Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_071216
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1174803
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
File 2 of 4
Found at i:350566 original size:17 final size:17
Alignment explanation
Indices: 350544--350580 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
350534 TCATGAGTAT
*
350544 TAGTTCCTGAGTTGCTG
1 TAGTTCCTGAGATGCTG
350561 TAGTTCCTGAGATGCTG
1 TAGTTCCTGAGATGCTG
350578 TAG
1 TAG
350581 CAGGGATCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.30, T:0.38
Consensus pattern (17 bp):
TAGTTCCTGAGATGCTG
Left flanking sequence: Indices 350044 -- 350543
AAACTTACTCTGGATATTAGGTAGGTCTACTTTGCTTTTCGATCTGAAAAAGAGGGAAAAAGGGA
GGGATAGAAGAGCCGGAGATCCCACTTTGATGATGAAAGATACGACAAACAAGAAGTCAATCCTT
GATTAGGAGTTTTCAGTGGTATTGACAAAATGGAATGTGGAAAGGGGGGATATTTCTACTCTGAT
TCTACCCCCATTCCATCCTCCCTAAAACTATTTTATCTTTTGGTTGGGCTGAATCAACTAATCTC
ATTTATCCAAGAGGCAGGCCCGCCGCACCCCCAATAAATCTTGCACAATGTTTTTTCCCTTGGCT
TTAATTTCAGGGGAGGACTAAAATGAGTGAGAAAGAGGGATCAGAGCGGAAAAAACGATTGATTT
CTCTCAATAGACCAGCTAAAGAACCGAACCACGAAATAGCTAACACAGGCACTGTGGAAATAAAT
AGAGGTCTTTAGTTACTTCTTGCCTGCCTGAAAGATCATGAGTAT
Right flanking sequence: Indices 350581 -- 351080
CAGGGATCCCACATATATCCTACTATTTGAAGGAGTGAGTGACTTCTGATTGGCCTGAGTGAGGT
AGTCAGTTTAAGAAGTCGAAGTGATAACCTTACCTTTATTCAAGCAGGCCCCTACTCCAATAACT
AAAATTGTTGAGGGAAGGCAGAGAAATAACTATATGATAGGGTGTTGATAGAGTTTCAATTCGGA
ACCGGTCAAGTGCACTTGTAAACGAGTGATGGGAGAAGAGGTTAAAGGGAAAGGTTTCACGCTCC
CTATTGGGCATGCATTAAAAGCCCCCCCAGCAGTTTGATCAATCAAGTTCTAAGGTAGTGGGTTG
TCTTCGATCTTGAGACCTCTTCTTTAGCTAAGAGTTTAGAAAAGGTCTTACAAGCCAGAAGAGCT
ACGCGTAAGTGCCTTACAAGGCAAGGCGCAAAGATTTGAAAGCCCAGCTACGCGTGATAACCCTG
AATCCGCTACGAGGGATAGATAACGCTACTATTTTCTTTTTCCAC
Found at i:355431 original size:19 final size:19
Alignment explanation
Indices: 355407--355458 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
355397 GACTGCTGTC
355407 GACCACTGGCTATGGCTAT
1 GACCACTGGCTATGGCTAT
*
355426 GACCACTGG-TATCAGCTAT
1 GACCACTGGCTAT-GGCTAT
* *
355445 GATCACAGGCTATG
1 GACCACTGGCTATG
355459 ACTACTGGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 3 0.11
19 21 0.78
20 3 0.11
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (19 bp):
GACCACTGGCTATGGCTAT
Left flanking sequence: Indices 354907 -- 355406
CAATTACGGATATATTCTTAAACCCGGCTGCGCCTTAACGCTCAGATCGACTAGAGCTTTATTAA
TTTCTTATTGAATTTGGTGGAACTGATGCGCGCTCTTTAGCTATTGTATTTTCTACGCTATTAAG
TATAAGCTCTATATGACGTATATAATATCTGTCTATGTGAGGGGGAGTAAGGCTATGTGAGTTGG
AGTTAGAGGTAAAGGGTCGAGGTTAAAGGGTGGAGTTCGAGGGCTATGGCTGCTATGGGAATGAC
CTTATGGCAAAGACTAGCTGCGCTGAGTAGAGCTTCAATGACTCGATGAGTAGAGCTTGTAGAAT
GCCCTTCTAGCTATGACTGAGCTTCTAGCAATGATACTATCTCTAGCAATGATACTGTCAATGAC
CTTCCTTATGGCTGCTGCAATGAGACTGGCTACGACTGTGGCTTATGGGCTCTGACTGGCACTGA
CTGTCTCCAGCCCATGAGCCCAGCCCAGCAGCAATGACTGCTGTC
Right flanking sequence: Indices 355459 -- 355958
ACTACTGGGGCAATGACCGGCAATGAGCACCTCCTGGCGATGATCGACTATCGGCTGCTACAACC
GCTGGCACAGACCCTCTGGCTATACCTTCTGGCTATTATACTAGCTATTGGCTATGATCAATCGG
CTATGATCGGCTGGCAATGACCACCCACCTCTCTTCTTTCCCTACCTGAATGGCTCTCTCTAGTG
ATGGCTCAACTAACCTCCCCTGTCTCTCTGTGTATTGCGTGTGTTATCTCTGTATGTTGTGTGAA
ACCTCTGTAAGGCGTATGATCCTCAACAGGTGCATTGTACCTTATCATATCCTGGGATTATGTCC
TCTCTCCCGGGTATGTTGGGGACATTTCCTCTGTCGGGCATGGAGACGGGGCTATTTCCTTTTTA
TCGTCCAGTGATGATGACCTCTTTATTGTATGGGTGGTGGATATGTATGCTCTATGCAATGACCG
CACCTTGAGGCTATGACCGGCTATGATTGGCTGACAATGGCTATC
Found at i:358512 original size:35 final size:38
Alignment explanation
Indices: 358443--358516 Score: 109
Period size: 35 Copynumber: 2.0 Consensus size: 38
358433 AAATTCACTT
358443 GCTTCAGGAAGGACCTCATATTATCACAATGCTCCTGG
1 GCTTCAGGAAGGACCTCATATTATCACAATGCTCCTGG
* *
358481 GCTTCAGGGAGGACCT-A-A-TCTCACAATGCTCCTGG
1 GCTTCAGGAAGGACCTCATATTATCACAATGCTCCTGG
358516 G
1 G
358517 TGGGCTCCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 17 0.50
36 1 0.03
37 1 0.03
38 15 0.44
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (38 bp):
GCTTCAGGAAGGACCTCATATTATCACAATGCTCCTGG
Left flanking sequence: Indices 357943 -- 358442
GACTGTAGTCCAACTTGGCTGTCAACACGAATTGGTCTGACTGTAGGTCCCACTGCACTGTCTGA
CTGTCTGGGGATGGCCTGAACGTTCCTTCAGGATGGGGATGGCCATCCAAAGTGTTGATGGCCCG
TGTTGGGATCTTCAAAGCATCCCGTCAAAGGTAACTCACTAACTTGGCATCCGTGGGAACGCAAT
ACCCCGACCAGGTCTCTATCTATCCGTTGGCTTTCAATCTTCAAAGCATCTCCGTCACTGGTAGG
GCCGCTTTGTCTATCTATTGGTTAGGACCGCCTATTGGTTGGTAGGACCGCATATACCAAGCAGT
GTGTGGTGGGCCTCCCGGTGCTGGTTCCTCGCCCGCTGGGCACGCATACCTCGCAATGGCTCTAT
CTCTAAGTTGGGACAACGGGTAGGTGGTGTCCCCGCCCGCTGGACAACCATATCACTAAGTGTTT
TAATTCAATCGTAAAAGCATCCCGTCAAGGGTAATAAATTCACTT
Right flanking sequence: Indices 358517 -- 359016
TGGGCTCCTGGGCTTGAGGTTATAGCTATTCTAACTAGGCTTGGTTCTGTCTCTTTGTCCTTCCC
TCCAGGCTCTATCTTTCTTTCGATATTCTTAATGAATTCCGAACCGACAGCTCAAGCAGCTCAAG
TACGAAGCTGATACACGTATCAGAACCTTAATATATGGGATATTATGGGATATTCGTACCAAAAT
ACTAAATGTGATGCATGTAAATTTGCCTTCTTGCCCTCAGAAGGACAAGCGGCTTCGCTCCTGAA
AAGCCAATATTGAGTAATGAAAAGTTCAAATTAGTACCCGCGATGAGTCAAGGGCCCCCCCTGAA
AAGAAGATTTATATTAATAAGAATGCCAATTTAGAGAGTTGTGTTAAATATGTTTCAAGTTGTGC
CTGCTTCGAACGTTGTAGCTTAGTCAAAAGCGTCTAACTCCCCATAAAGGTATAGGTGTGGTAAG
TGCACCTTATCTACGAGCATATCCATTTTTGTTTTCACGTCCCGT
Found at i:364211 original size:18 final size:18
Alignment explanation
Indices: 364188--364224 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
364178 GCGATATGGA
364188 TTTGGTTAGGA-CCTTCCC
1 TTTGGTTA-GACCCTTCCC
364206 TTTGGTTAGACCCTTCCC
1 TTTGGTTAGACCCTTCCC
364224 T
1 T
364225 GGGAGGGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.11, C:0.30, G:0.19, T:0.41
Consensus pattern (18 bp):
TTTGGTTAGACCCTTCCC
Left flanking sequence: Indices 363688 -- 364187
CAGTTTTTTGGACAGTAAAGGGCGGGTGGTTGCTTCAGTGATTGCCCTGTTCGGATGCCCGGACA
TACACTAAGTTTCCCATCGTTCCTCTGTTCAGCGGTGGATAGATCTGTCCTGTTTTTAAGGAATG
CGATTATTGGGTGATATTCCGTGGTATCTACCCACTCCAACTCCCATAAATAACAGCTAGTGATT
GAATTGAGTGAATCGAAGCTGCTTTTAATCACGATAATTAATGTAGGGAGTGGTTAGTATAGGGA
GAGGTAAGGATCGGATAAGGATGCGAAATACCGTTGTGGAAGAGGTACGTGAAAGGTCTGCCCTT
AATATAACCATTAAAACCTCATCACCGGATACCTCGCCGGGGATGTTTCCTTTTCCTCTAGTAAA
TATACCCGGAACCCTATTCCGGCGATCCGGGCTATATACTATTAATAAGTATATTGACTACGGTT
ATAAACAGAGATAAGGAAGTGAAGGGGATAAGGAAGCGATATGGA
Right flanking sequence: Indices 364225 -- 364724
GGGAGGGTTAGGTAATCTTTAATCCAGAGTCTCTGGGCCAAGGAAAGACATCTCACAAAGAGGTA
ACGAACGAGATTCAGGGATACCCGCTGAGAAGATAGGCAGGCCGCTTTCTAGATAGGAAGGAAGG
CTTAAGATAATATATGGAGGTCTCTATCCGGCCCACCTTTCGGATCTTCATCTTATTTTGGTACC
ACGCTCTGGCTATTCCTTGGTATTGCACTTCCTTGGTTTCCTTGGTGGAGCTACTGGATTTATTT
TATGTAAATACGCCTTTCCCCCTAGTTCGCCCTTTCACCGTAGGGGCATATCTAATTCAACATGC
AGAGGTGAAGTATCTCCCTCGAATGCATGAAGCGATTAAGCCTCATGCGTCTCTCACGCCAAAGG
CATGAGGAAAGACCACTACTCATATAATAACTATACCGACCATACCCAAATGCATAAATAGACGA
TACCGACATGACCCAAAAGCATTAAGCGGAAAAGTCGCCTAATGC
Found at i:368460 original size:23 final size:23
Alignment explanation
Indices: 368413--368460 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
368403 TCGAAGGACC
* *
368413 AGAAAGGACATTTAGCTAAGGAA
1 AGAAAGGACATTGAGCTAAGAAA
* *
368436 AGAAAGGACCTTGAGCTAATAAA
1 AGAAAGGACATTGAGCTAAGAAA
368459 AG
1 AG
368461 GTGGCTTATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.25, T:0.17
Consensus pattern (23 bp):
AGAAAGGACATTGAGCTAAGAAA
Left flanking sequence: Indices 367913 -- 368412
CGCGCCTGAAATAAGGAAGTAAAAGAAGCAAGCTTCTGAAGCAGCTCCCTTTGGAATGGGGTCTC
CCCGTGCCCATACAGATAGTTGCTCGCTTCATTCTTACGGTAAGAAGAGGAACGAAGTACTCGAC
CAACGCCTTATATTTGGTTGGCCGTAATTGAAACCCTTTTTAGGGACCTTATTACCCTTCGGGGA
TTCTTAGGGAGGGACCGTAAAGCTCGTAAAGAAACACATTCTCGTCAAGCCTGTCCTGTAAAGCC
CATTCTCGTCAAGCTCCAGACTCTCTCTAGCCCGTCCCATTATCGTATCTCTTATGTTTATTTAA
GTAGATAGACTCTTACGACGTAGAACAAAGTGAACCACCCAAGGATAGGTGGCCCTGGCTCGAGA
TCATGTCGGTAACTAGAGATAACATAAAGATAAGACATAACTCCTTAAAACGAGCGTGCTTCGCT
GCCTGACTGAGCGGAGCTGAGCAGGGGGTAACCCTTCGAAGGACC
Right flanking sequence: Indices 368461 -- 368960
GTGGCTTATCAAGATGATAAATTGGGTGCCCGGTGAGAAGGGACTATTTCACAAATGCTCCTTCC
TGGGCAGGCTTATTCCGCTTATGAATTTAGACAGCAGGCAGGAACGAAGTGAATAGAGAATATAC
TCCTTAAGGTGTGGTCTGAATAATATACATAATCTTAATTATATCCATAAGTAGTGTCTGAAGAC
TGCGTATCTCCCTTCGCTTCGCATAAGAAACAAAAGATTCCGTTCCGGTTCGTAGAGAATCCATC
TAATCCTAAAGTAAGAAAGTAGGGTATAAATACTATAATCTATAAGACGTTATAAGATTCCCTCG
CATATGAAGGTACCAGGCACGGAGTGGGTTGGGTCGATCCGAAAAACGTATCCAACCGCGCTGCG
TATTTGAGAAATAAAAGTATTGGTGTTTCCGAGAAGGCATATTTTTATTATCCATCTGGGTTTCC
GAACTCGCTTGATTCATTTATAAATTCTTTGCGCTTTCTTTCATA
Found at i:372124 original size:14 final size:14
Alignment explanation
Indices: 372105--372134 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
372095 GCCGGGGCGA
372105 GCTAGTTCCGAGCT
1 GCTAGTTCCGAGCT
*
372119 GCTAGTTGCGAGCT
1 GCTAGTTCCGAGCT
372133 GC
1 GC
372135 AAGTGCCAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.33, T:0.27
Consensus pattern (14 bp):
GCTAGTTCCGAGCT
Left flanking sequence: Indices 371605 -- 372104
TTCTTCATTGAGGAACACGTAAATAGAGATAGAATATAGATAGATATGTATAGATATATCCATAT
AGATATCTAGATATACATTGATCTAGCGATATCTCTTTGTATACGATCTTATTCTATTAGGGTAC
GATCGATGATTCGAACGGAGATCCCATACGATGCTAAAGCGTAATTACATATATAAAGAATGACT
GGAAGAATTGCTCGGTCGCATTAGACAAGGTGCCGTAAGGCCGCCCTGTTGTTAACTAGAGGAAA
AATTGCTCACCTGAAGCATGAGGGTGAGGAATAACTGCATTTGAAGCATTCGAAAGGGCGGGCAT
TCGTTTAACGCTTTCGGATCGCATCAAATCACCTAGTGTTATTACATATATAAAGAATGACTGGA
AGATCGGACTCAAATCGAAGGTTCATTTCGTTGAGATCTTTCTTTCCCTCATAAGGAAAGAAGGC
AAGTGCCAGCAAGAAGCACGCAGTTGCGAGCCAGTGCCGGGGCGA
Right flanking sequence: Indices 372135 -- 372634
AAGTGCCAGGAAGGCATGGCTTGGCTCTTTAACCCTCCTCCTTCTCTCTCTTGCGGGGCGGGTCG
GAGGCACTCGACCAATTGTTCCACCAATGGATGTTCATGACTTATAGTTTTTGATTGGAAGGATG
GATGGCCATGGGTTTTCCTCTAAAGGGCCAGGCCCAAGCGAAAACATGAGGAAGATATATAGATT
GTTTCTTTAGACAGAGACAGGGAAGAGTTATGGGTTTTTACCTCGGTACGCTCTTTCAGAGCTAC
CCTCACTACCCATGAGGTGTTGACTTGTACTTTATAAGAAGGAGACCAGACAGAGACTTTAGGAG
GACCAAAGGGACTCATCAAGCTTCTCTCTTTATCAGGAGGAAAAAGCCATTAGTATACTCCTTGA
ATCTGAATCAGACAAGGAACACCCCTTGATAAAGACCCAAGGTTAAGGCAAGTCTCCATCTTTCT
CTTTATTAAGAGCCATTACCTTGATATCTCCACTTGTCCTTGATA
Found at i:372822 original size:18 final size:18
Alignment explanation
Indices: 372799--372835 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
372789 TTTCACTGGC
372799 ACAGGAGACAGACTACGA
1 ACAGGAGACAGACTACGA
372817 ACAGGAGACAGACTACGA
1 ACAGGAGACAGACTACGA
372835 A
1 A
372836 TCCCTTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.22, G:0.27, T:0.05
Consensus pattern (18 bp):
ACAGGAGACAGACTACGA
Left flanking sequence: Indices 372299 -- 372798
CAAGCGAAAACATGAGGAAGATATATAGATTGTTTCTTTAGACAGAGACAGGGAAGAGTTATGGG
TTTTTACCTCGGTACGCTCTTTCAGAGCTACCCTCACTACCCATGAGGTGTTGACTTGTACTTTA
TAAGAAGGAGACCAGACAGAGACTTTAGGAGGACCAAAGGGACTCATCAAGCTTCTCTCTTTATC
AGGAGGAAAAAGCCATTAGTATACTCCTTGAATCTGAATCAGACAAGGAACACCCCTTGATAAAG
ACCCAAGGTTAAGGCAAGTCTCCATCTTTCTCTTTATTAAGAGCCATTACCTTGATATCTCCACT
TGTCCTTGATAAGAAGGAGACCAGGAACCACCGAAGGTACGCACCTTTACTATGAGCACTTTCAC
CTACCAAAGAAGGAAAAAGGAAACCAGACAGAGACTTTAGGAGCACCAGCGGACAAGCGAAAGTA
TACCTCTTGGTCATGCATCAGAATAGAGACTGGATTTTCACTGGC
Right flanking sequence: Indices 372836 -- 373335
TCCCTTATCACACTAGTCAGATCCAGACAGATACTTACTTTATGCTAGTCAGTACTATTGCTTAC
TCTTCATAATACTGCACACATAAGAACATCATACTGTCTCATACATAATACAATATCACTAGTAA
AAGGGGGAAAGGTGAAGTATCAAGATCAATTTGAAATAAAAAGTAGGGGAGGCTTAAATCTTCTC
TCAGAATTTGAAGAAATAGAATAAACAGATCAAATCTGAAGACTCTTAGATATGCCTCGGGACCC
TAGACAGCCCGGACAGATAAAGATTCTGTCACAGTTGCAGAGACAGGGAGGGACAGAGACAGATG
CAGGAGAGGACACCAGAGCAGCGGGGGCACAGACAGCAGCGGAGCCAGTTGCATCTTCTACTTAT
GCCCGGTTCCATCGATCCATGAATCGAGAGCTGATAGGTTACTCTTACTTCGCATGTGTTGCAGC
TTTCCCCTTCCTCCCGTTGGATTACTTAGCAGCTAGGTAGCCCTT
Found at i:388811 original size:22 final size:22
Alignment explanation
Indices: 388783--388836 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
388773 CCAGGCAAGT
* *
388783 CCAGGGAGGTCCTTT-AATGGCC
1 CCAGGGAAGT-CTTTGAATAGCC
388805 CCAGGGAAGTCTTTGAATAGCC
1 CCAGGGAAGTCTTTGAATAGCC
388827 CC-GGGAAGTC
1 CCAGGGAAGTC
388837 GGCCCTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 12 0.41
22 17 0.59
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.20
Consensus pattern (22 bp):
CCAGGGAAGTCTTTGAATAGCC
Left flanking sequence: Indices 388283 -- 388782
TACTATTAGATAGAGAAGGTTATACCTTTCCCGAGCTACGGGGAAGGGGGGGGCGAGCCACTATT
CCATCCATAAATCCCGACTTCGGAGCAATGGTTTGCCTCTATCCGAACGGGTTTTGTGATAAAAG
ATGATTTCGTATTGAGCTCCAAATAGACGCTATTGGGATGGGTAGGCTCTTACAAGCTTTCCCCC
CCCCCAAGAACCGAACGTGCGAGTTCCCCCGCATACGGCTCAAGTGGCGAGCGAGGAATAGTTCC
CAGGCCCAGCCCCGACCTATTACTCGGGGGTTGGGAATCACTTATTAATCTGTTACGCTATCACA
AAGTTCCACCCTATAGATGGATAAATGGATAAAGGTCCTGAAAGGTCTTACCGGGTGAAAATGTT
CTAAGGTGTTGTGTCCTCTCCTTATTGTATCCTTGTCGCGCGAACACTAAGGCAGTCGTTAGGTG
AGGTAGCTTGGTTACTCTTTGTGAGACGGATATCTCCAGGCAAGT
Right flanking sequence: Indices 388837 -- 389336
GGCCCTTAATTAACGAATGAAGACCTTCACTGTATAACCCATACGCCTATAACGAAAGTAGGCGC
CTAACGAACTACTTAAATGAGTGGGAAAAAGTAGTGGTAGAATAGTGTTATGGAGTTATGTCTTC
TCCTTATGCACTTAGATACCTGGCTAATTACCGAAATTATGTAAATACGTTAAAGAAACACTTCG
TCTAATATGGGGCTTGGTAAGGACTTGCCAGGAGCTATCTGTCTCACTATGCGGTAACCTCGCTA
ACGTTGGCTACCGTATTGACATATTTCATTTCGGTAACTAGGGATAGCATAAAGAGAAGACATAA
CTCCAAAGATCCTTGGCGAAGTGTAACGTATTGACTCATATGATTTCGGTAACTAGGGATAGCAT
AAGGAGAAGACATAACTCCATAACACTATGGAACTGCTAATTTTAGCCAGGCGTTAGGCGAATTC
GTGACATAAGTCCCGGGCTTTAACTGTATGTAGCAAATAGGCCCT
Found at i:390894 original size:21 final size:21
Alignment explanation
Indices: 390861--390901 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
390851 GGCAAGTCCA
*
390861 GGGAGGTCCTTTAATGGCCCC
1 GGGAAGTCCTTTAATGGCCCC
*
390882 GGGAAGTCTTTTAATGGCCC
1 GGGAAGTCCTTTAATGGCCC
390902 ATATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.24, G:0.32, T:0.27
Consensus pattern (21 bp):
GGGAAGTCCTTTAATGGCCCC
Left flanking sequence: Indices 390361 -- 390860
GAATTGTGCCATTACGTGGTGATGCGCTGGCATGCATAATGGTGGGCGTTCCCGCTATCATTTTC
GCTATGGTAAGATGAATGCGAATGGGGAAGGTTCGATTGCTTGCATTGATCGAAACATTTGCGAC
AGGTCCTAGCAAGCATTAGCATGAGCTCGTTGACGCCAGCTCTAGGAGAATGCAACTAATACCAA
TAAATCTCTCGATACCTCTATTTCCCCAATTCCAGAGGATTCTGACTTATTATTCGTTCGGGAAG
GTTGCACCTCTCTCTTGGCTTGGGGGGAATGAATAAAGAAAGGGCAGATAAGGTCCTGAAAGGAG
GTTAAAAATAGACGTTCTAAGGTGTTGTGTCCTCTCCTAAGACTATGAATTTCACGTTGGTCGAG
CGCATAAATTTCCTCTCTTTATTGTATCCTTGTCGCGCGAACACTAAGGCAGTCGTTAGGTGAGG
TAGCTTGGTTACTCTTCGTGAGACGGATATCTCCAGGCAAGTCCA
Right flanking sequence: Indices 390902 -- 391401
ATATTTTACGAAGTGTTTCTTTACCGTAAACCAGTATCTAATTTCGGTAACTAGCCAGGTATCTA
AGTGCATAAAGAGAGAACACAACTCCAAAGATCCTTGGCGAAGTGTAACGTATTGACTCATATGA
TTTCGGTAACTAGGGATAGCATAAGGAGAAGACATAACTCCATAACACTATGGAACTGCTATTTT
TAGCCAGGCGTTAGGCAAATTCGTGACATAAGTCGCAAATAAACTGTAGCAAATAGGCCCTTACA
CGTTACATAAGGCATTGCAAAGTATCCTGGTAGGTTATCCCAACCCTTCTAATTTGAACCCGGTA
AGTAGACGTACTTTCTCCCCTTCACTTTATGGAAAGGCAGAGAGGGGAAATAAGAGGGGAGGGGC
CCCCCCCTTTCTTTTCAATTAGTAGTAGTAGTAATAGTAGTAGGTTTTAAGGTCCCATTATTCCT
ATTATTTTATTCGCGGACACGTTATCTTCGTGTTGCAAGTCCCCC
Found at i:393344 original size:19 final size:19
Alignment explanation
Indices: 393290--393346 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
393280 TTTAGTTTCC
393290 TCCGCC-TTCGCTTGCTCTT
1 TCCGCCTTTC-CTTGCTCTT
* * *
393309 TACCCCCTCT-CTGGCTCTT
1 T-CCGCCTTTCCTTGCTCTT
393328 TCCGCCTTTCCTTGCTCTT
1 TCCGCCTTTCCTTGCTCTT
393347 GCTTTACATT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
18 6 0.21
19 18 0.62
20 4 0.14
21 1 0.03
ACGTcount: A:0.02, C:0.44, G:0.12, T:0.42
Consensus pattern (19 bp):
TCCGCCTTTCCTTGCTCTT
Left flanking sequence: Indices 392790 -- 393289
AAAGACTTTCCTGGGGCAAGATCTATGGAGTTATGTACTTAAAATTGACTTATCTGGTGGGGGGC
CTTATTCTATCCCCCCCCTATTAGTTACCGAAGTGATACAAGTCAATACGTTAAAGAAACACTTC
GTGCTAGGCGGAGCGATCTGGGGACATTGAAGTACCTCCCTGGTCCATCCTGGGTTGACGGGTTC
AAAATAGAATAGAGGGGTTTCTAAGGATCATATCTGTAGGGTTGACTTCGCGTTAGAGTTTCTAA
GGGCCTTACTGGCAGGCTGGACCTTTCATTTAAGATCTTCCCTCCCTCTAATTTAAAGAGAAGTA
AATCCCGGTCGTTATATATGCGCCGTGAACCGCCACTATATATGAGTATTTCGGGCGGGATGAAG
AAGGGGGTTCTCCCATTCGCTGGGAGCTATAAACCTCTTTCGTCAGTAAGCTGGATTAGCACCCG
TGTTTCCTACCGCAAGTAGGCTATTAAGAATGTTCTTTAGTTTCC
Right flanking sequence: Indices 393347 -- 393846
GCTTTACATTTTTGCTTATTTCTAGCCTTCTCGCAGAGCTCAAATTGAAGGCGCTTATTGGGTCT
CTGGGTCGACTGAAGGGAGAGTCCATCCGAGGAGAAGGCATCTCACTTACTCATATTTATTCCCC
TCAATCTCTTTCCTTACTTAGAGATCCCTCCTCTGATTAGCCCAGATGGGGGATTATGGCCCTCC
TTCCTTCCTTTTGTTGAGGGGAGAGGGGCCCCTCAAACCACTATATATAATGCCCAGGGATTGCT
ATCGGGATACTTAAAAACCTCTGTCTATAACAAATACCTCAGGGGGTTAAAGCTCCTTTTCTTAC
ACTCACCTCACATTAACAACTCTCTTTCCTTGCAAAGCATACTTGCGCTTTATTACTGGTGATCA
AATGCATTAGATGCATTCTTCGAAACAATGAACCACATCGCAATTTATTTTCTGCGGCTCCTCCT
TGCAATTTATTTTCTGCACGCGCGCGCGTCATCTATAGATTCCTT
Found at i:400625 original size:28 final size:28
Alignment explanation
Indices: 400586--400640 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
400576 ACTACATAGT
*
400586 CTAATTGGTCGG-ATGAGACTACATATAC
1 CTAATTGGTCGGAAT-AAACTACATATAC
*
400614 CTAATTGTTCGGAATAAACTACATATA
1 CTAATTGGTCGGAATAAACTACATATA
400641 GTAGATTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (28 bp):
CTAATTGGTCGGAATAAACTACATATAC
Left flanking sequence: Indices 400086 -- 400585
ACTTTTAGGACCTCCTAACCGCTCCGCGCCTACCCACCTATAGCCTATAGAAGATCTTACCCTAC
TTACTTATAACCTCTTGCTGAAGCCAGGAAGACGAGGAGAGTAAGTAGGCACTAGGATATATTCA
CCTTTACCCTAATACTTTCCCTTTACCTTATCAATTCTTATTGGTACTACACATCATCTTCTGGT
CCGGTCCAGCCGAGCTTGATGGATCTCTTCATCAATTAGAACCCACTCTATCGCTAGGAATATAT
ATATACCTGGCTACTGCTATGACTGGTGCTTATGGGCTATGTCTGGCGGATCTTCAACTGGTGAA
TCGTATGTAACAAGCTGTAGTAAATCTATCTTGGTGTGAAGTTATTGTTCACATGTGACTCCACA
GTGTCGATCATAGTGCCGTGTGCCGTCCCTGCCGTGTGGCGTGGCGTGCCGGGGCTGGTTCGACG
CGGTCTGTTGTCAACTACTAGATTACCCGGAGAATACTACATAGT
Right flanking sequence: Indices 400641 -- 401140
GTAGATTACCCGGATTAACCTACATATAATTTCTTAGTCGGATTAAACTACATATGAGCTATAGA
TTTTTTGAAACAGATAGATAGATCCCTGGCGGGGTAGATGTGTGGATGCCATATTCGGGATAGAC
GTGCAGCAGACGAAACACAGAACAGGCAGGGCAGGACCGCTATCGCTATAACTTTGGGAGGTCAA
GTGAGGACGGACGCATTAGCTAGGCCTTCTCTGCTTGCTTGCGTGTGTGGGATGGGTGGTCCGGT
ACTTCTTGTGAGGGGGCGTGTGTCCGTTTCTTCCGATTCTTCCAATGAGGAGGGAGCGGGGATGG
TAAATTTGGGATTGAAAGGGTGGCATATCAGTTATAAATTATATGCCTTGAACTGGTAATTGTGA
TAGTTCAAACACTCTGAAAACTGGGTAAATTCACTGCTGAAGGTGGCGTCTAGTGAGTGGCTATC
TTGCCCATTCCTCAGTTGAGCACCCCAGAGAACTGGTAAATTCCC
Found at i:405277 original size:10 final size:10
Alignment explanation
Indices: 405262--405291 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
405252 AGATCTCCCT
405262 TTGGTAGGGA
1 TTGGTAGGGA
405272 TTGGTAGGGA
1 TTGGTAGGGA
*
405282 TTGTTAGGGA
1 TTGGTAGGGA
405292 ATAGATTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (10 bp):
TTGGTAGGGA
Left flanking sequence: Indices 404762 -- 405261
TCGCTGAACTCGTTGATGTTTTCCTAAAAAAAATATAATTAGTAACACTATAGAGTCAGGCAAGA
ATTGAAACACAAATAAGTATAACCAAGTCTCGTAATTATCTATAAGCTGCTAACGCTAGGTTATC
AGTCACACTACCTACCGCTAGCTCTCGTAAGTAAAACTACCGCTAGCTATCCTTGGTGAAATGGT
TAAATGGGGTTCTGGTAGAAGAGAGACTCGTCTTTCCTAGAGTCAGTCTTTTCAACCCTATAGAA
GAGAGAGTCAGTCAGAGGTCAGAGGTCAGAGATATAAGATATAGTAAGTCTTTCCTAAAACGTTC
TAGTCCTTACCAAGCGTTACCGCCGGAACCAATACCAGAGTCTTTCCTCAGGATAGAAGCGTTAC
CGCTAGCGCTAGAATTCCCTACTTCCAATCTTACCCTTACATATTTATGAAAATAAATAGGGTAT
TTTATATACTTTATTTCCTTGAGTCAAGATACTTTAGATCTCCCT
Right flanking sequence: Indices 405292 -- 405791
ATAGATTGGTAGGCCATACTGCTCCTCATGGCCCGAAGGGGACCTCATGGCCCGAAAGAAAATAT
CATACAGCAAGCACACCGGATCTCTGAACCAACTACTAAACCAACTGGATAATATACTGGTTCTT
CGACTGGATCAACGGAGCCCACTGGTACAAGGTATGCTAAATATGGACCTTGAACTGCTCGTCCT
GGACTTGGATCTGCCTTTGCCTCTGCTCCTGTCTTTGCTTCTCACGACTGGCTTTGGTGAAGCTA
CTGCTGATGCTACTAGATATGGATATGGGTCTGGATATGGAACTATATGAAGGTAAGCTATAGGG
TATGGGTCTTGATCTTAAGCTGCTGGACCTTCCAGGTATCCTGGTAAAGATGGTGGTGCTGCTTC
TGGTTCTCGAGATGGAAAGGATGCTTAGCTAGGTGGTCCTTCAACTGGTTCTACGCCTGGGACTG
GATTTGACTCATGAAGAAGGTAAGCATCTCGATCTCGATCTGGAT
Found at i:412646 original size:16 final size:15
Alignment explanation
Indices: 412619--412650 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
412609 CCCTCCTACC
412619 TAAAGTATGGATGGA
1 TAAAGTATGGATGGA
412634 TAAAGTGATGGATGGA
1 TAAAGT-ATGGATGGA
412650 T
1 T
412651 CTATATCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.38, C:0.00, G:0.34, T:0.28
Consensus pattern (15 bp):
TAAAGTATGGATGGA
Left flanking sequence: Indices 412119 -- 412618
GAGTGAAAGCACTGGAAGAGTCAAAGCAGGCTTGGCAGGAATGAATAGAGAGCCGAGAGCCTTGC
AGAGAGAAAGAATGTCTTTGCGCGCAGGAGATCAGTTGGAGACTCAGATCGGGATCGAAAGCCCG
CAGATTCTATTGCAGATTTAGTAGCCCCGGAAGCAAAGGCATCAGTCCCAGTCATTGTTGATCCA
ATTAATCCAGAAGTATCAGCAGATCGAGTTGTTTCACCGGCAAAGGCATGGTTAGGGATTAGGCA
AAGGCATTAGGGATCGCATGGTTCGTTCCTCTCTCTTTGGTCGAGTCACTTAACGTACCTTCAAG
CGCCCTCTTCCCGCCTTTGCTTTGGAGAAGGTCGTGTGTTGTTACTTAACTTCCCTCCTCTCCCC
TCCCCACTGTTTCAAAAGTCAAAAATTCCTTCCTCTCCTACGTCGAGAAAGCGGCTTCGCACCTC
TCCCTCCCTATCGGAGAAGGCGATGGCGGCCCTTTCCCTCCTACC
Right flanking sequence: Indices 412651 -- 413150
CTATATCTCCCTATCCTATCAGACAGAGACCGGTTATAGTGCCAAAAGGTGGTTCTACCGAGAGA
CCTTTCCCGAGAGAGAGTAGCCCGTAGCTTATAAGAAAGAAAGCTACGAGCCAACCGATCAAGCG
AAACGCCCAGTCCGACGAACGAGCGAGAGGAAGTATGCATTCCCGCCCGTTATGACCTGAACTCC
ATTCCCCCAGATATATAAGGAAGGGTGGAGCTGAATGGATGGAAACCTTAAATCCATGTTGCCAT
CGCTACGGGCCTCGGGCGGCTACCTATGGACGAGTGGCGGTAAGAGAGATAGATTCAGACAGAAC
GGGTTTAGGCCCGAAGACGTTTGGTGGAAAGTCAGAACGCCCTTCCTTCCATAGTACACCTACCT
AATAAAACATCAGCCCCATAGTGAACTCGAGCTGCAGGCAGAGGGATAGAAGGGAGGGAAAAAAA
CTAACTCAATGTGCCCTTTCCTTAAGGCAGAATTAGTCCGAACGG
Found at i:414235 original size:23 final size:23
Alignment explanation
Indices: 414202--414252 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
414192 GAAGTCCTTA
*
414202 GTGTGGAGATGACTCGGGCCGGG
1 GTGTGGAGATGACTCGAGCCGGG
*
414225 GTGTGGGGATGACTCGAGCCGGG
1 GTGTGGAGATGACTCGAGCCGGG
414248 GTGTG
1 GTGTG
414253 TTGGTGGGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.12, C:0.16, G:0.53, T:0.20
Consensus pattern (23 bp):
GTGTGGAGATGACTCGAGCCGGG
Left flanking sequence: Indices 413702 -- 414201
CCCGCCCCATTGGGATCCAGCCATAAAACTGAGAAATAAGTCGTTTTTACTTTTATGGTGAGGGT
CATTTACTGCTTAAGGTACAAGATCAGCCTCAGAGCAAGCATCAAGTTACCACTATAGTCTTTTC
TTGCAACCAACCGGACCAGTACAGACTCAAGTAGCAGTTTTTTATGCCAGTGGTAGCCGCTCTCT
TGAAGATATCTCTCAACCGCTACCGCAGCCGGTCACTTCAGGAGTCCCTCTCTAAAGACCTCTAC
CTAGGCCAGTGAGGGTTGTTACGGGATATAACAACTACAAAGGCCTCAAAGCATAGGAAGAAATC
CCAAGGCCTCAAAATCCTTGACCAACGAGGCTGGTAGAGGCAGTAGTTCGTTCGGGTAGAGTCAT
TTGTTCCTTGACTAACCAGGCATTAGTTTAGGCCAGTTGTGCCAGCAGTAGCTGCTCTCTGGAAG
ACCTCTCTGACCCGGGTTCGATAGGTTGGGTTGGAGAAGTCCTTA
Right flanking sequence: Indices 414253 -- 414752
TTGGTGGGTCTGGAACGAAGAAGGAATCTATCCAGTTTATTAAAGCTCAAGGTAAGGTTTCTCCT
TCCTAATTGTTGCCGCTCTCGGGTTGCCGCTCTCTAGGCGAGTGGTTGCGGCTCTCTGGTGTCCG
CTCTCAGGTTGCTGCTCTCAGGAAGAGCTCTCTATCGTGGGTTGTAAGCTTGACATGGGTTCGAG
AGGTTGGGTTGGAGTGTAATCCATGAATGAATCTATCCGGTCAAGCAGTGGTTTAGGCCAGTTAA
GGTTTAGGCCAGTAGTTGCCGCTAACTTCTTTAAGTGCAAGTGAGGAGCAGTGGTTCGTTCGGGT
AGAGCTGTAGAGGGCTGGAGAAGGAAGGGTAGGGCTTTAGGCTAGTGAGAAAGAAGGTGCGGGCA
TTAGTTAGACTGAAGGGTAGAGGCGACTGACTGACCGAACGACTGATTGAAGGAACTGACTGAAA
CCTACTGATGGATGGCTGCCTGAGACCGACCCCGACCGAAGCATC
Found at i:417337 original size:21 final size:20
Alignment explanation
Indices: 417312--417352 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
417302 TACTCTTATG
417312 CGACAACTCCATCTTTCTGCA
1 CGACAACTCC-TCTTTCTGCA
* *
417333 CGACAGCTTCTCTTTCTGCA
1 CGACAACTCCTCTTTCTGCA
417353 TTGTGGTGCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.20, C:0.37, G:0.12, T:0.32
Consensus pattern (20 bp):
CGACAACTCCTCTTTCTGCA
Left flanking sequence: Indices 416812 -- 417311
ATGTAAATAATCCCCGTAGGGATCCTGGTAGTTTACGTAATGACATCGTACATGGTTCGGTAGTA
GCCCTCAAACATGGTATCAATACCAACCTGTGCTGCCTTGTCTGCTGAGGACTTAATACTTGGCA
GCAAAAAATTTTTCCTGCGGATCCCACTGCGGTAGTTGAACACCCTCTGGCTCTGCCCACTGCGA
GAATGCAATAAGTAGCAAGAAACTCCCGAAACAGAAGTCCTGGTTTCTGTCCTGCATGTCTAGTA
CATTCTGCAGTACCTCATTGGTGAGATACATCACCTAGTTCAATTTTATGCCATTTGCGCATACG
TCGACCACATGGACAGCCTGTTTTGAACACTCACCCTTCCGGTAGGTCCACAACACCCTTGTATA
CATCAACTGCGCTGCCATGCTAACTAGCAAATAGTTAATAGAGGCTGTATCATAGCCCCGATTCT
TGGGTTTCGTGCCATATTTAAGGCACGGGTCCATTTACTCTTATG
Right flanking sequence: Indices 417353 -- 417852
TTGTGGTGCGAACCACGAACGCATCAGTGGCATCCTGCCCATCTTGTGATAACCCCATAATGGCA
TGAATCATCTCGGCATTAATGGGGATTTTCCTGTCTAGCCAAATCCCTCTAGAATGAGTCTGCAC
CAGCAGTAGCCTTACACACTTCCTGACCACCGAAGAGTTTCCAAAACAGGGAACATGTAGCTGGC
TCGTAATGCCAGATTTTAACAAGGGCTTGAACGACTTCAGAATCCTGGTCTTGTCCCCTTTCCAT
TCTGAGTATTGGTCTGGTGAGAACTCAGGTAAGACCGCATAGTTGTGGATGTCATAATCCACCAG
CTGCACTTGCTCGACATAGCCTTTCAAGTGCTCATCCTTATGTACAAGCACCCACGCATCAAGTC
TCTCTTCTGGGCAAACTGGGTTCTGCACCTCCAGGATGGGGGCCTTATCCCCTCTCGGCTTATTC
TTCTGGGTCTTGCTACCCACTGTGCCCTTGCCTGCCGCTGGTACT
Found at i:424438 original size:11 final size:11
Alignment explanation
Indices: 424418--424451 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
424408 TCCTTATTTC
424418 CTTGGCCTTGG
1 CTTGGCCTTGG
*
424429 CTTGGACTTGG
1 CTTGGCCTTGG
424440 CTTGGCCTTGG
1 CTTGGCCTTGG
424451 C
1 C
424452 AGAGGCATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.03, C:0.26, G:0.35, T:0.35
Consensus pattern (11 bp):
CTTGGCCTTGG
Left flanking sequence: Indices 423918 -- 424417
CAACCCGAACAGGAAGCCCCTGTGTGGTGTGGGGGCGTGTCAACGAACGCGAACACGACCCACCG
ACATAGAAGTAGCGAGCAAGCCTTCTAGTAGCAAAATTTCCCCGAGGCTGCCACCACGGGATATG
ATGCCCTAATCACCTACCTGCAGGATTGTCAAGGAAACGAAAGTGCCACTTCTCAGACAAGGACC
CTTCGCTACGCTCAGGTAAGGTAGGTATACTTTTATATCTTTCCGAACCAGGTTATAATAAGGCT
CTTTGAGGGGAATAAATATGAGTAAGGTGCATAATTGGTGTGTGTAGGTTAGCATAGCGAAGGTT
ACTGTCACGAGGCCCTTTATCTATCTCTGGCCCCTCAAAGAGCGCGCTTCTTTCCATGGTGTTGT
GTGGGGCTCTATTATATATATATATATAGTTACATAAAACTAGTCGTCGCCTTATTGGGGGGAAG
GGGGGCTCAGCTCAGCTCAGTCAGGCGATCCCTTATCCTTATTTC
Right flanking sequence: Indices 424452 -- 424951
AGAGGCATTGAAAGATTTCTCTTACTGTGTCCTCTCCTTATCATATCCTTCTAGCGCGAACACTA
AGGAAGGCAGTCGTTAGAGGTGAGCGGGGTTATTAAGACAGATAGCTCCAGACAAGTCCAGGGAG
GTCCTTTAATGGCCCCAGGGAAGTCTTTTCATGGCCCCAATTCTGCCTTTCGGATAATGCGGAGC
CGACCCTCGACCGACGCAGGAGGGAGAGAGCATTTCTGCACTCGCTCGACCCGCCCGCATATAAC
CTGGGCATTTACTCGACCTGCTCTCCCTTTCTCGACGATCTTATTGTATGCGAACTAACTCCTGT
TCGGTTATGACTGACTATCTAATATATAATAAAGAGACCAATTCATGTGGGATGTCGCTCACTGT
ATCTTACTTTACTAGGTCGAGGGATAGGGCATTGACTCGCTCGACGTCAGGAGGGAGAGGCACTT
GTTCTTGTTGTTATCCCTCTCCGTGCGTGAGGAGGGAGAGGCGAA
Found at i:424602 original size:22 final size:22
Alignment explanation
Indices: 424574--424620 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
424564 CCAGACAAGT
*
424574 CCAGGGAGGTCCTTTAATGGCC
1 CCAGGGAAGTCCTTTAATGGCC
* *
424596 CCAGGGAAGTCTTTTCATGGCC
1 CCAGGGAAGTCCTTTAATGGCC
424618 CCA
1 CCA
424621 ATTCTGCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (22 bp):
CCAGGGAAGTCCTTTAATGGCC
Left flanking sequence: Indices 424074 -- 424573
TGTCAAGGAAACGAAAGTGCCACTTCTCAGACAAGGACCCTTCGCTACGCTCAGGTAAGGTAGGT
ATACTTTTATATCTTTCCGAACCAGGTTATAATAAGGCTCTTTGAGGGGAATAAATATGAGTAAG
GTGCATAATTGGTGTGTGTAGGTTAGCATAGCGAAGGTTACTGTCACGAGGCCCTTTATCTATCT
CTGGCCCCTCAAAGAGCGCGCTTCTTTCCATGGTGTTGTGTGGGGCTCTATTATATATATATATA
TAGTTACATAAAACTAGTCGTCGCCTTATTGGGGGGAAGGGGGGCTCAGCTCAGCTCAGTCAGGC
GATCCCTTATCCTTATTTCCTTGGCCTTGGCTTGGACTTGGCTTGGCCTTGGCAGAGGCATTGAA
AGATTTCTCTTACTGTGTCCTCTCCTTATCATATCCTTCTAGCGCGAACACTAAGGAAGGCAGTC
GTTAGAGGTGAGCGGGGTTATTAAGACAGATAGCTCCAGACAAGT
Right flanking sequence: Indices 424621 -- 425120
ATTCTGCCTTTCGGATAATGCGGAGCCGACCCTCGACCGACGCAGGAGGGAGAGAGCATTTCTGC
ACTCGCTCGACCCGCCCGCATATAACCTGGGCATTTACTCGACCTGCTCTCCCTTTCTCGACGAT
CTTATTGTATGCGAACTAACTCCTGTTCGGTTATGACTGACTATCTAATATATAATAAAGAGACC
AATTCATGTGGGATGTCGCTCACTGTATCTTACTTTACTAGGTCGAGGGATAGGGCATTGACTCG
CTCGACGTCAGGAGGGAGAGGCACTTGTTCTTGTTGTTATCCCTCTCCGTGCGTGAGGAGGGAGA
GGCGAAAGAAATTGGTAGAAGTTATTAGGTGTGTAATATGCCAGATATTACGTAATCATCACCTT
ATGTACCTTTCGGTAGCGTTAAACAAGGCTGTCCCCTCTCCCGACGGGAGGGAGAGGCAGGCGCT
TTGTTCGGTGAATTTGTTGAAAAGAGTAAGTGGATGGGAGGTGTC
Found at i:425409 original size:21 final size:23
Alignment explanation
Indices: 425383--425439 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
425373 ACTCCACGAA
*
425383 TGGGCTTCTACCTAATG-T-ATG
1 TGGGCTTCTACCTAAGGTTCATG
**
425404 TGGGCTTCTACCTGGGGTTCATG
1 TGGGCTTCTACCTAAGGTTCATG
425427 TGGGCTTCTACCT
1 TGGGCTTCTACCT
425440 GGGATTGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 14 0.45
22 1 0.03
23 16 0.52
ACGTcount: A:0.12, C:0.23, G:0.28, T:0.37
Consensus pattern (23 bp):
TGGGCTTCTACCTAAGGTTCATG
Left flanking sequence: Indices 424883 -- 425382
CGACGTCAGGAGGGAGAGGCACTTGTTCTTGTTGTTATCCCTCTCCGTGCGTGAGGAGGGAGAGG
CGAAAGAAATTGGTAGAAGTTATTAGGTGTGTAATATGCCAGATATTACGTAATCATCACCTTAT
GTACCTTTCGGTAGCGTTAAACAAGGCTGTCCCCTCTCCCGACGGGAGGGAGAGGCAGGCGCTTT
GTTCGGTGAATTTGTTGAAAAGAGTAAGTGGATGGGAGGTGTCCGCTATGTCCTTCGGTGAAGAA
TCCCGTTCTGTGGGTCCTTCGGTCGGTGAAAAAATAGAGAGTCTGTTAGGAGACAATAGGTTAAG
GTGGCGGATCGATTCTTCGTTCGGTTCAAGGTTGCATTCTAGTGCACCCGATGCTGTTGCGGTGA
AAAGAAAAGAGTAGTATTCCGGCGGTTCTGCTATTCCTTGTTGGGGAGGAGTGCCCCGGTGCGGT
GGAAGGGCAGAGTCTGTTTTCCGTATATTGTTGTGACTCCACGAA
Right flanking sequence: Indices 425440 -- 425939
GGGATTGAGGGTCTTACTGAATGCTTCTACTGAGTAGGCGTCTCCCTCGAGTAGATGATTGGGTT
CAAGGGGGTCTCGACTGGTGTGGGCTTCTACTATGGGGGGGACTGGGTTGGTTGTGGAATTGAAT
TGGCTGTGGATCAATCCTCTGGTCCTGTTTCTCAGGGTTGTTGGCTTTGGTCTCGTTCCAACTAG
TGTCTAAAAGCTATCCCTATCGGTAAGGCAGGCTCGGTACCAACAAGAGCAAAGGCCCTCGACCT
AACCTATCAGGCGCTCTCCCTCTCCCTATCTACTGTATCGATCGGTAAGACTCGACCGATAGGGA
GCATGCTCCACTAGTCCGCTATTTTGACTTGACTCCAAACCCCAATGCACTCGTTGTACATAAGA
TAGAGGGCCTTTGGGCACCGGAGTCAGCGAGGGGGAGGGAGTGAGCGACGGCCAACTCATCTCGA
CCGACGTAAGGAACAGCGTCAGTCAGATCTATCGAGATAACATTA
Found at i:430433 original size:33 final size:33
Alignment explanation
Indices: 430391--430468 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
430381 GCATGAGTGC
*
430391 TGTTCTTATTCCTGGGATATCCCTGCAACTGGA
1 TGTTCTTATTCCTGCGATATCCCTGCAACTGGA
* * *
430424 TGTTCTTATTCCTGCGATATCTCTTCGACTGGA
1 TGTTCTTATTCCTGCGATATCCCTGCAACTGGA
*
430457 TGTTCTCATTCC
1 TGTTCTTATTCC
430469 CACATGATGG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.41
Consensus pattern (33 bp):
TGTTCTTATTCCTGCGATATCCCTGCAACTGGA
Left flanking sequence: Indices 429891 -- 430390
GATAGGTGGTTCGCAGAGAGAAATAAAATAGGGAGAATCTCTTCACCCTAAACCTACCACCAGCC
CTGCAACTGTTATCATTCCCGTGATAGCCCTGCAACCGGCTATACTTACTCCTTCGATATCGCCC
GGATATACGTACTCCACGGATAGCCCTGCAACTGGATGCCCTTATTCCTGCTCTATTGGCCTGCG
AACTTATCCCTCCCAACCGAAAAGGGAAGTACTCAAGGTTCAGTCTAATCAGTCAATCTATTCAG
GCAGGCAAGGAATGCTCGGTGATATTCTGATTCTAACTGCTTCTTATTCCATGGATAACTAGCTA
TTGGAGATACTATTGCTTCGGCATGACACGATGTACGAGGGCAGCTTGGTCCGAGAACTAGTTCC
TTTTCCCCATTGATTGAGACGGGGTACGAGGACATCCTTTTCCCGAGAACAATATCCTCTGGCCC
AATAATTACTATTAGTTTTTTAATGGGTGTAAGTAGCATGAGTGC
Right flanking sequence: Indices 430469 -- 430968
CACATGATGGCCATTCACCCGTGAACTTCTTCCCGTGATAGCTATTCTCACTCGTGAAGTACTTA
TTCCTGCCATGCACCCGTGGATGTCCTTATTCTGGCTAATGCACCCCTGTAAGTGTTCTTATCCC
CCTTTCCCCTCCGAAGGGAGGCACTCAAGGTTCAGTCTAATGTAAATCTTTAGGCAGTTGGAGTG
ATACCGGGTTTAAGAGATACTTATTCCCAGTTAAGGAACGCCTAAGATCTTATTATTCTTAGTTA
AGTGCTTTTTATGCTGCGGATAACGATGGGTACGAGGACGCCTTATTCCCCATTAAACTCTGTAC
GGGACGAGGTTCAGCTCCGCACAGTATCTATTCCCGGTGATATCATTCCAAGGAAGTGACAGCAC
GAGATGAGGTGCGGTTCATTCAGCCCAACGACAACCCGCCAGCGGAATACATCTAGCCCATGAAC
TGGCACGAGTCCCGGTCCACAGCTTCTCAGCCTAAAAACGAAAGC
Found at i:431184 original size:13 final size:13
Alignment explanation
Indices: 431166--431191 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
431156 AATTATGGGA
431166 CTGGATTCATTAT
1 CTGGATTCATTAT
431179 CTGGATTCATTAT
1 CTGGATTCATTAT
431192 AAAGATGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
CTGGATTCATTAT
Left flanking sequence: Indices 430666 -- 431165
ACCGGGTTTAAGAGATACTTATTCCCAGTTAAGGAACGCCTAAGATCTTATTATTCTTAGTTAAG
TGCTTTTTATGCTGCGGATAACGATGGGTACGAGGACGCCTTATTCCCCATTAAACTCTGTACGG
GACGAGGTTCAGCTCCGCACAGTATCTATTCCCGGTGATATCATTCCAAGGAAGTGACAGCACGA
GATGAGGTGCGGTTCATTCAGCCCAACGACAACCCGCCAGCGGAATACATCTAGCCCATGAACTG
GCACGAGTCCCGGTCCACAGCTTCTCAGCCTAAAAACGAAAGCGTAAGTAAAACTAATTATGTTG
TACAGGTAACTCCGAGATGCAGCCCTCAACATTCATTTATTAATGAAGCATTAATAAACTCATTT
TGACCTCCCACCCAACCCACCGCACACACTCAGATAGTCCCTCCTTGTGCACTTTGTGACCTTCC
TGGCCACGCCACCAATAAGTGCCCCGAGCTCCCAGAATTATGGGA
Right flanking sequence: Indices 431192 -- 431691
AAAGATGAAGTCATGAGTGACGCTTCACCCATGGTCGAACTCAATATTCCATCCTTCGCCAATAA
GCGTAACAAATCCCTACGGATGAGTCACCCATGTGGCTTGTGCGATATATTTGGTCATTATTCAC
ACCATTGTCCGGAGCTTCCAGCATCCCTCCCAGTTTTAGAGCCAGCATATCCAAATCTATAGCCA
TAAGCAGTTTACCCATCATTAGCTTGTGTTCCTTCCAGGGGGGACCCCTTGAGCCCAATTAAGGC
TTTGAACACCTATGTTCCTTATCTAAAGAGACTTGCTGTGGCCAGGACATATAAATGGGGTTTAC
GAGTGAGTGATAAAGCGCTTCAATGGGAATTTTATGCCACTTTCACCCTTAGTCGAGTCAGTCCA
GAAGAGCTGGTTCCTGGCTTTCCAAGAGTGAAGGGTCGAGCTGGCTTTCCTCCTGCCAAACGGTT
CCTGGTCTTCCTCCTGCCTTCGAGAACGGTAACCAAGCGACTCAG
Found at i:436539 original size:30 final size:30
Alignment explanation
Indices: 436498--436566 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
436488 CGAAACGAAC
*
436498 AAGAGAGGGCAGGCACTCTT-GATAAAAGAA
1 AAGATAGGGCAGGCACTCTTGGA-AAAAGAA
*
436528 AAGATAGGGCAGGCACTCTTGGAAAAAGAG
1 AAGATAGGGCAGGCACTCTTGGAAAAAGAA
*
436558 AAGGTAGGG
1 AAGATAGGG
436567 TTTTCTTCCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 33 0.94
31 2 0.06
ACGTcount: A:0.41, C:0.12, G:0.35, T:0.13
Consensus pattern (30 bp):
AAGATAGGGCAGGCACTCTTGGAAAAAGAA
Left flanking sequence: Indices 435998 -- 436497
CTTCATTGGAAAGTCTCTGGTTTCATTCCCATCCACTCACTAACCCGAATTCTTGCGGCGAATCA
CCGCTTGCTTGGAGGCGCTCTCCCTCTTAAGATGAAAGATTTCAGAGCCAACATCGTGAAACCTA
TGAATCGATGCTTTACTAAAATATGACTAAATAAATGTTTTATATACGTATTAACTTAATGATAG
GGCTCTTAAGTTTCGTATAGGTCCTTTTTACATCGACCCTAAGATGGGAGATAGCTTAAATGCAC
TCTGAAATAGGGAGAGGGGAGATAGAGTGCACTCGACCTTTAAAACGAGGGAGAGAGCATTTATG
CTGTCGATAGCTTTTCATCTTTCATTGGGAGAGGGCTTAAATGCACTCGACCTAGTAGATAGAGA
GAGAGCTCGACTTCTAAAATAGGGAGAGGATAGTTCGTTATTACATACGTAATAAGACTTCAAAA
ATTTGGAATGGGAAGAAGAACTAACAGGAACGTGACGAAACGAAC
Right flanking sequence: Indices 436567 -- 437066
TTTTCTTCCTAACTTTCATTATTTTATTAAGAGTGCATTTAAGCTATCTCCCTATTCATTAAGTA
AGAGACAGAAATTAAGGTTGAGCATTGAAAATAGGTCGCATAAATGAGATTTATTCCTATTAAAA
TATAAACGTTTTATTAATTGCGCATAAATGAGTAGTGGTGAGATAGATTGATTCCTCTTAAGATT
GAGTAAACGCGATTTTAAAGCAATGAAAGATCTCGTGAGCCTGTGAAGCTAAACCTACGTAAGGG
CGGGCACTAAGGTATACATTGAAGGCCCCCTCGAAGCCGCCTTAAATTAATGAATATGATTACTT
GTATGAGAATGATGAGATGGAAATTCTAGATATTTCGTGGTGGAATGGAGGGCGACCCTGCATTG
GCCGTACGGAAGATGCTTCCTTATGACCGAGTAGGGTTGCTCGGGAAAGGGGGGACGCGATATAA
AGCAACGGGAACACGAAGATGAGAAGGTCCTGAAGAAGTAGGCCC
Found at i:443972 original size:13 final size:13
Alignment explanation
Indices: 443954--443986 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
443944 GATTGTCAGG
443954 TCTAGCCTCACGT
1 TCTAGCCTCACGT
*
443967 TCTAGCGTCACGT
1 TCTAGCCTCACGT
443980 TCTAGCC
1 TCTAGCC
443987 AGGCATCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.15, C:0.36, G:0.18, T:0.30
Consensus pattern (13 bp):
TCTAGCCTCACGT
Left flanking sequence: Indices 443454 -- 443953
GGGGCCTGGGGGATCTCCTGTCCTCCCACCCTAGCCTAACTTCGTTGAACTCGAGAAAGTAGTTG
ATGGAGCTATATCAAGTAGTTAGATTGCCTAACCTATTATCGGGGGGAATGAAACCCGGATAGCC
TAGAGGAAGTTAACGTTATCCGGGGGTGGGGGATGGAGCCTAACGAGGAGCTAGCTACCGGGGGT
GAAGGCTGGAGAGTTTAGTGAAGGAGCATCCGACCATCCAAAGTTACTTTCATCCGAGGGCAAGG
AGAACTAAATCAATATTTCCCTCCGCGGCATATGGGGAAACTAAATCTATTTCATTCCGTGATTT
TATGGAGGAACTAACCCGTTCGTTGACAACATGGGGGAACTCATATCAATCTATATCATTTCGTG
TTTCGATGACAATGGGTGGGATGTCAAGCCAGGTCAATGCGTATGGTGGATTCGTTGGTCTTGTT
TCGCAAAGCATAATCGCCGGGTTGGTCTCGCCTCGGATTGTCAGG
Right flanking sequence: Indices 443987 -- 444486
AGGCATCAAGCAATCCGTCTGTCCATCCGTCCGTCGGTGTCAAGTTCTTCATCGGAAGTTCACAA
GAAGAGGTCGACGGGTATCAATCGAGATCAACGGGTATCAAGCGAGAGAGGTCAGGCAGGTAGCA
AGATAGAAGATCTCAGGGAAAGAGAGAAGAGACGGGCAGCAATAGAAAGACGGAATCAGTTCGAA
GGGAGCAAGATAGAGATCAGCAGGCAGTCGGGCCGAAGGATCGGTGGTTGGGTTAGTCGAGCGAA
GCAGAATTGTTGAGTCGTCTATCCACACGTTCTAGCGTCACGGTCTAGCCTCCTCGCAAGCAAGC
CATCCCGTTTCTGTTGGACCAGTTCCGGTGCTCCTTCCTTTCCCTTCCGTCCGATCACCTCACCT
CCTCCTTCCGTCCCATCAATCCGGTACTTCAAAGAAAAGGGTTCATAGCAGTCCCGACTCACTAC
ACTAAGTGCATTAATTCCTCAAGAGGTCTAGGGATAACCGGTCTA
Found at i:446108 original size:17 final size:17
Alignment explanation
Indices: 446086--446119 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
446076 GACTTTTAAA
*
446086 TCAGTCCGCCCTGAGTG
1 TCAGTCAGCCCTGAGTG
*
446103 TCAGTCAGTCCTGAGTG
1 TCAGTCAGCCCTGAGTG
446120 ATTGATCGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.29, G:0.29, T:0.26
Consensus pattern (17 bp):
TCAGTCAGCCCTGAGTG
Left flanking sequence: Indices 445586 -- 446085
GAGACATAACCGGACTTTCTTTCTAACGCCTTACCTTAGCGTAATTACATATATAATGAATGACT
GGAAGAATTGCTCGATTTTCTACTTAAAGCTCTTCTTTTGGTCGAGCTTTAAGTAGAAAATTGAG
GAAGAACAAAGAAAGAAATAAAGTCAATTCCTCTCCCATAACGGTCGAGCCTGCTTGCGCATCCT
CGCTCTCTCTTTGGTCGAGCGAGTCACTTAACGTCCCTCACCCTCTGCGGGACGAGCCTGCTTTA
CGCACCGATCAATTCTTTTCTAAATTCTTCGATTGCGTAATTACGTAGATAATGAATGACCGGAA
GATCGGGCGTCAGTCGAAGGAGAATGAAGTGTCTTGTTTAGTGAAAACGCCGCCCAAAGTACTTC
TACGAGGTAGGTCACCGGCGTCAGTATACTAGAAAGGCTACAGAGTTTCACCCTTCGACTCACAC
CGAATCTAGTGTTATGACATAAGAATGAAGAAATGGACTTTTAAA
Right flanking sequence: Indices 446120 -- 446619
ATTGATCGATTGAGGGGAATTTTGTGCGGTGTGAAAGGTTTAATGCCTACTGTATCGGAAAGAAT
GCATCGGATGGATGCCCGGGCATTGAGAGGGAAGGACGCTTCCAAAGAAGCGCTCTTTGAGGGGA
ATAAATCAGATAGAAGAGATATAGAAGCGCGCTCAAGACCTTTCAGGACCTTCGTTATCGTTAGA
AGGGCAGGACCGACCTTACTTACCGCCTTTCAGTACTTTCTATCTTTTAAAGGAGGTGGGGGACG
GGGAACGCAAGTTCTATTGGATGGAGGATTGGGAGGTGGAAGAAAAATGGCGAGGTGGGGGGGGC
CTCGAATACTAGGGGTGGGAGTGGGATTTCGGAGTATCTGTGCGAGCCGTATGCGGTGAGAGTCG
CACGTACGGTTACGGGGGGGGGTTAACGTCTATACGTATAGTGTGGTGGCCTACCCCATTTGTTC
CATGATCTATGGGTCTACTGGAGTTACCCACTTCGATCAATTAGC
Found at i:452267 original size:21 final size:21
Alignment explanation
Indices: 452243--452300 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
452233 TTACTTACTG
452243 GCTTTCAATACGTTACACCTA
1 GCTTTCAATACGTTACACCTA
*
452264 GCTTTCAATACGTTACGCCTA
1 GCTTTCAATACGTTACACCTA
* *
452285 GCCTGCTAATACGTTA
1 GCTTTC-AATACGTTA
452301 GTTATACCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 24 0.73
22 9 0.27
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.33
Consensus pattern (21 bp):
GCTTTCAATACGTTACACCTA
Left flanking sequence: Indices 451743 -- 452242
AGCCGGGAAGGGGCCTGATTTATAAGTGCCTACTGCTACACTTGGCTCTACACATTTACAGAGCT
AACCCCTGTCCATCGGATGTGTCCGGCAGGGTTCAGGGGGGGGCGGGCTTAAATCCTCCTTCCTT
GTGAGTGAATCTCTAGATGCATGGCTTTTTGAACGGACAAGGGGGGCCAGAGCGAAGCCTCTGGA
ATACAAGATCCTTACAGCTGCCATCAAGGCCTGAGTTACCTCTTAGGTATGGAGCAGTGTTCATT
CGTTCATGTGTACTCCCCGACAGAGTCGTTAGCCTCGTTCGTAGATAATTTGGATGCCCCGCCTG
TCATGGAGAGCGGAGCATGCATGGAAGAGAGGGAGCCTCCCTCTATGAATGAATCGGGACCGGGT
GGCCTCTAGCCTTTATTCTATATAATAACCATCCTTTCCATCTCAATCATGACCATATAGATAGC
GAGCGGCGCCCCGGCCCGACTTACACTTACGTGACTTACTTACTG
Right flanking sequence: Indices 452301 -- 452800
GTTATACCTAGCTTTCAATATGCTACGCCTTTCAACACGTTACGCCTTACCTTACCTCATATTTA
TTCCCTCCCCTCAAATAAAAGAGTTAGAGTTCGGGAAAATAGAAAACATACCTTACCTGAGCTAT
GCGTAAGTGACCTGAGCTATGCGTAAGTGACCTGAGCTATGCGATCGATTTAAGCTTAACGCCCC
CTATATATATATCCATTACAATGTTTTATCAGTGCCTTACGAACCATCAGTGCATGAATGGATGG
ATGTTTGGTCCCCTTTCCTGCAGCATCAATAGGTATCCTTTCCTGCGGCATCAATTGGTTTCCGA
TGCCATTCCTTACCTTCCCTTCCCTCTCTTTCTACAAGCTCCAACGTCATTCTGCCCACCCTCCC
GGTTAGGGGATAAGAAGGCAATCTTCTAGTGTATTCTTTAAGGAAGGAATGCTTGGGACTCTCGA
ATAGGCAAGGATGCATCCCCTCTAGTTGCTGGGTATCGATATCGA
Found at i:452280 original size:26 final size:25
Alignment explanation
Indices: 452251--452320 Score: 60
Period size: 26 Copynumber: 2.9 Consensus size: 25
452241 TGGCTTTCAA
452251 TACGTTACACCTAGCTTTCAATACGT
1 TACGTTA-ACCTAGCTTTCAATACGT
* *
452277 TACG----CCTAGCCTGCTAATACGT
1 TACGTTAACCTAGCTTTC-AATACGT
452299 TA-GTTATACCTAGCTTTCAATA
1 TACGTTA-ACCTAGCTTTCAATA
452321 TGCTACGCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 13
0.67 0.08 0.25
Matches are distributed among these distances:
21 9 0.26
22 9 0.26
25 4 0.12
26 12 0.35
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (25 bp):
TACGTTAACCTAGCTTTCAATACGT
Left flanking sequence: Indices 451751 -- 452250
AGGGGCCTGATTTATAAGTGCCTACTGCTACACTTGGCTCTACACATTTACAGAGCTAACCCCTG
TCCATCGGATGTGTCCGGCAGGGTTCAGGGGGGGGCGGGCTTAAATCCTCCTTCCTTGTGAGTGA
ATCTCTAGATGCATGGCTTTTTGAACGGACAAGGGGGGCCAGAGCGAAGCCTCTGGAATACAAGA
TCCTTACAGCTGCCATCAAGGCCTGAGTTACCTCTTAGGTATGGAGCAGTGTTCATTCGTTCATG
TGTACTCCCCGACAGAGTCGTTAGCCTCGTTCGTAGATAATTTGGATGCCCCGCCTGTCATGGAG
AGCGGAGCATGCATGGAAGAGAGGGAGCCTCCCTCTATGAATGAATCGGGACCGGGTGGCCTCTA
GCCTTTATTCTATATAATAACCATCCTTTCCATCTCAATCATGACCATATAGATAGCGAGCGGCG
CCCCGGCCCGACTTACACTTACGTGACTTACTTACTGGCTTTCAA
Right flanking sequence: Indices 452321 -- 452820
TGCTACGCCTTTCAACACGTTACGCCTTACCTTACCTCATATTTATTCCCTCCCCTCAAATAAAA
GAGTTAGAGTTCGGGAAAATAGAAAACATACCTTACCTGAGCTATGCGTAAGTGACCTGAGCTAT
GCGTAAGTGACCTGAGCTATGCGATCGATTTAAGCTTAACGCCCCCTATATATATATCCATTACA
ATGTTTTATCAGTGCCTTACGAACCATCAGTGCATGAATGGATGGATGTTTGGTCCCCTTTCCTG
CAGCATCAATAGGTATCCTTTCCTGCGGCATCAATTGGTTTCCGATGCCATTCCTTACCTTCCCT
TCCCTCTCTTTCTACAAGCTCCAACGTCATTCTGCCCACCCTCCCGGTTAGGGGATAAGAAGGCA
ATCTTCTAGTGTATTCTTTAAGGAAGGAATGCTTGGGACTCTCGAATAGGCAAGGATGCATCCCC
TCTAGTTGCTGGGTATCGATATCGATCGTAAACCGGGTGGCATGC
Found at i:452445 original size:20 final size:20
Alignment explanation
Indices: 452420--452473 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
452410 AACATACCTT
452420 ACCTGAGCTATGCGTAAGTG
1 ACCTGAGCTATGCGTAAGTG
452440 ACCTGAGCTATGCGTAAGTG
1 ACCTGAGCTATGCGTAAGTG
452460 ACCTGAGCTATGCG
1 ACCTGAGCTATGCG
452474 ATCGATTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (20 bp):
ACCTGAGCTATGCGTAAGTG
Left flanking sequence: Indices 451920 -- 452419
CAGAGCGAAGCCTCTGGAATACAAGATCCTTACAGCTGCCATCAAGGCCTGAGTTACCTCTTAGG
TATGGAGCAGTGTTCATTCGTTCATGTGTACTCCCCGACAGAGTCGTTAGCCTCGTTCGTAGATA
ATTTGGATGCCCCGCCTGTCATGGAGAGCGGAGCATGCATGGAAGAGAGGGAGCCTCCCTCTATG
AATGAATCGGGACCGGGTGGCCTCTAGCCTTTATTCTATATAATAACCATCCTTTCCATCTCAAT
CATGACCATATAGATAGCGAGCGGCGCCCCGGCCCGACTTACACTTACGTGACTTACTTACTGGC
TTTCAATACGTTACACCTAGCTTTCAATACGTTACGCCTAGCCTGCTAATACGTTAGTTATACCT
AGCTTTCAATATGCTACGCCTTTCAACACGTTACGCCTTACCTTACCTCATATTTATTCCCTCCC
CTCAAATAAAAGAGTTAGAGTTCGGGAAAATAGAAAACATACCTT
Right flanking sequence: Indices 452474 -- 452973
ATCGATTTAAGCTTAACGCCCCCTATATATATATCCATTACAATGTTTTATCAGTGCCTTACGAA
CCATCAGTGCATGAATGGATGGATGTTTGGTCCCCTTTCCTGCAGCATCAATAGGTATCCTTTCC
TGCGGCATCAATTGGTTTCCGATGCCATTCCTTACCTTCCCTTCCCTCTCTTTCTACAAGCTCCA
ACGTCATTCTGCCCACCCTCCCGGTTAGGGGATAAGAAGGCAATCTTCTAGTGTATTCTTTAAGG
AAGGAATGCTTGGGACTCTCGAATAGGCAAGGATGCATCCCCTCTAGTTGCTGGGTATCGATATC
GATCGTAAACCGGGTGGCATGCTAGGAAAGAAGCTATGTCTGCTTATAAGGTTAAGATTAATTAC
GATTTGAAACCGCTCTTATAAAAGTTATTAAAAGCTACCGGGTGCGTCTGGTTTGCTTAGTAAAA
TGCTCCATGTCCGTCGTGTGTCTGGGTTTATTCCTTATATATGTT
Found at i:457853 original size:21 final size:21
Alignment explanation
Indices: 457827--457870 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
457817 CCTATAACCC
*
457827 TTCCCGCCTTTGATACATCAA
1 TTCCCGCCCTTGATACATCAA
457848 TTCCCGCCCTTGATACATCAA
1 TTCCCGCCCTTGATACATCAA
457869 TT
1 TT
457871 GCAATAACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.34, G:0.09, T:0.34
Consensus pattern (21 bp):
TTCCCGCCCTTGATACATCAA
Left flanking sequence: Indices 457327 -- 457826
TGAACGGGCACTCTCCTTTAAGTCCCCCAGTTTCAAGCTTGGCTCTAAAAGAAAGGATCAGGGGC
GGCCACGCCCATTGATTGACAATCACTACCGATCCTATCCGGGAAAGGCAGTATGGAAGGTGTGG
TCCCTCTTTTCTCTTGCCAGGCGGGGAGTTAGGGAAAAAGACATAGTGTAAAATTATATATTGGT
TGGGGGGTGAGCTATGTCCCAGTGGGGTTTTTGGGGGCACTAAACTAAACGAACGGAACCGAGGA
GGAGTGAGCATGGATTGCTATTGCTAGAGGGAGGGACGGATGGAAGATTAGTTACAGCCTTTCCT
TTGAAGGTCTTAAATAACTATAAGAGAACCTGGAAGAGCGTGGTCTTAAATGTTCTATGCCACAT
AAGTGTAAGATAACCACTTAAAGAAGATATATTGATTATTCCCGCTAATGAATAGAATAGCGAAT
AGCCTCGTAGCGCATCAACTTCGATACATCAATCGCCTATAACCC
Right flanking sequence: Indices 457871 -- 458370
GCAATAACCCTTTCTCACCCGCCTTCATACATCAATTGCAATCACCCTCTACCAGCCAGTTGTAC
TCATTCTCACTAATACCAGAGCACCCTCTATCAGCCAGCACCCTCTACCAGCTAATACCAGCCGC
TCATCTATATTCTAACGCTCTAAGGCCAGCTCTTTTCTCCTTCTCACCTTCGCTAGAATAGAGAA
AAGGAGATATTTATTAAGACCGCCTGCTGAGCCGGAGTGGCTTCTGGTCATGCGAAGGAGCACAT
TTCATCAGAAGAAGGAAGAATAATTATCAGGAAAGGTGCGAAGCCGCTTTCCCAACATAGGAGGG
GAAGGAAGGAGAGGACTTCACTTCTAAAACACTGACTCATTTTAGACCCCGGAGTATTCCGAAAA
AGGAGTGGATCGAGGTTTTCCGCTTCTTCTGTCTCCCTAAGCACACGCTTGCTTATGAGCAGAGG
CGTTCGCTATCCTATTGATCCCTCCCACCAATGTGATCCCTCCTA
Found at i:457977 original size:17 final size:17
Alignment explanation
Indices: 457955--457987 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
457945 CTAATACCAG
*
457955 AGCACCCTCTATCAGCC
1 AGCACCCTCTACCAGCC
457972 AGCACCCTCTACCAGC
1 AGCACCCTCTACCAGC
457988 TAATACCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.48, G:0.12, T:0.15
Consensus pattern (17 bp):
AGCACCCTCTACCAGCC
Left flanking sequence: Indices 457455 -- 457954
GGTCCCTCTTTTCTCTTGCCAGGCGGGGAGTTAGGGAAAAAGACATAGTGTAAAATTATATATTG
GTTGGGGGGTGAGCTATGTCCCAGTGGGGTTTTTGGGGGCACTAAACTAAACGAACGGAACCGAG
GAGGAGTGAGCATGGATTGCTATTGCTAGAGGGAGGGACGGATGGAAGATTAGTTACAGCCTTTC
CTTTGAAGGTCTTAAATAACTATAAGAGAACCTGGAAGAGCGTGGTCTTAAATGTTCTATGCCAC
ATAAGTGTAAGATAACCACTTAAAGAAGATATATTGATTATTCCCGCTAATGAATAGAATAGCGA
ATAGCCTCGTAGCGCATCAACTTCGATACATCAATCGCCTATAACCCTTCCCGCCTTTGATACAT
CAATTCCCGCCCTTGATACATCAATTGCAATAACCCTTTCTCACCCGCCTTCATACATCAATTGC
AATCACCCTCTACCAGCCAGTTGTACTCATTCTCACTAATACCAG
Right flanking sequence: Indices 457988 -- 458487
TAATACCAGCCGCTCATCTATATTCTAACGCTCTAAGGCCAGCTCTTTTCTCCTTCTCACCTTCG
CTAGAATAGAGAAAAGGAGATATTTATTAAGACCGCCTGCTGAGCCGGAGTGGCTTCTGGTCATG
CGAAGGAGCACATTTCATCAGAAGAAGGAAGAATAATTATCAGGAAAGGTGCGAAGCCGCTTTCC
CAACATAGGAGGGGAAGGAAGGAGAGGACTTCACTTCTAAAACACTGACTCATTTTAGACCCCGG
AGTATTCCGAAAAAGGAGTGGATCGAGGTTTTCCGCTTCTTCTGTCTCCCTAAGCACACGCTTGC
TTATGAGCAGAGGCGTTCGCTATCCTATTGATCCCTCCCACCAATGTGATCCCTCCTAGTTCAGA
CATATAGACTTAGTTCGTTGTTTCAGTTTGCTGAGTTTCGAAAGAAGTCATGACATGAAGTCACT
AGCTAATGCTTTTGAAAGCCCAATAATGGTTCATAATAGGGGCCG
Found at i:458629 original size:18 final size:18
Alignment explanation
Indices: 458606--458641 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
458596 GTTAGTCCAT
458606 TAAGCAAGGTAAGACCAG
1 TAAGCAAGGTAAGACCAG
*
458624 TAAGCAAGGTAGGACCAG
1 TAAGCAAGGTAAGACCAG
458642 CGAACTCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.31, T:0.11
Consensus pattern (18 bp):
TAAGCAAGGTAAGACCAG
Left flanking sequence: Indices 458106 -- 458605
CTTCTGGTCATGCGAAGGAGCACATTTCATCAGAAGAAGGAAGAATAATTATCAGGAAAGGTGCG
AAGCCGCTTTCCCAACATAGGAGGGGAAGGAAGGAGAGGACTTCACTTCTAAAACACTGACTCAT
TTTAGACCCCGGAGTATTCCGAAAAAGGAGTGGATCGAGGTTTTCCGCTTCTTCTGTCTCCCTAA
GCACACGCTTGCTTATGAGCAGAGGCGTTCGCTATCCTATTGATCCCTCCCACCAATGTGATCCC
TCCTAGTTCAGACATATAGACTTAGTTCGTTGTTTCAGTTTGCTGAGTTTCGAAAGAAGTCATGA
CATGAAGTCACTAGCTAATGCTTTTGAAAGCCCAATAATGGTTCATAATAGGGGCCGCCTAAAGA
CTGATCAATAGGCAGGATCCTGGGCCTTGATAGTTTACCATTACTCTACCCCGCTTCAGTGCTTT
TCCGTTCGCTTTCCTTGGCCAACCTCCTCCCTCCCGTTAGTCCAT
Right flanking sequence: Indices 458642 -- 459141
CGAACTCTATCCTTTGGCTTGTTCTCGAACTCTATCCTTCGCCATTCTCCCGTCTACCAATAATA
ATGTATTTTTGCTGGGAAGGTAGGACCAATAAGCTAGGTAGGACCAGCCTTTCACCCGAAAGGTA
GGACCAGCCGATAACCCGATGGGAAGGGTGGGGAGGCAAAGGAAAGGACAAGTCAGAAGGCAAGG
TAAAGAATGCCACGTATGTAGAGCTGCCTTAGAGGTGTGAGTGTTCTGGTATGCACATATATAAT
AGGTAAGGTCGTAAGGTCAGAGTTATTGAAGTCAGAAGGTCAGGTCGCTAGGTAAGGTCGTAAGG
TCAGAGTTAGGTCAGGTCGTTAGGTCAGAATCCATAGCAAATACTTTCAGTAGCAAATACTTTCC
TTTCAGTAGCAGCAAATGTCAGCAGTAGCAAGTATCCCACTAATATCCATAGCAGCAAATGTCAG
CAGTAGAGCGAGGAAAGATACGAATGGAAGTACAGCTTATTCTTT
Found at i:458788 original size:25 final size:25
Alignment explanation
Indices: 458742--458790 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
458732 CCAATAAGCT
** *
458742 AGGTAGGACCAGCCTTTCACCCGAA
1 AGGTAGGACCAGCCGATAACCCGAA
458767 AGGTAGGACCAGCCGATAACCCGA
1 AGGTAGGACCAGCCGATAACCCGA
458791 TGGGAAGGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.12
Consensus pattern (25 bp):
AGGTAGGACCAGCCGATAACCCGAA
Left flanking sequence: Indices 458242 -- 458741
CCCCGGAGTATTCCGAAAAAGGAGTGGATCGAGGTTTTCCGCTTCTTCTGTCTCCCTAAGCACAC
GCTTGCTTATGAGCAGAGGCGTTCGCTATCCTATTGATCCCTCCCACCAATGTGATCCCTCCTAG
TTCAGACATATAGACTTAGTTCGTTGTTTCAGTTTGCTGAGTTTCGAAAGAAGTCATGACATGAA
GTCACTAGCTAATGCTTTTGAAAGCCCAATAATGGTTCATAATAGGGGCCGCCTAAAGACTGATC
AATAGGCAGGATCCTGGGCCTTGATAGTTTACCATTACTCTACCCCGCTTCAGTGCTTTTCCGTT
CGCTTTCCTTGGCCAACCTCCTCCCTCCCGTTAGTCCATTAAGCAAGGTAAGACCAGTAAGCAAG
GTAGGACCAGCGAACTCTATCCTTTGGCTTGTTCTCGAACTCTATCCTTCGCCATTCTCCCGTCT
ACCAATAATAATGTATTTTTGCTGGGAAGGTAGGACCAATAAGCT
Right flanking sequence: Indices 458791 -- 459290
TGGGAAGGGTGGGGAGGCAAAGGAAAGGACAAGTCAGAAGGCAAGGTAAAGAATGCCACGTATGT
AGAGCTGCCTTAGAGGTGTGAGTGTTCTGGTATGCACATATATAATAGGTAAGGTCGTAAGGTCA
GAGTTATTGAAGTCAGAAGGTCAGGTCGCTAGGTAAGGTCGTAAGGTCAGAGTTAGGTCAGGTCG
TTAGGTCAGAATCCATAGCAAATACTTTCAGTAGCAAATACTTTCCTTTCAGTAGCAGCAAATGT
CAGCAGTAGCAAGTATCCCACTAATATCCATAGCAGCAAATGTCAGCAGTAGAGCGAGGAAAGAT
ACGAATGGAAGTACAGCTTATTCTTTTCTGTCAATAGAAAATATCCTTCCTGCTAGTCATAAGGA
AGGAGGGCTCCCCTGAATTAGGAGGGGGAGGAAGGATGGCTCCCCTGCCGAAGAAAGGGGAGGAA
GGCAACAGAGAAGATATCCATGTGTGAGTGTGAGTGTCTTGCTAT
Found at i:458990 original size:13 final size:13
Alignment explanation
Indices: 458938--458994 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
458928 TGAAGTCAGA
*
458938 AGGTCAGGTCGCT
1 AGGTCAGGTCGTT
* *
458951 AGGTAAGGTCGTA
1 AGGTCAGGTCGTT
*
458964 AGGTCA-G-AGTT
1 AGGTCAGGTCGTT
458975 AGGTCAGGTCGTT
1 AGGTCAGGTCGTT
458988 AGGTCAG
1 AGGTCAG
458995 AATCCATAGC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
11 8 0.23
12 2 0.06
13 25 0.71
ACGTcount: A:0.23, C:0.14, G:0.39, T:0.25
Consensus pattern (13 bp):
AGGTCAGGTCGTT
Left flanking sequence: Indices 458438 -- 458937
TCACTAGCTAATGCTTTTGAAAGCCCAATAATGGTTCATAATAGGGGCCGCCTAAAGACTGATCA
ATAGGCAGGATCCTGGGCCTTGATAGTTTACCATTACTCTACCCCGCTTCAGTGCTTTTCCGTTC
GCTTTCCTTGGCCAACCTCCTCCCTCCCGTTAGTCCATTAAGCAAGGTAAGACCAGTAAGCAAGG
TAGGACCAGCGAACTCTATCCTTTGGCTTGTTCTCGAACTCTATCCTTCGCCATTCTCCCGTCTA
CCAATAATAATGTATTTTTGCTGGGAAGGTAGGACCAATAAGCTAGGTAGGACCAGCCTTTCACC
CGAAAGGTAGGACCAGCCGATAACCCGATGGGAAGGGTGGGGAGGCAAAGGAAAGGACAAGTCAG
AAGGCAAGGTAAAGAATGCCACGTATGTAGAGCTGCCTTAGAGGTGTGAGTGTTCTGGTATGCAC
ATATATAATAGGTAAGGTCGTAAGGTCAGAGTTATTGAAGTCAGA
Right flanking sequence: Indices 458995 -- 459494
AATCCATAGCAAATACTTTCAGTAGCAAATACTTTCCTTTCAGTAGCAGCAAATGTCAGCAGTAG
CAAGTATCCCACTAATATCCATAGCAGCAAATGTCAGCAGTAGAGCGAGGAAAGATACGAATGGA
AGTACAGCTTATTCTTTTCTGTCAATAGAAAATATCCTTCCTGCTAGTCATAAGGAAGGAGGGCT
CCCCTGAATTAGGAGGGGGAGGAAGGATGGCTCCCCTGCCGAAGAAAGGGGAGGAAGGCAACAGA
GAAGATATCCATGTGTGAGTGTGAGTGTCTTGCTATTTTACCTTCCACCCGAAAGTCTATCTCTT
CTATGTGTGGAAACGGGCAAGCAAGGAACCCTTCAAGATGGAATTCTAAAAGGGATATTGAATCC
TTCGCCTATTCACCTGACAGCGATATACGGTTTACCTAAGCGCATTTCGCTGAACAGGAAAGAAG
GGCCGGGAAGGGAATCGCTGTTCGCTCACCACAGGATCCCAATTG
Found at i:463170 original size:12 final size:12
Alignment explanation
Indices: 463153--463177 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
463143 CATCCATGCA
463153 GGCTTGAAATAG
1 GGCTTGAAATAG
463165 GGCTTGAAATAG
1 GGCTTGAAATAG
463177 G
1 G
463178 TAAGAAAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.36, T:0.24
Consensus pattern (12 bp):
GGCTTGAAATAG
Left flanking sequence: Indices 462653 -- 463152
TCCTCCCAAAATAAGCATAAAATAACCAATACCATGTGCCACCATGTGAAACCATCAACCAAAAC
CATCAACTCATCTCCAAATCCATGGGCAAAGCAATGAAGCAACCTAGTGAAGTGTGCAAAGGAAT
CTCTATGGGTGGAGCGCTTCACTTCACAATGGAGTCGATGGCCTTGGGATACTCCAAGCAAGCCC
AAAATAGCAAAGTCCTCAAGGGCGTCCTCTTCAAGGCTAACCAACTCTTCCTTCAAGGTGTAACA
ACCCTCAAAATATGTGCACATGAGTAGATCCATTAAATAAGGAACTAATATAGCATAAATCTATG
TGCTAAGAGTGCCCAAATGCACTAGGGCGTCCACACCATAAGGCTCAAAACATGTAAAACCATCC
AAATAAGCTGCTGAGAGGGCTATATCCACCTAGAGAAGTATGCATATGAGGAGCGCTCTCCTAGA
ATGTGATGCCAACAATGCCAAGATGCAATCCATGTCATCCATGCA
Right flanking sequence: Indices 463178 -- 463677
TAAGAAAGCAGGCTTTAAGTTGAATTTCACCTTTTCAACTTAATTGAAAACTTCGTGCTTATATA
GCATCATAACATCGGGCTCAGTACTTTGTTGTACAACTGGAATAGTAGTGCTGGGAACTGCTTCA
TTCTTGACCTTTGTTGTCATTTCAGGCTGTATTTTATTTCCTTCAATAATCTCCTGTACTTCGCT
CCAACTTTACTTACTTGCCAATCTCTCTAATTCCAAGTTAGCATGATGAAGATATGGTGAAGTTT
TCTTCAAACTTCTTCTTTCAGAGATAACATGATGAGGATCGTAATGCCAGACTTCTCCTAGATTT
CAATTGTAAGATCTAAAAATCTTATTCACATTTGTTAGAGCTTATTTGTTTTTAACCACGAAAGA
ACAGGCTTCGGCAGGTAAAGTAAAAGAAACTTTTTTATGCTTGGAAGTAAAATGCAGATGGTTAG
AGCTCAATCTTTGCTTTATATATTCCAATGCAAACATTCTAGGTG
Found at i:470683 original size:14 final size:14
Alignment explanation
Indices: 470664--470700 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
470654 TGTGAACGAG
470664 TAGACAGGCCCTCA
1 TAGACAGGCCCTCA
470678 TAGACAGGCCCTCA
1 TAGACAGGCCCTCA
*
470692 GAGACAGGC
1 TAGACAGGC
470701 TATGAACGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.30, C:0.32, G:0.27, T:0.11
Consensus pattern (14 bp):
TAGACAGGCCCTCA
Left flanking sequence: Indices 470164 -- 470663
GCCAGTCCCGTAGCGACTTGGAGATCGAGACCGAGCATAAGCAGATAAAGTTACAGATTGAGATC
TTGCTTCTTGAGATTAAGTTTCTGATTATCCAGAGTTTCGGAGTTGAGTTATCGAGACCCAGAAG
AAGAGACAGCAGCATCAACGCCCACCTAGCTGGACAAAGCTAGCCGAACAAAGCCAGGCACAAGG
CCGAGCCAGAACATAAAGCCAGCCAGATGCAAGCCAGCCAACGCCAAAGCCAGAAGGCTATATTT
ATGCATCAGTACCAAAGCAAGCAACAGGAGGAGAGGAAGTTCCAGATACTTAAGTTACATATCCA
GCCGGCTAGTTTACTGAGTTTATTCACCATAAAAAGTAAATAATCCAGCAGATACATAGGGAGTT
AGAGAGATAGCAGGGGTAAAGACAGCAGAGACAGGCAGAGACCTATAGACAGGCAGATACAGGCC
ATCAGAGTGAGAATAAATATCCTTAAAGGTGTGGGTGTGAACGAG
Right flanking sequence: Indices 470701 -- 471200
TATGAACGAGTAAGGCAAGGTAAGGCACTGAATAATCCCCTCACTATCTGTACGAATAATCCCCT
AACTGACCTTTCCAAACTATATCTATCCTATCCAAACTCTTTCCTTACCTGTATGAACGAGTGGG
AGCAAGAGCAAGAGATGGTGAGCAAGAGATAGACTGGCTGTACGAGCCTCTATAGATGGGTGTGA
ACGAGACCTATAGACTTGCAGGGAGCGGGTTCTGAACGAGACCTATAGACTTGCAGGGTGTTGGT
CGAAGGGAGCTCTGCTCAGGTTTTACGATGGGATTTCGGATACATCTGTACGAAAATAAATATCT
TTGGTGAGGCGTTGGTAGGTGGAGACACTCATGGTTCTTCCTTTATAAATAAATATCCTTTCTGT
AAGGCTACGCTAAACCGCCACCCCGCTACGCTATCCTTTCTGCAGGTCATTCCTTCCCGTAAGCT
TTTAAAACTTTACCTCAATTATTCCAAGTTGACCATATCTGTACG
Found at i:470885 original size:23 final size:23
Alignment explanation
Indices: 470859--470911 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
470849 TGAGCAAGAG
*
470859 ATAGACTGGCTGT-ACGAGCCTCT
1 ATAGACTGGCTGTAACGAGAC-CT
*
470882 ATAGA-TGGGTGTGAACGAGACCT
1 ATAGACTGGCTGT-AACGAGACCT
470905 ATAGACT
1 ATAGACT
470912 TGCAGGGAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 6 0.24
23 12 0.48
24 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (23 bp):
ATAGACTGGCTGTAACGAGACCT
Left flanking sequence: Indices 470359 -- 470858
CCGAGCCAGAACATAAAGCCAGCCAGATGCAAGCCAGCCAACGCCAAAGCCAGAAGGCTATATTT
ATGCATCAGTACCAAAGCAAGCAACAGGAGGAGAGGAAGTTCCAGATACTTAAGTTACATATCCA
GCCGGCTAGTTTACTGAGTTTATTCACCATAAAAAGTAAATAATCCAGCAGATACATAGGGAGTT
AGAGAGATAGCAGGGGTAAAGACAGCAGAGACAGGCAGAGACCTATAGACAGGCAGATACAGGCC
ATCAGAGTGAGAATAAATATCCTTAAAGGTGTGGGTGTGAACGAGTAGACAGGCCCTCATAGACA
GGCCCTCAGAGACAGGCTATGAACGAGTAAGGCAAGGTAAGGCACTGAATAATCCCCTCACTATC
TGTACGAATAATCCCCTAACTGACCTTTCCAAACTATATCTATCCTATCCAAACTCTTTCCTTAC
CTGTATGAACGAGTGGGAGCAAGAGCAAGAGATGGTGAGCAAGAG
Right flanking sequence: Indices 470912 -- 471411
TGCAGGGAGCGGGTTCTGAACGAGACCTATAGACTTGCAGGGTGTTGGTCGAAGGGAGCTCTGCT
CAGGTTTTACGATGGGATTTCGGATACATCTGTACGAAAATAAATATCTTTGGTGAGGCGTTGGT
AGGTGGAGACACTCATGGTTCTTCCTTTATAAATAAATATCCTTTCTGTAAGGCTACGCTAAACC
GCCACCCCGCTACGCTATCCTTTCTGCAGGTCATTCCTTCCCGTAAGCTTTTAAAACTTTACCTC
AATTATTCCAAGTTGACCATATCTGTACGAAAGAGAAAGATGAGAGTTTATCCTTAGTGATTCCA
AAGGGGCTTACAAAGGAGTCATTCTCGCATTGCTTCGCAGAACAAAGAGCCCACACTAACGAGTA
CAACTGGACTTACCAGCCTGAACTATATGAACGGGTAAGGCAAGGTTATGAACGGGTAATGCAGA
GACAGGCGGGCTCGGTCCTTCCTTACAGCGGCTCGATCCTCCCTT
Found at i:471432 original size:26 final size:26
Alignment explanation
Indices: 471402--471473 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
471392 CAGCGGCTCG
* *
471402 ATCCTCCCTTACGGGGGCGGTGCGGC
1 ATCCTTCCTTACGGGAGCGGTGCGGC
471428 ATCCTTCCTTACGGGAGCGGTGCGGC
1 ATCCTTCCTTACGGGAGCGGTGCGGC
471454 ATCCTTCCTTACGGGAGCGG
1 ATCCTTCCTTACGGGAGCGG
471474 CTCGGCCATC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.11, C:0.32, G:0.35, T:0.22
Consensus pattern (26 bp):
ATCCTTCCTTACGGGAGCGGTGCGGC
Left flanking sequence: Indices 470902 -- 471401
CCTATAGACTTGCAGGGAGCGGGTTCTGAACGAGACCTATAGACTTGCAGGGTGTTGGTCGAAGG
GAGCTCTGCTCAGGTTTTACGATGGGATTTCGGATACATCTGTACGAAAATAAATATCTTTGGTG
AGGCGTTGGTAGGTGGAGACACTCATGGTTCTTCCTTTATAAATAAATATCCTTTCTGTAAGGCT
ACGCTAAACCGCCACCCCGCTACGCTATCCTTTCTGCAGGTCATTCCTTCCCGTAAGCTTTTAAA
ACTTTACCTCAATTATTCCAAGTTGACCATATCTGTACGAAAGAGAAAGATGAGAGTTTATCCTT
AGTGATTCCAAAGGGGCTTACAAAGGAGTCATTCTCGCATTGCTTCGCAGAACAAAGAGCCCACA
CTAACGAGTACAACTGGACTTACCAGCCTGAACTATATGAACGGGTAAGGCAAGGTTATGAACGG
GTAATGCAGAGACAGGCGGGCTCGGTCCTTCCTTACAGCGGCTCG
Right flanking sequence: Indices 471474 -- 471973
CTCGGCCATCTTGTCCAAGCGAACCGGTTCCTTATCTGTACAAAAGGCCCATTTCTTTAGTCAAT
TCTTTCTTGTATTGGCTTTTCTATATGGCTTTTCAATATCCATCAAAGACTCCTGGACGGGTGAG
TCAGCCTTTAAAATGACTCCTTTATCGGTGAGTCAGTCTTTCTAAGGACTCCTTTAATTTTCACG
TAGAATAATAGTACGAGATCGATCTCCCGATCTCCTTGAACTGGACTTCCTCATCAGGCCAAAGG
CGCAAGATCGATGCGCTTTTTAATATAATTTCCTTACTAGATTGATAGACCTTCCTTCCTATATG
AGACCATACAAAAACGACTCCTTTATTAAGGATGGTAACTCACGGGATTAAGGATGGTAACTCAC
GGGATTAAGGATGGTAACTCACGGGTTCGGATGGTAACTCACAGGTTCGGAGGTCTCCTTTGTAT
CGACTCCTTAAATTACAAGTAAGGCCTTACTTATCAGGCCAAAGG
Found at i:471479 original size:26 final size:26
Alignment explanation
Indices: 471375--471479 Score: 111
Period size: 26 Copynumber: 4.3 Consensus size: 26
471365 GAGACAGGCG
471375 GGCTCGG--TCCTTCCTTAC---AGC
1 GGCTCGGCATCCTTCCTTACGGGAGC
* *
471396 GGCTC-G-ATCCTCCCTTACGGGGGC
1 GGCTCGGCATCCTTCCTTACGGGAGC
471420 GG-TGCGGCATCCTTCCTTACGGGAGC
1 GGCT-CGGCATCCTTCCTTACGGGAGC
471446 GG-TGCGGCATCCTTCCTTACGGGAGC
1 GGCT-CGGCATCCTTCCTTACGGGAGC
471472 GGCTCGGC
1 GGCTCGGC
471480 CATCTTGTCC
Statistics
Matches: 72, Mismatches: 4, Indels: 11
0.83 0.05 0.13
Matches are distributed among these distances:
20 1 0.01
21 15 0.21
23 1 0.01
24 5 0.07
25 1 0.01
26 48 0.67
27 1 0.01
ACGTcount: A:0.10, C:0.34, G:0.33, T:0.23
Consensus pattern (26 bp):
GGCTCGGCATCCTTCCTTACGGGAGC
Left flanking sequence: Indices 470875 -- 471374
AGCCTCTATAGATGGGTGTGAACGAGACCTATAGACTTGCAGGGAGCGGGTTCTGAACGAGACCT
ATAGACTTGCAGGGTGTTGGTCGAAGGGAGCTCTGCTCAGGTTTTACGATGGGATTTCGGATACA
TCTGTACGAAAATAAATATCTTTGGTGAGGCGTTGGTAGGTGGAGACACTCATGGTTCTTCCTTT
ATAAATAAATATCCTTTCTGTAAGGCTACGCTAAACCGCCACCCCGCTACGCTATCCTTTCTGCA
GGTCATTCCTTCCCGTAAGCTTTTAAAACTTTACCTCAATTATTCCAAGTTGACCATATCTGTAC
GAAAGAGAAAGATGAGAGTTTATCCTTAGTGATTCCAAAGGGGCTTACAAAGGAGTCATTCTCGC
ATTGCTTCGCAGAACAAAGAGCCCACACTAACGAGTACAACTGGACTTACCAGCCTGAACTATAT
GAACGGGTAAGGCAAGGTTATGAACGGGTAATGCAGAGACAGGCG
Right flanking sequence: Indices 471480 -- 471979
CATCTTGTCCAAGCGAACCGGTTCCTTATCTGTACAAAAGGCCCATTTCTTTAGTCAATTCTTTC
TTGTATTGGCTTTTCTATATGGCTTTTCAATATCCATCAAAGACTCCTGGACGGGTGAGTCAGCC
TTTAAAATGACTCCTTTATCGGTGAGTCAGTCTTTCTAAGGACTCCTTTAATTTTCACGTAGAAT
AATAGTACGAGATCGATCTCCCGATCTCCTTGAACTGGACTTCCTCATCAGGCCAAAGGCGCAAG
ATCGATGCGCTTTTTAATATAATTTCCTTACTAGATTGATAGACCTTCCTTCCTATATGAGACCA
TACAAAAACGACTCCTTTATTAAGGATGGTAACTCACGGGATTAAGGATGGTAACTCACGGGATT
AAGGATGGTAACTCACGGGTTCGGATGGTAACTCACAGGTTCGGAGGTCTCCTTTGTATCGACTC
CTTAAATTACAAGTAAGGCCTTACTTATCAGGCCAAAGGCGCAAG
Found at i:471634 original size:32 final size:32
Alignment explanation
Indices: 471598--471659 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
471588 CTCCTGGACG
*
471598 GGTGAGTCAGCCTTTAAAATGACTCCTTTATC
1 GGTGAGTCAGCCTTTAAAAGGACTCCTTTATC
* **
471630 GGTGAGTCAGTCTTTCTAAGGACTCCTTTA
1 GGTGAGTCAGCCTTTAAAAGGACTCCTTTA
471660 ATTTTCACGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (32 bp):
GGTGAGTCAGCCTTTAAAAGGACTCCTTTATC
Left flanking sequence: Indices 471098 -- 471597
CGCTAAACCGCCACCCCGCTACGCTATCCTTTCTGCAGGTCATTCCTTCCCGTAAGCTTTTAAAA
CTTTACCTCAATTATTCCAAGTTGACCATATCTGTACGAAAGAGAAAGATGAGAGTTTATCCTTA
GTGATTCCAAAGGGGCTTACAAAGGAGTCATTCTCGCATTGCTTCGCAGAACAAAGAGCCCACAC
TAACGAGTACAACTGGACTTACCAGCCTGAACTATATGAACGGGTAAGGCAAGGTTATGAACGGG
TAATGCAGAGACAGGCGGGCTCGGTCCTTCCTTACAGCGGCTCGATCCTCCCTTACGGGGGCGGT
GCGGCATCCTTCCTTACGGGAGCGGTGCGGCATCCTTCCTTACGGGAGCGGCTCGGCCATCTTGT
CCAAGCGAACCGGTTCCTTATCTGTACAAAAGGCCCATTTCTTTAGTCAATTCTTTCTTGTATTG
GCTTTTCTATATGGCTTTTCAATATCCATCAAAGACTCCTGGACG
Right flanking sequence: Indices 471660 -- 472159
ATTTTCACGTAGAATAATAGTACGAGATCGATCTCCCGATCTCCTTGAACTGGACTTCCTCATCA
GGCCAAAGGCGCAAGATCGATGCGCTTTTTAATATAATTTCCTTACTAGATTGATAGACCTTCCT
TCCTATATGAGACCATACAAAAACGACTCCTTTATTAAGGATGGTAACTCACGGGATTAAGGATG
GTAACTCACGGGATTAAGGATGGTAACTCACGGGTTCGGATGGTAACTCACAGGTTCGGAGGTCT
CCTTTGTATCGACTCCTTAAATTACAAGTAAGGCCTTACTTATCAGGCCAAAGGCGCAAGACTGT
ACTTACCACTCAGGCCAAAGGCGCAAGTCAGGCCTTGGGTGTGAACGAGTAAGACTGTCGTATTG
ACGCCATACTAAGAGATAATATTAATGCTTGCTTTTCAGTAAGAGAAACACCGTATTATCGTTCA
CCGATAGTTATCCACAGAATAATAAATCAGGTATAACTAGAATAA
Found at i:471914 original size:20 final size:22
Alignment explanation
Indices: 471823--471905 Score: 143
Period size: 22 Copynumber: 3.9 Consensus size: 22
471813 CGACTCCTTT
471823 ATTAAGGATGGTAACTCACGGG
1 ATTAAGGATGGTAACTCACGGG
471845 ATTAAGGATGGTAACTCACGGG
1 ATTAAGGATGGTAACTCACGGG
471867 ATTAAGGATGGTAACTCACGGG
1 ATTAAGGATGGTAACTCACGGG
*
471889 -TT-CGGATGGTAACTCAC
1 ATTAAGGATGGTAACTCAC
471906 AGGTTCGGAG
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
20 14 0.23
21 2 0.03
22 44 0.73
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (22 bp):
ATTAAGGATGGTAACTCACGGG
Left flanking sequence: Indices 471323 -- 471822
ACTATATGAACGGGTAAGGCAAGGTTATGAACGGGTAATGCAGAGACAGGCGGGCTCGGTCCTTC
CTTACAGCGGCTCGATCCTCCCTTACGGGGGCGGTGCGGCATCCTTCCTTACGGGAGCGGTGCGG
CATCCTTCCTTACGGGAGCGGCTCGGCCATCTTGTCCAAGCGAACCGGTTCCTTATCTGTACAAA
AGGCCCATTTCTTTAGTCAATTCTTTCTTGTATTGGCTTTTCTATATGGCTTTTCAATATCCATC
AAAGACTCCTGGACGGGTGAGTCAGCCTTTAAAATGACTCCTTTATCGGTGAGTCAGTCTTTCTA
AGGACTCCTTTAATTTTCACGTAGAATAATAGTACGAGATCGATCTCCCGATCTCCTTGAACTGG
ACTTCCTCATCAGGCCAAAGGCGCAAGATCGATGCGCTTTTTAATATAATTTCCTTACTAGATTG
ATAGACCTTCCTTCCTATATGAGACCATACAAAAACGACTCCTTT
Right flanking sequence: Indices 471906 -- 472405
AGGTTCGGAGGTCTCCTTTGTATCGACTCCTTAAATTACAAGTAAGGCCTTACTTATCAGGCCAA
AGGCGCAAGACTGTACTTACCACTCAGGCCAAAGGCGCAAGTCAGGCCTTGGGTGTGAACGAGTA
AGACTGTCGTATTGACGCCATACTAAGAGATAATATTAATGCTTGCTTTTCAGTAAGAGAAACAC
CGTATTATCGTTCACCGATAGTTATCCACAGAATAATAAATCAGGTATAACTAGAATAAGAATCT
ATTGAACCAAGCATTCCCTACCTGGGATAAGAGGATAAGGAGATCTTGAACCAGGTATCCCTTAA
CCGCCTAAAGGGATTGATTAGACTGAACCTTTAGTACCTTCCTTCGGTCGGGGGAATACCCTGCA
TCGCCTGCCTCATCGCTATGAGTGTTGCGTGGAAAGCTGTACGTACGCCTTCCCCACGAAGTGTG
GGAACAACAATGCGGTGCCAACAACATGGTGTGTAGAACATGAAC
Found at i:472661 original size:34 final size:33
Alignment explanation
Indices: 472494--472665 Score: 94
Period size: 34 Copynumber: 5.2 Consensus size: 33
472484 CCCCTCACCC
*
472494 GCTGTCCCTCTCCCACGAATGATATCCTCACTTCTA
1 GCTGTCCCTCTCCCACGAATGATAT-C-C-CTGCTA
* *
472530 GCTGT-CCT-TCCCACTG-ATGCTATCCTCTACT-
1 GCTGTCCCTCTCCCAC-GAATGATATCC-CTGCTA
*
472561 GCTG-CCTCTCTCCCACGAATGATATCTCTTGC-A
1 GCTGTCC-CTCTCCCACGAATGATATC-CCTGCTA
* ** * *
472594 G--G-CCCACCTCCCACTCATGCT-TCCCTCACCTA
1 GCTGTCCC-TCTCCCACGAATGATATCCCT--GCTA
472626 GCTGTCCCTCTCCCACGAATGATATCCACTGCTA
1 GCTGTCCCTCTCCCACGAATGATATCC-CTGCTA
472660 GCTGTC
1 GCTGTC
472666 TCTACCGCTA
Statistics
Matches: 103, Mismatches: 17, Indels: 34
0.67 0.11 0.22
Matches are distributed among these distances:
29 2 0.02
30 3 0.03
31 20 0.19
32 10 0.10
33 17 0.17
34 34 0.33
35 10 0.10
36 7 0.07
ACGTcount: A:0.17, C:0.41, G:0.13, T:0.29
Consensus pattern (33 bp):
GCTGTCCCTCTCCCACGAATGATATCCCTGCTA
Left flanking sequence: Indices 471994 -- 472493
TCAGGCCAAAGGCGCAAGTCAGGCCTTGGGTGTGAACGAGTAAGACTGTCGTATTGACGCCATAC
TAAGAGATAATATTAATGCTTGCTTTTCAGTAAGAGAAACACCGTATTATCGTTCACCGATAGTT
ATCCACAGAATAATAAATCAGGTATAACTAGAATAAGAATCTATTGAACCAAGCATTCCCTACCT
GGGATAAGAGGATAAGGAGATCTTGAACCAGGTATCCCTTAACCGCCTAAAGGGATTGATTAGAC
TGAACCTTTAGTACCTTCCTTCGGTCGGGGGAATACCCTGCATCGCCTGCCTCATCGCTATGAGT
GTTGCGTGGAAAGCTGTACGTACGCCTTCCCCACGAAGTGTGGGAACAACAATGCGGTGCCAACA
ACATGGTGTGTAGAACATGAACATGAAATGAACATGGTATCTTACTAACGCACACTCACCGCTAC
TGCTTCCCTCGCAGGCCGTCTCTCCCACTGATGCTCCCCTCACCC
Right flanking sequence: Indices 472666 -- 473165
TCTACCGCTAATGTACTTCCTCTATTGCAGGCCATACCTCCCACTATTGTACTCCCTCTATTGCA
GCCCCCACCTCCCACTAACGCTCTCCATGGAATAAGAACTATCACTTGAACTTGATGAACTACCA
CTAACACCACCTCCCACAACAACCACTTCCCATCGTAGCCTCACTACTCGACATCCTATCGCCAC
CTACCTAGAATACGTAACGCTCTTACGCAATCGCTTCTCGCTTTGCATTCCAATCAATATCAGTT
CCAGGGACCGTGTTTAAGAGGCTTTGCTCATAACGTTGTTCACAATAGGAAGGCCCGGCGCAAGC
TTTGGCACCTGTATATATTTTAATAACCCCCAAGCCCGCGGATAAAACGCCAACAATTGAATTGA
CCCAAGGCCTGCAGTCTCCGAGATCGTCAAAGCGTCCCGTTGCGGGTAACACAAGGTGTGGTGTA
CCGACGCCACCCAAAAAAGGAAAGGAAGACAAAACAGGAGAACCA
Found at i:472724 original size:36 final size:36
Alignment explanation
Indices: 472677--472747 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
472667 CTACCGCTAA
* * *
472677 TGTACTTCCTCTATTGCAGGCCATACCTCCCACTAT
1 TGTACTCCCTCTATTGCAGCCCACACCTCCCACTAT
*
472713 TGTACTCCCTCTATTGCAGCCCCCACCTCCCACTA
1 TGTACTCCCTCTATTGCAGCCCACACCTCCCACTA
472748 ACGCTCTCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.18, C:0.42, G:0.10, T:0.30
Consensus pattern (36 bp):
TGTACTCCCTCTATTGCAGCCCACACCTCCCACTAT
Left flanking sequence: Indices 472177 -- 472676
CATTCCCTACCTGGGATAAGAGGATAAGGAGATCTTGAACCAGGTATCCCTTAACCGCCTAAAGG
GATTGATTAGACTGAACCTTTAGTACCTTCCTTCGGTCGGGGGAATACCCTGCATCGCCTGCCTC
ATCGCTATGAGTGTTGCGTGGAAAGCTGTACGTACGCCTTCCCCACGAAGTGTGGGAACAACAAT
GCGGTGCCAACAACATGGTGTGTAGAACATGAACATGAAATGAACATGGTATCTTACTAACGCAC
ACTCACCGCTACTGCTTCCCTCGCAGGCCGTCTCTCCCACTGATGCTCCCCTCACCCGCTGTCCC
TCTCCCACGAATGATATCCTCACTTCTAGCTGTCCTTCCCACTGATGCTATCCTCTACTGCTGCC
TCTCTCCCACGAATGATATCTCTTGCAGGCCCACCTCCCACTCATGCTTCCCTCACCTAGCTGTC
CCTCTCCCACGAATGATATCCACTGCTAGCTGTCTCTACCGCTAA
Right flanking sequence: Indices 472748 -- 473247
ACGCTCTCCATGGAATAAGAACTATCACTTGAACTTGATGAACTACCACTAACACCACCTCCCAC
AACAACCACTTCCCATCGTAGCCTCACTACTCGACATCCTATCGCCACCTACCTAGAATACGTAA
CGCTCTTACGCAATCGCTTCTCGCTTTGCATTCCAATCAATATCAGTTCCAGGGACCGTGTTTAA
GAGGCTTTGCTCATAACGTTGTTCACAATAGGAAGGCCCGGCGCAAGCTTTGGCACCTGTATATA
TTTTAATAACCCCCAAGCCCGCGGATAAAACGCCAACAATTGAATTGACCCAAGGCCTGCAGTCT
CCGAGATCGTCAAAGCGTCCCGTTGCGGGTAACACAAGGTGTGGTGTACCGACGCCACCCAAAAA
AGGAAAGGAAGACAAAACAGGAGAACCAAAAAGGAGGGTTTTGGAGGGTGGCGCTTACTACAGCA
AATCGTAGTACGCAGGTGGGTAGCGGACCCAGACGGGCAAGAGGA
Found at i:475454 original size:15 final size:16
Alignment explanation
Indices: 475434--475463 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
475424 ATTCTTTTGG
475434 TTTTTCCATC-CAGGT
1 TTTTTCCATCTCAGGT
475449 TTTTTCCATCTCAGG
1 TTTTTCCATCTCAGG
475464 CTGGATGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.27, G:0.13, T:0.47
Consensus pattern (16 bp):
TTTTTCCATCTCAGGT
Left flanking sequence: Indices 474934 -- 475433
TCTATTAAGAATGTTCTACTCACTTTTAAGATAAATAATATACTAGGGAAACTTAAGCCTTATAG
CCTTATAGTTTCTTCTGAGAAAGAGGGGAAAGGTATATTGTTTAATGTCCTTGCAAAGTTCACTG
ATTCTTATCCACCTAGTGATATTAGATGGATGCTCGAGAATATTTATCGAGAACCCTATTCTTAT
CCGCCTAGTGATTGTAGATACAAGCTACAGAATCTGTATCTAGATCCCACCACATTTCCGATTGG
AGTTTGGGGACTTGCAGACTGGGATTATGTTCTTCAAACAATGATGTTGGAAGATCCATATATAC
ATTATGATGTATCCCCAGAAGATTGGCCCTCTATAATAAGAATCAATAAGCTTATAAAGATAATG
AGGGGGGAGCTCTGATAGGGTTCGAATGAAGCTTAATAGTCAAGTGCAAAGAATGCTAATTTACC
TTCGTAATTTCCATTTCTGTTCCTCCTTCAATCCCATTCTTTTGG
Right flanking sequence: Indices 475464 -- 475963
CTGGATGGGTGGAGGCACACAATGGGACGGGGTTGGTGTTGGACCAACGTGGTGTGTGATGCCTG
AGATGGAATGTCCTTAGATGCTAGAAATGAGCGCTACCTGGAAAGTCAATCAATCCCTCTCCTTT
CAGTAAAACAGAATTCCAGCCTTAACCAGGACATGAAGAGGGCAAAGGCAAGGTTTGAGGCCCTT
CTCTTTGGGGAATTTGCATTCATATTATATATGTTATTATGCAAGGCTCCTGCCCCTAAGCCTTT
AAGGAACTAGAAGCCTTACCCTGAAAGGGGACTACTGATAGATACTCAGTCTTACTGTATCAGAG
GATCGATACTCAGTCTTACTGTATCAGAGACTCAGTCCTACTGTATATTTGCTATAGCCTCCACC
TCTAAGTTAAGTTTGGGGACACCCGAGCTCATAGCCTCCACGCAGTTGACACCAAGGGAACACGA
TCGATTGCCCTTATATATAAGTCAAGACGATCGATTGACTGAACG
Found at i:475966 original size:16 final size:16
Alignment explanation
Indices: 475945--475979 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
475935 ATAAGTCAAG
475945 ACGATCGATTGACTGA
1 ACGATCGATTGACTGA
475961 ACGATCGATTGACTGA
1 ACGATCGATTGACTGA
475977 ACG
1 ACG
475980 GTGGACACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (16 bp):
ACGATCGATTGACTGA
Left flanking sequence: Indices 475445 -- 475944
AGGTTTTTTCCATCTCAGGCTGGATGGGTGGAGGCACACAATGGGACGGGGTTGGTGTTGGACCA
ACGTGGTGTGTGATGCCTGAGATGGAATGTCCTTAGATGCTAGAAATGAGCGCTACCTGGAAAGT
CAATCAATCCCTCTCCTTTCAGTAAAACAGAATTCCAGCCTTAACCAGGACATGAAGAGGGCAAA
GGCAAGGTTTGAGGCCCTTCTCTTTGGGGAATTTGCATTCATATTATATATGTTATTATGCAAGG
CTCCTGCCCCTAAGCCTTTAAGGAACTAGAAGCCTTACCCTGAAAGGGGACTACTGATAGATACT
CAGTCTTACTGTATCAGAGGATCGATACTCAGTCTTACTGTATCAGAGACTCAGTCCTACTGTAT
ATTTGCTATAGCCTCCACCTCTAAGTTAAGTTTGGGGACACCCGAGCTCATAGCCTCCACGCAGT
TGACACCAAGGGAACACGATCGATTGCCCTTATATATAAGTCAAG
Right flanking sequence: Indices 475980 -- 476479
GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCAGTGGACACCTGAGCTCCCGGATGT
GTATGGGCCTCCACGCAGTGGACACCTCAGTCAAGTTGTGTCAAGTTGTGTCAAGTTGTGTTTCC
TTTCAGTCAAGTTGTGTCAAGTTGTGTTCCCTTTCTGTCAATCAATCGACCTAAGAAGGAGGGTC
AGTAAGGATCGTGATTTTGAGACTATTTCTTATATCTATTAGGGCCTTAGTTATGTTGAGGCACA
ATAGATCTATTGACCACCTCCTCAACAACTACGGTAAGGGCTTCAGGGGTCCGGCCCTCGCGCTC
AGCATTCTGCTAGCTTGTGTGACCGAACGCTTGTGTGTCTGGCTAGTAAAGGGATGCCCCGGAAA
GGGTAGCCCTTTACGATAGGTCTTCTAGTTATTGATGGTGCTACCTCTGCCTATTGAAAGGTGCT
AGTGCTGGTGCTAGGTAAGTAACTCGCTCTGGATCTATCTAGCTG
Found at i:476037 original size:41 final size:41
Alignment explanation
Indices: 475980--476071 Score: 184
Period size: 41 Copynumber: 2.2 Consensus size: 41
475970 TGACTGAACG
475980 GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
1 GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
476021 GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
1 GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
476062 GTGGACACCT
1 GTGGACACCT
476072 CAGTCAAGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (41 bp):
GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
Left flanking sequence: Indices 475480 -- 475979
ACACAATGGGACGGGGTTGGTGTTGGACCAACGTGGTGTGTGATGCCTGAGATGGAATGTCCTTA
GATGCTAGAAATGAGCGCTACCTGGAAAGTCAATCAATCCCTCTCCTTTCAGTAAAACAGAATTC
CAGCCTTAACCAGGACATGAAGAGGGCAAAGGCAAGGTTTGAGGCCCTTCTCTTTGGGGAATTTG
CATTCATATTATATATGTTATTATGCAAGGCTCCTGCCCCTAAGCCTTTAAGGAACTAGAAGCCT
TACCCTGAAAGGGGACTACTGATAGATACTCAGTCTTACTGTATCAGAGGATCGATACTCAGTCT
TACTGTATCAGAGACTCAGTCCTACTGTATATTTGCTATAGCCTCCACCTCTAAGTTAAGTTTGG
GGACACCCGAGCTCATAGCCTCCACGCAGTTGACACCAAGGGAACACGATCGATTGCCCTTATAT
ATAAGTCAAGACGATCGATTGACTGAACGATCGATTGACTGAACG
Right flanking sequence: Indices 476072 -- 476571
CAGTCAAGTTGTGTCAAGTTGTGTCAAGTTGTGTTTCCTTTCAGTCAAGTTGTGTCAAGTTGTGT
TCCCTTTCTGTCAATCAATCGACCTAAGAAGGAGGGTCAGTAAGGATCGTGATTTTGAGACTATT
TCTTATATCTATTAGGGCCTTAGTTATGTTGAGGCACAATAGATCTATTGACCACCTCCTCAACA
ACTACGGTAAGGGCTTCAGGGGTCCGGCCCTCGCGCTCAGCATTCTGCTAGCTTGTGTGACCGAA
CGCTTGTGTGTCTGGCTAGTAAAGGGATGCCCCGGAAAGGGTAGCCCTTTACGATAGGTCTTCTA
GTTATTGATGGTGCTACCTCTGCCTATTGAAAGGTGCTAGTGCTGGTGCTAGGTAAGTAACTCGC
TCTGGATCTATCTAGCTGGTCGAATCTACCGAAACTGATCCTTCAGCACAACGATAGCACCTCTC
ACCTAGCCATCCCTACTCCCTCTACTCCTAGCTGTTGCCTATCTC
Found at i:476089 original size:10 final size:10
Alignment explanation
Indices: 476074--476136 Score: 65
Period size: 10 Copynumber: 6.2 Consensus size: 10
476064 GGACACCTCA
476074 GTCAAGTTGT
1 GTCAAGTTGT
476084 GTCAAGTTGT
1 GTCAAGTTGT
476094 GTCAAGTTGT
1 GTCAAGTTGT
** **
476104 GTTTC-CTTTCA
1 G--TCAAGTTGT
476115 GTCAAGTTGT
1 GTCAAGTTGT
476125 GTCAAGTTGT
1 GTCAAGTTGT
476135 GT
1 GT
476137 TCCCTTTCTG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
9 2 0.05
10 35 0.83
11 3 0.07
12 2 0.05
ACGTcount: A:0.17, C:0.13, G:0.27, T:0.43
Consensus pattern (10 bp):
GTCAAGTTGT
Left flanking sequence: Indices 475574 -- 476073
TCAATCAATCCCTCTCCTTTCAGTAAAACAGAATTCCAGCCTTAACCAGGACATGAAGAGGGCAA
AGGCAAGGTTTGAGGCCCTTCTCTTTGGGGAATTTGCATTCATATTATATATGTTATTATGCAAG
GCTCCTGCCCCTAAGCCTTTAAGGAACTAGAAGCCTTACCCTGAAAGGGGACTACTGATAGATAC
TCAGTCTTACTGTATCAGAGGATCGATACTCAGTCTTACTGTATCAGAGACTCAGTCCTACTGTA
TATTTGCTATAGCCTCCACCTCTAAGTTAAGTTTGGGGACACCCGAGCTCATAGCCTCCACGCAG
TTGACACCAAGGGAACACGATCGATTGCCCTTATATATAAGTCAAGACGATCGATTGACTGAACG
ATCGATTGACTGAACGGTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCAGTGGACAC
CTGAGCTCCCGGATGTGTATGGGCCTCCACGCAGTGGACACCTCA
Right flanking sequence: Indices 476137 -- 476636
TCCCTTTCTGTCAATCAATCGACCTAAGAAGGAGGGTCAGTAAGGATCGTGATTTTGAGACTATT
TCTTATATCTATTAGGGCCTTAGTTATGTTGAGGCACAATAGATCTATTGACCACCTCCTCAACA
ACTACGGTAAGGGCTTCAGGGGTCCGGCCCTCGCGCTCAGCATTCTGCTAGCTTGTGTGACCGAA
CGCTTGTGTGTCTGGCTAGTAAAGGGATGCCCCGGAAAGGGTAGCCCTTTACGATAGGTCTTCTA
GTTATTGATGGTGCTACCTCTGCCTATTGAAAGGTGCTAGTGCTGGTGCTAGGTAAGTAACTCGC
TCTGGATCTATCTAGCTGGTCGAATCTACCGAAACTGATCCTTCAGCACAACGATAGCACCTCTC
ACCTAGCCATCCCTACTCCCTCTACTCCTAGCTGTTGCCTATCTCCCCAATTCTACACTTCAGAG
CCTTAAGCCTCTCCTTCCTCTTCTAACAAGGCTCCTTAACTGTTC
Found at i:476122 original size:31 final size:31
Alignment explanation
Indices: 476084--476150 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
476074 GTCAAGTTGT
*
476084 GTCAAGTTGTGTCAAGTTGTGTTTCCTTTCA
1 GTCAAGTTGTGTCAAGTTGTGTTCCCTTTCA
*
476115 GTCAAGTTGTGTCAAGTTGTGTTCCCTTTCT
1 GTCAAGTTGTGTCAAGTTGTGTTCCCTTTCA
476146 GTCAA
1 GTCAA
476151 TCAATCGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.43
Consensus pattern (31 bp):
GTCAAGTTGTGTCAAGTTGTGTTCCCTTTCA
Left flanking sequence: Indices 475584 -- 476083
CCTCTCCTTTCAGTAAAACAGAATTCCAGCCTTAACCAGGACATGAAGAGGGCAAAGGCAAGGTT
TGAGGCCCTTCTCTTTGGGGAATTTGCATTCATATTATATATGTTATTATGCAAGGCTCCTGCCC
CTAAGCCTTTAAGGAACTAGAAGCCTTACCCTGAAAGGGGACTACTGATAGATACTCAGTCTTAC
TGTATCAGAGGATCGATACTCAGTCTTACTGTATCAGAGACTCAGTCCTACTGTATATTTGCTAT
AGCCTCCACCTCTAAGTTAAGTTTGGGGACACCCGAGCTCATAGCCTCCACGCAGTTGACACCAA
GGGAACACGATCGATTGCCCTTATATATAAGTCAAGACGATCGATTGACTGAACGATCGATTGAC
TGAACGGTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCAGTGGACACCTGAGCTCCC
GGATGTGTATGGGCCTCCACGCAGTGGACACCTCAGTCAAGTTGT
Right flanking sequence: Indices 476151 -- 476650
TCAATCGACCTAAGAAGGAGGGTCAGTAAGGATCGTGATTTTGAGACTATTTCTTATATCTATTA
GGGCCTTAGTTATGTTGAGGCACAATAGATCTATTGACCACCTCCTCAACAACTACGGTAAGGGC
TTCAGGGGTCCGGCCCTCGCGCTCAGCATTCTGCTAGCTTGTGTGACCGAACGCTTGTGTGTCTG
GCTAGTAAAGGGATGCCCCGGAAAGGGTAGCCCTTTACGATAGGTCTTCTAGTTATTGATGGTGC
TACCTCTGCCTATTGAAAGGTGCTAGTGCTGGTGCTAGGTAAGTAACTCGCTCTGGATCTATCTA
GCTGGTCGAATCTACCGAAACTGATCCTTCAGCACAACGATAGCACCTCTCACCTAGCCATCCCT
ACTCCCTCTACTCCTAGCTGTTGCCTATCTCCCCAATTCTACACTTCAGAGCCTTAAGCCTCTCC
TTCCTCTTCTAACAAGGCTCCTTAACTGTTCCGTGGTTTTAGCTC
Found at i:478493 original size:15 final size:15
Alignment explanation
Indices: 478473--478536 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
478463 CATACGAATC
*
478473 TTGGAACATCACTTG
1 TTGGAACACCACTTG
* *
478488 TTGGAACA--TC-GG
1 TTGGAACACCACTTG
*
478500 T-GGAACACCACTCG
1 TTGGAACACCACTTG
*
478514 TAGGAACACCACTTG
1 TTGGAACACCACTTG
478529 TTGGAACA
1 TTGGAACA
478537 GGTGGGGATG
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
11 6 0.15
12 2 0.05
13 2 0.05
14 2 0.05
15 27 0.69
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (15 bp):
TTGGAACACCACTTG
Left flanking sequence: Indices 477973 -- 478472
GGGTTGGTCCCATCCCATGACTTGCCTAATGAAAACGACGAGTGTTGCTACTCCTGCTCATGCTC
ATGGGTAAACAACTGGTGCTAGTGATATGTATCTATCTGTACGATATGCTACCTATGCCTTAGCC
TCTGTAACCCATGTGCCTTACTCTGAAACTAGTGGGGGTGCTAGTGATGCCTTCGCTCTAACTAC
CTCTGCATCTGCATCTGCCTATTGTGCTCTAGCTCACTCCGATGCTTGAAATGCTACCCATGCTC
CTACCCCTGCCCATGCCTTTGCCTCTACGGGTCTCGCTCTTCAACTGGATCAACGTAAAGTACTG
ATGGTGCTGGGTCTCGCCTGGGTCTTGATCCGGAAATGAGTACACTTCTGGGGTATTAGGGTTAT
GCCTTTGCTCCTCCTGCACCTCAAGGATATGGGACTAGATATGGAACACCTGGATAGACTATAGG
TAGGTATGTGCCCCGGAACATCGCTTCTAGGAAAACATACGAATC
Right flanking sequence: Indices 478537 -- 479036
GGTGGGGATGCCGGGACAGAAGCTACTGAAGCTGCTACTCGTCCTGGATCAACTGAATAACCAAC
TGACGCGCTGCTCCTGCCTTTAGAAGTCTTAGCTTTTCCTGTAAGAAATATTTCCTCTCCCTTTG
GTCGAGCCTGCTAGCGCATCCTCATTTAATAATAAGCCGGTTTCACTAGCAGCATTCCCAGGAGC
GTACCTAGCAGCACAGCCTACAGAGTTGATTAAGCCGTTGATTCAGGTGATGAAGGCAACTTAGT
TGATTCCGAAGTAGGTTCAGTAGAGGGGAGCGGATTGCTCATATACATAATATCTCTTGCACCTA
TTACCCATCCGGTTACCCATAAGCAAGGGCAGGTGCAGCATAAGTAAAGGCGGAGGTCTCGGTTT
ACCCAAGCTGCTGCTTATTTCGTCTTAGTTACTGGTGCTAGATATATTGCTGCTGGGTCTTTTGT
ACGGGTTACCCATTGAAATGCCCCTAGATGTGTATAGCTTCCTGA
Found at i:479902 original size:21 final size:21
Alignment explanation
Indices: 479876--479918 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
479866 GGTAATAGGC
*
479876 ACATAACATAACAGATAATAG
1 ACATAACACAACAGATAATAG
479897 ACATAACACAACAGATAATAG
1 ACATAACACAACAGATAATAG
479918 A
1 A
479919 ATAGGCTGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.58, C:0.16, G:0.09, T:0.16
Consensus pattern (21 bp):
ACATAACACAACAGATAATAG
Left flanking sequence: Indices 479376 -- 479875
TCAGTTTGAACGAGAGGAAGAAGCTTAAATTCCAGGGTCATAACCCGTTGGAGATTGAGATCTAT
ATCCAGCAGCTTAAGAACCCGTTGGAGTTTAACCAGCAGCACCAATACCAATAGTTTAGCCGGTT
GGTCCAGCAGTGGATTCGGTTCCAGACTCATAGCCAGCATCTGAGCTAGTTTCTCCAGATCCAGC
AGAAGAACCAGTTGACTTCATTTACCCGGTGAAAGCAACAGCTGGGGCATATAAAGCAACGGAGA
CATGGGCTAAGGAGGAGGGAGCAGCTAAGGCAGAGGTCGATCCACCAGCAGATGATCCCGTTTAA
TAATCTGTTGATTCAGTTGTTTTTTTCTCTGGGTGAAGCACCGGTAACAGTAGTTGTTTACCCAT
ACTTTCCCTTCGCTCTTGTGTTTCTGTCCTTGTTGTAAGTGTAATCCGTGTTTCAGTGCTCTTCC
GAGATGATAACCGCTCGAAATGCACGGTGCAGCTAGGTAATAGGC
Right flanking sequence: Indices 479919 -- 480418
ATAGGCTGCTCCCTAATGGATTAGCCTCGCTCATGGGTGTTGCTCCTTATTTTGGCTGGTGTGAG
TAAGCCGAGGTCTCGGTGTCGCTCCTGCGCGGTGCTACACCTCTCTTTGCTAGCTCTTGTTCCTC
CGTAAAATCTAACTCTCTTTTCTCTTGCCTACTTGCTAGACACATTTACTGATACAACCAATGTG
TAATATTTCCGCTCATTTCGACCTTTCCCTTGACCGCTTTCAAGGTAAGGACAAATTCATATAGA
AAGTGAATATATCATATAGCCGGGGCAGAGCCGTGACTATTGGTCACTCCTATACCATTGAGAGA
GCCCATCTCTACACATATAGGTATGTATCGTGGCTTGTGCAGATTCCGATAGCATATTATAAACT
AAGTCACTAAGCCAAACCAATAAGAGTCTGGTTCACTCGTTATGATTCACCTATAGCTACTAGAT
GCGGGGTAGGACAGACAGCCAAAGTAAGAACAGAAAAAAACCACT
Found at i:485663 original size:17 final size:17
Alignment explanation
Indices: 485641--485675 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
485631 ATCCCGCCCG
485641 AGCATTAAATACTTCCA
1 AGCATTAAATACTTCCA
485658 AGCATTAAATACTTCCA
1 AGCATTAAATACTTCCA
485675 A
1 A
485676 AAGCAAGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29
Consensus pattern (17 bp):
AGCATTAAATACTTCCA
Left flanking sequence: Indices 485141 -- 485640
TTCTAACCAAAGGAAGGGGTTTAACAGTAGTTCCGGTAATAAGTGGTCGACCAAACAAAGAAAGG
TATCATACTTGTAATAAAGGTCTAATACTTGTTGTTATCCAACCAAAGGGAGGTATAAGGGGTGA
CCGAACGAAGAAGAAGAAAGGGATACTGGGTGTTATCCGAACAAAGGGAAGGATCCATAGTAGTT
CTTGGAAGAATAAATAGTTATCGTTCCTCGTGTCCTCGTACCCCGTCTCGATCATGGGGAATAAT
AAAATAGTCCCGTTAAACAAGGGCAAAGGAAATAGTTCTCGTACATCGTTCACAGCTAATCACTT
AAATAAAAATATCGAACCAATCGTCATCACTGGAATAAAAACCTTCACTCCCTCACCTACAAATA
GAAATAGTCTGGTGGAAGTAAAGCAATAGTCCCGTCAAAGCTGTTACCGCACACTAACACTTGAC
TGATTAACCAATACTGATTCTAAACTGAACCTTACATCCCGCCCG
Right flanking sequence: Indices 485676 -- 486175
AAGCAAGCCATCTATCCCTCGCTCAAGCCATCTATCCGTCCAATACCTCCCTCGATCAAGCAATC
TAAAAAGCAATAGCAATAGATCTATCCCTCGCCCTCACCCCCAAGCAAGCTATTGAGTGGAGTGA
TAACCCCCTACCCCCAAGCAATTGAGTAATAACCATAGGGAAAGCAATCTAAACAGCCAAGCTAG
ATAGACTTATTCTACTGACCCTGACCCCCTAGCAAGCAATTGAGTGGGGTAATAACCATTGATAA
CCCCAACCCCCAAGCAAGTGAATGAGTGGAGTGATCACCATTACCCCATACCCCCGAGCAAGCAT
TGAAAGCAAAGCTAGCTAACCCCATACCCCCAAGCAATGAAACAATTGGGATAGGGCAAGCAACC
TCACCTACCGATACTTACTGATTCACTGAAACTGAACCTTGAGTCCCTCCCTTACGGTCGGAGGG
AATAAGTAAAGGTGAATAGCTATCACTGGAACTAGAACTGTCACT
Found at i:493024 original size:14 final size:14
Alignment explanation
Indices: 493005--493042 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
492995 TCCCAAGTCT
493005 GTATTTCCCCCACC
1 GTATTTCCCCCACC
* *
493019 GTATTTCCCCTACT
1 GTATTTCCCCCACC
493033 GTATTTCCCC
1 GTATTTCCCC
493043 AAAGTATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.13, C:0.42, G:0.08, T:0.37
Consensus pattern (14 bp):
GTATTTCCCCCACC
Left flanking sequence: Indices 492505 -- 493004
TCCCCTTGATTGAAAAGATGGATATTGATTCGATATAGAATGTAGTTCTCCCTGCGGGTGGGTAG
CTCCCCCAAGGAATGTCGTTCTCCCAATGTGGCTCCCCCAATGCGGATAGCTTTCCCAATGTATT
TCCCCCAAGAGGACCTGTAATCAATCTATTTCCTGCTAGTAAGAAGATAATATGAAGAGTAGAGC
TCATATGGCCCAAAGGGAAAGTGAGGGCTGCTCCCCTGATCTTCTGCTTGACCGGCCCAATAAGA
AATCTCTTTCCAGCTAGTCATAAGATAAGCCAACTGCTCCCTGGTTCCCCCCTTTGGGAGGTTAG
GGGGGCCAGCTGCTCCCTTGTTCCCCCCGGTCTAGGAGGGCCGGTTGCTGTAATCAATCTATTTC
CTGCTGGCTAGTCATAAGATAAGAACTAGCCCCACAAGAAGATAACCAGCGCAAGCCCATTGATA
ATAAATCTCTTTAGCAGATTAGGTAAATAAGTCTGTCCCAAGTCT
Right flanking sequence: Indices 493043 -- 493542
AAAGTATGTGAGTGTTCCACTTACATTTACCCACAACTAGCCTTTTTACCGGCCCACAGATAATA
TCTTTCCTTTTTATGGCCCACCTTTTTATGGCAGAGTTCTCCAGGTAAGGCCGGAGTGTTACGGT
ATAGGTATCTCACCAAGGAAGGGAACAGATAACATCTCCTTTAGCCCAAAGGAAAGTGAGGACAG
TCAAATCCCTATATCCAGTCTACGGCTCCCTGATGACAGTAGAAAAAAGAAATCCTTCCCCGTAT
TTCTATGTTCTGTCTGCAAGTTTCTATGTTCTGTCTAGGTGCTCCCTTCATAACGGATAAGAAGG
ATACTGAATCAGAGTTAATAGCCCAGCAGAGTGAATTGATTCATTGAGCTATTGGGGTGAGGAAA
TCCAACTCCCTCGCCCTTATATTGGGGTATGAGCTTCGGTTGGCGAGAAGAAATCTGCCCTTGAA
CAACGAACAAATATGCCTATTTTATTGGGTTATCCCCATCCGTTT
Found at i:493709 original size:15 final size:15
Alignment explanation
Indices: 493689--493724 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
493679 TCGATGGTAA
493689 ATTATGTTTCTGTAC
1 ATTATGTTTCTGTAC
493704 ATTATGTTTCTGTAC
1 ATTATGTTTCTGTAC
493719 ATTATG
1 ATTATG
493725 CTGATAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.11, G:0.14, T:0.53
Consensus pattern (15 bp):
ATTATGTTTCTGTAC
Left flanking sequence: Indices 493189 -- 493688
GGAAGGGAACAGATAACATCTCCTTTAGCCCAAAGGAAAGTGAGGACAGTCAAATCCCTATATCC
AGTCTACGGCTCCCTGATGACAGTAGAAAAAAGAAATCCTTCCCCGTATTTCTATGTTCTGTCTG
CAAGTTTCTATGTTCTGTCTAGGTGCTCCCTTCATAACGGATAAGAAGGATACTGAATCAGAGTT
AATAGCCCAGCAGAGTGAATTGATTCATTGAGCTATTGGGGTGAGGAAATCCAACTCCCTCGCCC
TTATATTGGGGTATGAGCTTCGGTTGGCGAGAAGAAATCTGCCCTTGAACAACGAACAAATATGC
CTATTTTATTGGGTTATCCCCATCCGTTTTCAGGGTGTCCATCTGTACTATTTTTTTAGGTACTT
CAATTTCCCCACAACTTTCCCATCCAATGAACGCTTTTACCGGCCCAATAAGAAATCTCTTTCCT
GCTAGTCATAAAGAAACGGGCTTGTAAATTATGCTTCGATGGTAA
Right flanking sequence: Indices 493725 -- 494224
CTGATAATAGTTAAGGATACGAATTGGATAAGAAGGAGACAACTTAGGTAAATAAGAAATTTAGG
TAAATTAGGCATCTTAGGTAAATACAACGGACTTATACTACGGGCTTATACGTATTATCAGTCCA
CAGATAATATCTTTTCACTCACGGTATCACGGTATCACTATCTTCTGGCTATTTTGCATAGATAA
AAGGTAACTAAACCATGCCTAAATAGGTCTCTGGTGGAAGTGGAAGAAGACCTCATAATACTGGC
TCATCATACCTCATCATAAGACAGGCTGGCTCATCTGCACATTCCTCGTACCACTTTCCTCTCAG
TAGCAAATCGAGTCAGCAGCAAATCCTTTCCTTATCGAGGAGAACACCTCTCACGCTTCTACGCT
TCCACCTTCAGAGGGAATTGAACTATTTAGCGACGTGTGGTTCAGAGTGAATGAAGAATGCCTAA
TGAGTTCCTTGATGGCGAGTGCTAAGGAAGGCAACTGAGAACATA
Found at i:493808 original size:18 final size:18
Alignment explanation
Indices: 493767--493813 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
493757 AAGGAGACAA
493767 CTTAGGTAAATAAGAAAT
1 CTTAGGTAAATAAGAAAT
* **
493785 -TTAGGTAAATTAGGCAT
1 CTTAGGTAAATAAGAAAT
493802 CTTAGGTAAATA
1 CTTAGGTAAATA
493814 CAACGGACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.43, C:0.06, G:0.19, T:0.32
Consensus pattern (18 bp):
CTTAGGTAAATAAGAAAT
Left flanking sequence: Indices 493267 -- 493766
CTGATGACAGTAGAAAAAAGAAATCCTTCCCCGTATTTCTATGTTCTGTCTGCAAGTTTCTATGT
TCTGTCTAGGTGCTCCCTTCATAACGGATAAGAAGGATACTGAATCAGAGTTAATAGCCCAGCAG
AGTGAATTGATTCATTGAGCTATTGGGGTGAGGAAATCCAACTCCCTCGCCCTTATATTGGGGTA
TGAGCTTCGGTTGGCGAGAAGAAATCTGCCCTTGAACAACGAACAAATATGCCTATTTTATTGGG
TTATCCCCATCCGTTTTCAGGGTGTCCATCTGTACTATTTTTTTAGGTACTTCAATTTCCCCACA
ACTTTCCCATCCAATGAACGCTTTTACCGGCCCAATAAGAAATCTCTTTCCTGCTAGTCATAAAG
AAACGGGCTTGTAAATTATGCTTCGATGGTAAATTATGTTTCTGTACATTATGTTTCTGTACATT
ATGCTGATAATAGTTAAGGATACGAATTGGATAAGAAGGAGACAA
Right flanking sequence: Indices 493814 -- 494313
CAACGGACTTATACTACGGGCTTATACGTATTATCAGTCCACAGATAATATCTTTTCACTCACGG
TATCACGGTATCACTATCTTCTGGCTATTTTGCATAGATAAAAGGTAACTAAACCATGCCTAAAT
AGGTCTCTGGTGGAAGTGGAAGAAGACCTCATAATACTGGCTCATCATACCTCATCATAAGACAG
GCTGGCTCATCTGCACATTCCTCGTACCACTTTCCTCTCAGTAGCAAATCGAGTCAGCAGCAAAT
CCTTTCCTTATCGAGGAGAACACCTCTCACGCTTCTACGCTTCCACCTTCAGAGGGAATTGAACT
ATTTAGCGACGTGTGGTTCAGAGTGAATGAAGAATGCCTAATGAGTTCCTTGATGGCGAGTGCTA
AGGAAGGCAACTGAGAACATATCCATGGTGGAAAGTCTCCTAGCTCATGGTGAAGGATGATGGTC
TCCCGTAAAGATAAGAAAAGAGTAGAGCTCATATGGCCCTTTAGC
Found at i:497472 original size:8 final size:8
Alignment explanation
Indices: 497459--497511 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
497449 CCTATCTATC
497459 TATAGATA
1 TATAGATA
*
497467 TCTAGATA
1 TATAGATA
497475 TATAGATA
1 TATAGATA
**
497483 TATCTATA
1 TATAGATA
*
497491 GATAGATA
1 TATAGATA
*
497499 GATAGATA
1 TATAGATA
*
497507 GATAG
1 TATAG
497512 TAGCGAGGGG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.45, C:0.04, G:0.17, T:0.34
Consensus pattern (8 bp):
TATAGATA
Left flanking sequence: Indices 496959 -- 497458
GGTACTATCCAGGTGCGAATAACCCCCGGGGGTGGCTGCAATGGGCAGCAGAGATGCCACTCACC
GGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCGAGGGATCACCCAACGAATGGACTCTACA
GCGACAGGAACCATGCTTTTGGATGGAGAAGTGGGGACCTTAATGATGAATAGTAATAGGCCGAA
TCTGAACTGCGGGAATATCTATTCGGAACCTAGGGGACTAATATTAATAGGGGCCAGGAATGTAT
GGGTGACAGATCGGCCATAAATGTACTCCGGAATATACACCAGGGCAACAAATGTCGGTCGACGA
TGCCGCCCGTTTCCATTTCGTGGAAGTGCTCGGCAGAGGAAGGGGCTGTAGGTGATGATGCCCCT
ATTGATGAAGGAATCGCTGGGCACCTATTTATTTTTATCTTATTTATTTCATAGGCAGCGGGTCC
TGGTCAAATCCGGTGGGTGCCGCAAGGTTATACCCCCTATCTATC
Right flanking sequence: Indices 497512 -- 498011
TAGCGAGGGGTAGGTATCGGTCCGATAGGGATAACCTTAATTCTTAATCAAAAGGACTTGTCTGG
AGATATCTGTCTCACTAAGCGGTAACCTCGCTACCTCACCCCCTAACGACTGCTCTATCTTAGTG
TTCGTTCGCGCGACAAGGATACAATAAAGAGCATCGCTCGACCGACGTTAAATTTATAGTATTAG
GAGAGGACACAACACCTTAGAACTTTCACATTTTAACCTCCTTTCAGGACCTTTGAATGAAGGGA
AGCCCCGTAGCGAAATCCCTTTCCTTTGCGTAGCTCAGGTCAGGTTATCCTTACCTTTGCGTTCA
GGCTTTGAGGGGAATAAATATAGGGTGAGTAAGCGAACTCTCGACCGGGGGGAGAGGGACCTTAC
CTTCGCTATGCGTAAGACCTAGACCACCGTAGCGAAGGGAAGGCAAGATCTATAGTTACAGAATT
ACGGCACTATGGATCGATCTACGTTGCCGTAACAAATTCACAAAT
Found at i:497497 original size:4 final size:4
Alignment explanation
Indices: 497469--497511 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
497459 TATAGATATC
* * **
497469 TAGA TATA TAGA TATA TCTA TAGA TAGA TAGA TAGA TAGA TAG
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAG
497512 TAGCGAGGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.47, C:0.02, G:0.19, T:0.33
Consensus pattern (4 bp):
TAGA
Left flanking sequence: Indices 496969 -- 497468
AGGTGCGAATAACCCCCGGGGGTGGCTGCAATGGGCAGCAGAGATGCCACTCACCGGCCTAAACG
ACGAGCAAACACTCGAACGTGAGAGCGAGGGATCACCCAACGAATGGACTCTACAGCGACAGGAA
CCATGCTTTTGGATGGAGAAGTGGGGACCTTAATGATGAATAGTAATAGGCCGAATCTGAACTGC
GGGAATATCTATTCGGAACCTAGGGGACTAATATTAATAGGGGCCAGGAATGTATGGGTGACAGA
TCGGCCATAAATGTACTCCGGAATATACACCAGGGCAACAAATGTCGGTCGACGATGCCGCCCGT
TTCCATTTCGTGGAAGTGCTCGGCAGAGGAAGGGGCTGTAGGTGATGATGCCCCTATTGATGAAG
GAATCGCTGGGCACCTATTTATTTTTATCTTATTTATTTCATAGGCAGCGGGTCCTGGTCAAATC
CGGTGGGTGCCGCAAGGTTATACCCCCTATCTATCTATAGATATC
Right flanking sequence: Indices 497512 -- 498011
TAGCGAGGGGTAGGTATCGGTCCGATAGGGATAACCTTAATTCTTAATCAAAAGGACTTGTCTGG
AGATATCTGTCTCACTAAGCGGTAACCTCGCTACCTCACCCCCTAACGACTGCTCTATCTTAGTG
TTCGTTCGCGCGACAAGGATACAATAAAGAGCATCGCTCGACCGACGTTAAATTTATAGTATTAG
GAGAGGACACAACACCTTAGAACTTTCACATTTTAACCTCCTTTCAGGACCTTTGAATGAAGGGA
AGCCCCGTAGCGAAATCCCTTTCCTTTGCGTAGCTCAGGTCAGGTTATCCTTACCTTTGCGTTCA
GGCTTTGAGGGGAATAAATATAGGGTGAGTAAGCGAACTCTCGACCGGGGGGAGAGGGACCTTAC
CTTCGCTATGCGTAAGACCTAGACCACCGTAGCGAAGGGAAGGCAAGATCTATAGTTACAGAATT
ACGGCACTATGGATCGATCTACGTTGCCGTAACAAATTCACAAAT
Found at i:497500 original size:28 final size:28
Alignment explanation
Indices: 497455--497510 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
497445 ACCCCCTATC
** *
497455 TATCTATAGATATCTAGATATATAGATA
1 TATCTATAGATAGATAGATAGATAGATA
497483 TATCTATAGATAGATAGATAGATAGATA
1 TATCTATAGATAGATAGATAGATAGATA
497511 GTAGCGAGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (28 bp):
TATCTATAGATAGATAGATAGATAGATA
Left flanking sequence: Indices 496955 -- 497454
TCCTGGTACTATCCAGGTGCGAATAACCCCCGGGGGTGGCTGCAATGGGCAGCAGAGATGCCACT
CACCGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCGAGGGATCACCCAACGAATGGACTC
TACAGCGACAGGAACCATGCTTTTGGATGGAGAAGTGGGGACCTTAATGATGAATAGTAATAGGC
CGAATCTGAACTGCGGGAATATCTATTCGGAACCTAGGGGACTAATATTAATAGGGGCCAGGAAT
GTATGGGTGACAGATCGGCCATAAATGTACTCCGGAATATACACCAGGGCAACAAATGTCGGTCG
ACGATGCCGCCCGTTTCCATTTCGTGGAAGTGCTCGGCAGAGGAAGGGGCTGTAGGTGATGATGC
CCCTATTGATGAAGGAATCGCTGGGCACCTATTTATTTTTATCTTATTTATTTCATAGGCAGCGG
GTCCTGGTCAAATCCGGTGGGTGCCGCAAGGTTATACCCCCTATC
Right flanking sequence: Indices 497511 -- 498010
GTAGCGAGGGGTAGGTATCGGTCCGATAGGGATAACCTTAATTCTTAATCAAAAGGACTTGTCTG
GAGATATCTGTCTCACTAAGCGGTAACCTCGCTACCTCACCCCCTAACGACTGCTCTATCTTAGT
GTTCGTTCGCGCGACAAGGATACAATAAAGAGCATCGCTCGACCGACGTTAAATTTATAGTATTA
GGAGAGGACACAACACCTTAGAACTTTCACATTTTAACCTCCTTTCAGGACCTTTGAATGAAGGG
AAGCCCCGTAGCGAAATCCCTTTCCTTTGCGTAGCTCAGGTCAGGTTATCCTTACCTTTGCGTTC
AGGCTTTGAGGGGAATAAATATAGGGTGAGTAAGCGAACTCTCGACCGGGGGGAGAGGGACCTTA
CCTTCGCTATGCGTAAGACCTAGACCACCGTAGCGAAGGGAAGGCAAGATCTATAGTTACAGAAT
TACGGCACTATGGATCGATCTACGTTGCCGTAACAAATTCACAAA
Found at i:500264 original size:27 final size:27
Alignment explanation
Indices: 500222--500273 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
500212 GGTAATTCGC
*
500222 GCTATCCCTTTACAAGCCCAAAACCGA
1 GCTATCCCCTTACAAGCCCAAAACCGA
*
500249 GCTATCCCCTTCCAAGCCCAAAACC
1 GCTATCCCCTTACAAGCCCAAAACC
500274 AGAACAGGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.42, G:0.10, T:0.17
Consensus pattern (27 bp):
GCTATCCCCTTACAAGCCCAAAACCGA
Left flanking sequence: Indices 499722 -- 500221
GAGGCTATAACAAGGCTTTCCGAGGTGCTTGACCGGGCGCAGCTTGGGGTTTCCCGCCCAAGGGG
AACTGGTCATCCTGAAAACGGTGCCCGCTCGCTACGCTAATAGGGTAGGTAGAAAGGGGGGGGGC
GGCTTCGTTATCGAGAGGGTTCCTTTCCCCCCTTTCTATAGCTTAAAAAGAGCATTCACGGCATT
CGAGGAACCGATGATGCTTCATTTTCACCATTGTGTCGGAATGCAGCAGATGGATAGCCGGGGAA
GAAATGTTTCCAAAGGCGAAAGGGCAACATAGAGAAGAGATAGACCTAAAGTGATCCATGGATCT
CCGAGCGCCACGAAACCGTATCCGAGCTGGCCAGCTTCAGTCAGGATTTAGCGGACTTAAACAAT
ATCGGCTGCTAAATATGATATGGAGCCAACCATGACGATTGGTACTAATTTTAGGTGGGGGTTCC
TTAATCCCGTATTCTTTGCAGGAAAATTGAATGCGGGTAATTCGC
Right flanking sequence: Indices 500274 -- 500773
AGAACAGGCTCCTGTCATCGTTCCACCCCAGCCGGCTCCTTGGGGTGATTCCGCACCAACACTCA
GCCAAGACTATAAGCGCGTCTGCCTGCAGGAGAAGAGTAGTTCCCCAATCCCACCTATCCCCTGG
AAGGCAAGGGGAGGAAGGAGTAGTTACCCCCTGTGGTAGCCTGTCCTTCCTTTCCTTCCCGGATT
ATCTCCCTTAGTTAATATCCATCCCACCGCTTGCTCCTTGCTTCCCACGGCACCTTATAGCTACG
ATTATCACAGTGACCTTCTAGCTAGGAATTTAGATCTATCTGCTTGGGTCACTAGCTCCTTCGTT
CACTAGCTCCTTCCATAACTAGCAACGAATAAAGATCTCCCAATAGCTCCGAATAATGTGACCTT
ATAGCACAGTAGAATCCCCTTAGGATCGACCACAGGGGTTAACTAGGGGTTGCAAGAGAGTGATG
GGCCTTATTGAATCTGCTTGTCTATGGCTCTGAGTGTTTGCTCAG
Found at i:501524 original size:15 final size:15
Alignment explanation
Indices: 501504--501532 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
501494 TAATATAGAG
501504 ATCCTATGAATATGC
1 ATCCTATGAATATGC
501519 ATCCTATGAATATG
1 ATCCTATGAATATG
501533 AATAATTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (15 bp):
ATCCTATGAATATGC
Left flanking sequence: Indices 501004 -- 501503
AGCGGTAGCGAGTGAAGAGCGCTCTCCCCAGGCTAATCTGTCCCTCCTTTGCTTCCCGGAATCTC
TACCTGAGTGAATAAGTATTCTCTACCTTCCCCTTTAATTGCTAAGTAATCCCTTTATTTTATAA
AGCACATCCTGTCCTTTAATCAAGCACATCCTTCTCTGCCCAGGAATCTCTCCCCCTCTGCCCAG
GAATCTCTACCTTAGTGAATATGCTTAAAGATAACGGTTGATGAGGCAGTGTGAATAAAGAATGT
GCTTCCTTGCATCACCGAGTAAATTAAGCTCAGGCCACCCCCGCCCTTTGCCGAGAGACCTATGA
ATATTGATCCTTGGTTAATGAGGATAATCTACCTTAGTGAATAAGGAATCTCTCGCTTGTCCCAA
GGAATATCTCCCTTAGTAAAGAAGGAATCTATCCCTTGCACCCTTGCTTGTTGGAGCGGTAGCGA
GTCAATGGGAGTATAGGGTAATAAGGAGGCTAGGATAATATAGAG
Right flanking sequence: Indices 501533 -- 502032
AATAATTGATCTCCTTATCCCCTTCCTTCTGTGCCAATCTCCTTTTGTATCCCCTTAATGAAGTG
GGCACAAAAGGCCTCCATGAAGTGGGTAGCAGTAGGTAGAGTAGGAATGAGAATCCCCGTCATAC
CAGCAGGCAGCCTTCCTTATCCTTATAGGTAGGAGTAGGGCGGTTCCTCTCCCTCTCCCTTATGG
TCGGGCGAGCGGCTCTACAACTCGCCCCTCTTTATGCTATCTCTAGTTACCGACATGATACGAGT
CATTAAAGAGATCCGTCGTAAAATAAGAGACTTGGGCCATAACTACTTATTTCCTTGGCTTGGCC
GGAGATCTTGTTCGTGATCCATAGATAGATCATCTTTTGTACCATCTCATTTATCACTCCGTACG
TGGCTTTGAATGGGGGGTCTATACCATATGTATGTGAATCGAGAGCGTAGACATGGTATAGCTTG
ATTGGTGGGAGCATCGCACAACAACAACTTATTTCAGGCATCCAT
Found at i:511991 original size:24 final size:27
Alignment explanation
Indices: 511933--511992 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
511923 TTTGCTAGTT
511933 GGAATGCTGCGCTAGTTCGACTGCTTATG
1 GGAATGCTGCGCTAGTTCGACTG--TATG
*
511962 GAAATGCTGC-C-AGTTCGACTG-ATG
1 GGAATGCTGCGCTAGTTCGACTGTATG
511986 GGAATGC
1 GGAATGC
511993 CCGTGTTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 9 0.31
27 10 0.34
28 1 0.03
29 9 0.31
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.27
Consensus pattern (27 bp):
GGAATGCTGCGCTAGTTCGACTGTATG
Left flanking sequence: Indices 511433 -- 511932
AAATTCCAGTGGGCATACCGGTTTATTTATTGGACTAGCCAGATTATCCTAGCAAGCAGCCGCCC
GCCATGGTTAACAGCACTCTCGTCTGGGAGTTATCTCTCAGGTCTGGATGGAACGGGGACTTTTA
TCGTGGTTCTGTTGGTAACTTGGGGACCATCTCCTTCTCATCCTCTGGTCCAGTGGTGAAGTGGT
CCTTTTCTCTCGCTGATGAAGTGGGCAAGGGCATCCCTGTTATCATAGGTAAACATTATAAAAGG
GCATGGTAAATAAAAAGAAAATCCATATCGGGTGGCTATGTTGGGTGGCCCCAAGGAAGGAAAGA
TAAGGGATTGTAAATAGTGGTTACCCTAACAAGCATTCCTGGCTGATGATGCATAAGTAAGGTCT
TCTATAGGTGGATAGGTAGGTTGGTAGCGGGTCCTAAAATGAGGAAATAAGTAGGGTTGGCTATT
CCTAGAATGTAGTTCTAAGATCATACCTCTCTACCTTTGCTAGTT
Right flanking sequence: Indices 511993 -- 512492
CCGTGTTTGAATGCCCCAACTGATGATGCTGGGAATCCCGTGTCCAACTGATGATGGAAATGAAT
GCCCGTGTTCAAATGCTGCTGGCTTTTATATATCTAAAGGTTTTTCAATTGAGAAAGGGTAGGTA
TATCGTGGCTTGCTTATATATGTGTTGCTTCCTGGTAGGGTGATAGATGGCCCCAGAGGTGTTGT
ATGCTAAGGTGTACCAAGTTACACGTGTTGCTGGCTGGTTTAAGTGACTAGAGCTGTTGGATGCA
AAGATGTGCTGCTTCCCCGTTTACCGCTTGCCCTCCTTGTTCGTGGTGCTTGATCGCTAACGCTT
GTCGTGGAAGGAGAGATTAAATCGGCTGACCCTTGACTTAACGGAAACAAGTTGTTCTTACGCCC
CGATCCCGATCCCGAACCCGAGCCAGATACCGATATAGAGACAGAGACAGAGCCCGAACCAGAGC
CCGAACCCGCTACCCCAACACCTACTGATACTGCCCGCTACGGAG
Found at i:512445 original size:12 final size:12
Alignment explanation
Indices: 512430--512454 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
512420 GAGACAGAGA
512430 CAGAGCCCGAAC
1 CAGAGCCCGAAC
512442 CAGAGCCCGAAC
1 CAGAGCCCGAAC
512454 C
1 C
512455 CGCTACCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.44, G:0.24, T:0.00
Consensus pattern (12 bp):
CAGAGCCCGAAC
Left flanking sequence: Indices 511930 -- 512429
GTTGGAATGCTGCGCTAGTTCGACTGCTTATGGAAATGCTGCCAGTTCGACTGATGGGAATGCCC
GTGTTTGAATGCCCCAACTGATGATGCTGGGAATCCCGTGTCCAACTGATGATGGAAATGAATGC
CCGTGTTCAAATGCTGCTGGCTTTTATATATCTAAAGGTTTTTCAATTGAGAAAGGGTAGGTATA
TCGTGGCTTGCTTATATATGTGTTGCTTCCTGGTAGGGTGATAGATGGCCCCAGAGGTGTTGTAT
GCTAAGGTGTACCAAGTTACACGTGTTGCTGGCTGGTTTAAGTGACTAGAGCTGTTGGATGCAAA
GATGTGCTGCTTCCCCGTTTACCGCTTGCCCTCCTTGTTCGTGGTGCTTGATCGCTAACGCTTGT
CGTGGAAGGAGAGATTAAATCGGCTGACCCTTGACTTAACGGAAACAAGTTGTTCTTACGCCCCG
ATCCCGATCCCGAACCCGAGCCAGATACCGATATAGAGACAGAGA
Right flanking sequence: Indices 512455 -- 512954
CGCTACCCCAACACCTACTGATACTGCCCGCTACGGAGGGAAGCAAGAGATAGCCATTCAGGAGG
CAAGGAAGGAATAGAGAGAGCCATCAAGCGGCAAGGGAAGCAAGAGCTAGCGCAGTCTGAGGTTC
AAGATATAAATGTAGGTGCTATGTGTGGGGTGATTCAGGTAGGTAGGTAGGAGGGGATGATCGAA
GTTGAAATGGTCTTGAAGCAGAGAGAGAGCATCTTTCAATGCTGTTGAGTCAACACCAAAACTCC
TCGATCGGCGGGACCTTCCGATCGCTCTCTGGTTGGTATAGAGTAGGAGGCCCTACACCAACGAA
GGCGCCCTTCAGCTCCCCATCCAGCAAGCTAACCAGCAAGCTCCCCAGCTCCTCCATCCATCCGG
CGATAAGAGTTGTTAATAGCTGTCCCTCCAAAGACCTAATGTTCTAGGACTGAAACATAGAAGAT
CTGGCAGGTTAAAAAAGAAGGTTCTGATCGCCGTACTAAACTGAG
Found at i:513152 original size:17 final size:17
Alignment explanation
Indices: 513130--513187 Score: 98
Period size: 17 Copynumber: 3.4 Consensus size: 17
513120 AAATATGATG
513130 CTCCTTATCGGATTCTT
1 CTCCTTATCGGATTCTT
513147 CTCCTTATCGGATTCTT
1 CTCCTTATCGGATTCTT
* *
513164 CTCCTTATTGGGTTCTT
1 CTCCTTATCGGATTCTT
513181 CTCCTTA
1 CTCCTTA
513188 CCGGTATATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.10, C:0.29, G:0.12, T:0.48
Consensus pattern (17 bp):
CTCCTTATCGGATTCTT
Left flanking sequence: Indices 512630 -- 513129
GGTAGGAGGGGATGATCGAAGTTGAAATGGTCTTGAAGCAGAGAGAGAGCATCTTTCAATGCTGT
TGAGTCAACACCAAAACTCCTCGATCGGCGGGACCTTCCGATCGCTCTCTGGTTGGTATAGAGTA
GGAGGCCCTACACCAACGAAGGCGCCCTTCAGCTCCCCATCCAGCAAGCTAACCAGCAAGCTCCC
CAGCTCCTCCATCCATCCGGCGATAAGAGTTGTTAATAGCTGTCCCTCCAAAGACCTAATGTTCT
AGGACTGAAACATAGAAGATCTGGCAGGTTAAAAAAGAAGGTTCTGATCGCCGTACTAAACTGAG
ATTCAATCCTGGGTGAATAATAGGTTGGGCATAACTCCATCCGATGGTCCCTACTCAGAATAATT
CCTAAAGTGAGAATGTGTTTAGGAGGGATCACATTGTAGTGGAGGTTAGGCGGGACTACGGACGG
ATGATGTAGCCGTGTGAGGTGACCAATAGAGAAATAAATATGATG
Right flanking sequence: Indices 513188 -- 513687
CCGGTATATGTCACCAGAGGTGTTGTATGCAAAGGTGGACCGATAGAGAGAGGGAGAAATAGAAA
TAATATAATGTGTTGCTTGCCGGGTTCTTTCTTATCCTGCTGACCGGTATATGGAGACAGAGCGT
CCAGATGAAATGTTGTATCAAAGGTTTGCTGCTTGCCGGGTTCCCGCATTAAGGTACGCATTACC
GCTTGCCTCCTTGTTGGTGGTGGTGCTGGTTGATCGCTAACGCTTGCCTCCATGAAGGTGTTATA
ACGAAGCGAAAAAGCTCGATTATACGCCCCACATTCCCTCCGCAGTATCGCATTCAGTCAGCCCA
CCCACGAAACCAAATAGTCAAGCCTCCCCAAGATAAATCACGGAATGGCTCCCCTTTATATTTTG
GGGACTTGCTTCGGGAGAATCTCTTATGGGGATTCGATCCAACCGCAGATTACGGCTGACTTTGT
GTGAGCGGGCTTTTACTACGAGAGGAATGGGTCTCCCGATCAATC
Found at i:514113 original size:13 final size:13
Alignment explanation
Indices: 514082--514123 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
514072 TTTGCCAACC
*
514082 AACATCAAAATCG
1 AACATCAACATCG
**
514095 TTCATCAACATCG
1 AACATCAACATCG
514108 AACATCAACATCG
1 AACATCAACATCG
514121 AAC
1 AAC
514124 TGGACATGCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.45, C:0.29, G:0.07, T:0.19
Consensus pattern (13 bp):
AACATCAACATCG
Left flanking sequence: Indices 513582 -- 514081
CTTGCTTCGGGAGAATCTCTTATGGGGATTCGATCCAACCGCAGATTACGGCTGACTTTGTGTGA
GCGGGCTTTTACTACGAGAGGAATGGGTCTCCCGATCAATCTCAGTACATATGGCGTAAGACGAT
TTCACAGATCGAGGTCGTACTGGGAAAAGAAGTAAGTGCCAGTCATTCTTGATATATGTAATAAC
ACGCTTTTCGGTGTGAGTCGAAGGTCGTGAAAGCGTAGTAGCCTAGTAGTCTACTTGCACCGGAG
ACCCACTTCTACGAAGTACTTTGGGCGGCGCGTTTGAACTAAACAAGACACTGAATTCTACTTCG
ATTTTAGCCCGATCTTCCAGTCATTATATATGTAATTACGCTTTAGGCTCTCATAATCGATCGTA
TCATAATATCGTATAATATTGTATACACTCACTTACTGAAAAAGGCCAACTCTTCGTTTATTAAT
AAAGCATCCGCCCGTGTTCGAGCAGCTTCGTTTTCTTTGCCAACC
Right flanking sequence: Indices 514124 -- 514623
TGGACATGCATCATGTAACCTAACCTGCATTGTGTCACCTGCATCGTGTTCTAATGCATCGTGTA
ACCTCTCATCATTGGTAACCTCATCTTGTAACCTAATCTAACCTTATCGTATCGCGTTATCAACA
TCGTCATCGTGTAACATCTACGTGTCTTCTGTGAGTACTACTCTACTCTCTGTGTCTCTGAAGGA
GTGATCACCTCTGTAGGGTCCGTCCCCCTCTGTAGGACCCATTGGATTATTCCCATTGGATCACT
GTAGGAGTAAACCAATTGATTAGTCCCCTTGAATATTCCCCTTGTCTTTTTCCCATTGATTCCCC
ATTAAATCACAGGAGTATCGCCATCGCCATTGCTTATTCCCATTGGATCACCTGCGGATGATTAT
TCCCATTGGGTCATCGGAGTATCCTAGGGGAAGCAAGTGTAACAGAGCGAGTGGGATTATAGCGG
AATAGAGCCAGTGAAGCATCCGGGTAGAAAAGTGGATTAGAGCGT
Found at i:518610 original size:30 final size:30
Alignment explanation
Indices: 518574--518655 Score: 155
Period size: 30 Copynumber: 2.7 Consensus size: 30
518564 GCACAATGAA
518574 ATGAATGAATGAGGATCGCTACTTGCTCAC
1 ATGAATGAATGAGGATCGCTACTTGCTCAC
518604 ATGAATGAATGAGGATCGCTACTTGCTCAC
1 ATGAATGAATGAGGATCGCTACTTGCTCAC
*
518634 ATGAACGAATGAGGATCGCTAC
1 ATGAATGAATGAGGATCGCTAC
518656 CGCTAAATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (30 bp):
ATGAATGAATGAGGATCGCTACTTGCTCAC
Left flanking sequence: Indices 518074 -- 518573
CTCTGCTGTGGCCTCATCTGTGGGTGCTGCTGTGGGTGGTATCAGCTGTTCCAACTTACTTATGG
GTTAGGCTTGCTTCACGCATTGTGTTTCCGGCTTCTAAGCTGCTTCCTACAGGTGATTGAAAGTT
CTCTCGCCAAAAAACGATGACACCCCCTCTCTCTCTCCACTCCAACCGGAAAATCCGAAATCACC
GGAGACCGGGAGAACCGGACCGCCCAGATTCCCCCGCGCACGCTCCAAACCCAAAACCCCATGAC
GACGACAGCAGGCGCAACACAAAGAAAAAGAACGAAGAGAATGTATTATTACTATCCTTTGAATT
TTTACCCATGTTGACACCCATACACGGCGAGAGATGGAGGCACACAGTAAGTAAGCCGCCGCAGA
ACCAATAAAAACTGACTGGTTTATATTGACGACTGGTTGTTCTGACTCCGTTGTTCTTATAGACA
ACTCCCCTGGTTTATAAGGTAACGCTATAGGGAGGGCACAATGAA
Right flanking sequence: Indices 518656 -- 519155
CGCTAAATAAACATAGTCATTTCCTGTATCGACTCTTGGATCGACTGACTATTGGCAGACTGGCA
ATGACGGGTGGGGATGGGCTGTCGGTTCACAGACAGAGAAGTAATCCATCAGTTCCAAAACATCC
AAGAAAGCGTCGACCCCCGGCATCAACTCTAGGATTGACTAGCGGCTATCAACAAGGATCTCGTG
GCGACTGGCTCTAATGACCTTATTTCTATCACTGGCTATGACTGGCTATGATCCTATGCTATGAT
TGGCAGCTATTGATTGGCAGCTATGATTGGCAGCTATGATCAACTATGATCGGCAGCTATGTTAA
ACTATGATCGGCAGCTATGTTAAACTATGACTGGGCTATGTTGGCCTAAATTCTAATAGCTATTT
GTGTACGATATTCTTTTACTACAGTTACTAAGGATTTTTATATTGATGCTTATTTATATACGTCT
ATACGTCGATTTACAATTTGTTGAGGAGGGAGCATAGTCAATGTT
Found at i:518931 original size:14 final size:13
Alignment explanation
Indices: 518908--518976 Score: 90
Period size: 13 Copynumber: 5.5 Consensus size: 13
518898 ATGATCCTAT
518908 GCTATGATTGGCA
1 GCTATGATTGGCA
518921 GCTATTGATTGGCA
1 GCTA-TGATTGGCA
518935 GCTATGATTGGCA
1 GCTATGATTGGCA
518948 GCTATGA-T--CA
1 GCTATGATTGGCA
* *
518958 ACTATGATCGGCA
1 GCTATGATTGGCA
518971 GCTATG
1 GCTATG
518977 TTAAACTATG
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
10 8 0.16
12 1 0.02
13 27 0.55
14 13 0.27
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (13 bp):
GCTATGATTGGCA
Left flanking sequence: Indices 518408 -- 518907
GTTGACACCCATACACGGCGAGAGATGGAGGCACACAGTAAGTAAGCCGCCGCAGAACCAATAAA
AACTGACTGGTTTATATTGACGACTGGTTGTTCTGACTCCGTTGTTCTTATAGACAACTCCCCTG
GTTTATAAGGTAACGCTATAGGGAGGGCACAATGAAATGAATGAATGAGGATCGCTACTTGCTCA
CATGAATGAATGAGGATCGCTACTTGCTCACATGAACGAATGAGGATCGCTACCGCTAAATAAAC
ATAGTCATTTCCTGTATCGACTCTTGGATCGACTGACTATTGGCAGACTGGCAATGACGGGTGGG
GATGGGCTGTCGGTTCACAGACAGAGAAGTAATCCATCAGTTCCAAAACATCCAAGAAAGCGTCG
ACCCCCGGCATCAACTCTAGGATTGACTAGCGGCTATCAACAAGGATCTCGTGGCGACTGGCTCT
AATGACCTTATTTCTATCACTGGCTATGACTGGCTATGATCCTAT
Right flanking sequence: Indices 518977 -- 519476
TTAAACTATGATCGGCAGCTATGTTAAACTATGACTGGGCTATGTTGGCCTAAATTCTAATAGCT
ATTTGTGTACGATATTCTTTTACTACAGTTACTAAGGATTTTTATATTGATGCTTATTTATATAC
GTCTATACGTCGATTTACAATTTGTTGAGGAGGGAGCATAGTCAATGTTTAGTCGCAGAGTCCGA
TCGATTTTAGGAGTTGGAGCAAGATGAGTGAGTTCAGATACCAAAGCCACAAACAAGCCGCCAAG
AGCTACACGAGCCAAGAGCCTTTAGCCTTCACAAACAAGGAGGCCAAAAATAACTAGAGCATAAC
TCAGGGAGGAGGGACTATAAAGAGCCATTTTACGCAGGTCAGGTAGTGATTTAACGCAGGTGTAC
CCATTCCCCTGTTTCATTGCAGATTTCCGGTCATATTTACTGTCATTGCCAGGAGATTACATTCC
CCATAGCAGTTTATAGAACCCTATACCCTATAACCTATACCCCAC
Found at i:518938 original size:27 final size:24
Alignment explanation
Indices: 518908--518998 Score: 87
Period size: 23 Copynumber: 3.8 Consensus size: 24
518898 ATGATCCTAT
518908 GCTATGATTGGCAGCTATTGATTGGCA
1 GCTATGATTGGCAGCTATTGA-T--CA
518935 GCTATGATTGGCAGCTA-TGATCA
1 GCTATGATTGGCAGCTATTGATCA
* * * *
518958 ACTATGATCGGCAGCTA-TGTTAA
1 GCTATGATTGGCAGCTATTGATCA
* *
518981 ACTATGATCGGCAGCTAT
1 GCTATGATTGGCAGCTAT
518999 GTTAAACTAT
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
23 38 0.64
25 1 0.02
26 3 0.05
27 17 0.29
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
GCTATGATTGGCAGCTATTGATCA
Left flanking sequence: Indices 518408 -- 518907
GTTGACACCCATACACGGCGAGAGATGGAGGCACACAGTAAGTAAGCCGCCGCAGAACCAATAAA
AACTGACTGGTTTATATTGACGACTGGTTGTTCTGACTCCGTTGTTCTTATAGACAACTCCCCTG
GTTTATAAGGTAACGCTATAGGGAGGGCACAATGAAATGAATGAATGAGGATCGCTACTTGCTCA
CATGAATGAATGAGGATCGCTACTTGCTCACATGAACGAATGAGGATCGCTACCGCTAAATAAAC
ATAGTCATTTCCTGTATCGACTCTTGGATCGACTGACTATTGGCAGACTGGCAATGACGGGTGGG
GATGGGCTGTCGGTTCACAGACAGAGAAGTAATCCATCAGTTCCAAAACATCCAAGAAAGCGTCG
ACCCCCGGCATCAACTCTAGGATTGACTAGCGGCTATCAACAAGGATCTCGTGGCGACTGGCTCT
AATGACCTTATTTCTATCACTGGCTATGACTGGCTATGATCCTAT
Right flanking sequence: Indices 518999 -- 519498
GTTAAACTATGACTGGGCTATGTTGGCCTAAATTCTAATAGCTATTTGTGTACGATATTCTTTTA
CTACAGTTACTAAGGATTTTTATATTGATGCTTATTTATATACGTCTATACGTCGATTTACAATT
TGTTGAGGAGGGAGCATAGTCAATGTTTAGTCGCAGAGTCCGATCGATTTTAGGAGTTGGAGCAA
GATGAGTGAGTTCAGATACCAAAGCCACAAACAAGCCGCCAAGAGCTACACGAGCCAAGAGCCTT
TAGCCTTCACAAACAAGGAGGCCAAAAATAACTAGAGCATAACTCAGGGAGGAGGGACTATAAAG
AGCCATTTTACGCAGGTCAGGTAGTGATTTAACGCAGGTGTACCCATTCCCCTGTTTCATTGCAG
ATTTCCGGTCATATTTACTGTCATTGCCAGGAGATTACATTCCCCATAGCAGTTTATAGAACCCT
ATACCCTATAACCTATACCCCACATAGAAGAAGACCTAGACCCTC
Found at i:518962 original size:23 final size:23
Alignment explanation
Indices: 518936--519010 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
518926 TGATTGGCAG
* *
518936 CTATGATTGGCAGCTATGATCAA
1 CTATGATCGGCAGCTATGATAAA
*
518959 CTATGATCGGCAGCTATGTTAAA
1 CTATGATCGGCAGCTATGATAAA
*
518982 CTATGATCGGCAGCTATGTTAAA
1 CTATGATCGGCAGCTATGATAAA
519005 CTATGA
1 CTATGA
519011 CTGGGCTATG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (23 bp):
CTATGATCGGCAGCTATGATAAA
Left flanking sequence: Indices 518436 -- 518935
AGGCACACAGTAAGTAAGCCGCCGCAGAACCAATAAAAACTGACTGGTTTATATTGACGACTGGT
TGTTCTGACTCCGTTGTTCTTATAGACAACTCCCCTGGTTTATAAGGTAACGCTATAGGGAGGGC
ACAATGAAATGAATGAATGAGGATCGCTACTTGCTCACATGAATGAATGAGGATCGCTACTTGCT
CACATGAACGAATGAGGATCGCTACCGCTAAATAAACATAGTCATTTCCTGTATCGACTCTTGGA
TCGACTGACTATTGGCAGACTGGCAATGACGGGTGGGGATGGGCTGTCGGTTCACAGACAGAGAA
GTAATCCATCAGTTCCAAAACATCCAAGAAAGCGTCGACCCCCGGCATCAACTCTAGGATTGACT
AGCGGCTATCAACAAGGATCTCGTGGCGACTGGCTCTAATGACCTTATTTCTATCACTGGCTATG
ACTGGCTATGATCCTATGCTATGATTGGCAGCTATTGATTGGCAG
Right flanking sequence: Indices 519011 -- 519510
CTGGGCTATGTTGGCCTAAATTCTAATAGCTATTTGTGTACGATATTCTTTTACTACAGTTACTA
AGGATTTTTATATTGATGCTTATTTATATACGTCTATACGTCGATTTACAATTTGTTGAGGAGGG
AGCATAGTCAATGTTTAGTCGCAGAGTCCGATCGATTTTAGGAGTTGGAGCAAGATGAGTGAGTT
CAGATACCAAAGCCACAAACAAGCCGCCAAGAGCTACACGAGCCAAGAGCCTTTAGCCTTCACAA
ACAAGGAGGCCAAAAATAACTAGAGCATAACTCAGGGAGGAGGGACTATAAAGAGCCATTTTACG
CAGGTCAGGTAGTGATTTAACGCAGGTGTACCCATTCCCCTGTTTCATTGCAGATTTCCGGTCAT
ATTTACTGTCATTGCCAGGAGATTACATTCCCCATAGCAGTTTATAGAACCCTATACCCTATAAC
CTATACCCCACATAGAAGAAGACCTAGACCCTCGACCTATAACCT
Found at i:522206 original size:16 final size:16
Alignment explanation
Indices: 522185--522226 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
522175 GTCAGTCAGT
*
522185 GCCAGCCAGTTGGTTG
1 GCCAGCCAGTTAGTTG
*
522201 GCCAGCCAGTTAGTTT
1 GCCAGCCAGTTAGTTG
522217 GCCAGCCAGT
1 GCCAGCCAGT
522227 CTGTCTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (16 bp):
GCCAGCCAGTTAGTTG
Left flanking sequence: Indices 521685 -- 522184
TAGCCAGCTGATCATAGCCGATAGCCGATCATAGTCGATCACATAGTCAGAAGAAGGTCATTGCC
AGCCCGTCATTGTAGCGATAGTCAATCATTGTCAGCCGATCATAGCTTGCTTTGCTACGCTTGGC
TACCGAGGGGCTAGAAACAGTCATTCCTAGAAGCTCTTGCCCTCTTATTTAAAGGTACGGCCTGC
TCTACGGAAGTGAGGTTGCAGGTACTGGAAAGTCAACTGTATTCAACTGCTTCTCTAGTCTTTGC
TCTTGGTGTTGCTTCTTCTACTGAATCTTCTACTTAATCTACTCAATCTACTGAACCAACTGCAA
GGATTGGGGAAGAAATAGAAAGCGTAACGTCTTGCAAGCCGGGGAAATAAGTCGAGGTAAGATGA
AAGAGAAGATAGGTGGTTCGCAGAGGGAAACCTGTGGCTACCTTGTTACGACTTCACCCCACCGT
AACGCGCTATATTGCTTCTGATCTAGGTTGGCTAGGTCAGTCAGT
Right flanking sequence: Indices 522227 -- 522726
CTGTCTTATTTTCTACCGGGCAGCCGAATCTCAGAACTGGACGAAGGAAGCTTGGTCATTACCTG
AAGTCAAGCAATAAAGATCGGGAGATTGATTGATTGACTGAAAGGGACGCTAACGCTATAGGTAT
TCCGCTCCCTCAAGAAATCCATCCCCTTTCAGGGTCAGTACCCCTTTCAGGGGGCAGGGACGCTA
ACGCTAGGCATCCCTCCCCCCGAAGGGAACCGAAGGGGACAAGCGAAGCGATACCCGAGCCTCTT
GCCAGAGGCGAAGGGACAGATCCCTTCTCCTTAGTGAACGAAGCAAGCTACAGGATCCATTGCCG
TCTTAGCTACATGCTTATGCTTATGCCTTTAGGGGTATGAGGAAGGAGCTACGCTGCTCAAGTTT
GAAAGTCATAAGGCAAGCATAATATCATATATAATGAGATATATCTTTGTATACGATATTATTCT
ATTAGGGATCGATTATGAAAGAAAGTATCAGGTAGACACTAGATA
Found at i:529172 original size:31 final size:30
Alignment explanation
Indices: 529137--529194 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
529127 TCCCCAATTC
529137 TTGTTCACCCCGGATGATCGTGTTGGGTTAA
1 TTGTT-ACCCCGGATGATCGTGTTGGGTTAA
* *
529168 TTGTTACCTCGTATGATCGTGTTGGGT
1 TTGTTACCCCGGATGATCGTGTTGGGT
529195 GAGCAACAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.14, C:0.17, G:0.29, T:0.40
Consensus pattern (30 bp):
TTGTTACCCCGGATGATCGTGTTGGGTTAA
Left flanking sequence: Indices 528637 -- 529136
TCTCCAAGTGGGCCCTCTTGGCCACCCACGACCCTGGCTTTTTGGGGAATCCTGCTCCTGTGTCG
CTTGTAGCTCGGCGGTCCACCGGGTTTTTGTCTCCAGTTCCGAGTGTATTCTTGGATAGTTATAG
CGGCCCATAGGCGCAAGATGTACCTTGTGGGGGCGGCCGAAACCTGGACATAGTCCTTTCAGACA
GTGGCCGTTTAGTCCATGGTCCATTGGATGTTCGGTGCAAGGCCAAAAATTGGAACACACTGCCC
GAAACGTTCCCGTCCTTCGCTTTAGGGCCTGTCCCTCAGTGTGGTCAGTACTGAATACTGTCGGG
CAGCAAAGCTTACACCTGTTAACTTATTGCGATGGTTCACCAGGGCCTCTTTCCTCCTCCCTTTT
CTGCTCACTCGTGAATCAGGGGCTGCCGGACCCCCCCTACAAAGGGGGAGAGAGTCGACTGAGCA
TCTCAGCCATTGGCGGGAATTTCGCCCGCATCCGATCCCCAATTC
Right flanking sequence: Indices 529195 -- 529694
GAGCAACAGCCGCTTCGTCACAGTACTTACTTATGGGCTAACGGGTCACACTTTGGCCAAGTATC
CTACAAAAGGACTCCCGAAAGCCAGAAAGATTGAAGGAATGGCCTGCGGAATGGGCGCATCATGA
CATCGTAAGATGTCTCGCCCGAATGGATTAGTTGGTGCTGGAAATGTCGGAAAAAGCGAACGGAA
AGAGTGATAAGGAGTGAAAGAGACAGAGACACTTCCCAACCAGAAAGCGAAGTTACCACTGATGG
TATATTTTGTGTAAGCGAGCTCTGAGATAACATCTTTGGGATAAAATCCAGTTGGAAAAGGAAAT
CCAATTAGAGATAGGCTGCCTATGGGCATCATGGCATAGGTAAAAGGTAACGAGGAAGCAAGCCC
CCCCATCTTGCGCGTATCTTGCTCATCCGACATGGCATGAATCACTGGACCTGCACTCAAGAATA
GTAATGCTTTGAAAAAAGCGTGATTCATTGAATGAGAGACGCTAA
Found at i:535202 original size:29 final size:29
Alignment explanation
Indices: 535169--535226 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
535159 CATCCATCAG
535169 GGCCCGTTGTTTCTTTCATCCTGAGCACC
1 GGCCCGTTGTTTCTTTCATCCTGAGCACC
*
535198 GGCCCGTTGTTTCTTTCATTCTGAGCACC
1 GGCCCGTTGTTTCTTTCATCCTGAGCACC
535227 CGGAGAATCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.10, C:0.33, G:0.21, T:0.36
Consensus pattern (29 bp):
GGCCCGTTGTTTCTTTCATCCTGAGCACC
Left flanking sequence: Indices 534669 -- 535168
GATTGATGAGACCCTACCAATCCTCTATCCAATAAGATAAGAAGCCCCTGTTGCTTACAACATCG
GATTTAAGGCCGGATGCTCACTGAGACAGGGTTCTCTTCACTTCACTTAAAAGGAAGGCAGGGGG
GATAAGGGGGGGGTGCCTTACCTTATCTAGTTTGTGATCCGTTGATCTATGAACCGGGACATTTC
CATTGATCTCTGAACCCATTTCCCATTTCCATTGATCTCCCATTTCCATGGAATAGATAGGGAAG
CCGTCTCCGAGCATGATTGATCTAAAGTTTTTCTTTCCCGACGAATAGGGAGTAGGGGGGGGGAA
TGAAACCCTAAAGAATAATCATCTCTGCTTTCAACTCCTACTTTCTTTGGGGATAGAATAGAGAT
TTCCCTTTCTTATCTTAGGTTCGGCTATTCTTCCATACCGACTTAGCTGCCCGGCACTTCACCTC
ACCAGGGAGGGATAGATCGGACAACCGGTACACTCCATCCATCAG
Right flanking sequence: Indices 535227 -- 535726
CGGAGAATCCCAGCATTTTCGTCTAAATGACACCGACCTTTAATCTGCTTAATATTGGTCCCCAC
TTTCCCTCCCCCCTAGATTGGAAATGGCATGGCATTGAATGAAGATTCTGGTCTTTTTTTACGGG
CCTTTCCCCTCGATCTACCTCGGGCCGCATGCACACTCCCGACTTCATTCAATAGTATAGAAAGA
AGGATTCGTACTTTCGAAGTATGCTTCCGGGTACCGAAGACTATAACCACTAACCACTTGGCTAT
ACGCTTTTCTTCGCAGCGTCTCCTTTGCGGCTTAGACCAAGTTACCTTTCCGAATCGAAATTGGG
CCGATAATATACTTATTCCCTATTTATTTCTTGTTGGGCGGGAGGCACGGACAATTCTTATTGCA
AGCAAGCAGCTATGGCGTAACCTATTCACTCACCTACTACAGGCAAGGCATCTCGCTCGGCCCGA
GAAAGCGAGAGAGACTAATATGACACATGCAAGTGGTTAATATTC
Found at i:538839 original size:13 final size:13
Alignment explanation
Indices: 538821--538861 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
538811 GTATGGCTCT
538821 CTGTATAAAATGG
1 CTGTATAAAATGG
538834 CTGTATCAAAA-GG
1 CTGTAT-AAAATGG
*
538847 CTGTATCAAATGG
1 CTGTATAAAATGG
538860 CT
1 CT
538862 ACGCCTTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 3 0.12
13 18 0.72
14 4 0.16
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (13 bp):
CTGTATAAAATGG
Left flanking sequence: Indices 538321 -- 538820
TCTTTAGGGAGGGAAGAATAGTCGAATAAGGAATAACCAACATGCCTGCATGCAGGCAGGCATGG
CATTCGTTCTTCGCTGCTTTTGAGTTTCCCTCTCTCTTCCTTGTGATGGGAGTATGGCCAAGCGG
CCTGGCCTGATGGTACAACGGCTCTGGGGCGACCGGGGGTTCGAGAGAAAGGAAAGAAAGTAGGT
TCAACGAGAAAGCAGAGCAGAGGTGGTTCCACCAGAGAAAGCTAAAGCTCTGGTTCGTAAATTCC
CTCCTTCTTACTTAATATATCTATAAAGTATATGAAGGGTTATAGGCGGTTGAAGAACAAGGCCC
TGGTACTTCCAGGCTTGGTGTCTGCTGGCTGGCCCACTTAATACTTAATACTTAATATATGGCGT
TCCAGTAAGGCAAGGTACGGTTTGGGCTTCTCTTCCACGGTTTGTCCAGTAAGGCCTTGAAAGGA
GGGTAGGTCTTATCTTCTCTTTCCTTACTTACTCTGTATGGCTCT
Right flanking sequence: Indices 538862 -- 539361
ACGCCTTACCTTACTTATCTTTCCTTACTTAATGAATTGAATTAAGGGGCCTTTCTAATATTAAG
TTAAGGGGACTTCGTTCCATTCCAGCCAGTAAGGCTTTGAATAAAAGGCCCTATCGGGTCGGGTA
GGTAGGGGTAAATCGTGTAAGGCCTTGACCTTTAAAGGTCCTTGCCCGATGCGGACAAGCGGCTA
CGCTCCTTTCATTTCTTCAAGTAAGGGTAAGGAAGGTCAATACTTCGAAGACTTGTCCTGATTAA
CCGCTTCAGCAGCCCCGTAATCTTTACTTCGGACAACAGGCCTTGAAAGGAAATATTCTCATATT
CTGGGCCCTTGGCCTTAATATTTCATGAAGAAGGCCAATAAGTATAAGTGGTGTTTAGTTTTTGT
CATATTTTTTCATACGAACAAAGATAAGGCGGCTATAAATCCCAACCCACCCGACGGTCCTGACC
GAAAGGTCTTGAGCTCAGGATTTGAGGGGAAGAAATAGATAGAGG
Found at i:540681 original size:14 final size:14
Alignment explanation
Indices: 540658--540693 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
540648 ACATCTTCGA
*
540658 GGGAAAGGGATACC
1 GGGAAAGGGATAAC
*
540672 GGGGAAGGGATAAC
1 GGGAAAGGGATAAC
540686 GGGAAAGG
1 GGGAAAGG
540694 AAGCAGCACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.08, G:0.50, T:0.06
Consensus pattern (14 bp):
GGGAAAGGGATAAC
Left flanking sequence: Indices 540158 -- 540657
ATGAGCAAATTAGTTGATGTTGTACCCGCAAAGCATGGGAAGTGCCGAACATTGGGAACTACCCG
GGAAAGAGTTAGAAACAAGAACGGGAAGAAGCGAAAACCACTTGGGTGAAAAAATTGATTGTATC
TCGCCCTTCGTTCTCCGTAGCAACTGGGGATCGAAGGGCACCAAATTTGATAACTTATGGAGGGA
AAGACGGAGTAGGAGCATGCTACTGGAGACGTAGTAACACATGTTGAAGAGGCCTCCGTCGATCG
TGTACGAACGGAATACGGGTCCAAAGGCAGGGTCGGAGAGGGTTTAGCTGATGGAAATATTGACT
CTTCCGGGAACCAATGACGCGTAAACCATGTCGAACTAAGACCAATAAATATCCGAACGGAACGA
ATTCTAGCTTCTCCCGGAGGAGTTTTCGATGCAAAATTCGTATGATACGGATGAAAGATTCAGAC
AATATTCGCTCGTCCGTCCAGCGCAACGGGCGCCAACATCTTCGA
Right flanking sequence: Indices 540694 -- 541193
AAGCAGCACTTTAGCAAGTGGGTGCTTCAGAATTTGTGTAGGGATAGTCTCAGGATAGTGAGTGA
CAGAATTTGCCTTCCCTACTTATATTTATTCCCTTCAAAGAGCATAGCGAAGCTTACCTGAGCAT
GAAGGGGTTCGGGTCTTACCTGAGCCCTTATATATGAATATATAACCGGGAAGAGATTGGTGAAA
ATGAGGTTCGGGAAGACTTATATTTATTCCCCTCAAAGGGCTCTGCGAAGTCCTGGTCTTACCTG
CCTGCCTGAGTGAGCTAGCTCTGCAAGGTCCTGGCCCTTGATTTCTTCCCCTTGGTCGAGGGGAA
GGAATCAATATAGGGCCTTTCAATAAGGACCTTACTCTCTTAAGGTAAAGTGGGAAATCACGGAA
AGCTGTGAGCCCATACGGGGAATCTTAAAATAGAACACATTTTTGGGTGACTTGTGAGGGAAAAT
GGAAAACCAAAGATAGAGCGTAGATTTCGCGAACTTCTTCCATTT
Found at i:541236 original size:22 final size:23
Alignment explanation
Indices: 541204--541250 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
541194 CTTCCAGTCA
541204 TTCTTGATATATGTAATTACGCT
1 TTCTTGATATATGTAATTACGCT
541227 TTCTT-ATATATGTAATTACGCT
1 TTCTTGATATATGTAATTACGCT
541249 TT
1 TT
541251 ATTTTATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.26, C:0.13, G:0.11, T:0.51
Consensus pattern (23 bp):
TTCTTGATATATGTAATTACGCT
Left flanking sequence: Indices 540704 -- 541203
TTAGCAAGTGGGTGCTTCAGAATTTGTGTAGGGATAGTCTCAGGATAGTGAGTGACAGAATTTGC
CTTCCCTACTTATATTTATTCCCTTCAAAGAGCATAGCGAAGCTTACCTGAGCATGAAGGGGTTC
GGGTCTTACCTGAGCCCTTATATATGAATATATAACCGGGAAGAGATTGGTGAAAATGAGGTTCG
GGAAGACTTATATTTATTCCCCTCAAAGGGCTCTGCGAAGTCCTGGTCTTACCTGCCTGCCTGAG
TGAGCTAGCTCTGCAAGGTCCTGGCCCTTGATTTCTTCCCCTTGGTCGAGGGGAAGGAATCAATA
TAGGGCCTTTCAATAAGGACCTTACTCTCTTAAGGTAAAGTGGGAAATCACGGAAAGCTGTGAGC
CCATACGGGGAATCTTAAAATAGAACACATTTTTGGGTGACTTGTGAGGGAAAATGGAAAACCAA
AGATAGAGCGTAGATTTCGCGAACTTCTTCCATTTCTTCCAGTCA
Right flanking sequence: Indices 541251 -- 541750
ATTTTATTCTCTCTCTAGTTACCGAAAGGCCCTAAGTTACTTATTTAGTGAGGTACGAAGTCGCT
CACCTGACCTCGGGAAGGTGAGGGGCCCAAAAATAGAGGGTCTGAAGACGCGAAGACCGACTCTT
GGGTGCCCCCATACAACAAGTAACTTAGAAACCGAACGGCTCGACCAACGGGAGAGGGACGAACG
CTCGCCCTTACTTCCGACGAGGGCGAGGGATTTATAATACTTGCTCAACGGTAGGAGGGCAAGCA
ATCCTTCCTTACGCGATATTCTCTTTTATTTGGGTTATTTATTTGGTGAGGGGCTTATGGTCGAG
CGTTTCAAAACCCTCGACTTACTCGATCTTCTCTTTCACTTACGCGACTTACGCGATCTTCTCTT
TCCCTTCCCTTACTTACCTAGGAAAGCCTCCCGTAAGAGTAGGGGCAGGCAAGGAAGGGCTACTT
GAGCTTGAGCTGGGGCTCGTATTGCATTCTTCTTATTAATTCAGA
Found at i:547578 original size:15 final size:16
Alignment explanation
Indices: 547549--547580 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
547539 CAGATAGTTA
547549 TTAGCGTATATAGTGC
1 TTAGCGTATATAGTGC
547565 TTAGCGTA-ATAGTGC
1 TTAGCGTATATAGTGC
547580 T
1 T
547581 AGGGGACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (16 bp):
TTAGCGTATATAGTGC
Left flanking sequence: Indices 547049 -- 547548
AGCGTACCCCTGTTCCCGGTAGGGGCTTTTCCCCTGTTAACATAACCATCAATAGTGCAATCCCG
GCCACGGAGACTGGCTTCCCGGCCAAGGAGAATAGACACGGCCAAGGATACCGGTTAGTGCACGT
TCATCCTGACCTCTGCATCCCGACCCATCTCCGTAGACCAACCCGGCCAAGACGTGTTAGTGCCT
CGGCCAACTGGTGTTGGTGCCTGGAGACTCACGAACTGGTGATGGGAGTTAACCCCTGGCCTTAC
TCCTGGAGAGCAATGGATATGCCCCGGCTTCCGGCTTCCTTCCATCCAAGGAGAATAGCTCTCTT
CTATCCTTCTTACTGGGGCCTATAGCGAGATAGGGGTTATAGAGGCTCTTCCTTCCATCTATCTC
TTTTTCTTCCCACTGGAGACTAGCTCTTTCTCTTATTCCTCTAGAGTAGTGATCTAGTGATCTGC
TGTTATCCCGCTTCCTTAGAGTAGTGATTAGTACCCAGATAGTTA
Right flanking sequence: Indices 547581 -- 548080
AGGGGACTTTTCCTTCTTTTCTTCTATAATCCTTTATCTAACCTGGTGCTAGTGCCTGGTATATC
TAATTTCGGGCAAGAAATATTCAAATGGCAATTTCCGGTAAGCAAATGAAACGAAAAGATGCCCA
GATGAACTCCACCCCAGCACACCTGATGCTTGTCCCTCACAAACCTCAGACCCTGCATCTTCCTG
GCTTGGCACCATTCAACCCCTATTTTCTATGGATCCCCTTGCCTTCGTAAGATAAGAGAAATCAA
AAAGAAGAGCTTGGAAGAGTTCTATGGCTACAAAGGAACCCTCACATCCCATTGCAAGTCCTAGG
CTACTATAAATTTATGATGCTTACACTAGATTATATACAATGACCACTTTAGAGCCTTTAGCCTA
GAATCCATATTCTGAGATGAGAGCAGAAGACTGGAGGGTTGCGCAAGTCAGGTTTCAAACTTCTT
ATTGCTCAATTACCCGCTTTCGATAACATCCATATGGCAAAGAGC
Found at i:548981 original size:14 final size:14
Alignment explanation
Indices: 548962--548997 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
548952 ATGAAAAGCA
548962 AGTAAAGATCTGCC
1 AGTAAAGATCTGCC
548976 AGTAAAGATCTGCC
1 AGTAAAGATCTGCC
*
548990 GGTAAAGA
1 AGTAAAGA
548998 ACTCAAAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.19
Consensus pattern (14 bp):
AGTAAAGATCTGCC
Left flanking sequence: Indices 548462 -- 548961
CTGCCTGTTGGCTGCCATGCTTTTGTGCGCCCCTCTCCCTTCCTTTGGTCGGTCGAGCGGGTTCG
TACCTTACCCCCTCTAAGAAGACATTCATTATCAATCAATAAATAAAACGCAGTCCTTACTCTAA
GGTTCCTATTCTAACGCTGGGCAAAACATCTATCTCTCCTAGTCGCTCCTTCCGGCAAGTTCTCT
ATCCGCCCCTCCTTTCTCTCCCAACAATGTATGCAAATAAATATTTAAAGAAATCACTTGGCTTC
ACCACAGCTACCTACCCTGCGAGGTTGTTTCTATCCGCCTCGACTTGATTTCCTTCAGACCTCCT
CATCCGTCCCGTTTCGTTTATTCTCCTAGCCTGCCCGTTTTTTGGATCAACTAGAGTTTCATGGA
CCAGCAGCCTGCAAGTAACGCGATGCCAGCCAGTAAAAAACTCAAAGCAAAAAAGCAAGTAAGCC
AGGCCGTTTCTTTCTTGGACCAGCCAGCAGCAATAATGAAAAGCA
Right flanking sequence: Indices 548998 -- 549497
ACTCAAAGCAAGCAGCCGGGTTCCCGCTCAGCCTAAAAGCTTCCATCTTAATCCATCCGTACCAT
GCAGCCCAGACCAGCGAGCAGCAATCCCCATATCCTTCCTAGCTGTGTCCTCCCCTATCTGGGTG
AAAAGTGTTCAAATACCGTATTTCTTAAAGTCAAATGTAACTTTGTCAGTTGGGGTGTTTATTCA
TATCATATCAGGTTTCAAAGAAGCGTTTGCAGAGAGCAAAAATTGAATATAGATTATTTCTTGTT
AAATCGCCTAGGCCTCTAACTGCTCTATCTGCCTCACGTTCTCTCTTTCCAGCTCCTCCAACTCC
TCATTGATTTCCTACGCTCGCTACTCAACATGTCCAAAGCTCCTCAAATGGGGAATCAACGTATA
TAGACGCCCCTAGGTCTATTTGTTGGAAGGTAAAGAGCAAGGTCGAGGCATAGAAGAAGGTATGC
GAGGTAGGTATCACTGTGTCACTCTGGGGGCAATGTTTGAATGAC
Found at i:566809 original size:30 final size:29
Alignment explanation
Indices: 566767--566825 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 29
566757 TCCTTGCCCG
566767 GCTTCCTGAACACATATCCTCTCGGTGTT
1 GCTTCCTGAACACATATCCTCTCGGTGTT
566796 GCTTCCTTGAACACATATCCTCTCGGTGTT
1 GCTTCC-TGAACACATATCCTCTCGGTGTT
566826 CCTTAGCTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 6 0.21
30 23 0.79
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.36
Consensus pattern (29 bp):
GCTTCCTGAACACATATCCTCTCGGTGTT
Left flanking sequence: Indices 566267 -- 566766
TAAACCTCTACGATTCTACGGTCTCACCTCAGGCAGGTAGCTAGAGTTCCTGGGATTCTCATCTT
TCACCCGGGACTCGTCCTAGCTAGTTGGTTTGCTGCGTGTCTTCCTACTACGCTTCTTATTGGGA
TGGATCCGACCTTGAAACGTTTAAGGCTGGTACTTCTCCCTCCCGTGCTTGGTTCGGGCGGGCTG
GTCATCCCTTTCGCTAGTTCGTTGGTGCCCTGCTGTCAACCGCACCTCGTCCTGCTCATGCGCTG
GGCAACCTACTATCCTAAGCCTTAGGCTAGCAAGCATACATACTGAGCTAGCTAGTCCTTGCGCT
GATCATACCTCCCCCGTACTTCTTTTTGTGGGCTGATATTCCGTTTGGTGGGCCCATATTCTGTA
TCCTGTTCCTCGTGCTTGTTCTTCAGATAGAACCCCTACTTCGAGCCATTTCACTGGATATATTC
CCGAGAATTCCTTCCTAGAGAGCGGAAGTCCTTCTTCCTTGCCCG
Right flanking sequence: Indices 566826 -- 567325
CCTTAGCTGGTTGGTTGTTGGCCTCTTGAACCCTTATTGCGCTTGGCCTTCCTGGGTTGCGCAGG
AACCTCTCGCTCGGACAATCGTTCTAGATCTATATTTGACAATTACGTTGGTTGTCTGCCCCCAC
AACATCTCGATTGATGCACCGCTTAACACCTTGAATTGAGGGGGCCCGGACCCTTCCTTCCCCTG
TACTTATAGTTTCTTACCCCGGACTGATTGGTTATACTTATGCATGCTCGTACACCACTCATGCT
TCTAATGCTTCGCGGGATTGGTTACCGAACGAGTTAGCCTACCCCTTGACCCCTTTGTCGGGCCT
TGCTTCGTTGGGCCGCCTAACCCCTTTAGCCAGTGTGGGCCTGAGCCTAACTTGTTGGGACCCTT
ACCCTTCAACCACCCCCTCAACTCAAAGAGCTAGATCGGGGGAATAAAATTGGGGCAACTCGACC
TGGGATAACCTTCTTAACTTTCTTTCGGGAGTATGGGTGGGGAGT
Found at i:568604 original size:47 final size:48
Alignment explanation
Indices: 568550--568646 Score: 119
Period size: 47 Copynumber: 2.0 Consensus size: 48
568540 TGTCAAAGTC
* *
568550 AAAGTGTAT-TAATTCCGCGATAGGCTAT-TTGTCTAAGTAAGAGA-ATG
1 AAAGTGTATGT-ATTCCGCGAGAAGCTATCTT-TCTAAGTAAGAGATATG
**
568597 AAAGTGTATGTATTTTGCGAGAAGCTATCTTTCTAAGTAAGAGATATG
1 AAAGTGTATGTATTCCGCGAGAAGCTATCTTTCTAAGTAAGAGATATG
568645 AA
1 AA
568647 TGTAGCAAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
47 35 0.81
48 8 0.19
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (48 bp):
AAAGTGTATGTATTCCGCGAGAAGCTATCTTTCTAAGTAAGAGATATG
Left flanking sequence: Indices 568050 -- 568549
ACTTAACACCTGGGACTTGGTTTTCCACTTGTGGGATTAGAAGCGGCCCATAAAATGAAACATCA
AGGTGAAGTACCATCCAATGAACTTGAATTACAGGCAATCTCCCATACCCAAACATGAGGTACAA
CTAGCTTGGCTACCTTAGAACCTACACCCACTCACACTAGCATTCTATCACACATGCCTATAGGC
AATATATCACCTTCCATCTAGGTCATCTAGCATCCTTCCTTGGACCTGGAGAAGGAACATCCTCG
AAGCTCGGAAAAACTGAGTTTTTGCCATTTTGCCTATTGGGGGTGGGGGGACTGCTCTCGGAAAA
ACTGAGTCTTTTCTCTCTACAGCTGCTCTCGGAAAATAACCCAAATAGCGAGCGCTTTCATCATA
TAAATTGAAATCTAGATTCATTTTTTCTGCCTTGACTCACTTCCAATAGGCTCTATTTTTAAGTG
AAAACGAAACTGTATTAATTCCGCGATAAGTGATTTGTCAAAGTC
Right flanking sequence: Indices 568647 -- 569146
TGTAGCAAAGTCCGATCCCGATTGGAAGGAAAGAATGTGACAAGCCGAGGATCCTGATCCAGATA
AGGAGAAGAGAAGGCTGCCCATTCATTTCTTTGGCCTAATAACACCGCTACTCATTTATCCCGAT
GGATCCATTACCTACGAACCCCTCAACACAAGGGGTTTATATCTCTAAACCCGCACCTGATAAGG
ACCGGAGGCGCTCTCCTGAGGTACGAGGGTGAGGTTTTTTGAATTGATGGACCAACCCGACCTGC
TATTCGGGGTGAACACTTAGAATCAAGTTTGACCTCATCTGCAGAACAACTGGCGTTCCTGTTTC
CACCTGCCTTACTTATTGGAAGTGGAAGGAAGAACCTGCCTTAAATGCTGGAATGAATCAATTTG
GATAAAGAAAACAAAAAGTGAAATACCCCTGTGGAGTGGAGCCATATGCCTCCGAACCTCTCCAA
AAAAGGGTTCGCTCTATTAAACACGCGGTTGGGAGCGCTTTTGGG
Found at i:572390 original size:23 final size:23
Alignment explanation
Indices: 572326--572393 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
572316 CTACTCAGTG
* * * *
572326 CATGAACCTCCGGTCGGTACATT
1 CATGAAGCTCTGGTCGATCCATT
572349 CATGAAGCTCTGGTCGATCCATT
1 CATGAAGCTCTGGTCGATCCATT
572372 CATGAAGCTCTGGTCGATCCAT
1 CATGAAGCTCTGGTCGATCCAT
572394 GAAGCTATGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (23 bp):
CATGAAGCTCTGGTCGATCCATT
Left flanking sequence: Indices 571826 -- 572325
TTAGAGCATACTTACTAGTGGATTATACTTAATAGTGTAGAACATACAATAGTCCCAGTATACTC
AACTGTGGCTACTGCGCTATTCAACCGCTGGGCTATTCAACCCGGCTATTCGAATGCGCTAACTG
GACTTATCAACTTTGGTGTGGTTGGATACTTTCAGTGCCTAGAAGCTACGGTCAGTGCATGAACT
ATTGACAGTAAGTGCTAAATAGATGGCTCTATACTCATGGGATGCTCTATTCATGAAGCTCTACT
CATTGGATGCTCTGCTAAGTGCTTTAGCAGTAAGTGCATTAAGTCTAGTCCGTGCCCAGTAGTCA
TACAGGAGTTGATGCCAGGAATCGTGCTACTCAATCAGTCGATGCCAAGAGTCATAGTCGCCGGT
ACCAATAGTAGATGCCGCTAGTGGAGTCGATCCGCTACTCGATTCCAGTTGTCAGTCTGAGCTAG
AAAGTGCAGCAAGAAGCTCTAGTCACATAGAAGCTCTACTCAGTG
Right flanking sequence: Indices 572394 -- 572893
GAAGCTATGGTCGGCGCCAAGTAGTCGGTGCCGAGAGCCAATAGTCATTTTCCCTAGTCATTGTC
AGGAGTCAATGCTGGTACTTTATCCCAAGAGTTGATGCCAGTCATAGCCGGGCTGGACTTGGCTA
CTGGGTTAGTGGGCTTTCGTTGAACTGTGGACTAAACTGCGCTGTTGTAACATGGGGAACATCAT
TTCTTCTCTCGTGTGGTGTTTTCGTAAAGCCAGCGAGCAAGCAGCAATTCCATTCTCGTAGCTTT
TCCATCCCGCCTGTCTGTGCTAAACGTTGTGAGAAGGAATTCTTCAGTAATAAAAACCTTCCTTT
TTCAGTTCAGTGGGTCTGGTCGATGAAAAAGATCGTTTCCAGGATGCAAAAATGTAATGTAAATA
TAAAGGGGTTATCCCAGGACTGGCTTAAGCTTCCCCTTCTCCTCAAATTATTCCGCTGGACCCAC
CCAAAAATACCCAACTTGTTTTGAGAGGACTGAATGGGCTTAGAA
Found at i:572396 original size:19 final size:21
Alignment explanation
Indices: 572348--572406 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 21
572338 GTCGGTACAT
572348 TCATGAAGCTCTGGTCGATCC
1 TCATGAAGCTCTGGTCGATCC
572369 ATTCATGAAGCTCTGGTCGAT-C
1 --TCATGAAGCTCTGGTCGATCC
*
572391 -CATGAAGCTATGGTCG
1 TCATGAAGCTCTGGTCG
572407 GCGCCAAGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
19 15 0.43
22 1 0.03
23 19 0.54
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (21 bp):
TCATGAAGCTCTGGTCGATCC
Left flanking sequence: Indices 571848 -- 572347
TTATACTTAATAGTGTAGAACATACAATAGTCCCAGTATACTCAACTGTGGCTACTGCGCTATTC
AACCGCTGGGCTATTCAACCCGGCTATTCGAATGCGCTAACTGGACTTATCAACTTTGGTGTGGT
TGGATACTTTCAGTGCCTAGAAGCTACGGTCAGTGCATGAACTATTGACAGTAAGTGCTAAATAG
ATGGCTCTATACTCATGGGATGCTCTATTCATGAAGCTCTACTCATTGGATGCTCTGCTAAGTGC
TTTAGCAGTAAGTGCATTAAGTCTAGTCCGTGCCCAGTAGTCATACAGGAGTTGATGCCAGGAAT
CGTGCTACTCAATCAGTCGATGCCAAGAGTCATAGTCGCCGGTACCAATAGTAGATGCCGCTAGT
GGAGTCGATCCGCTACTCGATTCCAGTTGTCAGTCTGAGCTAGAAAGTGCAGCAAGAAGCTCTAG
TCACATAGAAGCTCTACTCAGTGCATGAACCTCCGGTCGGTACAT
Right flanking sequence: Indices 572407 -- 572906
GCGCCAAGTAGTCGGTGCCGAGAGCCAATAGTCATTTTCCCTAGTCATTGTCAGGAGTCAATGCT
GGTACTTTATCCCAAGAGTTGATGCCAGTCATAGCCGGGCTGGACTTGGCTACTGGGTTAGTGGG
CTTTCGTTGAACTGTGGACTAAACTGCGCTGTTGTAACATGGGGAACATCATTTCTTCTCTCGTG
TGGTGTTTTCGTAAAGCCAGCGAGCAAGCAGCAATTCCATTCTCGTAGCTTTTCCATCCCGCCTG
TCTGTGCTAAACGTTGTGAGAAGGAATTCTTCAGTAATAAAAACCTTCCTTTTTCAGTTCAGTGG
GTCTGGTCGATGAAAAAGATCGTTTCCAGGATGCAAAAATGTAATGTAAATATAAAGGGGTTATC
CCAGGACTGGCTTAAGCTTCCCCTTCTCCTCAAATTATTCCGCTGGACCCACCCAAAAATACCCA
ACTTGTTTTGAGAGGACTGAATGGGCTTAGAATAGGTTTTCTACC
Found at i:576119 original size:15 final size:15
Alignment explanation
Indices: 576099--576131 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
576089 AAGAGAAGTC
576099 CCCCTTAAATCCATA
1 CCCCTTAAATCCATA
*
576114 CCCCTTCAATCCATA
1 CCCCTTAAATCCATA
576129 CCC
1 CCC
576132 AAGAGAGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.48, G:0.00, T:0.24
Consensus pattern (15 bp):
CCCCTTAAATCCATA
Left flanking sequence: Indices 575599 -- 576098
GCTTGACTTATTCTGGGAAGAAAGGAAAGAGGAATTCATTTAGTCTTACGGGAAGGGATAAACGA
ACCAACAAGCCTGCAGACACCAGTCACCATAAAGCCATGTGCCTTTCACCAGGAAGAAGGATGGA
AAGAGGAGGGGAGCCGGTCCATACATATATGATCTAGCATATATACGTTTACCTTTTCCTTTGTA
ATTTGTATAGCCGACCAAGAGGAAGTAGAAAATCCCACCCAGCCAAGTTCCCGACAGACGAGGAG
ATATTGAGTTCACCCAACCAAGTAGACACGGATAGAGAAATGAATGCTGCTGCTGGCCGTATCGG
AACGGCCAGGGAGAGGTAAGACACTTACAGCTCATTCCCCTCCTTCCTACACCCATCCAAAGTAC
CCTTACTGCTAGATGAGAGAAGAAAAGTCCGCCAAGTTCGCGTAAAGCACCCGCCCAGTCCGATC
AGTACGCCCAGTACGCCAAGTCCGCCAGATGAGAAAAGAGAAGTC
Right flanking sequence: Indices 576132 -- 576631
AAGAGAGAAGTTTCCCATCATAGCTAGAGAGATGTACCCCATGCGACATAGAGTGAATGGCTAGA
CGTGTTGCTAGAGTGAGGTGACTAGCTCGTGGGTGGGAAAAGGGGACTATGTGCTGTGAACGACG
GCTATGTGCATGCTGTTAATGACGGCTAGGCGATACCTTCATACCAAGAGCGAGTTACTACTGCG
CATTATATATGATTCACCTGTTTAGGTTAATACGCCTTACATAGAAGAGATATCACACGCCATAG
ATAAAACACGCCATAGGTGGTATCACACGCCATAGATAACACATGCCATAAAGATTAGAGGTTTC
ACACGCCTTACGCAGAGAGACATTCAGAGAGGGGAGGGAGGTTGAGCCATCACTAGGAGCCATAC
AGGTAGGGAAGGGAGGGGGGTTAGGCTTGCCCAGAAAGTTCTTGATTGATAGCCACATGAGAGGG
GTGGTTCTGCCACATGTGAGGGGTGATCCCACGGACTAAAACCGT
Found at i:576439 original size:16 final size:16
Alignment explanation
Indices: 576374--576441 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 16
576364 TACATAGAAG
*
576374 AGATATCACACGCCAT
1 AGATAACACACGCCAT
*
576390 AGATAAAACACGCCAT
1 AGATAACACACGCCAT
* *
576406 AGGTGGTATCACACGCCAT
1 A---GATAACACACGCCAT
*
576425 AGATAACACATGCCAT
1 AGATAACACACGCCAT
576441 A
1 A
576442 AAGATTAGAG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
16 28 0.68
19 13 0.32
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.18
Consensus pattern (16 bp):
AGATAACACACGCCAT
Left flanking sequence: Indices 575874 -- 576373
AACCAAGTAGACACGGATAGAGAAATGAATGCTGCTGCTGGCCGTATCGGAACGGCCAGGGAGAG
GTAAGACACTTACAGCTCATTCCCCTCCTTCCTACACCCATCCAAAGTACCCTTACTGCTAGATG
AGAGAAGAAAAGTCCGCCAAGTTCGCGTAAAGCACCCGCCCAGTCCGATCAGTACGCCCAGTACG
CCAAGTCCGCCAGATGAGAAAAGAGAAGTCCCCCTTAAATCCATACCCCTTCAATCCATACCCAA
GAGAGAAGTTTCCCATCATAGCTAGAGAGATGTACCCCATGCGACATAGAGTGAATGGCTAGACG
TGTTGCTAGAGTGAGGTGACTAGCTCGTGGGTGGGAAAAGGGGACTATGTGCTGTGAACGACGGC
TATGTGCATGCTGTTAATGACGGCTAGGCGATACCTTCATACCAAGAGCGAGTTACTACTGCGCA
TTATATATGATTCACCTGTTTAGGTTAATACGCCTTACATAGAAG
Right flanking sequence: Indices 576442 -- 576941
AAGATTAGAGGTTTCACACGCCTTACGCAGAGAGACATTCAGAGAGGGGAGGGAGGTTGAGCCAT
CACTAGGAGCCATACAGGTAGGGAAGGGAGGGGGGTTAGGCTTGCCCAGAAAGTTCTTGATTGAT
AGCCACATGAGAGGGGTGGTTCTGCCACATGTGAGGGGTGATCCCACGGACTAAAACCGTACACA
TACACCAGTCAGAGACAGGAGACCTTGCCAGGAGACCTAGACCCTTTACCTAGACCTTTACTCTT
TTGCCAGTCACCAGATGCCTTTACCCTTCCGCCTATCACCTCTAGCCAAAGCCAGTCCAGCAAGA
AGTAGACGTCAGCAAATCAATCTTAGATATGCTGTTACTTACGTCGATTCAGCATTTGAGGAGCA
GAAGACAATTTTTTATGTTGAGGAGCTTATTGTTTTATAATTACGTATATAACGCAAGCTTAGAG
TTCTTCTCAGATATTTATTTTTCAATGGACTACCAGGCAGGCAGG
Found at i:577366 original size:25 final size:25
Alignment explanation
Indices: 577338--577390 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
577328 CGAGGTTAAT
*
577338 ATCTCACGTCCCAATGCAAGGTACA
1 ATCTCACGTCACAATGCAAGGTACA
* *
577363 ATCTCACGTCACAATTCGAGGTACA
1 ATCTCACGTCACAATGCAAGGTACA
577388 ATC
1 ATC
577391 CCCCTCCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (25 bp):
ATCTCACGTCACAATGCAAGGTACA
Left flanking sequence: Indices 576838 -- 577337
AATTTTTTATGTTGAGGAGCTTATTGTTTTATAATTACGTATATAACGCAAGCTTAGAGTTCTTC
TCAGATATTTATTTTTCAATGGACTACCAGGCAGGCAGGGCAGGCACAAAGTTAGGATGGTCCAG
ATATTCAAAATATTCTCATTCACTAGGGATCATGGGTTGGAATCATGGGTTGCGATCATCCGCTT
GGATACTCGGACTGGGATACTCTCCTTGGATGGAAACAGTCATTGCTGCGAGGTCATTGATAGCC
GCCGAGCATAGCCGACATAGCCCACCCTTACAGCCAAGCATAGCCGAGCATAGCACCTGCCCACC
ATACAAGCAAGCCCTTTCCCCACACCACATAGCTGAGCATAGAAAGACAGACAGAAGGTCATTGC
TGATGGCCGATAGTCGCCAGGTAGGTGTTATCCAGGGTTAGATCCAAGTGTTTAGGCACTCGATG
CTTAGCTTTATACTTGAATCTAGTTAACTCCCCATCGAGGTTAAT
Right flanking sequence: Indices 577391 -- 577890
CCCCTCCATTTTCAATCGACCACCTCACTTACGCATACGGAACACACAACGTTCCTACATCGATT
TGACTTAAGGGATGAATCAACAAACAATGCTTACTTACAATGCGAGGATGAGGATCATACAACAG
ACACTTAGTTGCAGTCACGCTAATCAGGTACTGCCAGTAAGGGAAGGTGGGTGATGCTTTATAGT
TATCAATTGAGCGCCTACCAGATGCGGCGAAGGCACCAAGTTCGCTTGGAACAGATTTCACCAAA
CGCATTTGGATTTTCCATTTTGATAAATCTCATTTTTAGGGGCTCCAGGACACTTAGTGTCATCG
GGGCTACTAAAAATGCTTTATTATTAATGAAGATTGGCATTTACAGAAGTTTATCTATATTTCGC
GGGATGCCTTCGATTGCTGGGCCGGGCTACTCGACCGGACTGCTCGTTTGGCTACTCTGCTTGGC
TACTCTTCTCCACTTGGATGGGCGGGGATACTCAACTGGGGATAC
Found at i:577916 original size:13 final size:13
Alignment explanation
Indices: 577898--577941 Score: 88
Period size: 13 Copynumber: 3.4 Consensus size: 13
577888 TACTTGGCAG
577898 GGCTGGGCTTATA
1 GGCTGGGCTTATA
577911 GGCTGGGCTTATA
1 GGCTGGGCTTATA
577924 GGCTGGGCTTATA
1 GGCTGGGCTTATA
577937 GGCTG
1 GGCTG
577942 CTCAGCTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.14, C:0.16, G:0.41, T:0.30
Consensus pattern (13 bp):
GGCTGGGCTTATA
Left flanking sequence: Indices 577398 -- 577897
ATTTTCAATCGACCACCTCACTTACGCATACGGAACACACAACGTTCCTACATCGATTTGACTTA
AGGGATGAATCAACAAACAATGCTTACTTACAATGCGAGGATGAGGATCATACAACAGACACTTA
GTTGCAGTCACGCTAATCAGGTACTGCCAGTAAGGGAAGGTGGGTGATGCTTTATAGTTATCAAT
TGAGCGCCTACCAGATGCGGCGAAGGCACCAAGTTCGCTTGGAACAGATTTCACCAAACGCATTT
GGATTTTCCATTTTGATAAATCTCATTTTTAGGGGCTCCAGGACACTTAGTGTCATCGGGGCTAC
TAAAAATGCTTTATTATTAATGAAGATTGGCATTTACAGAAGTTTATCTATATTTCGCGGGATGC
CTTCGATTGCTGGGCCGGGCTACTCGACCGGACTGCTCGTTTGGCTACTCTGCTTGGCTACTCTT
CTCCACTTGGATGGGCGGGGATACTCAACTGGGGATACTTGGCAG
Right flanking sequence: Indices 577942 -- 578441
CTCAGCTATGATACCGGGCTGCTGGGCGGGAATACTCGACTGGACTACTCCGCTTGGATACCCAG
CTACTCAGCTTGGCTAATTGGATACTCTACTGCTGCTTGGCTCGGATACTACTCGACTGGACTAC
TCAACTGGGCTTACTCGGCCTGGGCTCATGGGATCCTGGGCTGCTGCAGACAGTCAGTGCCTAGA
AGATACGGCGGTCAGTGATAGAACTCTTCTCAGTCAGTTTGTTAATGAAGTCTACTCCATGGGAG
GAAGCTCTACTCATGCTCTACTCATCGAAACTCTACTCAGTGAGGGCATGAACCTCCGGTCGGTA
CAGGAATGAGGAAGCTCTAGTCAGCGATTTAAGCTATTGTAAATGCATGACGAAAGAACCTATGG
TTTGTGCAGCTAGTCAATGCTTTTCAATGCTGCTTGCCGATGCCTGTTTTCGACGCCAGAATAAA
GATGGCGGGCAGACGATGCAATTGCTTCGGAGCAATAGCGAAGTT
Found at i:578634 original size:34 final size:29
Alignment explanation
Indices: 578587--578647 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 29
578577 CGGTAAGACT
578587 GGCTTTTCACCCACTCCAAAGTCTGGAGGATA
1 GGCTTTTCACCCA--CC-AAGTCTGGAGGATA
578619 GGCTTTTAGCACCCACCAAGTCTGGAGGA
1 GGCTTTT--CACCCACCAAGTCTGGAGGA
578648 GGCAAGTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
31 12 0.44
32 9 0.33
34 6 0.22
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (29 bp):
GGCTTTTCACCCACCAAGTCTGGAGGATA
Left flanking sequence: Indices 578087 -- 578586
CGGCCTGGGCTCATGGGATCCTGGGCTGCTGCAGACAGTCAGTGCCTAGAAGATACGGCGGTCAG
TGATAGAACTCTTCTCAGTCAGTTTGTTAATGAAGTCTACTCCATGGGAGGAAGCTCTACTCATG
CTCTACTCATCGAAACTCTACTCAGTGAGGGCATGAACCTCCGGTCGGTACAGGAATGAGGAAGC
TCTAGTCAGCGATTTAAGCTATTGTAAATGCATGACGAAAGAACCTATGGTTTGTGCAGCTAGTC
AATGCTTTTCAATGCTGCTTGCCGATGCCTGTTTTCGACGCCAGAATAAAGATGGCGGGCAGACG
ATGCAATTGCTTCGGAGCAATAGCGAAGTTGCTAGCTCGCAATGGCCCAGCCAGCCAGCCAGGAA
ATGTATTTTGAAAATAAAGAATTATAAGAGGACATAACCCTAACGTATGAATATATAGATAACTG
TATGATCGGTCGAGTATGCCCCCGCGTATGTATATCGGTAAGACT
Right flanking sequence: Indices 578648 -- 579147
GGCAAGTAAATAGCACTTGAAGTTGACTCAGAAGCATTTGACCTAGTTACAGATTCACCAGCAGC
GAAGTAAGCAGTTTCTTAAGTTGCCTGAGTAGCAGTGACATTTGAACTGGGGGACCGAGTTTATG
AACCAGTCTCGGAAACAGAAGCAAGGAGGGTGGGAGCAGAACCAGATCCATAGGGGTATAGGCGG
ATAGAGCAGCGTTGGTGGCTAGAGCATAGGTAGGTGCAGTTGAAGCGCTTAATTCATAACCAATT
CTACGCGCGGTTCCTGATCTATACGCATTTCTTTTGGATCCTGGTTCAGAGCCACATGTTACCTT
TATTACAAGTACTGATCCCATTGATATTCCCATCATTACTATTATGTAACTACCATTGATTTAAG
TAGGTTAATTAGGGGCTTGATAGGTATAGTAAACCTTTAACCTGCACGCAGTAAGTCGTTCGGTG
GTAAGGAGAACGCATAACACGTGTGTCTAGCTTAGTCGGCGCAAA
Found at i:579604 original size:17 final size:17
Alignment explanation
Indices: 579582--579616 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
579572 TTTGTAGGTG
*
579582 GGTAAGGCATTGTCAGA
1 GGTAAGGCAATGTCAGA
579599 GGTAAGGCAATGTCAGA
1 GGTAAGGCAATGTCAGA
579616 G
1 G
579617 AAAAGGGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.37, T:0.20
Consensus pattern (17 bp):
GGTAAGGCAATGTCAGA
Left flanking sequence: Indices 579082 -- 579581
CACGCAGTAAGTCGTTCGGTGGTAAGGAGAACGCATAACACGTGTGTCTAGCTTAGTCGGCGCAA
AGTAAGCCTTGACCTTGCTTTACAGCCCTGAGCAATATAGAAACCAAAAAAGGAATTTTCATTAG
AAGGAATGATAAATTTGAATGATCAAAATTTGACCTAGGTATGATGAAGATAACCCACACCAAAT
CACAAATGCCCCCTCACACTAGGGGTACTCAAACAAAGATGGGGATTTAACACATCGATCTTACT
CGTCCCAAGCCAACTATTCAATTTGAGTATTAAGGAGAAGCACATTCAAGATATTAAGGCCATAG
TGGTGGCAAATTTAGACATGGTTTGGTAAAAAACTTAGATTTTAAGAAGAACAAGCTTCTTTTTA
CTATTCACAGGAAAACCCTCTTCCTTCTCATGGTCGGGAACCTTATTATCTTGCTGAGTCAGGTT
ATTTATAGAATGCTCTAGGTATGAAGACAACTTACTTTGTAGGTG
Right flanking sequence: Indices 579617 -- 580116
AAAAGGGTGGTCTCCAGTTAAAGAATTCAATGCTGGTGTGGACCAACTCCTTTTATTACCCAAGA
GAGAGGGAGGGTCCTGCCCTTCCTTTATAGTAAGGGTCCTTGCCTTCCTAAGGTTCCCGGTCCTG
GCTAGATAGAAAGACAATAGGGGTAGTCATCTCCAACAGGTCTCCTGGTCCTGCCTGGTTCTAAG
CATGGTCCTGCTAGTTCGGCAGAAACTGGCTTCCTCCTGGTTCTAAGCTCAGTTTTTTTTTGCTA
TTTCCTTCCCCTCCGGAGCCTATTTTGGCGCGGCTCCGCTCCTTTCTTTACTTAATCTCTTAAGG
GGGACCTTACTTCGTGATTTCAGAACCTTACCTACCTCGTTATCTCTGGGTTTCCAATCTGGACA
TATACTTCTATTACCTGACTTGTACTTCGTTATCTCTATATCTTCTCAGGACCTTACTTCGTTAT
CTCTTCTTTCATTATTGAATATTCTCTTGCTTTACTTAGTTATCT
Found at i:581561 original size:30 final size:30
Alignment explanation
Indices: 581521--581578 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
581511 AAGGCAATAA
* *
581521 GGTACTATCTCATTCGT-TAGTTGGATCACT
1 GGTACCATCTCATTCATCT-GTTGGATCACT
581551 GGTACCATCTCATTCATCTGTTGGATCA
1 GGTACCATCTCATTCATCTGTTGGATCA
581579 ATGGGACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (30 bp):
GGTACCATCTCATTCATCTGTTGGATCACT
Left flanking sequence: Indices 581021 -- 581520
GTCCATGGCGACCTCCTGTAAATGAGACCGGGTATGACTGTTTGGCTACAACTACTGGGCTATGT
GCTATTGGGAATGCCCCTTTCTCTGTCAATGCCCTTCTGGGTATGATCAACTAAGATTGGCTATT
ATTGGTTATGGCTCTATCTCCTGGTGTAACTCAGATATAGTGCCGTAGGAGTGTACCAGGCGTAC
TTACATGGGTGGTGCCTTACTTTACTGGTATGGGCGATTAGCTCTAGGCTCAAGCAGGCAACACA
GGAGAGAAGGCGACTAGATTAGGGCTTTCGGTGAAGGTCCCACTTGGTGTGCTGGCTCAAGTAGT
TCCAGGTGGGCTTAGTGATGATCTTTTAGTTCTAGGCTTTTTGTGAATGTTTCCTCCCTCTGTAT
AGCCAGTGTAGGCGCATTATCCTAAAAGAGTGAATCGACGTATGTAAAAGCATTGTAATTCCTTT
TATTTAGTAAGGCTATAGGGTCCAGGCAAGAGGGTAAGGCAATAA
Right flanking sequence: Indices 581579 -- 582078
ATGGGACTATCTATCTGTGCCGTTGTCCGTCCGTCGGACCATCCCACCTCAGGCAATTAATCAAT
CAAGCATCCACAATGCCCCTCTCTGTCGATGTCTTTAGTCCGTGGGACCGCCCCACCTGAAATAA
ATATGTGGTCAATCAATCACTATCTGGCATCCACTGTATGCGCCGCTCTCTGCGGATGTGGGCCC
TCAATCAATCCACTATAGGGTGCCAATCCTTCCCTGTGTCTTATTCCCCTTTGATTTGTCCCCTT
AGGTTCCTTCGAGTAGGCCCTGTGAGTACGCTCTGTGTCTTATTCCCCTCCCCATAGAGTAGCCC
CCTGTATATTAGGCCCCTCGCTGCGGCTTAGTCCCATTGAGTAGGTCCTGCGGATTAGTCCCCCT
TCAATTAGGTCCCTTGGATTAGCTCCCATGTGTTGTTGTAGGACCTCCGGTTCCGTCTCGTTCAG
TGACCTGAAGCAGTATAATGCCATAGCGTAGGTTCGTTCCCTCAT
Found at i:583543 original size:13 final size:15
Alignment explanation
Indices: 583525--583561 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
583515 GATGGATTAA
583525 GTTACAC-GATGA-G
1 GTTACACAGATGAGG
583538 GTTACACGAGATGAGG
1 GTTACAC-AGATGAGG
583554 GTTACACA
1 GTTACACA
583562 ATTAGGGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.33
15 6 0.29
16 8 0.38
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (15 bp):
GTTACACAGATGAGG
Left flanking sequence: Indices 583025 -- 583524
AGGTGCTCAACAAAAAAGCGAATGAGTGTGTTTTTTTGGAACCGGTAGCCCATCTGATTAATCAG
GTTGAGTAGCTGAGTTCCCATCAAAGTAACCAAGTATCCAAGCCTATAAGCCAAAGCGAGCAGCC
AATCCTCCCATCCCATGAGCCCAGCTCAGCTAAGTATCTTATACCGAAGCTGAGACGCTCTCGCG
CCTGGTATTTATTTACCTTATTTTCAATTACCTTTTAGATAAAGAAGAGAGAAATAAGTAAAGCC
GTGGGTATAGAACAGTTTTCACGCACTTAGAACCGCTAGCTCCTGTTCACATGGGATTGAAACCC
AGGTGTGCACAAACAACCTCCTAGGCATGGTGGATTGAAAGGAATGTGGTAAAGGTAATGCTTAC
TGAATGCGGGCAGAAATAGAAAGGTTGGTTACACGTTGCAGGTTACACGTGGATGCATTATGTTA
CACAATGCTTTTTTTTCGTTTGATGCTTTAGGTACGATGGATTAA
Right flanking sequence: Indices 583562 -- 584061
ATTAGGGGAGTGATATGAGGGTTCCGCAAGATGAGGCTTATACAATGCAGGTGAGATGAGGTTTC
CACAATGCAGGTACGATGCTTTATTTTACACGATGCAGCTGGTTCGATGCTTGAGGTATGATCCG
CTTGAGGTTCGATGCTTTATTTTACACAATGGAGGTTACACAATCATTAGGTGGTTAGTTAGGTT
AGGGGCTTTACCGATAATACCCCTTGCCCAGTTAGACGTGATTTGTCCCCACCTGTTGCAATACT
CCGTGCCCTGGAGATGGTGGTTGTCCACGTGTGACCCGTTGTGAACGGTCGGAGATCCCCCGTAA
CCCAAAGGAAGTGTTCGTACGTGAACAGGAAAGGGGTTTTTTGTCCCCACCTGTTGCCATTCCCA
CGTGACCAGGATGGTGACGTTACCAGTTCTAAATCCCCCAGGCCCAGGAGGTGCCGATTCACTTG
TTTAGCCCCAGTCCGATAGCCACAGTCCGCATTCTCCCGCATTCC
Found at i:584653 original size:12 final size:12
Alignment explanation
Indices: 584636--584660 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
584626 TACTTAGCAT
584636 CTGTCTCTTCAG
1 CTGTCTCTTCAG
584648 CTGTCTCTTCAG
1 CTGTCTCTTCAG
584660 C
1 C
584661 GGTTTACTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.36, G:0.16, T:0.40
Consensus pattern (12 bp):
CTGTCTCTTCAG
Left flanking sequence: Indices 584136 -- 584635
TAAGTAAGCATTCAGTACGCAACTGCCCACATCTTCAAGAGGGAGGGGTACCACGGAAGGATTAA
CAACAGCCTACAGCTACCGAGAGGAGATATTTCCCACTTTGGATAATATAATATATAATGCACGT
TAATGCGCCTATACCTTAAGGGGGACTTAGTCGAGTGGATCCGCTTATGGCTACCATCTGAAGCA
ACACCTACCAGCTTGGGGGCCGCAGGCACTCAGTTTGGTGACCCAGATCTTAGAAAATCTTCTCA
GTCACTATTCTTCTTTCCAGTCTGGTCATTTAGAAGTTCAGGTACAATGCTCTAAGTTACAATAC
TCATCGGTAGCTTTCGGAGTGGAGCTCTTGCTCGTGCCCGTTTAGTTTATACCGTTTCCAAATTC
ATGTTCCTTAGCAAGTAAGGAAGTCGCTCTAACATGTTCCGTGGCATAAGTTGCTCCAACTGAAG
TGGTGAGCCCCTGGATCTAAGTTTAGCGGATCTAGTACTTAGCAT
Right flanking sequence: Indices 584661 -- 585160
GGTTTACTCCTATGTGTAGTTCATATAAACTATATGCGGCGTAGTTAATAGATCCGATTGGTTCA
AAGGGGCAAGGAGGCATTCTGTAGAATGCCGACTAGAAATATGCATTTCACACTCACTCGGAAGT
AGGTCTCGGTCATTGAGAGAGATTCAACCACGCGTGTGACTGACGGACGGTGAGAAAGACTTGGA
CGATCATTTACATCTTCATGGTCCGGTTCCAAAAGTGGTTCTCGCAACCGATGTGATGTCAGCAG
CTGGCTCTTAAACCTCAGCATCTGGCTATCGATGCACCTGGGTAGACGACCAGAGAAGGTTCCGC
GCCCGCCTCATCTCATCTGCCAACAAAGTCGGATTCGCCAGTTGACTTCTACTATGTCTGTGTTT
CACAGCGGTCTTAGTCCCTTCCTCTCTTATCTTACTATGCTGGTGAGCCTTTCTCTTTCGGAGAC
GACAAACAGTGTTTCGCCATCTGGAAGATCCGCTTCAGCTTTTGT
Found at i:588756 original size:14 final size:14
Alignment explanation
Indices: 588737--588767 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
588727 TATGCTTTTA
588737 CAACTGATCTCCAC
1 CAACTGATCTCCAC
588751 CAACTGATCTCCAC
1 CAACTGATCTCCAC
588765 CAA
1 CAA
588768 TAGCACTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.42, G:0.06, T:0.19
Consensus pattern (14 bp):
CAACTGATCTCCAC
Left flanking sequence: Indices 588237 -- 588736
AGCTTCCCCCTCTACTGCTCTCTCTACTGCAAGGACATTTGAAGCTATCTGGACCACCTATCATT
TTACTCTCTGGATCTTCGCCGCTGCTTATTTTACCGCACTTGTGGAGACTTTGACTGCTTCTTGC
ACTTGATTGATCTTTGCTTCTCCTTTACTAATGCATGTGGCTTTTACTGCTTTCCAAATTTCCAT
CATGGCTTTATTGAGTCTTTTTCTCTTGGCGCTTGCTACTATATATGCTTCTGACATTATTGCTA
TCTATGGATGGGGGTTCAGCTACTTTTTATCTTGCGTGTGACAGGCGAAAGAATTTAATTTAAGA
ATGAATTTCACGTACACTTGCAGATATGAATTTGAATTTTTGTGCGCATGAAAAGTACGTCCACA
GGCTCACCATTTCAACTGAAAACCCAACCCCTTTCTAGTAGCAAATGATTGGCTCACTAATAGCT
ATTTGTATGCAGGAATTCTCAATTTGGTTTGCTTTTATGCTTTTA
Right flanking sequence: Indices 588768 -- 589267
TAGCACTAATCATCGCTCTTACACCTACCACTCATACCACTACTACTGCTATCAGAGCTTTTATG
TTAATGGCTTCTACAACTGCTGATACATCATTTGTAGCTACAGCTGCTTCCTCTCTGGAAATATT
GATTCGCTGAGCTACTTACATGATTATTGTAATCGCTACCAAATAGCTTGAGATCTTGGCATATT
GATGGGGGTGGGAGGCACCAACCAAAATGAAATAGATATAGAATCCAATGTAAAAACTGCTAGCA
ATACATGATCGGATCCACTACGAATTGGAAAATTAGCCACAAACATTCGTTTCACCATACAGATG
AGCAACCAACAGGGTTCATCGGAAATGACGAAAAAGCAGAGCACTTCGAGTTTCAGCATGCATCA
TTATAGAAGGAATTAATGCATCTATCTTTGGATTTTTGAATCAAATTTCGAATGATGTTTCCAAG
AATCAAGTTTCGAATAGAATTGACCCTCTATCTGCCCGGGAATGA
Found at i:596083 original size:14 final size:14
Alignment explanation
Indices: 596064--596090 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
596054 TTCTCTCTGG
596064 CATTGACCTAGCTT
1 CATTGACCTAGCTT
596078 CATTGACCTAGCT
1 CATTGACCTAGCT
596091 ACGCCGACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (14 bp):
CATTGACCTAGCTT
Left flanking sequence: Indices 595564 -- 596063
ATAGTTCAATAATAGCCGGCAACATCCCTTTCAGATAAAGCAGATTCATATCCAGTTCCAAAGCT
AGTTTTTAGCCGTTTATTCAGTTTACCAAGCTGATGGACTTGAACCCATTGCCCTCCAGAAAGCC
AGTGCCCTACATGCCCCAATTTACCCCTTTTCCACGCTACATGCCCTCACGAAGCATTCATTCAG
CCAGCGATTCATTCAGCGATTGGAGCGATTCATTCATTGAGCGATTTAAGCCCTGCCCTACAGGC
CCTCACGCAGATTCATATCCAGTGGGCCCTTATGACCTTATGAGAGAGACCTTATGCCAGTTTCC
TCTCGGTTTCTCTACTTCCAACCTACCCACCTACCGGAATGCACCCAGAGTCTCCCAGCGAAGAG
CAATCAATGAATTCCAATCGACAAGGTCCCCGTCAACCGAAGAAAGGAAGGGGAGGATACCTCTG
CCAGGTTGTTTTCTTAGCTCAGCGGCAAGCCCGTCTTCTCTCTGG
Right flanking sequence: Indices 596091 -- 596590
ACGCCGACCTCCTCATGCATGTACGCTTACCTCTATCTACCAACCTCTTCCCACCCCTAGCTACC
TTCATCAACTTCTACCTAGCTCCCTCTGCATCTACGCATGCATACCCAACACCATGAAGGAGCTT
TTAGGGGAGGGGGCAAACTGATATCATCAATCATTGGGATAACCTTATCGCTACGAGAAAGAAGG
GATAACCCTTCGCTATTCGAGGGGAGGTAAGGTAAGGCGTAACGTATTTAAAGCCTTTGAGGGGA
AGAAATCAAGGGATAACCAGATATAGGTGGAAATAATAAATGGAATGAAACTAGTAAGGCAAGGC
TATAGCTAACGCTCTTAAGCCAGTTGCTAACGCACGCTTAGAAAGGAAGGCCCGCCTACCAATCA
AAGAGAGCCTGAAGCCTTCGCTCGTTGCTTTTCATCCGCCGTCTCTTGCTGGGAAGCAGCTCCAA
AGCCGTAGCTTACACCCTTCTCCCAACCTTCCATACCTGTAATCC
Found at i:598438 original size:24 final size:24
Alignment explanation
Indices: 598345--598426 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 24
598335 TTTCGGGAGG
*
598345 AGAAACTGGAGCTATTGGTTC-GA
1 AGAAACTGGAGATATTGGTTCGGA
** * * *
598368 GAGAAAGGGGATATGTTGG-CCAGGA
1 -AGAAACTGGAGATATTGGTTC-GGA
*
598393 AGAAACTGGAGCTATTGGTTCGGA
1 AGAAACTGGAGATATTGGTTCGGA
598417 AGAAACTGGA
1 AGAAACTGGA
598427 TATGTTGTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
23 1 0.02
24 39 0.91
25 3 0.07
ACGTcount: A:0.33, C:0.11, G:0.35, T:0.21
Consensus pattern (24 bp):
AGAAACTGGAGATATTGGTTCGGA
Left flanking sequence: Indices 597845 -- 598344
TTGTCGCTTGTTTAGCAGGGCTTGTCTTTATATGGCTGGGGTCAAGAGACAACAAAACTTGAGTG
CGGAAGGAGACAGTCACTGGCTCGTTCGTAGGACACTCTCACTCGAAACGAAACAAAAGATCAGA
CTCAGCTAGCCATGAGACAAAAAAAAAACTATAAGAAAGGGGACAGTCATGGGCTCGTTCTTAAG
GTGGTACACCTCCATACTTAACAAAAACCTAATTGGACACTTCAACTGAATGCCCAGGAGTAACT
GAATGCCCAGGAACCGAGATTTCATCCTCGGCTCTTATGGGAATGCTATTTCGAGGAATGCTGCT
TCCGGATAAACTAGATATGTTAGTTTGGCTGATGCCGGTTTGAATGCCTCCTCTGACTGAGACAG
AGGGTTTGGCTTCTGGTTTGGATGCATATGGGGATACTGAGCCGTCGTCTGATGCTGAGGGGGTC
GGGATATAAGGGATCGGGAGACACCGGAGCTGTTGTTTCGGGAGG
Right flanking sequence: Indices 598427 -- 598926
TATGTTGTTTCGACGTCTGCCGATGCGTATGCAGCAGATTAGGACGTGGATGGAAATGTGGATTA
TGGGGATGCTTCCTCTTTGAAAACCTGAGGAATGAATAGCCCAGTTCCCTTATGAAGTGAAACAA
CCGTATAGTCTTTGCTCTCCTCTGGATCAGTCTCCCGTGTAGTGAAAGAGTCTCCCAGCAGAGCA
GTAAGTAGTAGTCCCAGTAGCGGGTGGTCCTCTTGCCTAGCGGAAGGAAGCCCTTCATGCTATCG
AAAGACATTGCACATTGCAGCAGTCTAACCGCGCTTGCTTTGGGCACCACCCCGGGCACAGCAGA
ATGAGAAGGCTCAGCGCACTAGCCTAGCGCACTCAAGCAGCTCAGTTTGTTTTCCTTTATTCCCG
CTAAAGCGCTCTAGTTGGGTTGGGTGACGCGCACACCGCTTGTTGATTGCATTCGATTTCATTAT
GGGTAGTTCTACTACTAAAGAACGGCAAAGACATGATTTGCTTTT
Found at i:600984 original size:16 final size:16
Alignment explanation
Indices: 600963--600996 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
600953 CAGACAGTAA
600963 AGTTTAACCCACCTCT
1 AGTTTAACCCACCTCT
*
600979 AGTTTAACCCACTTCT
1 AGTTTAACCCACCTCT
600995 AG
1 AG
600997 CCAGCAAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.32
Consensus pattern (16 bp):
AGTTTAACCCACCTCT
Left flanking sequence: Indices 600463 -- 600962
TCAAAGAGGAAGGGCCAGAAGAAAATAGTCAATAGTATAAGAGCCGCCTCCCCCTATATCTTTAG
GTAGAAACCAACAACCAATAATATCATTAGAGAAGCGCCTCCTTTCTCCGACTAATCCGGGGAAG
CCAGATAGTCTCGCCGGGAACCAGATCGATTCAGAACGAACGAATGCGCCAATGCGCCCGCCAAC
GCGCCTTGATTCAGCGCCTCTAAGGCGACGAATGCGAGGATGCTCGGTGGCGAATATTGTTTCAA
TAATATAAAGTAATTGCCAAATTGGTTGATGAAATAAGTCTTCGAGTTACTCCCTTATAGATAAG
GTAATTATAAGAACGACTTCCTGGTTTATGAGGTAAGTATTTGGACGACTCCCTTCTTGAGAATG
CAATTATGCAGAAATAGCAGAAGCGGAAATAGCTTTGTATCTTTCCTCGCCCTGACCAATAAAAA
TATCCTTCCTATCCAGTAGTTTAACCCACCCAAGACAGACAGTAA
Right flanking sequence: Indices 600997 -- 601496
CCAGCAAGCGTTAAGCCACCCGTTAAGCCTGCCTGCCAGTAATAATCAATATATCCCATCCAGCA
AGCCCGAATGAATCTATTTATGTGAATTTATTTATGAAGGAAAGTAAGTACGATTCATAGTCCTT
TCAGGCCGCCAATGAATCTCTCTAGGTACGGAAAGGCATAACTTACTTCTTCCTTTCAAACGATG
AGGACCGCCTACCTAGTGCTTCCCTGAGAATCACAAACGCTATAGACAGAAGAGACCTGGCGTGC
TTCCTTGCTTGAGAACCCTAGTTTGTTGCGTGGGGCCCGTTACCCCCACAGACTTGAAACGACCG
CACGCAGGAGCTTACCTTACTAACTACGCTGCTTTCCTGAGAACAAAAAACAAACGCCGTATGCT
TTACTGACTTAGGAGCTTACCTTACCTTACTTACGAGCTTCCCTGAGAACGACGACCGCATAGTT
AGTTTTTTTAGTGCTTACCTTTGTTAGTGCTTACTTACTGCCTTA
Found at i:602279 original size:23 final size:24
Alignment explanation
Indices: 602252--602297 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
602242 GTGAACCGGT
*
602252 CAAGGTAAGG-CCATAGGTATAAG
1 CAAGGTAAGGACCATACGTATAAG
*
602275 CAAGGTAGGGACCATACGTATAA
1 CAAGGTAAGGACCATACGTATAA
602298 CTGCTTGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.17
Consensus pattern (24 bp):
CAAGGTAAGGACCATACGTATAAG
Left flanking sequence: Indices 601752 -- 602251
GCCTTACTTTAGGAGCTGACTTGAGAACGACGGACGACCGCTACATCTTGGTTTATGACCTTAGA
ATGACCACCGCATAGTGAATGAAGTTTGTGCTTGCCTTACCTTACGAGGCTTACGACCACTACAT
CGTGCGTTAGTGAACAGGCCGATTGTACAGGACGGGCTCGAAAACTTCACCGTCTCTGTCCATTA
GATGCTCATCAGTCGGGTTTGATTTCTTAAAATAGTATTGGGATGGGCTGGTAAAGAAGTTGATT
GTAAAGATGGGAGGATTTGGAATATGGACTTTCTTGGTACTGTACTGTACTGTGGCTCCTAAGTA
ATAGGGAAGGAAGGAGCCCAGCCGTACTGGGTGTTTTTGCTTGGCCTTTCAGAGGTTTCACTTTG
GTTCCTTCGTACCTTGATTCCTTGGTTTGTCTGGTCCCGAAGTGACTGCACCTGGCAAGGTAGGT
ATTAAGCAAGTAAAGTACTGTCCTGAAGTAAGAGCGTGAACCGGT
Right flanking sequence: Indices 602298 -- 602797
CTGCTTGCTTCGCTTCTTCCCTTCCCTTCCTTTGGTTAGTACCGAAAGAAGGAAGGTGACTCGAC
CAAAGAAGGTATTAAGCAAGTAAAGTACTGTCCTGAAGGAGAAAGAAACCTACCCCCGTACTCTG
TACCTGGTTCAACTATTTGGCAATACCCCCTTGACCCCGTAGATTAGCCTTTGTAATGCCCCGAA
CTTACAGCATTGGATCGGATGGATGGAAGGGCTTCAAATAGAGCATCGTTGGACGGGACGGGCGT
TCGACAACACTTGTGCTATATAATCTTACTTGATACGGTACTTAGACCTTTGCTATTAACTTGGT
CAGCCTACTTTATTTATGATTCTTTTCAGTTGGACCTACAGCAACCACCAGTTGTGATGGGATCG
TTGGAGCTGCCCTCTTTTTGAACTACTGCCTTAACTTCAGAGATTATATGGGCGGGCACGAAGAA
CATCGCCATTTACCTGCCGGCCTACAGAATGAATGTCCGTTGGAA
Found at i:603100 original size:30 final size:31
Alignment explanation
Indices: 603064--603141 Score: 104
Period size: 30 Copynumber: 2.5 Consensus size: 31
603054 TCCTTCTGGC
*
603064 AGGCTTCACCCCTGTTCTTTATAGAG-CCAG
1 AGGCTTCACCCCTGTTCCTTATAGAGACCAG
*
603094 AGGCTTCACCCCTTTTCCTTATAGAGTCACCAG
1 AGGCTTCACCCCTGTTCCTTATAGAG--ACCAG
*
603127 AGGATTCACCCCTGT
1 AGGCTTCACCCCTGT
603142 CAGCGCTAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
30 24 0.59
33 17 0.41
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.29
Consensus pattern (31 bp):
AGGCTTCACCCCTGTTCCTTATAGAGACCAG
Left flanking sequence: Indices 602564 -- 603063
ACACTTGTGCTATATAATCTTACTTGATACGGTACTTAGACCTTTGCTATTAACTTGGTCAGCCT
ACTTTATTTATGATTCTTTTCAGTTGGACCTACAGCAACCACCAGTTGTGATGGGATCGTTGGAG
CTGCCCTCTTTTTGAACTACTGCCTTAACTTCAGAGATTATATGGGCGGGCACGAAGAACATCGC
CATTTACCTGCCGGCCTACAGAATGAATGTCCGTTGGAAGCGACCCACCCAGTCTTGGATCGTTG
GAACAGCCAGCCTACCAGCCACTGTCTGGGCTCCTACGAGAAAACTCGACCGAGATCTGGTGAAC
CTCGACTTTGTCATATATATATCCTGGCGAACCAAAACCAGGAATCTAAATATAAATATAAAAGA
TATTACGTCTGAAAACCTGGCTCTAGTTCTATCAAGGTATGCGAAGAATCCTCTCATTTGATAAG
TTTTTGGTGGGGTTTCAGAATCTTCGTTCCTATATTCCTTCTGGC
Right flanking sequence: Indices 603142 -- 603641
CAGCGCTAGAGCCAGAGGATGATCCCCTGCCTGATCCAGAGGCTTTGGCACCGCCGTCTTTCTCA
CCCCCTCCCTCCCTGCGGCACTGCTGTCCGTCGTTTATAACCCTCCTGCTGCTGCTGCTGCTCAT
GATGAAGAGCTCCCATCCTCTAATGACGCTTTTCCTCTCTGAAAGATGGTTTAGCCTCTGGGGTT
GGGATAGAAAGCAAATAGGAAATATAAGAGTATTAAGTATTTCCATCTCTGTATGGCAAGCTCTT
TCCTGCCCTTGCCAATGAGACAGGCTATTACAATCACTGGCTGCTATTGGCGACCACTAGCTCGG
GACCTACCTCCTCCATCCTGGGTATAAACACTTGGCATCGAGTACCGGCAATTGATTCCTGAAAT
CTAGCGGTAAGTGGCTAATCGCGTCGGGTCTGTAATTGGGCTAAAGTAATTGGTCACAACTAGGC
AATTGGTTACAACTGGTAAATAGGTCTCAAGTAATTGGGCTCAAC
Found at i:612733 original size:14 final size:15
Alignment explanation
Indices: 612695--612745 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
612685 ATCCACCAGC
* *
612695 AGACTCTACAGGGCA
1 AGACCCTACAGGACA
612710 AGACCCTACAGGACA
1 AGACCCTACAGGACA
* *
612725 ATA-CCTACAAGAGCA
1 AGACCCTACAGGA-CA
612740 AGACCC
1 AGACCC
612746 ACCAAAGCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 8 0.28
15 19 0.66
16 2 0.07
ACGTcount: A:0.39, C:0.31, G:0.20, T:0.10
Consensus pattern (15 bp):
AGACCCTACAGGACA
Left flanking sequence: Indices 612195 -- 612694
AACCGATGAAGCAACTCGATCCGCATATAAACAAAATATGAATATGTAATGAGCTATCGAACTAA
AGAGAGATGTGGGCACGGGAATTGGAACGTAAACCAATACACAATAGATCATCGCTTGCAGCAGC
TTGCACAGCGGATGAACAAGTGGTTTTAATGATAGGTACCTAGGCAGAGATAGAGAAAGCGGCAT
ACCTTATAGTTAGAGATCTAGATCCATACCCCGCAGTGAGTGGGGAAGGCAGCAGATCCAGGTCC
CTTTTACCTATCAGCAGACGCAAAATCGAGGTGGCAAAGGCATAAGCACCACCAATAAAGGCGGC
TAGAGCACGGACATAGGAGGTAGCTAGACCAAGTCCATTACCAGAACCACCAGCAGCAATAGATT
CTTTTGATTATACTTTTTATTACGCTGTTAATTCAGTAGATGTTGAGTCGGATGATCCAGTCGAT
GAAGCAGTCGGTGAAGCACGCAGAGGCAGCAATAGATCCACCAGC
Right flanking sequence: Indices 612746 -- 613245
ACCAAAGCCATTCTCACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAGCAGCACTAGCACC
ATCACTAGTATCAGTAGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCCCGGTATCCCAGCC
CAGCAATCGATTCCATCCTGCGACTTAATTCTACATGAAACACATAGCTTAGATAATAAACTATA
TAGAGCATATACTTATAGGCGTAGAAAATACAATATCTCTGGTGATGCATTTTTCTCCGGTACTC
GCTGGTAGGCCATGCCAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCTGGTAGGTGCGATC
CAGGTGTCGATCCCAGGAGTCGATCCCACTACTCAATGCCAAGAGTCGACCCAGGTGTCAATCCA
CTCAATGCCAACCAGTCATTGCCTCAGGGTGCGGCCTTGCCGGGAGGCCTTGCCGGGAAGCCTCA
CCAGGAGAACTATAACATAGCACAATACCTTGACCCTCCAACTAT
Found at i:613092 original size:13 final size:13
Alignment explanation
Indices: 613066--613098 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
613056 CTGGTAGGTG
*
613066 CGAT-CCAGGTGT
1 CGATCCCAGGAGT
613078 CGATCCCAGGAGT
1 CGATCCCAGGAGT
613091 CGATCCCA
1 CGATCCCA
613099 CTACTCAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.18
Consensus pattern (13 bp):
CGATCCCAGGAGT
Left flanking sequence: Indices 612566 -- 613065
CCACCAGCAGCAATAGATTCTTTTGATTATACTTTTTATTACGCTGTTAATTCAGTAGATGTTGA
GTCGGATGATCCAGTCGATGAAGCAGTCGGTGAAGCACGCAGAGGCAGCAATAGATCCACCAGCA
GACTCTACAGGGCAAGACCCTACAGGACAATACCTACAAGAGCAAGACCCACCAAAGCCATTCTC
ACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAGCAGCACTAGCACCATCACTAGTATCAGT
AGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCCCGGTATCCCAGCCCAGCAATCGATTCCA
TCCTGCGACTTAATTCTACATGAAACACATAGCTTAGATAATAAACTATATAGAGCATATACTTA
TAGGCGTAGAAAATACAATATCTCTGGTGATGCATTTTTCTCCGGTACTCGCTGGTAGGCCATGC
CAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCTGGTAGGTG
Right flanking sequence: Indices 613099 -- 613598
CTACTCAATGCCAAGAGTCGACCCAGGTGTCAATCCACTCAATGCCAACCAGTCATTGCCTCAGG
GTGCGGCCTTGCCGGGAGGCCTTGCCGGGAAGCCTCACCAGGAGAACTATAACATAGCACAATAC
CTTGACCCTCCAACTATAACCTCGAACCTCTACCCTTGATCTCTTCACCTCACATAGCTCTGATC
ATCGCCGGTAGTCATTGCTTGAAGGTCATTGCCACTAACTAATAGCCTTTCCTTTTTGATTATAG
CTAGTCATAACCTGTTTTCATTGCCGATATAGCCAGTTGTCATAGCCAGTCTCATTGACAGCAGG
TGAAATGGAACCATAGGTATCTACCCTACTCTACCTCTTCCTCGAACCTCGACGGAGGAATAAAC
ATAGCCCTCGACCCTCTCATTAGATCTTTTTATTTTTATAAAACAACTTCAATTAATAAAATCAA
TTGTGTCTCCCTGCTCCTGCTTCACCTCCTAATCGGGATCAAATC
Found at i:613184 original size:13 final size:13
Alignment explanation
Indices: 613168--613198 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
613158 CTCAGGGTGC
613168 GGCCTTGCCGGGA
1 GGCCTTGCCGGGA
613181 GGCCTTGCCGGGA
1 GGCCTTGCCGGGA
*
613194 AGCCT
1 GGCCT
613199 CACCAGGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.32, G:0.42, T:0.16
Consensus pattern (13 bp):
GGCCTTGCCGGGA
Left flanking sequence: Indices 612668 -- 613167
CGCAGAGGCAGCAATAGATCCACCAGCAGACTCTACAGGGCAAGACCCTACAGGACAATACCTAC
AAGAGCAAGACCCACCAAAGCCATTCTCACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAG
CAGCACTAGCACCATCACTAGTATCAGTAGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCC
CGGTATCCCAGCCCAGCAATCGATTCCATCCTGCGACTTAATTCTACATGAAACACATAGCTTAG
ATAATAAACTATATAGAGCATATACTTATAGGCGTAGAAAATACAATATCTCTGGTGATGCATTT
TTCTCCGGTACTCGCTGGTAGGCCATGCCAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCT
GGTAGGTGCGATCCAGGTGTCGATCCCAGGAGTCGATCCCACTACTCAATGCCAAGAGTCGACCC
AGGTGTCAATCCACTCAATGCCAACCAGTCATTGCCTCAGGGTGC
Right flanking sequence: Indices 613199 -- 613698
CACCAGGAGAACTATAACATAGCACAATACCTTGACCCTCCAACTATAACCTCGAACCTCTACCC
TTGATCTCTTCACCTCACATAGCTCTGATCATCGCCGGTAGTCATTGCTTGAAGGTCATTGCCAC
TAACTAATAGCCTTTCCTTTTTGATTATAGCTAGTCATAACCTGTTTTCATTGCCGATATAGCCA
GTTGTCATAGCCAGTCTCATTGACAGCAGGTGAAATGGAACCATAGGTATCTACCCTACTCTACC
TCTTCCTCGAACCTCGACGGAGGAATAAACATAGCCCTCGACCCTCTCATTAGATCTTTTTATTT
TTATAAAACAACTTCAATTAATAAAATCAATTGTGTCTCCCTGCTCCTGCTTCACCTCCTAATCG
GGATCAAATCAATAAATCTTCCATCAATCATTCCTTCAACGCCGTCCCTTCCTTGTCCCTTTCCG
TCAACATGTCTGTTGGCTGCCCTCCCTCCGTCGGGGTTATATAAG
Found at i:614334 original size:22 final size:22
Alignment explanation
Indices: 614304--614365 Score: 106
Period size: 22 Copynumber: 2.8 Consensus size: 22
614294 TTCCTTCTGT
* *
614304 TGCCCTACTTGGACTGTGTGGG
1 TGCCTTACTGGGACTGTGTGGG
614326 TGCCTTACTGGGACTGTGTGGG
1 TGCCTTACTGGGACTGTGTGGG
614348 TGCCTTACTGGGACTGTG
1 TGCCTTACTGGGACTGTG
614366 CGGGCTGGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.10, C:0.21, G:0.37, T:0.32
Consensus pattern (22 bp):
TGCCTTACTGGGACTGTGTGGG
Left flanking sequence: Indices 613804 -- 614303
GCCATCCCGCTCCTTTCCTTCTTCATCTCCCGGCAGAATACTACTCCCGGTTGTCATAATCCAAA
TCATCCAGCTCCTCAATCAATCAAGTAAAAGCCCATCCCGGAAGACCTGTCTTGTAAGCGCATCC
CCCCGTAATACTGCCCCGTACACCCCTCTAAGAAGACTGTATTTCTCAATCAAATAAATCACTCC
TCAGTGGGCTTGGCAAAAGGGTGAAGGCATCTATCTGTTGTCCTTCTGTTGTCCTTGTTGAGGTG
GGCGTGAGGTTAGGCTAAAGGTAATTTGCTAGAGGTGCTAGGCATCTGTTGAGAGGTTACAGGTT
ACAGGCTGATAAGAGGCTCAAGGCATCTGGTGAACGGCTTAGTTCGGGGCTCCTTCCCACCCGGT
GAAAGTCTAAAGGTGAAAGGCCCCTGGTGAAAGACAAAAGGTGATGGTTGGGTCCCCACGGTGAA
GGTTTTTTTGCTAAAGGTGACTGATGATAGGCTGATTCCTTCTGT
Right flanking sequence: Indices 614366 -- 614865
CGGGCTGGCTTTTCAAAAGGTGAAGGCAAAAGGTGAGAGGTTACAGGCTGACATCTATGGGATTT
GGCTTAAGGGTTTCAAGGTGAAAGGTTTGTGTGATACTTTCTTCCTTTAGCCTTTTTTTTAACCT
TGAGCCTCACACCTTCAACCTTTATATGCCGGTACTTATGACTGGTGGTGATCCCAGGGTGGAGG
AGGTACCGATTCACTTTTGCCAATATTGAAAAGAAGTACCAGGTGCACAAACAGGATTGCAGCAT
GCCGAGAATAAGGTACCGTAGGAATAAGGTAACGCACCGGGAAGAAGGTACCGCACCAAACTACT
TTGCTCGTTGGTACCCCTCAACCCCACAAACAACGGACGAAGGAGACATTGTAGCCCGAGGCGGC
AAATCGACAGGCAGGCTCGCTCCCCCCTGGGCTCTTTGCCTGGCCGGGAGGATCGGCAAAAGGGG
ACGGCTTTAAGGCCACTCTATGAAGTGAAGTCTCATGTTAAATAA
Found at i:614673 original size:19 final size:19
Alignment explanation
Indices: 614646--614682 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
614636 AGGTACCGTA
*
614646 GGAATAAGGTAACGCACCG
1 GGAAGAAGGTAACGCACCG
*
614665 GGAAGAAGGTACCGCACC
1 GGAAGAAGGTAACGCACC
614683 AAACTACTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.24, G:0.32, T:0.08
Consensus pattern (19 bp):
GGAAGAAGGTAACGCACCG
Left flanking sequence: Indices 614146 -- 614645
TCAAGGCATCTGGTGAACGGCTTAGTTCGGGGCTCCTTCCCACCCGGTGAAAGTCTAAAGGTGAA
AGGCCCCTGGTGAAAGACAAAAGGTGATGGTTGGGTCCCCACGGTGAAGGTTTTTTTGCTAAAGG
TGACTGATGATAGGCTGATTCCTTCTGTTGCCCTACTTGGACTGTGTGGGTGCCTTACTGGGACT
GTGTGGGTGCCTTACTGGGACTGTGCGGGCTGGCTTTTCAAAAGGTGAAGGCAAAAGGTGAGAGG
TTACAGGCTGACATCTATGGGATTTGGCTTAAGGGTTTCAAGGTGAAAGGTTTGTGTGATACTTT
CTTCCTTTAGCCTTTTTTTTAACCTTGAGCCTCACACCTTCAACCTTTATATGCCGGTACTTATG
ACTGGTGGTGATCCCAGGGTGGAGGAGGTACCGATTCACTTTTGCCAATATTGAAAAGAAGTACC
AGGTGCACAAACAGGATTGCAGCATGCCGAGAATAAGGTACCGTA
Right flanking sequence: Indices 614683 -- 615182
AAACTACTTTGCTCGTTGGTACCCCTCAACCCCACAAACAACGGACGAAGGAGACATTGTAGCCC
GAGGCGGCAAATCGACAGGCAGGCTCGCTCCCCCCTGGGCTCTTTGCCTGGCCGGGAGGATCGGC
AAAAGGGGACGGCTTTAAGGCCACTCTATGAAGTGAAGTCTCATGTTAAATAAAACAGGATGCCG
CCCTTTCCCCCTTCATCAGCTAGAGAGAAGGACCACTTCACCACTGGTCGAGAGGAGAAGGAAGT
CCACCATTACACCCCGAAAAAGAAGAAAGAGACCAGTCTCCTAAGCTCTCCATAGGGTAAGGTAA
GTTCCATGTTTAACTTTTCCAATTTCATAGGGTGATCCTTAGCACCCATTCTCTAAAGAAACAAC
CCGTTTTGAATCCATGGTGTTTGGTTGGGACAGATTTAAAAACTTCTCTCGTTTGGGGCGTTTTG
CCTTAGTCACAACCTCATTTTTAGGGTTTCGATCCATCCATCGGG
Found at i:615427 original size:19 final size:19
Alignment explanation
Indices: 615380--615428 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
615370 TTATACTCGC
*
615380 CATATCTACGTGAGAATCA
1 CATATATACGTGAGAATCA
* * *
615399 TATATCTACGTGAGAATCG
1 CATATATACGTGAGAATCA
*
615418 CATCTATACGT
1 CATATATACGT
615429 CCTTGCCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (19 bp):
CATATATACGTGAGAATCA
Left flanking sequence: Indices 614880 -- 615379
CTTTCCCCCTTCATCAGCTAGAGAGAAGGACCACTTCACCACTGGTCGAGAGGAGAAGGAAGTCC
ACCATTACACCCCGAAAAAGAAGAAAGAGACCAGTCTCCTAAGCTCTCCATAGGGTAAGGTAAGT
TCCATGTTTAACTTTTCCAATTTCATAGGGTGATCCTTAGCACCCATTCTCTAAAGAAACAACCC
GTTTTGAATCCATGGTGTTTGGTTGGGACAGATTTAAAAACTTCTCTCGTTTGGGGCGTTTTGCC
TTAGTCACAACCTCATTTTTAGGGTTTCGATCCATCCATCGGGGCACAGAAATGGATTTTCTTGT
TACTAAACTATACCCTTTTGGAACGTTTCTCTCTGGCCAGGATTCATTGGGGAGTTTGCATTGGT
TACAGGAGGTCGTCATTGCCGAGAGACGCAAGTAAGTGTGCCTGGGTTATTCGCTCCCGATTCCC
TAGTTTATGCCCCGATTACCTTGTTACTTTCCATGTTATACTCGC
Right flanking sequence: Indices 615429 -- 615928
CCTTGCCATTGTAAGAATTTGTAATCTATGCAACCTCACCTTTCACCTTTTGCCTTGAACCTTCG
ACAGATGCCAGGCCCAACGAGTACAACAGAGGAAGCAAGTAAACGCCTTTGAGCCGAAGAAGTGT
GAGAGAAGGTGAGCGGAAGATCCAGAGTTTAGTTAGAACAGAATCACTCGCATCTATACGTTTAA
CTTTTCCATTTTAACAAGAAAAAAATCCATCCCACAACCATCCATATCTAAGAAATCTCTACTAC
ATCTCTAGCTCTCCATGGGTTGAATAATGCGCCATTGAAAAAGAAAGAAAGAAATAAGAACTACT
TCTAAGAGCGAGAAGAAGCTTCTTATTGTCTCCTTTTCAAATAGGAGAAGACCTAGCTGGGAAAC
CTAACCTTATATGCACAATCCGAAGCCGAGAGGAAGGCTGAAGCCGATAGGAAGGAGAAGAAAAG
AAGTTACCCCATTGTTTAAACCAGAAGACATTGGTTGGAGTTTGG
Found at i:618463 original size:13 final size:13
Alignment explanation
Indices: 618445--618470 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
618435 TCGGGCCATA
618445 TTATACGCACGCT
1 TTATACGCACGCT
618458 TTATACGCACGCT
1 TTATACGCACGCT
618471 CTACTGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (13 bp):
TTATACGCACGCT
Left flanking sequence: Indices 617945 -- 618444
ATCTGTAATGGAGATCACATTGGTAGGGATATAGGCCGACACGTCTCCAGCTTTTGTTTCAATGA
CGGGTAACGCGGTCAAGCTACCCGCACCTGTCTGGTCCGATCGTTTAGCGGCTCTTTCTAATAGA
CGGGAATGTAACTTGTTCACCCGTGTCGGTTTGGGGTACGGTTAGTTCACCGGGAGGATCGCCCT
CCCAATTCGAAGTTGTTTCCTTGAAGTTGAAACCCTAAGTGCGCTTTCGCATTCATTCTATTTGG
TTTCCCCTATTTGATTTCAAGAACGGCTCTTGGCGTTGCAAAGAGGCTCGATCACTTCCTTTTCC
ACTAAGCGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTCTGGATCTT
AGCACCCAAAGTCTGTCTGTACGATTGATTAAGCCTGTACTCTTTGTTTCGTTGGGGTTGGTCAA
GCTTTGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATA
Right flanking sequence: Indices 618471 -- 618970
CTACTGAAATAGATTTATAGAAAACCAGCTATATCCGATCCTCGACAAAAGGAGAGGAAGCGTCC
TTACTTATCAATGCCCGGGCATCCATTCTATACTGGTTTCTAATAAAACGAACACTACTAAGGAA
CGGTGACTTGCGCTATGGCCTAGGCGCTCCCCTTCGTGCTTTTCGCTATTATTGGACCAGAAATA
GATTCGAAGCCGATCCGTTTCATCATCGATTTCGCTTTAGCAGCTGCGCGTCTCCCTTTCTTTTA
TATCTCGATTCGGGCGGGTGACGCATCGCATATTCGAGATGACGCTCTTGCGATAAGAGTCAATT
CGTTTTATTTACGTAATTACGCAATCTTCAAATATCGAACGGTAAGCCAGATGCTTCGCGAACCA
ACCATATTCCGGAGTAGTCCGGTGCATTCCGTTGCACTTCCATAACCCTCGTTAAGGGGCGCACT
CCGATACCGTTGATGTCCGATAGCTTTGATAGTAATGGCTGGATT
Found at i:625645 original size:17 final size:17
Alignment explanation
Indices: 625623--625655 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
625613 GCATCTGCAC
625623 CTGTCTCTCGTCGACCG
1 CTGTCTCTCGTCGACCG
625640 CTGTCTCTCGTCGACC
1 CTGTCTCTCGTCGACC
625656 ACGGGCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.42, G:0.21, T:0.30
Consensus pattern (17 bp):
CTGTCTCTCGTCGACCG
Left flanking sequence: Indices 625123 -- 625622
TATTCCTTCATCCGGTAACGCCCCTAACCAATCTGTAGTCCATCGATCAATTGATAACTCGATTG
TTTCACCCCACCCCAGCAAGAATAGAGAAGAGAGACTATCAATCGATAGACGGACAGGTTTCAAT
AGAGAGATCTCAGGAGGGCAGGTAGCGAGATAGAAGAGATCAGGGGGTAAAGATAGATAGACGGG
CAAGAAGATCGATCCGGGTTTCAATCAGGTCTCCGGTTCGGTCGCAAGGTCGATGAAGGCAGTGA
GTATGCTACTAAACATTGCCAATGCATGAGTAGCTGCAGTGACTGGCACTGACAAGAGCTTCTAG
CAATGAGACTGAAAATGCCAAGCTGCACCTTATAGCTCTGATTGACAACTGTACATGACTAGCGA
CTATGACTCTTGGATCGAGTATCAGCATCGAATAGCCGCATCGACTGTTTCTTGGATCGACACCT
GGATTGACGCCTGGCATCGACTGCATTGAGTACCGGCATCTGCAC
Right flanking sequence: Indices 625656 -- 626155
ACGGGCTTTGACCTCCTGTCTATAATCGACTATTGGCTGAGCAACTTACGAAGAGAAAGGGGAAG
TAAAGGGTAGGCTGGCAAGGTGAGGTCGGAGGGTAAGTATAGGTTCATTCATAGGCAGCATGTCC
TAGGGTGAAGGATGGCTGAGGCAGAGGTGTCAAAGGATAGTAGTAGTCCCACCAAGAGGTCTGAT
TCTTAGGTTACCAAGGCTAGTCCACCCAAGGCTGAGTGCATTGCATAGGCTGGAGGGTCTAGGGA
TGAGGTTACAAAGGCTAGTCCAAAGTCTGTAGGGGTGAGTTTACTAAGAAAAGCTGAGTTTCAGG
CATTTTCAAAGGAGTCCCAAGGTGCGAAGCAGGCAGTTCCAAAGTCTGATTTCCAAAGGCTATTC
CCACCCGAGTAGGAGGTCTGAGGCATAGGTTTCCCAAGGAGGAGGTTAAGGTCCCCCCAAGGAGG
AGGGCAGAGGCAGGTTATAGAGTCTAGCCATAGGTTGACTTAAAG
Found at i:627082 original size:9 final size:9
Alignment explanation
Indices: 627064--627093 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
627054 ACTCAATACG
*
627064 CCAGCCAGC
1 CCAGCTAGC
627073 CCAGCTAGC
1 CCAGCTAGC
627082 CCAGCTAGC
1 CCAGCTAGC
627091 CCA
1 CCA
627094 CCTGCCTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.23, C:0.50, G:0.20, T:0.07
Consensus pattern (9 bp):
CCAGCTAGC
Left flanking sequence: Indices 626564 -- 627063
AGTTTCCAAAGGCTGAGTGTAAGGTCCCAAGGCGGAGGTCTAATGATGGGTTACCAGGGATAGTC
CCACCAAAGTATGATTTCCCAAGGCTGTTCCCAAGGCGGGAGGGTGGAGGCTGTAGGATGTAGGT
ATGAGTTTAAAAAGGATAGTCCCAATGATAGATTATATCTGTGAATATTCCACGCGCCGTGCATA
ATCACCACCTCACACACAACGACTCGTTAACATGGGCGACATCACTTCTGCGGGAAGGCAAGGTT
CAATCATAAGGCAAGCGGTAGCGACCATAATCCCGAATTTAACCTCATAATTGAGTAACCTCATT
ATTATTGTACATAAAGGATCGTACCTGCATTGTGTAACCAAAAAAGTACCCTAATAGTGTATGAG
GCACGGATTTATATGAAGTTATATTTATAAATTATACGTCTTGTCTACGCCTTTTCCAAGTGGGA
AATTATATACTTAAAAGTGGCCTATCCCATCCAGGACTCAATACG
Right flanking sequence: Indices 627094 -- 627593
CCTGCCTACTACCAAGCTTTGTTAAACCTTCCTAATAATACCTTTACTGCTTCGCTCGAATAATA
TGACCCACCTTACCATATTGGGGGGGACAGCCAACCCCGGGCACCTAAGGCGGGCAAGCACTTTC
CCTTTCCCGAAAGGCACTTTCCCGCCCGACACGAAAGAAAGCTGCGTTTCAACCCTTTTACCCGT
ACCTCGCGGGCCCACCAACACTTGGTTTTATTGCCGCAAGCCCCTTATGGGAACAATCATTAGTT
ACCACATCCCCTTTACTCTCTGCCGGTTTCGGGGCGCCAACTAAATGAACTTGATCCTTTCACCG
GGCGGGGAACTATATCACTCCAGGGAAGGGACCCGGATTGCCTTCACACTGCATAACTCTTTATA
TGATATATACCACCTGCTTTACTTATTAGATCGATCTTATGTACACTTTGGTAGGCAGACACTTT
GAACATCACTATTAATTGAACATCGCTATTAATATGCGGTTTTTA
Found at i:627569 original size:17 final size:17
Alignment explanation
Indices: 627547--627581 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
627537 GGCAGACACT
627547 TTGAACATCACTATTAA
1 TTGAACATCACTATTAA
*
627564 TTGAACATCGCTATTAA
1 TTGAACATCACTATTAA
627581 T
1 T
627582 ATGCGGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (17 bp):
TTGAACATCACTATTAA
Left flanking sequence: Indices 627047 -- 627546
ATCCAGGACTCAATACGCCAGCCAGCCCAGCTAGCCCAGCTAGCCCACCTGCCTACTACCAAGCT
TTGTTAAACCTTCCTAATAATACCTTTACTGCTTCGCTCGAATAATATGACCCACCTTACCATAT
TGGGGGGGACAGCCAACCCCGGGCACCTAAGGCGGGCAAGCACTTTCCCTTTCCCGAAAGGCACT
TTCCCGCCCGACACGAAAGAAAGCTGCGTTTCAACCCTTTTACCCGTACCTCGCGGGCCCACCAA
CACTTGGTTTTATTGCCGCAAGCCCCTTATGGGAACAATCATTAGTTACCACATCCCCTTTACTC
TCTGCCGGTTTCGGGGCGCCAACTAAATGAACTTGATCCTTTCACCGGGCGGGGAACTATATCAC
TCCAGGGAAGGGACCCGGATTGCCTTCACACTGCATAACTCTTTATATGATATATACCACCTGCT
TTACTTATTAGATCGATCTTATGTACACTTTGGTAGGCAGACACT
Right flanking sequence: Indices 627582 -- 628081
ATGCGGTTTTTATCAACCAACATATGTATCCGTCTCGTTCGTGAAGGGCGCCTCGCCTCTCATCA
GGGGAGGACGGCATGAGGATTACCTGATCCCTCGCTAAAGCAACTCGACAGACACAGCAAGGGAG
GGGCTCGAGAGTCCCACACCCAGGGGGAGGCGCATCGATTTTGAAATAAGGTAAAGCGTAATTTG
CACCTACTTAGACCCAAAGTCTACGTCAGATGTCCTACCGCGTCCCGATCATAGAATGTATACAG
TGGTTCGCTTCTAGCCTGACAGGCCAACCTCACCTGTTCTTCCCAACCTAATTACTGGGTTCATA
CACGCCCTTGATAACTGCTCTATAACTGTCCCATCGAAATAGCAGGAATCGGAGTTCTCTCCTAC
CCCACTTGGATATAAAGGAGTTATGATAGGTGTGTCAACCTTGTCAGTAGGCCTTGACTCACCTT
CCTTCGGGCGCACTGCCTACCTTACTCTGAAATGCCTCTGATGAG
Found at i:629940 original size:15 final size:15
Alignment explanation
Indices: 629920--629961 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
629910 GGAATGACTG
629920 TATCCAGTTGTTTAA
1 TATCCAGTTGTTTAA
629935 TATCCAGTTGTTTAA
1 TATCCAGTTGTTTAA
629950 TATCCAGTTGTT
1 TATCCAGTTGTT
629962 GATCCACCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.48
Consensus pattern (15 bp):
TATCCAGTTGTTTAA
Left flanking sequence: Indices 629420 -- 629919
ACCCACATCGATAAGGGTACGGTCCCCACTCCCAAATGGTTCCTTCGAAGCGGCTTCGCACCTCG
TCCAATTGATCAAGCAATAAGGAATACGACCAGCCCGATGCCATCCAGCAATCGATCATGGGGGA
GGAGCAAGGGGCTATGGGAGGTCAAAACCGATTATATTTACATTTTAGCTCCCTGGAAACGCTCT
TTTTTTACCTAATATGAAGAGTAGGTAAATCCCATAAGGTGAAGGCAAGTAAGCATCATTATTGC
ATGCATTCCAAATCCCATTGTTCTGTACGTGGAACCAACCCCCGTAGGGTACCTCTCTTGGATCT
GGCATTGAGTTTCTGACTGTCTGGCTAGGACGAGTGGCTATGATTAGCGCCAATGAGCACTGAGT
AGCTACACTGACTGCCTAGAGTTCTAGCTGCACTGACCAGAGCTTCATTCGTTCATTCATTAATG
CGCACCCCGGGTTCATCAACTGACAAGAGGTTCTAGGAATGACTG
Right flanking sequence: Indices 629962 -- 630461
GATCCACCTGCATTTCTCTTGTCGATCGATTCTACGAGCCCTTTTGGATCTCCTTCGGAGCAATT
TAGGAGGGAAAGTTCTCCGAACAATATATTGGCCCTATCAGCATCGATCATTTTTATTGATTGAG
AGTGTTTACTGCCTGGCCTGCCTTCTCTCTAACTCAACAGCCACGCAATGCAGCGGATGGCGTCC
AAGCACTTATATTGAGGTCGTCCCCGATTCTATCTCTACCGACCGGCTAGACAATGGCTAGACGT
GTGTGTGGCTAGATAGAGTTGGCTAGAACACGTGGCTAGACGTTAGGCTTTACGAAATCACTCGA
GAGCTGGTTGAAAACGAGACTTGACGAACTAACACTGGCTCAATGTCTTCAGGTGGGAACATGGG
AACTCACATAGAAGCCGTTCATCACTCACTGCACAAAGCCCTTCACAGAAAGCTGTTCACAGAAG
CCATTACAGCACACATAGAAGCGATGTCCCAGAATCCATCCGTGT
Found at i:631194 original size:13 final size:13
Alignment explanation
Indices: 631176--631202 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
631166 TTTAAGGTCA
631176 ACTAATGCTATAT
1 ACTAATGCTATAT
631189 ACTAATGCTATAT
1 ACTAATGCTATAT
631202 A
1 A
631203 TGGAATGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (13 bp):
ACTAATGCTATAT
Left flanking sequence: Indices 630676 -- 631175
AACTCTTTATTCAGTTCAGCCGGTATCTAGTAACTAAGCCAGCCAGCACCGAGACCGACACTAAG
CAAGTATCGAGCCAGACACCAAGACAACAAGTAAGCAACCAAACATACACTCCGCACCGAGCTAA
GAAAAGCATCTCACCCAAACCCAACAAGCCCAACTCACAACAGAGAACACCACCTGCAGTCAATA
TATACAGCACCCGGCACTTTGTAATATGGAATTTTTATTACCTGAGAGAACTGCTTCCGGGGCTA
CCTCTGTCATTGGTGGTTATGGGTCATCTCCTATAACTAGATCCGTATCGGCATCTCGATCTCGA
ACTATAGGATCTTAACCTGCCCCCTGGAATATTGTGCTTATACCTGTAGAGAGACTCGTTTCGTT
CTGTGCATGCTCCTACCTTTGCCCCTGCTTCTAGGTCAGTTGCATTTTGGGGACGAGGTAGTAGC
TATTTCAATTGCTATTGATTTGGATCTATTACTGGTTTAAGGTCA
Right flanking sequence: Indices 631203 -- 631702
TGGAATGGATCTTTTTCTACACCTGGGTAAGTAACTAAATTCCCCGTCCTACTAACTTCTGAGTC
AATGAAGTCAACCGGTTCTTTCTCTGCGGGGTGAACTTCACTTGGTCCTTAAGCTCCTACCTTTC
CCATTGCACCCGCCTCTGCTCCCATTGCCTCTGGTTCTAGGTAAATAGGATCAACGGGTTCTTAC
TCAAACCAGTTTAGTCAGTTAACTGTCCCTTCATCAGGAGGTTATGCATTTATATCTGTCTTTTA
TCAAATTTGGCGGTTGAAGGAGCTATATTCCCAACATCCCCTCCCCAGTTGAACCAGCCTTATTC
CCAGGATCAAAAGTCCCAGCCCAAGCATCACCAGCTCCATAAGCTGTTGTTGAAGGAGCACCAAT
TGAACGAGCATAATTACCGGAAAAAGCATTATTTGAACCAGTTGAACCGGTTTCCTCATTCCCAG
GATCATTTCCATAAGAAGAAGGAGCATTACGACCAACAACATCCC
Found at i:635986 original size:16 final size:16
Alignment explanation
Indices: 635962--636002 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
635952 AACGCTTCCC
*
635962 TCAATCAATCACTCCA
1 TCAATCAATCAATCCA
* *
635978 TCGATCAATCAATCCT
1 TCAATCAATCAATCCA
635994 TCAATCAAT
1 TCAATCAAT
636003 TCAGTCTGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.32, G:0.02, T:0.29
Consensus pattern (16 bp):
TCAATCAATCAATCCA
Left flanking sequence: Indices 635462 -- 635961
TAGTTAGTTAGACTCTCCAGAGCGACATTGAGGCTATTTAGTGCTCCCAGGAGATGCGAGTTAGT
TTTTCTCCCAGTCCGTCCCCTTGAGGCTATTGGTTCTTCCCCAGAGCCCAGATATCCCAGTTGAG
GCTAGTTAGTTGTTGTGATTCCCCAGAGGCAAGTGTATAGTTAGTTCTCATCCCCATAGCAAAGA
GAGAGTCTTCCCAGTGTGTGGAGTCCCAGTGTGTGAAAGAAGAAGAGTCCCCAGTGTGTAGTGTG
GAGTCCCGTCCCAGTCATTTCCTAGATAGTTAATATTTTTATCCCCAGAGCCCAGACATACCATT
TGAGGCTAGTTAGTTCTCTCTATTCATGATTATCCAGCCTAAGATGCGAGGTTGTTCCCATCTCT
TCCAATTCTTCATAATATGCAAGTATCACCTGTCTCCACCGAAAGCTACCCCATCACCGACACCT
CTGACATAACCTACATGTCCGACACCTCCGACAACAACGCTTCCC
Right flanking sequence: Indices 636003 -- 636502
TCAGTCTGGCTTTGTCAATCACTCAATGGCTCAATCAATGCTTCGTGAGGGCATGTAAGGCTTCC
TGAAAGCGTGGGATCATACCAAAGCATGGTGGTGTCCTGCTACGCCCCAGCTGGACATTTCATTA
CTACTTTAGGTCTCAGAACATAATCGTATCCTTACAGTTTGAACCCAGCCATGTTTGGGAAGCCA
TCATACCCTTACCCTGACAACTAACTGGTTTCACAAGCTTTAATGCTGACCCTTCCCTTTGTGCC
AGACCCCTTAATTGGGAAAGGCTTGCTTGAGTGGATGGAGTGGGCAGAACATCACTATTTAATTT
ACCCAACTTACCTTAAACTTATGCGCATGCTATCCACTTGGCGTCAACCCTTGATGGATTATATA
CTGGCTCACCTAACAGAACTGAACTTAGATATTGGATGCGCTTGCTTGGGCACTTTCAACTTCAC
TATTGCCACCTACTTTACAGATTTTCTCTTAGATGGACTGGCTTC
Found at i:641429 original size:18 final size:20
Alignment explanation
Indices: 641401--641441 Score: 68
Period size: 18 Copynumber: 2.1 Consensus size: 20
641391 AGCATATTGA
641401 GGGGAACAACATATCGAG-G
1 GGGGAACAACATATCGAGTG
641420 GGGGAA-AACATATCGAGTG
1 GGGGAACAACATATCGAGTG
641439 GGG
1 GGG
641442 CAATTCATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.34, C:0.12, G:0.41, T:0.12
Consensus pattern (20 bp):
GGGGAACAACATATCGAGTG
Left flanking sequence: Indices 640901 -- 641400
CAGAATGCTGAGGTACCGCTTGAGAAATAAAGACCACATCATTATTGCTTCTGGCTTCCCCGAAG
GAGTCACTAGCTTTTATTTCCCGGTGAATTCAAGTCCTCTTGCCTTAAGGAAGGGGAAGGATGGG
AACTCTAACTAGCCTAACGGGGGGGATTAGAGTCTCTTTCCTTCCAACCACCTTAAGAGAGAGCG
GGTAAGTAGCTCCAACAAGCCTAACGGGAGCTTGGGAATCACCAACCTGACCAGCCTAAAGGAGA
AGGGGAAGAATCAGAACTCCAAGCTAGCCTTACGGGGCAGACGGAGTCGCTATCCTTTCCACATC
CTTATCCTTAAGAGAGGGAAAGGGAAGCACTCTAACTAGCCTAACGGGGGAATTAGAGTCTCTTT
CCTTCTAGCCTGTTGATTAAACATCACTTTAATCGATGTGAGGTGATAGTTTATGCTCTTCGCCT
CGCTCGTAAGTTCTTGCTTCGCTTAGGTGGGGGGCAGCATATTGA
Right flanking sequence: Indices 641442 -- 641941
CAATTCATCTATACTTAATGTTTGGTTTTTAATGCTTGCTTTCAGGACTGGGTTTTGCTTTCATC
GCGACTTAATGGGCCAATAGGAGGGGGGAGCGGGTGAAAGGTCCTCGCAAAACGAGGAGGTCCTT
TTTCTTAGATATTTTTGGGGTACCTGGGGGTACCTGCCAGGAGGGAAAAAAGCTAACTCCGATAT
GAAGGATGAGCAGGTCCCTGATGGAAGGAAGAGGGGAGGGGGGGCTGGTTCGAACAAACTCTCAT
TTTGTTCCTTGCTCTCTCTTAGCAGCGGGAAAGGAGTCTATATTTCTGCCCAGCTCCGGCAGATC
TTCCCCAACGCAATCCACAAACTCCAATTCCACGAATCCCATCCTTGGTAGATAAGTCCGACGAC
TCAGCAGCAGTGCGGAAGGGAGTTTATAGCCCGGTGGATCTTCGGATCTATAGTTCTGACCGGGG
GAAGGGGCAATACATACCAAAAGGTTCGAAGGAGGAGCGCGCAGT
Found at i:642319 original size:17 final size:16
Alignment explanation
Indices: 642297--642334 Score: 67
Period size: 17 Copynumber: 2.3 Consensus size: 16
642287 ATATAATCTT
642297 AGCCATATTAACATATG
1 AGCCATATTAACATA-G
642314 AGCCATATTAACATAG
1 AGCCATATTAACATAG
642330 AGCCA
1 AGCCA
642335 CTCGATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.24
Consensus pattern (16 bp):
AGCCATATTAACATAG
Left flanking sequence: Indices 641797 -- 642296
CACGAATCCCATCCTTGGTAGATAAGTCCGACGACTCAGCAGCAGTGCGGAAGGGAGTTTATAGC
CCGGTGGATCTTCGGATCTATAGTTCTGACCGGGGGAAGGGGCAATACATACCAAAAGGTTCGAA
GGAGGAGCGCGCAGTCTCTCACCAACCATGGAGTCTCATCCAATCTGTTTCTAATGCGAGCTTCG
GATCTATAGTTCTCCCGTGTGCTTCCCGTTGAATTTGCACCAGTTCGCGGTTCAACCTTTCCTGA
GTGGAGCGGGCCCCTATATACCATGCATGAGTGCGAAAGCCAGGGTCGTTCCACTCGTGAGTTGT
GCTATGCAAGAAGTTGCATCTCTCCCGCCCTGTGTATGCCTGTTCAAAGTGCTTTGATGGCGCTT
AGAACGCGGCGAAACAAGTGACGAGGTCCAAGTTCAGATTTTATCTTCACTGACGGTACGGGAGG
GGGTGTAGTGAACGAACAGTACGAGTAGCTAACCTATATAATCTT
Right flanking sequence: Indices 642335 -- 642834
CTCGATAAATCCCATCCACTTGTAAATTCTTGGTGTAATAATTACCTGGCAACCCATCTTCGGTA
CTTAAAGAATAGAAAGGCTCCTGCTATCAACTACGTCTTAAGATTGTTAGATATACCTGCCTGCC
CTTCCTCTCGTCTAGCAGTATAAATAATACCTTCCTTGCCCTCCTACCTAAGAGCAAGCCATCCT
TCCTTGTATTAAATAACTATTTACCTTTCAGTAGTATTAGCGGATCAGCCAAAATATTAAGTTGG
GTAGGGTGAGATCGACTAGATGGCGGTATAGATAGAATCCTAGGTATGGCTAGATCTCTATTATC
TACGTATTAACAACAGTCTGGTTCATATAGCTGGAAAAGTGAGCTTTATAACAGGGGGCTATTTC
CAATGGGAACACTTGCGCGCATGATTTCAGGAGGTGTTTACAGAGTGAATCGACTGCAGACTTTA
AGGGCTGGATCTGAAATGAACTTCACCCTTCCCTCTTACTTATTA
Found at i:650310 original size:15 final size:15
Alignment explanation
Indices: 650286--650316 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
650276 ATTTCAATAG
*
650286 GCCTTTTTCTTCATA
1 GCCTTCTTCTTCATA
650301 GCCTTCTTCTTCATA
1 GCCTTCTTCTTCATA
650316 G
1 G
650317 ATAAATCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.29, G:0.10, T:0.48
Consensus pattern (15 bp):
GCCTTCTTCTTCATA
Left flanking sequence: Indices 649786 -- 650285
TAACCAGACAGCGAGTCAATGGAATAGCTACCGCTGCCTGTGTTCAGTTGAGGAAAGATTATAAA
CACTATCATTACTCGCGAAGCAAGCTAGCCTGATAGCCGGCACTAAAGGAGAACCTTTAACTAGC
CAAGGGAGTCAGAAGGTTCCACTAGTCCTCATCTTCTTAATCATAAAGACTTTCTAACTAGATAG
TCTAACTAGCTATTAAGGCACTAAAGTAAAGGGACATTCACTCACCTAAAAGTATAAGACTTAGG
GAAATGGACCTGTTTCTCTCTCTCTCTCATTTGCTCCTCCCGATTGACTCCCTCTGCTTCAACAT
CGAAAAGGATATCAATGCTGGGTTAGGAGGGTAAGGGATTTGGTTGGTTGATCGTTTGGTTGTTT
CACTGGAATGTTGAGCCATGATCACTTACTCGACCAAGGTCGCTGAGGCCTCGAGGGGTGTTTCC
CAGGACTTACGCGACTGAAACTCAACAAGCTGACTATTTCAATAG
Right flanking sequence: Indices 650317 -- 650816
ATAAATCATTTTGGTTGAATGAAATCTGGAGAGAAAGAAAGTCTCTACCGTTTTAAACTAAGTCA
TGGACTAAGAGATAGAATCGGTAAATCTAGGGACAAGGTAAACGTCTATATGCGACATCATATAT
TATGAGGTTGTAGTAGCAAGAAAAAAGTAGAATTGAATAGACTTTAGAATGGGACTAAGGCAAGA
AGACCTTATTAAGGCAGTCAGTCCAGAAAGACCAGTTCTGGCACTACAGCTTAATATATTATGGC
TGAACGGAAATGGCTTGTCGATTAGGTTCGGCTATGTATGGCGAAGCCTGCACAGGTTAGGTTTC
CGAGGTGTGTCTTTTCCTATTTTCAAAGGAGAGGGGCTTTAGCCACTCGACCGATAGGGAGAGGA
GACAACCTATAGATTATTTTTAGCTCTTCTAATACTATGTACCATTGACTGTGGAGGTCTGTAAC
CCCTTATTAGGTCTGGACACTGGAGGCCTGCAATTTGATGAGGTC
Found at i:659969 original size:20 final size:20
Alignment explanation
Indices: 659944--659983 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
659934 TCCGAAAGCA
659944 TAGCTGGCCATTGACTAGAT
1 TAGCTGGCCATTGACTAGAT
659964 TAGCTGGCCATTGACTAGAT
1 TAGCTGGCCATTGACTAGAT
659984 GCTGGACCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (20 bp):
TAGCTGGCCATTGACTAGAT
Left flanking sequence: Indices 659444 -- 659943
GTTGCTGTATTATTGGGTTCCCTCCGGGAAAGAAAGTTCCTACCACACCCCCGGTTGAGCCAATG
AGCCTAAGCTGTAACTCCCACACCGGGGGTGAAGGAGAGCGGGTTGAGCCAATGAGCAGGCAGGT
TGAGCCAATGAGACCTCCCACACCCCCCGGACGACTAATAGCTGGACCGGTAGAATTCAATTACT
GAACTGTCCTTACCGGATAAACAATCTCCTCCGTTAACGATCTAGCGCCATTCTTTCTTTCATCA
CGAGCATCTCCTCATCCGCCCCCCAACCTAATCCACCCGAATTCAAGTTGCTAATCTGTTTGTTT
CTTTCCATCGGTGAGAAAAGAAAGTATACGCTCCTCCAACCAGTAAGTTAACAATCCAACCCGGG
GGTGAAGTGATGGCCTTCCCTTGAGCCGGGGGCACCTTCCTCCTTCTGGCCGGCGGGTAAGAGCT
AAGCTCCTGTTTTATTGTGGGGGTGTATTAGCTCATCCGAAAGCA
Right flanking sequence: Indices 659984 -- 660483
GCTGGACCATCCTTGTTAACCTCCATCCGGGCCATCCTTTCTTTACCCTTCGCCAGTTGAGCCTT
CCTTCCGGCCAATAAAAAACACATTATAGAAAGGTGGGAACTAATATGGGAAATTCTAGTCCAAC
AACTGGATGGATCAACTGCGGCTGGTGGCAAGGATGGTCAGTTAGGCCTTCCGGTTGCCGATTAG
AAATTAGTTCTCTCTCTCAACTGAAGGGTTTAGTTCTCTGGTCCTCCGTCCTGTTAAAGGCTTAT
AGATTTTACTCTATAGTGTGCTTTTTTAGATATTGTACTTTGATAGATAGAATAGCCCGCCCATG
ATAAGTGGAAATAAAATAAAGGTTGAGACCGTGAGACCCCGTGAGACCGTGATACCGGCGGAAAG
AAAGGTGGAAAGAAGTGCAGTGGAAAGAAAAGACCGTGAGACCGTGAGGTAGTCTTGAGCCATAT
GCCCATATAAGCCCGTAAATGAGCCCGTAGTATTGAGCCCTTAGT
Found at i:661022 original size:15 final size:15
Alignment explanation
Indices: 661002--661049 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
660992 ATGGTGGGTG
661002 CCAGGAAAGGTATGC
1 CCAGGAAAGGTATGC
*
661017 CCAGGAAAAGTATGC
1 CCAGGAAAGGTATGC
**
661032 CGGGGAAAGGTATGC
1 CCAGGAAAGGTATGC
661047 CCA
1 CCA
661050 CACTCACAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.33, T:0.12
Consensus pattern (15 bp):
CCAGGAAAGGTATGC
Left flanking sequence: Indices 660502 -- 661001
GTCTTGAGCCCCTATAAGTAGTGAAGCCGGTACCTCCATTCCTCTATTAAGGTAATGTGCGGTAA
TGAAAGGTTATGTCCCAATCTGTATAGCCAGAGCCTGTAGTTTTAAGCCCGTATAAGTACCATCA
GAAATACGAAGGAATCATCCCACCAGAAAGAAATGTGGATATCGAGAAATAAGGAAGGAATCATC
CCACCAGCAGTGGAAAGACATAGATCGATCAATATCCAGAAATACCTTCATACGTTCGCCATCTT
TCTAGTGAAAGCGCCTAACCATCCATCCATCAAACCATCCATCCATATTCCCTTCTGAAACACGC
CATCAATCAATCAATCCATCAAACCATCTTAATCTATTATTAAGTGATCTGTATCAATCTGTATC
CTTCCCTTAAAGTCATTCTTTATATAAGTAATTACGCTTCAAATATTTCAGCAGTGGCATAGGCA
GTGGCAGTAGCGGTCTTCCTCAGCAGAGATAGATAATGGTGGGTG
Right flanking sequence: Indices 661050 -- 661549
CACTCACAAGGAAAGATACAGACACTAACACAAACACTCGGGCTAACGGGAGCTCTCCAACATAT
AGTATTGCGACCGATGCCTACATTTGCCTACACTTGCATGCCTACACTTGTCTACAATTGATTAT
TTACCTAATATACCTAATTTACCTAAAGCATAATTTACCAGAGTACAGACATATGGAGTAAGGTA
TAAACTATTTAGCTATGGATACGCCCCGCAATAAAAAGAAACGATGGATAAGGACTGAGACTGAA
CGTGAGATAGATAACACCTGACCTTACGACCTGACCTCGCAGCGAATAGATTACTAACGATACGA
CCTTATGACTAGCAGGAAGGATATTCTCTCGACCGTAGATTACGACCTTAAACACGCGGTCTTTT
GGGGATTCTTTTTTAGGGGGGGGTGCAGTATAGCTGACATTTGCTACTACTCTTGCTACTGCTGA
CTATTGCTACTACTAATGATATTATAAGGAAAAGGAAATACATCC
Found at i:662290 original size:13 final size:13
Alignment explanation
Indices: 662272--662296 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
662262 AAGGAAGGAT
662272 ATTTATTATTGAG
1 ATTTATTATTGAG
662285 ATTTATTATTGA
1 ATTTATTATTGA
662297 TTCATTAGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
ATTTATTATTGAG
Left flanking sequence: Indices 661772 -- 662271
CATTCCCAGGCACATGAGTTACAGGGATTATACTTTCCTCACTTTCCCGAAGGGCCATATGAGCT
CTACTTCATTATCTACCTTGTCCAAGAGACCGAGCGTCTTTGCGACCGAAGGGAGCAGTAGATTC
GTTCATATGCCACCGGCAGGGAGCACCTCCTCTGCTGCTATGGATAGGTTATCTCCGGCTGCTGC
TGCTCTTGCTGCTGCTAATAGACGGGTTGGTTAGAACGATGGTTAGAACGACTGAATAAGCCTAC
TTATGTCTTATTCGTATCTTCTCTATAGGAATACCGCTCGGCATTAGGCGGTCTGGTGGGGTTGG
TATGGTGGGGCTTGCTTGATGGAAAATAAGTGAAAGTGGATGGTTATTGAAATCAATGGAAAGTT
TTAGTCCCTAGAATAGGAGTGAAATCCAGCGTTACATGATATGACTAGCTCCCCAGTGACCAGTC
TGTTTCAAGGTCTTCGGTAAGCTTTCGTAAAGCTAAAGGAAGGAT
Right flanking sequence: Indices 662297 -- 662796
TTCATTAGGCATGGTTTAGTTACCTCTGTTCCCTTCCTTTGAGATAGATGGATATAAATATATAT
GGATAGAGATGGATATAGATGGATATAGCCGGATATAGACGGTCGCCATCCGAGAAGCGTGGTAC
CGAGAAGCGTGGTACCATGAACGATATTGATATAGATAGGTTCTACCCGCAGAGGTGTTCTCCTC
GATTGGGTCATGCTTCTATCTGGCATGGTCAAGGCTCGCTTGCTGGCATGGTCAAGGCTCGCTTG
CTGGCGTGGGCTTACCCGCCTCATGAACCGCTGTGGCATTGGGTTACCCGCTCTTGTTGTGGGGT
TACCCGCGAGTTCCCATCCTTCATTCTCCCCTAGTGATTCGCGCAGCTCTCTTGGGTTACCAGCC
TTAGATAAGGAAAGAAAGGAGACTTACTTACCTATGCTAAACACTGTTGCCTGGGGCTCGGGCTT
GAACCCGTACCTACAAGCCATAGTTATTGGGCTTGATCCTGACCT
Found at i:662387 original size:10 final size:10
Alignment explanation
Indices: 662354--662400 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
662344 ATGGATATAA
*
662354 ATATATATGG
1 ATATAGATGG
*
662364 ATAGAGATGG
1 ATATAGATGG
662374 ATATAGATGG
1 ATATAGATGG
**
662384 ATATAGCCGG
1 ATATAGATGG
662394 ATATAGA
1 ATATAGA
662401 CGGTCGCCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28
Consensus pattern (10 bp):
ATATAGATGG
Left flanking sequence: Indices 661854 -- 662353
TTGTCCAAGAGACCGAGCGTCTTTGCGACCGAAGGGAGCAGTAGATTCGTTCATATGCCACCGGC
AGGGAGCACCTCCTCTGCTGCTATGGATAGGTTATCTCCGGCTGCTGCTGCTCTTGCTGCTGCTA
ATAGACGGGTTGGTTAGAACGATGGTTAGAACGACTGAATAAGCCTACTTATGTCTTATTCGTAT
CTTCTCTATAGGAATACCGCTCGGCATTAGGCGGTCTGGTGGGGTTGGTATGGTGGGGCTTGCTT
GATGGAAAATAAGTGAAAGTGGATGGTTATTGAAATCAATGGAAAGTTTTAGTCCCTAGAATAGG
AGTGAAATCCAGCGTTACATGATATGACTAGCTCCCCAGTGACCAGTCTGTTTCAAGGTCTTCGG
TAAGCTTTCGTAAAGCTAAAGGAAGGATATTTATTATTGAGATTTATTATTGATTCATTAGGCAT
GGTTTAGTTACCTCTGTTCCCTTCCTTTGAGATAGATGGATATAA
Right flanking sequence: Indices 662401 -- 662900
CGGTCGCCATCCGAGAAGCGTGGTACCGAGAAGCGTGGTACCATGAACGATATTGATATAGATAG
GTTCTACCCGCAGAGGTGTTCTCCTCGATTGGGTCATGCTTCTATCTGGCATGGTCAAGGCTCGC
TTGCTGGCATGGTCAAGGCTCGCTTGCTGGCGTGGGCTTACCCGCCTCATGAACCGCTGTGGCAT
TGGGTTACCCGCTCTTGTTGTGGGGTTACCCGCGAGTTCCCATCCTTCATTCTCCCCTAGTGATT
CGCGCAGCTCTCTTGGGTTACCAGCCTTAGATAAGGAAAGAAAGGAGACTTACTTACCTATGCTA
AACACTGTTGCCTGGGGCTCGGGCTTGAACCCGTACCTACAAGCCATAGTTATTGGGCTTGATCC
TGACCTCGCCCGACTTCGTGCTAGTTGAGTTGGGCTGCATCCTGCAAGCTGGAAGCGGGATAGAT
TGTGAAAGCTGAAAGCGGGAAGCTAAAAGCTGGAAGCTTAAAGCT
Found at i:662431 original size:15 final size:15
Alignment explanation
Indices: 662411--662442 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
662401 CGGTCGCCAT
662411 CCGAGAAGCGTGGTA
1 CCGAGAAGCGTGGTA
662426 CCGAGAAGCGTGGTA
1 CCGAGAAGCGTGGTA
662441 CC
1 CC
662443 ATGAACGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.25, G:0.38, T:0.12
Consensus pattern (15 bp):
CCGAGAAGCGTGGTA
Left flanking sequence: Indices 661911 -- 662410
CCACCGGCAGGGAGCACCTCCTCTGCTGCTATGGATAGGTTATCTCCGGCTGCTGCTGCTCTTGC
TGCTGCTAATAGACGGGTTGGTTAGAACGATGGTTAGAACGACTGAATAAGCCTACTTATGTCTT
ATTCGTATCTTCTCTATAGGAATACCGCTCGGCATTAGGCGGTCTGGTGGGGTTGGTATGGTGGG
GCTTGCTTGATGGAAAATAAGTGAAAGTGGATGGTTATTGAAATCAATGGAAAGTTTTAGTCCCT
AGAATAGGAGTGAAATCCAGCGTTACATGATATGACTAGCTCCCCAGTGACCAGTCTGTTTCAAG
GTCTTCGGTAAGCTTTCGTAAAGCTAAAGGAAGGATATTTATTATTGAGATTTATTATTGATTCA
TTAGGCATGGTTTAGTTACCTCTGTTCCCTTCCTTTGAGATAGATGGATATAAATATATATGGAT
AGAGATGGATATAGATGGATATAGCCGGATATAGACGGTCGCCAT
Right flanking sequence: Indices 662443 -- 662942
ATGAACGATATTGATATAGATAGGTTCTACCCGCAGAGGTGTTCTCCTCGATTGGGTCATGCTTC
TATCTGGCATGGTCAAGGCTCGCTTGCTGGCATGGTCAAGGCTCGCTTGCTGGCGTGGGCTTACC
CGCCTCATGAACCGCTGTGGCATTGGGTTACCCGCTCTTGTTGTGGGGTTACCCGCGAGTTCCCA
TCCTTCATTCTCCCCTAGTGATTCGCGCAGCTCTCTTGGGTTACCAGCCTTAGATAAGGAAAGAA
AGGAGACTTACTTACCTATGCTAAACACTGTTGCCTGGGGCTCGGGCTTGAACCCGTACCTACAA
GCCATAGTTATTGGGCTTGATCCTGACCTCGCCCGACTTCGTGCTAGTTGAGTTGGGCTGCATCC
TGCAAGCTGGAAGCGGGATAGATTGTGAAAGCTGAAAGCGGGAAGCTAAAAGCTGGAAGCTTAAA
GCTGGAAGCGGGATAGAGATAGTGTAGTGTTACCGACCAAAAGGA
Found at i:662538 original size:23 final size:23
Alignment explanation
Indices: 662511--662561 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
662501 ATGCTTCTAT
662511 CTGGCATGGTCAAGGCTCGCTTG
1 CTGGCATGGTCAAGGCTCGCTTG
662534 CTGGCATGGTCAAGGCTCGCTTG
1 CTGGCATGGTCAAGGCTCGCTTG
662557 CTGGC
1 CTGGC
662562 GTGGGCTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.12, C:0.27, G:0.35, T:0.25
Consensus pattern (23 bp):
CTGGCATGGTCAAGGCTCGCTTG
Left flanking sequence: Indices 662011 -- 662510
AGAACGACTGAATAAGCCTACTTATGTCTTATTCGTATCTTCTCTATAGGAATACCGCTCGGCAT
TAGGCGGTCTGGTGGGGTTGGTATGGTGGGGCTTGCTTGATGGAAAATAAGTGAAAGTGGATGGT
TATTGAAATCAATGGAAAGTTTTAGTCCCTAGAATAGGAGTGAAATCCAGCGTTACATGATATGA
CTAGCTCCCCAGTGACCAGTCTGTTTCAAGGTCTTCGGTAAGCTTTCGTAAAGCTAAAGGAAGGA
TATTTATTATTGAGATTTATTATTGATTCATTAGGCATGGTTTAGTTACCTCTGTTCCCTTCCTT
TGAGATAGATGGATATAAATATATATGGATAGAGATGGATATAGATGGATATAGCCGGATATAGA
CGGTCGCCATCCGAGAAGCGTGGTACCGAGAAGCGTGGTACCATGAACGATATTGATATAGATAG
GTTCTACCCGCAGAGGTGTTCTCCTCGATTGGGTCATGCTTCTAT
Right flanking sequence: Indices 662562 -- 663061
GTGGGCTTACCCGCCTCATGAACCGCTGTGGCATTGGGTTACCCGCTCTTGTTGTGGGGTTACCC
GCGAGTTCCCATCCTTCATTCTCCCCTAGTGATTCGCGCAGCTCTCTTGGGTTACCAGCCTTAGA
TAAGGAAAGAAAGGAGACTTACTTACCTATGCTAAACACTGTTGCCTGGGGCTCGGGCTTGAACC
CGTACCTACAAGCCATAGTTATTGGGCTTGATCCTGACCTCGCCCGACTTCGTGCTAGTTGAGTT
GGGCTGCATCCTGCAAGCTGGAAGCGGGATAGATTGTGAAAGCTGAAAGCGGGAAGCTAAAAGCT
GGAAGCTTAAAGCTGGAAGCGGGATAGAGATAGTGTAGTGTTACCGACCAAAAGGAGGGATTTAC
TTTGACCGAACGAAGATAAATAGCCAATGAAATGAAATGGTGCCGACCAAAGAAAGGAAAGGTAT
CAGATCGGATAGTAAGTAGTGCCGGGAAGAATAAACTGTGCGAAG
Found at i:662884 original size:14 final size:14
Alignment explanation
Indices: 662861--662906 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
662851 TAGATTGTGA
* *
662861 AAGCTGAAAGCGGG
1 AAGCTAAAAGCTGG
662875 AAGCTAAAAGCTGG
1 AAGCTAAAAGCTGG
*
662889 AAGCTTAAAGCTGG
1 AAGCTAAAAGCTGG
662903 AAGC
1 AAGC
662907 GGGATAGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.39, C:0.15, G:0.33, T:0.13
Consensus pattern (14 bp):
AAGCTAAAAGCTGG
Left flanking sequence: Indices 662361 -- 662860
TGGATAGAGATGGATATAGATGGATATAGCCGGATATAGACGGTCGCCATCCGAGAAGCGTGGTA
CCGAGAAGCGTGGTACCATGAACGATATTGATATAGATAGGTTCTACCCGCAGAGGTGTTCTCCT
CGATTGGGTCATGCTTCTATCTGGCATGGTCAAGGCTCGCTTGCTGGCATGGTCAAGGCTCGCTT
GCTGGCGTGGGCTTACCCGCCTCATGAACCGCTGTGGCATTGGGTTACCCGCTCTTGTTGTGGGG
TTACCCGCGAGTTCCCATCCTTCATTCTCCCCTAGTGATTCGCGCAGCTCTCTTGGGTTACCAGC
CTTAGATAAGGAAAGAAAGGAGACTTACTTACCTATGCTAAACACTGTTGCCTGGGGCTCGGGCT
TGAACCCGTACCTACAAGCCATAGTTATTGGGCTTGATCCTGACCTCGCCCGACTTCGTGCTAGT
TGAGTTGGGCTGCATCCTGCAAGCTGGAAGCGGGATAGATTGTGA
Right flanking sequence: Indices 662907 -- 663406
GGGATAGAGATAGTGTAGTGTTACCGACCAAAAGGAGGGATTTACTTTGACCGAACGAAGATAAA
TAGCCAATGAAATGAAATGGTGCCGACCAAAGAAAGGAAAGGTATCAGATCGGATAGTAAGTAGT
GCCGGGAAGAATAAACTGTGCGAAGGCTCAACCTCGTCTAGTGCTGCTACTTCCTTGGAATGAGA
CTGATTGAGACTGGGAAGATACTGTGCAAAGATAAACCTGGTCTACACGGAAGTTGTCCCATACA
AATGAAAGGGTCTAAACCGATGTTGTACAAGCAAACTGGTATAACCGAACCTTAAGCTCTTGAAA
CTACGAGGTACGAGGTGAAACATTGTCTCGTGTGAACTGAAACCTCGTATCGTACCTATTGCCCC
GTCAAAGTGGTGGATGTTGTACAAGCAAACAAGAAGTGGTATAAGCCATCAAAGCCAACCTGTGT
GTGCTAGCTGAACCTCGTATCGTGCTGCTTCTCTCGCTAGCTGGC
Found at i:663446 original size:17 final size:18
Alignment explanation
Indices: 663424--663472 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
663414 GCTGGTACTA
*
663424 CCTTGCTT-TAGAACTTC
1 CCTTGCTTATAAAACTTC
663441 CCTTGCTTGATAAAACTTC
1 CCTTGCTT-ATAAAACTTC
663460 CCTTGCTTGATAA
1 CCTTGCTT-ATAA
663473 CTATAAGCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 8 0.28
19 21 0.72
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (18 bp):
CCTTGCTTATAAAACTTC
Left flanking sequence: Indices 662924 -- 663423
GTGTTACCGACCAAAAGGAGGGATTTACTTTGACCGAACGAAGATAAATAGCCAATGAAATGAAA
TGGTGCCGACCAAAGAAAGGAAAGGTATCAGATCGGATAGTAAGTAGTGCCGGGAAGAATAAACT
GTGCGAAGGCTCAACCTCGTCTAGTGCTGCTACTTCCTTGGAATGAGACTGATTGAGACTGGGAA
GATACTGTGCAAAGATAAACCTGGTCTACACGGAAGTTGTCCCATACAAATGAAAGGGTCTAAAC
CGATGTTGTACAAGCAAACTGGTATAACCGAACCTTAAGCTCTTGAAACTACGAGGTACGAGGTG
AAACATTGTCTCGTGTGAACTGAAACCTCGTATCGTACCTATTGCCCCGTCAAAGTGGTGGATGT
TGTACAAGCAAACAAGAAGTGGTATAAGCCATCAAAGCCAACCTGTGTGTGCTAGCTGAACCTCG
TATCGTGCTGCTTCTCTCGCTAGCTGGCTCTATAGGCTGGTACTA
Right flanking sequence: Indices 663473 -- 663972
CTATAAGCTTAACCTCGCTAGCGGGATCTACTTCACGGGGAATAAGCTCTCGAACCAAGAGTTAT
CACTGGAACAAGATACTCGCTCACCAAAGCAATAACTCACCGAGGTCTTCAACCCTTACAGCAAC
TATCAGAACAATAATTATCTTACCAATCTCAACAGCCAAGCATCCTAACCTGCCTCTACTAACTG
ATTCTAAAACTGAACCATGAGTACTCCCTAGCGGGAGGAGGAAATAAGTCAAGGTGTAGCCAATT
CACTTATACTGCGCTAGCTGAACCTGGTCTAACACGATGGTGTACAAATGATATGGTCTACCCCA
TCGATGGCACACGAACCAATAGCTAATCACTGGGAATTTGATACCTTTCAGCCACTTATCGGGCA
TTCTCCTTCATAAAATAGAGCCTATCCTTACTTACTCCCTTTGGGCAGGACCTACCTAGAAATCA
GATAGGAAATTCCCTCCCTTATAGATATAGATATTGACATAGATA
Found at i:663459 original size:19 final size:19
Alignment explanation
Indices: 663435--663472 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
663425 CTTGCTTTAG
663435 AACTTCCCTTGCTTGATAA
1 AACTTCCCTTGCTTGATAA
663454 AACTTCCCTTGCTTGATAA
1 AACTTCCCTTGCTTGATAA
663473 CTATAAGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (19 bp):
AACTTCCCTTGCTTGATAA
Left flanking sequence: Indices 662935 -- 663434
CAAAAGGAGGGATTTACTTTGACCGAACGAAGATAAATAGCCAATGAAATGAAATGGTGCCGACC
AAAGAAAGGAAAGGTATCAGATCGGATAGTAAGTAGTGCCGGGAAGAATAAACTGTGCGAAGGCT
CAACCTCGTCTAGTGCTGCTACTTCCTTGGAATGAGACTGATTGAGACTGGGAAGATACTGTGCA
AAGATAAACCTGGTCTACACGGAAGTTGTCCCATACAAATGAAAGGGTCTAAACCGATGTTGTAC
AAGCAAACTGGTATAACCGAACCTTAAGCTCTTGAAACTACGAGGTACGAGGTGAAACATTGTCT
CGTGTGAACTGAAACCTCGTATCGTACCTATTGCCCCGTCAAAGTGGTGGATGTTGTACAAGCAA
ACAAGAAGTGGTATAAGCCATCAAAGCCAACCTGTGTGTGCTAGCTGAACCTCGTATCGTGCTGC
TTCTCTCGCTAGCTGGCTCTATAGGCTGGTACTACCTTGCTTTAG
Right flanking sequence: Indices 663473 -- 663972
CTATAAGCTTAACCTCGCTAGCGGGATCTACTTCACGGGGAATAAGCTCTCGAACCAAGAGTTAT
CACTGGAACAAGATACTCGCTCACCAAAGCAATAACTCACCGAGGTCTTCAACCCTTACAGCAAC
TATCAGAACAATAATTATCTTACCAATCTCAACAGCCAAGCATCCTAACCTGCCTCTACTAACTG
ATTCTAAAACTGAACCATGAGTACTCCCTAGCGGGAGGAGGAAATAAGTCAAGGTGTAGCCAATT
CACTTATACTGCGCTAGCTGAACCTGGTCTAACACGATGGTGTACAAATGATATGGTCTACCCCA
TCGATGGCACACGAACCAATAGCTAATCACTGGGAATTTGATACCTTTCAGCCACTTATCGGGCA
TTCTCCTTCATAAAATAGAGCCTATCCTTACTTACTCCCTTTGGGCAGGACCTACCTAGAAATCA
GATAGGAAATTCCCTCCCTTATAGATATAGATATTGACATAGATA
Found at i:675645 original size:19 final size:19
Alignment explanation
Indices: 675618--675659 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
675608 ATGCCGCGAC
675618 CCGACTGAGCAGATCCGAT
1 CCGACTGAGCAGATCCGAT
* *
675637 CCGATTGAGCAGATTCGAT
1 CCGACTGAGCAGATCCGAT
675656 CCGA
1 CCGA
675660 GAAGCATCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (19 bp):
CCGACTGAGCAGATCCGAT
Left flanking sequence: Indices 675118 -- 675617
GCTGGACGATATGGGGTTGTACGGTAACAAGAGACTCCTAATCAGACTAATCTGGATAATCCTAA
TTAAGGATGAGAACAACCCAAAATACTTTCCGGGTTGGGTAAAGCAACCCAATAATAAAAGAGTG
AATCCAGCTCCTAAGGTTTCAAAGAGTTAAGGCCATGCTCTTGCTTGTTTGGATGACCTCAGGCC
CCCTTGTATTATTGAAAAGTTCCAAACTAGCAATAAAATCATCGTTCAAAAGCATGTCAATGTTC
AAAAAGGTAGAATCTATTATTAATGGATCTCAAATGCTGCGATTCCTGCGCATTTCTTTATAAAA
GGATAGGCCTTTCCGAAATTCAACTGAGGTCTGTAGCTCGTTAAAATGCATGCTAGGAGCCTCTC
CTTTCTGGATTGGAGGATTGGAGACTTGCGCCCTGCCCTGTCTGCCCATAATTATTTCCTGCTGT
TTGTCCTGCTATGCGCGATACCATTTTCATATCCGATGCCGCGAC
Right flanking sequence: Indices 675660 -- 676159
GAAGCATCTCGAGCCACCCAATCCGAGCAGAGCTGCACCGTTGCAGAGTCAAGCAATTTTAATCT
GGTCTGCAGGGGGACAACAAGATGGAGTTAAATGGGATGGACGGGAGAGATGGACGGAAGAGATG
GACGGAAGAGACTCCTAATCAGAATTAAGTAGATGGTTCAGAATTATCTGGCTGGACGGTGGCTG
GACGTTAAAAAGAGACTCCTAATTATACTAATTTGGGCGGGAAAACCCCAACAAGATCTGATTGG
ACCGATAAACCCCAACTACTGAATAAGTAGGGGAAGATCCAGTTGTTGTTGACCCACCGACATCT
GAGCCGGTTCGAGAGCCTGTCCCAGAGCTACATTTATATATTATGTATTGGAAGCGGCATAACGC
ATTGTTAACCTTAAGAGTCCCATTGTTTCCCTTATTAGTAAATGAGCACCAGCGTGGGCAAAGAC
AAAGTAATCATCCTTTTATCCCATTCGAGCCCTATGGATAAGCGG
Found at i:675778 original size:13 final size:13
Alignment explanation
Indices: 675760--675800 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
675750 AGTTAAATGG
*
675760 GATGGACGGGAGA
1 GATGGACGGAAGA
675773 GATGGACGGAAGA
1 GATGGACGGAAGA
675786 GATGGACGGAAGA
1 GATGGACGGAAGA
675799 GA
1 GA
675801 CTCCTAATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.49, T:0.07
Consensus pattern (13 bp):
GATGGACGGAAGA
Left flanking sequence: Indices 675260 -- 675759
AAGGTTTCAAAGAGTTAAGGCCATGCTCTTGCTTGTTTGGATGACCTCAGGCCCCCTTGTATTAT
TGAAAAGTTCCAAACTAGCAATAAAATCATCGTTCAAAAGCATGTCAATGTTCAAAAAGGTAGAA
TCTATTATTAATGGATCTCAAATGCTGCGATTCCTGCGCATTTCTTTATAAAAGGATAGGCCTTT
CCGAAATTCAACTGAGGTCTGTAGCTCGTTAAAATGCATGCTAGGAGCCTCTCCTTTCTGGATTG
GAGGATTGGAGACTTGCGCCCTGCCCTGTCTGCCCATAATTATTTCCTGCTGTTTGTCCTGCTAT
GCGCGATACCATTTTCATATCCGATGCCGCGACCCGACTGAGCAGATCCGATCCGATTGAGCAGA
TTCGATCCGAGAAGCATCTCGAGCCACCCAATCCGAGCAGAGCTGCACCGTTGCAGAGTCAAGCA
ATTTTAATCTGGTCTGCAGGGGGACAACAAGATGGAGTTAAATGG
Right flanking sequence: Indices 675801 -- 676300
CTCCTAATCAGAATTAAGTAGATGGTTCAGAATTATCTGGCTGGACGGTGGCTGGACGTTAAAAA
GAGACTCCTAATTATACTAATTTGGGCGGGAAAACCCCAACAAGATCTGATTGGACCGATAAACC
CCAACTACTGAATAAGTAGGGGAAGATCCAGTTGTTGTTGACCCACCGACATCTGAGCCGGTTCG
AGAGCCTGTCCCAGAGCTACATTTATATATTATGTATTGGAAGCGGCATAACGCATTGTTAACCT
TAAGAGTCCCATTGTTTCCCTTATTAGTAAATGAGCACCAGCGTGGGCAAAGACAAAGTAATCAT
CCTTTTATCCCATTCGAGCCCTATGGATAAGCGGGGTTTATTTGGTGGAACCCGTCGATCTATAA
CCACCAATGGCGAAGTGAGCCGTGTAAGCAGCGGGAGTAAAGGGGAGGGACCAGCGGTAGAGAAA
GCAGCAGAGAAAGGGGCAGGAGCAACGAGAAAGGAGGGAGTTAAA
Found at i:679582 original size:19 final size:19
Alignment explanation
Indices: 679558--679601 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
679548 TAACACAGAC
679558 TAGAGCTTCATGCACTGAG
1 TAGAGCTTCATGCACTGAG
679577 TAGAGCTTCATGCACTGAG
1 TAGAGCTTCATGCACTGAG
679596 TAGAGC
1 TAGAGC
679602 CTCTTTCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (19 bp):
TAGAGCTTCATGCACTGAG
Left flanking sequence: Indices 679058 -- 679557
TGAATCCATAAGGTAGTTCCCACGGATCCCACGACTGGTTGTTGTTCCTGTGCCACCCACCACTT
CCATTAATCCAGTAGGTAGGCTTTTTCCCAGATCCTCTTTCCCCCTCCCTCCATAAATCCTGCTG
AATCCGGGTGTTTAAGTTCGTGGATCCTGGCAGCACTAAATGTGCCTCGCCCTAAGAAACTAAGG
CACGAATGTGGTTCAAAATCCTATCCATAAGTAAGTTTATAAAGAAGATCCCTTAAGAAAAGGGA
TAGGTTCTGGGACCGAACTGGGTAAGGTTCTGTCAGTCAGCATTAAAGCTTGCAGTACTTTCAGA
GTAAGGAGGGAGTACGTTTCAGCATTCCCACTTATAATCACTTCCGGTACTGGCAGGGGCAATTT
ACCTACCATGTTATCTATCAACCGATCGAAGCTCGAACAAGGGTCGAGGGTCTATGTAGAGGGCC
GAGGTGGAGGGCCGTGGTTGCTATGGAAATGACCTTAACACAGAC
Right flanking sequence: Indices 679602 -- 680101
CTCTTTCTAGCACTGAGAAAAGTTCTAGCACTGATGAGTAGATGCACTGAGTAGCCACACTGAGT
AGCTGCAGTGAGTAGCTGCAGTGACATGAGCTTCTAGGCATTGATCGACAATGCTTACTTACAAT
GTACCTGTCGAGGATCATGCGCCAGACAAGTGATTGTCTCCGGTAGTCTTGTTTCTTGGGCCAGG
AAGTAACGAATTCAAGGCCGGTTAAGCGGGTCTAGCGTCAGAGCAATTACACCAGTTGTCACGTG
GTGGGCGGTTCCAGGCAAGCGAGTAAGCAAGAACCGGCCGGGATAGATCCATATGCTCTATCTCC
AGGTTTTAAAACCCTTCGAGTTGCGTTATCGCTCCTCCTCTTTGGCTGCGCTCCTCTTTCTTTTG
CTCCTGGTGCTAGTGACTCTCCTTCTCTCTCCTTCCTTCCCTCGTCCAAATGGCTTGTGCCTTGT
CCCCGGTCCCCCGCCCGATCTATGTTGATCCTTGTGCGCTCAAGC
Found at i:679690 original size:13 final size:13
Alignment explanation
Indices: 679636--679686 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
679626 CTAGCACTGA
*
679636 TGAGTAGATGCAC
1 TGAGTAGCTGCAC
**
679649 TGAGTAGCCACAC
1 TGAGTAGCTGCAC
*
679662 TGAGTAGCTGCAG
1 TGAGTAGCTGCAC
679675 TGAGTAGCTGCA
1 TGAGTAGCTGCA
679687 GTGACATGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (13 bp):
TGAGTAGCTGCAC
Left flanking sequence: Indices 679136 -- 679635
AGGTAGGCTTTTTCCCAGATCCTCTTTCCCCCTCCCTCCATAAATCCTGCTGAATCCGGGTGTTT
AAGTTCGTGGATCCTGGCAGCACTAAATGTGCCTCGCCCTAAGAAACTAAGGCACGAATGTGGTT
CAAAATCCTATCCATAAGTAAGTTTATAAAGAAGATCCCTTAAGAAAAGGGATAGGTTCTGGGAC
CGAACTGGGTAAGGTTCTGTCAGTCAGCATTAAAGCTTGCAGTACTTTCAGAGTAAGGAGGGAGT
ACGTTTCAGCATTCCCACTTATAATCACTTCCGGTACTGGCAGGGGCAATTTACCTACCATGTTA
TCTATCAACCGATCGAAGCTCGAACAAGGGTCGAGGGTCTATGTAGAGGGCCGAGGTGGAGGGCC
GTGGTTGCTATGGAAATGACCTTAACACAGACTAGAGCTTCATGCACTGAGTAGAGCTTCATGCA
CTGAGTAGAGCCTCTTTCTAGCACTGAGAAAAGTTCTAGCACTGA
Right flanking sequence: Indices 679687 -- 680186
GTGACATGAGCTTCTAGGCATTGATCGACAATGCTTACTTACAATGTACCTGTCGAGGATCATGC
GCCAGACAAGTGATTGTCTCCGGTAGTCTTGTTTCTTGGGCCAGGAAGTAACGAATTCAAGGCCG
GTTAAGCGGGTCTAGCGTCAGAGCAATTACACCAGTTGTCACGTGGTGGGCGGTTCCAGGCAAGC
GAGTAAGCAAGAACCGGCCGGGATAGATCCATATGCTCTATCTCCAGGTTTTAAAACCCTTCGAG
TTGCGTTATCGCTCCTCCTCTTTGGCTGCGCTCCTCTTTCTTTTGCTCCTGGTGCTAGTGACTCT
CCTTCTCTCTCCTTCCTTCCCTCGTCCAAATGGCTTGTGCCTTGTCCCCGGTCCCCCGCCCGATC
TATGTTGATCCTTGTGCGCTCAAGCAAGAATTACCCAACCCGGTAAACGCCCCTACTCCCTGTCG
ACTGGCTTGCATCAAACAAATTAAGTTCTAATAAGCATAATCGGC
Done.