTTACGTAATTACGCAATCTTCAAATATCGAACGGTAAGCCAGATGCTTCGCGAACCA
ACCATATTCCGGAGTAGTCCGGTGCATTCCGTTGCACTTCCATAACCCTCGTTAAGGGGCGCACT
CCGATACCGTTGATGTCCGATAGCTTTGATAGTAATGGCTGGATT
Found at i:857865 original size:17 final size:17
Alignment explanation
Indices: 857843--857875 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
857833 GCATCTGCAC
857843 CTGTCTCTCGTCGACCG
1 CTGTCTCTCGTCGACCG
857860 CTGTCTCTCGTCGACC
1 CTGTCTCTCGTCGACC
857876 ACGGGCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.42, G:0.21, T:0.30
Consensus pattern (17 bp):
CTGTCTCTCGTCGACCG
Left flanking sequence: Indices 857343 -- 857842
TATTCCTTCATCCGGTAACGCCCCTAACCAATCTGTAGTCCATCGATCAATTGATAACTCGATTG
TTTCACCCCACCCCAGCAAGAATAGAGAAGAGAGACTATCAATCGATAGACGGACAGGTTTCAAT
AGAGAGATCTCAGGAGGGCAGGTAGCGAGATAGAAGAGATCAGGGGGTAAAGATAGATAGACGGG
CAAGAAGATCGATCCGGGTTTCAATCAGGTCTCCGGTTCGGTCGCAAGGTCGATGAAGGCAGTGA
GTATGCTACTAAACATTGCCAATGCATGAGTAGCTGCAGTGACTGGCACTGACAAGAGCTTCTAG
CAATGAGACTGAAAATGCCAAGCTGCACCTTATAGCTCTGATTGACAACTGTACATGACTAGCGA
CTATGACTCTTGGATCGAGTATCAGCATCGAATAGCCGCATCGACTGTTTCTTGGATCGACACCT
GGATTGACGCCTGGCATCGACTGCATTGAGTACCGGCATCTGCAC
Right flanking sequence: Indices 857876 -- 858375
ACGGGCTTTGACCTCCTGTCTATAATCGACTATTGGCTGAGCAACTTACGAAGAGAAAGGGGAAG
TAAAGGGTAGGCTGGCAAGGTGAGGTCGGAGGGTAAGTATAGGTTCATTCATAGGCAGCATGTCC
TAGGGTGAAGGATGGCTGAGGCAGAGGTGTCAAAGGATAGTAGTAGTCCCACCAAGAGGTCTGAT
TCTTAGGTTACCAAGGCTAGTCCACCCAAGGCTGAGTGCATTGCATAGGCTGGAGGGTCTAGGGA
TGAGGTTACAAAGGCTAGTCCAAAGTCTGTAGGGGTGAGTTTACTAAGAAAAGCTGAGTTTCAGG
CATTTTCAAAGGAGTCCCAAGGTGCGAAGCAGGCAGTTCCAAAGTCTGATTTCCAAAGGCTATTC
CCACCCGAGTAGGAGGTCTGAGGCATAGGTTTCCCAAGGAGGAGGTTAAGGTCCCCCCAAGGAGG
AGGGCAGAGGCAGGTTATAGAGTCTAGCCATAGGTTGACTTAAAG
Found at i:859302 original size:9 final size:9
Alignment explanation
Indices: 859284--859313 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
859274 ACTCAATACG
*
859284 CCAGCCAGC
1 CCAGCTAGC
859293 CCAGCTAGC
1 CCAGCTAGC
859302 CCAGCTAGC
1 CCAGCTAGC
859311 CCA
1 CCA
859314 CCTGCCTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.23, C:0.50, G:0.20, T:0.07
Consensus pattern (9 bp):
CCAGCTAGC
Left flanking sequence: Indices 858784 -- 859283
AGTTTCCAAAGGCTGAGTGTAAGGTCCCAAGGCGGAGGTCTAATGATGGGTTACCAGGGATAGTC
CCACCAAAGTATGATTTCCCAAGGCTGTTCCCAAGGCGGGAGGGTGGAGGCTGTAGGATGTAGGT
ATGAGTTTAAAAAGGATAGTCCCAATGATAGATTATATCTGTGAATATTCCACGCGCCGTGCATA
ATCACCACCTCACACACAACGACTCGTTAACATGGGCGACATCACTTCTGCGGGAAGGCAAGGTT
CAATCATAAGGCAAGCGGTAGCGACCATAATCCCGAATTTAACCTCATAATTGAGTAACCTCATT
ATTATTGTACATAAAGGATCGTACCTGCATTGTGTAACCAAAAAAGTACCCTAATAGTGTATGAG
GCACGGATTTATATGAAGTTATATTTATAAATTATACGTCTTGTCTACGCCTTTTCCAAGTGGGA
AATTATATACTTAAAAGTGGCCTATCCCATCCAGGACTCAATACG
Right flanking sequence: Indices 859314 -- 859813
CCTGCCTACTACCAAGCTTTGTTAAACCTTCCTAATAATACCTTTACTGCTTCGCTCGAATAATA
TGACCCACCTTACCATATTGGGGGGGACAGCCAACCCCGGGCACCTAAGGCGGGCAAGCACTTTC
CCTTTCCCGAAAGGCACTTTCCCGCCCGACACGAAAGAAAGCTGCGTTTCAACCCTTTTACCCGT
ACCTCGCGGGCCCACCAACACTTGGTTTTATTGCCGCAAGCCCCTTATGGGAACAATCATTAGTT
ACCACATCCCCTTTACTCTCTGCCGGTTTCGGGGCGCCAACTAAATGAACTTGATCCTTTCACCG
GGCGGGGAACTATATCACTCCAGGGAAGGGACCCGGATTGCCTTCACACTGCATAACTCTTTATA
TGATATATACCACCTGCTTTACTTATTAGATCGATCTTATGTACACTTTGGTAGGCAGACACTTT
GAACATCACTATTAATTGAACATCGCTATTAATATGCGGTTTTTA
Found at i:859789 original size:17 final size:17
Alignment explanation
Indices: 859767--859801 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
859757 GGCAGACACT
859767 TTGAACATCACTATTAA
1 TTGAACATCACTATTAA
*
859784 TTGAACATCGCTATTAA
1 TTGAACATCACTATTAA
859801 T
1 T
859802 ATGCGGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (17 bp):
TTGAACATCACTATTAA
Left flanking sequence: Indices 859267 -- 859766
ATCCAGGACTCAATACGCCAGCCAGCCCAGCTAGCCCAGCTAGCCCACCTGCCTACTACCAAGCT
TTGTTAAACCTTCCTAATAATACCTTTACTGCTTCGCTCGAATAATATGACCCACCTTACCATAT
TGGGGGGGACAGCCAACCCCGGGCACCTAAGGCGGGCAAGCACTTTCCCTTTCCCGAAAGGCACT
TTCCCGCCCGACACGAAAGAAAGCTGCGTTTCAACCCTTTTACCCGTACCTCGCGGGCCCACCAA
CACTTGGTTTTATTGCCGCAAGCCCCTTATGGGAACAATCATTAGTTACCACATCCCCTTTACTC
TCTGCCGGTTTCGGGGCGCCAACTAAATGAACTTGATCCTTTCACCGGGCGGGGAACTATATCAC
TCCAGGGAAGGGACCCGGATTGCCTTCACACTGCATAACTCTTTATATGATATATACCACCTGCT
TTACTTATTAGATCGATCTTATGTACACTTTGGTAGGCAGACACT
Right flanking sequence: Indices 859802 -- 860301
ATGCGGTTTTTATCAACCAACATATGTATCCGTCTCGTTCGTGAAGGGCGCCTCGCCTCTCATCA
GGGGAGGACGGCATGAGGATTACCTGATCCCTCGCTAAAGCAACTCGACAGACACAGCAAGGGAG
GGGCTCGAGAGTCCCACACCCAGGGGGAGGCGCATCGATTTTGAAATAAGGTAAAGCGTAATTTG
CACCTACTTAGACCCAAAGTCTACGTCAGATGTCCTACCGCGTCCCGATCATAGAATGTATACAG
TGGTTCGCTTCTAGCCTGACAGGCCAACCTCACCTGTTCTTCCCAACCTAATTACTGGGTTCATA
CACGCCCTTGATAACTGCTCTATAACTGTCCCATCGAAATAGCAGGAATCGGAGTTCTCTCCTAC
CCCACTTGGATATAAAGGAGTTATGATAGGTGTGTCAACCTTGTCAGTAGGCCTTGACTCACCTT
CCTTCGGGCGCACTGCCTACCTTACTCTGAAATGCCTCTGATGAG
Found at i:862160 original size:15 final size:15
Alignment explanation
Indices: 862140--862181 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
862130 GGAATGACTG
862140 TATCCAGTTGTTTAA
1 TATCCAGTTGTTTAA
862155 TATCCAGTTGTTTAA
1 TATCCAGTTGTTTAA
862170 TATCCAGTTGTT
1 TATCCAGTTGTT
862182 GATCCACCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.48
Consensus pattern (15 bp):
TATCCAGTTGTTTAA
Left flanking sequence: Indices 861640 -- 862139
ACCCACATCGATAAGGGTACGGTCCCCACTCCCAAATGGTTCCTTCGAAGCGGCTTCGCACCTCG
TCCAATTGATCAAGCAATAAGGAATACGACCAGCCCGATGCCATCCAGCAATCGATCATGGGGGA
GGAGCAAGGGGCTATGGGAGGTCAAAACCGATTATATTTACATTTTAGCTCCCTGGAAACGCTCT
TTTTTTACCTAATATGAAGAGTAGGTAAATCCCATAAGGTGAAGGCAAGTAAGCATCATTATTGC
ATGCATTCCAAATCCCATTGTTCTGTACGTGGAACCAACCCCCGTAGGGTACCTCTCTTGGATCT
GGCATTGAGTTTCTGACTGTCTGGCTAGGACGAGTGGCTATGATTAGCGCCAATGAGCACTGAGT
AGCTACACTGACTGCCTAGAGTTCTAGCTGCACTGACCAGAGCTTCATTCGTTCATTCATTAATG
CGCACCCCGGGTTCATCAACTGACAAGAGGTTCTAGGAATGACTG
Right flanking sequence: Indices 862182 -- 862681
GATCCACCTGCATTTCTCTTGTCGATCGATTCTACGAGCCCTTTTGGATCTCCTTCGGAGCAATT
TAGGAGGGAAAGTTCTCCGAACAATATATTGGCCCTATCAGCATCGATCATTTTTATTGATTGAG
AGTGTTTACTGCCTGGCCTGCCTTCTCTCTAACTCAACAGCCACGCAATGCAGCGGATGGCGTCC
AAGCACTTATATTGAGGTCGTCCCCGATTCTATCTCTACCGACCGGCTAGACAATGGCTAGACGT
GTGTGTGGCTAGATAGAGTTGGCTAGAACACGTGGCTAGACGTTAGGCTTTACGAAATCACTCGA
GAGCTGGTTGAAAACGAGACTTGACGAACTAACACTGGCTCAATGTCTTCAGGTGGGAACATGGG
AACTCACATAGAAGCCGTTCATCACTCACTGCACAAAGCCCTTCACAGAAAGCTGTTCACAGAAG
CCATTACAGCACACATAGAAGCGATGTCCCAGAATCCATCCGTGT
Found at i:863414 original size:13 final size:13
Alignment explanation
Indices: 863396--863422 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
863386 TTTAAGGTCA
863396 ACTAATGCTATAT
1 ACTAATGCTATAT
863409 ACTAATGCTATAT
1 ACTAATGCTATAT
863422 A
1 A
863423 TGGAATGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (13 bp):
ACTAATGCTATAT
Left flanking sequence: Indices 862896 -- 863395
AACTCTTTATTCAGTTCAGCCGGTATCTAGTAACTAAGCCAGCCAGCACCGAGACCGACACTAAG
CAAGTATCGAGCCAGACACCAAGACAACAAGTAAGCAACCAAACATACACTCCGCACCGAGCTAA
GAAAAGCATCTCACCCAAACCCAACAAGCCCAACTCACAACAGAGAACACCACCTGCAGTCAATA
TATACAGCACCCGGCACTTTGTAATATGGAATTTTTATTACCTGAGAGAACTGCTTCCGGGGCTA
CCTCTGTCATTGGTGGTTATGGGTCATCTCCTATAACTAGATCCGTATCGGCATCTCGATCTCGA
ACTATAGGATCTTAACCTGCCCCCTGGAATATTGTGCTTATACCTGTAGAGAGACTCGTTTCGTT
CTGTGCATGCTCCTACCTTTGCCCCTGCTTCTAGGTCAGTTGCATTTTGGGGACGAGGTAGTAGC
TATTTCAATTGCTATTGATTTGGATCTATTACTGGTTTAAGGTCA
Right flanking sequence: Indices 863423 -- 863922
TGGAATGGATCTTTTTCTACACCTGGGTAAGTAACTAAATTCCCCGTCCTACTAACTTCTGAGTC
AATGAAGTCAACCGGTTCTTTCTCTGCGGGGTGAACTTCACTTGGTCCTTAAGCTCCTACCTTTC
CCATTGCACCCGCCTCTGCTCCCATTGCCTCTGGTTCTAGGTAAATAGGATCAACGGGTTCTTAC
TCAAACCAGTTTAGTCAGTTAACTGTCCCTTCATCAGGAGGTTATGCATTTATATCTGTCTTTTA
TCAAATTTGGCGGTTGAAGGAGCTATATTCCCAACATCCCCTCCCCAGTTGAACCAGCCTTATTC
CCAGGATCAAAAGTCCCAGCCCAAGCATCACCAGCTCCATAAGCTGTTGTTGAAGGAGCACCAAT
TGAACGAGCATAATTACCGGAAAAAGCATTATTTGAACCAGTTGAACCGGTTTCCTCATTCCCAG
GATCATTTCCATAAGAAGAAGGAGCATTACGACCAACAACATCCC
Found at i:868206 original size:16 final size:16
Alignment explanation
Indices: 868182--868222 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
868172 AACGCTTCCC
*
868182 TCAATCAATCACTCCA
1 TCAATCAATCAATCCA
* *
868198 TCGATCAATCAATCCT
1 TCAATCAATCAATCCA
868214 TCAATCAAT
1 TCAATCAAT
868223 TCAGTCTGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.32, G:0.02, T:0.29
Consensus pattern (16 bp):
TCAATCAATCAATCCA
Left flanking sequence: Indices 867682 -- 868181
TAGTTAGTTAGACTCTCCAGAGCGACATTGAGGCTATTTAGTGCTCCCAGGAGATGCGAGTTAGT
TTTTCTCCCAGTCCGTCCCCTTGAGGCTATTGGTTCTTCCCCAGAGCCCAGATATCCCAGTTGAG
GCTAGTTAGTTGTTGTGATTCCCCAGAGGCAAGTGTATAGTTAGTTCTCATCCCCATAGCAAAGA
GAGAGTCTTCCCAGTGTGTGGAGTCCCAGTGTGTGAAAGAAGAAGAGTCCCCAGTGTGTAGTGTG
GAGTCCCGTCCCAGTCATTTCCTAGATAGTTAATATTTTTATCCCCAGAGCCCAGACATACCATT
TGAGGCTAGTTAGTTCTCTCTATTCATGATTATCCAGCCTAAGATGCGAGGTTGTTCCCATCTCT
TCCAATTCTTCATAATATGCAAGTATCACCTGTCTCCACCGAAAGCTACCCCATCACCGACACCT
CTGACATAACCTACATGTCCGACACCTCCGACAACAACGCTTCCC
Right flanking sequence: Indices 868223 -- 868722
TCAGTCTGGCTTTGTCAATCACTCAATGGCTCAATCAATGCTTCGTGAGGGCATGTAAGGCTTCC
TGAAAGCGTGGGATCATACCAAAGCATGGTGGTGTCCTGCTACGCCCCAGCTGGACATTTCATTA
CTACTTTAGGTCTCAGAACATAATCGTATCCTTACAGTTTGAACCCAGCCATGTTTGGGAAGCCA
TCATACCCTTACCCTGACAACTAACTGGTTTCACAAGCTTTAATGCTGACCCTTCCCTTTGTGCC
AGACCCCTTAATTGGGAAAGGCTTGCTTGAGTGGATGGAGTGGGCAGAACATCACTATTTAATTT
ACCCAACTTACCTTAAACTTATGCGCATGCTATCCACTTGGCGTCAACCCTTGATGGATTATATA
CTGGCTCACCTAACAGAACTGAACTTAGATATTGGATGCGCTTGCTTGGGCACTTTCAACTTCAC
TATTGCCACCTACTTTACAGATTTTCTCTTAGATGGACTGGCTTC
Found at i:874523 original size:18 final size:18
Alignment explanation
Indices: 874500--874568 Score: 76
Period size: 18 Copynumber: 4.1 Consensus size: 18
874490 AGCCAATGGG
874500 TTCGATGATTAGACACCC
1 TTCGATGATTAGACACCC
*
874518 TTCGATGATTCGACACCC
1 TTCGATGATTAGACACCC
*
874536 --CGA--A-TAGATACCC
1 TTCGATGATTAGACACCC
*
874549 TTCGATGATTAAACACCC
1 TTCGATGATTAGACACCC
874567 TT
1 TT
874569 ACCTCACCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
13 7 0.17
14 1 0.02
15 3 0.07
16 3 0.07
17 1 0.02
18 26 0.63
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (18 bp):
TTCGATGATTAGACACCC
Left flanking sequence: Indices 874000 -- 874499
GTGCTAGTTGTTTAATATCCAGTTATAAACTTTTAGGGGAAGAAATAAAGGGTCACCCCAGCTCC
GTGCGTGCAGGCTTGAGGGGAAGAAATAAAGGGCCGGACCCGCTACCTGGAAAAGCGCTATCTTT
CCCCCGAGCCCAGAAAGCCAGAAAGCAAGGACAGGTCAGGAAAGCGCTATCTACGAAACTTAAAA
TACCTCACGCTTCATAGAAACACTTCGCCAAATCGGTTCCCTGGGGCATTTAAGGACTTTCCAGG
TCTATGGAGTTATGTCTTCTCCTTATGGACTTATATCCCTGGCTAGTTACCGAAATCATATGAGT
CAATATAAAATAAGTTCGGTAACTAGAGATAGAATAAGGAAAATAGTAAGTTACACAACACCATA
AAAACGCCTTATTTTGATTGAGGGGCTAAAAATAGCAATGGTGTTTTGGAGTTCTTTCTTTTGGG
GTATCGGGTTATGGCCCCGTTGGTCGAGTGTCTAAAGCCAATGGG
Right flanking sequence: Indices 874569 -- 875068
ACCTCACCTAACGACTCATTAGCCCCTTTGACTTTTTTAAAACGCCCTTTTTTAGGGTCCGAGGT
ATCATTCTCATCCGGGCACTAAAAATAGATTTTCTATTTACTCAACTATGCCCTTTCATAAAGTT
TACCTAGGATTCCCAGGTGTCATTGTCAAGCATTGATGCCAATACTCGTAGTCAGGTCATTGCCG
AGAGTCAATCATTACCAACCGGCCCAGTCAGCCGCTAGTCGAGCCAGGTGTTTATGCACTCGATT
CAGGTTTCAATCACTCGATCCAAGAGTCGATACAGTCAATATTGGTATTCATCCAGGTGTTTAGC
CACTCGAGCCAGGTGTTGATCCACTCAATGCCGGTACTACATCTGGCAATGCCAGGTATGACAGG
TTTCTATTTACTCAATACCAAGAGGCGAGCCAACAGTTTCTCAGGTGTTGATCACTCGACGATAA
CAGGTCGTGATTAACTTTATGACAGGACTCGATTACTGGTGGTGA
Found at i:875519 original size:7 final size:7
Alignment explanation
Indices: 875507--875538 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
875497 AGCAGCCATA
875507 CCTATAC
1 CCTATAC
875514 CCTATAC
1 CCTATAC
875521 CCTATAC
1 CCTATAC
875528 CCTATAC
1 CCTATAC
875535 CCTA
1 CCTA
875539 CATCTCTACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.44, G:0.00, T:0.28
Consensus pattern (7 bp):
CCTATAC
Left flanking sequence: Indices 875007 -- 875506
TGATCACTCGACGATAACAGGTCGTGATTAACTTTATGACAGGACTCGATTACTGGTGGTGATCA
CTTGATGCCCGTAGGAGATGCCAAGTTGATATCCCCAGAGGAGCAGGTGCCCATTAGTGCTAGCC
AATACCCAGGAGAACATGCCGTAGATCATGAGAGCCAATAGTTGATGCTGTCAATACAAGAGTCT
TTGATGATACAAGAGTCGATACAAAAGTTTATGCCGCTACTCAATGCTGGTACTTGATCCCAAGA
GTCAGTGCCACTTATAGCTGGCTGGGATACTCGGCTTGGAATACTCTATACACTCCACTCTACTC
CGCTACTAGCTGGGATAATCGGGCTAATCAGCTTAGCTACCGGGATGGGATTGATACTCATTGCA
CAGACATTGGGTCTACGATAGCCCATCAGTAGTGGTCATTGCTTGGAGGTAATCGCAGATAGCCA
ATATAGCCCCAGTCAGTACCAATCAGTCGCATACCAGCAGCCATA
Right flanking sequence: Indices 875539 -- 876038
CATCTCTACCTCGAACTCTAGCTAGAACTCTAACGCTACAAGAATCAGTCAGCAGGGAAATGTCT
CGAATTGATCGATGATGCATTACTTACGATCACCTGTGAAGGGGCGCATACGCCAATCATTGCCA
GCCGATAGACCCTTCAACACAGACCCATGAGAAGGAAGTGAGAAGGAAGGCACACATCACCGGCC
GAGGCTGAGAAGAGACTGTTCATCATCAACGGCCGAGAGAAAGGAGATGCCCCTATTGAGACACC
ATGCCAAGAGAGGTGCCCCTTCACGCCATACCCAAGAGAATAAAATAATGTACTTACCGCCAGAC
AGAGGAGATATAGCCTTTGGATAATCTCATATATAATGCTCGTTACCGCACCTATACCACCTTGA
AGGAGCCTTATTCCAAGCCGCTTATGGCTACTTCAGCATCTTGGGGGCAGGCACTAAGTTGTGTT
GGCCCAGATTCAAAAAAACTCCCATTCCCTATTTTTATTTTGATA
Found at i:877010 original size:25 final size:26
Alignment explanation
Indices: 876964--877020 Score: 98
Period size: 25 Copynumber: 2.2 Consensus size: 26
876954 TTCGCCCAGG
876964 ACATCTTGACGAGAGAAAGGTTCCAAT
1 ACATCTTGAC-AGAGAAAGGTTCCAAT
876991 ACATCTTGAC-GAGAAAGGTTCCAAT
1 ACATCTTGACAGAGAAAGGTTCCAAT
877016 ACATC
1 ACATC
877021 CGCGTTACCC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 20 0.67
27 10 0.33
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (26 bp):
ACATCTTGACAGAGAAAGGTTCCAAT
Left flanking sequence: Indices 876464 -- 876963
GATAAGGTGCTGAGCCAGTTGTTGTATAATAACATATATAATATGCAAGCTGAACAAACCGATCC
ATCTTCCGGGATAGGCATTGATTCACTCTAAACTGAGGAGTATTCCGGGGAGGCTAGTTCCCACT
AAACAACTATCTGCCAAGAAAGGCGTTACCCAGATTCCCTTGATTCCCCAGCAGTCCCCCCAATA
CAAACACATTAAGTACTACTGCCCAGACACGTATCCCAGGAAGGACCAGTACGCGTAAGCAATGA
GGATACCGCCCAGGCCACGTCTAACAAGCAACGCGCCACACAGTACACGTCTACAAGTGTGCCGT
AACCAAACATATAGCTCGAACCCTATACCGAATGCCTTAAGTCTATATACGTCGATACATACACC
ACCATCCCAAGTGTGTTAGGTGCACCAATAAGGAGTAGTGATTAAATTTATTTATTCAATTGACA
GCACACATAGTGGGGGGGTGAGGTGGATTTACTTATTCGCCCAGG
Right flanking sequence: Indices 877021 -- 877520
CGCGTTACCCACTTATGACAACGAGAGAACGAAACTACGCGATGGCATCCTGTTCACCGAACGAG
ACGGGAACAATCAATATTCTATTTGAAGCCCTCCCTTCCATCCGCTCCAATGCTGTAAGGATAGG
CAGTAGGTTGGTGAAGTAAGTGGTGTTAAGAGTAAAGTAGCATACATAGTAAAGGATAAATATTA
AAGGTTCTAAGTGTTGACCCCTACCCCATCATATGATATCTGATCTTATATCATAAGTTCTAGCT
GTAATGAATTAATAAATAGGGCAGTTCCACAATCTCTGCTGAAGTTCCCATCCCAGGATCTCCAC
TAAAGTTCTGGCAGTAGTAGCTCAATTCACAAGAAGGCAGTTCACTCACAAAAGTGGATAGCTCT
ATTATCTCTGAGAGAATCAATCTCGTAGGCTCATGAAATCTTATTAGAGCGTAGCGTGCCTGTTT
TAGATATTGTATATTCTACGTAAATTTGTATAAGCAATATAGAGG
Found at i:878784 original size:17 final size:17
Alignment explanation
Indices: 878764--878804 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
878754 TTCACCCTAA
878764 TTCTACCATCACCCGAC
1 TTCTACCATCACCCGAC
** *
878781 TTCTAAAATTACCCGAC
1 TTCTACCATCACCCGAC
878798 TTCTACC
1 TTCTACC
878805 GATTGTAAGC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.27, C:0.39, G:0.05, T:0.29
Consensus pattern (17 bp):
TTCTACCATCACCCGAC
Left flanking sequence: Indices 878264 -- 878763
TCATACAACTAATTACCGAGGGAGTAGACGACTATCAATGAAACCAACCGGAAGGAATTTCTTTA
TTTCGAAGAGAAGCAAGTGAAAGAAATAAAGGTTTATAAAGGGTGAGGGGAGAAAGGGCTATAAC
TGGGGCCCCCTAACCGGAGGTGTCCCTGGGCCACCCGGATAAAAGACAATCTCATTAGTGATAGT
GATACTTTCCTTCGAGGGGGGATGTTTGTTGAGCGTAGCAGCCGCCCGACCTCAATAAACAGTTC
CTCCTTTTCATCAGGGGTAGATGCTCGTGACCGGGTAGTTGGTTCGCGATTATATCATAAAGCAG
GTAGTTGCTCATGATCATACAGCAGGTAGGCTGATTCATGATCAGAGAGCTCCGGACCAGAGATA
GTTGGTTCGTGAAAACAGGTAGCTCATTAAGAATACAACAGTAGATTGGGTCATGATTAGGGTTT
TCCCTTCAAGGGGCTGGCCTTGAGCCAATACATTTTTCACCCTAA
Right flanking sequence: Indices 878805 -- 879304
GATTGTAAGCTTGATTTGATTGCTTGAAAGGCACAGGTTACAAAGAGCCACTCCTCCTTAGAGAG
CTAATTCACTTGGGTAGCTTCTATGCAAGCTTCCTTTGAATAATCTAAAGCGTTGCTTTCTCCCA
GTGCTGCTACGGAATCAGAGGAATGAGGAACGGTAATAGCCTAAAGCCCGGAACCGCCTATCTTC
AATAGGCGCCTTGATTGCCCAACCTATAGTCGCGGCGGGTATCTAATAAGTTCCGGAAATGAGCC
CGCTGATAACCGGCTCCCCAAATCCTATAAATAATAGCTATCTGCTTGAAATAATATAATATAAA
GCGGGGCTCTCGATTCCTTTCCCCTAGTTAGTTCGGTATCGATAGGGAAGACCTACCTCCCCCCA
GACTTGTGGTTTTCCCCGCCGAGATCCACATACCGATCGCTTCCTTCCATTCGCAGTTTGTTCCC
CCGCCCAGTCGCACCGTTAAGGACACGCACACTTGTTCATTGTGT
Found at i:881494 original size:16 final size:17
Alignment explanation
Indices: 881461--881496 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
881451 TCTTAAGAAT
881461 ACTAATAAGCCCCCATA
1 ACTAATAAGCCCCCATA
*
881478 ACTAATAAG-CGCCATA
1 ACTAATAAGCCCCCATA
881494 ACT
1 ACT
881497 TAGGACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.42, C:0.31, G:0.08, T:0.19
Consensus pattern (17 bp):
ACTAATAAGCCCCCATA
Left flanking sequence: Indices 880961 -- 881460
CATATCTGGCATAACTAGATATCACTATAAACATAGAGATTATCGCCTATATCACTAGACTTATA
TCTATCGGTATACCCAATATGGATAAGACAGGAGCATCGCCCAGCCACCTTCGGATGAGCATCGT
AAGGCGCCTTAGGATTAGCATCGTTGGGTACCATTAGAAAAATAGACACGTTTGCGGGTCCACTC
ACGTATGAGGCTCGATGCTTCGGATGGACCAAGACTCTATGCTAAGGGGTGTGATTGTAAGAGTC
AGTAGTCGGCGAGTGGTTGGCTGATGTCTAGGTAAACGGATTCTTCAACAACATAAAGTTTACCT
ATAACTGATTAAACAAAATCTACTACTGAGTCAAATGCACCTGTAACTGCTCGATCTCAAACCGG
ACGAAGGGAAGCAGGGACTGGAGTGGGAACAGAGTGAAGGAAAGCCGCCTTTGTCTCTTCTGTTG
TTTCCTATACAGCGGGGTATACTGTATAATTGCATTCTTAAGAAT
Right flanking sequence: Indices 881497 -- 881996
TAGGACATCAATCGTACCGCGCTCCGGCCAAGTCCATCCAAAGCTCGTCCTGTAGGCCAATCGTC
CACCTCTGGCGAATCATACACTGCCAAAGCAGCTACCGTAGGCGAATCCAAGACCAGCGGACGGG
GAAACCACAGTTGGCAAACCATCATCATGCGAATAGCCAGGCGAAGATACCTCTTTTAACCATCG
CCAGTCAGAGCATATTTGTATACATATGCCAATATGTACCCGTACATTTATAGGTGGTGCTTCAA
CCTAGAATATTAATCTATAGGCTCTCGATATCGAATAGGTTCTATGGAAGGGTAAACAAGGCGCT
CTGCCTCCTCCTATCCTGTTTGGGGTTATAGGTAAACTTAAAGCGCTTCCTCTGTCGCTGATGGA
TCAATGGGATCTGAATCTCGATCGATAACTGAATCTTATGGATACGAAACCGGAGCAGCAGGCTC
TGGCTCTTGAACATACGAATCAATTGTTTTTTATTAATCAACGGA
Found at i:886161 original size:12 final size:12
Alignment explanation
Indices: 886144--886168 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
886134 ATGGTTTGGG
886144 ACCGGTTGACAA
1 ACCGGTTGACAA
886156 ACCGGTTGACAA
1 ACCGGTTGACAA
886168 A
1 A
886169 TAGGGGAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (12 bp):
ACCGGTTGACAA
Left flanking sequence: Indices 885644 -- 886143
CGACTCTTGGCATTGAGTGATCGACTGCAGCAACTAGCGTTAATTGGTACCTCCTTGCTGGGACT
GACCAGTTGGGTTGTCTCCCGGCTGGGGATGATCTCCTATCGGCTGTAAATTCCCCTCCCCTCCC
TGTGGCAACTGACTTGGAATGACCGGGTGGGTAATGATGGGGCTATCGGTTCACATGCAGACAAG
AAGAAATCGAATCCTGGTATCAACTGCTTGTGACTATCCAATGACCGGCTGGCAGTGAGACTGTA
AACGGATCTGCCTATGACCTGCTGGCAATGAAAACTGGCTATAAGCAATGACTCCTGTAAATCAT
AGATAAACATTATGAAAGGGTATGTTGTCATAAAGAACAAAATCATTTTTAGTGGTCTGATATGG
GATTCGCCCTCCTTCTTAGGTCGTCGGGTGAGCGGCTCGTTCCTCAATGGGTGCACTTACTCCCT
CGCTTGGCAACGTGTTCTCTGCCTGTGTTCCGTGGATGGTTTGGG
Right flanking sequence: Indices 886169 -- 886668
TAGGGGAATCCTGCTCCCTCCAAATCCTCCCTCGAGTTGGATCCAATCAATCAAGTCAATCAAGG
CAGTGCGGCCATTCTGCTCCTGAAACTCCTTCCTCATATCTCGGTTGAAGACTAACGGCAACTAA
CGGCATAATCCAAATCATACAGCTCTTAAACATAATAAATTTGGACTCGGCTCCTCAACAAATTG
TGAATCAACGTAAGTAATAGCAACATTATTATATATCTTGACCGGTTGACGTCTAATGGCTTCTG
TTGGACTTGTTGGATAGAATCAGTAATGCTCGACTCTCTCTGGCAATGACCTTAACTTTGCTATG
AGACTTAAAATGCTTGTCTATCAGCTATGACAACCGATCTATGAGCTATGAGAACAGGCATTAAG
GTAATTACAAAAGGCAATGAGTGTCTATGACTACTGGCTCTATATGGTCCTCCGGGTATTGTCGA
GGGTCTTATCCCGGATATTGGCTACAGGGTATCGGCACTGACTGT
Found at i:889831 original size:13 final size:13
Alignment explanation
Indices: 889813--889846 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
889803 GTGTTCATGC
889813 ACTCAATGTTGGT
1 ACTCAATGTTGGT
*
889826 ACTCAATGTTTGT
1 ACTCAATGTTGGT
*
889839 AGTCAATG
1 ACTCAATG
889847 CCGCTTGTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (13 bp):
ACTCAATGTTGGT
Left flanking sequence: Indices 889313 -- 889812
AGAGCTGCCAATTGTAGCCAGTCTCATAGCAGCCATACATATATTCCCGCTTGCCTAGAGAGATA
TTGATGGCCGGTCTTCCGCAAGGGGCGGCGGTCCCACAGACGGATGGAAGCAGGGAGAGCAAACT
GACATGTAGAAGGGAAGGAAAGGAAGGAAGAATAAGCCTTTTTACGAAATCCTATCGGGACATGA
AAGTGGATTATATTCTTACTGAAAACTATGCCTTTCTCAACAGAACAGCCCTTGAGACCTCGAAC
TATAACCTCGAACTAGACGGAGCCTTAGGGAATAATTTCATTACCTGGGTGGGATAGACGGAGGG
AATGAATTACCAAGCATTATATACGTACGATGATTCACAAGAGGTATAGGAGGTTCATATGCCAG
TCAGACCTAGCCGATGCCAAGAGGTCATTGCCGGACGGTCAGCCAAGAGCCCATCATTGGCGAGA
GCCGCTAGTCGATTCAGGTGTCATACACTCGCCAGGTGTTCATGC
Right flanking sequence: Indices 889847 -- 890346
CCGCTTGTCGATGCACTCGATCCAGGTGTTGATTCAATCGATCCCGTTACTTTATGCGCTCGATC
CCGCTACTCGATAACAAGTGTTCAGTCACTCGATGTCGGGACTCAATACAAGAGTTGATCCCAGG
TCTTGATGATGGTACTCGATGATGAGGTTACTCAATTAAGGCTGGCTTACTCGATCACTAACTGG
CTCATCAATCAACCAATTCTGGCTGGCTCGGACTGGCAGATGGTGAGGGGTTACGACCTGGCTGA
TGGGGTCCAACTGGGAAGAATTTATCCCTCTCGAACCTGGCTGACTATCCTTCACTTTCACTTTA
AACCTTGCCACCTCGTAACGAATGGGATAGCGCTTCAAACTACCTCAATCATTGTAGAGGGCTAT
GGGAGTACCGCGGACATACCCAGATTACAATACCACCTCGTAACGAATGAGATAGGGAGCAAGCC
ACCTCAATCATTGTAGAGGGCTACTGGGATTTCCGCTGGGAGTCA
Found at i:895364 original size:12 final size:12
Alignment explanation
Indices: 895349--895373 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
895339 CTAATGCTGG
895349 GACGAATACGCT
1 GACGAATACGCT
895361 GACGAATACGCT
1 GACGAATACGCT
895373 G
1 G
895374 CTGATTTCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.28, T:0.16
Consensus pattern (12 bp):
GACGAATACGCT
Left flanking sequence: Indices 894849 -- 895348
AGATGGCATGCATAATAAGAAGTTGTTCCTACTCGACGAAACCGTTCAACCAGAGCATCCTCCTT
CGAGGTCTACCTGCTCCCACCACATACATAAGGAAGTTTGTTCTCATCGTATGGGAGTTCGGAGT
TATTCCGTTCCAGCGAACGAACTGGGCCCAGGCAGGATTTCACTGGGATCTCGCTCGTTAGAGGC
ACTATTAAAATAAGGATGCCCGCATAGAGAAATAGAGAAGTTGTTCCTACTCTATCTAATTATGC
ACTTTGGAACCTATCAATCAGCAGATCCTACTGAGAAGAGTTCTTATCTGCGCTCCAGACCAACC
AGCAGCAAAACTAGTAGGTATGAATCAGGAGCTCCCTCCATACAGGAGCTGAAGCGGAAGCGCGG
ATCACCTACCAGCAGCATGGAGTTAAAGGGCATCCTGGCTATACAGAGAAGAGATATACTTTTGT
TGGACGCTGGGACGGACGAATCCGGGACCCTGGGACTAATGCTGG
Right flanking sequence: Indices 895374 -- 895873
CTGATTTCGCCAGGAGTAAGAGGAAGGATGCTGATTAACCCTTCTGATCTCGTAAACCCTTGATT
ATTGCAATGCTGCTACTCCTGCTGATCCCGCTGAAGGGGGATTACTTCCTTAAGCTAGGCTACGC
TACCGCTCAGGCCCTACCTTGTTCTGCTTCTACTGATGCTGGGTCGCTTGGACGAAGGACTACTG
CTCATAACCACCCGGTTTACCTACTATGACTTCGCCTAGCATCTCTTCCAGTTCGAAAGCCAGAG
CTTGTTGATTCAGTCGTTGACCCAGTTATCCAGTTTATCCATTTGTAGTTACCGATATGGATGCA
GAGCTAGTTGACTTATTTTACCCAATGCCAGTAATGGATTCGGATCCAAGGCCATTCATTGGGGA
TCCTTTTCAAGATCCAGCAGCAGCTTACCTATTAGTAGAGGCAAAGGCACCCGCGGTTTATCCCG
TAGCGAGGGCAGGGAAGGCATCCGACAAGCAAGCAGCGGAGCCAG
Found at i:896384 original size:29 final size:29
Alignment explanation
Indices: 896321--896417 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
896311 CAGGGTCCTT
* **
896321 TAAGTCAGGTCCTATAGTGAGTGATTCGT
1 TAAGCCAGGTCCTATAGTGAGTGATTCAA
* *
896350 TTAGCCAGGTCCTATAGCGAGTGATTCAA
1 TAAGCCAGGTCCTATAGTGAGTGATTCAA
* * *
896379 TAAGCC-GGATGCTATAATGACTGATTCAA
1 TAAGCCAGG-TCCTATAGTGAGTGATTCAA
896408 TAAGCCAGGT
1 TAAGCCAGGT
896418 ATTATAGTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
28 2 0.04
29 52 0.93
30 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (29 bp):
TAAGCCAGGTCCTATAGTGAGTGATTCAA
Left flanking sequence: Indices 895821 -- 896320
TTATCCCGTAGCGAGGGCAGGGAAGGCATCCGACAAGCAAGCAGCGGAGCCAGTCGAAGAAGTAG
TTTACCCTGCTGCATAGTCAGCATTCCTTTGAGTTGCAAAGTCAATTTAGTCAAAATGAGAATAT
GTAAAAATGCTTTTCTTTTTTCTCTATTTCATTCTCATTCTTTGGTTGGAAAAGACCTTATTTCT
TTGCTAAAGCGTAATTATTACATATATAAAGAATTACCAGCAGCATAGCCTTACCACCTTTTGCA
TATTACTTACGAGCATGCCAGGCATAAGGCATAACACCTTACTTACAACTCTAGATAAAGGCCAG
GGGATCGCTCGAATTCGTTGACCTTACCTTTATTTAATAACCTCGGACTCATACATTATATATAA
ACCCGCCCTTCTCTATGCTACTCACCCCTACTCAACATGAAGCCCCGCTACCGACACCCCACGAT
CCAATATGTGAGGTATTTGAAGGCAGACAGGCAGACAGGGTCCTT
Right flanking sequence: Indices 896418 -- 896917
ATTATAGTAAGTAAGGTTCGATAAGCCAGCAGGGTGGAAACGATTTATCACTATTGATTGCCTTC
TGACTTTGGATTCGACCTTACACTTCCTTCTGCTAACGCCTATGCCAGCAAGGAATGAGCCAGCA
AGGATTCATATAGATGTAGGGCCGCTTGCCGAACAAAGGCATTCATTAGGTGATGCTACTGCTGA
CACCACCCGACCTTCTGTCCCCATCGATACTGACCGTTACTGCCCGCCCCTCCTTATGCTACTGA
CCGATGACGATCGATCACCCCCGCATCTGTATGTACACCGGATTAGGATGGAACCTGCCACAGCG
AAGGAGTGATTGAGTGCTACCCGCCAGGACAGGAAATAAAGGGCCGAATAACGGGTCAAATAAGG
AAGGGGCAAATACCACCGCATACCACCACCGCATATCACCACCACTGATACCACAGTTGAAAGGG
AATAAATAACGCCCGGGTTCCTGCACCTTGCTTACCCATTTTTTA
Found at i:896837 original size:13 final size:13
Alignment explanation
Indices: 896819--896850 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
896809 AGGGGCAAAT
896819 ACCACCGCATACC
1 ACCACCGCATACC
*
896832 ACCACCGCATATC
1 ACCACCGCATACC
896845 ACCACC
1 ACCACC
896851 ACTGATACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.53, G:0.06, T:0.09
Consensus pattern (13 bp):
ACCACCGCATACC
Left flanking sequence: Indices 896319 -- 896818
TTTAAGTCAGGTCCTATAGTGAGTGATTCGTTTAGCCAGGTCCTATAGCGAGTGATTCAATAAGC
CGGATGCTATAATGACTGATTCAATAAGCCAGGTATTATAGTAAGTAAGGTTCGATAAGCCAGCA
GGGTGGAAACGATTTATCACTATTGATTGCCTTCTGACTTTGGATTCGACCTTACACTTCCTTCT
GCTAACGCCTATGCCAGCAAGGAATGAGCCAGCAAGGATTCATATAGATGTAGGGCCGCTTGCCG
AACAAAGGCATTCATTAGGTGATGCTACTGCTGACACCACCCGACCTTCTGTCCCCATCGATACT
GACCGTTACTGCCCGCCCCTCCTTATGCTACTGACCGATGACGATCGATCACCCCCGCATCTGTA
TGTACACCGGATTAGGATGGAACCTGCCACAGCGAAGGAGTGATTGAGTGCTACCCGCCAGGACA
GGAAATAAAGGGCCGAATAACGGGTCAAATAAGGAAGGGGCAAAT
Right flanking sequence: Indices 896851 -- 897350
ACTGATACCACAGTTGAAAGGGAATAAATAACGCCCGGGTTCCTGCACCTTGCTTACCCATTTTT
TATACCTCTCATTCAGGTCCTTCTGTTCCAGGAAATACCTAAAACTATTATGATCTGTCCTGACC
ACAAATCTGCCACCTACCAAGTACTGCCTGCCAACGCATGCATGATGGGGAGCATCTCTTTGTCG
TAGATACAGTAGAGTCTCTCTGGCTCCCCGAGCTTCCGACTCTCAAATGCTATCGGGTGTCTATT
CTGCATCAAGACTGCGCCTATTCCTGTACCCGAAGCATCACACTCGAGCACAAAAGGCTGAGTGA
AGTCTGGTAGGGCTAACACTGGGCAAGTGCTCATTACCTCCTTGAGTTTGTCGAATGCCTTCTGT
GATTCCCTTGTCAACCTAAAAGCCCCTTCCTTTGTGAGATCTGCACCCAGCTGTGAAAACCCCTT
TACGAATCACCTATAGTAACTGCATAGCCCAAAGAATCCCTGCAA
Found at i:901076 original size:10 final size:10
Alignment explanation
Indices: 901045--901092 Score: 60
Period size: 10 Copynumber: 4.5 Consensus size: 10
901035 ATCAGAATGC
901045 ACAGTACGAT
1 ACAGTACGAT
901055 ACAGTCTGACGAT
1 ACAG--T-ACGAT
901068 ACAGTACGAT
1 ACAGTACGAT
*
901078 ACGGTACGAT
1 ACAGTACGAT
901088 ACAGT
1 ACAGT
901093 CTGGGAATGC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 22 0.67
11 1 0.03
12 1 0.03
13 9 0.27
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (10 bp):
ACAGTACGAT
Left flanking sequence: Indices 900545 -- 901044
GGGTCCAGGAGGGCAGTGGAGTGGAGCTGGACACTGAAACTGAGATGGCTGGTTGGTACCTAAAA
GGAAGAAGGCACTCTGATCTGCATATCCGCATTGCGTAAGTGCTAGGAGAAGGCACTCTTATCCG
CATCTCTGATCCGCATATCCGCATTGCGGAAGTGATGGGGAAGTGCGGAAGTGAGAAAGACTGAT
TGCTCGGAGACTTTCCTAAGGTAAATGCCATTTGTTCTGGTCTACTTCTGGGCTAGTTTACTAAG
GTAATTTGCAAGTGAAGATCCTTGTAATCTGTAATAAAGTAATGCTTGTCCATGTGCCCCGCAAT
GTGCTTACCGGGGCTAACCGCTTCTATTTCTATCTTAAGATCTGTCTTTCCTGAAGGCTGGGCTT
ATATCTCTTGGCGAGTGGACCAGAAGGGCTTATATTTCTTCGCGAGTGGAATGTAGGCACACGGC
TGAGATGTAGGCTTTCAAGCAGAATGCACAGTCGTATCAGAATGC
Right flanking sequence: Indices 901093 -- 901592
CTGGGAATGCACGCTTAGAGATTCTATCTGGGAATGCACGCTTAGATTCGCTAGTCCGGGATAGA
GTTCCTAAAAGTCTGGGAATGCACCTCATGAACGAAAGGGCTATTGGGAATGCGCCTCATCCTCT
GCCTTATGACTTGCTTCCCTCTGTGCTCGGGGAAACACTCTTGCCTTATGACTTGCCTTAGTGCC
GGGGAAACACTCTCTTCCCTCTGTGCCGTGTTAAGACCTTTGGGATATATCCGGTCGCCGCTATA
TTTATATAAACCGCTAGGGATAGATTGATTATACCAGTCACCAGCGAATAACAGCGAAGACCAGC
AGTTATCGCTTCGAAGAGAATAGCTACTCGTTATCGCTACTCCTCAGAGAATCGCTACTCAGCGG
GTACCACAAAGGCAAGGAGATATTCGGTCAATGGAGAGAAATCGCTATACGGTCGGGCACTGTCG
GGGATAGATTGATTATTCCAGCCAAACACACTGCTCAAGCGTGCG
Found at i:901756 original size:13 final size:13
Alignment explanation
Indices: 901738--901763 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
901728 AGTTCCGGGT
901738 TAAGACCAAGGGA
1 TAAGACCAAGGGA
901751 TAAGACCAAGGGA
1 TAAGACCAAGGGA
901764 GATGTCGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.31, T:0.08
Consensus pattern (13 bp):
TAAGACCAAGGGA
Left flanking sequence: Indices 901238 -- 901737
TCCCTCTGTGCTCGGGGAAACACTCTTGCCTTATGACTTGCCTTAGTGCCGGGGAAACACTCTCT
TCCCTCTGTGCCGTGTTAAGACCTTTGGGATATATCCGGTCGCCGCTATATTTATATAAACCGCT
AGGGATAGATTGATTATACCAGTCACCAGCGAATAACAGCGAAGACCAGCAGTTATCGCTTCGAA
GAGAATAGCTACTCGTTATCGCTACTCCTCAGAGAATCGCTACTCAGCGGGTACCACAAAGGCAA
GGAGATATTCGGTCAATGGAGAGAAATCGCTATACGGTCGGGCACTGTCGGGGATAGATTGATTA
TTCCAGCCAAACACACTGCTCAAGCGTGCGTCCGGGGAGAGATTCATTCTTACTTATGACTTGCT
ACAAGGGAGGCGTCGCCGACTAGGTAAGGGGCCCCGCCTTATGACTTGCTACAATCTTATAGGGA
TATATTTATTATTCCAGCTAAGGAGTGCGTGCTTCAGTTCCGGGT
Right flanking sequence: Indices 901764 -- 902263
GATGTCGCTTGCTTATTCACTCTGCGGTAGCGAGCTACTAATGGATATTTTCTTTCTGGACATGA
GATCCCCTTCGGGCCATGAGGTCCCCTTCGGGCCATGAGATCTCGGCGTGCCGAACCCTTAATGA
TGCTATTTGTTCTGGCCAGTTATCGCCACTCCGTTCATATACGTTCATACCAGTTAAAGATACAT
ATCCGTTTATCGCAAGCAACTATAGGAATATATAAAAGCAACTATAGGGAGATATTTAGCCTTAG
CCCTACTTTTCCATTGTAACTAGTTGCCACAATCTTTCTCTTCCAAATTCACTTCCGAGAAACAC
CCAAGGGGATAAAATTGCTAACGAGACAAGATATCACAATTTCGAGTTTCATAAATGAATTAAAT
TGGGCGAGCGTCTCAGTTTTAATATGAACTCGGTTCACCTACCACATTAATGCTCTGGAGCATAT
TCGTTAGAGACCCAAATTTCATTTGAATGGTGAATGGGTTGGTGC
Found at i:901848 original size:19 final size:19
Alignment explanation
Indices: 901824--901870 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
901814 TCTTTCTGGA
901824 CATGAGATCCCCTTCGGGC
1 CATGAGATCCCCTTCGGGC
*
901843 CATGAGGTCCCCTTCGGGC
1 CATGAGATCCCCTTCGGGC
901862 CATGAGATC
1 CATGAGATC
901871 TCGGCGTGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.17, C:0.34, G:0.28, T:0.21
Consensus pattern (19 bp):
CATGAGATCCCCTTCGGGC
Left flanking sequence: Indices 901324 -- 901823
CCTTTGGGATATATCCGGTCGCCGCTATATTTATATAAACCGCTAGGGATAGATTGATTATACCA
GTCACCAGCGAATAACAGCGAAGACCAGCAGTTATCGCTTCGAAGAGAATAGCTACTCGTTATCG
CTACTCCTCAGAGAATCGCTACTCAGCGGGTACCACAAAGGCAAGGAGATATTCGGTCAATGGAG
AGAAATCGCTATACGGTCGGGCACTGTCGGGGATAGATTGATTATTCCAGCCAAACACACTGCTC
AAGCGTGCGTCCGGGGAGAGATTCATTCTTACTTATGACTTGCTACAAGGGAGGCGTCGCCGACT
AGGTAAGGGGCCCCGCCTTATGACTTGCTACAATCTTATAGGGATATATTTATTATTCCAGCTAA
GGAGTGCGTGCTTCAGTTCCGGGTTAAGACCAAGGGATAAGACCAAGGGAGATGTCGCTTGCTTA
TTCACTCTGCGGTAGCGAGCTACTAATGGATATTTTCTTTCTGGA
Right flanking sequence: Indices 901871 -- 902370
TCGGCGTGCCGAACCCTTAATGATGCTATTTGTTCTGGCCAGTTATCGCCACTCCGTTCATATAC
GTTCATACCAGTTAAAGATACATATCCGTTTATCGCAAGCAACTATAGGAATATATAAAAGCAAC
TATAGGGAGATATTTAGCCTTAGCCCTACTTTTCCATTGTAACTAGTTGCCACAATCTTTCTCTT
CCAAATTCACTTCCGAGAAACACCCAAGGGGATAAAATTGCTAACGAGACAAGATATCACAATTT
CGAGTTTCATAAATGAATTAAATTGGGCGAGCGTCTCAGTTTTAATATGAACTCGGTTCACCTAC
CACATTAATGCTCTGGAGCATATTCGTTAGAGACCCAAATTTCATTTGAATGGTGAATGGGTTGG
TGCGTTCTAAAGATCTGCACAAGCTGGCAAATAATCTTTTCGGAAGGCATGTCTAATCTCCCATG
AAATAGCCCTTTGGCTTATTATATGTGCTAGACGTACTCGCTCTT
Found at i:902013 original size:22 final size:22
Alignment explanation
Indices: 901972--902013 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
901962 CGTTTATCGC
*
901972 AAGCAACTATAGGAATATATAA
1 AAGCAACTATAGGAAGATATAA
*
901994 AAGCAACTATAGGGAGATAT
1 AAGCAACTATAGGAAGATAT
902014 TTAGCCTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.19, T:0.21
Consensus pattern (22 bp):
AAGCAACTATAGGAAGATATAA
Left flanking sequence: Indices 901472 -- 901971
CTACTCAGCGGGTACCACAAAGGCAAGGAGATATTCGGTCAATGGAGAGAAATCGCTATACGGTC
GGGCACTGTCGGGGATAGATTGATTATTCCAGCCAAACACACTGCTCAAGCGTGCGTCCGGGGAG
AGATTCATTCTTACTTATGACTTGCTACAAGGGAGGCGTCGCCGACTAGGTAAGGGGCCCCGCCT
TATGACTTGCTACAATCTTATAGGGATATATTTATTATTCCAGCTAAGGAGTGCGTGCTTCAGTT
CCGGGTTAAGACCAAGGGATAAGACCAAGGGAGATGTCGCTTGCTTATTCACTCTGCGGTAGCGA
GCTACTAATGGATATTTTCTTTCTGGACATGAGATCCCCTTCGGGCCATGAGGTCCCCTTCGGGC
CATGAGATCTCGGCGTGCCGAACCCTTAATGATGCTATTTGTTCTGGCCAGTTATCGCCACTCCG
TTCATATACGTTCATACCAGTTAAAGATACATATCCGTTTATCGC
Right flanking sequence: Indices 902014 -- 902513
TTAGCCTTAGCCCTACTTTTCCATTGTAACTAGTTGCCACAATCTTTCTCTTCCAAATTCACTTC
CGAGAAACACCCAAGGGGATAAAATTGCTAACGAGACAAGATATCACAATTTCGAGTTTCATAAA
TGAATTAAATTGGGCGAGCGTCTCAGTTTTAATATGAACTCGGTTCACCTACCACATTAATGCTC
TGGAGCATATTCGTTAGAGACCCAAATTTCATTTGAATGGTGAATGGGTTGGTGCGTTCTAAAGA
TCTGCACAAGCTGGCAAATAATCTTTTCGGAAGGCATGTCTAATCTCCCATGAAATAGCCCTTTG
GCTTATTATATGTGCTAGACGTACTCGCTCTTTGGAAAACAAAGGGTTAAACCCCCTTCCTTATT
CATGTTATTGAGGGGAAAATCACTCCACTAACTCGAGCGAGTAGCATCATCAGAACGCGAAAGGG
GAAAACCCTAAGTTCCTTCTGCCTTTTAATGAGTGAAGAGTGAGT
Found at i:906370 original size:20 final size:20
Alignment explanation
Indices: 906345--906387 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
906335 TTAGAAGGGT
906345 GGTTGATCAGGACCTTACTG
1 GGTTGATCAGGACCTTACTG
906365 GGTTGATCAGGACCTTACTG
1 GGTTGATCAGGACCTTACTG
906385 GGT
1 GGT
906388 GGGCAGGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.30
Consensus pattern (20 bp):
GGTTGATCAGGACCTTACTG
Left flanking sequence: Indices 905845 -- 906344
ATTAATACCTCATGTGCTCCATGCATGGATTCATACAAAATTATCTCTATAAGTTTTTAATCATT
CTTCATTCGTTGTTTGTGCTCTTCCGTCATCTACACCCATGTTTATGGTATGCTATGGAGAGAGG
TTGTTATGCTGCTGCTGGAAATGGTATGACTTAGATGTAGTGAGCTGATCTTGGGGGGGAATTGT
TGCCACTAACAAAAATTGTGCTGAGTCTTGATCCCCTGGAAGCCATGATCTTTACCTAAATTTGT
TGATAGGAAATGTGGTAATAGATTCTTGATGGGCTGCACTGCTTGAGCGTTGTTAAGATTCACAA
GAGATAAAGAAAATTGAATGGAACCAACACAAACCCTATTTATGCCATAAAGAGAAAATGAACCA
GCACTATGGCATGAAAATTTGGTTTTATAATGCGGACCTGTCTGGGTTTCCGAAAAATAGAAGGG
TTTATAAGGATCATATCTGTAGGGTTTACTTCGCGTTAGAAGGGT
Right flanking sequence: Indices 906388 -- 906887
GGGCAGGACCTACCTTACCTTAGCCTGAAAGGACCCTTCGCAGAGCTCTTTGAGGGGAAGAAATA
AAGGGTCAGTCATATCTTCCCGAACCTAATTTTCACCCGGTAAGTGATAACCTACACAAATTAAG
GTTATCCGAAGGGAAACTACGATCTATCTATAGTGCCGTAATTCTGTCACTATAGATCGATCTAC
GTTGCCGTAATTCACTATAGAATCATCTTTCCTCCACAAATTATCTGGTGATTCCCGAAACGCTC
CGCGTTCTCTTTCCCACCCAACCTGTTGCTTCTTTCTTCTAAAGGCTGTCCTCTCTCGGCTGGAT
GTTGGTCCAGCCTACTACGAGGATCCCGTACATCGTATTTATCCGGTCCCGTGGTTACTATGCCG
CCGCGTTTCTTTTCCGGTCCTTTTGCAGAATTTGTGCACTATATATTGTAGTTGCCTACACACAC
AAATTATGGGATATCCTTTAGTGTTTCGACTCTCCGTTCAGTGGA
Found at i:906396 original size:19 final size:20
Alignment explanation
Indices: 906345--906398 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
906335 TTAGAAGGGT
*
906345 GGTTGATCAGGACCTTACTG
1 GGTTGAGCAGGACCTTACTG
*
906365 GGTTGATCAGGACCTTACTG
1 GGTTGAGCAGGACCTTACTG
*
906385 GG-TGGGCAGGACCT
1 GGTTGAGCAGGACCT
906399 ACCTTACCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 10 0.31
20 22 0.69
ACGTcount: A:0.19, C:0.20, G:0.35, T:0.26
Consensus pattern (20 bp):
GGTTGAGCAGGACCTTACTG
Left flanking sequence: Indices 905845 -- 906344
ATTAATACCTCATGTGCTCCATGCATGGATTCATACAAAATTATCTCTATAAGTTTTTAATCATT
CTTCATTCGTTGTTTGTGCTCTTCCGTCATCTACACCCATGTTTATGGTATGCTATGGAGAGAGG
TTGTTATGCTGCTGCTGGAAATGGTATGACTTAGATGTAGTGAGCTGATCTTGGGGGGGAATTGT
TGCCACTAACAAAAATTGTGCTGAGTCTTGATCCCCTGGAAGCCATGATCTTTACCTAAATTTGT
TGATAGGAAATGTGGTAATAGATTCTTGATGGGCTGCACTGCTTGAGCGTTGTTAAGATTCACAA
GAGATAAAGAAAATTGAATGGAACCAACACAAACCCTATTTATGCCATAAAGAGAAAATGAACCA
GCACTATGGCATGAAAATTTGGTTTTATAATGCGGACCTGTCTGGGTTTCCGAAAAATAGAAGGG
TTTATAAGGATCATATCTGTAGGGTTTACTTCGCGTTAGAAGGGT
Right flanking sequence: Indices 906399 -- 906898
ACCTTACCTTAGCCTGAAAGGACCCTTCGCAGAGCTCTTTGAGGGGAAGAAATAAAGGGTCAGTC
ATATCTTCCCGAACCTAATTTTCACCCGGTAAGTGATAACCTACACAAATTAAGGTTATCCGAAG
GGAAACTACGATCTATCTATAGTGCCGTAATTCTGTCACTATAGATCGATCTACGTTGCCGTAAT
TCACTATAGAATCATCTTTCCTCCACAAATTATCTGGTGATTCCCGAAACGCTCCGCGTTCTCTT
TCCCACCCAACCTGTTGCTTCTTTCTTCTAAAGGCTGTCCTCTCTCGGCTGGATGTTGGTCCAGC
CTACTACGAGGATCCCGTACATCGTATTTATCCGGTCCCGTGGTTACTATGCCGCCGCGTTTCTT
TTCCGGTCCTTTTGCAGAATTTGTGCACTATATATTGTAGTTGCCTACACACACAAATTATGGGA
TATCCTTTAGTGTTTCGACTCTCCGTTCAGTGGATGAGATGGCTG
Found at i:910591 original size:31 final size:31
Alignment explanation
Indices: 910556--910616 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
910546 ACCTTCAGAC
*
910556 AGATAAGGAGAAGTAACCCACCTTAACCTTT
1 AGATAAGGAAAAGTAACCCACCTTAACCTTT
* *
910587 AGATAAGTAAAAGTACCCCACCTTAACCTT
1 AGATAAGGAAAAGTAACCCACCTTAACCTT
910617 AACGAAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.25, G:0.13, T:0.23
Consensus pattern (31 bp):
AGATAAGGAAAAGTAACCCACCTTAACCTTT
Left flanking sequence: Indices 910056 -- 910555
AATTCTTCCAGTCATTCTTTATATATGTAATAACACTCGATTCGATTCGATGTGAGTCGAAGGTA
CGGAGTCGCTCGATTGACATGGGAGATCGAGGGGTGAGGGTACGAACCGCTCGCCCGACAGCAGG
AGGGAAAGGAATGTGAAGTGAATCACCCTAACTTGACGTTCGTGAAACACTTCGTTTCAAGTCAT
AAGGCAAGCGTAATTACATCTATAATGAGATATATCTTTGTATACGATATTATTCGATCATGTTT
TCGTTATGATTCGGGTTCAGAAGACTCGCAAAGCAAAGGAAGTAAGTGCCTTACCTGTTAGGGGC
AGTAGTAAACAGACAGTAATAAAGGCAGTGCGGTAAGTAAGATCGGGTAGTTAACAGTAGGCGTG
GCGGGTTGGCGAATAGAATATGAATATCTGGATGGAATAATCGCCTTACGATACACCAAATACGA
AATAATTACAAGAAAGATAAGGAGAAGAGTTTCCCACCTTCAGAC
Right flanking sequence: Indices 910617 -- 911116
AACGAAATAATCACCAAATAACTCACCTACCTTGCAAGGGTTTTTACTTTTCATTCATTTAGGTA
GGGGCTTGCCATCAAAGAAATATAGGCATCTTAATTGGACTTTTCATAGGCGTTAGAAGATGCGA
AACCTTGAAACTCAGGTATAACCGGATACTTTGCCATGCCGTATGTCATCCTATTTTCAGGTGCC
CTCAATGCTATGCCTGCTATCTTTCTTTTTTTCCTTGACTGGTCCGAAGCTCGCAGGACCTTGAG
CCAATAAACGGATAGATGGTCGATTATTTGTAGTTACCCTTGCTCCCCCGATTGCTGGATGGCAC
GGATTAGAATTACCCCATACTGCTGCAGTTGGACAGGTTGGATCGTCATGCCTTAGTAATTAATC
CCAGAACCTTGAGCAGAGATTGTTTCACTGCTGGATAGATTCTCAACTGCCAGAATTTCCGAGAC
ATGACTTCAGAAACATAGCTGGATGGTCTCGAATAGCCGAGGACT
Found at i:920810 original size:18 final size:19
Alignment explanation
Indices: 920787--920828 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
920777 ATCCTCATTC
*
920787 CCAGCAAGCA-GAGTAGCA
1 CCAGCAAGCACGAGTAGAA
*
920805 CCAGC-AGCACTAGTAGAA
1 CCAGCAAGCACGAGTAGAA
920823 CCAGCA
1 CCAGCA
920829 TTATGATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.38, C:0.31, G:0.24, T:0.07
Consensus pattern (19 bp):
CCAGCAAGCACGAGTAGAA
Left flanking sequence: Indices 920287 -- 920786
AATAAGAGACAACAGCTTTTCAACAGCTTTTAATTAGTGTCAATTAGTGTCAATAAGAGACAATA
GAGAGGCAAGCTAGAACAGAGGCAACTAACTGCAATTCAAGCTAGAACAACCAACTGCAATTTCT
ATTTTCATTAGTGTCAGTAAGCCAGAGAGCCTGCCAGCCAGTCTTTCAACTCTGCAATTCAATCT
AGAACAGATAGGCAAGCTAGAAACAGTAAGCTAGTCAGTCTTGCCAGTAAGTCTTGCCAGAGAGG
CAACCAACTACAATTTATTAGTGTAAATTAGTGCCAATAAGCCTTTCAACTAACTGCAATTTATA
AGTGTAAATAAGAAGAACAGAGAGGCAAGCTAGAACAGAGAGCCTGCCAGTTAGCCTGCCAATAA
GAGACAACAGAGAGGCAAGCTAGAACAGACTGCCAATAAGCTATTCAATTTCATTACATTTGTAA
AGCCTTTTAGCAGCAGTTTCAGCACTACTTTAACCATCCTCATTC
Right flanking sequence: Indices 920829 -- 921328
TTATGATTATCAGTTGTTCCAGGATCATTTCCATCAGCAGTTGAGCACGGTCATTTATAAGAAAC
GGAATAATTCCCAGCAGAACAAGGATTCCCAGCCCAAGCAGCAAAAGGAATCCCAGGATCATTTG
AACCAGCATTCAAAGCAGCATTAGAACCAGCAGCCCTAGCTGCAATTGGACCGGCATCATGACAA
GGAGCAGTTGAACCAGCAGAATCAGAAGTAGTTCCAACACCAACTAGTTGAATAGGACCAAGAGT
AGCAGTCCCAGGATCATTCTTCCAAGCAGCATAACCAGTAGAAGCATCACCAATTGAACCGACAG
CAGCCCAAGCAGAACGACCAGCACTATGACCAGCATTTAAAGCAGCAGCCGAACCAGGAGCACTA
GGATTCCCAGCAAAAAAAGCATAATGATCAGGAAGGACCACTAAAACCAGTGAACCAATAAAGGG
CAGGCCAAGCATTATTGAAATCAGCATTATCAGGAGCAGCATTAC
Found at i:921347 original size:12 final size:12
Alignment explanation
Indices: 921332--921361 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
921322 GCATTACCAT
921332 CAGCATTCTTCC
1 CAGCATTCTTCC
921344 CAGCATTCTTCC
1 CAGCATTCTTCC
921356 CAGCAT
1 CAGCAT
921362 CAGTGGAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.20, C:0.40, G:0.10, T:0.30
Consensus pattern (12 bp):
CAGCATTCTTCC
Left flanking sequence: Indices 920832 -- 921331
TGATTATCAGTTGTTCCAGGATCATTTCCATCAGCAGTTGAGCACGGTCATTTATAAGAAACGGA
ATAATTCCCAGCAGAACAAGGATTCCCAGCCCAAGCAGCAAAAGGAATCCCAGGATCATTTGAAC
CAGCATTCAAAGCAGCATTAGAACCAGCAGCCCTAGCTGCAATTGGACCGGCATCATGACAAGGA
GCAGTTGAACCAGCAGAATCAGAAGTAGTTCCAACACCAACTAGTTGAATAGGACCAAGAGTAGC
AGTCCCAGGATCATTCTTCCAAGCAGCATAACCAGTAGAAGCATCACCAATTGAACCGACAGCAG
CCCAAGCAGAACGACCAGCACTATGACCAGCATTTAAAGCAGCAGCCGAACCAGGAGCACTAGGA
TTCCCAGCAAAAAAAGCATAATGATCAGGAAGGACCACTAAAACCAGTGAACCAATAAAGGGCAG
GCCAAGCATTATTGAAATCAGCATTATCAGGAGCAGCATTACCAT
Right flanking sequence: Indices 921362 -- 921861
CAGTGGAACCGGCAAAGGCAGCACAAGCTGAACAACCAGCACAAGTATGATTCTCAGTACGAGCA
GCACAAGGAGTCCCAGCATATTAACCAGTTACCGTAGCAGTTTAAGCCTCAAAACCAGGAGCACT
ACAATAAGCAGCAGCACCAGTAGACCCGGCACAAGCAGAACAATGACCAGTATAATTTCCATCAT
AAGTTCCCAGAGCATTTCCAAGAGCAGTTGAACCAGCATCAGCAGTTAAAGGAGCAGCATCCTTA
TTTCCAGGATAATAAGAACCAGCAAAAGCAGCGGGCTAATAAGCATAAAAGAGAACCAGGAAAAG
CCGCAATCCCCTAAGCAGTTGACCCAGCCCAGTGGCATTCTCAGGATCAGTTCCAGCATAATCAG
TTGAATCGAATTGATTCTTTTCCATCAGTTCCACACGACCAGCATTTCCAGCATCAGTCGGGGCA
TTCGATTTCCATAAGCATTGGAACCGGCGATCATCATTTGGATTC
Found at i:922644 original size:13 final size:13
Alignment explanation
Indices: 922626--922650 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
922616 CTTCGCTGAG
922626 AGTCCCTAGTCAT
1 AGTCCCTAGTCAT
922639 AGTCCCTAGTCA
1 AGTCCCTAGTCA
922651 CAAGGTGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (13 bp):
AGTCCCTAGTCAT
Left flanking sequence: Indices 922126 -- 922625
TAAAAAGGTATCCCCGAGTTCCTGTCGTCAGCATGTAGCTAGGTACAGAGAATCTCTTTCTGGCG
GGTGTATAGTCTGAAGAAGGTAAGGGGCTAATGAAGCGATTCCTCTTTCCATATCCATTCAACGA
TCCAACTATATCTGGTGAATGGCTGGCAGTAGATAGAGAGGCACCCACCCTTACACTTGGTAATA
GAGTCCCACCCAACCTTGAGCGCTTGGCTATCAGTATATAGAGGAAGGTAAGGCACCTCACACCC
GTGCTTTAACCTATACTCAGTCAGCATGAAGGTCAGGGAAGCTCTAGAAGGAAAGAAGCTCTGGT
CGGTCCAGGAGTGCTTGTCAGTGCTGCTTGTTACAGTATCATTGCTTTAACCTATACTCAGTCAG
CATGAAGCTCTAGTCGGTGGTGCATGAATGAAGAAGCTCTAGGAAGTGCTGCTTATAGTTGTTAG
TCGTTGAATATAAGTGCTTGTTGATACCCAGTTGTCTTCGCTGAG
Right flanking sequence: Indices 922651 -- 923150
CAAGGTGAGGAAGGGCAGTGAAATACGCATTAAGCCCGCATTCCTATCTCCGCGATTGGGTTAAT
GCATCGATCCGTGTTAGTACGTGCGTTATATACGTTGCGGTAGTTTCAAAAAACAGATATACATT
TGATGGATGAAATAGTTCAAGAGGAAGGATGGCTCGACAGAGGAGGGTGAGGAACCCATTCTCAG
TCAATCAGTCTTAGTCCCAGGTACTCGTTCAAAGGGAATAAAGCCAGGCAATATAGGCGATATAG
ATAGGCATCAAGCACACGTGAGCCCAAAGCGGAGGCTCGGTCAACCTGTCCCATCCTTCTGGGGT
CTTAAGTGACCATAGAACGCAAGCAAATGCCCTTTGGTTCAAACCAAAGACTAAAGTTGAAGTCC
CTAGTTTACAGGCTCTTGGGTTAAGGCCAATGGAGAAAGGCTGCAGGGTTCTTAAGTTTCAAGGC
TTACTTCTTCTGTGGGACTTGGTGAGGCTGTGAAGGCTAAAGGCT
Found at i:924491 original size:20 final size:20
Alignment explanation
Indices: 924466--924532 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 20
924456 GAGGAAAGAT
924466 GAAAGATAAGATCGAGTAAG
1 GAAAGATAAGATCGAGTAAG
*
924486 GAAAGATGAAAGATAAGATCGCGTAAG
1 G-AA-A-G----ATAAGATCGAGTAAG
924513 GAAAGATAAGATCGAGTAAG
1 GAAAGATAAGATCGAGTAAG
924533 TCGGGAGGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
20 15 0.39
21 2 0.05
22 1 0.03
23 1 0.03
24 1 0.03
25 1 0.03
26 2 0.05
27 15 0.39
ACGTcount: A:0.49, C:0.06, G:0.30, T:0.15
Consensus pattern (20 bp):
GAAAGATAAGATCGAGTAAG
Left flanking sequence: Indices 923966 -- 924465
AAACACAGGAGAAGCAAAGGTAACTAGAGAAGCAAGGATAGCTATATCAGCATTATATACAGATA
CAAGTCCAGATCGAGACCCATCATCAAAAGCAAAGGCAAGGGCAACGGGGAAGGGAGGGAATGTA
CTTAAGCCCTTACCTTCGCTATCTATGCTCAGGTAAGGGATAACCAACCCTGAGCAGAGCTCAGG
TAAGACCTGATTTCATATCTTCCCGAACTCTAACTCAGGGTTGACCTTTCAGGACCTTTCTGTCG
GGCGGGAATTTAATCCATACAGTTCTGCATGTGGCGCTTTCTGCCTGCCCTATTTGTACAAGAAC
CCCTCCCGCAGCCCCCTAGAGAGAGTCTCGTTGCAGCTTTTCGTCCGGCAAACCTCTGCTCTCCG
CATAGTAAGCGCCCCCTTCCCTTACTATAGAAGGGAGGTTTTTTCCCGCCCGGGAAAGGTATAAT
TTATGAGGCGTAACGTATTGATACAGGAGTAAGTCGAGGAAAGAT
Right flanking sequence: Indices 924533 -- 925032
TCGGGAGGGACGTTGGCTGCTGTGTACCGACCACCACGATTAGGAACGAACCAGCAGTGTTCCAA
CCAAATGGGAATATTGTTCAATCCATAGACAGACACCCATCTCCAACTGGGACCACTCGACCGAT
CTCATCGACTTGTAGATTGGTGCATGCAATGGTAATTCTCATTGGAAGAAGTTGATCGATGAGTC
GTTCTCCCCTCCTTCATCCATCGCATTTTTCCCCGTTCAGGAGGAACTGTTTTCGTGATCGAATT
ACGAGATGGATATACGAACTGTATAGAATCATTCGCTGGAATGGGATAAGTTATTCCTCTATATA
ATCCCAATGGGATATTCGAATCCACCAGAGATACGATAGGTATTTGTAATCGATCAGCTTCGAGT
ATGACCGAGGACTCCCTATCTGCATTCATTATTGCTACACGATCTGGTTGTTGGCCGGATCCTCC
GAAAAAATTGATCTTCCTATTCCTCGAACGTGAAAGACGGATCTT
Found at i:924495 original size:27 final size:27
Alignment explanation
Indices: 924457--924519 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
924447 GAGTAAGTCG
924457 AGGAAAGATGAAAGATAAGATCGAGTA
1 AGGAAAGATGAAAGATAAGATCGAGTA
*
924484 AGGAAAGATGAAAGATAAGATCGCGTA
1 AGGAAAGATGAAAGATAAGATCGAGTA
924511 AGGAAAGAT
1 AGGAAAGAT
924520 AAGATCGAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.51, C:0.05, G:0.30, T:0.14
Consensus pattern (27 bp):
AGGAAAGATGAAAGATAAGATCGAGTA
Left flanking sequence: Indices 923957 -- 924456
AGTGACAGAAAACACAGGAGAAGCAAAGGTAACTAGAGAAGCAAGGATAGCTATATCAGCATTAT
ATACAGATACAAGTCCAGATCGAGACCCATCATCAAAAGCAAAGGCAAGGGCAACGGGGAAGGGA
GGGAATGTACTTAAGCCCTTACCTTCGCTATCTATGCTCAGGTAAGGGATAACCAACCCTGAGCA
GAGCTCAGGTAAGACCTGATTTCATATCTTCCCGAACTCTAACTCAGGGTTGACCTTTCAGGACC
TTTCTGTCGGGCGGGAATTTAATCCATACAGTTCTGCATGTGGCGCTTTCTGCCTGCCCTATTTG
TACAAGAACCCCTCCCGCAGCCCCCTAGAGAGAGTCTCGTTGCAGCTTTTCGTCCGGCAAACCTC
TGCTCTCCGCATAGTAAGCGCCCCCTTCCCTTACTATAGAAGGGAGGTTTTTTCCCGCCCGGGAA
AGGTATAATTTATGAGGCGTAACGTATTGATACAGGAGTAAGTCG
Right flanking sequence: Indices 924520 -- 925019
AAGATCGAGTAAGTCGGGAGGGACGTTGGCTGCTGTGTACCGACCACCACGATTAGGAACGAACC
AGCAGTGTTCCAACCAAATGGGAATATTGTTCAATCCATAGACAGACACCCATCTCCAACTGGGA
CCACTCGACCGATCTCATCGACTTGTAGATTGGTGCATGCAATGGTAATTCTCATTGGAAGAAGT
TGATCGATGAGTCGTTCTCCCCTCCTTCATCCATCGCATTTTTCCCCGTTCAGGAGGAACTGTTT
TCGTGATCGAATTACGAGATGGATATACGAACTGTATAGAATCATTCGCTGGAATGGGATAAGTT
ATTCCTCTATATAATCCCAATGGGATATTCGAATCCACCAGAGATACGATAGGTATTTGTAATCG
ATCAGCTTCGAGTATGACCGAGGACTCCCTATCTGCATTCATTATTGCTACACGATCTGGTTGTT
GGCCGGATCCTCCGAAAAAATTGATCTTCCTATTCCTCGAACGTG
Found at i:925463 original size:2 final size:2
Alignment explanation
Indices: 925420--925454 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
925410 GTTAGCTACG
925420 TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
925455 CGTATATATC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 924920 -- 925419
AGTATGACCGAGGACTCCCTATCTGCATTCATTATTGCTACACGATCTGGTTGTTGGCCGGATCC
TCCGAAAAAATTGATCTTCCTATTCCTCGAACGTGAAAGACGGATCTTTCTCGGAATCGGAAATA
GATGCATACTCGAAGAATTGGTCAAAAAACCCCCGATCCTCCATTGATAATCATTTATACAGCTC
CGATCGATTTTCGTCGCCATTTGTTCCATTATATCATCGGATAACGAATTGGTATTTACGGATAA
TAAAAGGCCTTTTTCACGAATGGGAGATCCTATGGAATGACAAGCGTTTCGTGAACAAATCAGTG
TCTTGTCTGGATCGGGAATAGCAATTTCATTTCTGGAACCGTATATATATACTTCGGAATGGTGA
GCAGCTACCCGACGGCCCAGATGTGCGTTCGTACTCGGTAATTTTTGAAGAACCAAACTGGGGGG
ATTGTACATGGTCCTCTTTCGAGCTGGCTCAGGTGGTTAGCTACG
Right flanking sequence: Indices 925455 -- 925954
CGTATATATCCATTAGTCTAAATCTATGGATAGAGAGTAATATATTAGAATCAATGTATAAATGG
ATATGCATAAATGGAATTAATGATGCTTTATCACTCGATCGACTAGATATGGAAGGCTGGCTGTT
TATCGCTCGCTCACGCTTGGTACTTATCGATCTCCGCCTACCTAAATGAAATTTGTGCCAGAATT
ACGGCAAATTCTGTAATCTAGTATAGCACAGAATTTGTGAATTACGGCTCACCTCACTATAGCGA
GCAAGCAGTAGCAGTAGTTGCATTCTGGCCTTATTGATTTAAGTTGCATGCACGGTATAACCTTA
TTGATCATCTCTTCATTTAGGCTCCTGCTAGCCTACCCCGCTTTCCTTTGTGGCCCCGAGTGAGG
CTGGCTGGCTTCTGCCGTGTCGCCCGGTGTTTTTCCCGCCGTGCGACGACTATTCTATTATATTT
AGCTAGATATAGATCTATAGCTCCCTCTATAGCTTCCACCCACCT
Found at i:929189 original size:25 final size:24
Alignment explanation
Indices: 929161--929212 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
929151 TTTTAGGTTC
*
929161 AAGGGTAAGTCTTCTAGTCCCCTTA
1 AAGGGTAAGGCTTCTAGT-CCCTTA
*
929186 AAGGGTAAGGCTTCTAGTTCCTTA
1 AAGGGTAAGGCTTCTAGTCCCTTA
929210 AAG
1 AAG
929213 TCTTCTAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (24 bp):
AAGGGTAAGGCTTCTAGTCCCTTA
Left flanking sequence: Indices 928661 -- 929160
AGGTCAACCCTCTCTCTCCTTATCCTCGGCTAATAAACCACCCTCCATCCATCTCTGTGTCATCA
TAAGTTCTGGCTGTTTCTAATCAAACTAACTATCCAGGGCTGTTAAACAATTTCTTTCTGTTCTG
CTGAAGGTTCTGACAAAGTCCAAGCTGTACCAAGTGAGCATATTCGAGCAAGTGTGATCCAAACT
GTACATATCCTAGCAACACTAGCCCATCCGTTCAACAAAAGGTTGCTTTCTAATTTACCCTCATC
CATCCAAGCCATCTGGCAGTGAAACGAGATAAGCTTAAGGGATTTATCTAAGTCAACCATTCCAT
TCCATTCTTCCACGCATCCAACCCATCCACCCAAGGAAGCCCATCCAATCTAAGGGGTCTAGCTG
TATAGACTCAATTCGAAAGGGCAGTTCCCACGGACGCATAACTTAGCTGTTCAACTGATTCAACT
GAAAGGTCTTCCTCTCAGACTGAAGCTTCTCTTTCTTTTAGGTTC
Right flanking sequence: Indices 929213 -- 929712
TCTTCTAGTTCCTTAAAGGCTTAGGGTCAGAAACACGCTCATCTGTTCAAGGCAAGTCAGATTCT
AGTGATTATGCTCCTTAAACTGCTTATGGAGATGCTGCTGGGAATGAAGCTGATTGGTGATGCTG
GGCCTATGGTTTCACTGCACGCTGGATAGCTGCTGGGAACGCTGCTTGTTCAATTGATTATGCTG
GGAAGCTGTTCCAATCCCAATCTAATCTATCTCTTGTGGGGCTGCTCTCTAGGGTGACCAACCAT
CTGTACTGGGTGCTTGTAACTCTCACTCAACAAGTAAGCTAGTGGTTCCGCTTAAGGAAGGGGTA
CGAGGTAAAAGCCTACCTAAAGGTCTCAGCTCTCTAGCTGTCCCAATCCCAATCTATTCTCTTAT
CGGTGGCTGCTTTCTAGCTGGACCATTCTCCTAAAATGAATAAGTATGGTTCTTCCTATCCTATC
CAGTTAATTCAATTTATAAAGGTATCCTCTCATCTTGTGGCTTGC
Found at i:929219 original size:18 final size:18
Alignment explanation
Indices: 929196--929230 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
929186 AAGGGTAAGG
929196 CTTCTAGTTCCTTAAAGT
1 CTTCTAGTTCCTTAAAGT
929214 CTTCTAGTTCCTTAAAG
1 CTTCTAGTTCCTTAAAG
929231 GCTTAGGGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (18 bp):
CTTCTAGTTCCTTAAAGT
Left flanking sequence: Indices 928696 -- 929195
AACCACCCTCCATCCATCTCTGTGTCATCATAAGTTCTGGCTGTTTCTAATCAAACTAACTATCC
AGGGCTGTTAAACAATTTCTTTCTGTTCTGCTGAAGGTTCTGACAAAGTCCAAGCTGTACCAAGT
GAGCATATTCGAGCAAGTGTGATCCAAACTGTACATATCCTAGCAACACTAGCCCATCCGTTCAA
CAAAAGGTTGCTTTCTAATTTACCCTCATCCATCCAAGCCATCTGGCAGTGAAACGAGATAAGCT
TAAGGGATTTATCTAAGTCAACCATTCCATTCCATTCTTCCACGCATCCAACCCATCCACCCAAG
GAAGCCCATCCAATCTAAGGGGTCTAGCTGTATAGACTCAATTCGAAAGGGCAGTTCCCACGGAC
GCATAACTTAGCTGTTCAACTGATTCAACTGAAAGGTCTTCCTCTCAGACTGAAGCTTCTCTTTC
TTTTAGGTTCAAGGGTAAGTCTTCTAGTCCCCTTAAAGGGTAAGG
Right flanking sequence: Indices 929231 -- 929730
GCTTAGGGTCAGAAACACGCTCATCTGTTCAAGGCAAGTCAGATTCTAGTGATTATGCTCCTTAA
ACTGCTTATGGAGATGCTGCTGGGAATGAAGCTGATTGGTGATGCTGGGCCTATGGTTTCACTGC
ACGCTGGATAGCTGCTGGGAACGCTGCTTGTTCAATTGATTATGCTGGGAAGCTGTTCCAATCCC
AATCTAATCTATCTCTTGTGGGGCTGCTCTCTAGGGTGACCAACCATCTGTACTGGGTGCTTGTA
ACTCTCACTCAACAAGTAAGCTAGTGGTTCCGCTTAAGGAAGGGGTACGAGGTAAAAGCCTACCT
AAAGGTCTCAGCTCTCTAGCTGTCCCAATCCCAATCTATTCTCTTATCGGTGGCTGCTTTCTAGC
TGGACCATTCTCCTAAAATGAATAAGTATGGTTCTTCCTATCCTATCCAGTTAATTCAATTTATA
AAGGTATCCTCTCATCTTGTGGCTTGCTGCTTGTAACTCTAGACA
Found at i:932112 original size:22 final size:23
Alignment explanation
Indices: 932061--932119 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
932051 TTATGGCACT
* *
932061 TATCTGATCTATACCGCAACCAC
1 TATCCGATCTATTCCGCAACCAC
*
932084 TAT-CGATCTATTCCGC-TCCAC
1 TATCCGATCTATTCCGCAACCAC
*
932105 TATCCGATATATTCC
1 TATCCGATCTATTCC
932120 TGCACTTATC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 7 0.23
22 21 0.68
23 3 0.10
ACGTcount: A:0.25, C:0.34, G:0.08, T:0.32
Consensus pattern (23 bp):
TATCCGATCTATTCCGCAACCAC
Left flanking sequence: Indices 931561 -- 932060
GGTGGAAGTAAAGCCTTGCTTGGCTTAGTAAAGTACGGTAGAATAGAACTTGCCTTACTTACTTA
TCAATTTACTTATCTGGTAGTGGGGGGCCCTGGCTAGTGACCGAAATGAGATATTAGTTTACGGT
AAAGCAACACTTCGCTAAATAGGGGCTATTAATTTACTTCCCTGGGCTGTGGGGCTATGAAAAGA
CTTCCCTGGGCCATTGGCCTTATCTCCTTGGCTTGGCACTCGGAAAACATGACTTGAATCTCGGT
CATCAGCACTCGGCAGAAGGAGGACTTTTCATCCCTGCCTTTCGTCCAACTAGTCTATCCAGCTG
TGCGGTGGTAAATTCTCCTCTGTGAACCTGGAAGCGAGGTTACGAGCTTGCTCTATGAAAAGGCG
TTGCAGTTCAGCGCAACTCTCAGGGTGGGGGGATTGGAAAAATAGAGATACGCCCGCCGATCTGG
GGTGGATCTGTTAGTCCTCGAAAAGCGACTTACTTTTATGGCACT
Right flanking sequence: Indices 932120 -- 932619
TGCACTTATCTGATCTGATCTCACCCCGCCCTGACTGATCGAATATCTATACCGCTCATCTTATC
TGATATCTATACCGGAACTTAAGGCTGGTCTAACTTAACTGATCTAACTGGTACCCTAATGAGTC
CTTAACTGATCGAACTTCACCGAAAGAGTTATTAACCGATCTAACTAACTGGTCAAGCTGAGCGC
CTGCCTCTGCCTAATATTCCTACTAAACGAGCGATATACGAAAGATTTGTTTAACAACTCCAAAA
AGACCTAAGCCTGTAGGTTCATACGCCAGTCTTACATAGCTGGTCATAGCCGAGAGCCAGTGAGT
GCTGATAGCCAGGAGGTGGTGTGTCATTGCCAGAGACCAATAGATAGAACCAGTAAGTGCCCATC
ATTGATGGCCAGAGGGTCACTTAGCCGAGAGCCCATCACTGCCGGTCATTGAAGAGTCTGTAAGG
GAGAGGAAGTCAGAGGAGGATCAGACTGAAGCTGCCGCTGCTTGC
Found at i:934029 original size:24 final size:24
Alignment explanation
Indices: 933997--934045 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
933987 CTCTGGGCTG
933997 CTTGATATAGATTCTACAGCATAA
1 CTTGATATAGATTCTACAGCATAA
934021 CTTGATATAGATTCTACAGCATAA
1 CTTGATATAGATTCTACAGCATAA
934045 C
1 C
934046 ACGAAGGAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (24 bp):
CTTGATATAGATTCTACAGCATAA
Left flanking sequence: Indices 933497 -- 933996
TGAACTTTTAGGGCTTGATCCTTGCCTAGATATTGGGATTGGGAAGGGCTGGCTTGTAGGGGTGG
TAGGTCTGGCTGGGAGATAAGGTCTATTCCTCTGGGAAAGGTATTATTCCGCCCATTGAGTTAAT
CTTTCATCATTTTTTTTACTAATGAATGGCCTTTAACCTTCGAAGTGGGTCTTATCATAGTGCCT
CTTTCCTCGGGTTAAGCTATTCTGTAGAGCCCGCCCAGCCCAGATAAGTACGCAAGAGTTAAGTA
TGGCAGAGGGAGGGAAGTAGCGGGAAGGGATAAGTAAGCGTCCGTACCAATGCCTCTCGATTGAG
ATTTGTTTATTGGACTAGTTACTGGACACTAAGGAGGAATCAGTACACTAATTTACACTATGGAG
AAAACTAATTGACACTAAAGCTGATAAGGCTGGTCACTCTATACAGCGTAAGGAAGGTTCAGCTG
TACATCCATGCCCGTATAATTCTATCTCTGGGCTGCTCTGGGCTG
Right flanking sequence: Indices 934046 -- 934545
ACGAAGGAGGAATCAGTACATAACTAAACTCTTGCTTATTCTTTTTCTTTGCCTGTCGATAGGCA
CGGGAAGGAATGTTACATTTTCGGGTCATAGGTTTTCGGGTCATAGGCACCATTGCGGTAAGGGA
TGGCACATTTGCGGGGCACGATTGCGGTCAGGAATGTCCCGTTTTCGGGTCATCATCGATCTACC
ACATCGATCAGAAAAACCACATATTGACTCTCTCTCCAATCGAAGGAAGTCAGTGAGCCATTCAA
GAGTCATTATATACGTAATTATACCTTAAGATAGCCTATCATTGTAAGTCGGTAATAGCCGGCCT
GGCCTGGACTCATGGGATGGGCTTGGCTGGGAAGTCGGTACTTGGCTTGGTTAGCCCAATTTTAT
CAGCGCTTAGCTCCCGGGATCGATGCTTTGGAACCTTGACTGCTGGCTCCTTCAATGACTGTATA
TGACTAGCTGCTGCTATGGCACTACTCAACCTGGGGCTGGCAATG
Found at i:934148 original size:15 final size:15
Alignment explanation
Indices: 934128--934157 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
934118 GAATGTTACA
934128 TTTTCGGGTCATAGG
1 TTTTCGGGTCATAGG
934143 TTTTCGGGTCATAGG
1 TTTTCGGGTCATAGG
934158 CACCATTGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.33, T:0.40
Consensus pattern (15 bp):
TTTTCGGGTCATAGG
Left flanking sequence: Indices 933628 -- 934127
TTTCATCATTTTTTTTACTAATGAATGGCCTTTAACCTTCGAAGTGGGTCTTATCATAGTGCCTC
TTTCCTCGGGTTAAGCTATTCTGTAGAGCCCGCCCAGCCCAGATAAGTACGCAAGAGTTAAGTAT
GGCAGAGGGAGGGAAGTAGCGGGAAGGGATAAGTAAGCGTCCGTACCAATGCCTCTCGATTGAGA
TTTGTTTATTGGACTAGTTACTGGACACTAAGGAGGAATCAGTACACTAATTTACACTATGGAGA
AAACTAATTGACACTAAAGCTGATAAGGCTGGTCACTCTATACAGCGTAAGGAAGGTTCAGCTGT
ACATCCATGCCCGTATAATTCTATCTCTGGGCTGCTCTGGGCTGCTTGATATAGATTCTACAGCA
TAACTTGATATAGATTCTACAGCATAACACGAAGGAGGAATCAGTACATAACTAAACTCTTGCTT
ATTCTTTTTCTTTGCCTGTCGATAGGCACGGGAAGGAATGTTACA
Right flanking sequence: Indices 934158 -- 934657
CACCATTGCGGTAAGGGATGGCACATTTGCGGGGCACGATTGCGGTCAGGAATGTCCCGTTTTCG
GGTCATCATCGATCTACCACATCGATCAGAAAAACCACATATTGACTCTCTCTCCAATCGAAGGA
AGTCAGTGAGCCATTCAAGAGTCATTATATACGTAATTATACCTTAAGATAGCCTATCATTGTAA
GTCGGTAATAGCCGGCCTGGCCTGGACTCATGGGATGGGCTTGGCTGGGAAGTCGGTACTTGGCT
TGGTTAGCCCAATTTTATCAGCGCTTAGCTCCCGGGATCGATGCTTTGGAACCTTGACTGCTGGC
TCCTTCAATGACTGTATATGACTAGCTGCTGCTATGGCACTACTCAACCTGGGGCTGGCAATGCA
CCTTATGGGCTAGTCCTCCTGGCCTGCTGTCTCTGCTCGGTTAGGCCTCCTGTCTCTGACTGGTG
GCTGTGGACAGTGGTAGTCCGTGGGAGCACCCTCTCATGTGGGCT
Found at i:962360 original size:13 final size:13
Alignment explanation
Indices: 962342--962368 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
962332 TAAAGACCAA
962342 AGGGAGAGGAAGG
1 AGGGAGAGGAAGG
962355 AGGGAGAGGAAGG
1 AGGGAGAGGAAGG
962368 A
1 A
962369 TTGATCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (13 bp):
AGGGAGAGGAAGG
Left flanking sequence: Indices 961842 -- 962341
ATGTAATGTAATGCGGGAACTCATGCCCAACCAAGTATGTACCTATCCATTGGGCCCGAGTTCCA
AACCCCGGCGAGTCCATTACCCACCCCCTCACTTACACGCACGAACGATCGGGGGTTGCTCGATC
GAATATTACTATTCGATAGGCTTGCTTCAATAGACCTGAGACAGACGGAATCTTGGTCCTGGCCT
CACTGCCCCATATGATACGCATGCATACCCTTTCGGATAGCAACAAATAGCCCTGATCTAGAACC
TGGATGAACGAATAAGGAGAGGGATCTCTCTTACCCAAGTACGAAGAATCGATTCATCAATCGTC
ATCGCCGGAGATAGAAGTGTTTGGCTATTACAGGTACAACCTGCCAATAGTAAACGTAAGACACA
CTCGTACGGATAGAGGAAGGACTGATACGAATATTCAATCACTAGAAGGATTTATCACTCGATTG
ACCATAGGGAGATCGAGGTGCGGAGCCGCTCTCAATAAAGACCAA
Right flanking sequence: Indices 962369 -- 962868
TTGATCTTTTGCTGGAAGGAAGAAAGAAAGATTCTACCGAACTGCTGCTGGAAGGAAATTGATTT
GCTTGCCCGCAGAGGGTAAGGATGAGCGAGGTACGAGCGAATCGCTCTATTTTGGGGCCCCACCC
GAACCCAGCTAGCCCTTTGAAACCCCCAGCTGGCCCTTTTCCCACCTTTAGCTTCTAAATATCGC
TTACTTCCATGAAGGTAGAACATATAAGAGAAAGGATAGTTTCACTAGCTATGTCCTTTATTGAC
CTTCCTTTATTTACCCCCCCTTATTTACTTTACCCTTAATTACCTTCCTGCCTTTACCCTTATTA
CCCGACCTTTATTGACCTACCATCCATCACTCACCTGGTAACAAGTCCACCCATTCCTACCTAGC
TTGAGTTAAAGTCTGCCCTATCACCTACCCTAACTCACCTACCTTGGGATCATGCCTGCCTTCTC
ACCATAGCTCCCCTCAGGCCTCCCACCTATCTTAGCTCAGTGATT
Found at i:965482 original size:24 final size:23
Alignment explanation
Indices: 965441--965495 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
965431 CTTACCTTAT
* *
965441 CTTATCTTACACTCCTTACTCGA
1 CTTATCTTACACTACTTACGCGA
965464 CCTTATCTTAC-CTTACTTACGCGA
1 -CTTATCTTACAC-TACTTACGCGA
965488 CTTA-CTTA
1 CTTATCTTA
965496 TAGGGTTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 4 0.14
23 5 0.18
24 19 0.68
ACGTcount: A:0.22, C:0.33, G:0.05, T:0.40
Consensus pattern (23 bp):
CTTATCTTACACTACTTACGCGA
Left flanking sequence: Indices 964941 -- 965440
CGTATATTAACAGATTATGGTTCCGAGGGTCATCCATTACGAAAAGACTCCCCCCTGAGTGGATA
TGTGGAAGTACGCTACGATGATCCGGAGAAACGTGTGGTTTCTGAACCAATTGAGATGACCCAAG
AATTCCGCTATTCTGATTTTGCTAGTCCTTGGGAACAAATGGCGCGTAGCGACGGATCGGATAAT
GAATAATCTAGGGCGGGCGAATAGATAGGAAATGCTTGAATGAACGCATCCAGCAAGCCCTTCCA
CTTTTTAACCGGCATAGACACACACACATCTAGGCTCGGAAACTGACTCCACTTCGCATATAAGC
TGGGCGACCTAGATAGAAGGGAACCCCTGACCTTCCTTCGCTATGCTTAGGTAAGGGCCCTATTT
ATTTATTTATTTATTAAATAGGTTATATTTATGAAATAAATAGGTTATACCTTTCGATCGAGGGT
AAGGGGCCACCAGATACTATACTATACGACCTTATCTTACCTTAT
Right flanking sequence: Indices 965496 -- 965995
TAGGGTTATCGGGGGCAGCAATTCCCCCAGTAAAGTAATCACTTTCACCTTGCAGGCAGTAATCA
GAATAATAATGAGCCCCGGGTCGGCTCGGCCTGGGCCCTTCCTTATAAATGCCCAGGTGGGTGCT
AGTGGTGCCTGCCGGTCGTCCCCTACCTCCATCTATTCAAGGGTGGTTAATGGGCTCTTTCTGGT
TTCCCTTATCAGTTGTCGCCCCAGTAAGTCAAAGGTTTCAGCATAATTTGTGACATAACGCATAT
GATTATAATGTCCTGCCCGCTTGCCCGAGAGAGATAAATACGCGAGGGGGAGCGGCTGGCAGACC
TCGCCCCCCCCCTATGAAACCGCAGAGATTGGGATAACCTGTTGGCTCCCAGCCCCATTACATAC
ATTGGCGCCAACAGTGACCCTCCCCCTTATAGTAGTTTCCACGCAAGGTTATACCCCCCCTACCC
TAATAGTAGCGAGGGGAAGGTAGGTATCAGTATAATATAACCTTA
Found at i:966689 original size:20 final size:20
Alignment explanation
Indices: 966646--966691 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
966636 TGCGCTCCTT
* *
966646 CCTTCCTACCCACCTACTTT
1 CCTTCCTACCCACCTACCTA
*
966666 CCTTCCTACCCACTTACCTA
1 CCTTCCTACCCACCTACCTA
966686 CCTTCC
1 CCTTCC
966692 CTCTGTCCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (20 bp):
CCTTCCTACCCACCTACCTA
Left flanking sequence: Indices 966146 -- 966645
TGGGGAACTGGTGTATGAAGCCAGCCCAGCTTCTGCCCGACACTATATTACTTTCGATAATAACT
CCCTCCCATACATAGGCATCGGATAGATTGCATCCACAAACACTATCATCGGCCCCTGGTCTCTA
TCCAACCTTTCCAGAACATAATTTGTTAGGTAATTTGGCATAATTACGGCAAGATCGATCTATAG
TGACAGAATGGAGGTAATTACGGCAACTATGATACTTAACTCACTATAGATGAGTGACAGGAAAG
GGATAACCTTACCTTCGCGTAGGGAGGGTAAGCCACTTACCTGAGCATAGCGAAGGTAGGGTTGT
CCCAACCCTTCGCTACGCTTACTACTCTGCCCCTTAAGGCGATTACTCGACCTTCCTCCTTCCTA
CCCTAATGGGACCTTCCTTAACCAACGATTATACTGCACGCTTACTTTGGAAGACCTAAGGACCT
AACTGTGAGCTCTTGGTTGGCGGACTTCCAGAATTTGCGCTCCTT
Right flanking sequence: Indices 966692 -- 967191
CTCTGTCCTCTGTTAATAAAAGGACCTATCAGGCCCTTTCCGCCCGCCTGTAAGGACGGCAACCT
TAGCTCAGGCAATGCCGCCTTCCTTTTCAGGCAGGACCAACCCTTCCTTCCAACCAACTCAGGTT
AGACCTCCTTTCAGGACCTTGCCTGAGCTAGCTCTAATAGACCGACCTGTCCCCTCTAACTTAGA
GAATACTATAAGGAACGTTCCCCTGAAAATACGGTGTAAGGTTGGTTCTACCTACCTGGAAAGGG
TTATACCTTCCCTTCGCTATGCTCAGGTCCAAGACCATCCTTGAGTTGAGAGAAGGGTTATACAT
TCACTTACGTACTTCTCTTTCATTATCTCAAGCAGGCTATAAGTAACCCCACCCCTTACCAGAGC
TGGAAGGGAAAGGTATTACCCTCGCTAATTGACCCCGGCTAAATGCCTTAGTCCTAATAGATATA
GGAACAGACTTCGTACTCGGCTAACGCTATGTAAACTGATCTCGC
Found at i:967336 original size:9 final size:9
Alignment explanation
Indices: 967324--967350 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
967314 CTTATCCGAC
967324 TTACCCTCA
1 TTACCCTCA
967333 TTACCCTCA
1 TTACCCTCA
967342 TTACCCTCA
1 TTACCCTCA
967351 GTAGGGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33
Consensus pattern (9 bp):
TTACCCTCA
Left flanking sequence: Indices 966824 -- 967323
ACCTCCTTTCAGGACCTTGCCTGAGCTAGCTCTAATAGACCGACCTGTCCCCTCTAACTTAGAGA
ATACTATAAGGAACGTTCCCCTGAAAATACGGTGTAAGGTTGGTTCTACCTACCTGGAAAGGGTT
ATACCTTCCCTTCGCTATGCTCAGGTCCAAGACCATCCTTGAGTTGAGAGAAGGGTTATACATTC
ACTTACGTACTTCTCTTTCATTATCTCAAGCAGGCTATAAGTAACCCCACCCCTTACCAGAGCTG
GAAGGGAAAGGTATTACCCTCGCTAATTGACCCCGGCTAAATGCCTTAGTCCTAATAGATATAGG
AACAGACTTCGTACTCGGCTAACGCTATGTAAACTGATCTCGCTACCATCCCGTATCTACCATAG
CTAACGAATGGATTGCAGCATGAGGCGCTATATCTGCACTGCCTAATGCCTCTAACCCTTAGGGA
GGCTTATCCCTTCGTTGCTGCTCCCATCGGAGTTTCTTATCCGAC
Right flanking sequence: Indices 967351 -- 967850
GTAGGGTGATTGAACCGAGTAGGTGGTAATATTGGGGGTTCAGTCCTAGGGCCCCTCACTGGTAC
CTGAGGAAGCTTAGCAGACTTCGATTGAATCTCTTCTCGTAGTTTAGCTGCTGATTCTTCTGACA
GCGCCTCGGACATCAAATAATTATATTGCACCATATCTTTATTTTCTAACTGCTTATAGAAATCT
TCAATCTGCTCATCACTTGGAATAGCCTGGCTATCCATCTGCGCACGTAGTATTTCTACGTCACG
ATCTTTCTTGTCTAACTGCGCACGTAGTGACGCTAGTTCTGAAGCATATACCTTATCTTTATTGT
CTAACTGCTTCTTCAGATCTTCAATCTGCTCATCACTTTCCATAGCCTTGTTAGTCAACAAATTA
TAATCCACCATTTTCAGCTTCATATGATCAGCGGAACTAGCTGATTCATTATCTTTCTTGTCTAA
CTTCGCAGTTAGTTTAGCAAGTGATGACTCCAGCATAGCCAATCG
Found at i:967919 original size:54 final size:54
Alignment explanation
Indices: 967856--967970 Score: 230
Period size: 54 Copynumber: 2.1 Consensus size: 54
967846 AATCGTTGAC
967856 CATATTCAGTCTTATTTCTCTCATTTTCTACCTCCAGATTGAGAAGTCTATGAG
1 CATATTCAGTCTTATTTCTCTCATTTTCTACCTCCAGATTGAGAAGTCTATGAG
967910 CATATTCAGTCTTATTTCTCTCATTTTCTACCTCCAGATTGAGAAGTCTATGAG
1 CATATTCAGTCTTATTTCTCTCATTTTCTACCTCCAGATTGAGAAGTCTATGAG
967964 CATATTC
1 CATATTC
967971 TTGATCTTGC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.24, C:0.23, G:0.12, T:0.41
Consensus pattern (54 bp):
CATATTCAGTCTTATTTCTCTCATTTTCTACCTCCAGATTGAGAAGTCTATGAG
Left flanking sequence: Indices 967356 -- 967855
GTGATTGAACCGAGTAGGTGGTAATATTGGGGGTTCAGTCCTAGGGCCCCTCACTGGTACCTGAG
GAAGCTTAGCAGACTTCGATTGAATCTCTTCTCGTAGTTTAGCTGCTGATTCTTCTGACAGCGCC
TCGGACATCAAATAATTATATTGCACCATATCTTTATTTTCTAACTGCTTATAGAAATCTTCAAT
CTGCTCATCACTTGGAATAGCCTGGCTATCCATCTGCGCACGTAGTATTTCTACGTCACGATCTT
TCTTGTCTAACTGCGCACGTAGTGACGCTAGTTCTGAAGCATATACCTTATCTTTATTGTCTAAC
TGCTTCTTCAGATCTTCAATCTGCTCATCACTTTCCATAGCCTTGTTAGTCAACAAATTATAATC
CACCATTTTCAGCTTCATATGATCAGCGGAACTAGCTGATTCATTATCTTTCTTGTCTAACTTCG
CAGTTAGTTTAGCAAGTGATGACTCCAGCATAGCCAATCGTTGAC
Right flanking sequence: Indices 967971 -- 968470
TTGATCTTGCTCGTCTAACTGCGCCTTCAGAATCTTATTCTCATGTTTTAGAATAGAGAGCTCAT
CTCCACCGAAGTCAAACACTTCCTTAGGAATAGTGTCTACCCATACATTGTTATCATCATAGACG
GGATCTCTTTTAGTTCCCACAGGGATTCCAAGCTTGACTTGCATACTCATCTTGGCAATGTCAAA
GGTTTTCCAATCGATACGGAAATTAGAGACCACTGTGACCTGTTGAGTTCTAAACAGATCGGCGT
ATTGCTCCTGGAACCATTTTAAACTGACACTTTGTTTAGCGAGCCCCTTGTGCTTAACGATATCA
CCAGATTGTTTAGTTTCAAGTGCATAACTCTTGCCACCCAAGAAAATGCCAGTATTTAATTCATA
CTCCAACTTTAACTTGCCCAATTCTGTGGAAGAAATCTCTTCTTCTGGAAGTGGACTACCTAGAA
CAACAGAGTCAGTATCAGTATAGTAGCAGTCTGGTCTAGAGATGT
Found at i:969656 original size:25 final size:25
Alignment explanation
Indices: 969628--969677 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
969618 TTGATGTTCG
969628 TATTTGGGTTGACTAAGTTTCGCAT
1 TATTTGGGTTGACTAAGTTTCGCAT
969653 TATTTGGGTTGACTAAGTTTCGCAT
1 TATTTGGGTTGACTAAGTTTCGCAT
969678 CAAGGTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.24, T:0.44
Consensus pattern (25 bp):
TATTTGGGTTGACTAAGTTTCGCAT
Left flanking sequence: Indices 969128 -- 969627
CCCTTCCCCCTCGCTACGTACGCGAGGGGGGAAGGTATAACCTTCCTTCCTTCTCTCTCTCACCC
TCCGATGATAGATAAAGAAATGTTGGGCGAGACCGCTAGATCGGCAATATATTCTTTGGATAATC
CTTCCGAAAGCTGAGAAAGCGACACATAACGTAGGAAATTCGGAAATCCGGATTATTGGAGAGGA
TTGGGAAAAACCCCAATCCCACCATAAATGACGAACTCCGTTACCCATATGATAGCGCGGCGCTA
ATGAAGTGAGATTGACTAAGCTTAGAGTGAACTTCGGGAAATTGACGGATAAACCTGAGGCAAGT
TGGTAGAGATTCTCATAAGTGAGGCTGATAAAACCTATTTCCGGGCCAAAAGGGGGACTGAACGA
AACCATAGTGGCTAGGAAAGCCCCGGGGATTCTATGGTAAATTGGAAACGTCGGAGTAAACTGCG
GCTTGTGAATAGTAGGATGAGGTGATAACGGCCGATTGATGTTCG
Right flanking sequence: Indices 969678 -- 970177
CAAGGTGAAAGGATTCGAACCTAAGGCGCTCTGTACCCAAAACAGATGCGCTAACCGGACCGCGC
TACACCTTGTCTCACCCCTGCTAATCCCAATGAAGATTCCTTCTATCTATGCTATGAATGCGGAT
GTGTGTGATCGATGAACACAAAAACCCCTCGCTTCTCATTTGTTTGGTCCGGAACTTGCCCTTAC
CTTCCTTCGCTATGCTCCTTGAGGGAAAGAAAGAGTTTGAGGGGAATAAATCAAGGGCGAGGTAA
GATGAAAGAGAAGATAGGTGGTTCGCAGAGTCAAATAGGGAGAATCTCTTATGTATATGGGGATT
CGATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACC
GTGGTATGCGCCAATAAGACCACCCCAACCATAGTGGGCCACACTAGTGGAACATATATAGATAG
GGTGATCATTGGTCTGATGCTTCGGGCGAAATCAACTCCCAGGGT
Found at i:984808 original size:17 final size:17
Alignment explanation
Indices: 984786--984820 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
984776 TCTTTTATTG
984786 ATTAATACCCGAGTCAT
1 ATTAATACCCGAGTCAT
984803 ATTAATACCCGAGTCAT
1 ATTAATACCCGAGTCAT
984820 A
1 A
984821 CCGGTCAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (17 bp):
ATTAATACCCGAGTCAT
Left flanking sequence: Indices 984286 -- 984785
GTATAATATGTAATTACTCCTAATAGATAGTCTAAGATTAATATAAAATATAGAGTATAGAGAAG
ATAGCTAATGAGTTTTTATTCCTCATTCTAATAAGACTAATAATTATTTCATTACTAACTTATTC
GGTTGGGTGAGATTCCTAAAGTTATCATGGAGGAGCCAGCCAACAAATAGAGTACAATACCAGCA
AGAAGTAGGGAACTTAAGTAGTAGTAGTAGTATCCTACTAAGGAGTAATATACTAACTAACCAGT
AGCTTGAGTATGCTAAGGAGTAATAAATCTAGCTAAAGCAGTTCGGGGAGATGCCCTATAGCACC
AAGTGGGTAGGAGGAGTGCTTGATGGAGTAGGAGGAATACATAGGTCTTACTGAGGAGCATGCTA
AGCGGATGGGTAGGGCTAAGGCGAGGTGAGTGAGGGTAGCCATGGGATATGCCTTAGTCAGGGTC
TACAAGGGGATTCCTAGGGTGTTAAGTAGGAGTTCTCTTTTATTG
Right flanking sequence: Indices 984821 -- 985320
CCGGTCAGCTCTAGGGGTCCAGGGGAGGCCCCTTGATGCAGTCAATCAATGAGGAGGGATGGACG
GCTCAGCAATCAATGATGGCTAGGAGGTTGGTTGAATCGTACTGATAAGAACATGCATAGGGTAA
GAAGTGAATGCATGTCTGTTGGTAACCTAGCTAGAATCAATGATATATGGGTCAATCATCATACG
TTGATAGCTGCTGTGTTGCTCCCTTAGACCAATGACCCCCCTTCCGTTTGGGTTTTGTCTGGTAT
AACTGAGTCCTCGGTCGCCAAGTTCTCATACATGATTTCATGATGCGATTGAGGTCTCATTCATC
AGAGTAAAAAGCATGTATTATTAGACGATGCAGTATAAACACAATGTGATGGTTCCTGTATGGAA
TTGTATCTCCTACAATAAGTAGGTAGGAACAAGAAGATTCAATAGGTAGGTAGAACCCAGGAGAT
CTTGTATATAGATATAGATTATGGTTTCCCCTGCTAATATGGTTG
Found at i:997447 original size:25 final size:25
Alignment explanation
Indices: 997419--997469 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
997409 AAGTAACTTC
*
997419 GGAACGAAGTCGCTCGACCATAAGA
1 GGAACGAAGTCGCTCAACCATAAGA
*
997444 GGAACGAAGTCGCTCAACCGTAAGA
1 GGAACGAAGTCGCTCAACCATAAGA
997469 G
1 G
997470 ATAGGTAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.24, G:0.29, T:0.12
Consensus pattern (25 bp):
GGAACGAAGTCGCTCAACCATAAGA
Left flanking sequence: Indices 996919 -- 997418
CTCGCCCTCCTTTACTTAAGGCTTACCTACATCAGCTCCTTGGAGGGCATAACCCTCCCTTTCCA
TCCAGCTATATATGAGGCAATACAACTCAAGCTTAGGGGAGTGCCGGGATAAACCTATTAGATTG
CCATTTACGCCCGCTGTAAAAACACTTTATTTTTATCTGACCCTTGCCCAGATCTTTCGAGGATA
GGTTCGAACTGGTTCTTCAGGCAATACAGATAGACTTGCCTAATTAAGAGAAATATCTTCCATCG
CATCACCAGAAAAGAAATCCCCATCTCAGCTCTCATGCCCAGCTAAGCAGATCTGTTTCGTGAAT
GGACTATCTAAACTAATGGCCTCTGTAACGAGGGCCTTCCCATCGCGCTTAAAGCGCTTAGTCCA
CTTAGACACCACGCTCACCTTAAAGACAGCTAGCCATACTATATTATATTGTTGGTAACTATCTA
TATGATATAGGACCCTACTATTATAATAAGTAAATAAGTAACTTC
Right flanking sequence: Indices 997470 -- 997969
ATAGGTAGATAGGGGCTGTGTCCCAACCAGCCAGCCTGCTAGCAATAGATGCGCCCACTAAGTAA
CGCTGAACCCATTCATTCCTGCTGCGATAGGCTCTTTCTTTCCCTCTCCCTGTCTGTCTTCTTCC
CATCCATCTCTATTTTTTTTTGTTACGTTCACTGATCCAACTTTCAATACGTTACGCCTTACCTT
ACTTATTTGACTTACTCGACTTACTTACCGGGTTCAAATAAGAGGGTGGGTGGGGAGAACCAATT
TCATTTAAAGAGGAGGGATTTTGGCTTTTGAGAGGGATTTTATAAGATCGCCTGAGACTCTCTTT
CTTTTATTCTTTATCGTCGTACCCTAATAGCGTAATATCGTATACAAAGAGATATCTCATTATAT
ATTATATATGTAATTATGCTTGCCTTATTACTTGAAACGAAGGCGCGAAGCGAATTCACCGAACC
TCCTGTTTCATATATATGCCAAGGGGATAGATAGGATTCATAACA
Found at i:1001005 original size:25 final size:24
Alignment explanation
Indices: 1000967--1001021 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
1000957 GGCTAGAGTC
*
1000967 TTCA-GGGAGGGGAGATATAGAGCCA
1 TTCAGGGGAAGGGAGAT-T-GAGCCA
*
1000992 TT-AGGGGAAGGGAGGTTGAGCCA
1 TTCAGGGGAAGGGAGATTGAGCCA
1001015 TTCAGGG
1 TTCAGGG
1001022 AGGTACCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 8 0.31
24 6 0.23
25 12 0.46
ACGTcount: A:0.27, C:0.11, G:0.44, T:0.18
Consensus pattern (24 bp):
TTCAGGGGAAGGGAGATTGAGCCA
Left flanking sequence: Indices 1000467 -- 1000966
TCTCCTAAGATTCCTGGCAAGTGTGAACAAAGCATCTTCCGGCTCTGTCTGGGCATCAATCCATC
CATATCCCTCCTACCTAGCAGTGATAAGTCTGTTCCCATCATCCCATCCCAAGGAGGCTCGCTCT
CTGATGGACCATAATAAGCTATCCGGCAGTTAAACAATATAAGCTAAAGGGATCTAATAGAACTA
AGAATATTTCTTTCATATGGAGTCTTCTGGCAGTAATTCATGAATCCATAGGAGAGTTCCGATCT
GACGATCCAACAATGGGTGCCCGGTTGTTAATCCAACTGCCTGCCTGCTATTGTATGATGCATTA
GGGGTGCAGCGAACTCAATTTTATAGTAAACTCGCTTCCTTTCATAATTCCCATAGCCTTTGCTT
GGTCCTGGGCGCCTGCCTGAATTGCAAAGTAAAGGGGGTACGAGTATTCATCCTTCATCGAGTGC
CAGAACGATCATACACAAAGAGTCCTCAGATAAGGGGCTAGAGTC
Right flanking sequence: Indices 1001022 -- 1001521
AGGTACCAATTCCCCTAACTTCTTCTCCACCCAGTACATGTTTCCGAGGGAAGGCCCCTTTAAAT
CCATACCCGACAGAGAACCATACCCCGGGAAAGGGTCTATGTGCTGTGAACAATTGCTATGTGCA
TGGGACCATGGCGGCTATGTTAGCGATACCTCACACCAAGAGAAAGTTACTAATGCTCATTATAT
ATGATTCACCGGTTTCGGATTTTTCCAGTTTGGAATGGAGTGGAAAGGGGAGGCGTTGAGGTGTA
GGGCTCCAGTTGATGGTATCCCGATTCAGGTTCTCCATCTCTGCATTCTTTGCATCCGAGCAAAG
GTCAGGTCTACTAAGCAGTGGCTCCTAAGGGATTAATTAAGTCAATGTTATAGGTCAGGTAATTA
ATTAAAGTGGGTAAATAGTTTGTGTGGAAACAAGGGTAAGGTAGGGAGTAAGGGGTTCATAGCAT
GCCTACCCTACTGAGATTTGATTCCTCGTTTTCTGGCTGAATCAA
Found at i:1001022 original size:23 final size:25
Alignment explanation
Indices: 1000967--1001022 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 25
1000957 GGCTAGAGTC
*
1000967 TTCAGGGAGGGGAGATATAGAGCCA
1 TTCAGGGAAGGGAGATATAGAGCCA
*
1000992 TT-AGGGGAAGGGAGGT-T-GAGCCA
1 TTCA-GGGAAGGGAGATATAGAGCCA
1001015 TTCAGGGA
1 TTCAGGGA
1001023 GGTACCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 12 0.44
24 3 0.11
25 12 0.44
ACGTcount: A:0.29, C:0.11, G:0.43, T:0.18
Consensus pattern (25 bp):
TTCAGGGAAGGGAGATATAGAGCCA
Left flanking sequence: Indices 1000467 -- 1000966
TCTCCTAAGATTCCTGGCAAGTGTGAACAAAGCATCTTCCGGCTCTGTCTGGGCATCAATCCATC
CATATCCCTCCTACCTAGCAGTGATAAGTCTGTTCCCATCATCCCATCCCAAGGAGGCTCGCTCT
CTGATGGACCATAATAAGCTATCCGGCAGTTAAACAATATAAGCTAAAGGGATCTAATAGAACTA
AGAATATTTCTTTCATATGGAGTCTTCTGGCAGTAATTCATGAATCCATAGGAGAGTTCCGATCT
GACGATCCAACAATGGGTGCCCGGTTGTTAATCCAACTGCCTGCCTGCTATTGTATGATGCATTA
GGGGTGCAGCGAACTCAATTTTATAGTAAACTCGCTTCCTTTCATAATTCCCATAGCCTTTGCTT
GGTCCTGGGCGCCTGCCTGAATTGCAAAGTAAAGGGGGTACGAGTATTCATCCTTCATCGAGTGC
CAGAACGATCATACACAAAGAGTCCTCAGATAAGGGGCTAGAGTC
Right flanking sequence: Indices 1001023 -- 1001522
GGTACCAATTCCCCTAACTTCTTCTCCACCCAGTACATGTTTCCGAGGGAAGGCCCCTTTAAATC
CATACCCGACAGAGAACCATACCCCGGGAAAGGGTCTATGTGCTGTGAACAATTGCTATGTGCAT
GGGACCATGGCGGCTATGTTAGCGATACCTCACACCAAGAGAAAGTTACTAATGCTCATTATATA
TGATTCACCGGTTTCGGATTTTTCCAGTTTGGAATGGAGTGGAAAGGGGAGGCGTTGAGGTGTAG
GGCTCCAGTTGATGGTATCCCGATTCAGGTTCTCCATCTCTGCATTCTTTGCATCCGAGCAAAGG
TCAGGTCTACTAAGCAGTGGCTCCTAAGGGATTAATTAAGTCAATGTTATAGGTCAGGTAATTAA
TTAAAGTGGGTAAATAGTTTGTGTGGAAACAAGGGTAAGGTAGGGAGTAAGGGGTTCATAGCATG
CCTACCCTACTGAGATTTGATTCCTCGTTTTCTGGCTGAATCAAT
Found at i:1007606 original size:22 final size:22
Alignment explanation
Indices: 1007554--1007600 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
1007544 GTTATCCTAA
1007554 GTCACTTAACAACGTCCTTAAC
1 GTCACTTAACAACGTCCTTAAC
*
1007576 GTCACTTAACAACGTTCTTAAC
1 GTCACTTAACAACGTCCTTAAC
1007598 GTC
1 GTC
1007601 CTTTAAGTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (22 bp):
GTCACTTAACAACGTCCTTAAC
Left flanking sequence: Indices 1007054 -- 1007553
ATCAACTGACCATGAGAAAGGTTACAAGTAAAACATCCAGGGATAAATACCTTAAGGGGATATTC
TTATCACTCAGGCATGGTCAATAGATCAAATCATCCATTAAAACAAGCATCATCCCCACATGCTT
GTGAAGAGCCAATGTTTCCCCCATCCTCCAGTTGCTAAAGCAATACTAAAATGGTAAAGGATTAG
GAAAGGACAATTCCACTAATTTTGATAACATTATAAAATGAAAAAAATATAAGATTGATGAACGA
GGGTGTATCTAGGATCCTTGCTTGGCTTCTTTCTCCATCCATCTAGTATTTTACCCCCTCGTCTA
TGTTCCCTTAAGAAAGTATCAGCCTCTTTGGGGTCATAGATTCTTCCCCCAATCGACAAACAAAA
CATATAATTCAAAGCCACAACATCGTTCGTAAATCTTCCAATCAAACAAAGAGAATTAGTTTTTC
GTTATACCTTTGACTTATTACCTGTGACTTTGACTGTTATCCTAA
Right flanking sequence: Indices 1007601 -- 1008100
CTTTAAGTCCCAAACATTTCATTCCACACACCTTCAGTTATGGTGGCTCCGCCCAGTACTTACCA
CAAACGTGCCTATGAATGGCTCCGCCCACTCCTTACCGCGATTGAAACAGCTCTGAGGAACAACG
AGGAATTAAGCAGTTGGAGAATAGAAAGTAAAGATGCGGTCTTCCCGGCCCACCCACGCTTCTTT
CGCAGAGGTAGTCGAGGGGGGCTCTCTGTGGAGCGATAAGCGAACCCCCCGATACGGAGCTGGGT
TAGGATCACACGACTGATCGGGATCACACGACTGACCTTTTCCTTCGATTGAACTTCTTTCTTCG
ATTGAAGAGAGAAAGAGTTTCCTTCCGAGAGATAAGCCGAGTTGGTTATCCCTTACCTGATACTT
TTCATTGAGGGAAGAAGCTGACTAATTAGCTCATAAATAAACTCTCAGGTAATAGCTTAACAAGC
TTTGAACACGAACTATCACGCGAACTATTAAGCTATTTGGTAGAG
Done.