Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MW717908
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 192338
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Found at i:21032 original size:16 final size:16
Alignment explanation
Indices: 21011--21046 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
21001 TGTTCTTTGT
21011 TTATATATATATAATA
1 TTATATATATATAATA
*
21027 TTATATATATATTATA
1 TTATATATATATAATA
21043 TTAT
1 TTAT
21047 TAGAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATATATATATAATA
Left flanking sequence: Indices 20511 -- 21010
CGAAGATCTTGGATCCGAACCTTCGCTTCGCATCTACTCTCTCTTAGAGGATGAACCACGCCTTC
GCTATCGCAAGAATATAGCGATCGAAGAGAGCTATCGCTGAGCTGCTTCGCGTATTACGAAAGCC
GTATTGCCCGAAGGGGGCACGCTGCAAGAGCGTAGGTGAGTGGTAAGCGTAGGAGGCGTACCCGA
AGGGCAGCAGCAGCAGTGTGGTTCCTGGTGCCGTCGCTAGATTGAGATCTGCAGGGTGGCGGGGA
CTTCGACTGCCTTATATCGGGTGAAGAGAAGGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAA
TATAACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGCTACGGATCTCTA
CATGCAATTCGCTCACTTCGGGAAGAGCGGACGGAAAGAGGAGGCCTTTGCTCTATCTGCTTCTT
CCTCTTCCCAGGAATGAACAATTGGAAAAAAAAGATGTTCTTTGT
Right flanking sequence: Indices 21047 -- 21546
TAGAATAATTAAGCAAGCGGCCCTTTCGCGACTCAAACTGCCGGTACGCTTTCCGGCTCGCAACG
CCTCAAACGGGCGGGGGCTCTCGATTTGCTTGCAATGCCGGCTGTTCGCCTTTAGTTAGAAGTAG
AAGTAGAGGGGCCCCACACTTCAGAAAAAGTAAAAAAGTATGGATTAAGTAAGAAAAAGTACATA
AGGAGTGAGAAAGAAAAACTGGGTTACGGGAACCGAAGGTTAGGCCGACTACTTACTTTAGTATA
GCTACACCTAAAAAAGTTTATTCCTACCCCCTTTGTGTAAATGTTGCCAATTATCAGAATACTAA
TAATGTACCCTCGTGCATACAATTGCCCAACTACTTTCTTCCTCCGACTTCTTTAGCCACTTCCG
CATCTGTCGTATTCGGGAGAGCTTGCTTCGTGGCGGAGCATTTAGCAATGCCAGCAGCCTGGTGA
GGGCTGGCTGTCTGGGGACAGGTTAAGGCAGGGCCTGCTGGGCTT
Found at i:52740 original size:17 final size:17
Alignment explanation
Indices: 52718--52762 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
52708 TGGGGAAGAG
*
52718 AGGAAATCTGTCTTTAT
1 AGGAAATCTGTATTTAT
* *
52735 AGGAAATTTTTATTTAT
1 AGGAAATCTGTATTTAT
*
52752 AGGGAATCTGT
1 AGGAAATCTGT
52763 GCTTACTAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (17 bp):
AGGAAATCTGTATTTAT
Left flanking sequence: Indices 52218 -- 52717
CCATACCCATGATTTAAGGCGGGCGAGGACTGGGGGAAGAAAGACTTTCTCTTGAACCAAAACTC
AAGATGATCCGATCCGTGCTTCGCCCCAAGGCACTAGGAGAAATTATCTTTCTAAAACCAAACCA
ATCTGATCCACAGGTCGTTCTGCCGGCAGGAGAAGAAATCTCTGTAGTGTGCAGTCCCTAGCCTT
ATGGGGTGGTGAAGCAGAGCAAGCAGTCCTCGTTAAGATAGGAATATCTATTAAAAATAAAAAAA
GACGCTATTTTCATTCAACTGTGCTTGAAAGAGAGAGGATATGATATAAGGTAAGCCCCAATTCC
ACTGAAAGATTCAATTCAGTCAGCTTGGCTTTTTCTCTAGTTTGCCTTTTTGTCTACCTTCTTTA
GTCAATGTCGCATTTCGAGTGCTTGGTTAGATCTCCTAATGTAATGAACGAGAAGATGCGGTGAA
TCAATCAGTATTAGCTAAGGAAAGCATTCTAATTCTGGGGAAGAG
Right flanking sequence: Indices 52763 -- 53262
GCTTACTAAGCCTTTGTTTGAAGGACCGGTCTGAAAGTGCAAGACTAGCTGGACCCGGACTGACT
AATCGCTAAGAGCTCACCCCGAGTGGGATAACTCTAAGTACGGCATTCAGTAAGAAGTAAGCCAA
GTTCAGTGATCCTCGAGAATGAACTATCAGAGAAGAGAAGGCTGAAAGCCTAGCCGAAAGCTTTT
TAGTCAAGTACGCATGAAGAGTTTTGAGGTAGAGGAAGAAGGCATTCCATTCCGCATTCTTTGGC
ACGAGGGTTTGGCTTCCTTGATTCAGGTAGAAAAGAAGGGGCTATGGCACTTGGTTCATTCCTTT
CTTTGGCAAAGGAAGGAAGCAAGCAATTCGGACAGAAGAAAGAGGGCTTTAAAGAATAAGATACG
TAGAGCGTGAACCAAGGTTCATAGGCGGATCAAAGCCGAATCTTGCAGATCCTAGTTCGCTTACT
AATCGCTTTCGGTTTCGGGACCAGTCTTCAATGGCATGAAGCTTT
Found at i:79056 original size:16 final size:16
Alignment explanation
Indices: 79035--79066 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79025 GGGCATATTT
*
79035 TCTCATTTAAGACTCA
1 TCTCATTGAAGACTCA
79051 TCTCATTGAAGACTCA
1 TCTCATTGAAGACTCA
79067 CAAGGAAGCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.34
Consensus pattern (16 bp):
TCTCATTGAAGACTCA
Left flanking sequence: Indices 78535 -- 79034
CTTCGTTTTCTGTTCCCGATTCAATCTTCACCTTTCCTGAATTAAGAAAGAGAGTGAAAGAGAAG
AGATCAGTGCAATAGGTACAGAGGGGAGAGAAACTGTCTTCGTTCGGTTCGGCAGAAGAAAGCCG
AGAAAAGTGGATTCTCATCTCATAGTTAACCAGGAAAGACAAAGACCGATAACCATAACCGTGGC
GCTATCTGTAGCTTGAGCCAACCAACCTTAACCTTTCGCTTGTTGACCGTCTTTCACTTGCTTTC
GAACTCCTTCGTACCCTTACTTGATCCCATCTTCTCGAATAGGAGAATAGTCAGAGTACAGCCCC
TTACTCAATAGGGGGCGAAGAGCTCATATTCCAGAGGGAATAACTGAAGGCATTGAAAGAGGTGA
ACCGGGGACAGGAAAGCAAGAGCAAGAAGGAAAGGCTAGCAAAGATCAGCTTCGAGATAGCCAGG
TCAGCGATTGAACTCGTCTAGTAACTAGTAAGAAGGGGCATATTT
Right flanking sequence: Indices 79067 -- 79566
CAAGGAAGCGTTGGTTGGGCAAGCTCTTTCGAGGAGATCAACCGTCTGGGATATTAAGAAGAAAG
AAGGAGCAAACTTCACTTTAATATCTATATGACGATTGGAACTGGACCAATAGGAAGTAGAATAC
TTGCTTGAATCCCAACCTTTTTGATTGTAGAAGGGTCCACATATGGGCACTGCCACTATCAATCA
GAATGGTGATGGCTTTTCTTTCAAGTAGTCCCTAAACTCGCATGCTTTGTGGTGTGCGAAGACCA
GCAATAGCTTGTAAAGAGATCTCTGGCGGTTCAGGTCCTTCTAGCCCTTCAAGCCCCATTCTTCC
CTTTGTCCCTCTTCCTCTTCACCTGGCCAAGCCCCCTCGATCAGAAAGAATTTATCTTCCTTCCA
TCTATAACCGGGATGGAACTTCTCCTCACAATTAGAGTATAGCACAAGAAGCCACGATTTCGCCT
CGACTCTGCCTCAGCCGGTCTGAGACGCTTCATTCTTGGAAAGGT
Found at i:98734 original size:15 final size:15
Alignment explanation
Indices: 98714--98747 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
98704 AAGGTGCATT
*
98714 TCAACTCCCCCACTC
1 TCAACTCCCCCACTA
*
98729 TCAACTCCCTCACTA
1 TCAACTCCCCCACTA
98744 TCAA
1 TCAA
98748 TTGTCCACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.50, G:0.00, T:0.24
Consensus pattern (15 bp):
TCAACTCCCCCACTA
Left flanking sequence: Indices 98214 -- 98713
AGCTCTGCAAAAAGGGGCTTTCGCCCATTTATAAATTTCGTGCTTGTAACTGCTATATCCTGGGT
GTCAAATCCGTCCACTGGCAGTAGTGATCTATATCCTTCTATCTATCCCATTTTCATGGCGTAAA
AGAAAAGAATATAGCCAGTTTCTCCTTCATCAAAATAGGCCGTTTACCTGTCCTCTCCTCTTCGT
AACTTCGTCAATGGAGGATAGCTCTTTCCTAGTGATAATCTATTCTTAACACTAACGGTTTCCTC
CAAGTTGCCCCATCCTGTGTCTTTCAGAATAGCCTGCTTGAGGGGCCTGAAAAGCCACCCGCTAA
CTTGGTGGATGCGGAATCCAATGCCGGTTATTTCAGGGAGTTCTATCGCATTTTCTTCAACGGAA
TAGAAGAGAAGATGGAATCAAGGTCAATATCAACCAAAGGGAGTTGAATTTATCCTTTATTGACT
CTTCTGACACCTGAAGGTACACACCAGAGAGAGAAAAGGTGCATT
Right flanking sequence: Indices 98748 -- 99247
TTGTCCACTTTCCATTATCCAGGTCCATCTCCATTATCAGGGACAAATGGGGTATATAGAAGTTA
ACATAGCTTTTTATGCTGAGGTGGATTGAACCTCTCTGAAAGATGAACCCAAAGAGAGCTCTAAC
GCACTACTATAATATGTTAATAATCGAGCGCATCCCTTAGGACGAGCAGCCCTTGAGTGGGAAAC
TCCAAGCTCTGTCATCTTCGCATTCGTCTAGAAAACATCTTCTTGCTCATCAAGATTGAACCAAT
GATAAGCTTTGAAGATCTACAACGGAGAGTGCTCCATTTGGTTTATGCAATATGAAATTCCGTGG
GAATGATTGTCAATACTAGACAGGCTCTTTGATCGAATGGGTGATATAGCTTAGTATAAACAAAT
CAAAGCTATTCGTCTAGTCTACTCCAAGCGTAGCCTAAGCAGTAGAGGAGAGGGATCACCCGGTA
ACAGTATGGCAAGGGGTGAAAGCCCGATGAAAGGCTCAAAGTCTC
Found at i:101160 original size:38 final size:38
Alignment explanation
Indices: 101118--101194 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
101108 TCTTTCTTTC
101118 ACTTGCTTCTCTTCCTTCTGGCCAACCCCTCGTATCAG
1 ACTTGCTTCTCTTCCTTCTGGCCAACCCCTCGTATCAG
* *
101156 ACTTGCTTCTCTTCCTTCTGGCCAACCCTTCTTATCAG
1 ACTTGCTTCTCTTCCTTCTGGCCAACCCCTCGTATCAG
101194 A
1 A
101195 TAGGAGATCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.14, C:0.38, G:0.12, T:0.36
Consensus pattern (38 bp):
ACTTGCTTCTCTTCCTTCTGGCCAACCCCTCGTATCAG
Left flanking sequence: Indices 100618 -- 101117
ATCACGCAGATTTACAGGAGACGGGAGACTTTCCAGTGTCCGGATGACTTATTGCGGATTCGATA
CTCAAAGAAGGCCTAGAAGCGAATAGCCCACTTGAGCAATTCGCCATTCTCCCACCGATTCCTCT
TCATATCAGAAGGCCTAGATGCGTTATTATCATTACCAGATTCCATTCAAAGAAAGAATCACTTA
GACAAAGACCTTACCTTAAAAGTGAAGATAAGCCACGAAGTGCCCGGTTGTGCCTTGCCTATGCA
TGCGTAAAGCAGAATGCGAAAGAGAGGCATGCGGTAACCCAATGATGATGGATCAGATACCAGAA
TCACCTCCTTTTTCCATACATATCAAACGGGAAATTCGCAGTGGACCCTTGTACTCCCTAACTCA
GTGGCCGGTTCGATCATCTAGTAGGGTTCATTAGTTTCCGGTACTGCTTGCTGAGATCAGCATAA
AAGATAGGGATCGTATGTAGGGATGTCTCAACCTTTCTTTCTTTC
Right flanking sequence: Indices 101195 -- 101694
TAGGAGATCCCATCCCACCATATCTAGTGAGGGAAGCCGAGCCGGTCAAGAGAAGGTTGACTCTC
CATCCCACCCGAAGCCATAGCGGAACATCAATCGAAATCAGACTTTCTATCTCTAGTCGACCACA
GCCGATCCATCTACGTGCTCCTGGCGGTCACAAAAAAGGATATCGCTCGCTTGACCAAGCTTGCC
AGTAACCAGGTAGGAAAAAAAAGGTAGGGTCATCAAATGAGCATCAGGTGGGGTGGTCGAATAGC
TTTGTATTGAAGAGCGGCATCGAGGTGATGATGCAAGGGAGGCTCTTGGTGACGACGTTGGTGAA
GACACCGGCGAGACCCGAGTAAAGTCCTCCTCATCGAAAAGATGATCTGCCTACTTCCCATCGTG
AATAGAGGCTCTGCACCGTCGGAAGGCGTATTTCACATAAGGCGCCTACACACCGCACCATAAGG
AATAGAGTTCCGCATCGGGAAGCCTGCTCCTCGGGCTGTTCGGTA
Found at i:126564 original size:39 final size:39
Alignment explanation
Indices: 126509--126587 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
126499 CCCCTCCTTC
*
126509 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
126548 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
126587 A
1 A
126588 TAGAAAATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 126009 -- 126508
TTTTCTCCGCGAATTACCCCTTCCCAACCAGCCCGCCCGATCTTTTTTGTAAGATCGGCTAATTC
AAAAGGGTTAATCTGGTCCGAAGTTGTCGGAACGAATCGTTTGCTTTATCGAACAAAGCTTTATT
AGGGGTCTTGGTGGGCCCCCTATTTTCAACCATTACAGCTGGCGTCGACCAGCTTTGCGATACGG
ACGGACACGAAGAAGAACGCAGGCAGCGGAAATGCAAAAGAGAAGAGCAAAGATTCCCGACCCAG
AGCATGTTATTGACTCAACCACAAATCTGTTGAATGAAGGTAGCTTGCTTACTCTCAGCCACTAG
TTAGAAGGAAATCCCTTGACTTCGCTTATGCCCTTATGTTATGGCCCTTATGCAGTAAAGAAAGC
AAGTGAGGCGGGCTAAGATTCCATTCGAAGTAACGTAACAGGATTCGATGTTGCACCATCTTCAA
CTCTTCTCTGGATCCGGAGTTTTTCGAGAAAAGGTCCCCTCCTTC
Right flanking sequence: Indices 126588 -- 127087
TAGAAAATCGAAAACGTACATAGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCATTCGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGACTACATTTA
TGTTAAGTCTAGTTGCTTGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATTCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTTG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:127507 original size:15 final size:15
Alignment explanation
Indices: 127484--127513 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
127474 CCCTACTAAT
*
127484 GTATTGTATAGTAGG
1 GTATAGTATAGTAGG
127499 GTATAGTATAGTAGG
1 GTATAGTATAGTAGG
127514 CGAGCGAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (15 bp):
GTATAGTATAGTAGG
Left flanking sequence: Indices 126984 -- 127483
TAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGGTTTGTG
CCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGCTTACAGGGCTAGGGCTCATAAACCCT
TTCTTTCATTAATCAATAGGGCCCTGGTCGGTCACTTTTCCGGGCCGGGATCGATAAGTGGAAGT
CATAAAAAAGAGATGTTTCTCTTCGCACCTCAGATCAAGAGGAAGGGTAGCTTGTCAAGAAAGCT
GGCCTATATATATTTATATCTTTTTATTTATATATTATTAAATAATAATATATAAATAAAAAGAT
TCGCTGTCTTTTAACCGGCTGTTCTTCTTTGTCAACGCCTACTAAGGACCTATAGGTTGGCCTAC
TTGACTTATGAAAGATAATGAGAATGGGTTATTAAAAAAAGGAAAAGGCGCTACTTAGCCCTACA
TTAGTAGAAGTAAGCGGTTGAGTTAGCCTAGCCTACCCTACTAAT
Right flanking sequence: Indices 127514 -- 128013
CGAGCGAGTTAGCGAAGACGCTTAGGCTAATAGATAAGAGAGCGTCGGTGCGTAGCCTTCATTCT
ACTACGCTACGCAAAGGTTACGAAGTCACTTAGCTCGACGTTAGGAGAGTCAAGGGGGGAACGCC
ATACCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCTAACCTTTCGCTCCCCTACTGA
AAAGGGGCAAAGCCGCTTCGCACCACTGATAGACTACTTAAGATTCAATTCAAACCTACTTAGTT
TCGCAAGCCTTTGTCATTGTCAGTCAACTAAGTAGGGCCTGAGGCCCCCTGCGAATCCGTAAATC
TGAGGAGCATGCCGCAACAAAAGGATGGTCCCCTATGTATTTTTTAATTTCCGGACAGAGGAAAA
AAAAAAAGAAGTATCCCCATCATGGTGAACCTCTCCTTGTGATCGGGATGAGGTAGATGCCTCCC
AGCCGGGGGGGGCGGATCGAATCGGAGTTTCCTTAGGTAGCCACC
Found at i:133078 original size:16 final size:16
Alignment explanation
Indices: 133057--133090 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
133047 CAAATTACAG
133057 TACTCTCACTCTCTTA
1 TACTCTCACTCTCTTA
133073 TACTCTCACTCTCTTA
1 TACTCTCACTCTCTTA
133089 TA
1 TA
133091 GTGTACTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.21, C:0.35, G:0.00, T:0.44
Consensus pattern (16 bp):
TACTCTCACTCTCTTA
Left flanking sequence: Indices 132557 -- 133056
CTAGCATTCGATGCATCAACTATGGCAGTTACGATAAGAAAAGAAATAACTAGATTCGAGAGCTG
CGGATATTCATTCCTCCAACCGAGGAGACCCTTTTATTATATATAGGCTTTTTGCCTTACGAAGT
ACTCTAGCTCTCACCAATTCTTCTTCGCGGAACCCTCCCGCACAGCTCTTTCACTTGCAAAACCT
GCGACAAGGAGGTCCTATTAATCACGAGATGGCATGAGCTTGTTCGGAGGCCTACCCTTTGACTT
ATTCAAGTTTCGCAAATAATGTAGTGTAGTTAGCATAATGCTTTTGAAGCTCTAGAAAGGCATAT
GTGGTAGTTTATGTAGTTACCAAAATCAAGTAGTTCAAAAATGTTGGGTTGGATAACCCTATTAG
TTGTTGTGGGTCACGAGCATGTAACTTGTTTTGAATTTTTCTTTATTTTATATAAGCCTTCGCAT
TATCTTTCCTGAAGGTGATTTTTGAATTGTGTCCACAAATTACAG
Right flanking sequence: Indices 133091 -- 133590
GTGTACTACATTACATGAAACGTAGTTCAAGTTTTCGCCCGATGATCCAAGGAATATTCATCTAT
CTATATATATATATATTATACTTTTTATATATAAGTATTTACAACTACTTCTTTCTCTTATAAAT
AAGACGACCCTTTGCTTTCTGCCCTTTTTCGTCATTGCCCTACCACCTGGGCAAGAACCTCAGGT
GCTACAACTACTCAATCAATTAAATTCTTATTATTCGTTGAGCGAGCAAGACCCGGAGTGGCTAA
TTTGGGTACAGGAAGAGCTTAATTATAGGACTCCACCCGCCCGGATGGCTCAACGAATTTTTTCC
TTTATCCACCTGGAACAAACGGAGATGACTAGAATGGAATTAATCGGCGCGTTCAAACATATATA
TTATATTATTCGAACGGAGTCTTTCTTCCAGTCGAACCTTCCATTCTAGAGTCCTGTCTGTGTCA
AATGGGTACTTGAGCGGCATAATATTTATTTTAGTCGCTTTGCTC
Found at i:173302 original size:24 final size:21
Alignment explanation
Indices: 173275--173318 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
173265 TTTGAATGCT
173275 TTCCTATTCAAGACATACTACCAA
1 TTCCT-TTCAAG-C-TACTACCAA
*
173299 TTCCTTTGAAGCTACTACCA
1 TTCCTTTCAAGCTACTACCA
173319 CTACCGAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
23 5 0.26
24 5 0.26
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.32
Consensus pattern (21 bp):
TTCCTTTCAAGCTACTACCAA
Left flanking sequence: Indices 172775 -- 173274
AAACCTGTCCATTTTTCGTGCCTTCGTATCTATAATCTAAAAACTTCTCACCTCTGTGCCTTCTG
TATTTCTCGGCTCAAGCAAGAGCCACAGTGACTGGAACAACAGGAAAGCCACCTTAATCAGTCAA
GCAAGCTATTTTCATAGGGATTATGAACAGGCCCTTACCTTGGCCTTACCCGTTCGATTGATTGT
TCTAAAGTCGAAGTAATTTCGTTACGTCGAATTGAAAGGTAGGTTTTGTCAGTGATTAAATGGAA
AGGGGGAGCGGTTCGGGCCCACTCTTGAACTTTTAGGCTAATTAAAAGCCGAAACAAAGGCAAAA
TATCGGCATGTAACTGAGAAAGATGGGATTCGGTCAACAAACAAAGGAAATTAAAACACTCCCTT
CTTTCTTTTCTGTCGACAATGATGAAAACCAGATATAACTCTAAAGTAAAGCCTTTCACTTCATT
GTTCAAGCTCTTGAACATGGGTTGAGTTCATACATTTTGAATGCT
Right flanking sequence: Indices 173319 -- 173818
CTACCGAAGCTGGCTTGCTTGTTTTGGTTACCTGTTTGGGTTTTGAAACCAGAGAAAGAAGATAC
GGTTGGACTTGCTAGCGATGGGAGATTAGTCACCGGAAGACTTGCAGGCTTTCTCCTTCAAAATA
AGGTGGCTAAGACGGGTGTCCTATTCCAATAGCTGGAATACGGGCTATTACGCCTATTCAACATA
TTCCGATTGTGATACAATTCCATTGCCTGCTCCTATTCATGTTCGTGCTTACTTGTATGCCGAAA
CTTCAAGGTCAATAAATAAGGACTCCTATTCTAGGTCTGAAACTCGGTCTGCTTGCTCCTACAAA
AGCTCATACGGGGTGTCTCCTACTCCTCTCCCGATACGAGTTATTTCCTGACCGTTCCCTCGTGC
TTGTTTCAGGAAGCACTTCGGTCACTCCAGTAAGTATATAGATTATTTGACAGACGACAAAGAGT
GATTTACCGACGAAAAGAGGTCAAGCCGATAGGACCTACTCGATC
Done.