Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KX171639
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 264483
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
File 2 of 2
Found at i:133962 original size:23 final size:23
Alignment explanation
Indices: 133932--133984 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
133922 TAGAGGTAAG
133932 GGTAAGGGTAGGCCCACCGTCCA
1 GGTAAGGGTAGGCCCACCGTCCA
*
133955 GGTAAGGGTAGGCCCACCGTCCG
1 GGTAAGGGTAGGCCCACCGTCCA
133978 GGTAAGG
1 GGTAAGG
133985 ATGCCAGCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.21, C:0.26, G:0.40, T:0.13
Consensus pattern (23 bp):
GGTAAGGGTAGGCCCACCGTCCA
Left flanking sequence: Indices 133432 -- 133931
TCGGAATCATGATTCGTGTACTGGGCTGAAATTCAAGGTACTATTTCGCACGCACGCAAAGACTG
GGCCATTTCCCGAAGGGCTGCTTTAGCCGATAAGCCCATTTCCTGTTCTTTCCTACTTAGTCGAT
ACGCGGCTACTTGAATAGCTACCGAGGTAAGGGTGTACTTCCCACACTCTGATCTTTGAAAAATT
TGAGTAATATTTTGTTTCAAGTTGTTTTGACAAAGAAGCAAGCTCTGTTTTTTACAACTCTTCTG
AAATCCACATTTATAAATAAGGTAAGCAACTACCTCTATATACCATATTATTGATGGTGCTATAT
GGTGCTAAACCTAGGGGTAAGGGTAAGCCAACCTAAAGGAAAAGGTAAGGGTAAGCCCTTCCAAA
GCCGGGATCCAAGTTGTCCCACTCTCCCTCCTATCCGGAAAACTTCCTTTCCTATCCTAAAGGTT
ACTATATTGTTGATAGTGCTATATGGTGCCAAACCTAGAGGTAAG
Right flanking sequence: Indices 133985 -- 134484
ATGCCAGCCATAGGTAGGCCTTTAAGGTAAGGGTAGGCCTACCGTCCGGGTAAGGGTGCCTTGCC
TGTCTGCCTGCCCGCCGGGTGCCAACCCCTTCTAGTAATGTACTTTAAGGAAGGTGGACATCTTG
GGTTTGGGCAGGTTTTGGCAGGTACACTATCGCTCGCCTGTATGGGATACACTTAGGGCACCTAA
TGCACCTAGGGCAAGCAAATTACCATATTGTTGATGGTGCTATATGGTGTCAAACCCATAGGTAG
GCCTTTAGTGTAAGGGTAGGCCCACCGTCCGGGTCAGGGTGCCTTGCCTTGCCTGCCTGCCTGCC
CCATAGGTAGGCCTTACCCTAAAGGAAAGATCCAAGTAAGGTAGGAGGGAGAGTTTCCCGGGAAA
AGGGAGGGGGGCTGGGTATCACGGGGATCCGAGTTCGTGAGAGTGTCTCCCGTACCGGGGACTTG
GATCCAAAAGAACTAACTTCCCCAAAAGAACTAACTTCCCCCTCC
Found at i:134466 original size:18 final size:18
Alignment explanation
Indices: 134443--134480 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
134433 GGACTTGGAT
134443 CCAAAAGAACTAACTTCC
1 CCAAAAGAACTAACTTCC
134461 CCAAAAGAACTAACTTCC
1 CCAAAAGAACTAACTTCC
134479 CC
1 CC
134481 CTCCCCACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.37, G:0.05, T:0.16
Consensus pattern (18 bp):
CCAAAAGAACTAACTTCC
Left flanking sequence: Indices 133943 -- 134442
GCCCACCGTCCAGGTAAGGGTAGGCCCACCGTCCGGGTAAGGATGCCAGCCATAGGTAGGCCTTT
AAGGTAAGGGTAGGCCTACCGTCCGGGTAAGGGTGCCTTGCCTGTCTGCCTGCCCGCCGGGTGCC
AACCCCTTCTAGTAATGTACTTTAAGGAAGGTGGACATCTTGGGTTTGGGCAGGTTTTGGCAGGT
ACACTATCGCTCGCCTGTATGGGATACACTTAGGGCACCTAATGCACCTAGGGCAAGCAAATTAC
CATATTGTTGATGGTGCTATATGGTGTCAAACCCATAGGTAGGCCTTTAGTGTAAGGGTAGGCCC
ACCGTCCGGGTCAGGGTGCCTTGCCTTGCCTGCCTGCCTGCCCCATAGGTAGGCCTTACCCTAAA
GGAAAGATCCAAGTAAGGTAGGAGGGAGAGTTTCCCGGGAAAAGGGAGGGGGGCTGGGTATCACG
GGGATCCGAGTTCGTGAGAGTGTCTCCCGTACCGGGGACTTGGAT
Right flanking sequence: Indices 134481 -- 134980
CTCCCCACCCAATGAGTGCCACGAAGAATGAGGGAAGGAGGGAGAGTGGTTCAAAGAACGGCCAG
AAGTTACCCTTCCCCGGAGAACCCCTGCGAAAACTTCTGCTTCTGCTTTTGGAAATCCGCAGAAG
GTGTGCAGAAGGAACTTCTGCGTAGCTGCGCGAAGAACCTTCTGGAAGCAGGAGTTCCCCGCTGC
GCGAAGCAACCAGAAGGGTTGTTCCCGCTGCGCACAAACAACCCGGCCCAACTTTTAAGAGCAGA
AGTTCAGGCAGAAGGGGGTTAAAAGTTGAAACTTCTGCTGCGCGAAGCAACCAGAAGGGTTGTTC
CCGCTGCACACCTTCTTGGCCCTTGGATCCCGGCAACTTTTAACACCTTTTAGGACAGGACAGAT
TTCCTACCAAAAGAGTGCCAACCAACTTTAACGGCTCGGCTGCTTTCGCAGCGAAGCAGAAGATC
TTGCACGGATCCCCGAGTTTTAAATCCGTGCCTACCTTTGTAAGC
Found at i:139155 original size:16 final size:16
Alignment explanation
Indices: 139134--139171 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
139124 GGAAAAGTTC
*
139134 TGAGGGCCACGAAGGA
1 TGAGGGCCACGAAGAA
139150 TGAGGGCCACGAAGAA
1 TGAGGGCCACGAAGAA
139166 TGAGGG
1 TGAGGG
139172 AGGTTGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.45, T:0.08
Consensus pattern (16 bp):
TGAGGGCCACGAAGAA
Left flanking sequence: Indices 138634 -- 139133
GACTGGAGATAAACCAGCATACGAAGCGGAGCACTTTCAAGTCGGCCATTTCTGAAAGGTATTCT
GATATCGATTCCATGCCAGGGTGGCAGAGATGCTGCTGGAATATCGAATATCCAAGGGCGTAGCA
TAAAACCTGAGCTCGGAGAAAGATCGGATATGTACGGGAGCCTCTCTCTTTGATTAAAAGGGCTG
CTTTCGAGTGGATGGCCAAAAACGAGCTAATAGTTCCAGGGAATGAGTGCAACTTTTTGCGCTGC
TTTCATTCGAAACTTTTCGGCCACGGGAAGGGCCCTTCCCCAAAGGTAGGCACGGATTACTGCCA
CTCCGAATGAGTGCCTAAAAGTGGCACGAAGGGATCCGAGTTGTCGGGATCCAAGGTGTCCCACT
CTCCCTCCTTCCTGACAAAGTCGGGATCCAAGTTGTCCCACAACTGTTTTGCCCAAACAGTTCTG
CGGTTGGTTGTTTCGCTTACAAAGGTAGGCACGGGGGAAAAGTTC
Right flanking sequence: Indices 139172 -- 139671
AGGTTGTTATCCGTGCCTACCTTTGAAAGCTAGCTCTTTTTGGGCAAGAAACTAACTTTTCGTGC
AAAAAAAATAAAGTCTCATCCGAAACAACCCAACCAGAACTTTTATGGTTGAGAGTTCGGCCCAA
AAAGAGCAGGTAGGCACGGATAGCAACAACCTTTTAAGTCCTTTGTAAGCGAAACAACCATAAAA
AAGTTGAAAGTTCGGCCACGAAAGCTGTGGCTAAACGAACAACCCAAAAAGTTGCCGTGAACCTT
CGCAAGCAAGCAACTTTTGCTTCCCCTTCACCGCTGCGCAAACTTCTGCAAACAACCCGCACTCT
TCTTTTGAAACCCGTCGCAGAAGGGTTGTTTGTGTGAACTCCTGCCACCCTCTTATATTCCTCTG
AAGTGGGAAACCCCTGCGCGTTCTTTTGGAAGCAGAAGAGACTAACTCCTTGGTCCCAACTTGCT
TGCTTTCTTTAAAGTGTGCAGAAGGTTGGAAGAAAGCAGCAGAAG
Found at i:140244 original size:5 final size:5
Alignment explanation
Indices: 140234--140275 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
140224 TTTTGTTGCT
140234 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
140276 CGGAGTGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 139734 -- 140233
AGAATTGTTTGGCAGCAGAAGTCTGCTGCGCATTACCCGAGGCAAAAAGTTAGTTTGCGGTGTTG
CAGGCAGAAGTTTATTCAGATTCTTCTGCTGCGAAAGCAGCCGAGCCGGGCACTCTTTTTTTGTT
CACACCTCAACTTCTGCACGAAAAGTTAGTTTAGTTTCTTGCCGAGCTAGCTTTCAAAGGTAGGC
ACGGATAACAACCTCCCTCATTCTTTAAAAGTGGCACGTGTTTAGGCGGGGCCTTGGATCCCACC
CTGCCGGGGTAAGTCCTTGGATCCCACCCTGCTTAACGGGTCCTTGGATCCCACCCGCCACTTCT
TACAGAGGAATATAAGAGGGAAGACACTCGTTAGACCGAGTGGGCTTTTTGGGTGGGTTTCCACT
GGGCCGTAGCGATCTTCTCCCCTCCCCGGTGCAGCGAGAGTCCCGGCAAGCCAACCTATCTCTGC
TGGGCAAGTAATGTAAGCCCCATAAATAAAGCGTATTTTGTTGCT
Right flanking sequence: Indices 140276 -- 140775
CGGAGTGTATTCCAGAGCGAAGGCAGCGTGAGTCGAGAGTGAAGCCAGAGTGAATCCAGGCCGGG
TAATTTGGTAGGTAGAACGAAGGCAGCTTTCTCTTTCTCCTTCAGAACGAAGGCAGCTTTCTCTT
TTCCCTTTGGTCGATAAGGGCTGCTTTCGAGTGCCGAAAACGCTACGCTAAAGCCAAAATCTCAA
TCTTTTTAAAAGAGCTTCTACGCCAAAAGCATCTTTATTCATTTTTTGAAGAGACTCCAATTGGC
TTGCCTGCCTTTTCCTCGCCCCGTTGCTTGCCAGGGATTTCAATCTTTCCTTAACCTCTCTCTTA
TATCCCTCTGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACTTCTGCAAAACTGG
TGTTTGGATCTGTCTTCAGCCACAGACCGCATGTCGATTGGCTGCTATGTCAGAATGTGGGATGG
GCTGCTTTTCGGCCCGCCCTGACTTCGCGAATGCGTGGGTGTCGT
Found at i:142250 original size:5 final size:5
Alignment explanation
Indices: 142240--142305 Score: 105
Period size: 5 Copynumber: 13.2 Consensus size: 5
142230 GAAAGCACCT
* * *
142240 AGGAA AGGAA AGGAG AGGAA AGGAG AGGAA AGGAG AGGAA AGGAA AGGAA
1 AGGAA AGGAA AGGAA AGGAA AGGAA AGGAA AGGAA AGGAA AGGAA AGGAA
142290 AGGAA AGGAA AGGAA A
1 AGGAA AGGAA AGGAA A
142306 CAACCTTTGA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 55 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (5 bp):
AGGAA
Left flanking sequence: Indices 141740 -- 142239
TGACTAAGGTGGTTGAGTCGGATTGGGAACCCGACCTGTCACCGATAGAAGTACCGGATGAGTTA
AAGGAGCGTTATATCGCTGCTCCAGGGTTGTGCCGGGGGGTTCTTTGGAGGGAGTTGCAGTTGGC
GCGAATTCGCTCATTGGCCCGGGCCTACCTCGGACATTCTGCTTTGGATGGCTGGCTTGGAGAGG
GGGTCCGCTTGTCGACCGTCGGCTAATCGACGCTTCCTACGATATGTGACCTCCGCTATTGGGAT
CGGTCTCAGGCCTTGTCTAAGGTTCCTCCTGCGTTACTACTACTACCTCTGACGGACGGTCGTGG
AGGGTTCAAGTGTGCTGGCGCGTAGAGATACGTGTCCGCATCCCGAAGCGGTGGTGTGATGTAGG
TGTTCTAGTAGAGGGAGTTCTTCGGTTACTTACTATACAAGTCGTCTTTGCGTGCATCCTTTCAT
CTATGGCGGGTGGGTTTCCGTCGGTTGCTTATTAAGAAAGCACCT
Right flanking sequence: Indices 142306 -- 142805
CAACCTTTGATTTCAAGAAGGCAGTATCCGGGGGGAAGAGGCAGGATTCCATTCGGAGCAAGCGA
ATAGACAAACCCTCAATCAAGATGGGGGCTTCCCCCCTTCGGGAACCCAGAGTTCCCTGCCCTTT
TACCCTGGCCTGGCACACCCTGGAAACCGGCCCCCCTGGGCTGGGCTGGCACACCCTAGCTAACC
AAGCCCTCCCTATTAACTTTATTTATTTATTTATCTTTAGCTCTATTTTCAACGCGTTCCTTACA
CATTGACAGGGGCGGTTTAATAACTAGAACACATATCCCTCACTAACAGCTACAGCACTAAGGAA
GATGCTGGCCAATGCCTCCACTGGCGAGCCCACTTGAACTCCCTTCTACTGTAGCAGGTAGAGAT
AGGACAGGTGGCATCTTGGATATAGCCTGGAACCGATCGAAATATCGAAAACAGCGTGCGAGGGT
AAAACGGAGATCCAAGGGGATCCAAGGAGTCCGGACACGATAAAC
Found at i:143260 original size:5 final size:5
Alignment explanation
Indices: 143250--143293 Score: 79
Period size: 5 Copynumber: 8.8 Consensus size: 5
143240 CGGGTAACAC
*
143250 GAGGT GAGGT GAGGT GAGGT GAGGT GAAGT GAGGT GAGGT GAGG
1 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGG
143294 AACTACCTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.23, C:0.00, G:0.59, T:0.18
Consensus pattern (5 bp):
GAGGT
Left flanking sequence: Indices 142750 -- 143249
CGTGCGAGGGTAAAACGGAGATCCAAGGGGATCCAAGGAGTCCGGACACGATAAACCCGACTTGG
CCGGGACGGGAGACCGGGTTGCCAGGGGGGCTGGGGATTCCATAAGGGGCCTTCCCCCGGAGAGT
TTTGCCCCCTCCCCACCCTGGCCGAGCGCAGGGGTAGAGGTGGCAGGAGTTCTTGACCGAGCGCA
GGGGTTCTCCGGGCCTTCTGCGAGGAACTTTTGGGTTCTCCGGCCGAGAAAGACACTCGGGGAAG
AGACCCCGGAGCACCCAGGGATTCTTTACCAGGCCATTGCCCGTCCAACTGCTGCTTTGGAAGTA
ACTCCTCTATATAAAGAGGGAAGACCCGTGTGAAGAGAAGAGCGGGATGTGCCTCTTTTACACGC
TAGCCCGGCACTCTGCCGGGCGGGCTAGGGAAAGCGGGATTTACTCCGTTTATCAGGCCGGCTGG
GAAGTAGGGGCGCAGCGCAGCTTTAAATCTCAAGTCGGGTAACAC
Right flanking sequence: Indices 143294 -- 143793
AACTACCTCTGTTTTACCCACAAGCCCAGGGAAGAGTGACTATACCCCAACAAACAAGAATGGAT
TGGACCGGGGTACGGGCCGGCCAAAAGCCACTACCCAGCACCAGAACCTCAAACTTGCCTGCCCT
CGCCATCACACAGCCCTTCAAACACCCACCCACCTTTTATAGATAGATAGAAGTTGCCCTTGCCT
CCTCGTTCTCCCTCTTTACTTTTCTATCCCTTGGCTCCCTCGCCCTCTTCTTCACTCTTGCCCAC
GCTCCTCCGACCTTACCTCTTTTTTGATTGATTTTACTCGACTTTACCATCTCCTTGGATCTCCT
TGCCTTTGCCCTCTCACTCAGGCCGCTACCTCTTGCCTTCCCACTCACTATTGCCTGCCCACTTA
CTCTTGCCTTCCCACCTTGACCTCGCCACCTAGCCGCTACCCTCTCGCTATGACCCTCCAGCAAA
GACACCCGCCTAGATTGCCACCTCCAACACAGAGGACCTAAGACC
Found at i:143674 original size:18 final size:18
Alignment explanation
Indices: 143651--143698 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
143641 CCGCTACCTC
143651 TTGCCTTCCCACTCACTA
1 TTGCCTTCCCACTCACTA
* * *
143669 TTGCCTGCCCACTTACTC
1 TTGCCTTCCCACTCACTA
143687 TTGCCTTCCCAC
1 TTGCCTTCCCAC
143699 CTTGACCTCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.12, C:0.46, G:0.08, T:0.33
Consensus pattern (18 bp):
TTGCCTTCCCACTCACTA
Left flanking sequence: Indices 143151 -- 143650
TCTGCCGGGCGGGCTAGGGAAAGCGGGATTTACTCCGTTTATCAGGCCGGCTGGGAAGTAGGGGC
GCAGCGCAGCTTTAAATCTCAAGTCGGGTAACACGAGGTGAGGTGAGGTGAGGTGAGGTGAAGTG
AGGTGAGGTGAGGAACTACCTCTGTTTTACCCACAAGCCCAGGGAAGAGTGACTATACCCCAACA
AACAAGAATGGATTGGACCGGGGTACGGGCCGGCCAAAAGCCACTACCCAGCACCAGAACCTCAA
ACTTGCCTGCCCTCGCCATCACACAGCCCTTCAAACACCCACCCACCTTTTATAGATAGATAGAA
GTTGCCCTTGCCTCCTCGTTCTCCCTCTTTACTTTTCTATCCCTTGGCTCCCTCGCCCTCTTCTT
CACTCTTGCCCACGCTCCTCCGACCTTACCTCTTTTTTGATTGATTTTACTCGACTTTACCATCT
CCTTGGATCTCCTTGCCTTTGCCCTCTCACTCAGGCCGCTACCTC
Right flanking sequence: Indices 143699 -- 144198
CTTGACCTCGCCACCTAGCCGCTACCCTCTCGCTATGACCCTCCAGCAAAGACACCCGCCTAGAT
TGCCACCTCCAACACAGAGGACCTAAGACCAGCACTCGCACCCGCTAATTAGTCACAAGGACGAG
ACAGACACCCCGAGCCAACTCGGAAGGAAGGAAGGGAGGAAACAACGGGTTAAACCTAAACAAAG
TGCCGGGTTGCAGAAGTTCTTTACCGAGCGCAGGGGTTCTCCCCACAAACAACCAACCTTCAGAG
TAATATAAGAGGGGACTTCTTGCTTGGGAAACTGCTTTTCGGCATGCCAAAGTTCTCATTCGAAT
GAGTGCAAAAGGGAAAGGAGGGAGAGTGGGCCCTTGGATCCCGACTCTTAGGCACATCCGTGCCT
ACCTGAACTTATTCCCCTGCGCGAAGCAGAAGTTCACACCTTCTTGGCCCTTGTGTGGCAAGTAG
GGGTCCAAGGACCCACTCTCCCTCCTTCCCTCATTCGAAGAATGA
Found at i:146289 original size:21 final size:22
Alignment explanation
Indices: 146259--146309 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 22
146249 AGGTAGGCTT
*
146259 GCACGGATAGCAACTTCTG-CG
1 GCACGAATAGCAACTTCTGACG
146280 GCACGAATAGCAACTTCTGACG
1 GCACGAATAGCAACTTCTGACG
146302 GCACGAAT
1 GCACGAAT
146310 GTTTAGCAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.18
Consensus pattern (22 bp):
GCACGAATAGCAACTTCTGACG
Left flanking sequence: Indices 145759 -- 146258
GGTAGGCACGGATAGCAACTTTTCCCCTGCGCACGAAAAGCAAGCAAGCAAAAGTGGGCGGTTGT
TTGTTTCCGTGCCTACCTTTGGGGAAGGGCCTTCCCCCAACCGTGGCCGAGAAGTTTCGAAATTA
CAAAGGTAGGCACGGAAACAAACAACCGCCCACTTTTGCACTTTTAATTGAAGTGGCACAAACAA
ACAACCAACCTTATTCCCACGAAAACTGAATGAGTGCGCAGGGGAAAAGTTGCTATCCGTGCCTA
CCTTTGTGATTTCGAATGAGTGCCTTCGTGCCACTACGAATGAGTGCAAAAGTATCATCCGTGCC
TACCTTTGTAAGCGAAACTTTTCGGCCACGAAATTACAAAGGTAGGCTGGCACGGGGGAAAGGTG
TGAACAAAAAAGCTATCTGAGCGCAGCGAAGCGAAGGCCCTCATTCGGGTCGGGAAGAAGTGGAC
CGAATTATTACAAAGGTAGGCACGGATTATTACAAAGGTAGGCTT
Right flanking sequence: Indices 146310 -- 146809
GTTTAGCAACTTTGTAGGAGGGATAGCGGGACCTTCACTTCGCTGCGAAAACTTCTGCTTTTGAA
ATCCGTCAAGAACACCACACTTTGTAAAGTGTGCAGAAGAACTAACTCCTGCCACCCTCTTATAT
CCCTCTTCAGGTTGTTTGTGGGGAAACCCCTGCGAAAACTTCTGCTTCTGCTTTTGGAAATCCGT
CGCAGAAGTTCTTCGCTGCGCGAAGCAACCTTTTCCCCTGGGTTGTTCCCGCTGCGCACAAACAA
CCCAACCTTCTTGGTCCAACTTTTAAGCAGAAGAACAACAACAACCTAGAAGGTTTTTGTTGTTC
TTCTGCTGCGCGAAGATTCAACCGCCCTTCTTGGTCCTTGGATCCCGACTTTGCCAGGTTCTGTA
GTCTGCTTTTTGGCACTCATTCAAAGTGGTAAGCACGAATAACAACCTTAAAGTTCATCTGCGCC
CTCAGATCCTTGGATCCCAACTCCTTGGATACCGGGGAATCAGAA
Found at i:148959 original size:4 final size:4
Alignment explanation
Indices: 148950--148993 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
148940 CTTTTCCCCT
148950 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
148994 AAAGAACTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00
Consensus pattern (4 bp):
GCAA
Left flanking sequence: Indices 148450 -- 148949
CCGCTGCGCTCAGAACTCTTTTTTTGTAGGTTTAACCTTTAAATCCGTGCCTACCTTTGTAAGTA
ATTTCGTGGCACACCTGAAAGTTAAGTTAAGTTGGAACCCGCACGCAAGCAACTTTTGCCCGTTC
ACCTGCTTGGAGAAACCAACCGGCACTCTTTTTTTGAGATCCGTCCTTCACTTCGCTGCGCGAAG
ATGGAGGTCCTTGTTTAGAGGTCCAAAAAGAACGGTAGCTGCGCTCAGATTCAAACAACCAACAA
CCTTTTGCAACCCTTCTGCACACCTTGGAACAACTGTCTGCTCTGCTCTGCTCTGCAACCAACTT
GAAACTTGCAACCCTTCTGCACGAAGAGTTTCGAAGTTACAAAGGTAGGCTGGCACGGGGGAGGG
GAGGGGAAAGAACCTTTTCCCCTGCAAGCAAGCAACTTCTGCACTCATTCGCAAATTACAAAAAA
GGTAGGCTGGCACGGGGGAGGGGAGGGGAAAGAACCTTTTCCCCT
Right flanking sequence: Indices 148994 -- 149493
AAAGAACTAACTTCTTCTTCGTGGCACTCATTCTTCTGGCAAGTGTGGCAAGTAGGGATCCAAGG
AACCACTATCCCTCCTTCCCTCATTCTTCGTGGCACACCTTGGATTCGTGATAAAAGTTGCACTC
ATTCCCACATCCGGGCCTACCTTTGTAAGCGAATGAGTGCCGTTCGTGCCACTTTTAAAGAAAGA
ATGAGGGAAGGAGGGATAGTGGTTCTTTGGATCCCGACTTGCCACACTTTATTTTTATCACGTTC
ACAAAGAACCAAAAGCGCTTGCTTTCTGAGCGCAGCGAAGCAAAAGTTGTGTTCTTGACGGATTT
CCAAGATTTTTGCTTGCTTTCTGAGCGCAGCTTTCCCCCGTGCGGGAACAGCTTTGTAGGCACGG
ATCCCCGAGTTTTAAATCCGTGCCTACCTTTTGGCCAACAAACTCATTGGCCCTTTAACAGTGGC
ACGAATAACTGATGCGGAAGCCCGAATTCGCTTACAAAGGACCAA
Found at i:149679 original size:5 final size:5
Alignment explanation
Indices: 149669--149725 Score: 105
Period size: 5 Copynumber: 11.4 Consensus size: 5
149659 CAGGGGTTCT
*
149669 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CATCC CCTCC CCTCC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC
149719 CCTCC CC
1 CCTCC CC
149726 GGGGAAGAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.02, C:0.79, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 149169 -- 149668
GTGCCACTTTTAAAGAAAGAATGAGGGAAGGAGGGATAGTGGTTCTTTGGATCCCGACTTGCCAC
ACTTTATTTTTATCACGTTCACAAAGAACCAAAAGCGCTTGCTTTCTGAGCGCAGCGAAGCAAAA
GTTGTGTTCTTGACGGATTTCCAAGATTTTTGCTTGCTTTCTGAGCGCAGCTTTCCCCCGTGCGG
GAACAGCTTTGTAGGCACGGATCCCCGAGTTTTAAATCCGTGCCTACCTTTTGGCCAACAAACTC
ATTGGCCCTTTAACAGTGGCACGAATAACTGATGCGGAAGCCCGAATTCGCTTACAAAGGACCAA
GAAGGGTTGTTTGCTTGCGTGTTGAATCTTTGCGCAGCTACCGTGCCGTTCTTGTTGGACCAAGA
AGTTGTGACCTCCAGAAGGTTGTTTGGTGTGAACTTCTGCTTCGCGTAGCGAAGAACCAACCCTT
CTGCCTCCTTCCGGGTTGGGAACTTCTGCTCCGCGCAGGGGTTCT
Right flanking sequence: Indices 149726 -- 150225
GGGGAAGAGTTCTTGTTGGCGTGTTGAATCTTCGCGCAGGGGTTTCCCACTTCAGAGGAATATAA
GAGGGTGGCAGGAGTTCACACAAACAACCCAAACTTCTGCCGATCTCTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCTTTCCAGAAGGTTGGTTGGTTGTTTGGAACCAGAAGGGTGTTCTCCGC
GCAGGGGAAGGGGAAGCCCTTCTGCGGATTTCCAAAACCAGAAGTTGCTTGCTTTCTGAGCGCAG
CGAAGTTAAGGTGTCCCACTCTCCCTCCTTCCCTCATTGGCACTCAGTTATGGGCTTTTTATGCC
GGGCTTTGGGTACCCCTCTCTCACTATCCTTTGTGCCGGGGGTAGGGGGGTACCCTTGGGGTAAC
CCTCTCCAGAAACAGAACTCAAAGTTGGTTTTTCACCGTCCTTCAGTAGAACCACGGTTGGACAA
ATCATCATCACCGGAAGCACTAGTGCTATAGTACCTGCTAGGTTT
Found at i:149847 original size:5 final size:5
Alignment explanation
Indices: 149837--149877 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
149827 CTGCCGATCT
149837 CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC C
1 CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC C
149878 AGAAGGTTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
CTTTC
Left flanking sequence: Indices 149337 -- 149836
TTCTGAGCGCAGCTTTCCCCCGTGCGGGAACAGCTTTGTAGGCACGGATCCCCGAGTTTTAAATC
CGTGCCTACCTTTTGGCCAACAAACTCATTGGCCCTTTAACAGTGGCACGAATAACTGATGCGGA
AGCCCGAATTCGCTTACAAAGGACCAAGAAGGGTTGTTTGCTTGCGTGTTGAATCTTTGCGCAGC
TACCGTGCCGTTCTTGTTGGACCAAGAAGTTGTGACCTCCAGAAGGTTGTTTGGTGTGAACTTCT
GCTTCGCGTAGCGAAGAACCAACCCTTCTGCCTCCTTCCGGGTTGGGAACTTCTGCTCCGCGCAG
GGGTTCTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCATCCCCTCCCCTCCCCTCCCCG
GGGAAGAGTTCTTGTTGGCGTGTTGAATCTTCGCGCAGGGGTTTCCCACTTCAGAGGAATATAAG
AGGGTGGCAGGAGTTCACACAAACAACCCAAACTTCTGCCGATCT
Right flanking sequence: Indices 149878 -- 150377
AGAAGGTTGGTTGGTTGTTTGGAACCAGAAGGGTGTTCTCCGCGCAGGGGAAGGGGAAGCCCTTC
TGCGGATTTCCAAAACCAGAAGTTGCTTGCTTTCTGAGCGCAGCGAAGTTAAGGTGTCCCACTCT
CCCTCCTTCCCTCATTGGCACTCAGTTATGGGCTTTTTATGCCGGGCTTTGGGTACCCCTCTCTC
ACTATCCTTTGTGCCGGGGGTAGGGGGGTACCCTTGGGGTAACCCTCTCCAGAAACAGAACTCAA
AGTTGGTTTTTCACCGTCCTTCAGTAGAACCACGGTTGGACAAATCATCATCACCGGAAGCACTA
GTGCTATAGTACCTGCTAGGTTTAGCAAGAAACATCAGCATCATTGGTGATGATGTACTGGATAC
CCGAGAAAGATAATCATCCAAAGAAACAGCTTCTACGACAATGGGCATAAACGCATGATTAGTTC
CACAAAGTTCACTGCACTGACCATAGTAAACTCCTTCTCGTTCGA
Found at i:157650 original size:4 final size:4
Alignment explanation
Indices: 157641--157726 Score: 73
Period size: 4 Copynumber: 20.0 Consensus size: 4
157631 GGCACGGCAA
* *** *
157641 CTTT CTTT CTTT CTCT CTTT CGCTTT CTTT AACTTT CGAA CTCT CTTT
1 CTTT CTTT CTTT CTTT CTTT --CTTT CTTT --CTTT CTTT CTTT CTTT
157689 CTTT CTTT CTTTT CTTT CTTT CTTT CTTT CTTTT CTTT
1 CTTT CTTT C-TTT CTTT CTTT CTTT CTTT C-TTT CTTT
157727 TTGGGGTGTT
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
4 51 0.76
5 8 0.12
6 8 0.12
ACGTcount: A:0.05, C:0.27, G:0.02, T:0.66
Consensus pattern (4 bp):
CTTT
Left flanking sequence: Indices 157141 -- 157640
GTTGGGGAAAGCCTGACAGGCCATCCACTCGACCCGGATGTCTTCCCCTCGCACGTGCCGGACCG
ACTCCTTCGTGCGTGCAAAAGTTTCATTCGTGCAAAGAATCTTTTCCTTCCCCTTCACCGCTGCG
CTCAGCAATCAATCTTTTTCGGACGGATTGAAGAGCTTGCTTGCTTTTCCCCGCTGCGCGAAGCA
GAAGTTCCCAACCCTTCTTGCCGCCAACCCGGTGGGATACTTGCTTGCTTTCTTTAAAGTGTGCA
GAAGAAGTTAGTTTCTTCTGCAAGAAGCAGCAGAAGTCTGCTGCGAAAGCAGCCGCACTCTGTTC
ACACCTTTAAATTCGTGCGCAGGGGTTGTTTGTTGCTATCCGTGCAAGCCTACCTTTGTAAGCTG
GCAAGCAAGAAACTTTTCGTGCGTGCACCCGGTTGCAGAGCAGAGCTTTTTGGTTCCAAAAAGCA
ACCGCCCCCCGCACGAAAAGTTTCGAAATGACAAAGGCACGGCAA
Right flanking sequence: Indices 157727 -- 158226
TTGGGGTGTTGTTTGGTTGGCCCCAAACCAAAAATAAAGTTGCACACCTTGGTTCCAAAAAGTGT
GAACTTCTGCACTGCACGAAAAGGTTGTTTCGAAAACTGTGGCAACTTTCTGCACTCATTCGTAG
TGGCTAAACATCCGGGGAAGCGGTGGCACTCCTTGGAACCAAAGAGTTCCCTCATTCGCTTACAA
AGGTAGGCACGGATTCAATCGCTTAAACAGTCGGGATCCAAGGTGTGCAGAAGGTTGTTTGAATC
TGAGCGCAGCTTTCCCCCGTGCGAGAAGGAGAACCCTACAGGACGGATCAAAAAAGAGTGCAACC
TTTTCCCCTGCAGGCAGGGGAAAAGGTTGTTTCTTTCTGAGCGCAGGGGAAGGGGACTTTTGGTT
GCTTGCGAAGGTTCTAACGCTCTTTCAGGTGTCCCACTCTCCGCATAAGTCTCGCGGGGCTCGGT
CAAGAACTTCCAACCTTCTGCGCAGAAGGGTGTAGGTTCTCGCAG
Found at i:157706 original size:17 final size:16
Alignment explanation
Indices: 157641--157726 Score: 73
Period size: 17 Copynumber: 5.0 Consensus size: 16
157631 GGCACGGCAA
*
157641 CTTTCTTTCTTTCTCT
1 CTTTCTTTCTTTCTTT
157657 CTTTCGCTTTCTTTAACTTT
1 CTTT--CTTTCTTT--CTTT
*** *
157677 CGAACTCTCTTTCTTT
1 CTTTCTTTCTTTCTTT
157693 CTTTCTTTTCTTTCTTT
1 CTTTC-TTTCTTTCTTT
157710 CTTTCTTTCTTTTCTTT
1 CTTTCTTTC-TTTCTTT
157727 TTGGGGTGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
16 14 0.25
17 22 0.40
18 15 0.27
20 4 0.07
ACGTcount: A:0.05, C:0.27, G:0.02, T:0.66
Consensus pattern (16 bp):
CTTTCTTTCTTTCTTT
Left flanking sequence: Indices 157141 -- 157640
GTTGGGGAAAGCCTGACAGGCCATCCACTCGACCCGGATGTCTTCCCCTCGCACGTGCCGGACCG
ACTCCTTCGTGCGTGCAAAAGTTTCATTCGTGCAAAGAATCTTTTCCTTCCCCTTCACCGCTGCG
CTCAGCAATCAATCTTTTTCGGACGGATTGAAGAGCTTGCTTGCTTTTCCCCGCTGCGCGAAGCA
GAAGTTCCCAACCCTTCTTGCCGCCAACCCGGTGGGATACTTGCTTGCTTTCTTTAAAGTGTGCA
GAAGAAGTTAGTTTCTTCTGCAAGAAGCAGCAGAAGTCTGCTGCGAAAGCAGCCGCACTCTGTTC
ACACCTTTAAATTCGTGCGCAGGGGTTGTTTGTTGCTATCCGTGCAAGCCTACCTTTGTAAGCTG
GCAAGCAAGAAACTTTTCGTGCGTGCACCCGGTTGCAGAGCAGAGCTTTTTGGTTCCAAAAAGCA
ACCGCCCCCCGCACGAAAAGTTTCGAAATGACAAAGGCACGGCAA
Right flanking sequence: Indices 157727 -- 158226
TTGGGGTGTTGTTTGGTTGGCCCCAAACCAAAAATAAAGTTGCACACCTTGGTTCCAAAAAGTGT
GAACTTCTGCACTGCACGAAAAGGTTGTTTCGAAAACTGTGGCAACTTTCTGCACTCATTCGTAG
TGGCTAAACATCCGGGGAAGCGGTGGCACTCCTTGGAACCAAAGAGTTCCCTCATTCGCTTACAA
AGGTAGGCACGGATTCAATCGCTTAAACAGTCGGGATCCAAGGTGTGCAGAAGGTTGTTTGAATC
TGAGCGCAGCTTTCCCCCGTGCGAGAAGGAGAACCCTACAGGACGGATCAAAAAAGAGTGCAACC
TTTTCCCCTGCAGGCAGGGGAAAAGGTTGTTTCTTTCTGAGCGCAGGGGAAGGGGACTTTTGGTT
GCTTGCGAAGGTTCTAACGCTCTTTCAGGTGTCCCACTCTCCGCATAAGTCTCGCGGGGCTCGGT
CAAGAACTTCCAACCTTCTGCGCAGAAGGGTGTAGGTTCTCGCAG
Found at i:157710 original size:21 final size:21
Alignment explanation
Indices: 157684--157726 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
157674 TTTCGAACTC
157684 TCTTTCTTTCTTTCTTTTCTT
1 TCTTTCTTTCTTTCTTTTCTT
157705 TCTTTCTTTCTTTCTTTTCTT
1 TCTTTCTTTCTTTCTTTTCTT
157726 T
1 T
157727 TTGGGGTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (21 bp):
TCTTTCTTTCTTTCTTTTCTT
Left flanking sequence: Indices 157184 -- 157683
TCCCCTCGCACGTGCCGGACCGACTCCTTCGTGCGTGCAAAAGTTTCATTCGTGCAAAGAATCTT
TTCCTTCCCCTTCACCGCTGCGCTCAGCAATCAATCTTTTTCGGACGGATTGAAGAGCTTGCTTG
CTTTTCCCCGCTGCGCGAAGCAGAAGTTCCCAACCCTTCTTGCCGCCAACCCGGTGGGATACTTG
CTTGCTTTCTTTAAAGTGTGCAGAAGAAGTTAGTTTCTTCTGCAAGAAGCAGCAGAAGTCTGCTG
CGAAAGCAGCCGCACTCTGTTCACACCTTTAAATTCGTGCGCAGGGGTTGTTTGTTGCTATCCGT
GCAAGCCTACCTTTGTAAGCTGGCAAGCAAGAAACTTTTCGTGCGTGCACCCGGTTGCAGAGCAG
AGCTTTTTGGTTCCAAAAAGCAACCGCCCCCCGCACGAAAAGTTTCGAAATGACAAAGGCACGGC
AACTTTCTTTCTTTCTCTCTTTCGCTTTCTTTAACTTTCGAACTC
Right flanking sequence: Indices 157727 -- 158226
TTGGGGTGTTGTTTGGTTGGCCCCAAACCAAAAATAAAGTTGCACACCTTGGTTCCAAAAAGTGT
GAACTTCTGCACTGCACGAAAAGGTTGTTTCGAAAACTGTGGCAACTTTCTGCACTCATTCGTAG
TGGCTAAACATCCGGGGAAGCGGTGGCACTCCTTGGAACCAAAGAGTTCCCTCATTCGCTTACAA
AGGTAGGCACGGATTCAATCGCTTAAACAGTCGGGATCCAAGGTGTGCAGAAGGTTGTTTGAATC
TGAGCGCAGCTTTCCCCCGTGCGAGAAGGAGAACCCTACAGGACGGATCAAAAAAGAGTGCAACC
TTTTCCCCTGCAGGCAGGGGAAAAGGTTGTTTCTTTCTGAGCGCAGGGGAAGGGGACTTTTGGTT
GCTTGCGAAGGTTCTAACGCTCTTTCAGGTGTCCCACTCTCCGCATAAGTCTCGCGGGGCTCGGT
CAAGAACTTCCAACCTTCTGCGCAGAAGGGTGTAGGTTCTCGCAG
Found at i:160743 original size:5 final size:5
Alignment explanation
Indices: 160733--160759 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
160723 CAGGGGTTCT
160733 CCTCC CCTCC CCTCC CCTCC CCTCC CC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CC
160760 GGGGAAGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 160233 -- 160732
TACAATCCCTGCCGGCCTACGCCTTTAGGCATGCTTGGCTTTTCAGCGTCTGAGGGCAACCGTTA
AACTGGCTGCTTTCATTCGAAACAACCTTTTCGTGCGGGGATTCTAAGGTTTCAAGTTGGTTGCA
GAGCAGAGCAGAGCAGACAGTTGTTCCAAGGACTTCCAAAAAGCAAGCAGAAGTCTCTTCTGAGC
GCAGCGAAGCAGAAGCCCTTCTGCGGGCCGCTTTAAAGTTGGACCAAGAAGGGGGTGGGTTGTTT
GTGCGCAGCGGGAACAACCCTTCTGGTTGCTTCGCGCAGGGGTTCTCCTCCCCTCCCCGGGGAGG
GGAGGCTTCTGCGAACTTCTGCTCCCAAAAAGCAAGCAGGCAGCAAAAGGTTGTTGGTTGTTTGG
AAGTTCTTGACCGAGCGCAGGGGTAACTTTTCCCCACAAACTTCAGAGGGATATAAGAGAGAGCA
GAAGTTCACACAAACTTCTTGGGTTGCCTTCTGCGCAGGGGTTCT
Right flanking sequence: Indices 160760 -- 161259
GGGGAAGGGTAACTTCTGGCCGTTCTTTGAACCACTCTTTCCCCCGCAGGGGAAGCAGAAGGGTG
TAAGTTCTCGCAGCCCCAACTCCTGGCTCGGTCAAGAACTTCCAACAACCCTCCTGCCACCTCTG
GAACCCCTGCCACCTCTTCAAACCCCTGCGCTCGGTCAAGAACACCCTTCTGCAAACCTCATTGG
CACGTTAAATGGGGGAAGACCTTGAAAGACTAAGTCGGGAGAGTGGGACACCTTGGATCCCGACA
ACTGTATTTGCCAGGCAACCTCGCTTGCTTGCTTTTTTGGTCAAATTCGAAGTGGCACGAAGGCC
CAGGTTTCTGTTCCACGGAACGCTTCTATTGCATCTATACACAAAGATTCGTAATCTGTTGAACC
AGCCCTTTGAAAAAGGGTATTTATCCCGGCAAGGGAGAAACGGGTAAATTGCCCTTTCCCAGCCT
CTAGGTAGATTGTCTGACGGCCCGGGAATAATATCTTTCTAGGAA
Found at i:160915 original size:19 final size:18
Alignment explanation
Indices: 160877--160918 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
160867 CAACAACCCT
**
160877 CCTGCCACCTCTGGAACC
1 CCTGCCACCTCTCAAACC
160895 CCTGCCACCTCTTCAAACC
1 CCTGCCACCTC-TCAAACC
160914 CCTGC
1 CCTGC
160919 GCTCGGTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.17, C:0.52, G:0.12, T:0.19
Consensus pattern (18 bp):
CCTGCCACCTCTCAAACC
Left flanking sequence: Indices 160377 -- 160876
AGACAGTTGTTCCAAGGACTTCCAAAAAGCAAGCAGAAGTCTCTTCTGAGCGCAGCGAAGCAGAA
GCCCTTCTGCGGGCCGCTTTAAAGTTGGACCAAGAAGGGGGTGGGTTGTTTGTGCGCAGCGGGAA
CAACCCTTCTGGTTGCTTCGCGCAGGGGTTCTCCTCCCCTCCCCGGGGAGGGGAGGCTTCTGCGA
ACTTCTGCTCCCAAAAAGCAAGCAGGCAGCAAAAGGTTGTTGGTTGTTTGGAAGTTCTTGACCGA
GCGCAGGGGTAACTTTTCCCCACAAACTTCAGAGGGATATAAGAGAGAGCAGAAGTTCACACAAA
CTTCTTGGGTTGCCTTCTGCGCAGGGGTTCTCCTCCCCTCCCCTCCCCTCCCCTCCCCGGGGAAG
GGTAACTTCTGGCCGTTCTTTGAACCACTCTTTCCCCCGCAGGGGAAGCAGAAGGGTGTAAGTTC
TCGCAGCCCCAACTCCTGGCTCGGTCAAGAACTTCCAACAACCCT
Right flanking sequence: Indices 160919 -- 161418
GCTCGGTCAAGAACACCCTTCTGCAAACCTCATTGGCACGTTAAATGGGGGAAGACCTTGAAAGA
CTAAGTCGGGAGAGTGGGACACCTTGGATCCCGACAACTGTATTTGCCAGGCAACCTCGCTTGCT
TGCTTTTTTGGTCAAATTCGAAGTGGCACGAAGGCCCAGGTTTCTGTTCCACGGAACGCTTCTAT
TGCATCTATACACAAAGATTCGTAATCTGTTGAACCAGCCCTTTGAAAAAGGGTATTTATCCCGG
CAAGGGAGAAACGGGTAAATTGCCCTTTCCCAGCCTCTAGGTAGATTGTCTGACGGCCCGGGAAT
AATATCTTTCTAGGAAAAGGCCCTTCTCGGATAGATTTATTCCTATTCACGCTTATCCATCACTA
CAACTTGCGAAAATCCATTATTGGGCGGGCCCAGCCAGATTAATGTATTATTTATCGATAAAGGC
CTATCGGCTCCTCCCCGCAGCATATAGAATATCTATTGGTTGAAT
Found at i:162273 original size:12 final size:12
Alignment explanation
Indices: 162256--162280 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
162246 AGTTGTTCCA
162256 CTCTCCCTCCTT
1 CTCTCCCTCCTT
162268 CTCTCCCTCCTT
1 CTCTCCCTCCTT
162280 C
1 C
162281 CCAAAATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCTCCCTCCTT
Left flanking sequence: Indices 161756 -- 162255
TATGTCCATTCTTCGGAAAGCGTTTCTCGATTCTGAAATTCCTGGGAGGAGCAGCCCTTCCTAGG
TACAGCACACGCTTTATTCGCGAGCTTTTCCCGAATCGATCGATTCTCTTAACACTAAGTCAGTT
ATTCATTATGAAGGCAGTCTTATCCCACGGAATTCTTCGGTGCCAAGAGAACCAATTGCTGCTTC
GACAGCAAAAGTGGTCATAAGGATCCGTAAACTATCGTACTTAAAGGCTATCTACGATAGAGGCT
TCATAAAGCTGCTTTTGAAGTTCCGTTAATTAAACAGAAAACGCTTTGCATTTTCGGCGTGGGGG
CCGGGCAGGGAGGGGCCCCTCCCCACCAGGGGCAAGCAATTCTTATGGGCAATTTACCCAGCCAG
AAGAGTGCCTATTGGCACGCACGGTAAAGCGCTTATCAGCGCTTTACCCCGGCAAATACAGTTGT
CGGGATCCAAGACCCGTTAAACGAGTCGAGATCCAAGTTGTTCCA
Right flanking sequence: Indices 162281 -- 162780
CCAAAATCTTGAATTCCTGCCTAACGAGAGAGTAGAGTGAGGAGCATATCGAGTGGGCAGCCGCC
CCAGCCTTGCCTTTCCTGCATCTTCGTAGCGGCATATAATAGGAAGGTGTTGGAGCTGCTCTGTA
ATCTCTTTGCTAACTTTCAGGTATAAACTCTTAGAAGTCGGGATCCAAGGTGCCCCGGTTCAAAA
AAGTCTGAGCGCAGGGGTTTCCAGAGATGGCAGGAGTTCTTCTGCTTTCACCCACTCGTAGCAGG
GTAAAATAACTTCTGCTCTCTCTTATATCCCTCTGAAGGTTGGTTGTTTGTGGGGAAAAGTTACC
CCTGCGCTCGGTCAAGAACTTCCAAACTCCTGCCTCCTACCAGTTTTCAAAGTCCCGGTTCATCC
TTTGACGGGCGCAGTTCATTGGTTGATATGCCAATCGTTCCGTTTAAGTGCATGAATATCTCTTT
GAAGACCTGCCTTGTCCCTAGTGCATCCGACCTGCCTGTACGACC
Found at i:164798 original size:4 final size:4
Alignment explanation
Indices: 164789--164879 Score: 182
Period size: 4 Copynumber: 22.8 Consensus size: 4
164779 ACAACTTTAA
164789 AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC
1 AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC
164837 AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGG
1 AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGGC AGG
164880 AAGTTTAGGA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 87 1.00
ACGTcount: A:0.25, C:0.24, G:0.51, T:0.00
Consensus pattern (4 bp):
AGGC
Left flanking sequence: Indices 164289 -- 164788
ATGCTGTTTTTCAAGCATGGGGGAGAGTGGACTTTGCGCGCGCGCGCAAAGGTCTTCCCGGGGAA
CCCTATCGGTCGAGTGTCTTCCCCTCTCACTATCCTGAACTTATTCCCCTGCGCGAAGAACCTTC
TTGCCGCCCTTCTTGGCAGGCAGCAAAAGGTTGTTGGTTGTTTGAAAGCAGAAGAACTTCTGCAA
ACCCCCGCTGCGCGAAGATTCAACCGCCAACCCTTCTTGGTCCTTTGAAAGAGGGCGGGGACCAA
AAGAACTTTCTTCGCTGCGCTCAGAAAGCAAGCAAGCTCTTTTGGCACGGCACTTAAAGCGTGCG
TGCGTGTTGAAATCCTTGGGGAGGTTAGGTTCTGAAAGAGCATCTATCTATGTCTGTCCGTCCCT
CCTGGGTAGGGTGGGAAGGTAAGGGCATTGATACCATCCTCCGTAGGGTAAAAAAGGGAAGAGCC
CCCCGCTCAGATACAAAGCAGCATCAGAGGCAAGAACAACTTTAA
Right flanking sequence: Indices 164880 -- 165379
AAGTTTAGGAACTTTCATTAACGAGAAAGGGTTTCCATTTGGAGAACCGGTGGGTTCAATCCAAG
ACAAGGAGGGTTTGGGAACAACTACAATGAGGGGGTTGGGAAGCAGCACAGGGAACAACTTATTT
ACCCGTTGGAAGCAGCATCAGCTTTGGGCAATAACAACTGAAGGTTTGGAAACATTAACAACAAG
AATGAGTCGTGACCGGGTCGGAGTTACCTCGTCCTTTGGATAAAAGCAGCCAGCTTTATCATCGC
TCAAAGGAAGGATAAAGCTGGCTGCTGCTTTCATCTAGCGAAGTACTTTTTTTGCGCGCGCGCTT
CTAGTTGACTTATAAAGTTGGTTGCGTAGAGCGCCCCGGAGCGCTTCTCCCACCACCTGGTAGTA
TCGATCAAGGTATTCTGCGAACCACCCAACCTAAGGAAGCGTGCTCGATCCTGACCTTAGAGCCT
ATAACCTATTCCTGACATTAAAACCTGCCCGAGCTATCGATGCGC
Found at i:165678 original size:30 final size:30
Alignment explanation
Indices: 165642--165720 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
165632 GTGGTGTTTC
* * ** *
165642 TAGGCCGAGAGCGCCTAGGATGGGATTGTA
1 TAGGCCGGGAGCGCCTAGGATCGGAAGGGA
165672 TAGGCCGGGAGCGCCTAGGATCGGAAGGGA
1 TAGGCCGGGAGCGCCTAGGATCGGAAGGGA
165702 TAGGCCGGGAGCGCCTAGG
1 TAGGCCGGGAGCGCCTAGG
165721 CTTGGATAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.22, C:0.20, G:0.44, T:0.14
Consensus pattern (30 bp):
TAGGCCGGGAGCGCCTAGGATCGGAAGGGA
Left flanking sequence: Indices 165142 -- 165641
AAAGGAAGGATAAAGCTGGCTGCTGCTTTCATCTAGCGAAGTACTTTTTTTGCGCGCGCGCTTCT
AGTTGACTTATAAAGTTGGTTGCGTAGAGCGCCCCGGAGCGCTTCTCCCACCACCTGGTAGTATC
GATCAAGGTATTCTGCGAACCACCCAACCTAAGGAAGCGTGCTCGATCCTGACCTTAGAGCCTAT
AACCTATTCCTGACATTAAAACCTGCCCGAGCTATCGATGCGCCCTGGATGCTGACTCGCCTAGA
AATAAGCTCTTCTTTGGATGCCGACCCTAGACCGAAAACCAATCGACTGGATCCGAGGAAGCTCT
GGATGCTGATCCGCTGATGAGCGGACCTATGGATCCTGAATGTAGATCCTGAATGGATCCCGACC
TGCTGACCGAAGCTCTCAATCTGAGGAAGCTCTCCCATATCTCGGAGTGGAGTGTGTGTTTTCGG
CTGGGAGCCCGGGGAAGCAGGTGTCTCTCGAAACTGTGGTGTTTC
Right flanking sequence: Indices 165721 -- 166220
CTTGGATAGGGCGGCCGGGGAAGGGCTAAGCCGGCCGGGAGCGCCTGGGATTCCGCTTTGGGGTT
GGCTAGGCCTGGTCGGCCTGGGACTGGTTCGCTTCGCTCAGTGAACGTATGCTTCGCTTCGCTCA
GTGAACCTATCCTTCGCACCCGAGTCAAGCTATGCTTCGCTTTGCTCAACTCGGGTGTTCGCTTC
GCTCAGTCAACAGGGACTGTCGCTTCGCCCAGTCAAACGTACCGGTTCGCTTCGCTCAGTCAAGA
CTAACGGTGGGGGTTGGCTCACCTCGTGAAAACTCTCAGAACCCACTGGTTCGCTTCGCAACTCA
ACCCTCTGGTGGGGTGAGTGCTAGGTTGCTTTGCTCATGGGCTAGGTTGCTTCGCTCATGGGCTA
GGTTGCTTTGCTGACTCCAGGGATAGGTGGCTTCGCTCAGGGTAGGCTAGGTTGGCTTGGCTCAG
AGATAAGAGATATAAAGAAAAGCAATAGGCTATGTTTATAAAGGC
Found at i:165847 original size:25 final size:25
Alignment explanation
Indices: 165813--165867 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
165803 CTGGGACTGG
* *
165813 TTCGCTTCGCTCAGTGAACGTATGC
1 TTCGCTTCGCTCAGTGAACCTATCC
165838 TTCGCTTCGCTCAGTGAACCTATCC
1 TTCGCTTCGCTCAGTGAACCTATCC
165863 TTCGC
1 TTCGC
165868 ACCCGAGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.15, C:0.33, G:0.20, T:0.33
Consensus pattern (25 bp):
TTCGCTTCGCTCAGTGAACCTATCC
Left flanking sequence: Indices 165313 -- 165812
CTCGATCCTGACCTTAGAGCCTATAACCTATTCCTGACATTAAAACCTGCCCGAGCTATCGATGC
GCCCTGGATGCTGACTCGCCTAGAAATAAGCTCTTCTTTGGATGCCGACCCTAGACCGAAAACCA
ATCGACTGGATCCGAGGAAGCTCTGGATGCTGATCCGCTGATGAGCGGACCTATGGATCCTGAAT
GTAGATCCTGAATGGATCCCGACCTGCTGACCGAAGCTCTCAATCTGAGGAAGCTCTCCCATATC
TCGGAGTGGAGTGTGTGTTTTCGGCTGGGAGCCCGGGGAAGCAGGTGTCTCTCGAAACTGTGGTG
TTTCTAGGCCGAGAGCGCCTAGGATGGGATTGTATAGGCCGGGAGCGCCTAGGATCGGAAGGGAT
AGGCCGGGAGCGCCTAGGCTTGGATAGGGCGGCCGGGGAAGGGCTAAGCCGGCCGGGAGCGCCTG
GGATTCCGCTTTGGGGTTGGCTAGGCCTGGTCGGCCTGGGACTGG
Right flanking sequence: Indices 165868 -- 166367
ACCCGAGTCAAGCTATGCTTCGCTTTGCTCAACTCGGGTGTTCGCTTCGCTCAGTCAACAGGGAC
TGTCGCTTCGCCCAGTCAAACGTACCGGTTCGCTTCGCTCAGTCAAGACTAACGGTGGGGGTTGG
CTCACCTCGTGAAAACTCTCAGAACCCACTGGTTCGCTTCGCAACTCAACCCTCTGGTGGGGTGA
GTGCTAGGTTGCTTTGCTCATGGGCTAGGTTGCTTCGCTCATGGGCTAGGTTGCTTTGCTGACTC
CAGGGATAGGTGGCTTCGCTCAGGGTAGGCTAGGTTGGCTTGGCTCAGAGATAAGAGATATAAAG
AAAAGCAATAGGCTATGTTTATAAAGGCTAGGTTACTTCGCTAACAAGACAGAGGCTAGGTTGGT
TTGGCTCACTCGGTTGGAATGAGTGGGTTGCTTGGCTGACTATAAGGTTTACAAATAAATCTGAG
CGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAA
Found at i:165938 original size:26 final size:27
Alignment explanation
Indices: 165907--165978 Score: 85
Period size: 26 Copynumber: 2.7 Consensus size: 27
165897 CAACTCGGGT
* *
165907 GTTCGCTTCGCTCAGTCAACAGGGA-CT
1 GTTCGCTTCGCTCAGTCAA-ACGGACCG
* *
165934 G-TCGCTTCGCCCAGTCAAACGTACCG
1 GTTCGCTTCGCTCAGTCAAACGGACCG
165960 GTTCGCTTCGCTCAGTCAA
1 GTTCGCTTCGCTCAGTCAA
165979 GACTAACGGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 3 0.08
26 18 0.47
27 17 0.45
ACGTcount: A:0.18, C:0.33, G:0.24, T:0.25
Consensus pattern (27 bp):
GTTCGCTTCGCTCAGTCAAACGGACCG
Left flanking sequence: Indices 165407 -- 165906
GCTCTTCTTTGGATGCCGACCCTAGACCGAAAACCAATCGACTGGATCCGAGGAAGCTCTGGATG
CTGATCCGCTGATGAGCGGACCTATGGATCCTGAATGTAGATCCTGAATGGATCCCGACCTGCTG
ACCGAAGCTCTCAATCTGAGGAAGCTCTCCCATATCTCGGAGTGGAGTGTGTGTTTTCGGCTGGG
AGCCCGGGGAAGCAGGTGTCTCTCGAAACTGTGGTGTTTCTAGGCCGAGAGCGCCTAGGATGGGA
TTGTATAGGCCGGGAGCGCCTAGGATCGGAAGGGATAGGCCGGGAGCGCCTAGGCTTGGATAGGG
CGGCCGGGGAAGGGCTAAGCCGGCCGGGAGCGCCTGGGATTCCGCTTTGGGGTTGGCTAGGCCTG
GTCGGCCTGGGACTGGTTCGCTTCGCTCAGTGAACGTATGCTTCGCTTCGCTCAGTGAACCTATC
CTTCGCACCCGAGTCAAGCTATGCTTCGCTTTGCTCAACTCGGGT
Right flanking sequence: Indices 165979 -- 166478
GACTAACGGTGGGGGTTGGCTCACCTCGTGAAAACTCTCAGAACCCACTGGTTCGCTTCGCAACT
CAACCCTCTGGTGGGGTGAGTGCTAGGTTGCTTTGCTCATGGGCTAGGTTGCTTCGCTCATGGGC
TAGGTTGCTTTGCTGACTCCAGGGATAGGTGGCTTCGCTCAGGGTAGGCTAGGTTGGCTTGGCTC
AGAGATAAGAGATATAAAGAAAAGCAATAGGCTATGTTTATAAAGGCTAGGTTACTTCGCTAACA
AGACAGAGGCTAGGTTGGTTTGGCTCACTCGGTTGGAATGAGTGGGTTGCTTGGCTGACTATAAG
GTTTACAAATAAATCTGAGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAG
AAAGCAAGCAAGTTGGACCAAGAAGGGTTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGCAGAAGTTTTCGCAGCGAAGAGAAGAAATGCCTGCA
Found at i:165988 original size:27 final size:26
Alignment explanation
Indices: 165907--165988 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 26
165897 CAACTCGGGT
*** *
165907 GTTCGCTTCGCTCAGTCAACAGGGACT
1 GTTCGCTTCGCTCAGTCAA-ACTAACG
* *
165934 G-TCGCTTCGCCCAGTCAAACGTACCG
1 GTTCGCTTCGCTCAGTCAAAC-TAACG
165960 GTTCGCTTCGCTCAGTCAAGACTAACG
1 GTTCGCTTCGCTCAGTCAA-ACTAACG
165987 GT
1 GT
165989 GGGGGTTGGC
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
25 1 0.02
26 18 0.41
27 23 0.52
28 2 0.05
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (26 bp):
GTTCGCTTCGCTCAGTCAAACTAACG
Left flanking sequence: Indices 165407 -- 165906
GCTCTTCTTTGGATGCCGACCCTAGACCGAAAACCAATCGACTGGATCCGAGGAAGCTCTGGATG
CTGATCCGCTGATGAGCGGACCTATGGATCCTGAATGTAGATCCTGAATGGATCCCGACCTGCTG
ACCGAAGCTCTCAATCTGAGGAAGCTCTCCCATATCTCGGAGTGGAGTGTGTGTTTTCGGCTGGG
AGCCCGGGGAAGCAGGTGTCTCTCGAAACTGTGGTGTTTCTAGGCCGAGAGCGCCTAGGATGGGA
TTGTATAGGCCGGGAGCGCCTAGGATCGGAAGGGATAGGCCGGGAGCGCCTAGGCTTGGATAGGG
CGGCCGGGGAAGGGCTAAGCCGGCCGGGAGCGCCTGGGATTCCGCTTTGGGGTTGGCTAGGCCTG
GTCGGCCTGGGACTGGTTCGCTTCGCTCAGTGAACGTATGCTTCGCTTCGCTCAGTGAACCTATC
CTTCGCACCCGAGTCAAGCTATGCTTCGCTTTGCTCAACTCGGGT
Right flanking sequence: Indices 165989 -- 166488
GGGGGTTGGCTCACCTCGTGAAAACTCTCAGAACCCACTGGTTCGCTTCGCAACTCAACCCTCTG
GTGGGGTGAGTGCTAGGTTGCTTTGCTCATGGGCTAGGTTGCTTCGCTCATGGGCTAGGTTGCTT
TGCTGACTCCAGGGATAGGTGGCTTCGCTCAGGGTAGGCTAGGTTGGCTTGGCTCAGAGATAAGA
GATATAAAGAAAAGCAATAGGCTATGTTTATAAAGGCTAGGTTACTTCGCTAACAAGACAGAGGC
TAGGTTGGTTTGGCTCACTCGGTTGGAATGAGTGGGTTGCTTGGCTGACTATAAGGTTTACAAAT
AAATCTGAGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCAAGCA
AGTTGGACCAAGAAGGGTTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGC
AGAAGTTTTCGCAGCGAAGAGAAGAAATGCCTGCAACACCGCAAC
Found at i:166091 original size:21 final size:21
Alignment explanation
Indices: 166065--166122 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
166055 TGGGGTGAGT
166065 GCTAGGTTGCTTTGCTCATGG
1 GCTAGGTTGCTTTGCTCATGG
*
166086 GCTAGGTTGCTTCGCTCATGG
1 GCTAGGTTGCTTTGCTCATGG
166107 GCTAGGTTGCTTTGCT
1 GCTAGGTTGCTTTGCT
166123 GACTCCAGGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.09, C:0.21, G:0.33, T:0.38
Consensus pattern (21 bp):
GCTAGGTTGCTTTGCTCATGG
Left flanking sequence: Indices 165565 -- 166064
CCCATATCTCGGAGTGGAGTGTGTGTTTTCGGCTGGGAGCCCGGGGAAGCAGGTGTCTCTCGAAA
CTGTGGTGTTTCTAGGCCGAGAGCGCCTAGGATGGGATTGTATAGGCCGGGAGCGCCTAGGATCG
GAAGGGATAGGCCGGGAGCGCCTAGGCTTGGATAGGGCGGCCGGGGAAGGGCTAAGCCGGCCGGG
AGCGCCTGGGATTCCGCTTTGGGGTTGGCTAGGCCTGGTCGGCCTGGGACTGGTTCGCTTCGCTC
AGTGAACGTATGCTTCGCTTCGCTCAGTGAACCTATCCTTCGCACCCGAGTCAAGCTATGCTTCG
CTTTGCTCAACTCGGGTGTTCGCTTCGCTCAGTCAACAGGGACTGTCGCTTCGCCCAGTCAAACG
TACCGGTTCGCTTCGCTCAGTCAAGACTAACGGTGGGGGTTGGCTCACCTCGTGAAAACTCTCAG
AACCCACTGGTTCGCTTCGCAACTCAACCCTCTGGTGGGGTGAGT
Right flanking sequence: Indices 166123 -- 166622
GACTCCAGGGATAGGTGGCTTCGCTCAGGGTAGGCTAGGTTGGCTTGGCTCAGAGATAAGAGATA
TAAAGAAAAGCAATAGGCTATGTTTATAAAGGCTAGGTTACTTCGCTAACAAGACAGAGGCTAGG
TTGGTTTGGCTCACTCGGTTGGAATGAGTGGGTTGCTTGGCTGACTATAAGGTTTACAAATAAAT
CTGAGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCAAGCAAGTT
GGACCAAGAAGGGTTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAGAA
GTTTTCGCAGCGAAGAGAAGAAATGCCTGCAACACCGCAACCAACCCCAGAAGTTCCTCCAAGAA
GGGTAATGCGCAGCGGGAAAAGCAAGCAGGGCCGAACCAACCGGCAGCAAAAAAAAAAGCAGAAG
CAGAAGTTCACACAAACAACCCTTCTGCCTTAACCTCGCTGCGCT
Found at i:166407 original size:4 final size:4
Alignment explanation
Indices: 166398--166442 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
166388 AAGAAGGGTT
166398 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G
166443 CAGAAGTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
GAAA
Left flanking sequence: Indices 165898 -- 166397
AACTCGGGTGTTCGCTTCGCTCAGTCAACAGGGACTGTCGCTTCGCCCAGTCAAACGTACCGGTT
CGCTTCGCTCAGTCAAGACTAACGGTGGGGGTTGGCTCACCTCGTGAAAACTCTCAGAACCCACT
GGTTCGCTTCGCAACTCAACCCTCTGGTGGGGTGAGTGCTAGGTTGCTTTGCTCATGGGCTAGGT
TGCTTCGCTCATGGGCTAGGTTGCTTTGCTGACTCCAGGGATAGGTGGCTTCGCTCAGGGTAGGC
TAGGTTGGCTTGGCTCAGAGATAAGAGATATAAAGAAAAGCAATAGGCTATGTTTATAAAGGCTA
GGTTACTTCGCTAACAAGACAGAGGCTAGGTTGGTTTGGCTCACTCGGTTGGAATGAGTGGGTTG
CTTGGCTGACTATAAGGTTTACAAATAAATCTGAGCGCAGCAGACTTCTGCTGCCAAACAATTCT
TCTGCACACTTTAAAGAAAGCAAGCAAGTTGGACCAAGAAGGGTT
Right flanking sequence: Indices 166443 -- 166942
CAGAAGTTTTCGCAGCGAAGAGAAGAAATGCCTGCAACACCGCAACCAACCCCAGAAGTTCCTCC
AAGAAGGGTAATGCGCAGCGGGAAAAGCAAGCAGGGCCGAACCAACCGGCAGCAAAAAAAAAAGC
AGAAGCAGAAGTTCACACAAACAACCCTTCTGCCTTAACCTCGCTGCGCTCGGTAAAGGTAATAC
CTGCTTTTTTTTGGACCCGTGCGCAGCGGGGAAAAGAACTTATGCTTCCAACTGCCTTTAAAGCT
CTTCTCCGCAGAAGGGTGTTCTCGCGGGGCTCGGATAACTTCCAACCTTCTGCACATACGCAGAA
GGGTGTAAGTTCTCGCAGCCCCAACTTCTGGCTCGGTCAAGAACTTACCAACCTTCTGCCTGCCA
CCTCGCAGAAGTTACCCCTGCGCTCGGAGAACACCCTTCTGCACATACCTGCCACCTCCCTCTTA
TATCCCTCTGAAGTTTGTGGGGAATAAGTTACCCCTGCGCTCGGT
Found at i:167506 original size:5 final size:5
Alignment explanation
Indices: 167498--167548 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
167488 TTCCCTGGAA
167498 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
167548 C
1 C
167549 CGGTGCTCGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 166998 -- 167497
GTTGGTTGTTTGCGGTGTTGCAGGCAGCAGAAGAGACTTCTGCTGCTTCTGAGCGCAGCGGGGAA
AAGAACTCTTTGTTTTGTTTTGTTTTGTTCACACGGGTGTTCTTCGCTGCGCTCAGATTCTTTTG
TTTAAACCTTCACTTCGCTGCGCGAAGCAGAAGTCCCTTCTGGAGGCCCTTTGGGGAAGGGCCTT
CCCCCAAGAAGTGGCCGAACAACCTTGCCAGGTTGTTTCGGAGAACCTTCTGCAAGCAACAAACA
ACCTTCTGCACGGCACGAAAAGGTTGTTTCGAAATTACAAAGGGCCAAAAGGTTTGGGAACTTCT
GCTTCGCGCAGCGAAGTGAAGGTAGGCACGGATAGCAACTTTTAAGGTTCACCCCTGCGCACTCA
TTCGAATGAAAGCAGCCAGCCCAGTTGCCCTCATTCAAACAACCTGGCAAAGTCGGGATCCAAGT
TGTCCCACTCTCCCTGCCACCTCGCAGAAGGGCCCTTCCCTGGAA
Right flanking sequence: Indices 167549 -- 168048
CGGTGCTCGGAGAACTTACACCCTTCTGCACATACAGTTGCAGAAGGCACATACCTTGACCGAGC
GCAGGGCCGTTCCTCTCTCTTATATCCCTCTGAAGTTTGTGAGGAGAACCCCTCGGTAAAGGCAC
ATACCTGGGGAAGAGGTGGGAAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTCAA
GGCACATACCTCCGTAGCCTTTTGCGCGCCCTATCCTATTCCTCTTCCTCTGATTAGAGAAGTGA
CCCCGCACGCACGCAAGATTATCGACCGGTGCAGCGGGGATCCTGGTTGGGTTGCCGCTAGGCTG
CCGCCTTGGGATACCCTGTCGTGGAAGGACTGTAGCCTGTAGTCCAATCTCGTGTATCTAGGGTC
ATCCTCATATACGACTAGCTGCTTTTTTTGCTTTCGCCCAGAAAGCAAGCGGGGAAGGGGCGGCT
TTTCATTGGTATTACTTAGCTTAATCTTGATGGTTGGTGTTTTTT
Found at i:168911 original size:14 final size:14
Alignment explanation
Indices: 168892--168924 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
168882 GACGGGCCGG
168892 CCCGGCCCGGGTTC
1 CCCGGCCCGGGTTC
168906 CCCGGCCCGGGTTC
1 CCCGGCCCGGGTTC
168920 CCCGG
1 CCCGG
168925 GACTTGCCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.36, T:0.12
Consensus pattern (14 bp):
CCCGGCCCGGGTTC
Left flanking sequence: Indices 168392 -- 168891
TGGCCGCCATAAGAAAGCCTTTGCTCCTTTTATTCCTAGGTAAAAGCCGGACCGTCGGGGTCACA
GGGCTTTAGCGCAGCCATCCTGGTAATGACTTTCCAATTGGCCGGGCTTGGCCGGGAAGACGCGC
AAAGCGGTCCGGGCGCTATGCTAGCCCGCCTTTGTCTTGTAACTGCTGGTTAGCATCATAGCTAA
ACCCCGGCCTGCCCCACTACTTTTGTTTTTGTTTTGTTTTGAAAGTCCCCCCTCTATTTATTTGG
AGGTTTACAATTTATCCCGTCCCGGGGTCCTTGAAAAGAAAGCGCTACGTGCACAGGGGAAAAGG
TTGTTTGTAGGGTTGTGGTGTTTGCCAAAACAATTCCTCCGCGGGCCGCCATCTTCTTAGCCCTG
CTTTTCAATTATCCACTCGCTCCGGTTCCTTTTAATGGGTGAACCGAGTAAGCACTGGGGGAAGG
CCCCGCTTTCGTTGATGGTCTTCCGCTTCTCCCGGGACGGGCCGG
Right flanking sequence: Indices 168925 -- 169424
GACTTGCCGGGACGGGGAACCCGTTCCGAGATGGAAATACGCTGGGGAAGGAGCGCGATGATAAG
CTTAAGCATGAGCTGTCGAGTGGATGGTTCGGCTGGGCCTTTCAGTGAAGCATAGTGATTAGTTC
GAGCCAGCGTCCCCTGGGGCATAGATAGAGGCTTGGGCCAAAAGTTTCAACTCAACTCCTATGGC
TGGCGCCCCGGCTTCTTTAGCCTTTTTATTTAGCCACTTCGATTTCTACACGTCATAATGGGGAG
GGCTCGATACTAGCCTGCGGCTTAGAACTAACTTTTAGATGCGACGCGGGCTTTTCTTGAGAGTT
GAGAGTTGGGAACAACACTGCTCTTTCAAGAGCGATTGTCATACTTCTCTCTCCGGCAGCGACTA
AGCCTTCCACTCCTGTATACCAAGATTATACTCCACTGGGGGGGCACATGCGCTTTCCTTTGCTT
TGAGGCAAGGTTCAATCTTCCAGCCCTGTCCCGAGCAGAACAAGA
Found at i:170493 original size:5 final size:5
Alignment explanation
Indices: 170483--170517 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
170473 AGCGCAGCTT
170483 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
170518 GGAACAGCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 169983 -- 170482
AAAAGGTTGGAAGTTCTTGACCGAGCACCGGGGTTTTCCCCACAAACAACCAACCTTCAGAGTAA
TATAAGAGAGAGCAGGAGTTATTTTACCGCGGGCCTTCCCCCGGGACAGGAGGGTGTTCTCTTCC
CCTGCGCTCGGTCAAGAACACCCTTCTGCCTGCTACGAGTGGGACAACTTGGATCCCGACTTTTT
TTTCATTCGAATGAGGGCCCTTCCCCCGTGCCTACCTTTGTAAGCGAAACAACCTTTTCGGCAGG
GCAGAAAGTTTGTTTGTTGCCACAGTTTTCGTGGCCGAAAAGGGTTGGGTTGTTGTTTCGAAAAC
TGAATGAGTGCAGAAGTTGCTTGCTTGCTTGCTTGCAGGGGAAAAGGTTCTTTCCCCTCCCCTCC
CCCGTGCCAGCCGACCTTTGTAAGCGAAACTCTTCGGCCACGGTTGGGGGAAGGCCCTTCCCCTC
CCCAAAGGTGTGCAGAAGGTTGCGCTTGCTTTCTGAGCGCAGCTT
Right flanking sequence: Indices 170518 -- 171017
GGAACAGCAAACTTTGTAGGCACGGATAGCAACAAACTGGGGGAAGGGCCCTTCCCCTGCGCACT
CATTCGGAGGCAAACAAACTTCTGCACGAAAAGGGGAGGGGCACGGATTTCCAAAACAGAACAAA
ACAAAACAAAGGTCCTTTTTGCTTGCTTGCTTGCTTTCTGAGCGCAGCTTTCCCCTCCCCGGAAC
AGCAAACTTTGTAGGCACGGGGGAAAGCCAGCCTTTCAAACAACCAACAACCTTTTGCCAACCAA
ACAACCTTCTCTTCTGCGCCCGAATTCGCTTACAAAGGATTTCCAAAACAGAACAAAGGTCCTTT
TTGCTTGCTTGCTTGCTTGCTTGCTTTCTGAGCGCAGCTTTCCCCTCCCCTCCCCTCCCCTCCCC
TCCCCTCCCCGGAACAGCAAACTTTGTAGGCACGGATTACTGCAGAACTGAACCCAAAAAGGAAG
AAATCAAGAAATCAAGAAAGAAATAAAAGAATCAATAAAGTTGCA
Found at i:170852 original size:4 final size:4
Alignment explanation
Indices: 170843--170868 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
170833 AAGGTCCTTT
170843 TTGC TTGC TTGC TTGC TTGC TTGC TT
1 TTGC TTGC TTGC TTGC TTGC TTGC TT
170869 TCTGAGCGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.23, T:0.54
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 170343 -- 170842
CAGGGGAAAAGGTTCTTTCCCCTCCCCTCCCCCGTGCCAGCCGACCTTTGTAAGCGAAACTCTTC
GGCCACGGTTGGGGGAAGGCCCTTCCCCTCCCCAAAGGTGTGCAGAAGGTTGCGCTTGCTTTCTG
AGCGCAGCTTTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCGGAACAGCAAACTTTGTAGG
CACGGATAGCAACAAACTGGGGGAAGGGCCCTTCCCCTGCGCACTCATTCGGAGGCAAACAAACT
TCTGCACGAAAAGGGGAGGGGCACGGATTTCCAAAACAGAACAAAACAAAACAAAGGTCCTTTTT
GCTTGCTTGCTTGCTTTCTGAGCGCAGCTTTCCCCTCCCCGGAACAGCAAACTTTGTAGGCACGG
GGGAAAGCCAGCCTTTCAAACAACCAACAACCTTTTGCCAACCAAACAACCTTCTCTTCTGCGCC
CGAATTCGCTTACAAAGGATTTCCAAAACAGAACAAAGGTCCTTT
Right flanking sequence: Indices 170869 -- 171368
TCTGAGCGCAGCTTTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCGGAACAGCAAACTTTG
TAGGCACGGATTACTGCAGAACTGAACCCAAAAAGGAAGAAATCAAGAAATCAAGAAAGAAATAA
AAGAATCAATAAAGTTGCACCGCTCCACCTTACCTTTTTTCGGTAAAAATTACCAAAGCAGGAGT
GCGCCTACGGGGAGGGGAGGGGAGACACCAGTCTTGCTTGAAAAATGTATTGGTCCAAAAATGAG
TAAAGGGCAGCACCCCGGAGATGAACGCAGCATCCCTCCCTTCCTTCACGTAGCTGCGCGGAGAA
CCAGCCAACCAACAACCTTTTGCCAACAACCTTTTGCCTTCTTGCCCTTAGAGGTTCTGAAAAAA
TGCAATAGATTTGCGGGTTGCTTTACCCCTTTGACATGAGATGGCCTGGAGGGCGATCTTTTTTT
GCCGGTAGCCCCCTTATCTCCTTATCTTTTAGGGCGTCAGCAGAG
Found at i:170893 original size:5 final size:5
Alignment explanation
Indices: 170883--170917 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
170873 AGCGCAGCTT
170883 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
170918 GGAACAGCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 170383 -- 170882
CCGACCTTTGTAAGCGAAACTCTTCGGCCACGGTTGGGGGAAGGCCCTTCCCCTCCCCAAAGGTG
TGCAGAAGGTTGCGCTTGCTTTCTGAGCGCAGCTTTCCCCTCCCCTCCCCTCCCCTCCCCTCCCC
TCCCCGGAACAGCAAACTTTGTAGGCACGGATAGCAACAAACTGGGGGAAGGGCCCTTCCCCTGC
GCACTCATTCGGAGGCAAACAAACTTCTGCACGAAAAGGGGAGGGGCACGGATTTCCAAAACAGA
ACAAAACAAAACAAAGGTCCTTTTTGCTTGCTTGCTTGCTTTCTGAGCGCAGCTTTCCCCTCCCC
GGAACAGCAAACTTTGTAGGCACGGGGGAAAGCCAGCCTTTCAAACAACCAACAACCTTTTGCCA
ACCAAACAACCTTCTCTTCTGCGCCCGAATTCGCTTACAAAGGATTTCCAAAACAGAACAAAGGT
CCTTTTTGCTTGCTTGCTTGCTTGCTTGCTTTCTGAGCGCAGCTT
Right flanking sequence: Indices 170918 -- 171417
GGAACAGCAAACTTTGTAGGCACGGATTACTGCAGAACTGAACCCAAAAAGGAAGAAATCAAGAA
ATCAAGAAAGAAATAAAAGAATCAATAAAGTTGCACCGCTCCACCTTACCTTTTTTCGGTAAAAA
TTACCAAAGCAGGAGTGCGCCTACGGGGAGGGGAGGGGAGACACCAGTCTTGCTTGAAAAATGTA
TTGGTCCAAAAATGAGTAAAGGGCAGCACCCCGGAGATGAACGCAGCATCCCTCCCTTCCTTCAC
GTAGCTGCGCGGAGAACCAGCCAACCAACAACCTTTTGCCAACAACCTTTTGCCTTCTTGCCCTT
AGAGGTTCTGAAAAAATGCAATAGATTTGCGGGTTGCTTTACCCCTTTGACATGAGATGGCCTGG
AGGGCGATCTTTTTTTGCCGGTAGCCCCCTTATCTCCTTATCTTTTAGGGCGTCAGCAGAGCTGC
TATTTAAAACACATTGCGCTTAAAGGTTGTTCGGCAATTCCATTA
Found at i:171221 original size:14 final size:14
Alignment explanation
Indices: 171202--171231 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
171192 AACCAGCCAA
171202 CCAACAACCTTTTG
1 CCAACAACCTTTTG
171216 CCAACAACCTTTTG
1 CCAACAACCTTTTG
171230 CC
1 CC
171232 TTCTTGCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.40, G:0.07, T:0.27
Consensus pattern (14 bp):
CCAACAACCTTTTG
Left flanking sequence: Indices 170702 -- 171201
CTCCCCGGAACAGCAAACTTTGTAGGCACGGGGGAAAGCCAGCCTTTCAAACAACCAACAACCTT
TTGCCAACCAAACAACCTTCTCTTCTGCGCCCGAATTCGCTTACAAAGGATTTCCAAAACAGAAC
AAAGGTCCTTTTTGCTTGCTTGCTTGCTTGCTTGCTTTCTGAGCGCAGCTTTCCCCTCCCCTCCC
CTCCCCTCCCCTCCCCTCCCCGGAACAGCAAACTTTGTAGGCACGGATTACTGCAGAACTGAACC
CAAAAAGGAAGAAATCAAGAAATCAAGAAAGAAATAAAAGAATCAATAAAGTTGCACCGCTCCAC
CTTACCTTTTTTCGGTAAAAATTACCAAAGCAGGAGTGCGCCTACGGGGAGGGGAGGGGAGACAC
CAGTCTTGCTTGAAAAATGTATTGGTCCAAAAATGAGTAAAGGGCAGCACCCCGGAGATGAACGC
AGCATCCCTCCCTTCCTTCACGTAGCTGCGCGGAGAACCAGCCAA
Right flanking sequence: Indices 171232 -- 171731
TTCTTGCCCTTAGAGGTTCTGAAAAAATGCAATAGATTTGCGGGTTGCTTTACCCCTTTGACATG
AGATGGCCTGGAGGGCGATCTTTTTTTGCCGGTAGCCCCCTTATCTCCTTATCTTTTAGGGCGTC
AGCAGAGCTGCTATTTAAAACACATTGCGCTTAAAGGTTGTTCGGCAATTCCATTATACTTTGAA
ATTTGCGGGTGTAAATTATATCATGACAAACTACAGATTTGTAGTAGGTGTAATTTATTGGCTCT
ATAACAGCAAAACATGCGCGCGCGTTTATTAGCAAAGCAACAACCAACATTAACGGCCGGCCGGC
TGCACTCCAGACTTCTATTGAGTGAAACGTACTGGCGTTAATCTATTAATTCCCCTGCTCCTGTC
CTGCCCTTTTTCCAGCAATAGGTTTTGCTTGCCCCCCCCCGAACTGTTCACCGGCGCAGAGCATT
GGATTTCATATTACGCCCGGGGTTTCTTGATTTATCTCTTTTTCC
Found at i:174999 original size:5 final size:5
Alignment explanation
Indices: 174989--175013 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
174979 GGAACAACTG
174989 TCTGC TCTGC TCTGC TCTGC TCTGC
1 TCTGC TCTGC TCTGC TCTGC TCTGC
175014 AACCAACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
TCTGC
Left flanking sequence: Indices 174489 -- 174988
TTTGTAAGCGAATGAGTGAACTTTTCCTTCCCCACAAACTTCAGAGGAATATAAGAGGGAGGCAG
AAGGTTGTTTGGAAGTTCTTGACCGAGCGCAGGGGAAGAGAACTTCTGCCAACGCAGGGGAAAAG
GTTGGAAGTTCTTGACCGAGCACCGGGGTTTTCCCCACAAACAACCAACCTTCAGAGTAATATAA
GAGAGAGCAGTAGTTATTTTACCGCGGGCCTTCCCCCGGGACAGGAGGGTGTTCTCTTCCCCTGC
GCTCGGTCAAGAACACCCTTCTGCCTGCTACGGGTGGGTGAAAGCAGAAGAACCCCTGCCACCCT
CTTATATCCCTCTTCAGGTTGTTTGTGGGGAAACCCCTGCGAAAACTTCTGCTTCTGCTTTTGGA
AATCCGTCGCAGAAGTTCTCTTCCCCTCCCAGGGGAGGGGAGAACCCCTGCGCTCAGATTCAAAC
AACCAACAACCTTTTGCAACCCTTCTGCACACCTTGGAACAACTG
Right flanking sequence: Indices 175014 -- 175513
AACCAACTTGAAACTTGCAACCCTTCTGCACGAAGAGTTTCGAAGTTACAAAGGTAGGCACAGGG
GAAAGAACCCAACTTTCAACCTTCTGCCGAAGAGTTTCGAAGTTACAGAGGACGTATTTTATCCG
TGCCTACCTTTGTCATCTCGTGGCACACCCCTTCTGCAAGCAACTTCTGCGGACCTTCTGCACGG
CACGAAAAGTTTCGAAATGACAAAGGCACGGCAACTTTTTGGGGTGTTGTTTGGTTGGCCCGTTG
CACACCTTTGGTTCCGTTCCAAAAAGTGTGAACTTCTGCCCTGCCGAAAAGGTTGGTTGTTTCGA
AACAACCAACCGCACCCGTTCACTCATTCGCTTACAAAGGTAGGCACGGGGGAAAAACAACAACC
AACCCGCCAAACAAACTCATTCTACGAAGGAACCTTTGCCCTCAGATGAAGGAAAAACCTCGAAA
AATGAATCGTTCCATTTGTGCGTGCCATTTTCGTGTATAGATGAA
Found at i:176631 original size:10 final size:11
Alignment explanation
Indices: 176603--176642 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
176593 TTTCCCAATT
176603 TAATT-TAATC
1 TAATTGTAATC
176613 -AATTGTAATC
1 TAATTGTAATC
176623 TAATT-TAATC
1 TAATTGTAATC
*
176633 CAATTGTAAT
1 TAATTGTAAT
176643 TTGATTTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
9 4 0.15
10 14 0.54
11 8 0.31
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (11 bp):
TAATTGTAATC
Left flanking sequence: Indices 176103 -- 176602
GCAGCATTCAGCCGAAGATGACTATCTATTAAGGTGTGAACAAAAAGAAAGCAGACTTCTGCTTC
GCGCAGCGAAGCGAAGGCTACCGGTTGAGACAAGCGAGTTTGTTTCCGTAGCGCAGTCTAAACGG
TAGCGCGGGGGCCAACTTTGATGAAAGCTTTATCCAAGAAGGTATGTGCAGAAGGTTGTTTGTTT
TCCGAGCGCAGGGGTTCTCCGAGGAACTTCTTGCCGGGGCCCGCTAAAAATGCAATTTATCCGCC
AACCTTCATCCGGTTTCATTATAACTTAGGCCTTCAGGGGAGGGGCTTGCCCGGCCAAAAAGTAA
GTTTGGGAATATCCCCGGCCTAGCTATAGGGATAGAGCGCGTTAGCGCGAAACCGGCGTCCCTGA
ACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCTCGGAAC
TTCTGCACATACCTTGGCAAAGCGCTTATCAGCGCTTTCCCAATT
Right flanking sequence: Indices 176643 -- 177142
TTGATTTAAGTGGGTTACAGAGTGGATGCCCTTCCTCGTACTCAACAAGTAGGGCTGGCTTTTCG
CATGAAGCCTTTGGAAATATGGCTTGCTTTCTCGGGTCATTCTTTGGCCAGTGAGGAGGAGTGTC
CGAGTGGCCGAAGGAGCACGATTGGAAGTCGTGTATGCGCTAATCCCGCATCGTGGGTTCGAATC
CCACCTCCTCCGTGAAGTCAGTCGAGGGCTTGATAATAAATCAGATACGCCGCCTCTAATTAAGT
TATTCGGTTTTCTATCAGAACAAGAGCGTAAAAGGGCGAAGGGAATTAGGAAGCTCGGGAGCATT
CCCAGTCGAAGAGACGAGGGAGAATTCAGAGGTATGTGCCTTTACCGAGCGCAGGGGAAGGCCCA
CAAACAACCAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGTTGCCTCCCGGATCCAAG
GAGTCCCTCTCGAACCTATGCGAGCTGTGTAACCTATGAAACAAG
Found at i:176649 original size:21 final size:20
Alignment explanation
Indices: 176599--176651 Score: 79
Period size: 21 Copynumber: 2.6 Consensus size: 20
176589 GCGCTTTCCC
176599 AATTTAATTTAATCAATTGT
1 AATTTAATTTAATCAATTGT
*
176619 AATCTAATTTAATCCAATTGT
1 AATTTAATTTAAT-CAATTGT
*
176640 AATTTGATTTAA
1 AATTTAATTTAA
176652 GTGGGTTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.47
Consensus pattern (20 bp):
AATTTAATTTAATCAATTGT
Left flanking sequence: Indices 176099 -- 176598
AGGAGCAGCATTCAGCCGAAGATGACTATCTATTAAGGTGTGAACAAAAAGAAAGCAGACTTCTG
CTTCGCGCAGCGAAGCGAAGGCTACCGGTTGAGACAAGCGAGTTTGTTTCCGTAGCGCAGTCTAA
ACGGTAGCGCGGGGGCCAACTTTGATGAAAGCTTTATCCAAGAAGGTATGTGCAGAAGGTTGTTT
GTTTTCCGAGCGCAGGGGTTCTCCGAGGAACTTCTTGCCGGGGCCCGCTAAAAATGCAATTTATC
CGCCAACCTTCATCCGGTTTCATTATAACTTAGGCCTTCAGGGGAGGGGCTTGCCCGGCCAAAAA
GTAAGTTTGGGAATATCCCCGGCCTAGCTATAGGGATAGAGCGCGTTAGCGCGAAACCGGCGTCC
CTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCTCG
GAACTTCTGCACATACCTTGGCAAAGCGCTTATCAGCGCTTTCCC
Right flanking sequence: Indices 176652 -- 177151
GTGGGTTACAGAGTGGATGCCCTTCCTCGTACTCAACAAGTAGGGCTGGCTTTTCGCATGAAGCC
TTTGGAAATATGGCTTGCTTTCTCGGGTCATTCTTTGGCCAGTGAGGAGGAGTGTCCGAGTGGCC
GAAGGAGCACGATTGGAAGTCGTGTATGCGCTAATCCCGCATCGTGGGTTCGAATCCCACCTCCT
CCGTGAAGTCAGTCGAGGGCTTGATAATAAATCAGATACGCCGCCTCTAATTAAGTTATTCGGTT
TTCTATCAGAACAAGAGCGTAAAAGGGCGAAGGGAATTAGGAAGCTCGGGAGCATTCCCAGTCGA
AGAGACGAGGGAGAATTCAGAGGTATGTGCCTTTACCGAGCGCAGGGGAAGGCCCACAAACAACC
AACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGTTGCCTCCCGGATCCAAGGAGTCCCTC
TCGAACCTATGCGAGCTGTGTAACCTATGAAACAAGCCATCATCA
Found at i:177712 original size:18 final size:18
Alignment explanation
Indices: 177689--177726 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
177679 ATCTTTTGGC
177689 AATTGGAGGTCCAAAACA
1 AATTGGAGGTCCAAAACA
177707 AATTGGAGGTCCAAAACA
1 AATTGGAGGTCCAAAACA
177725 AA
1 AA
177727 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.16
Consensus pattern (18 bp):
AATTGGAGGTCCAAAACA
Left flanking sequence: Indices 177189 -- 177688
GGCCGGCGCGCCCTCTCCTATTCCTCTGATTAGAGAAGTGTGCCAGGAATGAAAATTCGTCAACC
CCGCCCCTTCCCCCAGGCACATACCTTGACCGAGCGCAGGGTTTTGAAGAGGTTCAGGGCGGGGG
GTTGGTTTTAAGGGATTGATGAACTTGGGGAAGGGAACCGCTCGTGTGAAGGGAGATGAACTCGG
GGTTGGCTTAGGGTGGCCAACTTTACCACCGGGTCGTTCGATTGACTGGAATGGATTAACTCGCT
TTGCTCGTTGTATCATACCCCTCCCCCCCCCGATGGGATGAGCTGAATTGTATGAACTGGCTTTG
CTCGTTCATGAATCGATGAACTGGCTTTGCTCGTTCCTGCTTTCCTCAGGCCGGCCTATGCTTAG
TGACGCTCATACGCTCAGCTTATCCTCTAAAAAGCCCCTACACCCAGCCCAGCCCGTGGCACTTC
GTGCCCAGTTTAAAGGTTGTTTGAATGAGCTTTAAATCTTTTGGC
Right flanking sequence: Indices 177727 -- 178226
ACAAAAAAAACAGGGGAAGACAACTTGGATCCCGGCTTTGCCAGGGGTTCCAGAGGTGGCAGGAG
GGTTAAAAGTTGGAAGTTCTTTACCGAGCCAGGAGTTGGGGCTGCGAGAACACCCCACCCTTCTG
CCAACGCAGAAGGGTTGGGTTAAAAGTTGGAAGTTCTTTACCGAGCACCGCGAGAACACCCTTCT
GCTTCCCCTGCGGGGGAAAGAGTGGGGCAAAAGGTGTGAACCTTCGCAAGCAACCTTTGCCCAGC
CCAAAAAGAGAGTTCACCTGCACCAACCGCACTCTTTTTTTGAAATCCGTCAAGAACACCACACT
TTGTGTGCAGAGTGCAGAAGAACTAACTCCTGCCACCCTCTTATATTACTCTGAAGGTTGGTTGT
TTGTGGGGAAACCCCTGCGCTCAGAAAGAGACTTCTGCTTTTGGAAATCCTTGGATCCCGACAAC
TGTTTCCATCCGTGCAAGGAGGGCCGTGGGATCCCGACTTTCACG
Found at i:179587 original size:15 final size:15
Alignment explanation
Indices: 179569--179602 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
179559 TGAACTTCTG
179569 CTTCTTCTTCTTCCC
1 CTTCTTCTTCTTCCC
179584 CTTCTTCTTCTTCCC
1 CTTCTTCTTCTTCCC
179599 CTTC
1 CTTC
179603 CCCCCGCGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (15 bp):
CTTCTTCTTCTTCCC
Left flanking sequence: Indices 179069 -- 179568
GGGGAAGAGTTCTTGTTGGCCTTCGTGTTGAATCTTCGCGCAGGGGAATAAGTTCAGGTAGGCAC
GGATAGCTGCCCAGGCCGAAAAGTTTCGCAGGTAGGCACGGGACTTTTCGTTGCCGAAAAGGGTT
GTTGTTTCGCTTACAAAGGTAGGCTGGCACGTGGGAGGTATGTGCAGAAGTTCTCCGAGCGCAGG
GGAAGAGGTATGTGCCTTTACCGAGCGCAGGGGAAGGGCCCACAAACAACCAACCAACCTTCAGA
GTAATATAAGAGAGAGGTTAAGGTATGTGCCTTGACCGAGCGCAGGGGCCTCCGAGGTTAAGGGA
ACGGCACTTTCTTGCGTGCGCTGTTTGTGCCACTGAAATTACTTACAAAGGTATGCGCAGAAGGG
TGTTCTCCGAGCGCAGGGGAAGAGGAACAACCAACAACCTTTTGCCAACAACCCCAACAACCAAC
CTTTTGCCAACCAAACAACCTTCGGGTTGTTTGTGTGAACTTCTG
Right flanking sequence: Indices 179603 -- 180102
CCCCCGCGCAGGGGAATAAGTTCAGGCAGGCACGGGACTTTTCGGCCCAGCCCAAAAAGAGCTAG
CTTTCAAAAAAGGTAGGCACGGATAAAAGGCAGGCAGGCCTTCCCCTCATTGGCAATAACTTGGA
TCCCGAAGGGTTCTTCGTGCCACTATAAAAAAAAGTGGCAATAAAAGCAAGCCAGCCCTGCCGGG
TTCTTCGTGCCACTGCGTGGCCCCCATAGCCCAGAAGGTTGTTTGAATGAGGGCCAATGAGAACT
AACTTTTGTGAGCACGTTTTAAAGTTGGCCTTCCGTGCGGTTGTTTCGAAACAACCGCACGGCAG
AAGTTCACACTTTTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTT
GGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTCCAAGGTGTGAACTACCTTTTTGGGT
TCTCCGTAAAAGTTGCCGTGCCTTTGTCATTTCGAAACAACCGCA
Found at i:179951 original size:5 final size:5
Alignment explanation
Indices: 179941--180031 Score: 182
Period size: 5 Copynumber: 18.2 Consensus size: 5
179931 TTCACACTTT
179941 TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC
1 TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC
179991 TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC T
1 TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC TTGGC T
180032 CCAAGGTGTG
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 86 1.00
ACGTcount: A:0.00, C:0.20, G:0.40, T:0.41
Consensus pattern (5 bp):
TTGGC
Left flanking sequence: Indices 179441 -- 179940
AAGGTATGCGCAGAAGGGTGTTCTCCGAGCGCAGGGGAAGAGGAACAACCAACAACCTTTTGCCA
ACAACCCCAACAACCAACCTTTTGCCAACCAAACAACCTTCGGGTTGTTTGTGTGAACTTCTGCT
TCTTCTTCTTCCCCTTCTTCTTCTTCCCCTTCCCCCCGCGCAGGGGAATAAGTTCAGGCAGGCAC
GGGACTTTTCGGCCCAGCCCAAAAAGAGCTAGCTTTCAAAAAAGGTAGGCACGGATAAAAGGCAG
GCAGGCCTTCCCCTCATTGGCAATAACTTGGATCCCGAAGGGTTCTTCGTGCCACTATAAAAAAA
AGTGGCAATAAAAGCAAGCCAGCCCTGCCGGGTTCTTCGTGCCACTGCGTGGCCCCCATAGCCCA
GAAGGTTGTTTGAATGAGGGCCAATGAGAACTAACTTTTGTGAGCACGTTTTAAAGTTGGCCTTC
CGTGCGGTTGTTTCGAAACAACCGCACGGCAGAAGTTCACACTTT
Right flanking sequence: Indices 180032 -- 180531
CCAAGGTGTGAACTACCTTTTTGGGTTCTCCGTAAAAGTTGCCGTGCCTTTGTCATTTCGAAACA
ACCGCACGGCAGAAGTAAGTTCTTTTTGGTTTGGTTTGGTTCCAAGGAGTGAACTTTTTGGTTCC
AAGGACCAAGAAGGGTTGGGAACTTCTGCTTCGCGCAGGGGAATAAGTTCAGGTGTGAACTTTTT
GGGTTCTTTCCCCCGTGCCAGCCTACCCTTGTAACTTCGAAACCTTTCGTGCAGAAGGGTTGCAA
GTTTCAAGTTGGTTGCAGAGCAGAGCAGAGCAGACAGTTGTTCCAAGGACCAAGAACTTCTGCGG
GTTGTGAACTTCTGCTTCTTCTTCTTCCCCTTCTTCCCGCGCAGGGGAATAAGTTCAGGTGTGCA
GAAGGGTTGCAAAAGGTTGTTGGTTGTTTGAATCTGAGCGCAGCTACCGTGAAGGACCCAAAGAA
TTCTGAGCGCAGCTACGCAGAAGTTCTTGCCACAAGAGTGCCGAG
Found at i:181351 original size:62 final size:64
Alignment explanation
Indices: 181277--181416 Score: 203
Period size: 69 Copynumber: 2.1 Consensus size: 64
181267 GTTGTTTCGC
*
181277 TTACAAAGGTAGGC-G-CCTTCTGCAAACAAAAAGAACTAACTTCTGCACGAAGAGTTTCGAAG
1 TTACAAAGGTAGGCGGACCTTCTGCAAACAAAAAGAACTAACTTCTGCACGAAGAGTTTCGAAA
181339 TTACAAAGGTAGGCGGGGTGAACCTTCTGCAAACAAAAAGAACTAACTTCTGCACGAAGAGTTTC
1 TTACAAAGGTAGGC---G-G-ACCTTCTGCAAACAAAAAGAACTAACTTCTGCACGAAGAGTTTC
181404 GAAA
61 GAAA
*
181408 TGACAAAGG
1 TTACAAAGG
181417 GGCACGGGGT
Statistics
Matches: 69, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
62 14 0.20
67 1 0.01
69 54 0.78
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (64 bp):
TTACAAAGGTAGGCGGACCTTCTGCAAACAAAAAGAACTAACTTCTGCACGAAGAGTTTCGAAA
Left flanking sequence: Indices 180777 -- 181276
CGTGCCTTTGTAAGCGAATGAGTGCCTTCGAACGGATGAGTGAACTACCGCAGGCAGGCAGAAGT
TGCTTGCTTGCTTGCAGAAGTGCCACGAGATGACAAAGGACGGATTTCAAAAAGATCTTCGCGCA
GCTACGCAGAAGTTCTTGCCACAAAGAAGAGTGCTGAGCTTGCTTGCTTTCTGAGCGCAGCGAAG
AACTTTCTTTCTTTTCTTTGGGAAGGCAACTTTCTTTTTGGTTGTTTGGTTGGCCGGATAGAAGC
CGTGCCTTTGTAAAGTGGCACTCATTCGAGATTACAAAGGCACACCTGAAAGAGCGTTAGAACCT
TTCGCTTTGCTGCGCGAAGGATAACTTTTTGGGCCCTTCACCTCTTCCCCTGCGCTCAGATTCAA
ACAACCAACAACCAACCTTTTGCAACCCTTCTGCACACCTTGGATCGGATCCAAAAAGCAACGCA
GAAGGGTTCAACTTGCAACCCTTCTGCACGTGCGGGTTGTTTCGC
Right flanking sequence: Indices 181417 -- 181916
GGCACGGGGTTTAGAAAGAACCTTCTGCAAGCAAGCAACTTCTGCCTGCGGACCTTACCTTCTGC
ACACCTTGGAACCAAAAAGGCTCTGCAACCAACTTGAAACTTGCAACCCTTCTGCACGAAGAGTT
TCGAAATGACAAAGGTAGGCGGATAGCAACCTTTTCCCCTGGCACTACCGAACTTTTGGGCTGGG
CCAAAAGTTCGTTAGTTTTCAAACAACCAACCTTCTGCACGAAAAGGCAGGTAGGCACGGATTAA
ACGTGTTTAGGCACGAAGGAGGGAGAGTGGGACAACTTGGATCCCAACGTATTTGCCAGGCCACT
TTGCCGAAGAATGAGGGAAGGAGTTCCGAGTGGTTCCTTAACGGTAGCTGCGCTCAGAACTATTT
TTTGCAGGCAGGAAATCCGCAGAAGGTGTGAACTTCTGCGTAGCTGCGCGAAGCAGAAGTTACCA
ACCCCCCCCGCATAAGTTGGCAGAAGGTTTGTTTGTGTGAACTTC
Found at i:182313 original size:4 final size:4
Alignment explanation
Indices: 182306--182361 Score: 112
Period size: 4 Copynumber: 14.0 Consensus size: 4
182296 AAAAAAAGTG
182306 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
182354 GCAA GCAA
1 GCAA GCAA
182362 AAAGTTCCCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 52 1.00
ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00
Consensus pattern (4 bp):
GCAA
Left flanking sequence: Indices 181806 -- 182305
TTTTGCAGGCAGGAAATCCGCAGAAGGTGTGAACTTCTGCGTAGCTGCGCGAAGCAGAAGTTACC
AACCCCCCCCGCATAAGTTGGCAGAAGGTTTGTTTGTGTGAACTTCTGCGTAGCTGCGCGAAGAT
TCAACCTTTTGGCAGAAGTTCGCAGACCCCGCTGCGCGAATAACTTCTGCCGGTCCTTGGATCCC
GCCACACTTTTATCACGTTCACAAAGGATTTCCAAAAGCGTTTGCTTTCTGAGCGCAGCTTTCCC
CGGAACAGCAAACTTTGTAGGCACGGATCCCCTTGGCAATCCGTGCCTACCTTATCCGTGGCCCG
GTAAGTCTCATTGGCACTCAGAGCTTGCTTTTGGCCAAAAGAAAGTTCGTTAGTTTTCAAACAAC
CAACCTTCTGCACGTGCGGGTTGTTTCGCTTACAAAGGCAGGCACGGATGAGACTTTTGCACTCA
TACCCGGCAAGCCCTGGCACGGTAGTGCCACTATAAAAAAAAGTG
Right flanking sequence: Indices 182362 -- 182861
AAAGTTCCCCTGGCTGCCGTCCCACAGTAGTGCGTTTCATCCGAATGAGTGCGCAGGGGCTTCCC
CCAGGTTGTTTGTTGCTATCCGTGCCGTGCCTTTGTCATCTCGTGGCACACCCCTTCTGCAAGCA
AACTTCTGCACGAAAAGGTTGGTTGTTTCGAAATGACAAAGGACTTAAAAGGTTGTTGCTATCCG
TGCCTACCTGACTCATTCGGAGAAAAGCCACAGTCTTCGAAACAACCTTTTCGTGCGTGCAGGGG
AAAAGGTTGTTTGTTTGCCTTCGAAACAACCAACCGCCCAAAAAGTGACAAAGGTAGGCTGGCAC
GGGGGCCCTTCCCCACGGCCACTTCGAATTCGGGCCAAACTTTTCGGCCACTTTAATTACTTACA
AAGGTAGGCACGGGGGAAAAACAACAACCAACCCTTTTGCCACAAACTTCGTGCCACTTCGGCAA
GTGGCCTGGCAAAGTAGGGATCCAAGGTGTCCCACTCTTTCCCCC
Found at i:186971 original size:5 final size:5
Alignment explanation
Indices: 186961--186990 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
186951 AGCGCAGCTT
186961 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
186991 CGTGCGGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 186461 -- 186960
TTGTTTGTTGCTTGCTTGCAGAAGGTTCTTTCCCCTCCCCTCCCCCGTGCCGTGCCAGGTTGTTT
CGAAACAACCGGTTGTTCGGCACGGCAGAAGTTCACACTTTTTGGTTCCGTTCCTTGGCTAGAAA
GGTGTGAACAAAAAAAAAAAGAGTTCTGAGCGCAGGGGAATAAGTTCAGGTGTGAACTTTTTGGT
TCCAAGGTGTGCCACGAGATGACAAAGGACGGATTTCAAAAAGATCTTCGCGCAGCGAAGCAGAA
GCCACAAAAAGAAAGAAAGAAAGTTAAAGAAAGCGAAAGAGAGTGCCAAAAGGCGCAGCGAAGAA
AGTTATTTCGGGAGGGAAGGCAACGGCACTGGGTGGTTGGCCGGAAACAACCTTTTGCAAGCCAC
AGTCTTCGAATGAGTGCCTTTGATCCGTGCCGTGCCTTTGTAACTTCGAAACTCTTCGGCCACCC
CAAAGGTTTAAACCAAAAGCAGAAGTCTCTTTCTGAGCGCAGCTT
Right flanking sequence: Indices 186991 -- 187490
CGTGCGGGGGAAGAAGGAGAACCGGTTTGACGGATTTCCAAAAGCAGAAGCAGAAGTTTTCGCAG
CGGTGAAGGGGAAGCAAAAGTTGCTTGCTTGCGGGTTCACGGCAACTTTTACGGGGGCCTTCTGC
AAGCAAGCAACAAACAACCGGTTCACGCCCGGAGAACCCCTGCAAGCAAGCAAGCAAGCAAGCAA
GCAAGCAAGCAAGCAAGAAGTTTGTCGCTTACAAAGAAACCAAAAGAGCTTGCTTTCTGAGCGCA
GCTTTCCCCCTTGCGGGAACAGGTAGGCACGGGGGAAAGAACCCAACTTCTGCCGTGCCGTGCCC
CTTCCTTTAAGGTTGTTTCGAAGTTACAAAGGGTTTGCCGGCAGAAGTTATTCGCGCAGCTACGC
AGAATAAACTTCTGCTGCCTGCGGGTTGGCGGCAAGAAGGGTTGGGTTGTTCTGAGCGCAGCGAA
GTGAAGGCACGGCACGGATCAAAGGACGGATTTCCTACAAAAAAA
Found at i:187171 original size:4 final size:4
Alignment explanation
Indices: 187162--187202 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
187152 GAGAACCCCT
187162 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA G
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA G
187203 AAGTTTGTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.49, C:0.24, G:0.27, T:0.00
Consensus pattern (4 bp):
GCAA
Left flanking sequence: Indices 186662 -- 187161
GTGTGCCACGAGATGACAAAGGACGGATTTCAAAAAGATCTTCGCGCAGCGAAGCAGAAGCCACA
AAAAGAAAGAAAGAAAGTTAAAGAAAGCGAAAGAGAGTGCCAAAAGGCGCAGCGAAGAAAGTTAT
TTCGGGAGGGAAGGCAACGGCACTGGGTGGTTGGCCGGAAACAACCTTTTGCAAGCCACAGTCTT
CGAATGAGTGCCTTTGATCCGTGCCGTGCCTTTGTAACTTCGAAACTCTTCGGCCACCCCAAAGG
TTTAAACCAAAAGCAGAAGTCTCTTTCTGAGCGCAGCTTTCCCCTCCCCTCCCCTCCCCTCCCCT
CCCCCGTGCGGGGGAAGAAGGAGAACCGGTTTGACGGATTTCCAAAAGCAGAAGCAGAAGTTTTC
GCAGCGGTGAAGGGGAAGCAAAAGTTGCTTGCTTGCGGGTTCACGGCAACTTTTACGGGGGCCTT
CTGCAAGCAAGCAACAAACAACCGGTTCACGCCCGGAGAACCCCT
Right flanking sequence: Indices 187203 -- 187702
AAGTTTGTCGCTTACAAAGAAACCAAAAGAGCTTGCTTTCTGAGCGCAGCTTTCCCCCTTGCGGG
AACAGGTAGGCACGGGGGAAAGAACCCAACTTCTGCCGTGCCGTGCCCCTTCCTTTAAGGTTGTT
TCGAAGTTACAAAGGGTTTGCCGGCAGAAGTTATTCGCGCAGCTACGCAGAATAAACTTCTGCTG
CCTGCGGGTTGGCGGCAAGAAGGGTTGGGTTGTTCTGAGCGCAGCGAAGTGAAGGCACGGCACGG
ATCAAAGGACGGATTTCCTACAAAAAAAAAGTGCCTGCCAGTTCCCGCTTGCTTGCTTTCTGAGC
GCAGCGAAGCAGAAGCCACAAAAAGAAAGAAAGAAAGAAAGTGCAGTGCCACTTTTTGCTTGCTT
TCTGAGCGCAGCGGGGAGGGGAGGGGAGAAGCAAGAAAGATCCAAAAGTTCCTCGGAGAACCCCT
GCGCTCGGCCCTTCTGCACATACCTTTTTTTTGGACCAGAAAGGT
Found at i:188917 original size:14 final size:14
Alignment explanation
Indices: 188898--188924 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
188888 TGGCAAGCAA
188898 GAATGAGTGCCTTC
1 GAATGAGTGCCTTC
188912 GAATGAGTGCCTT
1 GAATGAGTGCCTT
188925 TTATCCGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (14 bp):
GAATGAGTGCCTTC
Left flanking sequence: Indices 188398 -- 188897
TTTAGGGTTTCCCTCCCTCTATATACGTGATTTACCTGGGTTAGCGTATTGGTCAATCACGGCTT
TATATAGAGTGTCGGGACACTCGTAAGACCGAGGGGGCTTTTATAAGAGGTCCCCTCCCTTTCCA
CTCTCTCCCGCCGAACATTGACTTTATTTTTGGCGAGAGGGTGGGGAGGGGGAAGTTAGTTCTTT
TGGATCCAAGGACGGGACTTGACGGGAGAGACACTCTCACGACTTAGTTTGACCCGGGCTCCCGG
CAAAGCTATGAGTGCCAATGAGGGAAGGAGGGAGAGTGGTTCCTTGGATCCCGACTTGCCACACA
AGGTAGGCACGGATTTAAAAAGGGGTGCAAACTGTTGTTAATTCGTGCCCAGGGGAAAAGGTTGT
TTGTTGCTATGAGTGCCAATGAGTTTGTTTGGCCCAAAAAGTTCGAAGGTAGGCACGGATTGCCA
AGGGTGCCTACCTTTGTAATAATTCGGTCCACTTCTGGCAAGCAA
Right flanking sequence: Indices 188925 -- 189424
TTATCCGTGCCTACCTTTGGGGGCCCAAGAAGTGGCACTCATTCGTAGTGGCACGAAGTGGCACG
AATAGCCCCTGCGCACTCATTCGCTTACAAAGGTAGGCACGGATTTAAAGGTGTGAACAAAAAAA
GAGTGCAACGGGGGTTGCAAAAGGTTCAGTTGGTTGCAGAAGGGTGTTCTTTACCGAGCGCAGGG
GTAACTTTTCCCCACAAACAACCAACCTGAAGAGGGATATAAGAGAGAGCAGAAGTTCACACAAA
CTTCTTGGGTTGCGTGTTGGTTTCTCCAAGCAGGTGAACGGCTGGGCAAAAGTTGCTTGCGAAGG
TTCCCACTTAACTCTCAGTCCCACTCTCCCTCCTACGTAGCTTTATTTCAACGTCACGTTGGTCA
GAGCAGAGCACGGAGTCAGAGGGGCCCACTCCGACACACACCCGAGGAGGAAGGACGGACACCGG
GCGAAGCCACCTCGCCACCGTTTGCCCTACACAAGGGAAGGGAAG
Found at i:189472 original size:5 final size:5
Alignment explanation
Indices: 189412--189459 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
189402 TGCCCTACAC
189412 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAG
1 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAG
189460 TTCCAGGGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (5 bp):
AAGGG
Left flanking sequence: Indices 188912 -- 189411
GAATGAGTGCCTTTTATCCGTGCCTACCTTTGGGGGCCCAAGAAGTGGCACTCATTCGTAGTGGC
ACGAAGTGGCACGAATAGCCCCTGCGCACTCATTCGCTTACAAAGGTAGGCACGGATTTAAAGGT
GTGAACAAAAAAAGAGTGCAACGGGGGTTGCAAAAGGTTCAGTTGGTTGCAGAAGGGTGTTCTTT
ACCGAGCGCAGGGGTAACTTTTCCCCACAAACAACCAACCTGAAGAGGGATATAAGAGAGAGCAG
AAGTTCACACAAACTTCTTGGGTTGCGTGTTGGTTTCTCCAAGCAGGTGAACGGCTGGGCAAAAG
TTGCTTGCGAAGGTTCCCACTTAACTCTCAGTCCCACTCTCCCTCCTACGTAGCTTTATTTCAAC
GTCACGTTGGTCAGAGCAGAGCACGGAGTCAGAGGGGCCCACTCCGACACACACCCGAGGAGGAA
GGACGGACACCGGGCGAAGCCACCTCGCCACCGTTTGCCCTACAC
Right flanking sequence: Indices 189460 -- 189959
TTCCAGGGAAGGGCGGGAAGAGCTGTTCCGGAACGAGCTGTAATGAACGGGTCTGAGGTGTTGCG
CGTAGCGCCTCCCGCATCCATAGACCTTTTTAAAGTATTTTCCGGTTTAGGTTTCCTGTGTGCCG
ATGGGCGAGATCCCTCGACCCCGGACGCGTCGCGCCGGCTACGCCCGCCCTTCGCCTCGCTGCGC
TCAGTAATCTTTTTCGGATTTCCTTTCATCAGCAATTAATCTCATCCTTGCAAGCTGCTAACTGC
GCGTGCCTCGGCCACGAGGACAGGTAAGCCGGCCAGGGCAAGCCAGCCATATAGGCTTGGCCGGT
CGACCTTAAAAGTAGTTGTTCGGTTATCTAGAAACTGCGAGGCAAGCGCCACGTGGATGAGCAAG
CATGAGGAATGGCGAACCTTCGAATCCCCAAAAGTTCAGTTCAGAGGTGGAGCATTGAAAAGGGG
CGGCTTTCCCGGGCTTGCTTGAGGGCCAAGCATTAGCGATCTTGA
Found at i:190784 original size:16 final size:16
Alignment explanation
Indices: 190763--190799 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
190753 GAAACTTTTC
190763 GGCCACGAAGAATGAG
1 GGCCACGAAGAATGAG
190779 GGCCACGAAGAATGAG
1 GGCCACGAAGAATGAG
190795 GGCCA
1 GGCCA
190800 ATGAGCTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.22, G:0.38, T:0.05
Consensus pattern (16 bp):
GGCCACGAAGAATGAG
Left flanking sequence: Indices 190263 -- 190762
TCTATACTGATTTTCCAACCAACTCTTTACTACCCATCATCAAACTCTTGACATTCCTCCCGCAC
AGGCATCTGTAGAGGATAACATAGCTGCTACGGCCGGGACAGTCGTCTCTCGATCTCAAAGAAAG
AATAACCCGTAAGCAAGCAACATGAGTTAGAGTAACGTTAGCTGCAGGTCGCTCTAGTCTTCGGC
CCACAAAGGCACATACCTTGACCGAGCGCAGGGGTTCTCCGAGGAACTTCTTGGGATCAACGGGT
CACCAAACCGGCCCGGCAACCTAGGATCGGGTTCGACAGCCGGACAGGAGTGGCTATCCAAATCT
CTAAGTGTGATCCCCGACCCCGAAACAACCTTTTCGGCCAGCCCACCTTTTAGGACAGATCTCAT
CTCTGTTGCCGGTTTCGCAGCGGGGAAAAGAAGTTCTTGCCACTCTAAAAGTATTAGCAGGAGTT
TTCGCAGCGAAGCAGAAGTTCTTGCACGGATGTGGGAAACTTTTC
Right flanking sequence: Indices 190800 -- 191299
ATGAGCTTGTTGGCCACCTTTTAGGTTAGGTGTGAACAAAAAAAGAGTGCGGGTTGTAAAAAGCA
AGTTCTTCTGCTTCTTGCAGCGGGGCTTGCTTTAAAGTTCTTTTCCGCAGAAGGGTGTTCTCGCA
GGTGAAGCCCTGCGCTCGGTCAAGAACTTCTGCAACCCTTTTTTTTGGACCTCCAAAAAGAAAGC
AGAAGTTTCTTCTGAGCGCAACGGCAGAGGTAGCAGGCATGTGCAGAAGTTCTCCGAGCGCAGGG
CTTCACCTGCGAGAACACCCTTCTGCGGGGGGCCGGGTCCCCTCCCCTCCCCCGGGACGAGCTTT
TTGCTGGCTGCAAAAAGTGTGAACTTCTGCTTGCTTTTTTTTGGACCTCCAAAAAGAAAGCAGAA
GTTCTTCTCTTCGCGCAGCGGAGCGAAGGAAATCCGTCCTACCTTTGTGAACGTGATAAAAGTGT
GGCAAGTCGGGATCCAAGGACCAAGAAGGTGTGCAGCGGGAACAA
Found at i:192488 original size:5 final size:5
Alignment explanation
Indices: 192475--192508 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
192465 GAAGTTCCTC
*
192475 GGAGA GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
1 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
192509 AACCCCTGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.24, C:0.00, G:0.76, T:0.00
Consensus pattern (5 bp):
GGAGG
Left flanking sequence: Indices 191975 -- 192474
TCGAGCTCTTTTTTTTGCCGCCCCGGTTCTATTATGACCAATAATTGTACATAAATATTACTTAA
ATTATCATTATCAATAATTGTATGCGGAATAAGTCAAATAAATTGCACTGATAAGATCGTATATG
GTAATGGCTACAAACTGTCCCCCGGGGGAACCGGCGCGCTTAATCTACTACTCATTGAAACTTAC
TTTCTCGTGCCCGAGATCGGAAGATCAAAGGAGCAAGCAACTGGGATATCTCGGGACCCCAGTTA
TCCATCGGTAGTGTATGGGCAACTCCTGCTAATACTTTTAGAGTGGCAAGAACTTCTTTTCCCCG
CTGCGAAACCGGCAACAGAGATGAGATCTGTCCTAAAAGGTGGGCTGGCCGAAAAGGTTGTTTCG
GGGTCGGGGATCACACTTAGAGATTTGGATAGCCACTCCTGTCCGGCTGTCGAACCCGATCCTAG
GTTGCCGGGCCGGTTTGGTGACCCGTTGATCCCAAGAAGTTCCTC
Right flanking sequence: Indices 192509 -- 193008
AACCCCTGCGCTCAGAAAGCGCTTTTGTTCACACCTTTGGGGTGGGGTGGCGTTTCGCTTACAAA
GGTGTGCAGAAGGTTGTTTGAATCTGAGCGCAGCTACCGAACTTTGCACGGCAACGGGGCCCCTT
CTGCAAGCAACAAACTTCTGCACACCTGAACTTATTCCCCTGCGCTCAGATTCAACACGAAGGTT
TGCCAACTTTTAAGCAGGCATAAGTCCTACGCGAAGAACCAGCCAACCAACCGGTCCGGTCAACC
CTTCTTGGCCCTTGGAACCAAAAAGCTCTGCTCTGCAACAAACAAACTTCTGCCGTGCCCCTTTA
ATTGTTTCGAAACTTACAAAGGTAGGCACGGAAACCAACCTTCTGGCACTCCTTGGATAAGGGAT
CCGGTTGTCTTCCCCCCCCTTCTATTCCTCTGAGGAGGCGGGTCCTTGGATTCCCTTGATTTGGA
TCCCACCCGTACCGGGTCCCTTGGATCCCACCCGTGCCGGGGGAA
Found at i:192993 original size:25 final size:24
Alignment explanation
Indices: 192959--193048 Score: 92
Period size: 25 Copynumber: 3.5 Consensus size: 24
192949 TTCCCTTGAT
192959 TTGGATCCCACCCGTACCGGGTCCC
1 TTGGATCCCACCCGTACCGGGT-CC
*
192984 TTGGATCCCACCCGTGCCGGGGGAAGTCC
1 TTGGATCCCACCCGTACC---GG--GTCC
*
193013 TTGGATCCCACCC-TAACGGGTGCC
1 TTGGATCCCACCCGTACCGGGT-CC
193037 TTGGATCCCACC
1 TTGGATCCCACC
193049 TTATCCAAGG
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
23 2 0.04
24 14 0.25
25 19 0.34
28 4 0.07
29 15 0.27
30 2 0.04
ACGTcount: A:0.14, C:0.39, G:0.27, T:0.20
Consensus pattern (24 bp):
TTGGATCCCACCCGTACCGGGTCC
Left flanking sequence: Indices 192459 -- 192958
TCCCAAGAAGTTCCTCGGAGAGGAGGGGAGGGGAGGGGAGGGGAGGGGAGAACCCCTGCGCTCAG
AAAGCGCTTTTGTTCACACCTTTGGGGTGGGGTGGCGTTTCGCTTACAAAGGTGTGCAGAAGGTT
GTTTGAATCTGAGCGCAGCTACCGAACTTTGCACGGCAACGGGGCCCCTTCTGCAAGCAACAAAC
TTCTGCACACCTGAACTTATTCCCCTGCGCTCAGATTCAACACGAAGGTTTGCCAACTTTTAAGC
AGGCATAAGTCCTACGCGAAGAACCAGCCAACCAACCGGTCCGGTCAACCCTTCTTGGCCCTTGG
AACCAAAAAGCTCTGCTCTGCAACAAACAAACTTCTGCCGTGCCCCTTTAATTGTTTCGAAACTT
ACAAAGGTAGGCACGGAAACCAACCTTCTGGCACTCCTTGGATAAGGGATCCGGTTGTCTTCCCC
CCCCTTCTATTCCTCTGAGGAGGCGGGTCCTTGGATTCCCTTGAT
Right flanking sequence: Indices 193049 -- 193548
TTATCCAAGGAGTGCCACGAAGGATGAGGGCCACTTTAAGAAAGAAGTGGCCCGAATTAGCAACT
TTAAAGAGTTTGCACGAATTTAAGTTGCCGGCACTCCCTTCGCTTCGCTGCGCTCAGATTGCACG
GTAGGTAGGACGGATTTCCAAAAAGAGCTTGCTTTTCCCCGCTGCGCGAAGCTCTTCCCAACCTA
CAACCCTTTCTGGTCCAAAAAAAAGAGACTTCTGCTTTTTTTTTGCTGCCCTGCCAGCTTTTTCG
TCCCGCAGAAGTTCTCTTCCCCTGCGCTTGGAGAACTTCTGCACATGCCTGCTACCTCTGGAACC
CGCTGCGCGAAGCAGAAGTCTCTTCTGCACACTTTAAACACTTCGCTACGCGAAGCAGAAGTTCA
CACCTTAAAACTTGGTCCTTTTGGAGTGGAATACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGT
TGGTTGAAACACACTTCTGTTCTGGTTTCTGCGCGAAGCAGAAGC
Found at i:193934 original size:58 final size:58
Alignment explanation
Indices: 193844--193985 Score: 275
Period size: 58 Copynumber: 2.4 Consensus size: 58
193834 CAACCTCGCG
193844 GTGCTCGGTCAAGAACTTCCAACCTTTTCCCCTGCGTTGGCAGAAGTTCTCTTCCCCT
1 GTGCTCGGTCAAGAACTTCCAACCTTTTCCCCTGCGTTGGCAGAAGTTCTCTTCCCCT
193902 GTGCTCGGTCAAGAACTTCCAACCTTTTCCCCTGCGTTGGCAGAAGTTCTCTTCCCCT
1 GTGCTCGGTCAAGAACTTCCAACCTTTTCCCCTGCGTTGGCAGAAGTTCTCTTCCCCT
*
193960 GCGCTCGGTCAAGAACTTCCAACCTT
1 GTGCTCGGTCAAGAACTTCCAACCTT
193986 CTGCAACCCT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.17, C:0.35, G:0.19, T:0.30
Consensus pattern (58 bp):
GTGCTCGGTCAAGAACTTCCAACCTTTTCCCCTGCGTTGGCAGAAGTTCTCTTCCCCT
Left flanking sequence: Indices 193344 -- 193843
CTTCTGCACATGCCTGCTACCTCTGGAACCCGCTGCGCGAAGCAGAAGTCTCTTCTGCACACTTT
AAACACTTCGCTACGCGAAGCAGAAGTTCACACCTTAAAACTTGGTCCTTTTGGAGTGGAATACT
TGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGGTTGAAACACACTTCTGTTCTGGTTTCTGCGCG
AAGCAGAAGCCTCTTCTGCACACTTTAAACACTTCTTCCCCTGCGCGAAGATTCAACCGCCCTTC
TTGGCAGAAGGTTGTTTGAAAGCAGAAGTTCTTTTCCTTCCCCCGCTGCGCGAAGATTCAACCTT
CTTGATCCTTTTGGAGTGGAATACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGGCGCATTACCC
GAGGTCTTCCCCAAAAAAAAGCAGAAGTTTCTTGGAACCAAGAAAGTTTGTGCGCAGAAGGTTGC
TTCGCGCAGCGGGGGAAGGAAAAGCTCTTCTCCCTCAACCTCGCG
Right flanking sequence: Indices 193986 -- 194485
CTGCAACCCTTTTTTTTTGGAGATCCGGTTGCAGAAGTTTATTCTGAGCGCAGCGAAGCGAAGGC
ACGGGGGCCCTTCCCCACGGCCACAATTATTTTGATAAAAAAAAGTGGCTTGCGTTTGGTTGTTT
CGGAGAACCCGCGCAAAGTCGGGATCCAAGTTGTCCCACTCGTAGCAGGGTAAAATAACTTCTGC
TCTCTCTTATATCCCTCTGAAGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCTCGGTCAAGAACTT
CCAAACTCCTGCCACCTCTGGAACCGCACGAATGAACCTGGCAAATACAGTTGTCGGGATCCAAG
GACCCACTCTCCCTCCTACTCATTCAAACGCAGCGGGGGTTGCCGAACAACACGCAACCCAAAAG
GTTGCGGTTGCCTTTGCCTTGCCAGGTTGTTTCGCTTACAAAGGTAGGCACGGAGAACAACCTTG
TTTAACCCTTGCCTCCCTTCCAGAGGAATATAAGAGGGAAGACAC
Found at i:193962 original size:25 final size:25
Alignment explanation
Indices: 193870--193962 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 25
193860 TTCCAACCTT
193870 TTCCCCTGCGTTGGCAGAAGTTCTC
1 TTCCCCTGCGTTGGCAGAAGTTCTC
* * * *
193895 TTCCCCTGTGCTCGGTCAAGAACTTCCAACCTT
1 TTCCCCTGCG-TTGG-C-AGAAGTT-----CTC
193928 TTCCCCTGCGTTGGCAGAAGTTCTC
1 TTCCCCTGCGTTGGCAGAAGTTCTC
193953 TTCCCCTGCG
1 TTCCCCTGCG
193963 CTCGGTCAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
25 21 0.40
26 3 0.06
27 1 0.02
28 6 0.12
30 6 0.12
31 1 0.02
32 3 0.06
33 11 0.21
ACGTcount: A:0.13, C:0.35, G:0.20, T:0.31
Consensus pattern (25 bp):
TTCCCCTGCGTTGGCAGAAGTTCTC
Left flanking sequence: Indices 193370 -- 193869
AACCCGCTGCGCGAAGCAGAAGTCTCTTCTGCACACTTTAAACACTTCGCTACGCGAAGCAGAAG
TTCACACCTTAAAACTTGGTCCTTTTGGAGTGGAATACTTGCTTGCTTTCTTTAAAGTGTGCAGA
AGGTTGGTTGAAACACACTTCTGTTCTGGTTTCTGCGCGAAGCAGAAGCCTCTTCTGCACACTTT
AAACACTTCTTCCCCTGCGCGAAGATTCAACCGCCCTTCTTGGCAGAAGGTTGTTTGAAAGCAGA
AGTTCTTTTCCTTCCCCCGCTGCGCGAAGATTCAACCTTCTTGATCCTTTTGGAGTGGAATACTT
GCTTGCTTTCTTTAAAGTGTGCAGAAGGGCGCATTACCCGAGGTCTTCCCCAAAAAAAAGCAGAA
GTTTCTTGGAACCAAGAAAGTTTGTGCGCAGAAGGTTGCTTCGCGCAGCGGGGGAAGGAAAAGCT
CTTCTCCCTCAACCTCGCGGTGCTCGGTCAAGAACTTCCAACCTT
Right flanking sequence: Indices 193963 -- 194462
CTCGGTCAAGAACTTCCAACCTTCTGCAACCCTTTTTTTTTGGAGATCCGGTTGCAGAAGTTTAT
TCTGAGCGCAGCGAAGCGAAGGCACGGGGGCCCTTCCCCACGGCCACAATTATTTTGATAAAAAA
AAGTGGCTTGCGTTTGGTTGTTTCGGAGAACCCGCGCAAAGTCGGGATCCAAGTTGTCCCACTCG
TAGCAGGGTAAAATAACTTCTGCTCTCTCTTATATCCCTCTGAAGGTTGGTTGTTTGTGGGCCTT
CCCCTGCGCTCGGTCAAGAACTTCCAAACTCCTGCCACCTCTGGAACCGCACGAATGAACCTGGC
AAATACAGTTGTCGGGATCCAAGGACCCACTCTCCCTCCTACTCATTCAAACGCAGCGGGGGTTG
CCGAACAACACGCAACCCAAAAGGTTGCGGTTGCCTTTGCCTTGCCAGGTTGTTTCGCTTACAAA
GGTAGGCACGGAGAACAACCTTGTTTAACCCTTGCCTCCCTTCCA
Found at i:198650 original size:5 final size:5
Alignment explanation
Indices: 198640--198731 Score: 184
Period size: 5 Copynumber: 18.4 Consensus size: 5
198630 AAAGGGTTAT
198640 CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG
1 CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG
198690 CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CC
1 CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CCGTG CC
198732 TACAAAGTTC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 87 1.00
ACGTcount: A:0.00, C:0.41, G:0.39, T:0.20
Consensus pattern (5 bp):
CCGTG
Left flanking sequence: Indices 198140 -- 198639
CCACTCTCCCCCCTTCCCTCATTCTTCGAATGAGTGCCGCTGTTTCCTTTAACCTCGTGCCTACC
TTTGTAAGTAATTTCAGTGGCATCTATCGGAGTGGCACGGATTTAAGTTGCCGGCCTTCCCCAGT
GGCACGAATGAAAGCAGAACTGGCCCTCATTCTACGACAACTTCTAAGCGCGCCGGTTGTTTGAA
TGAGGGCCTTAAACAGTTGTGCCGGAGGTATGTGCCTTGACCGAGCGCAGGGGAAGAGGTGGCAG
GTATGTGCAGAAGGGTGTAAGTTCTCCGAGCCCCGCGAGAACTTATGCGGAGAGTGGGACACGAT
AACGACGTTTTGCTTTCATTCGTGCCAAAAGGAAAGGGTTATTCGTGCCCAGGGGGTGAACCGGT
TGTTTGTTGCTATTCGGGCCTCGTGCAAACTGTTAATTCGGTCCACTTCGAATGAGGGCCGGCCC
TCATTCCCTCATTCTTCGTGGCACTCATTCGTGCCAAAGGGTTAT
Right flanking sequence: Indices 198732 -- 199231
TACAAAGTTCTTCGCTGCGCTCAGTAGAGGTTTCTTTGTAAGTAATTTCAGTGGCACAAACAACT
TATTCCCTCAGTTTTCGAAACAACCTTAAAGGTTGTTCGGCAGAAGGTTGAAAGTTGGGTTATCC
GTGCCACAGTGGGAATAAGTTTGTTTGTGCCACTGAAATTACTTACAAAGGGTTTGCCGGCAGAA
GTTTGGTTGGAACTTCTGCTTCGCGCAGCGAAGAACTTCTGCGAACTTCTGCGGGTTGGCGGCAA
GAAGGTAACTTCTGCTTCGCGCAGCTACGCAGAAGTTCACACAAACCTTCTGGGCCGGGCCGGCA
GAAGGTAACTTCTGCTTCGCGCAGCGGAGTGAAGGTAGGCTTTTTGCTCCGAAACAACCCAACCA
GAACTCTCTGGTTGAGAGTTCGGCGAGCTAAAAAAGTTACAAAGGTAGGCTTGCACGGATAGCAA
CTTTTTTTTAAGTCCTTTGTGATTTCGAATGAGTGCAGAAGGTCC
Found at i:200911 original size:5 final size:5
Alignment explanation
Indices: 200901--200943 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
200891 TGGGGGAAGG
200901 CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCC
1 CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCC
200944 CAAAGGCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (5 bp):
CCCTT
Left flanking sequence: Indices 200401 -- 200900
ACAGGACGCTGCCGCATAGAGTTTGTTTTTTAGTTTATAAAATAAGACTTTTAAGGTATGTGCAG
AGGGGTGTTCTCCGAGCGCAGGGGGAGGTGGCAGGAGTTCTTGACCGAGCGCAGGGTAACTTATT
CCCCACAAACTTCAGAGGGATATAAGAGGGAGGTGGCAGGGGAAGGGAACAACTTTTTGTTTGGA
GGCGGGAGTCCGGCCGTTGCGCCGGGTTAAACCAAAACGTGCAAGAGGGCTTGTTGCAACGGGGA
GGGGAGAGTGGGACAACTTGGATCCCTACTTTTAAACGTGCGTGCAAAACAACTTAAAAAAAAAA
GGATTTTAAGTTGGCTTTTGCAAAGTCGGGCAAAAGAAAGCAGTTGTGGGACACGATAAACCGGT
TCTTCGAAACAACCAGTGCCGTTGAAAGTTAGTTCGGCCGGGCCGGCAGAGGGTTGTTTGTTTGC
AGAAGGTTCCAATCCAAGTTGTGCCACTTCTTGCTTGGGGGAAGG
Right flanking sequence: Indices 200944 -- 201443
CAAAGGCTTTTATTTTATTTTTTTATTCTATTTTAAAGTGGCCGAAAAGTTTGTTTCGCAGGTAG
GCACGGATTTCGCCGCTTTCTTTAAAGTTGCCGGCACTCATTCGAAGAACCAACCCTTCACTTCT
TCCCCTGCGCGAAGATTCTTTTGGAAGTCCTTTTGTAAAAGTTGGGATCCAAGTTGTCCCACTCT
CCCTTAACCTCTTCCCCTGCGCTCGGTCAAGGTATTACTTCCTACAAACTTTTTTGCACGAATGT
GGGTCTGAGTTTGGCTTGCGCAGAAGTTATGAGTGCCAATGAAAGTAAGTAAGTTTAAAGCTGTT
TTAAAGCGGTGCGGGGGTGCGGTTTGGCCACAAACTTTAACACGCTTACAAAGGTAGACTGGCAC
GGATTTAAAGGAGATCCGTGCCTACCTTTGTAAGCGAATGAGGGCAACCGGGACTGAAATTACTT
ACAAAGGACGGGACCTTTGCTTCGCGCAGCTTTCCCCCGTGCCGT
Found at i:207339 original size:5 final size:5
Alignment explanation
Indices: 207329--207353 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
207319 AGCGCAGCTT
207329 TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC
207354 CGTGCGGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 206829 -- 207328
CTCTCCCTTCCCCTGCCACCTCCCTCTTATATCCCTCTTCAGGTTGTTTGTGGGGAATTAAGTTA
CCCTGCGCTCGGTCAATAACTCCTGCAACCTCCCCCTGCGCTCGGAGAACACCCTTCTGCACATA
CCTTGACTTGGATACCGTAGTTGCGGGCTTTCATTCGTGCTAACCCAGAAGGCCGTTTGAATGAG
GGCCAATGAGGGGAAGGGAAGGCCTGCCTGCCTTTTATCCGTGCCTACCTTTGTAACTTCGAAAC
TCTTTGGCAGAAGGGTTGTTGAAAGTTGGATCCAAGGGCCAAGAAGGGGGGCCGGTTGGTTGGCT
GGTTCTTCGCGTAGCAGAAGAGACTTATGCTGCCTGCGGTTGGCAGGCAGTTGGGGAAGACCGGT
TGTTTGGTTGGTTCTTCGCGCAGGGGGGAAGAGTTCTTGTTGGCCTTCGTGTTGAATCTGAGCGC
AGCGAAGAACCTTCTGGAACAAAAAGCGCTTTCTGAGCGCAGCTT
Right flanking sequence: Indices 207354 -- 207853
CGTGCGGGGGAAGAAGGAGAACCGGTTTGACGGATCTCAACACGCACGCACGCTTTAAGTGCCAA
AAGATGCATGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCGGTGAAGGGGAAGCAAAAGTTGC
TTGCGTGCGGGTTCTAACTAACAACCTTTTCGGCCACGAAATGACAAAGGACGGATTTAAAAAAA
AAGAGTGCGTGGTTTCGCAGGTGAACTTTTATTGCGGGACTTCTGCCAACGCAGGGGAAAAGGTT
GGAAGTTCTTGACCGAGCGCAGGGTAACTTAATTCCCCACAAACAACCTGAAGAGGGATATAAGA
GGGAGGTGGCAGGGGACGGCCGGGAACTCTTTGCAGCCAGCAAAAAGGGAAGGGCCCGGTTGTTC
CTCTTCCCCTGCGCTCGGTAAAGGTATTGCCTGCTACCTCTGGAACCCGCAAAAAATCCCCGATT
CCCGTTCACCTGCGCAGGAGTTCAAACAACCCGCACTCTTTTTTT
Found at i:211132 original size:5 final size:5
Alignment explanation
Indices: 211122--211148 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
211112 CAGGGGTTCT
211122 CCTCC CCTCC CCTCC CCTCC CCTCC CC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CC
211149 GGGGAAGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 210622 -- 211121
TAGTTGAGCCATTGCCTGAGAACCTTTTTTCGGAATCCAGACCTTACCACTTCGGACCTTCGCAA
GCAAGCAACTTTTGCTTCCCCTTCACCGCTGCGCTCAGCAGAAGTTCACACAAACAAACAACCAA
CCGGTTGCAGAAGGTTGGAAGTTCTTGACCGAGCACCGCGAGGAACTTCTTGGAGCTTGCTTGCT
TTTCCCGCAATAAAAGTAAGTTCACCGTGGGCAGAGAGACCAACCCGCACTCTTTTTTTGAAATC
CCCTTTTGTGAAGGGCCGGGTTGACCGGACCTCCAGAAGGAACTTCTGCTTCGCGTAGCGAAGTT
CTTGTTGGCGTGTTGAATCTGAGCGCAGCTTTCCCTTCCCCCGTGCCGTTCTTGTTGGGCAGGGG
GCCGGTTGGTTGGCTGGTTCTTCGCGTAGCAGAAGAGACTTATGCTGCCTGCGGTTGGCAGGCAG
TTGGGGAAGACCGGTTGTTTGGTTGGTTCTTCGCGCAGGGGTTCT
Right flanking sequence: Indices 211149 -- 211648
GGGGAAGAGTTCTTGTTGGCCTTCGTGTTGAATCTGAGCGCAGGGGTTCTCCGGAGTGAAGGAGA
AAAGATCGGAAGACCCGCATGCATTCCTGGGCGCACGCTTTATCACCAACCAGGTATGTGCAGAA
GTCCCGAGCGCAGGGGTTCTCACTTCAGAGGAATATAAGAGAGAGTTTCAGGTATGTGCAGAAGT
CCCGAGCGCAGGCCCTTTTCCCCTGCGAGGACTTCTGCGTGCAGAAGTCCCGAGCGCAGGGTTTT
TAAAAGGTGAAGGGAAGAGCAGTATAGACCCACAACATCGATACAGCGTGCCGGTTCTTCCCCCA
CGTTTTGAGAGAGTAATTGGAATGGATAGGGGAGTGCTAGGGATAAGGAATGAGAATGAACCTAC
TTAACTCAGTGGTTAGAGTATCGCTTTCATACGGCGAGAGTCATTGGTTCAAATCCAATAGTAGG
TAAGGACTTACTTTGGTAATATAGCAAGGCTAGGATGTCGGGGTG
Found at i:212662 original size:20 final size:20
Alignment explanation
Indices: 212637--212677 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
212627 TGGCCCAACG
* *
212637 GTGCCACTACGTTTGAATGA
1 GTGCCACAAAGTTTGAATGA
212657 GTGCCACAAAGTTTGAATGA
1 GTGCCACAAAGTTTGAATGA
212677 G
1 G
212678 GGAAGGAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (20 bp):
GTGCCACAAAGTTTGAATGA
Left flanking sequence: Indices 212137 -- 212636
TGGCCGAGTGTCCCTACATACAGGGAACCCCAAAGTGCCGTTCCGGGGTCCCTCCCGTTGATCGG
TCGAGTGTACCGTGCCGGGGCTTCCCCCGGGGAGAGGGGCCCGGCACCGAACGGCGACCCTCGAC
CTCTTGTTTGTTTTCAAAGGACCTCCAAAACAAAACAAAAGAATCTGAGCGCAGAAACCAACTTG
AAACTTGCAACCCTTCTGCCTGCTTAAAAGTTGGACCTGAAAGGGTTGCAGGCAGGCAGAGACTT
CTGCTTCGCGCAGAAACCAAGACCTCCCCCCTTCTGCAAAGCAAAAAAAATATCTTGAAAGTTGG
AGTGTTGGTTGCAGAAGAACTTCTGCAGTTCTTCTGCTTCGCGCAGCGAAGAACTTCTGCGGATT
TAAAAAGTGCCAAAAGTTCTGAGCGCAGCTTTCCCCCGTGCGGGAACAGGTAGGCACGGATTACT
GCCACTTCTTCCCGACCCGGGCAACAACTTCAAAATGGCCCAACG
Right flanking sequence: Indices 212678 -- 213177
GGAAGGAGTTACGAGTGGTTCAAAGCAGAAGTTCTTTTCCCCGCTGCGCTCAGAAAGCAAGCAAG
CTCTTTTGGCACGCACTTAAAGCGTGCGTGTTGGAAATCCTTGGATCCCGACAACTTTTAACGGC
AACTTAAATCCGTGCCTACCTTTGTTTGTAATTTCGAAACTCTTCGGCACGGCAAAGAAAAGTTT
CCTTCGTGCCACAGTTTTCGAAACTTTTCGTGCGTGCAGGGGAGGGGCCCCAACCCAAAAAAAGG
GTTGTTGGTTGCAGGGCAGAGCAGAGCTTTTTGGAACCAAAACTTCTGCTTCCAAAAAGCAAGCA
GGGGAAAAGGTTGTAAGAAAGCAGAAGTTCTTCTTCGCGCAGCGGGGGAAGCCCTGCGAACTTAT
GCTTCCAAAAAGCAAGCAGGCAGAAGGTTGGTTGTTTGGAAGTTCTTTACCGAGCGCAGCGAGAA
CACCCGGTGCGGGAAAAGGTTGTTTGAAAGCAGAAGTTCTTCTGA
Found at i:213389 original size:5 final size:5
Alignment explanation
Indices: 213379--213414 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
213369 CAGGGGTTCT
213379 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
213415 GGGGAAGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 212879 -- 213378
TGCCACAGTTTTCGAAACTTTTCGTGCGTGCAGGGGAGGGGCCCCAACCCAAAAAAAGGGTTGTT
GGTTGCAGGGCAGAGCAGAGCTTTTTGGAACCAAAACTTCTGCTTCCAAAAAGCAAGCAGGGGAA
AAGGTTGTAAGAAAGCAGAAGTTCTTCTTCGCGCAGCGGGGGAAGCCCTGCGAACTTATGCTTCC
AAAAAGCAAGCAGGCAGAAGGTTGGTTGTTTGGAAGTTCTTTACCGAGCGCAGCGAGAACACCCG
GTGCGGGAAAAGGTTGTTTGAAAGCAGAAGTTCTTCTGAGCGCAGCGGCAGAGGTGGCAGGCAGG
AGTTTCAAACAACCTTCTGCCTGCCTGCCTGCGGGGGAAGCGGTTGAATCTGAGCGCAGGGGTTC
TCCCCTCCCCTCCGCTCCGGGGTGGAAAAGAACTTCTGCTTTCAAACAACCAACAACCTTTTGCC
TTCTGCCTGCGGGTTGGCGGGGGTTGTTCTGATCGCAGGGGTTCT
Right flanking sequence: Indices 213415 -- 213914
GGGGAAGAGAACTTCTGCGGATTTCAAAAAAAGAGTGCAACTTCTGCACCAAGGTTTGGTTGGGT
TAAAAGTTGGGTTGGGTTGAAAGTTGGTTTCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGC
ACACTTTAAAGTTGGACCGGACCAATAAAGTTGTTCTGAGCGCAGCAGACTTCTGCTGCCAAACA
ATTCTTCTGCACACTTTAAAGAAAGCAAGCAAGAGACACTTTTTGCCACGGCTTGCGTGAAACTT
CTGCTTCGCGCAGCGAAGCGAAGGAATGCTTCTTCTTAAGCCGGCCGTTCAAGCGAAGCGATCTT
TCTATGTACTAATCTCTATTCAACAATCTCAGCCCATGATGGCAGCCCGGCACTCTCTGGCGATG
AAGCAATTGTCAGTAGCACGTCTAGACAGGTGGGGTCCAGTGCTTGTCGTGTGCTACACATGCCC
AACACGCTCTTACACACTGACTAACTGTTGGGCACAGCCCCCCCC
Found at i:213494 original size:17 final size:17
Alignment explanation
Indices: 213472--213506 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
213462 ACCAAGGTTT
213472 GGTTGGGTTAAAAGTTG
1 GGTTGGGTTAAAAGTTG
*
213489 GGTTGGGTTGAAAGTTG
1 GGTTGGGTTAAAAGTTG
213506 G
1 G
213507 TTTCGCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (17 bp):
GGTTGGGTTAAAAGTTG
Left flanking sequence: Indices 212972 -- 213471
AACCAAAACTTCTGCTTCCAAAAAGCAAGCAGGGGAAAAGGTTGTAAGAAAGCAGAAGTTCTTCT
TCGCGCAGCGGGGGAAGCCCTGCGAACTTATGCTTCCAAAAAGCAAGCAGGCAGAAGGTTGGTTG
TTTGGAAGTTCTTTACCGAGCGCAGCGAGAACACCCGGTGCGGGAAAAGGTTGTTTGAAAGCAGA
AGTTCTTCTGAGCGCAGCGGCAGAGGTGGCAGGCAGGAGTTTCAAACAACCTTCTGCCTGCCTGC
CTGCGGGGGAAGCGGTTGAATCTGAGCGCAGGGGTTCTCCCCTCCCCTCCGCTCCGGGGTGGAAA
AGAACTTCTGCTTTCAAACAACCAACAACCTTTTGCCTTCTGCCTGCGGGTTGGCGGGGGTTGTT
CTGATCGCAGGGGTTCTCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCGGGGAAGAGAAC
TTCTGCGGATTTCAAAAAAAGAGTGCAACTTCTGCACCAAGGTTT
Right flanking sequence: Indices 213507 -- 214006
TTTCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGTTGGACCGGACCAATA
AAGTTGTTCTGAGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCA
AGCAAGAGACACTTTTTGCCACGGCTTGCGTGAAACTTCTGCTTCGCGCAGCGAAGCGAAGGAAT
GCTTCTTCTTAAGCCGGCCGTTCAAGCGAAGCGATCTTTCTATGTACTAATCTCTATTCAACAAT
CTCAGCCCATGATGGCAGCCCGGCACTCTCTGGCGATGAAGCAATTGTCAGTAGCACGTCTAGAC
AGGTGGGGTCCAGTGCTTGTCGTGTGCTACACATGCCCAACACGCTCTTACACACTGACTAACTG
TTGGGCACAGCCCCCCCCTTATTACGATGTTGTCCACTGTTATCTCTGACTCTTCGCCTGACCTA
GGCAGTCCTAGCTCCACTATGCACCTCTCTACTCCTGGGGCGGGC
Found at i:214635 original size:5 final size:5
Alignment explanation
Indices: 214625--214712 Score: 104
Period size: 5 Copynumber: 17.2 Consensus size: 5
214615 GCGCGAAGCT
*** ***
214625 CTTCC CTTCC CTTCC CTGGAA CTTCC CTTCC CTGGAA CTTCC CTTCC CTTCC
1 CTTCC CTTCC CTTCC CT-TCC CTTCC CTTCC CT-TCC CTTCC CTTCC CTTCC
214677 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC C
1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC C
214713 GGGCCGGGCC
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
5 65 0.94
6 4 0.06
ACGTcount: A:0.05, C:0.55, G:0.05, T:0.36
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 214125 -- 214624
TGCCAGTGCTAATGACACCTATCACACCGTCAGTGGCGTAAGGCACAGTCTTGCAATAGGCCTTC
GCCCCGAATTATTATTAATGTATTTAAATCTATGGGCTGTAGGCCCTTTCCAGAAGATTTCGTAA
ATAGAATGGGTTAGTCACGGTCGAGTTCTCGCCCGTAGTAAAAGAAATAACTACTCCGTTCTGGG
AGAATAGTTCCAATGGTAGAACAATGGTCTCCAAAACCAAAGGTTAAGGGTTCGAGTCCCTTTTC
TCCCGACACACAGTGCGGGGTCCTGCAATCCGGCTCTAGGATAATCAACGAATAGATGCCGGCTT
ATTCACTTCGAGTTCATGTGCAACTAACTTGAACTGCGGCGATCCGAAAACAAACAAACAAACAA
CCAACCAAACTCCTGCGTCTAATTTTCGGATAAGCCAAACCCGCACGCCTTCGCTTCGCTGCGCT
CAGAACAACTTTCTTGTTTCCAAAAAGAGCCCGCTGCGCGAAGCT
Right flanking sequence: Indices 214713 -- 215212
GGGCCGGGCCGGAGGTCCAAAAAAAAAAGTGTGCAGAAGGGTTGGGTTAAAAGTTGGGTTGGGTT
TCTGCGCGAAGCAGAAGTTTGGAGTGGGATACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAG
AATTGTTTGGCAGCAGAAGTCTGCTGCGCTCAGAACAACGCGCAAGCTTTCTTGGTCCAAAGAAA
AGCGCGCGCAAAACAAAACAAACATCAAACCCCCTTTTTTGCATGCAAAAAATCCCGCTGAACTT
CTGGAGGCAGAAGTTAGTTTCTTCTGCACACGGCCCAAAGGCAGAAGTCTCTTTCTTCGCTGCGC
ATTACCCTTTTTGGAGGCAAAAAGGAGAGGGTAGAGGGTAGCAGTTAGTTTGCGGTGTTGCAGGC
AGAAGTCTCTTCAGATTCTTCTGCTGCTTTCGCAGCCGCACTCTTTTTTTCGGCTCGGCAGAAGT
TCTCTCCCCCCCCCTGCGCTCAGGATTTTTTGTAGGTGTGAACCT
Found at i:214651 original size:16 final size:16
Alignment explanation
Indices: 214630--214673 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
214620 AAGCTCTTCC
214630 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
214646 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
214662 CTTCCCTTCCCT
1 CTTCCCTTCCCT
214674 TCCCTTCCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.09, C:0.48, G:0.09, T:0.34
Consensus pattern (16 bp):
CTTCCCTTCCCTGGAA
Left flanking sequence: Indices 214130 -- 214629
GTGCTAATGACACCTATCACACCGTCAGTGGCGTAAGGCACAGTCTTGCAATAGGCCTTCGCCCC
GAATTATTATTAATGTATTTAAATCTATGGGCTGTAGGCCCTTTCCAGAAGATTTCGTAAATAGA
ATGGGTTAGTCACGGTCGAGTTCTCGCCCGTAGTAAAAGAAATAACTACTCCGTTCTGGGAGAAT
AGTTCCAATGGTAGAACAATGGTCTCCAAAACCAAAGGTTAAGGGTTCGAGTCCCTTTTCTCCCG
ACACACAGTGCGGGGTCCTGCAATCCGGCTCTAGGATAATCAACGAATAGATGCCGGCTTATTCA
CTTCGAGTTCATGTGCAACTAACTTGAACTGCGGCGATCCGAAAACAAACAAACAAACAACCAAC
CAAACTCCTGCGTCTAATTTTCGGATAAGCCAAACCCGCACGCCTTCGCTTCGCTGCGCTCAGAA
CAACTTTCTTGTTTCCAAAAAGAGCCCGCTGCGCGAAGCTCTTCC
Right flanking sequence: Indices 214674 -- 215173
TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCGGGCCGGGCCGGAGGTCCAAAAAAAA
AAGTGTGCAGAAGGGTTGGGTTAAAAGTTGGGTTGGGTTTCTGCGCGAAGCAGAAGTTTGGAGTG
GGATACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGAATTGTTTGGCAGCAGAAGTCTGCTG
CGCTCAGAACAACGCGCAAGCTTTCTTGGTCCAAAGAAAAGCGCGCGCAAAACAAAACAAACATC
AAACCCCCTTTTTTGCATGCAAAAAATCCCGCTGAACTTCTGGAGGCAGAAGTTAGTTTCTTCTG
CACACGGCCCAAAGGCAGAAGTCTCTTTCTTCGCTGCGCATTACCCTTTTTGGAGGCAAAAAGGA
GAGGGTAGAGGGTAGCAGTTAGTTTGCGGTGTTGCAGGCAGAAGTCTCTTCAGATTCTTCTGCTG
CTTTCGCAGCCGCACTCTTTTTTTCGGCTCGGCAGAAGTTCTCTC
Found at i:219631 original size:21 final size:21
Alignment explanation
Indices: 219607--219652 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
219597 TCCGAGCACC
219607 AGGGAAGGGAAGTCCCAGGGA
1 AGGGAAGGGAAGTCCCAGGGA
*
219628 AGGGAAGGGAAGTTCCAGGGA
1 AGGGAAGGGAAGTCCCAGGGA
219649 AGGG
1 AGGG
219653 CCCTTCTGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.11, G:0.50, T:0.07
Consensus pattern (21 bp):
AGGGAAGGGAAGTCCCAGGGA
Left flanking sequence: Indices 219107 -- 219606
CCAGGTGGCCCATCAACTCAACCCTTTCCTGAATATGCGAAAGGGACTGTACTGTACCTCTAATA
TCATTTAAAACCACTCCGGCTATCTCACCAGCATTCACAATATCAGAGAGAATATCCTCATTGGT
CGAATTGTTATTAATAATGCGTTCCAATTCAGAATTAGTCAGATTTGACACGAATTGGGTTGAAA
GCAACCGGTGAAATATTCTCAATTCCTTCACGTAGCTGCGCGGAGAACCAGCTTTGCCCAACAAC
CTTGCCAAAATCTCGCAGCTACGCAGAAGTTCTTGCCACAAAAAAGAGTGCCGAGCTTGCTTGCT
TTCTGAGCGCAGCGGGGAAAAGAACCCACAAACTTCAGAGGAATATAAGAGGGAGGCAGAAGGTT
GTTTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTGCGAGAACTTACACCCTTCTGCCTTCTGC
CTTCTGCAACTGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCACC
Right flanking sequence: Indices 219653 -- 220152
CCCTTCTGCGAGGTGGCAGGCAGAAGGTTGGAAGTTCTTGACCGAGCACCGGGGAGGGGAAGGGC
CTTCTGCGAGAACTTCTGCCAACGCAGAAGGTTTGTTGGAAGTTCTTGACCGAGCACCGGGGAAG
AGGTGGCAGGTATGTGCAGAAGGGCCGAGCGCAGGGGTTCTCCGGGCCTTTTCCCCGAGGGGAGG
GGAGGGGAGGGGAGGGGAGGGGAGGGGATGGGAGGGGATGGGAGGGGATGGGAGGGGAGTGGGAG
GGGATGGGAGGGGATGGGAGGGAGGGAGTGGGAGGGGAGGGGAGAACCCCTCTTCCCCCCTGCGA
GGACTTATGCGTGCAGAAGGGTGTTTGTTCTCCGAGCACCGCGAGGGAGCAGAGCGCGAAGGGGC
GGATGGACTGGAGGAGCCGGATATGCCGGATTCCCAGCCACCGGCAGGGCAGAGCCGAAGTTCGG
TTGATCGAAGTCGTTCCTGCTATGCAGCCGCCGTACGTTTGAATT
Found at i:219849 original size:5 final size:5
Alignment explanation
Indices: 219839--219956 Score: 159
Period size: 5 Copynumber: 23.6 Consensus size: 5
219829 CCTTTTCCCC
* *
219839 GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GATGG GAGGG GATGG
1 GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG
* * *
219889 GAGGG GATGG GAGGG GAGTGG GAGGG GATGG GAGGG GATGG GA-GG GA-GG
1 GAGGG GAGGG GAGGG GAG-GG GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG
219938 GAGTGG GAGGG GAGGG GAG
1 GAG-GG GAGGG GAGGG GAG
219957 AACCCCTCTT
Statistics
Matches: 101, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
4 8 0.08
5 83 0.82
6 10 0.10
ACGTcount: A:0.20, C:0.00, G:0.74, T:0.06
Consensus pattern (5 bp):
GAGGG
Left flanking sequence: Indices 219339 -- 219838
GCGCGGAGAACCAGCTTTGCCCAACAACCTTGCCAAAATCTCGCAGCTACGCAGAAGTTCTTGCC
ACAAAAAAGAGTGCCGAGCTTGCTTGCTTTCTGAGCGCAGCGGGGAAAAGAACCCACAAACTTCA
GAGGAATATAAGAGGGAGGCAGAAGGTTGTTTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTG
CGAGAACTTACACCCTTCTGCCTTCTGCCTTCTGCAACTGTATGTGCAGAAGGGTGTAAGTTCTC
CGAGCACCAGGGAAGGGAAGTCCCAGGGAAGGGAAGGGAAGTTCCAGGGAAGGGCCCTTCTGCGA
GGTGGCAGGCAGAAGGTTGGAAGTTCTTGACCGAGCACCGGGGAGGGGAAGGGCCTTCTGCGAGA
ACTTCTGCCAACGCAGAAGGTTTGTTGGAAGTTCTTGACCGAGCACCGGGGAAGAGGTGGCAGGT
ATGTGCAGAAGGGCCGAGCGCAGGGGTTCTCCGGGCCTTTTCCCC
Right flanking sequence: Indices 219957 -- 220456
AACCCCTCTTCCCCCCTGCGAGGACTTATGCGTGCAGAAGGGTGTTTGTTCTCCGAGCACCGCGA
GGGAGCAGAGCGCGAAGGGGCGGATGGACTGGAGGAGCCGGATATGCCGGATTCCCAGCCACCGG
CAGGGCAGAGCCGAAGTTCGGTTGATCGAAGTCGTTCCTGCTATGCAGCCGCCGTACGTTTGAAT
TATTTGTAATCTGTATATTCGAGGTCGAGTATCCTATCACAAAATAAATCTTCTCGATTGCTCTT
CCGCAGCACTCTTTATGCAAGCAAGCTGATTGGATTAATCAATTCCTATGAGCGTAGCTTTCTAT
GATGAGCGGATAAACAGTGACCATGTTTCTGGTCTGCACGGTGAGACCGTAGATTGCAAGCTTGG
ATATCCGTTGATGGAATGTAGAGGAAGAAAGAAGTCTCTAGCCAACAGAAAGACCATCATCCTCA
GGATCCTCAAGTATTAGTCTTCGGAGGCCTCGATTTACCGGCCAA
Found at i:219864 original size:20 final size:20
Alignment explanation
Indices: 219839--219955 Score: 175
Period size: 20 Copynumber: 5.8 Consensus size: 20
219829 CCTTTTCCCC
*
219839 GAGGGGAGGGGAGGGGAGGG
1 GAGGGGAGGGGAGGGGATGG
219859 GAGGGGAGGGGAGGGGATGG
1 GAGGGGAGGGGAGGGGATGG
*
219879 GAGGGGATGGGAGGGGATGG
1 GAGGGGAGGGGAGGGGATGG
219899 GAGGGGAGTGGGAGGGGATGG
1 GAGGGGAG-GGGAGGGGATGG
*
219920 GAGGGGATGGGA-GGGA-GG
1 GAGGGGAGGGGAGGGGATGG
219938 GAGTGGGAGGGGAGGGGA
1 GAG-GGGAGGGGAGGGGA
219956 GAACCCCTCT
Statistics
Matches: 89, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
18 5 0.06
19 12 0.13
20 53 0.60
21 19 0.21
ACGTcount: A:0.21, C:0.00, G:0.74, T:0.06
Consensus pattern (20 bp):
GAGGGGAGGGGAGGGGATGG
Left flanking sequence: Indices 219339 -- 219838
GCGCGGAGAACCAGCTTTGCCCAACAACCTTGCCAAAATCTCGCAGCTACGCAGAAGTTCTTGCC
ACAAAAAAGAGTGCCGAGCTTGCTTGCTTTCTGAGCGCAGCGGGGAAAAGAACCCACAAACTTCA
GAGGAATATAAGAGGGAGGCAGAAGGTTGTTTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTG
CGAGAACTTACACCCTTCTGCCTTCTGCCTTCTGCAACTGTATGTGCAGAAGGGTGTAAGTTCTC
CGAGCACCAGGGAAGGGAAGTCCCAGGGAAGGGAAGGGAAGTTCCAGGGAAGGGCCCTTCTGCGA
GGTGGCAGGCAGAAGGTTGGAAGTTCTTGACCGAGCACCGGGGAGGGGAAGGGCCTTCTGCGAGA
ACTTCTGCCAACGCAGAAGGTTTGTTGGAAGTTCTTGACCGAGCACCGGGGAAGAGGTGGCAGGT
ATGTGCAGAAGGGCCGAGCGCAGGGGTTCTCCGGGCCTTTTCCCC
Right flanking sequence: Indices 219956 -- 220455
GAACCCCTCTTCCCCCCTGCGAGGACTTATGCGTGCAGAAGGGTGTTTGTTCTCCGAGCACCGCG
AGGGAGCAGAGCGCGAAGGGGCGGATGGACTGGAGGAGCCGGATATGCCGGATTCCCAGCCACCG
GCAGGGCAGAGCCGAAGTTCGGTTGATCGAAGTCGTTCCTGCTATGCAGCCGCCGTACGTTTGAA
TTATTTGTAATCTGTATATTCGAGGTCGAGTATCCTATCACAAAATAAATCTTCTCGATTGCTCT
TCCGCAGCACTCTTTATGCAAGCAAGCTGATTGGATTAATCAATTCCTATGAGCGTAGCTTTCTA
TGATGAGCGGATAAACAGTGACCATGTTTCTGGTCTGCACGGTGAGACCGTAGATTGCAAGCTTG
GATATCCGTTGATGGAATGTAGAGGAAGAAAGAAGTCTCTAGCCAACAGAAAGACCATCATCCTC
AGGATCCTCAAGTATTAGTCTTCGGAGGCCTCGATTTACCGGCCA
Found at i:221643 original size:4 final size:4
Alignment explanation
Indices: 221634--221671 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
221624 GTGGCACTTT
*
221634 TTGC TTGC TTGC TTGC TTGC CTGC TTGC TTGC TTGC TT
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TT
221672 TCTGAGCGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.00, C:0.26, G:0.24, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 221134 -- 221633
TCAATGGCGAGCGGTTTTGGGCATGCATGTGGAATCCACATGGATTGCGGCGGAAGGCCTAGCCC
AATATCCCGTAAGAGAAGAGATTGCTTCCCCTACACCGCTAAGTATCCAGAGACACCGAGCCCCC
ACGACTGGGATTACTTCCCGTCGAGCCACTAAAGCAAGCAATACCAGCCAGGAACTAATGGCAAG
TAACCTGGCATTAGATCTTTGATGGATCGATTGATTGATTATCCGTCCTAGCCACCAAGCTTTGA
TTGAAGAGCTAGCTGTAGACACCACCAACGATGGCTGGGAGGCTGGCTTCAAAGAGATGCGATTG
ATTCACGAGCTGGCATGTTTTGATTGAGGGATTGATGGAAGGAGGGATAGTGGGACAACTTGGAT
CCCGGCTTTGCCGTCGTTGAAGATTGGGGTTCTCTGTCAAACGGTTCCGGGGAAAGCCCGGCAAC
CTACAAGCAAGGACGGATTTTCAACTGCCTGTGCCGTGGCACTTT
Right flanking sequence: Indices 221672 -- 222171
TCTGAGCGCAGCTTTCCCCTCCCCTCCCCGGAACAGCAAACTTTGTAGGCTGCTTTAGCGGATGG
CCCAGGCTAACTCTGCCGGGCAATTCGTGCGTGCCACAAGCAAGCCTTGTGGCGGTTGGTTGTTT
CGTAGTGGCACTACCCACCTCAGATCCTTGGATCCCTTAATCCACTCGTGCCTGCCATCCACTCT
CTTCTCTCTCGCCCAGAGGGAAGTTCCAGGGTTTCCCCCAGGGTTTCCCCCAGGGAAGTTCCAGG
GAAGGGAAGGGAATAGATTACTCTGAAAAGAGAACTTCCAAGGTAGAGGGGGATCCAAGTTATGA
GGGAGTCCCGTGCTAGCCGGGGGATCCAAGGAGTTAGTCCCTAACGGTACTCCCTCCCTCCTTGG
ATCCCCCTATCGGGACTGACTCCTTGGATCCCCTATCGGGGGAAGACACTCTCCCTTAATCCACG
ACCCTGGCACGCACGGAAATCAATCCGGCGAACAATATGGCCGGA
Found at i:221916 original size:11 final size:12
Alignment explanation
Indices: 221892--221921 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
221882 GAGGGAAGTT
221892 CCAGGGTTTCCC
1 CCAGGGTTTCCC
221904 CCAGGGTTTCCC
1 CCAGGGTTTCCC
221916 CCAGGG
1 CCAGGG
221922 AAGTTCCAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.40, G:0.30, T:0.20
Consensus pattern (12 bp):
CCAGGGTTTCCC
Left flanking sequence: Indices 221392 -- 221891
GATTGAAGAGCTAGCTGTAGACACCACCAACGATGGCTGGGAGGCTGGCTTCAAAGAGATGCGAT
TGATTCACGAGCTGGCATGTTTTGATTGAGGGATTGATGGAAGGAGGGATAGTGGGACAACTTGG
ATCCCGGCTTTGCCGTCGTTGAAGATTGGGGTTCTCTGTCAAACGGTTCCGGGGAAAGCCCGGCA
ACCTACAAGCAAGGACGGATTTTCAACTGCCTGTGCCGTGGCACTTTTTGCTTGCTTGCTTGCTT
GCCTGCTTGCTTGCTTGCTTTCTGAGCGCAGCTTTCCCCTCCCCTCCCCGGAACAGCAAACTTTG
TAGGCTGCTTTAGCGGATGGCCCAGGCTAACTCTGCCGGGCAATTCGTGCGTGCCACAAGCAAGC
CTTGTGGCGGTTGGTTGTTTCGTAGTGGCACTACCCACCTCAGATCCTTGGATCCCTTAATCCAC
TCGTGCCTGCCATCCACTCTCTTCTCTCTCGCCCAGAGGGAAGTT
Right flanking sequence: Indices 221922 -- 222421
AAGTTCCAGGGAAGGGAAGGGAATAGATTACTCTGAAAAGAGAACTTCCAAGGTAGAGGGGGATC
CAAGTTATGAGGGAGTCCCGTGCTAGCCGGGGGATCCAAGGAGTTAGTCCCTAACGGTACTCCCT
CCCTCCTTGGATCCCCCTATCGGGACTGACTCCTTGGATCCCCTATCGGGGGAAGACACTCTCCC
TTAATCCACGACCCTGGCACGCACGGAAATCAATCCGGCGAACAATATGGCCGGACTCTACTCCT
CAGGTAGGACTTGAACCTACGACCGATCGGTTAACAGCCGACCGCTCTACCACTGAGCTACTGGG
GATCGGAAAGGTTGCGAGTGCCTGGGCCTGGCACGGCACGTGCCCAGGGTAAAAGGCGCAACGTT
TGAAGGAGGGAGGGAAGGAGTTCCGAGTGGTTCCTGGCACGGTAGCTGCGCTCAGCAATCAATCT
TTTTCGGACGGATTTACTCGGCTCGGGGGAGGGGAGGGGAGGGGA
Found at i:222410 original size:5 final size:5
Alignment explanation
Indices: 222402--222431 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
222392 ACTCGGCTCG
222402 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
222432 AAGCTGCGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 221902 -- 222401
CCCCAGGGTTTCCCCCAGGGAAGTTCCAGGGAAGGGAAGGGAATAGATTACTCTGAAAAGAGAAC
TTCCAAGGTAGAGGGGGATCCAAGTTATGAGGGAGTCCCGTGCTAGCCGGGGGATCCAAGGAGTT
AGTCCCTAACGGTACTCCCTCCCTCCTTGGATCCCCCTATCGGGACTGACTCCTTGGATCCCCTA
TCGGGGGAAGACACTCTCCCTTAATCCACGACCCTGGCACGCACGGAAATCAATCCGGCGAACAA
TATGGCCGGACTCTACTCCTCAGGTAGGACTTGAACCTACGACCGATCGGTTAACAGCCGACCGC
TCTACCACTGAGCTACTGGGGATCGGAAAGGTTGCGAGTGCCTGGGCCTGGCACGGCACGTGCCC
AGGGTAAAAGGCGCAACGTTTGAAGGAGGGAGGGAAGGAGTTCCGAGTGGTTCCTGGCACGGTAG
CTGCGCTCAGCAATCAATCTTTTTCGGACGGATTTACTCGGCTCG
Right flanking sequence: Indices 222432 -- 222931
AAGCTGCGCTCAGATTGCACGGGGGAAAGGTCCTGGCACGCACGCACGGGGGAAAGCTGCGCTCA
GGACTTTTCGGCACGCACCGCACTTAAAGCGTGCGTGTTGGCCTTTGTGAACGTGATAGAAGTGG
CACGCACCTATTTCCACCCCACGTGCCTTTGTAAGCGAAACTCTTCGTGCAAAAGCCAGCCCTTC
CCCGTGATAAAGAGTTGTGGCCAGCCGGATCCAAGGCAACCAACTTTAAGTGCCAAAAGAGCTTG
CTTGCTTTCTGAGCGCAGCTTTCCCCCGTGCCAGGACACCTGAGAGTTAGTTCTTCGCGCAGGGG
AATAAGTTCAGGTGTCCCACTCTTTCCCCCCGACTTCTAAAGCAGTTTGCGCGCTCGCCGTTGCA
CGAATTTCGCACGCACGCAAGCAACTCAATCCGTGCCACTTCGAAACTTCCCTTACCTTCCCGTG
TGGGGGAACAAGTGGCCAACAAAAACCAACCTCTCATTGGCCCTC
Found at i:223313 original size:15 final size:15
Alignment explanation
Indices: 223295--223328 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
223285 GAGACTTCTG
223295 CTTCTTCTTCTTCCC
1 CTTCTTCTTCTTCCC
223310 CTTCTTCTTCTTCCC
1 CTTCTTCTTCTTCCC
223325 CTTC
1 CTTC
223329 CCCCCGCGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (15 bp):
CTTCTTCTTCTTCCC
Left flanking sequence: Indices 222795 -- 223294
AAAGCAGTTTGCGCGCTCGCCGTTGCACGAATTTCGCACGCACGCAAGCAACTCAATCCGTGCCA
CTTCGAAACTTCCCTTACCTTCCCGTGTGGGGGAACAAGTGGCCAACAAAAACCAACCTCTCATT
GGCCCTCATTCAAACAACCAACCTTCAAATTGGGCACTACCGTTAAAGGGTGCCAGGCGAAGAGA
AGAGGGCTTGCTTGCCGGAGAAACGCTATGTACCTCGTAGGACAGGGATCGCCGCCCCTGCCGCG
GTTTCGCTAACTGCGCTTCCGCAGTCCTTGAAAGTTAGTTTCAAGGTGTGCAGAAGGCCAAAGGT
TGGTTGTTGGCTGTTTGAATCTGAGCGCAGCTTTCCCTTCCCCCGTGCCAGGTCAAAGAGAGTTA
TGAGCGCAGGGGAAGGAGCAGAAGTTCACACAAACAACCAACCCGTCCAAAAAGCAAGCAAGCTT
TAAAGTTAGTTGGGACGGGACGGATCTCCGCAGAAGAGACTTCTG
Right flanking sequence: Indices 223329 -- 223828
CCCCCGCGCAGGGGAATAAGTTCAGGGCCGAATCTTCGCGTAGCGAAGCAGAAGTTCACACAAAC
AACCCTTCTGCCAAGAAGGCTTGCGTGTTTAATCTTCGCGCAGGGGAATAAGTTCAGGTTGCAGA
AGAACTTCTGCAGTTCTTCTGCTTCGCGCAGAAACCACCCCAGAAGTGTGTTTCAACCAACTTTC
CTTCTGCACACTTGAAAGCAAGCAAGCAAGCTTTAAAGTTAGTTGGGACGGGACGGATCTCCGCA
GAAGAGACTTCTGCTTCGCACAGCTACGCAGAAGTTCACACAAACAACCCTTCTGCCAAGCGGTT
GAATCTTCGCGTAGCGGGGGAAGGAGAATAACTTCTGCTTTCAAACAACCAACAACCTTTTGCTG
CCTGCCAAGAAGGCTTGCGTGTTTAATCTTCGCGCAGGGGAATAAGTTCAGGTTGCAGAAGAACT
TCTGCAGTTCTTCTGCTTCGCGCAGGGGAATAAGTTCAGGTAGCG
Found at i:225074 original size:15 final size:15
Alignment explanation
Indices: 225054--225087 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
225044 TGCGCGGGGG
225054 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
225069 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
225084 GAAG
1 GAAG
225088 CAGAAGTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (15 bp):
GAAGGGGAAGAAGAA
Left flanking sequence: Indices 224554 -- 225053
TGCGGGTTGACCGGACCGGTTGGTTGGCTGGTTCTTCGCGTAGCGAAGTTCTTGTTGGGGGCCGG
CAAGCTGTTCTCCGCGCAGGGGTTCTCCTCCCCTCCCCCGGGGAGGGGAAGAGTTCTTGTTGGCG
TGTTGAATCTGAGCGCAGAAACCAACAACCAACCTTCTGCCTGCTTAAAAGTTGGACCGGGTTGC
AGGGTTTCTTCGCGCAGAAACCAACAACCAACCTTCTGCCTGCGGGCCGGGTTGCAGGGCGCGCA
GGGGAAGAAGTTCTTGTTGGGCAAAGCTGGTTCTCCGCGCAGGGGAAGGGGAAGAGAACACCCGG
CCCGGATTTCCAACTTTCTTTAAGTCCTGAGCGCAGCTTTCCCTTCCCCCGTGAAGGCAGGCACG
GGAACAACCTTAACTTTTTTGCCACAAATCGTGCCCCTCCCCTTTTCGTGCAGAAGGCTGAAAGT
TGCCCTTCCCCCGTGCCTACCTGAACTTATTCCCCTGCGCGGGGG
Right flanking sequence: Indices 225088 -- 225587
CAGAAGTTCACACCAAACAACCAACCTTCTGGAAACCGGCCCAATAAGTTTGTGTGAACTTCCCC
CGCGGTGCTCTCTCTTATATTCCTCTGAAGTGAGAACTTACACCCTTCTGCACATACCTTTGTAA
GTAATTTCGTGGCCTGAAAGAGCGAGCGTTGGAACCCGCACGCAAGAAGTTAGTCCCGCTGCGCT
CAGGGAAGCAGAAGTTCTTCTGCTTCTTCTGCAACACCGCGGGTCCTGAACTTATTCCCCTGCGC
ATTTTTTTGGAGGTCTTCCCCAAAAAGTAAAGTGTGAACTTCTTCTTCCCTTCCCCCCTGCGACT
TTTGTTTTGTTCACACCTTGGATCCAACTTTATTTCTTGATTTCTTTCTTGATTTCTTCCCACCA
AAAGTTTGTTTTCGAATGAGTGCCACCCTTTTGCACGAAAAGCAAGCAAGCAAGCAAGCAAGCAA
GCAAGCTTGGCTGGCACGTGGCCAAACAAACTCATTCTTCTAAAA
Found at i:225093 original size:15 final size:15
Alignment explanation
Indices: 225060--225093 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
225050 GGGGGAAGGG
**
225060 GAAGAAGAAGAAGGG
1 GAAGAAGAAGAAGCA
225075 GAAGAAGAAGAAGCA
1 GAAGAAGAAGAAGCA
225090 GAAG
1 GAAG
225094 TTCACACCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.41, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAGAAGCA
Left flanking sequence: Indices 224560 -- 225059
TTGACCGGACCGGTTGGTTGGCTGGTTCTTCGCGTAGCGAAGTTCTTGTTGGGGGCCGGCAAGCT
GTTCTCCGCGCAGGGGTTCTCCTCCCCTCCCCCGGGGAGGGGAAGAGTTCTTGTTGGCGTGTTGA
ATCTGAGCGCAGAAACCAACAACCAACCTTCTGCCTGCTTAAAAGTTGGACCGGGTTGCAGGGTT
TCTTCGCGCAGAAACCAACAACCAACCTTCTGCCTGCGGGCCGGGTTGCAGGGCGCGCAGGGGAA
GAAGTTCTTGTTGGGCAAAGCTGGTTCTCCGCGCAGGGGAAGGGGAAGAGAACACCCGGCCCGGA
TTTCCAACTTTCTTTAAGTCCTGAGCGCAGCTTTCCCTTCCCCCGTGAAGGCAGGCACGGGAACA
ACCTTAACTTTTTTGCCACAAATCGTGCCCCTCCCCTTTTCGTGCAGAAGGCTGAAAGTTGCCCT
TCCCCCGTGCCTACCTGAACTTATTCCCCTGCGCGGGGGGAAGGG
Right flanking sequence: Indices 225094 -- 225593
TTCACACCAAACAACCAACCTTCTGGAAACCGGCCCAATAAGTTTGTGTGAACTTCCCCCGCGGT
GCTCTCTCTTATATTCCTCTGAAGTGAGAACTTACACCCTTCTGCACATACCTTTGTAAGTAATT
TCGTGGCCTGAAAGAGCGAGCGTTGGAACCCGCACGCAAGAAGTTAGTCCCGCTGCGCTCAGGGA
AGCAGAAGTTCTTCTGCTTCTTCTGCAACACCGCGGGTCCTGAACTTATTCCCCTGCGCATTTTT
TTGGAGGTCTTCCCCAAAAAGTAAAGTGTGAACTTCTTCTTCCCTTCCCCCCTGCGACTTTTGTT
TTGTTCACACCTTGGATCCAACTTTATTTCTTGATTTCTTTCTTGATTTCTTCCCACCAAAAGTT
TGTTTTCGAATGAGTGCCACCCTTTTGCACGAAAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGC
TTGGCTGGCACGTGGCCAAACAAACTCATTCTTCTAAAAGTGGCC
Found at i:225462 original size:12 final size:12
Alignment explanation
Indices: 225445--225470 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
225435 TCCAACTTTA
225445 TTTCTTGATTTC
1 TTTCTTGATTTC
225457 TTTCTTGATTTC
1 TTTCTTGATTTC
225469 TT
1 TT
225471 CCCACCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTCTTGATTTC
Left flanking sequence: Indices 224945 -- 225444
GAACAACCTTAACTTTTTTGCCACAAATCGTGCCCCTCCCCTTTTCGTGCAGAAGGCTGAAAGTT
GCCCTTCCCCCGTGCCTACCTGAACTTATTCCCCTGCGCGGGGGGAAGGGGAAGAAGAAGAAGGG
GAAGAAGAAGAAGCAGAAGTTCACACCAAACAACCAACCTTCTGGAAACCGGCCCAATAAGTTTG
TGTGAACTTCCCCCGCGGTGCTCTCTCTTATATTCCTCTGAAGTGAGAACTTACACCCTTCTGCA
CATACCTTTGTAAGTAATTTCGTGGCCTGAAAGAGCGAGCGTTGGAACCCGCACGCAAGAAGTTA
GTCCCGCTGCGCTCAGGGAAGCAGAAGTTCTTCTGCTTCTTCTGCAACACCGCGGGTCCTGAACT
TATTCCCCTGCGCATTTTTTTGGAGGTCTTCCCCAAAAAGTAAAGTGTGAACTTCTTCTTCCCTT
CCCCCCTGCGACTTTTGTTTTGTTCACACCTTGGATCCAACTTTA
Right flanking sequence: Indices 225471 -- 225970
CCCACCAAAAGTTTGTTTTCGAATGAGTGCCACCCTTTTGCACGAAAAGCAAGCAAGCAAGCAAG
CAAGCAAGCAAGCTTGGCTGGCACGTGGCCAAACAAACTCATTCTTCTAAAAGTGGCCCCGCCCC
TTCCGTGCCAGCCTACCTTTGTAAGCGAAACTCTTCGGCAGATAGGAGTTACGAGTGGGACACGA
TAACGACGTTTCGGTCCCGTTAAACGAGTCGGGATCCAAGTACCCACTATCCCTCCTTCCTTCGT
GCAAACTGATCCGTGCACCCGTGAACTTCTGCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTT
GTTTGTGGGCCTTCCCCTGCGCTCGGCCCTTCTGCACATACCTTTGTAATATAATAATCCGGGCA
AGAAACTAACTTTAGCATCAGGAGTTAGTTCTTCTGAAGAGTGTTATTCGTGCCTTGGGTGTTTG
TTGCAAGAAAGAACTTCTGCTTCGCTGCGCTCAGAAAGAAACTAA
Found at i:225526 original size:4 final size:4
Alignment explanation
Indices: 225517--225548 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
225507 TTTGCACGAA
225517 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
225549 TTGGCTGGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00
Consensus pattern (4 bp):
AAGC
Left flanking sequence: Indices 225017 -- 225516
CCCCGTGCCTACCTGAACTTATTCCCCTGCGCGGGGGGAAGGGGAAGAAGAAGAAGGGGAAGAAG
AAGAAGCAGAAGTTCACACCAAACAACCAACCTTCTGGAAACCGGCCCAATAAGTTTGTGTGAAC
TTCCCCCGCGGTGCTCTCTCTTATATTCCTCTGAAGTGAGAACTTACACCCTTCTGCACATACCT
TTGTAAGTAATTTCGTGGCCTGAAAGAGCGAGCGTTGGAACCCGCACGCAAGAAGTTAGTCCCGC
TGCGCTCAGGGAAGCAGAAGTTCTTCTGCTTCTTCTGCAACACCGCGGGTCCTGAACTTATTCCC
CTGCGCATTTTTTTGGAGGTCTTCCCCAAAAAGTAAAGTGTGAACTTCTTCTTCCCTTCCCCCCT
GCGACTTTTGTTTTGTTCACACCTTGGATCCAACTTTATTTCTTGATTTCTTTCTTGATTTCTTC
CCACCAAAAGTTTGTTTTCGAATGAGTGCCACCCTTTTGCACGAA
Right flanking sequence: Indices 225549 -- 226048
TTGGCTGGCACGTGGCCAAACAAACTCATTCTTCTAAAAGTGGCCCCGCCCCTTCCGTGCCAGCC
TACCTTTGTAAGCGAAACTCTTCGGCAGATAGGAGTTACGAGTGGGACACGATAACGACGTTTCG
GTCCCGTTAAACGAGTCGGGATCCAAGTACCCACTATCCCTCCTTCCTTCGTGCAAACTGATCCG
TGCACCCGTGAACTTCTGCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTT
CCCCTGCGCTCGGCCCTTCTGCACATACCTTTGTAATATAATAATCCGGGCAAGAAACTAACTTT
AGCATCAGGAGTTAGTTCTTCTGAAGAGTGTTATTCGTGCCTTGGGTGTTTGTTGCAAGAAAGAA
CTTCTGCTTCGCTGCGCTCAGAAAGAAACTAACTTCTGCAACCTTTTGGTTTCTTTCTTTCTCTC
TTTCGCTTTCTTTAACTTTCGAACTCTCTTTCTTTCTGGTCCAAA
Found at i:227516 original size:16 final size:16
Alignment explanation
Indices: 227513--227630 Score: 146
Period size: 16 Copynumber: 6.8 Consensus size: 16
227503 TGGAACTTCC
227513 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
227529 CTTCCCTTCCCTTCCCTGGAA
1 C-T----TCCCTTCCCTGGAA
227550 CTTCCCTTCCCTTCCCTGGAA
1 CTT--C---CCTTCCCTGGAA
227571 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
227587 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
227603 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
227619 CTTCCCTTCCCT
1 CTTCCCTTCCCT
227631 TCCCCGGTGC
Statistics
Matches: 92, Mismatches: 0, Indels: 20
0.82 0.00 0.18
Matches are distributed among these distances:
16 58 0.63
17 1 0.01
18 1 0.01
19 1 0.01
20 1 0.01
21 30 0.33
ACGTcount: A:0.10, C:0.47, G:0.10, T:0.33
Consensus pattern (16 bp):
CTTCCCTTCCCTGGAA
Left flanking sequence: Indices 227013 -- 227512
TTCCCCAAACGCACGCACGGGGGAACCCCGGAGGGGAGGGGAGGGGAGGGGAGAACCCCTGCGCC
GCTCAGAAAGCTAGCTCTTTTGTTCACACGGGGCGGGGAAGGGCCTTCCCCCCGGTTTCAGAAGA
GTGGATGGCCAAAAACTCCGGTGGAAAGCAGCCCTTCCCCGGATTGAAAGCGCTTCCAAGGTGGT
TAGTTAGAAGGAGCGCTTTCTCTATATACGTGATTTACCAATACGCCCAGGGAGTCGGGTGGATT
GAAAGCGCTTCCAGGGTGGTTAGAAGTAGCGATTTACCAACTTGCTTGCTTGCCCAGGAGTGAGT
GATTGAAAGCGTGGAGCGCCCACAACTTTGTGCGTGCAGCTTTGTCTTCACCCCGTAGCTAGCAC
GTGCCTCTTCCCCCGTACTCAGAGGAATGAGGTAAGACCGTCCCATACGTCGGGATCCAAGGACC
CACTCTCCCTGCCACCTCGCAGAAGGGCCCTTCCCTGGAACTTCC
Right flanking sequence: Indices 227631 -- 228130
TCCCCGGTGCTCGGAGAACTTACACCCTTCTGCACATACGCAGAAGTTCCTCTGGGGGAAAACCT
GTGCTCGGTCAAGAACTTCCAACCTTCTGCCTGCCACCTCGCAGAAGGCCCCTGCGCTCGGAGAA
CTTCTGCACCTCCTTGGGTAAACGGGGATCCAAACGGGGAGGGATTGCTTGCGATAATTTGAAAC
TAACTCTTTTGGCCGGCCGGCCGGGGATTAAGGGGATCCAAGGAGGGGCCTTTTGGATCCAAGGA
CGGGGCGGGAGAGACACGATAACGAACTCGGATCCCCGACCCAATCAAACCCCGGAACTCTCCCC
CCTTTCGACAGGGGCTAGCCCGGGGTAGGGGGTATGAGGTTGCCATAACCCCGTGCCAGCCTACC
TTTGTAAGCGAAACAACCTGGCACGGCAGGGCAGGAGTTGGGTTCAGTTGTGCCGGAGGAGGCAG
AAGGGTGTTCTTTACCGAGCCAGGAGTTGGGGCTGCGGGGGAAGC
Found at i:227634 original size:21 final size:21
Alignment explanation
Indices: 227495--227582 Score: 176
Period size: 21 Copynumber: 4.2 Consensus size: 21
227485 CGCAGAAGGG
227495 CCCTTCCCTGGAACTTCCCTT
1 CCCTTCCCTGGAACTTCCCTT
227516 CCCTTCCCTGGAACTTCCCTT
1 CCCTTCCCTGGAACTTCCCTT
227537 CCCTTCCCTGGAACTTCCCTT
1 CCCTTCCCTGGAACTTCCCTT
227558 CCCTTCCCTGGAACTTCCCTT
1 CCCTTCCCTGGAACTTCCCTT
227579 CCCT
1 CCCT
227583 GGAACTTCCC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 67 1.00
ACGTcount: A:0.09, C:0.49, G:0.09, T:0.33
Consensus pattern (21 bp):
CCCTTCCCTGGAACTTCCCTT
Left flanking sequence: Indices 226995 -- 227494
CACAAACAAACAAAACTATTCCCCAAACGCACGCACGGGGGAACCCCGGAGGGGAGGGGAGGGGA
GGGGAGAACCCCTGCGCCGCTCAGAAAGCTAGCTCTTTTGTTCACACGGGGCGGGGAAGGGCCTT
CCCCCCGGTTTCAGAAGAGTGGATGGCCAAAAACTCCGGTGGAAAGCAGCCCTTCCCCGGATTGA
AAGCGCTTCCAAGGTGGTTAGTTAGAAGGAGCGCTTTCTCTATATACGTGATTTACCAATACGCC
CAGGGAGTCGGGTGGATTGAAAGCGCTTCCAGGGTGGTTAGAAGTAGCGATTTACCAACTTGCTT
GCTTGCCCAGGAGTGAGTGATTGAAAGCGTGGAGCGCCCACAACTTTGTGCGTGCAGCTTTGTCT
TCACCCCGTAGCTAGCACGTGCCTCTTCCCCCGTACTCAGAGGAATGAGGTAAGACCGTCCCATA
CGTCGGGATCCAAGGACCCACTCTCCCTGCCACCTCGCAGAAGGG
Right flanking sequence: Indices 227583 -- 228082
GGAACTTCCCTTCCCTGGAACTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCCGGTGCTCGGAGA
ACTTACACCCTTCTGCACATACGCAGAAGTTCCTCTGGGGGAAAACCTGTGCTCGGTCAAGAACT
TCCAACCTTCTGCCTGCCACCTCGCAGAAGGCCCCTGCGCTCGGAGAACTTCTGCACCTCCTTGG
GTAAACGGGGATCCAAACGGGGAGGGATTGCTTGCGATAATTTGAAACTAACTCTTTTGGCCGGC
CGGCCGGGGATTAAGGGGATCCAAGGAGGGGCCTTTTGGATCCAAGGACGGGGCGGGAGAGACAC
GATAACGAACTCGGATCCCCGACCCAATCAAACCCCGGAACTCTCCCCCCTTTCGACAGGGGCTA
GCCCGGGGTAGGGGGTATGAGGTTGCCATAACCCCGTGCCAGCCTACCTTTGTAAGCGAAACAAC
CTGGCACGGCAGGGCAGGAGTTGGGTTCAGTTGTGCCGGAGGAGG
Found at i:228271 original size:5 final size:5
Alignment explanation
Indices: 228261--228288 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
228251 CCGAGCACCG
228261 GGGAA GGGAA GGGAA GGGAA GGGAA GGG
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGG
228289 TAACACCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (5 bp):
GGGAA
Left flanking sequence: Indices 227761 -- 228260
CTTCTGCACCTCCTTGGGTAAACGGGGATCCAAACGGGGAGGGATTGCTTGCGATAATTTGAAAC
TAACTCTTTTGGCCGGCCGGCCGGGGATTAAGGGGATCCAAGGAGGGGCCTTTTGGATCCAAGGA
CGGGGCGGGAGAGACACGATAACGAACTCGGATCCCCGACCCAATCAAACCCCGGAACTCTCCCC
CCTTTCGACAGGGGCTAGCCCGGGGTAGGGGGTATGAGGTTGCCATAACCCCGTGCCAGCCTACC
TTTGTAAGCGAAACAACCTGGCACGGCAGGGCAGGAGTTGGGTTCAGTTGTGCCGGAGGAGGCAG
AAGGGTGTTCTTTACCGAGCCAGGAGTTGGGGCTGCGGGGGAAGCAGAAGAACTTCCCACCTCTT
CCCCCCTGCGCTCGGTCAAGGTATGTGCCTTCTGCGTATGTGCCTTGACCGAGCACAGGGGGGAA
GAGGTGGCAGGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCACCG
Right flanking sequence: Indices 228289 -- 228788
TAACACCCTTCTGCGAGGTGGCAGGGAGAGTGGGACAACTTGGATCTCACGACAACTGTTTTGCA
GTAATCCGTGCCGCTTCAAAGTTCCCGCACGGGGGAAAGCTGCGCTCAGAAAGCAAGCAAGCAAG
CAAGCAACTTCTGGTTTTGGAAATCCGTGCCTACCTGCGAGACTTTTCGTGCGTGCAGGGGGCGG
TTGTTTGTTTGCAGGGGCCCCAACCCGTTCCCCCACTTCGTGATAAAGAGTTGTGGCCAGCCAAG
TAGGGATCCAAGGACCGGGTTGACCGGACCTCCAGAAGGTTGGTTGGCTGGTTCTTCGCGTAGCG
AAGTTCTTGTTGGACCAAGAAGCTCAGCTCGCGCGGGTTAAAAGTTGGGTTGGGAACCAGAAGCA
ACCTATCTTGGTTGCAGAAGGGTGTTCTTTACCGAGCGCAGGTTTTCCCCCAGAGGTGGCAGGGT
GTTCTTCGCGCAGCGGAGTTCTTGTTGGACAAGAAGGTTGTTTGG
Found at i:229746 original size:5 final size:5
Alignment explanation
Indices: 229736--229809 Score: 148
Period size: 5 Copynumber: 14.8 Consensus size: 5
229726 GTTTTCGCAG
229736 CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT
1 CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT
229786 CCCCT CCCCT CCCCT CCCCT CCCC
1 CCCCT CCCCT CCCCT CCCCT CCCC
229810 GTGCGGGAAC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 69 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCCCT
Left flanking sequence: Indices 229236 -- 229735
AAGGGCCATTCCCTTCCCCGGTGCTCGGAGAACACCCTTCTGCACATACCTGCCACCTCTTCCCC
CCTGTGCTCGGTCAAGAACACCCTTCTGCCTGCCACCTCTGGGGGAAAACCTGCGCTCGGTCAAG
AACTTCCAACCTTCTGCCTGCCACCTCCCTCTTATATTACTCTGAAGGTTGGTTGTTTGTGGGGA
AAAGTTACCCCTGCGCTCGGAGAACACCCTTCTGCACATACCTCCGGCACAACTGAACCCAACCT
TTTGCAACCCTTCTGCACGCACGAAAAGTTTCGAAGGAAAGTTTTTGCACGAACTTTTGCGTGCG
GGTGTCCTCCCCCAGTCGGGAGAGTGGGTCCTTGGATCCCTCCTTCCTCAAGAGTCGGGATCCAA
GTTGTCCCACAACTGTTTTGCCCAAACAGTTCTGCCCTGCCGAACTTTTTGCCAAGCCAAAAAGT
TGCCGGTTGTTTCGCTTACAAAGAAACCTCTAGAAGTTTTCGCAG
Right flanking sequence: Indices 229810 -- 230309
GTGCGGGAACAGCAAACTTTGTAGGCACGGATTACTGCAGAACAGAATGAGTGCCACGGGAAGGG
CCCTTCCCCAAAGGTGTGCAGAAGGTTGGTTGTTTGAATCTGAGCGCAGCTACGGACCCGAAGAA
GATGCGCAGGGGTTCTCCGGGCGTGCGTTTGAAGGTTCTAACGCTCTTTCAGGTAGGCACGGATG
AGACTGACTTTTGCAGGCTTTCACCGGATAGCAGGTTTAATCCCCTCTCCCTGCCATCCACTCGT
TAAACCCCCCTTTCGGGTTGATCCGGGCCTTCCCCCGTGCCTCTTTATCCCAAAACTGGCTGGCT
GGTAGAAGATCTTTGGTGGCTAGCCCTTTAACAGTGGCCCGTGCCTATTGATACCCGGGTAGGAG
TGGTAAGCCCGAACCCTGTCCCGGCCCCAGAAGAACTTCTGCTCGCTGCGCTCGGAAAACAAACA
ACCTTCTGCACATACCTCATTGGTCAACCGGCAGTGAGCGTAGCC
Found at i:232361 original size:5 final size:5
Alignment explanation
Indices: 232353--232393 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
232343 GCCAAATAAA
*
232353 TAACT TAACT TAACT TAACT CAACT TAACT TAACT TAACT T
1 TAACT TAACT TAACT TAACT TAACT TAACT TAACT TAACT T
232394 GCCAAAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (5 bp):
TAACT
Left flanking sequence: Indices 231853 -- 232352
CATGGCATGGCAAAAAAGCAGAGCAGTTTGCGCTGAATGCTGTTTTTTATATAAATGGAGCTAAA
GCTAGCTTTTAAAAGAAAGGCGACATTAAGATTTGCATTTGTATAGGAATCTTTAAATTTACCAT
CATCTCTTTTGCAGCATCTTTCCAGCGAGTCTTTAAAAGGAGAAACGCCTACCACCTTTCTTTAG
AAACTCCAGCGCGTGTCAGCTGTCCATGTGAATAGATTTAGCGTTAACCTGCTCTATCTTTTCTA
CTTGGCCGCAACTCTTCTCTCTTGCGGTTGCACACGCTCTCTACCTCTGGGCTAGGGGGAAAAAG
ACTGCAGGCTGAAGATTTGCTGAGAGCAAAGCCTAGACTGAGCAGCAGATCGCAAGCTACCTAAA
AATGCGTATTTAGAATTGCTAGACCAGCCGGCAGTAATAATGCCACCCCTAGAGAAGAAACAGCA
AAAATATACAACAAACCGCAGTTTAAATCTGCCCTGCCAAATAAA
Right flanking sequence: Indices 232394 -- 232893
GCCAAAAAAGTTATCAAAAGGGATCACCGCTTCCCCCAGGCCACTTGACTCAATAAAAAAGTCAG
CACCGGCGCAAATAGAAAAATCACCAGATTTGCGCTACTTGGCAGTACGGGTTCCTTCACCAACA
GCTTTAACCCATCTGCTATAGGCTGGAAGATGCCCAAAAAGCAAGCCCACAACTTTTAGGGCGGG
CCTTTTCGTTCCCCCGTTGCATCGAGGCGAGAACTTTTCGCTCCGCTAGAGTTAAAAAGGCTACA
GCAAGCAATAAAAGTTGGGATAGTAATCACAACTTGAAGGGTCAAACAACCCTGAACCTCGGAGG
GGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGAACCCCTGCGCTCGGAACTTC
TGCACATACCTGAACCTCCCTCTTATATTACTCTGAAGGTTGGTTGTTTGTGGGGAAAAGTTACC
CTGCGCTCGGGACTTCTGCACTTCCCTTCACCTCGCTACGCTCGG
Found at i:232724 original size:5 final size:5
Alignment explanation
Indices: 232714--232762 Score: 98
Period size: 5 Copynumber: 9.8 Consensus size: 5
232704 CCTGAACCTC
232714 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
1 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
232763 AACCCCTGCG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGAGG
Left flanking sequence: Indices 232214 -- 232713
ACTGAGCAGCAGATCGCAAGCTACCTAAAAATGCGTATTTAGAATTGCTAGACCAGCCGGCAGTA
ATAATGCCACCCCTAGAGAAGAAACAGCAAAAATATACAACAAACCGCAGTTTAAATCTGCCCTG
CCAAATAAATAACTTAACTTAACTTAACTCAACTTAACTTAACTTAACTTGCCAAAAAAGTTATC
AAAAGGGATCACCGCTTCCCCCAGGCCACTTGACTCAATAAAAAAGTCAGCACCGGCGCAAATAG
AAAAATCACCAGATTTGCGCTACTTGGCAGTACGGGTTCCTTCACCAACAGCTTTAACCCATCTG
CTATAGGCTGGAAGATGCCCAAAAAGCAAGCCCACAACTTTTAGGGCGGGCCTTTTCGTTCCCCC
GTTGCATCGAGGCGAGAACTTTTCGCTCCGCTAGAGTTAAAAAGGCTACAGCAAGCAATAAAAGT
TGGGATAGTAATCACAACTTGAAGGGTCAAACAACCCTGAACCTC
Right flanking sequence: Indices 232763 -- 233262
AACCCCTGCGCTCGGAACTTCTGCACATACCTGAACCTCCCTCTTATATTACTCTGAAGGTTGGT
TGTTTGTGGGGAAAAGTTACCCTGCGCTCGGGACTTCTGCACTTCCCTTCACCTCGCTACGCTCG
GTAAAGGTAAGCAACCCAACCCAACCCAACCTTTTGCCTCGCAGAAGTTACCCTGCGCTCGGAAC
TTCTGCACTTCTGCCTCTGTAATACAGATGCGCTACCCGCGCTCGTGCGCCATCCTGAATTTCGT
AATGGGAATAACCTTTCCTACCTCTGGTTCTCATATCCCAGGCCCCGGACATTCCCGACCGAGAC
CTTCCGGCTTGCCACAGGGAGCTATAAAGTCTCTGGGATAAGTTTCTCAGAGCTCGCAGCGGGAC
TTACTTTTTGGTTCGCTTTGCGAACAAATGGCCCCGCGCGGACGCCTTCGGCGCGCCCTTTCTCT
TCAAAGGGGGTAAGCAAGTTTGGGGGAAAGCGCTATAGCTTTTTC
Found at i:236506 original size:16 final size:16
Alignment explanation
Indices: 236485--236526 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
236475 CAGAAGTTTT
236485 CGCAGCTTTGTATGAG
1 CGCAGCTTTGTATGAG
236501 CGCAGCTTTGTATGAG
1 CGCAGCTTTGTATGAG
*
236517 CGCGGCTTTG
1 CGCAGCTTTG
236527 CTTTGGAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.21, G:0.33, T:0.31
Consensus pattern (16 bp):
CGCAGCTTTGTATGAG
Left flanking sequence: Indices 235985 -- 236484
TTAAAGTGTTCGCCTTCGAAACAACCTTTTCCCCAGCGCTCATCTTCCCCTTAAGTTGTGATGCG
AGCGGGCGTGAAGTGCAGCAGTAGCTTCATGGTGTTCCCCCTTACGAAGCCTGGAAATGAGCGAA
CTCAGAATCCAACTGGGTCGTTCGTTGGATCCGCCCTTGGTTACCTTCCAAAGAGCAGCAGCCAG
CGGAGACCTGTGACTATCAGATTGTCGAAGCTAGATGTCCGCCGATTACTTGACCAGATTTCTTG
ATTGAAACTAACTTTATGGCTGCTTTGGGAGCCGAGATGAATTTGATAGCATGAATAAATTGAGT
CAATCATCTACGTATTTCTCTGCATCTATGAATCTTTTCCGGGTATAAATTCCTGGTCGAGTTAC
CCACTGCAGGAACCTGGAAGGCTAGGACGTGACTCGGGGGGTGCGGATAAAGTTACGGGTTTAGC
CTTTCCCGCCAACGCCAATGGGCACCAAAAGTAAGCAGAAGTTTT
Right flanking sequence: Indices 236527 -- 237026
CTTTGGAGCGCGCCAACTGGTTTGCTGGAAAAAAATGTCTAAAAGATTCCCCTTCCCCAAAGCAG
CCTATTTGAGAGTCGTCCCAAATCTTTGGCACGCGATTCCGAAGCGCTAACTTAGCTTTTTTGCC
GAGGGGGAACGGGTGGTTTTCTGTATAAGCTAACCAGGTTGAGCAGCTTTATTAAACAACTTGTT
AAGTTAAGTTCCCCCATATTTTTTTGGCCCCTCTGTAACTAATGTCCACAGAATCAGCCCGCTAC
ACAAGCCAACGCCCAATACTGCTGTGATCCACTCCTTCTCCGGATTCCAGAAGAGCAATATCGTT
AGCTCGTTCGATACTGAACTAACCCAGCGGGGGCTTGATGGATAGCTATCGGCCAGCCTAGCTTA
CTAAAAGGCGGCGGCACGAGGGGAAGCAGAAGGGTTGTTGGAAGTTCTTTACCGAGCCAGGAGTT
GGGGCTGCGGGGGAAGCAGAAGAACTTCCCACCTCTCCCCCTGCG
Found at i:240794 original size:5 final size:5
Alignment explanation
Indices: 240784--240839 Score: 112
Period size: 5 Copynumber: 11.2 Consensus size: 5
240774 CAGCGGAGAA
240784 CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG
1 CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG CCCGG
240834 CCCGG C
1 CCCGG C
240840 AGAAGGGTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.00, C:0.61, G:0.39, T:0.00
Consensus pattern (5 bp):
CCCGG
Left flanking sequence: Indices 240284 -- 240783
GTTCTGAGCGCAGCGGTGAAGGGGAAGGCGTGCGTGCGTTTGAAGGAACTTCTGCCGAGAACCAA
GCTTCGGGGAGACCGACGAACTACCTCCAACACGGAAGGACTTCCAGAAGGGGGTTGGAACTTCT
GCTTCGCGCAGCCCGAAAAAAAGTTCTTAAAAGTTGGGCAAACCGGCGGGCAAGCAAAAACTTCT
GCTTCGCGCAGGGGTTCTCACTTCAGAGGAATATAAGAGAGGGGAAGAGCAGAAGTTCACACCTT
CTGCGGATTTCCAGAAGGTTTTTGGTTGGTTGGCTGGTTCTTCGCGCAGCTTTCCCCCGTGCCAA
AAGTTCGCACTTGTTGGGCGGGTTGTTTGCAAAAGGTTGTTGGTTGTTTGGAACCAGAAGGTCAA
CCTTTTCCCCTTGGTTGCAGAAGGGTGTTCTTGACCGAGCGCAGGGGTTCTCCCCTCCCCTCCGA
GGAACTTCTGCGGAACCAGAAGGGTGTTCTTCGCGCAGCGGAGAA
Right flanking sequence: Indices 240840 -- 241339
AGAAGGGTGTTCTTGACCGAGCGCAGGGGTTCTCCGAGGAACCTTCTGCGGGCGATCTGGTGCTA
TGCCAGTGCCAGGGCTGCCTTGAAAGAAAAGATTCAAAACCTACGGGATGAAGGGTGTGCCGGGG
GAAGGCCCGCCCTTCATCCCTCTCCCTGCCCTCCGCTTCACCACCCGGATTGCCGGTTCGCTTCG
CTTCACCACCAGGTCTTACCTTTACCGAGCGTTCTCCCCACAAACAACCAACCTTCAGAGTAATA
TAAGAGAGAGGTTCAGGGAAGTGCCTTTACCGAGCGCAGGGGTTCTCCCCACAAACAACCAACCT
TCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTACCGAGCGCAGGGGTTCTCCCCACAA
ACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTACCGAGCGCAGGGTT
TTGAAGAGGTTCAGGGTTGTGAGGGGAGCCCCGCGCTTTTCCCCC
Found at i:241173 original size:76 final size:76
Alignment explanation
Indices: 241065--241292 Score: 456
Period size: 76 Copynumber: 3.0 Consensus size: 76
241055 TTTACCGAGC
241065 GTTCTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTAC
1 GTTCTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTAC
241130 CGAGCGCAGGG
66 CGAGCGCAGGG
241141 GTTCTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTAC
1 GTTCTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTAC
241206 CGAGCGCAGGG
66 CGAGCGCAGGG
241217 GTTCTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTAC
1 GTTCTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTAC
241282 CGAGCGCAGGG
66 CGAGCGCAGGG
241293 TTTTGAAGAG
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 152 1.00
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (76 bp):
GTTCTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTAC
CGAGCGCAGGG
Left flanking sequence: Indices 240565 -- 241064
TTGGTTGGTTGGCTGGTTCTTCGCGCAGCTTTCCCCCGTGCCAAAAGTTCGCACTTGTTGGGCGG
GTTGTTTGCAAAAGGTTGTTGGTTGTTTGGAACCAGAAGGTCAACCTTTTCCCCTTGGTTGCAGA
AGGGTGTTCTTGACCGAGCGCAGGGGTTCTCCCCTCCCCTCCGAGGAACTTCTGCGGAACCAGAA
GGGTGTTCTTCGCGCAGCGGAGAACCCGGCCCGGCCCGGCCCGGCCCGGCCCGGCCCGGCCCGGC
CCGGCCCGGCCCGGCAGAAGGGTGTTCTTGACCGAGCGCAGGGGTTCTCCGAGGAACCTTCTGCG
GGCGATCTGGTGCTATGCCAGTGCCAGGGCTGCCTTGAAAGAAAAGATTCAAAACCTACGGGATG
AAGGGTGTGCCGGGGGAAGGCCCGCCCTTCATCCCTCTCCCTGCCCTCCGCTTCACCACCCGGAT
TGCCGGTTCGCTTCGCTTCACCACCAGGTCTTACCTTTACCGAGC
Right flanking sequence: Indices 241293 -- 241792
TTTTGAAGAGGTTCAGGGTTGTGAGGGGAGCCCCGCGCTTTTCCCCCTTGGCAGGCTCTGGGTGG
GAAATCGCCTGGGAAATTTAATCGCTTCACCACCCGGGGAGGGGAGGGGAGGGGAGGGGAGAAGC
TGGCTGAACCAAAAGGTTGTTGCTGGCTGCAACCGCCGCAGGAAACTTCTGCGAACTTCTCTTTT
TTTTGGACCAAGAAACTTACTTCGCAAGCGTGTTGAAAAGAATCTTCGCGCAGCGAAGCATTACA
AAGGTAGGCACGGATCTTAAGGTTGCCCTCATTCTTCGTGGCCGAAAAGTTTCGAAGAACTGAAG
GCTGGCAAACCACTCATTCGAAGTGGCACGAAGGAGCCGTTGTTGGATCTCCTACGTCGTACAGT
TTGCCAACGTCGCGTTTCACGCCAATGCGTGGCTTTTTAGCCAAACACTAAACCTTGAAAGTCCA
TTGCTAACACGCCGCCCTGGGCACACACTGGGTCGGTCTGGAAAT
Found at i:241403 original size:5 final size:5
Alignment explanation
Indices: 241393--241418 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
241383 TTCACCACCC
241393 GGGGA GGGGA GGGGA GGGGA GGGGA G
1 GGGGA GGGGA GGGGA GGGGA GGGGA G
241419 AAGCTGGCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 240893 -- 241392
GATCTGGTGCTATGCCAGTGCCAGGGCTGCCTTGAAAGAAAAGATTCAAAACCTACGGGATGAAG
GGTGTGCCGGGGGAAGGCCCGCCCTTCATCCCTCTCCCTGCCCTCCGCTTCACCACCCGGATTGC
CGGTTCGCTTCGCTTCACCACCAGGTCTTACCTTTACCGAGCGTTCTCCCCACAAACAACCAACC
TTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTACCGAGCGCAGGGGTTCTCCCCACA
AACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTACCGAGCGCAGGGG
TTCTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGGAAGTGCCTTTACC
GAGCGCAGGGTTTTGAAGAGGTTCAGGGTTGTGAGGGGAGCCCCGCGCTTTTCCCCCTTGGCAGG
CTCTGGGTGGGAAATCGCCTGGGAAATTTAATCGCTTCACCACCC
Right flanking sequence: Indices 241419 -- 241918
AAGCTGGCTGAACCAAAAGGTTGTTGCTGGCTGCAACCGCCGCAGGAAACTTCTGCGAACTTCTC
TTTTTTTTGGACCAAGAAACTTACTTCGCAAGCGTGTTGAAAAGAATCTTCGCGCAGCGAAGCAT
TACAAAGGTAGGCACGGATCTTAAGGTTGCCCTCATTCTTCGTGGCCGAAAAGTTTCGAAGAACT
GAAGGCTGGCAAACCACTCATTCGAAGTGGCACGAAGGAGCCGTTGTTGGATCTCCTACGTCGTA
CAGTTTGCCAACGTCGCGTTTCACGCCAATGCGTGGCTTTTTAGCCAAACACTAAACCTTGAAAG
TCCATTGCTAACACGCCGCCCTGGGCACACACTGGGTCGGTCTGGAAATTATCCATCTCGAGGCT
GTGCTTGGTCCGTGCGAAAGAACTTCTCTGGGAAGTTAGTTTCAATGGGAATGATGCAATGAGCG
ATCTCAGCCTCGAAGGACGGTTCATCTGGTGATATTGGGCTGTCA
Found at i:245258 original size:15 final size:15
Alignment explanation
Indices: 245238--245271 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
245228 TGCGCGGGGG
245238 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
245253 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
245268 GAAG
1 GAAG
245272 CAGAAGTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (15 bp):
GAAGGGGAAGAAGAA
Left flanking sequence: Indices 244738 -- 245237
TCTCGTGGCAAAAGGTTGTTAGTTGGAACAAAAAGTAAGTTCTTACCTTTACCGAGCGCAGGGGA
AGGGCCCACAAACAACCAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGTCTTACCTTTA
CCGAGCGCAGGGGTTCTCCCCTCCCCTCCGAGGTTCAGGGTTGTTTGTTGCAGAAGTTTCTTTCT
TCGCTGCGAAAAACAACCCGCACTCTTTTTTTGTTCACACCTTGGAACAACTGTCTGCTCTGCTC
TGCTCTGCAACCAACTTTCAACAACCCTTCTGCACGGCATTTAAGGTTGTTTCGAGATTACAAAG
GCCCGTTCACTCATTCGAAATTACAAAGGACTTAAAAGGTTGTTGCTATCCGTGCCTACCTGGCA
CGGTAGCTGCGCTCAGAACTTTTGGAGATCCGTCCTTTGGGGAAGGGCCCTTCCCGTGGCACTCA
TTCGGAGCCTCCGTGCCTACCTGAACTTATTCCCCTGCGCGGGGG
Right flanking sequence: Indices 245272 -- 245771
CAGAAGTTCACACAAACAACCCGAAGGTTGTTTGGTTGGCAAAAGGTTGGTTGTTGGGGTTGTTG
GCAAAGGGTTGTTGGTTGTTCCTCTTCCCCTGCGCTCGGAGAACACCCTTCTGCACATACCTTTG
TAAGTAATTTCAGTGGCACAAACAGTTTGCCGCAAAGTTCCCACCGAATGAAAACAGCTTTTGCA
CGAATGTTTAGGCACTCCTTGGGTGGGATCCAAGGCACCCGTTAGGGTGGGACCCGTTAGGGTGG
GATCCAAGGACTTCCCTCTTATATTCCTCTGAAAGGTTCACACAAAAGAAGAGTGCGGGTTGTTT
TTCGCAGCGAAGAAAGAAACTTCTGCAACAACCCAAAAAAAAAGGTTGCCCAACCCAACCGGAAG
AGACTTCTGCCAAAATTTCGCAGAAACCAACTTCTGCCTGCAACACCGCAAACTAACTGCTACCC
TGAACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCA
Found at i:245277 original size:15 final size:15
Alignment explanation
Indices: 245244--245277 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
245234 GGGGGAAGGG
**
245244 GAAGAAGAAGAAGGG
1 GAAGAAGAAGAAGCA
245259 GAAGAAGAAGAAGCA
1 GAAGAAGAAGAAGCA
245274 GAAG
1 GAAG
245278 TTCACACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.41, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAGAAGCA
Left flanking sequence: Indices 244744 -- 245243
GGCAAAAGGTTGTTAGTTGGAACAAAAAGTAAGTTCTTACCTTTACCGAGCGCAGGGGAAGGGCC
CACAAACAACCAACCAACCTTCAGAGTAATATAAGAGAGAGGTTCAGGTCTTACCTTTACCGAGC
GCAGGGGTTCTCCCCTCCCCTCCGAGGTTCAGGGTTGTTTGTTGCAGAAGTTTCTTTCTTCGCTG
CGAAAAACAACCCGCACTCTTTTTTTGTTCACACCTTGGAACAACTGTCTGCTCTGCTCTGCTCT
GCAACCAACTTTCAACAACCCTTCTGCACGGCATTTAAGGTTGTTTCGAGATTACAAAGGCCCGT
TCACTCATTCGAAATTACAAAGGACTTAAAAGGTTGTTGCTATCCGTGCCTACCTGGCACGGTAG
CTGCGCTCAGAACTTTTGGAGATCCGTCCTTTGGGGAAGGGCCCTTCCCGTGGCACTCATTCGGA
GCCTCCGTGCCTACCTGAACTTATTCCCCTGCGCGGGGGGAAGGG
Right flanking sequence: Indices 245278 -- 245777
TTCACACAAACAACCCGAAGGTTGTTTGGTTGGCAAAAGGTTGGTTGTTGGGGTTGTTGGCAAAG
GGTTGTTGGTTGTTCCTCTTCCCCTGCGCTCGGAGAACACCCTTCTGCACATACCTTTGTAAGTA
ATTTCAGTGGCACAAACAGTTTGCCGCAAAGTTCCCACCGAATGAAAACAGCTTTTGCACGAATG
TTTAGGCACTCCTTGGGTGGGATCCAAGGCACCCGTTAGGGTGGGACCCGTTAGGGTGGGATCCA
AGGACTTCCCTCTTATATTCCTCTGAAAGGTTCACACAAAAGAAGAGTGCGGGTTGTTTTTCGCA
GCGAAGAAAGAAACTTCTGCAACAACCCAAAAAAAAAGGTTGCCCAACCCAACCGGAAGAGACTT
CTGCCAAAATTTCGCAGAAACCAACTTCTGCCTGCAACACCGCAAACTAACTGCTACCCTGAACC
TCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACTTCCC
Found at i:245523 original size:15 final size:15
Alignment explanation
Indices: 245503--245533 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
245493 GATCCAAGGC
245503 ACCCGTTAGGGTGGG
1 ACCCGTTAGGGTGGG
245518 ACCCGTTAGGGTGGG
1 ACCCGTTAGGGTGGG
245533 A
1 A
245534 TCCAAGGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.45, T:0.19
Consensus pattern (15 bp):
ACCCGTTAGGGTGGG
Left flanking sequence: Indices 245003 -- 245502
TGCAACCAACTTTCAACAACCCTTCTGCACGGCATTTAAGGTTGTTTCGAGATTACAAAGGCCCG
TTCACTCATTCGAAATTACAAAGGACTTAAAAGGTTGTTGCTATCCGTGCCTACCTGGCACGGTA
GCTGCGCTCAGAACTTTTGGAGATCCGTCCTTTGGGGAAGGGCCCTTCCCGTGGCACTCATTCGG
AGCCTCCGTGCCTACCTGAACTTATTCCCCTGCGCGGGGGGAAGGGGAAGAAGAAGAAGGGGAAG
AAGAAGAAGCAGAAGTTCACACAAACAACCCGAAGGTTGTTTGGTTGGCAAAAGGTTGGTTGTTG
GGGTTGTTGGCAAAGGGTTGTTGGTTGTTCCTCTTCCCCTGCGCTCGGAGAACACCCTTCTGCAC
ATACCTTTGTAAGTAATTTCAGTGGCACAAACAGTTTGCCGCAAAGTTCCCACCGAATGAAAACA
GCTTTTGCACGAATGTTTAGGCACTCCTTGGGTGGGATCCAAGGC
Right flanking sequence: Indices 245534 -- 246033
TCCAAGGACTTCCCTCTTATATTCCTCTGAAAGGTTCACACAAAAGAAGAGTGCGGGTTGTTTTT
CGCAGCGAAGAAAGAAACTTCTGCAACAACCCAAAAAAAAAGGTTGCCCAACCCAACCGGAAGAG
ACTTCTGCCAAAATTTCGCAGAAACCAACTTCTGCCTGCAACACCGCAAACTAACTGCTACCCTG
AACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACTTCCCTGAACCTCGGAGGGGA
GGGGAGAACCCCTGCGCTCGGTAAAGGCACTTCCCTTCACCTCTCTCTTATATTACTCTGAAGGT
TGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAGGTAAGACCTTTTTTTTTGCCTCCA
AAAAAATGCGCAGCGAAGCAGAAGTCTCTTCTGCTGCTTCCAAAAGTTCTGAGCGCAGCGAAGAA
AGAAACTTCTGCAACAACCCAAAAAGGTTGCCCAACCCAACCGGA
Found at i:245836 original size:51 final size:51
Alignment explanation
Indices: 245724--245829 Score: 212
Period size: 51 Copynumber: 2.1 Consensus size: 51
245714 CTAACTGCTA
245724 CCCTGAACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACTT
1 CCCTGAACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACTT
245775 CCCTGAACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACTT
1 CCCTGAACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACTT
245826 CCCT
1 CCCT
245830 TCACCTCTCT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.21, C:0.31, G:0.34, T:0.14
Consensus pattern (51 bp):
CCCTGAACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACTT
Left flanking sequence: Indices 245224 -- 245723
CCCCTGCGCGGGGGGAAGGGGAAGAAGAAGAAGGGGAAGAAGAAGAAGCAGAAGTTCACACAAAC
AACCCGAAGGTTGTTTGGTTGGCAAAAGGTTGGTTGTTGGGGTTGTTGGCAAAGGGTTGTTGGTT
GTTCCTCTTCCCCTGCGCTCGGAGAACACCCTTCTGCACATACCTTTGTAAGTAATTTCAGTGGC
ACAAACAGTTTGCCGCAAAGTTCCCACCGAATGAAAACAGCTTTTGCACGAATGTTTAGGCACTC
CTTGGGTGGGATCCAAGGCACCCGTTAGGGTGGGACCCGTTAGGGTGGGATCCAAGGACTTCCCT
CTTATATTCCTCTGAAAGGTTCACACAAAAGAAGAGTGCGGGTTGTTTTTCGCAGCGAAGAAAGA
AACTTCTGCAACAACCCAAAAAAAAAGGTTGCCCAACCCAACCGGAAGAGACTTCTGCCAAAATT
TCGCAGAAACCAACTTCTGCCTGCAACACCGCAAACTAACTGCTA
Right flanking sequence: Indices 245830 -- 246329
TCACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGG
TAAAGGTAAGACCTTTTTTTTTGCCTCCAAAAAAATGCGCAGCGAAGCAGAAGTCTCTTCTGCTG
CTTCCAAAAGTTCTGAGCGCAGCGAAGAAAGAAACTTCTGCAACAACCCAAAAAGGTTGCCCAAC
CCAACCGGAAGAGACTTCTGCCGGTTTCGCAGCGAAGAAAGAAACTTCTGCAACAAACAACCCAA
AAAGGTTGCCGGAAGAGACTTCTGCCGGTTTCGCAGCGAAGCGAAGGGAGTGCCGGGGGAAGTCC
TTGGATCCCACCCGTGCCGGGGGAAGACACCCGACCGTAAAAGCCCACTCGGTGAAGGGGAAGAA
TACCGGATACCTTGATTTGGATACCTTTACTTGGATCCCACCCGGTTATCAAGGGTGGGATCCAA
GGACCCGTAAGGGACACTCGACCGTCAAGGGGGAACCACTCTCCC
Found at i:249348 original size:5 final size:5
Alignment explanation
Indices: 249338--249373 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
249328 CAGCCAGCTT
249338 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
249374 GGAGAAACCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 248838 -- 249337
TTCATTCGAATGAGTGCGGGGGTTCCAGAGGTGGCAGGAGGTTGTTTGGAAGTTCTTGACCGAGC
CAGGAGTTGGGGCTGCGAGAACACCCAACCCTTCTGCGCAGAAGGGTTGTTGGAAGTTCTTTACC
GAGCACCGGGGTTTTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGAGAGCAGAAGTTCT
TTTCCCGCAGAAGTTCCTCGGAGAACCCCTGCGCTCGGTCAAGAACACCCTTCTGCCTGCTACGA
GTGGGACAACTTGGATCCCGACTTTTTGCTTTCATTCGTGCCACTGGGCCACTTTAGAAGAATGA
GGGCCTGCCTTTTATTCGTGCCTTCGCTTCGCTGCGAGATTTTGGCAGAAGTTCGCACGCACAAA
CAAACAACACGCTTGCGAAGTAAGTTTCTTGGCCCAAAAAAAAGGTTGCAGAAGTTCGCAGAAGT
TTCCTGCGGTTGCAGCCAGCAACAACCTTCTGGTTCAGCCAGCTT
Right flanking sequence: Indices 249374 -- 249873
GGAGAAACCCTGCCACCTCGCAGGGGAGAAGGCCCTTCCCCTGCGCTCGGTAAAGAACTTCCAAC
CTTCTGCGTTGGCAGAAGTCCTTTCCCCGCTGCGGAAACAACAAACAACCAAAAAAGGGGGGCTC
TTCTGCTTTCAAACAACCAACCTTCTGCCTGCTTTTTGGCTGGCACGGGGTTTAGAAGTGAACCC
GCACGCCTTCCCCCGCTGCGCAGAAGTTTCAACCAACCCGCAGAAGTTGCACTCTTTTTTTGTTC
ACACCCAAAAGTTGTGGGGAAAAGGTTGGTTGAAACCTCTGCCCCCGTGCCTACCTTAACGGGGG
AAAGCTGCGCTCAGAGCTAGCTTTTATCCGCAGAAGGGTTGTTTGTGTGAACTTCTGCGTAGCTG
CGCGAAGCAACCAGAAGGGTTGTTCCCGCTGCACACAAACAACCCTTCTTGGTCCTTTGTAAGCG
AAACTTCTCGTGCAAAAGTCAGTCTCATCCGTGCCGAAACGCCAC
Found at i:250154 original size:4 final size:4
Alignment explanation
Indices: 250145--250252 Score: 216
Period size: 4 Copynumber: 27.0 Consensus size: 4
250135 AGAACCTTCT
250145 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
250193 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
250241 GCAA GCAA GCAA
1 GCAA GCAA GCAA
250253 AAAGTTGCGT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 104 1.00
ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00
Consensus pattern (4 bp):
GCAA
Left flanking sequence: Indices 249645 -- 250144
TTGTGGGGAAAAGGTTGGTTGAAACCTCTGCCCCCGTGCCTACCTTAACGGGGGAAAGCTGCGCT
CAGAGCTAGCTTTTATCCGCAGAAGGGTTGTTTGTGTGAACTTCTGCGTAGCTGCGCGAAGCAAC
CAGAAGGGTTGTTCCCGCTGCACACAAACAACCCTTCTTGGTCCTTTGTAAGCGAAACTTCTCGT
GCAAAAGTCAGTCTCATCCGTGCCGAAACGCCACGGTTGGGGGAAGGCCCTTCCCCAAACAAAGG
TGTGAACAAAAGCGCTTTCTGAGCGCAGCTACCAGGGGAATACCTCCAAAAAAGCTATCTTCGCG
CAGCTACCGTGCCAGGCACGGCACGGGGCCTTCTGCAAGCAAGCAACAAACAACCCGCCCGGCCC
TGCAAGCAAGCAAGAAGTTTGTCGCTTACAAAGAAACCAAAAGAGCTTGCTTGCTTTCTGAGCGC
AGCTACCGTGCCAGGCACGGCACGGGGGAGGGGAAAGAACCTTCT
Right flanking sequence: Indices 250253 -- 250752
AAAGTTGCGTTGCCGAAAAGTTAGTTTCTTGCCACACGTTCACAAAGGACCTCCAGAAGGTTGGC
TGGTTCTTCGCGCAGGGGAATAAGTTCAGGTAGGCACGGGGGAAAAACAACAACCCGCCCGTTAA
AATTCGACTGCAAGGTAGGCACGGATAGCAACAAACAACCGGTTCACGCCCGGAGAACCCCTGCG
CATTCATTCAGTTTTCGAAACAACCAGAAAGTATTCCAGTTCGGCCCAAAAAGTTACAAAGGTAG
GCTGGCACGAGGGCCTTGGATTCGTGGCCAAACAAACTCATTCTTCGAAACAACCGCCAGGCCAG
GCCACTCTTATCACGTTCACAAAGGTAGGCTGGCACGGGGGCAGAAGTTTGCCACGCCGGGTTAA
AAGTTTGTTGCCGAACTCTTTGCCAAGCCAAAAAGTCCCGGTTGTTTCGCTTACAAAGGTAGGCT
TGCACGGATGTGCCGCAGCCAAACAGTTGTTGCCCTCATTCAAAC
Found at i:252545 original size:25 final size:25
Alignment explanation
Indices: 252513--252605 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 25
252503 CTTGACCGAG
252513 CGCAGGGGAAGAGAACTTCTGCCAA
1 CGCAGGGGAAGAGAACTTCTGCCAA
* * *
252538 CGCAGGGGAAAAGGTTGGAAGTTCTTGACCGAG
1 CGCAGGGG--AA-G--AGAACTTC-TG-CC-AA
*
252571 CACAGGGGAAGAGAACTTCTGCCAA
1 CGCAGGGGAAGAGAACTTCTGCCAA
252596 CGCAGGGGAA
1 CGCAGGGGAA
252606 AAGGTTGGAA
Statistics
Matches: 52, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
25 18 0.35
26 2 0.04
27 4 0.08
28 7 0.13
30 7 0.13
31 4 0.08
32 2 0.04
33 8 0.15
ACGTcount: A:0.31, C:0.20, G:0.35, T:0.13
Consensus pattern (25 bp):
CGCAGGGGAAGAGAACTTCTGCCAA
Left flanking sequence: Indices 252013 -- 252512
TGAGTTAACTGCAAGGGGTAGGGCGGGTAGAGGCAGGTTATGTTATTCAAGAGTTTGGGGGTAGG
AGGGAGGGTGGGACAACTTGGATCCCGGCTTTTGCGTGCGTGCGTGCGAAAAGTGGCTTTCTAGG
CTCGAAAGCCTAGGTTCAGTCCAATGAGGGCCCCGTGCCTCTTGATACCCTCTCCCGGCAGCGTC
GAGTGGTTCCCCCGTGTCCCGGGGTTTTATCCAAGGAGGGGTATTAAGGGGTCCTATAGGACCCC
TTAATACCACTATGACTCTGAAAAAAGGGGTCGGTAGGCCGGCCTCAACGGTTTAATCCACTCGT
TCCCCCGGCCGAGGGAACGTCTCGGTTGTGAGGTTTAAGACTTTCAAAACCTCGGCCCTCCCTTC
GCTTCGCTGCGAGATTTTTGCAGAAGTTCTTCTGCTTCTTCTGCAACACCGCACCTTTTTCGGAT
CTCCAAAAAAAAAGGGTTGCAGAAGGTTGGAAGTTCTTGACCGAG
Right flanking sequence: Indices 252606 -- 253105
AAGGTTGGAAGTTCTTGACCGAGCACCGCGAGGTTGAGGGAGAAGAGCTTTTCCTTCCCCCGCTG
CGCGAAGCAACCTTCTGCGCACAAACTTTCTTGGTTCCAAGAAACTTCTGCTTTTTTTTGGGGAA
GACCTCGGGTAATGCGCCCTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCACTCCAAAAGG
ATCAAGAAGGTTGAATCTTCGCGCAGCGGGGGAAGGAAAAGAACTTCTGCTTTCAAACAACCTTC
TGCCAAGAAGGGCGGTTGAATCTTCGCGCAGGGGAAGAAGTGTTTAAAGTGTGCAGAAGAGGCTT
CTGCTTCGCGCAGAAACCAGAACAGAAGTGTGTTTCAACCAACCTTCTGCACACTTTAAAGAAAG
CAAGCAAGTATTCCACTCCAAAAGGACCAAGTTTTAAGGTGTGAACTTCTGCTTCGCGTAGCGAA
GTGTTTAAAGTGTGCAGAAGAGACTTCTGCTTCGCGCAGCGGGTT
Found at i:252560 original size:58 final size:58
Alignment explanation
Indices: 252490--252631 Score: 275
Period size: 58 Copynumber: 2.4 Consensus size: 58
252480 AGGGTTGCAG
*
252490 AAGGTTGGAAGTTCTTGACCGAGCGCAGGGGAAGAGAACTTCTGCCAACGCAGGGGAA
1 AAGGTTGGAAGTTCTTGACCGAGCACAGGGGAAGAGAACTTCTGCCAACGCAGGGGAA
252548 AAGGTTGGAAGTTCTTGACCGAGCACAGGGGAAGAGAACTTCTGCCAACGCAGGGGAA
1 AAGGTTGGAAGTTCTTGACCGAGCACAGGGGAAGAGAACTTCTGCCAACGCAGGGGAA
252606 AAGGTTGGAAGTTCTTGACCGAGCAC
1 AAGGTTGGAAGTTCTTGACCGAGCAC
252632 CGCGAGGTTG
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.30, C:0.19, G:0.35, T:0.17
Consensus pattern (58 bp):
AAGGTTGGAAGTTCTTGACCGAGCACAGGGGAAGAGAACTTCTGCCAACGCAGGGGAA
Left flanking sequence: Indices 251990 -- 252489
TGAGCGAAGACAAAGATTTTGTTTGAGTTAACTGCAAGGGGTAGGGCGGGTAGAGGCAGGTTATG
TTATTCAAGAGTTTGGGGGTAGGAGGGAGGGTGGGACAACTTGGATCCCGGCTTTTGCGTGCGTG
CGTGCGAAAAGTGGCTTTCTAGGCTCGAAAGCCTAGGTTCAGTCCAATGAGGGCCCCGTGCCTCT
TGATACCCTCTCCCGGCAGCGTCGAGTGGTTCCCCCGTGTCCCGGGGTTTTATCCAAGGAGGGGT
ATTAAGGGGTCCTATAGGACCCCTTAATACCACTATGACTCTGAAAAAAGGGGTCGGTAGGCCGG
CCTCAACGGTTTAATCCACTCGTTCCCCCGGCCGAGGGAACGTCTCGGTTGTGAGGTTTAAGACT
TTCAAAACCTCGGCCCTCCCTTCGCTTCGCTGCGAGATTTTTGCAGAAGTTCTTCTGCTTCTTCT
GCAACACCGCACCTTTTTCGGATCTCCAAAAAAAAAGGGTTGCAG
Right flanking sequence: Indices 252632 -- 253131
CGCGAGGTTGAGGGAGAAGAGCTTTTCCTTCCCCCGCTGCGCGAAGCAACCTTCTGCGCACAAAC
TTTCTTGGTTCCAAGAAACTTCTGCTTTTTTTTGGGGAAGACCTCGGGTAATGCGCCCTTCTGCA
CACTTTAAAGAAAGCAAGCAAGTATTCCACTCCAAAAGGATCAAGAAGGTTGAATCTTCGCGCAG
CGGGGGAAGGAAAAGAACTTCTGCTTTCAAACAACCTTCTGCCAAGAAGGGCGGTTGAATCTTCG
CGCAGGGGAAGAAGTGTTTAAAGTGTGCAGAAGAGGCTTCTGCTTCGCGCAGAAACCAGAACAGA
AGTGTGTTTCAACCAACCTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCACTCCAAAAGGA
CCAAGTTTTAAGGTGTGAACTTCTGCTTCGCGTAGCGAAGTGTTTAAAGTGTGCAGAAGAGACTT
CTGCTTCGCGCAGCGGGTTCCAGAGGTAGCAGGCATGTGCAGAAG
Found at i:252577 original size:33 final size:33
Alignment explanation
Indices: 252540--252631 Score: 92
Period size: 33 Copynumber: 3.0 Consensus size: 33
252530 TCTGCCAACG
252540 CAGGGGAAAAGGTTGGAAGTTCTTGACCGAGCA
1 CAGGGGAAAAGGTTGGAAGTTCTTGACCGAGCA
* * * *
252573 CAGGGG--AA-G--AGAACTTC-TG-CC-AACG
1 CAGGGGAAAAGGTTGGAAGTTCTTGACCGAGCA
252598 CAGGGGAAAAGGTTGGAAGTTCTTGACCGAGCA
1 CAGGGGAAAAGGTTGGAAGTTCTTGACCGAGCA
252631 C
1 C
252632 CGCGAGGTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 16
0.64 0.12 0.24
Matches are distributed among these distances:
25 8 0.19
26 2 0.05
27 4 0.09
28 7 0.16
30 7 0.16
31 4 0.09
32 2 0.05
33 9 0.21
ACGTcount: A:0.30, C:0.18, G:0.35, T:0.16
Consensus pattern (33 bp):
CAGGGGAAAAGGTTGGAAGTTCTTGACCGAGCA
Left flanking sequence: Indices 252040 -- 252539
TAGAGGCAGGTTATGTTATTCAAGAGTTTGGGGGTAGGAGGGAGGGTGGGACAACTTGGATCCCG
GCTTTTGCGTGCGTGCGTGCGAAAAGTGGCTTTCTAGGCTCGAAAGCCTAGGTTCAGTCCAATGA
GGGCCCCGTGCCTCTTGATACCCTCTCCCGGCAGCGTCGAGTGGTTCCCCCGTGTCCCGGGGTTT
TATCCAAGGAGGGGTATTAAGGGGTCCTATAGGACCCCTTAATACCACTATGACTCTGAAAAAAG
GGGTCGGTAGGCCGGCCTCAACGGTTTAATCCACTCGTTCCCCCGGCCGAGGGAACGTCTCGGTT
GTGAGGTTTAAGACTTTCAAAACCTCGGCCCTCCCTTCGCTTCGCTGCGAGATTTTTGCAGAAGT
TCTTCTGCTTCTTCTGCAACACCGCACCTTTTTCGGATCTCCAAAAAAAAAGGGTTGCAGAAGGT
TGGAAGTTCTTGACCGAGCGCAGGGGAAGAGAACTTCTGCCAACG
Right flanking sequence: Indices 252632 -- 253131
CGCGAGGTTGAGGGAGAAGAGCTTTTCCTTCCCCCGCTGCGCGAAGCAACCTTCTGCGCACAAAC
TTTCTTGGTTCCAAGAAACTTCTGCTTTTTTTTGGGGAAGACCTCGGGTAATGCGCCCTTCTGCA
CACTTTAAAGAAAGCAAGCAAGTATTCCACTCCAAAAGGATCAAGAAGGTTGAATCTTCGCGCAG
CGGGGGAAGGAAAAGAACTTCTGCTTTCAAACAACCTTCTGCCAAGAAGGGCGGTTGAATCTTCG
CGCAGGGGAAGAAGTGTTTAAAGTGTGCAGAAGAGGCTTCTGCTTCGCGCAGAAACCAGAACAGA
AGTGTGTTTCAACCAACCTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCACTCCAAAAGGA
CCAAGTTTTAAGGTGTGAACTTCTGCTTCGCGTAGCGAAGTGTTTAAAGTGTGCAGAAGAGACTT
CTGCTTCGCGCAGCGGGTTCCAGAGGTAGCAGGCATGTGCAGAAG
Found at i:253499 original size:25 final size:25
Alignment explanation
Indices: 253427--253516 Score: 94
Period size: 25 Copynumber: 3.5 Consensus size: 25
253417 CCTTGGATAA
* *
253427 GGTGGGATCCAAGGCACCCGTTA-G
1 GGTGGGATCCAAGGGACCCGGTACG
*
253451 GGTGGGATCCAA-GGACTTCCCCCGGCACG
1 GGTGGGATCCAAGGGA-----CCCGGTACG
253480 GGTGGGATCCAAGGGACCCGGTACG
1 GGTGGGATCCAAGGGACCCGGTACG
253505 GGTGGGATCCAA
1 GGTGGGATCCAA
253517 ATCAAGGGAA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
23 2 0.04
24 12 0.22
25 20 0.36
28 5 0.09
29 13 0.24
30 3 0.05
ACGTcount: A:0.20, C:0.27, G:0.39, T:0.14
Consensus pattern (25 bp):
GGTGGGATCCAAGGGACCCGGTACG
Left flanking sequence: Indices 252927 -- 253426
GCTTCTGCTTCGCGCAGAAACCAGAACAGAAGTGTGTTTCAACCAACCTTCTGCACACTTTAAAG
AAAGCAAGCAAGTATTCCACTCCAAAAGGACCAAGTTTTAAGGTGTGAACTTCTGCTTCGCGTAG
CGAAGTGTTTAAAGTGTGCAGAAGAGACTTCTGCTTCGCGCAGCGGGTTCCAGAGGTAGCAGGCA
TGTGCAGAAGTTCTCCAAGCGCAGGGGAAGAGAACTTCTGCGGGACGAAAAAGCTGGCAGGGCAG
CAAAAAAAAAGCAGAAGTCTCTTTTTTTTGGACCAGAAAGGGTTGTAGGTTGGGAAGAGCTTCGC
GCAGCGGGGAAAAGCAAGCTCTTTTTGGAAATCCGTCCTACCTACCGTGCAATCTGAGCGCAGCG
AAGCGAAGGGAGTGCCGGCAACTTAAATTCGTGCAAACTCTTTAAAGTTGCTAATTCGGGCCACT
TCTTTCTTAAAGTGGCCCTCATCCTTCGTGGCACTCCTTGGATAA
Right flanking sequence: Indices 253517 -- 254016
ATCAAGGGAATCCAAGGACCCGCCTCCTCAGAGGAATAGAAGGGGGGGGAAGACAACCGGATCCC
TTATCCAAGGAGTGCCAGAAGGTTGGTTTCCGTGCCTACCTTTGTAAGTTTCGAAACAATTAAAG
GGGCACGGCAGAAGTTTGTTTGTTGCAGAGCAGAGCTTTTTGGTTCCAAGGGCCAAGAAGGGTTG
ACCGGACCGGTTGGTTGGCTGGTTCTTCGCGTAGGACTTATGCCTGCTTAAAAGTTGGCAAACCT
TCGTGTTGAATCTGAGCGCAGGGGAATAAGTTCAGGTGTGCAGAAGTTTGTTGCTTGCAGAAGGG
GCCCCGTTGCCGTGCAAAGTTCGGTAGCTGCGCTCAGATTCAAACAACCTTCTGCACACCTTTGT
AAGCGAAACGCCACCCCACCCCAAAGGTGTGAACAAAAGCGCTTTCTGAGCGCAGGGGTTCTCCC
CTCCCCTCCCCTCCCCTCCCCCGTGCGGGGGAAGAAGGAGAACCG
Found at i:253977 original size:5 final size:5
Alignment explanation
Indices: 253967--253992 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
253957 CGCAGGGGTT
253967 CTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC C
253993 CGTGCGGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 253467 -- 253966
TTCCCCCGGCACGGGTGGGATCCAAGGGACCCGGTACGGGTGGGATCCAAATCAAGGGAATCCAA
GGACCCGCCTCCTCAGAGGAATAGAAGGGGGGGGAAGACAACCGGATCCCTTATCCAAGGAGTGC
CAGAAGGTTGGTTTCCGTGCCTACCTTTGTAAGTTTCGAAACAATTAAAGGGGCACGGCAGAAGT
TTGTTTGTTGCAGAGCAGAGCTTTTTGGTTCCAAGGGCCAAGAAGGGTTGACCGGACCGGTTGGT
TGGCTGGTTCTTCGCGTAGGACTTATGCCTGCTTAAAAGTTGGCAAACCTTCGTGTTGAATCTGA
GCGCAGGGGAATAAGTTCAGGTGTGCAGAAGTTTGTTGCTTGCAGAAGGGGCCCCGTTGCCGTGC
AAAGTTCGGTAGCTGCGCTCAGATTCAAACAACCTTCTGCACACCTTTGTAAGCGAAACGCCACC
CCACCCCAAAGGTGTGAACAAAAGCGCTTTCTGAGCGCAGGGGTT
Right flanking sequence: Indices 253993 -- 254492
CGTGCGGGGGAAGAAGGAGAACCGGTTTGACGGATTTCAAAAGCAGAAGAAACTTCTGCTTCGCA
GCTACCGAACTTTGCACGGCAACTTTTACGGAGAACCTTCTGCAAGCAACAAACTCCTTCCCTGC
CCCTTTAAGGTTGTTTCGAAAACTGTGGCAACAACTTTAAGGTTGGTTGAAACTTCTGCCCCCGT
GCCTACCTTTGTAATCTCGTGGCACTCATTTGAAGGCCGTGCCAGGTTGTTTCGCTTACAAAGGA
CGGATTTCAACTTGCAACTTCTTAAGTGGAGAGTGCCGGTTTCGCAGCGAAGCAGAAGTTCACAC
AAACAACCCTTCTGCCAAGGAACTTCTGCGGGTTGGCGGCAAGAAGGGTTGGGTTGTTCTGAGCG
CAGCGAAGTGAAGGCACGGCAACTTTTACGGAAACCTTCTGGCACTCCTTGGATAAGGGATCCCC
CGGAGAACTATTCCTCTGAGGAGGCGGGTCCTTGGATCCCCTGTC
Found at i:256982 original size:5 final size:5
Alignment explanation
Indices: 256973--257003 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
256963 AAAAAAGTTG
*
256973 CTCCC TTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
257004 GGAGAACCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.77, G:0.00, T:0.23
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 256473 -- 256972
CAAAGTCTGGTCAAAAGCAGCCTCTCCCATTCGTAGTGGCACGAATCTTAGGGCGGGGGGGATCC
AAGGAGGGGGACGGGGGCCCCTCCTGGCAAGGGGCCCTGGGCCTTCGTGCCACTATGTGGCCCTC
ATACCCTGGCACGGCAGTGCCCAGAAGGTTGGTTGTTTGAATGAGGGCGCAGAAGGTTTGCAATA
ATTCGTGCCACGGACAGATTTCAACAACTTCTTAAGTGTTCTGAGCGTAGCGAAGCGAAGGCACG
GATAGCAACTTCTGACGGCACTTTTGCGGGAATGAGGGCCACGAAGAATGAGGGGGTTCCAGAGG
TGGCAGGAGTTCTTTACCGAGCGCAGGGGAAGAGAACTTCTGCCAACGCAGGGGAAAAGGTTGGA
AGTTCTTGACCGAGCGCAGGGTAACTTAATTCCCCACTTCAGAGGGATATAAGAGGTAGGTGGCA
GGGGACGGCCGGGAACTCTTTGCAGCCAGCACAAAAAAAAAGTTG
Right flanking sequence: Indices 257004 -- 257503
GGAGAACCCAACCTTTTGCCTCGCAGGGGAGAAGGCCCTTCCCCTGCGCTCGGTAAAGAACTCCT
GCCACCTCTGGGGGAATACCTGCGCTCGGTCAAGAACTAACTCCTGCCTGCCTTTTTTTTGGACC
AAGAAAGGTTGGTTGTTTGTGCGAACTTCTGCCAAAATCTCGCAGCGAAGCAGAAGTTCTTGCCA
CAAAAAAGAGTGCAACTTCTGCGGGTTGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGCGGG
AAGGCAACAACTTAAGTTGTTGAGTTCTTTTTGGGCAGAGGTTTGGTTGGCCGGATAAAAAAAAG
TTGCCGTGCCTTCACTTCGCTGCGCGAAGCAACAACACCCAGAAGGGCTGGGTTGTTCCCGCTGC
ACACAAACAACCCTTCTTGGCCCTTTGTAACTTCGAAACAACCTTAAAGGTTGTTCGGCCACCCC
TCTTGGGGGAAGGCCCTTCCCCAAAGGCATAAACGGTTTTATCCG
Found at i:258259 original size:40 final size:40
Alignment explanation
Indices: 258212--258300 Score: 169
Period size: 40 Copynumber: 2.2 Consensus size: 40
258202 CGAGCGTAGC
258212 GAGGAACTTTGGAAGTGCAGAAGTCCCGAGCGCAGGGGAA
1 GAGGAACTTTGGAAGTGCAGAAGTCCCGAGCGCAGGGGAA
*
258252 GAGGAACTTTTGAAGTGCAGAAGTCCCGAGCGCAGGGGAA
1 GAGGAACTTTGGAAGTGCAGAAGTCCCGAGCGCAGGGGAA
258292 GAGGAACTT
1 GAGGAACTT
258301 CTGCGTCTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.30, C:0.17, G:0.38, T:0.15
Consensus pattern (40 bp):
GAGGAACTTTGGAAGTGCAGAAGTCCCGAGCGCAGGGGAA
Left flanking sequence: Indices 257712 -- 258211
GGCGGGGTTCTTCGCGCAGCGAAGTGAAGGCATGGCACGGGGCCTTCTGCAAGCAACTTCTGCAC
ACCTTGGAACCAAAAAGCTCTGCTCTGCAACCCTTCTGCACAAAAAGTTTCGAAGACTGTGGCTA
AACGAACAACCGTTGCCGTGAACCTTCGCAAGCAACCTTTTGCCCGCTGCGCGAAGCAAAGGAAA
TCCGTCCGGGCCTTCCCCCAAGAAAAGAAGTGGCACACCTTGCCTTTTGCACTCATTCGCTTACA
AAGGCACGGCTTTTATCCGGCAACCCGTTGCCGTGCCTTTGTAATCTCGTGGCACACCTTCACTT
CGCTGCGCTCAGAACTTTTGGAAATCCGTCCTTGGATCCAACTTCTGCCGTGCCGAACAATCCTT
TAAGGTTGTTTCGAAACTTACAAAGGACCAATAAATCAGGTATGTGCCTTTACCGAGCGCAGGCC
CTTTTCCCCTGCGAGTTTTGGTTGCTTACCTTTACCGAGCGTAGC
Right flanking sequence: Indices 258301 -- 258800
CTGCGTCTTACCTTTACCGAGCGTAGCGAGGAACTTTGGAAGTGCAGAAGTCCCGAGCGCAGGGG
AAGAGGTGAAGGGTTGTTTGCTTGCGTGAAACTTCTGCTTCGCGCGGGAAAGCGAAGAACTTCTG
CTTTCAAACAACCTTCTGCCAACTTCTGCGGGCGGGGGTTGGTAACTTCTGCTTCGCGCAGAAAC
TTCTGCTTGTTGGACCAAGAAGGGTTGACCGGACCGGTTGGTTGGCTGGTTCTTCGCGTAGGACT
TATGCCTGCTTAAAAGTTGGCAAACCTTCGTGTTGAATCTGAGCGCAGCGAAGAACTTCTGCGGA
TTTCAAAAAAAGAGTGCCGGTTTCGCAGCGAAGAACACCCTTTAAGGTAGGCACGGATTTAAAGG
AAATCCGTCCTACAAAAAAATCTGAGCGCAGAAACCAACCCAACCACCTTCTGCACACTTTTTTT
TTTTTGGAGAAGTTAGTTTCTTCTGCAAAGCAAAGAAGTTCTTCT
Found at i:258919 original size:5 final size:5
Alignment explanation
Indices: 258909--258965 Score: 114
Period size: 5 Copynumber: 11.4 Consensus size: 5
258899 CAGGGGTTCT
258909 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC
258959 CCTCC CC
1 CCTCC CC
258966 GGGGAAGAGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 258409 -- 258908
GCGGGAAAGCGAAGAACTTCTGCTTTCAAACAACCTTCTGCCAACTTCTGCGGGCGGGGGTTGGT
AACTTCTGCTTCGCGCAGAAACTTCTGCTTGTTGGACCAAGAAGGGTTGACCGGACCGGTTGGTT
GGCTGGTTCTTCGCGTAGGACTTATGCCTGCTTAAAAGTTGGCAAACCTTCGTGTTGAATCTGAG
CGCAGCGAAGAACTTCTGCGGATTTCAAAAAAAGAGTGCCGGTTTCGCAGCGAAGAACACCCTTT
AAGGTAGGCACGGATTTAAAGGAAATCCGTCCTACAAAAAAATCTGAGCGCAGAAACCAACCCAA
CCACCTTCTGCACACTTTTTTTTTTTTGGAGAAGTTAGTTTCTTCTGCAAAGCAAAGAAGTTCTT
CTGCTTCACGCAGCAGAAGATCTCTGCCCAAACAATTATTCTGCACACTTTAAAGAAAGCAAGCA
AGTATTCCACTCCGAAAGCAGACTTCTGCTTCGCGCAGGGGTTCT
Right flanking sequence: Indices 258966 -- 259465
GGGGAAGAGAAACTTCTGCTTTCAAACAACCAACCAAACAAACAACCAACCAAACACACCAACCA
ACAACCTTCTACGTCCAAAAAGCAAGCAAGCTCTTCCCCCTTTTTTTAGGAAATCCGTCCCCTTC
TGTCAAAATTTCGCAGCGAGGCATAAGTTCTTGCAACAAACAAACAAACTTCTGCCGAACAGTCA
GTTCGAAAACTGAAACTTACTTTTCGGCCACTTTAAAAATGGCACACCTTGGATAAGGCACGAAG
AACCTTCTGCAAGCAAGCAACAAACAACCTTCTGCACGAAAAGTTTCGCTTACAAAGGTAGGCAC
GGATCCCCAGGCACTCAGAGGGTTAACCAATGAGTGCCACTTCTTGGGGCCCTTCCCCAAAGGTA
GGCACGGATGTTTAGGTCCTTCGTGCCACTACGAATGAGTGCAAAAAAGCAGGCGGATCCAAGGA
GTGGGACAACTTGGATCCCTACTTTGTCAGTTTGTGGCACGAATA
Found at i:259005 original size:12 final size:12
Alignment explanation
Indices: 258996--259036 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
258986 TTCAAACAAC
*
258996 CAACCAAACAAA
1 CAACCAACCAAA
259008 CAACCAACCAAA
1 CAACCAACCAAA
259020 CACACCAACC-AA
1 CA-ACCAACCAAA
259032 CAACC
1 CAACC
259037 TTCTACGTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 3 0.11
12 17 0.63
13 7 0.26
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (12 bp):
CAACCAACCAAA
Left flanking sequence: Indices 258496 -- 258995
TTCTGCTTGTTGGACCAAGAAGGGTTGACCGGACCGGTTGGTTGGCTGGTTCTTCGCGTAGGACT
TATGCCTGCTTAAAAGTTGGCAAACCTTCGTGTTGAATCTGAGCGCAGCGAAGAACTTCTGCGGA
TTTCAAAAAAAGAGTGCCGGTTTCGCAGCGAAGAACACCCTTTAAGGTAGGCACGGATTTAAAGG
AAATCCGTCCTACAAAAAAATCTGAGCGCAGAAACCAACCCAACCACCTTCTGCACACTTTTTTT
TTTTTGGAGAAGTTAGTTTCTTCTGCAAAGCAAAGAAGTTCTTCTGCTTCACGCAGCAGAAGATC
TCTGCCCAAACAATTATTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCACTCCGAAAGCAGA
CTTCTGCTTCGCGCAGGGGTTCTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCC
TCCCCTCCCCTCCCCGGGGAAGAGAAACTTCTGCTTTCAAACAAC
Right flanking sequence: Indices 259037 -- 259536
TTCTACGTCCAAAAAGCAAGCAAGCTCTTCCCCCTTTTTTTAGGAAATCCGTCCCCTTCTGTCAA
AATTTCGCAGCGAGGCATAAGTTCTTGCAACAAACAAACAAACTTCTGCCGAACAGTCAGTTCGA
AAACTGAAACTTACTTTTCGGCCACTTTAAAAATGGCACACCTTGGATAAGGCACGAAGAACCTT
CTGCAAGCAAGCAACAAACAACCTTCTGCACGAAAAGTTTCGCTTACAAAGGTAGGCACGGATCC
CCAGGCACTCAGAGGGTTAACCAATGAGTGCCACTTCTTGGGGCCCTTCCCCAAAGGTAGGCACG
GATGTTTAGGTCCTTCGTGCCACTACGAATGAGTGCAAAAAAGCAGGCGGATCCAAGGAGTGGGA
CAACTTGGATCCCTACTTTGTCAGTTTGTGGCACGAATAGCTACCCTGCCACAAACGGCCGGCAA
ACAAACAACCAACCTTCTGGGCACTACCGTTATGGCAACCTCATA
Found at i:259009 original size:16 final size:16
Alignment explanation
Indices: 258988--259032 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
258978 CTTCTGCTTT
258988 CAAACAACCAACCAAA
1 CAAACAACCAACCAAA
259004 CAAACAACCAACCAAA
1 CAAACAACCAACCAAA
*
259020 CACACCAACCAAC
1 CA-AACAACCAAC
259033 AACCTTCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.58, C:0.42, G:0.00, T:0.00
Consensus pattern (16 bp):
CAAACAACCAACCAAA
Left flanking sequence: Indices 258488 -- 258987
GCAGAAACTTCTGCTTGTTGGACCAAGAAGGGTTGACCGGACCGGTTGGTTGGCTGGTTCTTCGC
GTAGGACTTATGCCTGCTTAAAAGTTGGCAAACCTTCGTGTTGAATCTGAGCGCAGCGAAGAACT
TCTGCGGATTTCAAAAAAAGAGTGCCGGTTTCGCAGCGAAGAACACCCTTTAAGGTAGGCACGGA
TTTAAAGGAAATCCGTCCTACAAAAAAATCTGAGCGCAGAAACCAACCCAACCACCTTCTGCACA
CTTTTTTTTTTTTGGAGAAGTTAGTTTCTTCTGCAAAGCAAAGAAGTTCTTCTGCTTCACGCAGC
AGAAGATCTCTGCCCAAACAATTATTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCACTCCG
AAAGCAGACTTCTGCTTCGCGCAGGGGTTCTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTC
CCCTCCCCTCCCCTCCCCTCCCCGGGGAAGAGAAACTTCTGCTTT
Right flanking sequence: Indices 259033 -- 259532
AACCTTCTACGTCCAAAAAGCAAGCAAGCTCTTCCCCCTTTTTTTAGGAAATCCGTCCCCTTCTG
TCAAAATTTCGCAGCGAGGCATAAGTTCTTGCAACAAACAAACAAACTTCTGCCGAACAGTCAGT
TCGAAAACTGAAACTTACTTTTCGGCCACTTTAAAAATGGCACACCTTGGATAAGGCACGAAGAA
CCTTCTGCAAGCAAGCAACAAACAACCTTCTGCACGAAAAGTTTCGCTTACAAAGGTAGGCACGG
ATCCCCAGGCACTCAGAGGGTTAACCAATGAGTGCCACTTCTTGGGGCCCTTCCCCAAAGGTAGG
CACGGATGTTTAGGTCCTTCGTGCCACTACGAATGAGTGCAAAAAAGCAGGCGGATCCAAGGAGT
GGGACAACTTGGATCCCTACTTTGTCAGTTTGTGGCACGAATAGCTACCCTGCCACAAACGGCCG
GCAAACAAACAACCAACCTTCTGGGCACTACCGTTATGGCAACCT
Found at i:259938 original size:16 final size:16
Alignment explanation
Indices: 259917--260063 Score: 91
Period size: 16 Copynumber: 8.8 Consensus size: 16
259907 GCGCAAAGGT
*
259917 CTTCCCTTCCCTGGGA
1 CTTCCCTTCCCTGGAA
***
259933 CTTCCCTTCCCT-TCC
1 CTTCCCTTCCCTGGAA
259948 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
****
259964 CTTCCCTTCCCTTCCCTTCC
1 CTTCCCTTCCC-T---GGAA
259984 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
*
260000 CTTCCCTCCCCTTCCCTGTAA
1 C-T---T-CCCTTCCCTGGAA
***
260021 CTTCCCTTCCCT-TCC
1 CTTCCCTTCCCTGGAA
260036 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
260052 CTTCCCTTCCCT
1 CTTCCCTTCCCT
260064 TCCTTCCCTT
Statistics
Matches: 100, Mismatches: 20, Indels: 22
0.70 0.14 0.15
Matches are distributed among these distances:
15 25 0.25
16 45 0.45
17 3 0.03
19 1 0.01
20 13 0.13
21 13 0.13
ACGTcount: A:0.06, C:0.52, G:0.07, T:0.35
Consensus pattern (16 bp):
CTTCCCTTCCCTGGAA
Left flanking sequence: Indices 259417 -- 259916
AGGAGTGGGACAACTTGGATCCCTACTTTGTCAGTTTGTGGCACGAATAGCTACCCTGCCACAAA
CGGCCGGCAAACAAACAACCAACCTTCTGGGCACTACCGTTATGGCAACCTCATATCGTTCGTGC
CACTATAAAAAGTGGCAAGCCTAGAGGATATTCTTTGGCCCTTCGTGCCACTATGAATGAGTGAG
AAGGTCGAGTGTCTGGCCGGTCCCGGCACTCCCGTACTTCAGAGGAAAGAGGGAAGACCGCTCTC
TTGGTCTCGTGTCCCGGCGGGCCCTCTCATGCGATTGACCAATTGTTGGGAAATCACGTATATAG
AGGGAGGGGACCCCCTACCCCCGAGTGCCCATTAGGGCCGAGTGGATCCGGCACGGATCCCCGGT
CCCGGCCACGGGTCGAGTGGATTAACCTTTATAGGGAGGGGGCTGGGTATCACGGGGTAATACAA
AGCTGTCGGTCTTCCCGAGTGGGCTTTGCGCGCGCGCGCAAAGGT
Right flanking sequence: Indices 260064 -- 260563
TCCTTCCCTTCCCTTCCCTAGTGTCCCGGACCCTATTAAAAAGCAAGCCACCCGGGAACCCACCC
GGCACGGTCAAGTGTCCCTATTGCCCGGACCCGGCAGCTTTGCCGATGTGCCGTAGGGTCGTCAA
TTCCTATTAGGATCATGAACAGTCAAAGATCACTTTAGCGGTTGAAACGAACCATTATTTTGCAC
AAAGATGGCTGTTTTCCACGAACCACAAAGATATAGGGACTCTATATTCAATCTTCGGTGCCTTG
GCTGGAGTAATGGGTACATGCTTCTCTGTACTAATTCGTATGGAATTGGCACAACCTGGCCCTCA
AATTCCTGGTGGGAATCATCAACTTTATAATGTGTTAATAACCGCTCACGCTTTTCCAATGATCT
CCTCTATGGTTATGCCGGCAATGATAGGTGGATTTGGTAATTGGTTCGTTCCGATTCTTATAGGT
GCACCTGACATGGCCTTTCCATGATCGAATAATATTCCCTTCCGG
Found at i:259941 original size:5 final size:5
Alignment explanation
Indices: 259933--260082 Score: 149
Period size: 5 Copynumber: 29.4 Consensus size: 5
259923 TTCCCTGGGA
***
259933 CTTCC CTTCC CTTCC CTTCC CTTCC CTGGAA CTTCC CTTCC CTTCC CTTCC
1 CTTCC CTTCC CTTCC CTTCC CTTCC CT-TCC CTTCC CTTCC CTTCC CTTCC
*** * **
259984 CTTCC CTTCC CTGGAA CTTCC CTCCC CTTCC CTGTAA CTTCC CTTCC CTTCC
1 CTTCC CTTCC CT-TCC CTTCC CTTCC CTTCC CT-TCC CTTCC CTTCC CTTCC
***
260036 CTTCC CTTCC CTGGAA CTTCC CTTCC CTT-C CTTCC CTTCC CTTCC CT
1 CTTCC CTTCC CT-TCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CT
260083 AGTGTCCCGG
Statistics
Matches: 116, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
4 4 0.03
5 103 0.89
6 9 0.08
ACGTcount: A:0.05, C:0.53, G:0.05, T:0.37
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 259433 -- 259932
GGATCCCTACTTTGTCAGTTTGTGGCACGAATAGCTACCCTGCCACAAACGGCCGGCAAACAAAC
AACCAACCTTCTGGGCACTACCGTTATGGCAACCTCATATCGTTCGTGCCACTATAAAAAGTGGC
AAGCCTAGAGGATATTCTTTGGCCCTTCGTGCCACTATGAATGAGTGAGAAGGTCGAGTGTCTGG
CCGGTCCCGGCACTCCCGTACTTCAGAGGAAAGAGGGAAGACCGCTCTCTTGGTCTCGTGTCCCG
GCGGGCCCTCTCATGCGATTGACCAATTGTTGGGAAATCACGTATATAGAGGGAGGGGACCCCCT
ACCCCCGAGTGCCCATTAGGGCCGAGTGGATCCGGCACGGATCCCCGGTCCCGGCCACGGGTCGA
GTGGATTAACCTTTATAGGGAGGGGGCTGGGTATCACGGGGTAATACAAAGCTGTCGGTCTTCCC
GAGTGGGCTTTGCGCGCGCGCGCAAAGGTCTTCCCTTCCCTGGGA
Right flanking sequence: Indices 260083 -- 260582
AGTGTCCCGGACCCTATTAAAAAGCAAGCCACCCGGGAACCCACCCGGCACGGTCAAGTGTCCCT
ATTGCCCGGACCCGGCAGCTTTGCCGATGTGCCGTAGGGTCGTCAATTCCTATTAGGATCATGAA
CAGTCAAAGATCACTTTAGCGGTTGAAACGAACCATTATTTTGCACAAAGATGGCTGTTTTCCAC
GAACCACAAAGATATAGGGACTCTATATTCAATCTTCGGTGCCTTGGCTGGAGTAATGGGTACAT
GCTTCTCTGTACTAATTCGTATGGAATTGGCACAACCTGGCCCTCAAATTCCTGGTGGGAATCAT
CAACTTTATAATGTGTTAATAACCGCTCACGCTTTTCCAATGATCTCCTCTATGGTTATGCCGGC
AATGATAGGTGGATTTGGTAATTGGTTCGTTCCGATTCTTATAGGTGCACCTGACATGGCCTTTC
CATGATCGAATAATATTCCCTTCCGGTTGTTGCCACCTCCGCTGT
Found at i:259943 original size:21 final size:21
Alignment explanation
Indices: 259917--260037 Score: 102
Period size: 21 Copynumber: 5.6 Consensus size: 21
259907 GCGCAAAGGT
**
259917 CTTCCCTTCCCTGGGACTTCC
1 CTTCCCTTCCCTGTAACTTCC
**
259938 CTTCCCTTCCCT-TCCCTTCC
1 CTTCCCTTCCCTGTAACTTCC
**
259958 CTGGAACTTCCCTTCCCT-TCCCTTCC
1 CT------TCCCTTCCCTGTAACTTCC
*
259984 CTTCCCTTCCCTGGAACTTCC
1 CTTCCCTTCCCTGTAACTTCC
*
260005 CTCCCCTTCCCTGTAACTTCC
1 CTTCCCTTCCCTGTAACTTCC
260026 CTTCCCTTCCCT
1 CTTCCCTTCCCT
260038 TCCCTTCCCT
Statistics
Matches: 84, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
20 17 0.20
21 47 0.56
26 20 0.24
ACGTcount: A:0.06, C:0.52, G:0.07, T:0.36
Consensus pattern (21 bp):
CTTCCCTTCCCTGTAACTTCC
Left flanking sequence: Indices 259417 -- 259916
AGGAGTGGGACAACTTGGATCCCTACTTTGTCAGTTTGTGGCACGAATAGCTACCCTGCCACAAA
CGGCCGGCAAACAAACAACCAACCTTCTGGGCACTACCGTTATGGCAACCTCATATCGTTCGTGC
CACTATAAAAAGTGGCAAGCCTAGAGGATATTCTTTGGCCCTTCGTGCCACTATGAATGAGTGAG
AAGGTCGAGTGTCTGGCCGGTCCCGGCACTCCCGTACTTCAGAGGAAAGAGGGAAGACCGCTCTC
TTGGTCTCGTGTCCCGGCGGGCCCTCTCATGCGATTGACCAATTGTTGGGAAATCACGTATATAG
AGGGAGGGGACCCCCTACCCCCGAGTGCCCATTAGGGCCGAGTGGATCCGGCACGGATCCCCGGT
CCCGGCCACGGGTCGAGTGGATTAACCTTTATAGGGAGGGGGCTGGGTATCACGGGGTAATACAA
AGCTGTCGGTCTTCCCGAGTGGGCTTTGCGCGCGCGCGCAAAGGT
Right flanking sequence: Indices 260038 -- 260537
TCCCTTCCCTGGAACTTCCCTTCCCTTCCTTCCCTTCCCTTCCCTAGTGTCCCGGACCCTATTAA
AAAGCAAGCCACCCGGGAACCCACCCGGCACGGTCAAGTGTCCCTATTGCCCGGACCCGGCAGCT
TTGCCGATGTGCCGTAGGGTCGTCAATTCCTATTAGGATCATGAACAGTCAAAGATCACTTTAGC
GGTTGAAACGAACCATTATTTTGCACAAAGATGGCTGTTTTCCACGAACCACAAAGATATAGGGA
CTCTATATTCAATCTTCGGTGCCTTGGCTGGAGTAATGGGTACATGCTTCTCTGTACTAATTCGT
ATGGAATTGGCACAACCTGGCCCTCAAATTCCTGGTGGGAATCATCAACTTTATAATGTGTTAAT
AACCGCTCACGCTTTTCCAATGATCTCCTCTATGGTTATGCCGGCAATGATAGGTGGATTTGGTA
ATTGGTTCGTTCCGATTCTTATAGGTGCACCTGACATGGCCTTTC
Found at i:259958 original size:36 final size:36
Alignment explanation
Indices: 259933--260032 Score: 164
Period size: 36 Copynumber: 2.8 Consensus size: 36
259923 TTCCCTGGGA
259933 CTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCC
1 CTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCC
259969 CTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCC
1 CTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCC
* **
260005 CTCCCCTTCCCTGTAACTTCCCTTCCCT
1 CTTCCCTTCCCT-TCCCTTCCCTTCCCT
260033 TCCCTTCCCT
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
36 47 0.78
37 13 0.22
ACGTcount: A:0.06, C:0.53, G:0.05, T:0.36
Consensus pattern (36 bp):
CTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCC
Left flanking sequence: Indices 259433 -- 259932
GGATCCCTACTTTGTCAGTTTGTGGCACGAATAGCTACCCTGCCACAAACGGCCGGCAAACAAAC
AACCAACCTTCTGGGCACTACCGTTATGGCAACCTCATATCGTTCGTGCCACTATAAAAAGTGGC
AAGCCTAGAGGATATTCTTTGGCCCTTCGTGCCACTATGAATGAGTGAGAAGGTCGAGTGTCTGG
CCGGTCCCGGCACTCCCGTACTTCAGAGGAAAGAGGGAAGACCGCTCTCTTGGTCTCGTGTCCCG
GCGGGCCCTCTCATGCGATTGACCAATTGTTGGGAAATCACGTATATAGAGGGAGGGGACCCCCT
ACCCCCGAGTGCCCATTAGGGCCGAGTGGATCCGGCACGGATCCCCGGTCCCGGCCACGGGTCGA
GTGGATTAACCTTTATAGGGAGGGGGCTGGGTATCACGGGGTAATACAAAGCTGTCGGTCTTCCC
GAGTGGGCTTTGCGCGCGCGCGCAAAGGTCTTCCCTTCCCTGGGA
Right flanking sequence: Indices 260033 -- 260532
TCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCTTCCCTTCCCTTCCCTAGTGTCCCGGACCCT
ATTAAAAAGCAAGCCACCCGGGAACCCACCCGGCACGGTCAAGTGTCCCTATTGCCCGGACCCGG
CAGCTTTGCCGATGTGCCGTAGGGTCGTCAATTCCTATTAGGATCATGAACAGTCAAAGATCACT
TTAGCGGTTGAAACGAACCATTATTTTGCACAAAGATGGCTGTTTTCCACGAACCACAAAGATAT
AGGGACTCTATATTCAATCTTCGGTGCCTTGGCTGGAGTAATGGGTACATGCTTCTCTGTACTAA
TTCGTATGGAATTGGCACAACCTGGCCCTCAAATTCCTGGTGGGAATCATCAACTTTATAATGTG
TTAATAACCGCTCACGCTTTTCCAATGATCTCCTCTATGGTTATGCCGGCAATGATAGGTGGATT
TGGTAATTGGTTCGTTCCGATTCTTATAGGTGCACCTGACATGGC
Found at i:260003 original size:26 final size:26
Alignment explanation
Indices: 259974--260072 Score: 121
Period size: 26 Copynumber: 3.8 Consensus size: 26
259964 CTTCCCTTCC
259974 CTTCCCTTCCCTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTTCCCTTCCCTGGAA
* ** ***
260000 CTTCCCTCCCCTTCCCTGTAACT-TCC
1 CTTCCCTTCCCTTCCCT-TCCCTGGAA
260026 CTTCCCTTCCCTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTTCCCTTCCCTGGAA
260052 CTTCCCTTCCCTT-CCTTCCCT
1 CTTCCCTTCCCTTCCCTTCCCT
260073 TCCCTTCCCT
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
25 11 0.19
26 45 0.76
27 3 0.05
ACGTcount: A:0.06, C:0.53, G:0.05, T:0.36
Consensus pattern (26 bp):
CTTCCCTTCCCTTCCCTTCCCTGGAA
Left flanking sequence: Indices 259474 -- 259973
GCCACAAACGGCCGGCAAACAAACAACCAACCTTCTGGGCACTACCGTTATGGCAACCTCATATC
GTTCGTGCCACTATAAAAAGTGGCAAGCCTAGAGGATATTCTTTGGCCCTTCGTGCCACTATGAA
TGAGTGAGAAGGTCGAGTGTCTGGCCGGTCCCGGCACTCCCGTACTTCAGAGGAAAGAGGGAAGA
CCGCTCTCTTGGTCTCGTGTCCCGGCGGGCCCTCTCATGCGATTGACCAATTGTTGGGAAATCAC
GTATATAGAGGGAGGGGACCCCCTACCCCCGAGTGCCCATTAGGGCCGAGTGGATCCGGCACGGA
TCCCCGGTCCCGGCCACGGGTCGAGTGGATTAACCTTTATAGGGAGGGGGCTGGGTATCACGGGG
TAATACAAAGCTGTCGGTCTTCCCGAGTGGGCTTTGCGCGCGCGCGCAAAGGTCTTCCCTTCCCT
GGGACTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCCCTTCC
Right flanking sequence: Indices 260073 -- 260572
TCCCTTCCCTAGTGTCCCGGACCCTATTAAAAAGCAAGCCACCCGGGAACCCACCCGGCACGGTC
AAGTGTCCCTATTGCCCGGACCCGGCAGCTTTGCCGATGTGCCGTAGGGTCGTCAATTCCTATTA
GGATCATGAACAGTCAAAGATCACTTTAGCGGTTGAAACGAACCATTATTTTGCACAAAGATGGC
TGTTTTCCACGAACCACAAAGATATAGGGACTCTATATTCAATCTTCGGTGCCTTGGCTGGAGTA
ATGGGTACATGCTTCTCTGTACTAATTCGTATGGAATTGGCACAACCTGGCCCTCAAATTCCTGG
TGGGAATCATCAACTTTATAATGTGTTAATAACCGCTCACGCTTTTCCAATGATCTCCTCTATGG
TTATGCCGGCAATGATAGGTGGATTTGGTAATTGGTTCGTTCCGATTCTTATAGGTGCACCTGAC
ATGGCCTTTCCATGATCGAATAATATTCCCTTCCGGTTGTTGCCA
Found at i:260012 original size:31 final size:31
Alignment explanation
Indices: 259917--260016 Score: 137
Period size: 31 Copynumber: 3.1 Consensus size: 31
259907 GCGCAAAGGT
* *
259917 CTTCCCTTCCCTGGGACTTCCCTTCCCTTCC
1 CTTCCCTTCCCTGGAACTTCCCTCCCCTTCC
259948 CTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCC
1 CTTCCCTTCCCTGGAACTTCCC-T--C--CCCTTCC
259984 CTTCCCTTCCCTGGAACTTCCCTCCCCTTCC
1 CTTCCCTTCCCTGGAACTTCCCTCCCCTTCC
260015 CT
1 CT
260017 GTAACTTCCC
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
31 30 0.48
32 1 0.02
33 1 0.02
35 1 0.02
36 29 0.47
ACGTcount: A:0.05, C:0.53, G:0.07, T:0.35
Consensus pattern (31 bp):
CTTCCCTTCCCTGGAACTTCCCTCCCCTTCC
Left flanking sequence: Indices 259417 -- 259916
AGGAGTGGGACAACTTGGATCCCTACTTTGTCAGTTTGTGGCACGAATAGCTACCCTGCCACAAA
CGGCCGGCAAACAAACAACCAACCTTCTGGGCACTACCGTTATGGCAACCTCATATCGTTCGTGC
CACTATAAAAAGTGGCAAGCCTAGAGGATATTCTTTGGCCCTTCGTGCCACTATGAATGAGTGAG
AAGGTCGAGTGTCTGGCCGGTCCCGGCACTCCCGTACTTCAGAGGAAAGAGGGAAGACCGCTCTC
TTGGTCTCGTGTCCCGGCGGGCCCTCTCATGCGATTGACCAATTGTTGGGAAATCACGTATATAG
AGGGAGGGGACCCCCTACCCCCGAGTGCCCATTAGGGCCGAGTGGATCCGGCACGGATCCCCGGT
CCCGGCCACGGGTCGAGTGGATTAACCTTTATAGGGAGGGGGCTGGGTATCACGGGGTAATACAA
AGCTGTCGGTCTTCCCGAGTGGGCTTTGCGCGCGCGCGCAAAGGT
Right flanking sequence: Indices 260017 -- 260516
GTAACTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCTTCCCTTCCCTTCCC
TAGTGTCCCGGACCCTATTAAAAAGCAAGCCACCCGGGAACCCACCCGGCACGGTCAAGTGTCCC
TATTGCCCGGACCCGGCAGCTTTGCCGATGTGCCGTAGGGTCGTCAATTCCTATTAGGATCATGA
ACAGTCAAAGATCACTTTAGCGGTTGAAACGAACCATTATTTTGCACAAAGATGGCTGTTTTCCA
CGAACCACAAAGATATAGGGACTCTATATTCAATCTTCGGTGCCTTGGCTGGAGTAATGGGTACA
TGCTTCTCTGTACTAATTCGTATGGAATTGGCACAACCTGGCCCTCAAATTCCTGGTGGGAATCA
TCAACTTTATAATGTGTTAATAACCGCTCACGCTTTTCCAATGATCTCCTCTATGGTTATGCCGG
CAATGATAGGTGGATTTGGTAATTGGTTCGTTCCGATTCTTATAG
Found at i:260066 original size:31 final size:31
Alignment explanation
Indices: 259917--259990 Score: 139
Period size: 31 Copynumber: 2.4 Consensus size: 31
259907 GCGCAAAGGT
*
259917 CTTCCCTTCCCTGGGACTTCCCTTCCCTTCC
1 CTTCCCTTCCCTGGAACTTCCCTTCCCTTCC
259948 CTTCCCTTCCCTGGAACTTCCCTTCCCTTCC
1 CTTCCCTTCCCTGGAACTTCCCTTCCCTTCC
259979 CTTCCCTTCCCT
1 CTTCCCTTCCCT
259991 TCCCTGGAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.04, C:0.53, G:0.07, T:0.36
Consensus pattern (31 bp):
CTTCCCTTCCCTGGAACTTCCCTTCCCTTCC
Left flanking sequence: Indices 259417 -- 259916
AGGAGTGGGACAACTTGGATCCCTACTTTGTCAGTTTGTGGCACGAATAGCTACCCTGCCACAAA
CGGCCGGCAAACAAACAACCAACCTTCTGGGCACTACCGTTATGGCAACCTCATATCGTTCGTGC
CACTATAAAAAGTGGCAAGCCTAGAGGATATTCTTTGGCCCTTCGTGCCACTATGAATGAGTGAG
AAGGTCGAGTGTCTGGCCGGTCCCGGCACTCCCGTACTTCAGAGGAAAGAGGGAAGACCGCTCTC
TTGGTCTCGTGTCCCGGCGGGCCCTCTCATGCGATTGACCAATTGTTGGGAAATCACGTATATAG
AGGGAGGGGACCCCCTACCCCCGAGTGCCCATTAGGGCCGAGTGGATCCGGCACGGATCCCCGGT
CCCGGCCACGGGTCGAGTGGATTAACCTTTATAGGGAGGGGGCTGGGTATCACGGGGTAATACAA
AGCTGTCGGTCTTCCCGAGTGGGCTTTGCGCGCGCGCGCAAAGGT
Right flanking sequence: Indices 259991 -- 260490
TCCCTGGAACTTCCCTCCCCTTCCCTGTAACTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTC
CCTTCCCTTCCTTCCCTTCCCTTCCCTAGTGTCCCGGACCCTATTAAAAAGCAAGCCACCCGGGA
ACCCACCCGGCACGGTCAAGTGTCCCTATTGCCCGGACCCGGCAGCTTTGCCGATGTGCCGTAGG
GTCGTCAATTCCTATTAGGATCATGAACAGTCAAAGATCACTTTAGCGGTTGAAACGAACCATTA
TTTTGCACAAAGATGGCTGTTTTCCACGAACCACAAAGATATAGGGACTCTATATTCAATCTTCG
GTGCCTTGGCTGGAGTAATGGGTACATGCTTCTCTGTACTAATTCGTATGGAATTGGCACAACCT
GGCCCTCAAATTCCTGGTGGGAATCATCAACTTTATAATGTGTTAATAACCGCTCACGCTTTTCC
AATGATCTCCTCTATGGTTATGCCGGCAATGATAGGTGGATTTGG
Found at i:261813 original size:5 final size:5
Alignment explanation
Indices: 261803--261844 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
261793 AACTATTCCC
261803 AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AG
1 AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AG
261845 AACCCCTGCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.21, C:0.00, G:0.79, T:0.00
Consensus pattern (5 bp):
AGGGG
Left flanking sequence: Indices 261303 -- 261802
CTTAGAGTAAAACGGGGGGAAGCCCGCCCCCTGCCAGGAGGGTTTCCCAGTTGGGAGAGTGTCCT
GGCAGGGGGGAATACACTCTTCCTCCTTCAAACCCCCGGCTCCTCCCCCGTCCCCGTTGCGCAAG
GCAAGTAGGGATCCAAGGGAGAGTCTGAGGTGGCCATAACGGTAGTGCGTGCCAAGTTGCTTGCC
CAGGCTGTTTGCCGGCCGGCACTCATAGGACAGCTATTCGTGCAAATAGGGGAAGAGGGAGATCT
TAAGGGAAGGAGGGAGAGTGGGACCTGAACTTATTCCCCTGCGCGAAGATTCAACACGCAAGCAA
GCCAGCAACCCGCCCAACAAGGACTTTTGGCACGGGGGAAAGCTGCGCGAAGCAAAAGTTCGCAC
GCACCTTCTTGCTTTGTCCAACAAGAACTTTTGGCACGGCACGGGGGAAGGGAAGGGAAGGGAAA
GCTGCGCTCAGATTCAACACGAAGGCCAACAAGAAAACTATTCCC
Right flanking sequence: Indices 261845 -- 262344
AACCCCTGCGCTCGGAAAACTTCTGCTTCCCCTTCTTCGCACGGGGGAAGGGAAAGCTGCGCTCA
GAAAGCAAGCGCAACCTTCTGCACACCTTGGATCCCGACTGTTTAAGCGATTGAATTCGTGCCAC
GGGCAACTTCAGAAAAGCAGTTCATTCGTGCAATAGGGAAGGAGGGATAGTGGTTCCTTGGATCC
CGACAACTGTTTCCATTCGTGCCACTTTTTTTTTAAAGTGGCACTCATTCTGTTCTGCTTTCATT
CGTGCAAACTTCACTGTTTTCCCCCGTGCCTACCTTTGTAATAATCCGTGCCTACCTTTGTAAGC
GAAGTTGATTCGAGGGAATAAGGTTGGTTGAAAGTTTGTTTGTGCCACTGAAATTACTTACAAAG
GTAGGCGCCGTTGCACTTTTAAAGGATTTTAACGGGCCCGTGCAAGCAAGCCTACCTTTGTGAAC
GTGATAGAAGTGTGGCAAGAATGAGTGCCTTCGAAACAACCTTTT
Found at i:262378 original size:4 final size:4
Alignment explanation
Indices: 262369--262436 Score: 136
Period size: 4 Copynumber: 17.0 Consensus size: 4
262359 TTCACACTTT
262369 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
262417 TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC
262437 AGAAGGTTGG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 64 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 261869 -- 262368
GCTTCCCCTTCTTCGCACGGGGGAAGGGAAAGCTGCGCTCAGAAAGCAAGCGCAACCTTCTGCAC
ACCTTGGATCCCGACTGTTTAAGCGATTGAATTCGTGCCACGGGCAACTTCAGAAAAGCAGTTCA
TTCGTGCAATAGGGAAGGAGGGATAGTGGTTCCTTGGATCCCGACAACTGTTTCCATTCGTGCCA
CTTTTTTTTTAAAGTGGCACTCATTCTGTTCTGCTTTCATTCGTGCAAACTTCACTGTTTTCCCC
CGTGCCTACCTTTGTAATAATCCGTGCCTACCTTTGTAAGCGAAGTTGATTCGAGGGAATAAGGT
TGGTTGAAAGTTTGTTTGTGCCACTGAAATTACTTACAAAGGTAGGCGCCGTTGCACTTTTAAAG
GATTTTAACGGGCCCGTGCAAGCAAGCCTACCTTTGTGAACGTGATAGAAGTGTGGCAAGAATGA
GTGCCTTCGAAACAACCTTTTCGTGCGTGCAGAAGTTCACACTTT
Right flanking sequence: Indices 262437 -- 262936
AGAAGGTTGGTTCTCCGGCAACCCAAAAAGAACTTACTTTTTGGGTTGCCGGCTAGCACGGGGGA
AGGTAAAGCTGCGCTCAGAACTCTTAAGAAGTTGCAAGTTGAAATCCGTCCTTTGTCATTTCGAA
ACAACCAAGAATCCAATTCGTGCGTGCAGAAGTTAGTTATTTTTGGGTTATCCGCCTACCTTTGT
AACTTTTTGGGCTTGCGGTTGGTTGTTTCGGAGAAAAGGCACGAAAAGGTTGTTTCGAAAGCACT
CATTCTTGCCATTAAAAGTGGCACGAAGGCACGAACAACCAGCCCTTCCAAACACACACACCTTT
TGGCACGAATTAACAACAGTTTGCACGAATCCCCAGGCACGAATTAACAACAGTTTGCACGAATG
AAACAGCTTTTGCACGAATGAAACCTAAACTTTTAAGGGATCCAAGGACCCACTCCTTGGATCCG
TATCCCTTTTGCACGAATGAAACAGCTTTTGCGCGCCCTCTCCTA
Found at i:262789 original size:20 final size:20
Alignment explanation
Indices: 262764--262825 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
262754 ACACCTTTTG
262764 GCACGAATTAACAACAGTTT
1 GCACGAATTAACAACAGTTT
**
262784 GCACGAA-T--CCCCAG---
1 GCACGAATTAACAACAGTTT
262798 GCACGAATTAACAACAGTTT
1 GCACGAATTAACAACAGTTT
262818 GCACGAAT
1 GCACGAAT
262826 GAAACAGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
14 7 0.22
15 1 0.03
17 8 0.25
19 1 0.03
20 15 0.47
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.19
Consensus pattern (20 bp):
GCACGAATTAACAACAGTTT
Left flanking sequence: Indices 262264 -- 262763
TAACGGGCCCGTGCAAGCAAGCCTACCTTTGTGAACGTGATAGAAGTGTGGCAAGAATGAGTGCC
TTCGAAACAACCTTTTCGTGCGTGCAGAAGTTCACACTTTTTGCTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCAGAAGGTTGGTTCTCCGGCAAC
CCAAAAAGAACTTACTTTTTGGGTTGCCGGCTAGCACGGGGGAAGGTAAAGCTGCGCTCAGAACT
CTTAAGAAGTTGCAAGTTGAAATCCGTCCTTTGTCATTTCGAAACAACCAAGAATCCAATTCGTG
CGTGCAGAAGTTAGTTATTTTTGGGTTATCCGCCTACCTTTGTAACTTTTTGGGCTTGCGGTTGG
TTGTTTCGGAGAAAAGGCACGAAAAGGTTGTTTCGAAAGCACTCATTCTTGCCATTAAAAGTGGC
ACGAAGGCACGAACAACCAGCCCTTCCAAACACACACACCTTTTG
Right flanking sequence: Indices 262826 -- 263325
GAAACAGCTTTTGCACGAATGAAACCTAAACTTTTAAGGGATCCAAGGACCCACTCCTTGGATCC
GTATCCCTTTTGCACGAATGAAACAGCTTTTGCGCGCCCTCTCCTATTCCTCTTCCTCTGATTAG
AGAAGTTACCCAATGAGTGCCACTTTAATTAAAAGTGGCACGAAAGGTTGGTTGTTTAGCCGGGC
TTTGTTTGTTAGTCTTTGCTTCGCTCCGCCCAGTCAAAGATAACCTTCGAATGAAGGCAGGCCTG
TATCACCGAGTGAACGGACCTCTAGTCAGGGGACTACGGCACGGAAGCACAAGTGAAGGCCTTCC
ATCTTGATTCCGGAGGATCACCTCACTACCGAGCTGCCTACGCTACATGGCTTAGTTCATTGCCG
AACTAAGCTGCTTTGCGAAAGGAAAGGGAACTGCGATCCTCTCCGCCTGCCCTACAGGAGCGGAT
ACTATTGGTTACTAGTGAGATCTAGTTACTTCTATTTACACAAAC
Found at i:263483 original size:13 final size:13
Alignment explanation
Indices: 263465--263495 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
263455 GGTAGAAATC
*
263465 GGGATCCAAGGAG
1 GGGATCCAAGGAA
263478 GGGATCCAAGGAA
1 GGGATCCAAGGAA
263491 GGGAT
1 GGGAT
263496 TACGGGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.45, T:0.10
Consensus pattern (13 bp):
GGGATCCAAGGAA
Left flanking sequence: Indices 262965 -- 263464
CCAATGAGTGCCACTTTAATTAAAAGTGGCACGAAAGGTTGGTTGTTTAGCCGGGCTTTGTTTGT
TAGTCTTTGCTTCGCTCCGCCCAGTCAAAGATAACCTTCGAATGAAGGCAGGCCTGTATCACCGA
GTGAACGGACCTCTAGTCAGGGGACTACGGCACGGAAGCACAAGTGAAGGCCTTCCATCTTGATT
CCGGAGGATCACCTCACTACCGAGCTGCCTACGCTACATGGCTTAGTTCATTGCCGAACTAAGCT
GCTTTGCGAAAGGAAAGGGAACTGCGATCCTCTCCGCCTGCCCTACAGGAGCGGATACTATTGGT
TACTAGTGAGATCTAGTTACTTCTATTTACACAAACTCCGGGGACATCGCTACGTTTCGGTTGCG
CCCTCTCCCTGTCCTGCGGGTTAAGGTCGAGTGGATGGCCTTAAAGGTCTTCCCCGTGCGAGGGG
AATACCCGTCCGGGATTAAAGAGTGGAGGATGGCAGGTAGAAATC
Right flanking sequence: Indices 263496 -- 263995
TACGGGATTGCTTGCAATAATCCGATCTTTTTTAGTGGGATCCAAGTGGCCGGGGGTTGGGGCCC
CCACCTTGGATCCCAATCCCCCTCCACTTGGATCCCGTGTTTTTTGGCTAAACATCCGTGCCAAT
GAGAGGTTTTTGTTGGCCTGAAAGGTTGTTGATTCGTGCAAAGAATCTTTTCCTTCCCCCGCTGC
GCTCAGAAAGCTAGCTCTTTTTGTGGGCAAGATCTTCCTTTAAATCCGTGCCGAACTGCCGAACT
TTCAACGGCACTGGTTGTTTCGAAGACTGAGTGAGTGCCTTCGAAACAACCAGTGCCGTTGAAAG
TTCGGCCCAAAAAGAGCTAGCTTTCAAAGGTAGGCTTGCACGGGGGAAAGCCACAGTTTTCGAAA
CAACCAGTGCCGTGGCCACGAGATTACAAAGGTAGGCTGGCACGGGGGAAAGGTGTGAACAAAAA
AAGAGTGCGGGTTGTTTTTCGCAGCGGAGAAACTTCTGCTTTCAA
Found at i:264010 original size:12 final size:12
Alignment explanation
Indices: 264001--264041 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
263991 TTCAAACAAC
*
264001 CAACCAAACAAA
1 CAACCAACCAAA
264013 CAACCAACCAAA
1 CAACCAACCAAA
264025 CACACCAACC-AA
1 CA-ACCAACCAAA
264037 CAACC
1 CAACC
264042 TTCTACGTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 3 0.11
12 17 0.63
13 7 0.26
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (12 bp):
CAACCAACCAAA
Left flanking sequence: Indices 263501 -- 264000
GATTGCTTGCAATAATCCGATCTTTTTTAGTGGGATCCAAGTGGCCGGGGGTTGGGGCCCCCACC
TTGGATCCCAATCCCCCTCCACTTGGATCCCGTGTTTTTTGGCTAAACATCCGTGCCAATGAGAG
GTTTTTGTTGGCCTGAAAGGTTGTTGATTCGTGCAAAGAATCTTTTCCTTCCCCCGCTGCGCTCA
GAAAGCTAGCTCTTTTTGTGGGCAAGATCTTCCTTTAAATCCGTGCCGAACTGCCGAACTTTCAA
CGGCACTGGTTGTTTCGAAGACTGAGTGAGTGCCTTCGAAACAACCAGTGCCGTTGAAAGTTCGG
CCCAAAAAGAGCTAGCTTTCAAAGGTAGGCTTGCACGGGGGAAAGCCACAGTTTTCGAAACAACC
AGTGCCGTGGCCACGAGATTACAAAGGTAGGCTGGCACGGGGGAAAGGTGTGAACAAAAAAAGAG
TGCGGGTTGTTTTTCGCAGCGGAGAAACTTCTGCTTTCAAACAAC
Right flanking sequence: Indices 264042 -- 264483
TTCTACGTCCAAAAAGCAAGCAAGCTCTTCCCCCTTTTTTTAGGAAATCCGTCCCGAAAGTAGCA
GAAGTTTTCGCAGCGAAGCAGAAGATCTTGCACGAAGAAAAGGCCCGTATTCAACTGCTTGTAAA
AGTGGCGTCCCGCCTACCTTTGTAAGCGAATGAGTGCAGAAGGGTTGCCGCAGGCAGAAGTTGCT
TGCTTGCAGAAGGTTCTTTCCCCCGTGCCGTGCCTGGCACGGTAGCTGCGCGAAGCAGAAGTTGG
GTCGTCCCCCGTTGTGTAGCTGCGCTCAGAAAGCGCTTTTGGTTCAAAGCAGAAGTCGGTAGCTG
CGCTCAGAAAGCAAGCGCAACCTTCTGCACACCTTTGGGGAGGGGAAGGGCCTTCCCCCAACCGT
GGCCGAAGAGTTTCGCTTACAAAGGTCGGCTGGCACGGGGGAGGGGAGGGGA
Found at i:264014 original size:16 final size:16
Alignment explanation
Indices: 263993--264037 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
263983 CTTCTGCTTT
263993 CAAACAACCAACCAAA
1 CAAACAACCAACCAAA
264009 CAAACAACCAACCAAA
1 CAAACAACCAACCAAA
*
264025 CACACCAACCAAC
1 CA-AACAACCAAC
264038 AACCTTCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.58, C:0.42, G:0.00, T:0.00
Consensus pattern (16 bp):
CAAACAACCAACCAAA
Left flanking sequence: Indices 263493 -- 263992
GATTACGGGATTGCTTGCAATAATCCGATCTTTTTTAGTGGGATCCAAGTGGCCGGGGGTTGGGG
CCCCCACCTTGGATCCCAATCCCCCTCCACTTGGATCCCGTGTTTTTTGGCTAAACATCCGTGCC
AATGAGAGGTTTTTGTTGGCCTGAAAGGTTGTTGATTCGTGCAAAGAATCTTTTCCTTCCCCCGC
TGCGCTCAGAAAGCTAGCTCTTTTTGTGGGCAAGATCTTCCTTTAAATCCGTGCCGAACTGCCGA
ACTTTCAACGGCACTGGTTGTTTCGAAGACTGAGTGAGTGCCTTCGAAACAACCAGTGCCGTTGA
AAGTTCGGCCCAAAAAGAGCTAGCTTTCAAAGGTAGGCTTGCACGGGGGAAAGCCACAGTTTTCG
AAACAACCAGTGCCGTGGCCACGAGATTACAAAGGTAGGCTGGCACGGGGGAAAGGTGTGAACAA
AAAAAGAGTGCGGGTTGTTTTTCGCAGCGGAGAAACTTCTGCTTT
Right flanking sequence: Indices 264038 -- 264483
AACCTTCTACGTCCAAAAAGCAAGCAAGCTCTTCCCCCTTTTTTTAGGAAATCCGTCCCGAAAGT
AGCAGAAGTTTTCGCAGCGAAGCAGAAGATCTTGCACGAAGAAAAGGCCCGTATTCAACTGCTTG
TAAAAGTGGCGTCCCGCCTACCTTTGTAAGCGAATGAGTGCAGAAGGGTTGCCGCAGGCAGAAGT
TGCTTGCTTGCAGAAGGTTCTTTCCCCCGTGCCGTGCCTGGCACGGTAGCTGCGCGAAGCAGAAG
TTGGGTCGTCCCCCGTTGTGTAGCTGCGCTCAGAAAGCGCTTTTGGTTCAAAGCAGAAGTCGGTA
GCTGCGCTCAGAAAGCAAGCGCAACCTTCTGCACACCTTTGGGGAGGGGAAGGGCCTTCCCCCAA
CCGTGGCCGAAGAGTTTCGCTTACAAAGGTCGGCTGGCACGGGGGAGGGGAGGGGA
Done.