Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KX171639
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 264483
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
File 1 of 2
Found at i:362 original size:5 final size:5
Alignment explanation
Indices: 352--376 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
342 AACTATTCCC
352 AGGGG AGGGG AGGGG AGGGG AGGGG
1 AGGGG AGGGG AGGGG AGGGG AGGGG
377 CCTGCGCTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
AGGGG
Left flanking sequence: Indices 1 -- 351
GGGGAGGAGAACCCCTGCGCGAAGCAGAAGTCTGCTTTCGGAGTGGAATACTTGCTTGCTTTCTT
TAAAGTGTGCAGAATAATTGTTTGGGCAGAGATCTTCTGCTGCGTGAAGCAGAAGAACTTCTTTG
CTTTGCAGAAGAAACTAACTTCTCCAAAAAAAAAAAAGTGTGCAGAAGGTGGTTGGGTTGGTTTC
TGCGCTCAGATTTTTTTGTAGGACGGATTTCCTTTAAATCCGTGCCTACCTTAAAGGGTGTTCTT
CGCTGCGAAACCGGCACTCTTTTTTTGAAATCCGCAGAAGTTCTTCGCTGCGCTCAGATTCAACA
CGAAGGCCAACAAGAAAACTATTCCC
Right flanking sequence: Indices 377 -- 876
CCTGCGCTCGGTCAAGAACACCCTTCTGCAACCAAGGGGAAAAGGTTGACCTTCTGGTTCCAAAC
AACCAACAACCTTCTGCTTCCCCCCAACAACCCAGAAGTTCAAACCAAACAACCTTTTACCCTGG
CCCAACGCAGAAGTTCTACGCGAAGCAGAAGTTCACACCAAACAACCTTCAAACTGGAGGCTTCT
TGGCCCTTGGATCCCAACTCTACAAACTTGGATCCCGACGTCTGCTTTTGAGGTTTCATTCGTGC
TTGCCACAAACCGTAGGCAACCAACCTTCCTTTTTGCACTCATTCGGTTTAAAAAGTGGCTTAGA
AGTGGGTTGTCGTAGAATGAGTTTGTTGGCCAATGAGTGCAGAAGGTTGGTTGTTTGTTGCTTGC
TTGCAGAAGGTTCTTTCCCCAGCCTACCTTTGTGAACGTGTGGCAAGAATGAGTGCGTCTCATCC
GTGCGGAATGAGTGAACTTTTTTTTTGGGTTCTCCGTAAAAAAAA
Found at i:1158 original size:33 final size:33
Alignment explanation
Indices: 1116--1192 Score: 154
Period size: 33 Copynumber: 2.3 Consensus size: 33
1106 AGGACGGATT
1116 TCCAAAACAAAACAACCAAGATTGGAGTGGAGG
1 TCCAAAACAAAACAACCAAGATTGGAGTGGAGG
1149 TCCAAAACAAAACAACCAAGATTGGAGTGGAGG
1 TCCAAAACAAAACAACCAAGATTGGAGTGGAGG
1182 TCCAAAACAAA
1 TCCAAAACAAA
1193 GCAAAAGTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.48, C:0.19, G:0.21, T:0.12
Consensus pattern (33 bp):
TCCAAAACAAAACAACCAAGATTGGAGTGGAGG
Left flanking sequence: Indices 616 -- 1115
CTTTTGAGGTTTCATTCGTGCTTGCCACAAACCGTAGGCAACCAACCTTCCTTTTTGCACTCATT
CGGTTTAAAAAGTGGCTTAGAAGTGGGTTGTCGTAGAATGAGTTTGTTGGCCAATGAGTGCAGAA
GGTTGGTTGTTTGTTGCTTGCTTGCAGAAGGTTCTTTCCCCAGCCTACCTTTGTGAACGTGTGGC
AAGAATGAGTGCGTCTCATCCGTGCGGAATGAGTGAACTTTTTTTTTGGGTTCTCCGTAAAAAAA
AGTTGCCTTCCCTTAACCTCGCGGGGCTCGGAGAACTTACACCCTTCTGCACATACAGTTGCAGA
AGTTCTCGCAGAAGGCCCTTCCCCTCCCCGGTGCTCGGTAAAGAACTTCCAAACAACCTTCTGCC
TCCCCGGCACTCATGAACCGTTGTCGGGATCCAAGACCCACTACTTGGATCCGTATCCCCTTCTG
CCGAAAAGTTTCGAAGTGTGGCAAGTCGGGATCCAAGGACGGATT
Right flanking sequence: Indices 1193 -- 1692
GCAAAAGTTATGAGCGCAGCGAATAACTTTGAACCACTCTCCGCTCCGGGCGTTCTCTTCCCCTG
CGCTCGGTAAAGAACTCCTGCCACCTCTGGAACCCCCTCATCCCCTGGCAGGCAAAGTAGGGATC
CAAGTTGTCCCACCCGTAACTCCGTTTGCCCTGGGAGCACGGAGTTAAGGTGGGCACCCGGCACG
GGACTCCTTGGATCTCCTACCCCCCTACTTGGATCCCCACCCCCCGGTAGTAGTGGCACGAATCT
TAGGCCCTCATTGGCCAGACAATCAGCAGGGAACGAACCCTGTTTGGTTCCCCCTCAGAGACTAG
ACGCCAAACTTCTCTAGCCAACTAAACCCCTTATCTTCGGGGCCCCAGCCCAGGTATGTGCCTTT
ACCGAGCGCAGGGGAAGAGAACACCCGGAGAGTGTCCCGTAAGGGAAGGGATCCAAGGGCTGGCA
GGTAGAGTGGTTCCCCCGGGTTGAGTGCCGGTAGTGCCACTTGCC
Found at i:1431 original size:20 final size:21
Alignment explanation
Indices: 1394--1432 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
1384 CACGGGACTC
*
1394 CTTGGATCTCCTACCCCCCTA
1 CTTGGATCTCCCACCCCCCTA
1415 CTTGGATC-CCCACCCCCC
1 CTTGGATCTCCCACCCCCC
1433 GGTAGTAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.13, C:0.54, G:0.10, T:0.23
Consensus pattern (21 bp):
CTTGGATCTCCCACCCCCCTA
Left flanking sequence: Indices 894 -- 1393
TCGCGGGGCTCGGAGAACTTACACCCTTCTGCACATACAGTTGCAGAAGTTCTCGCAGAAGGCCC
TTCCCCTCCCCGGTGCTCGGTAAAGAACTTCCAAACAACCTTCTGCCTCCCCGGCACTCATGAAC
CGTTGTCGGGATCCAAGACCCACTACTTGGATCCGTATCCCCTTCTGCCGAAAAGTTTCGAAGTG
TGGCAAGTCGGGATCCAAGGACGGATTTCCAAAACAAAACAACCAAGATTGGAGTGGAGGTCCAA
AACAAAACAACCAAGATTGGAGTGGAGGTCCAAAACAAAGCAAAAGTTATGAGCGCAGCGAATAA
CTTTGAACCACTCTCCGCTCCGGGCGTTCTCTTCCCCTGCGCTCGGTAAAGAACTCCTGCCACCT
CTGGAACCCCCTCATCCCCTGGCAGGCAAAGTAGGGATCCAAGTTGTCCCACCCGTAACTCCGTT
TGCCCTGGGAGCACGGAGTTAAGGTGGGCACCCGGCACGGGACTC
Right flanking sequence: Indices 1433 -- 1932
GGTAGTAGTGGCACGAATCTTAGGCCCTCATTGGCCAGACAATCAGCAGGGAACGAACCCTGTTT
GGTTCCCCCTCAGAGACTAGACGCCAAACTTCTCTAGCCAACTAAACCCCTTATCTTCGGGGCCC
CAGCCCAGGTATGTGCCTTTACCGAGCGCAGGGGAAGAGAACACCCGGAGAGTGTCCCGTAAGGG
AAGGGATCCAAGGGCTGGCAGGTAGAGTGGTTCCCCCGGGTTGAGTGCCGGTAGTGCCACTTGCC
ATTTTTAATGGCAACCAACTTTCAACCTTCTGCCTGCACGAAGAGTTTCGAAATTACAAAGGTAG
GCTGGCACGGATAGCAACAACCTTTCCCCCTGCGCACGAAAAGTTTCGCAGGTAGGCGGCAGAAG
TGCCACAAACAACCAACCTTTTACACTTATTCCCTTGTGGCAAGTGGCCCGGCCAAGTCGGGATC
CAAGTTGTCCCACTCGTAACTCCTTCCCTCATTCGCTTACAAAGG
Found at i:2270 original size:75 final size:75
Alignment explanation
Indices: 2170--2325 Score: 296
Period size: 75 Copynumber: 2.1 Consensus size: 75
2160 GCTGCGCGAA
2170 GCAGAAGAGCTTGCTTGCTTGGTCCCAAAAAAAGCAAGACGCAGTTTCGTGTGCAGAAGTTAAGT
1 GCAGAAGAGCTTGCTTGCTTGGTCCCAAAAAAAGCAAGACGCAGTTTCGTGTGCAGAAGTTAAGT
2235 TAGTTTCTGC
66 TAGTTTCTGC
*
2245 GCAGAGGAGCTTGCTTGCTTGGTCCCAAAAAAAGCAAGACGCAGTTTCGTGTGCAGAAGTTAAGT
1 GCAGAAGAGCTTGCTTGCTTGGTCCCAAAAAAAGCAAGACGCAGTTTCGTGTGCAGAAGTTAAGT
2310 TAGTTTCTGC
66 TAGTTTCTGC
2320 GC-GAAG
1 GCAGAAG
2326 CAGAAGTTTG
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
74 3 0.04
75 76 0.96
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (75 bp):
GCAGAAGAGCTTGCTTGCTTGGTCCCAAAAAAAGCAAGACGCAGTTTCGTGTGCAGAAGTTAAGT
TAGTTTCTGC
Left flanking sequence: Indices 1670 -- 2169
GAGTGCCGGTAGTGCCACTTGCCATTTTTAATGGCAACCAACTTTCAACCTTCTGCCTGCACGAA
GAGTTTCGAAATTACAAAGGTAGGCTGGCACGGATAGCAACAACCTTTCCCCCTGCGCACGAAAA
GTTTCGCAGGTAGGCGGCAGAAGTGCCACAAACAACCAACCTTTTACACTTATTCCCTTGTGGCA
AGTGGCCCGGCCAAGTCGGGATCCAAGTTGTCCCACTCGTAACTCCTTCCCTCATTCGCTTACAA
AGGTAGGCTGGCACGGATCTCCTTTAAATCCGTGCCTACCTGTTCCCGCAAGGGAAGGGCTGCGA
AAACTTCTGCTTTTGAAATCCGTCCAACTGCCTTTAAAGTGTGCAGAAGGGAAACTAACTTCTGC
CCCTTCCCCTGCGCGGGGAGAAGCTCTTCCCTTCCCGGAGTTCCAAAAAAAGCAAGACGCAGTTT
CGTGTGCAGAAGGATTGTTTGGGCAGAGATCTTCTGCTGCGCGAA
Right flanking sequence: Indices 2326 -- 2825
CAGAAGTTTGGAAGCATAAGTTCTTCGCTGCGCTCAGAACAACCCCCGCCAACCCGCAGGCAGAA
GTGTGTTTCTCCGCTGCGCGAAGCAGAAGTTAGTCTCTTGTCCAAAAAGTGTGAACTCCGCCTTT
TTTTGGAGGTCTTCCCCTGGCACGGTAGCTGCGCTCAGAAAGCAAGCGCTTTTGGAAATCCGCAG
AAGGTTCTTTGCTTCGCGCAGCGAAGCAGAAGTTCCAACCTTCTGCGGATTTCCAGCAATTCCCC
CGTGTGAACTTCTGCTTCGCGCAGCTACGCAGAAGCCGGTGCGGATTTCCAAAAGCAGAAGTCTC
TTTCTGAGCGCAGCGGTGAAGGGGAAGGCCCCTCTGCACACAAAGTGTGGTGTTCTTGACGGATT
TCCAAAACAAAACAAAAGTTCGCTTCTGCTTTGAACCACTCTTTCCCCCGCAGGCAGGCAGGCAG
GCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGA
Found at i:2774 original size:4 final size:4
Alignment explanation
Indices: 2765--2824 Score: 120
Period size: 4 Copynumber: 15.0 Consensus size: 4
2755 TCTTTCCCCC
2765 GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG
1 GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG GCAG
2813 GCAG GCAG GCAG
1 GCAG GCAG GCAG
2825 AAGGGTGTTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.25, C:0.25, G:0.50, T:0.00
Consensus pattern (4 bp):
GCAG
Left flanking sequence: Indices 2265 -- 2764
GGTCCCAAAAAAAGCAAGACGCAGTTTCGTGTGCAGAAGTTAAGTTAGTTTCTGCGCGAAGCAGA
AGTTTGGAAGCATAAGTTCTTCGCTGCGCTCAGAACAACCCCCGCCAACCCGCAGGCAGAAGTGT
GTTTCTCCGCTGCGCGAAGCAGAAGTTAGTCTCTTGTCCAAAAAGTGTGAACTCCGCCTTTTTTT
GGAGGTCTTCCCCTGGCACGGTAGCTGCGCTCAGAAAGCAAGCGCTTTTGGAAATCCGCAGAAGG
TTCTTTGCTTCGCGCAGCGAAGCAGAAGTTCCAACCTTCTGCGGATTTCCAGCAATTCCCCCGTG
TGAACTTCTGCTTCGCGCAGCTACGCAGAAGCCGGTGCGGATTTCCAAAAGCAGAAGTCTCTTTC
TGAGCGCAGCGGTGAAGGGGAAGGCCCCTCTGCACACAAAGTGTGGTGTTCTTGACGGATTTCCA
AAACAAAACAAAAGTTCGCTTCTGCTTTGAACCACTCTTTCCCCC
Right flanking sequence: Indices 2825 -- 3324
AAGGGTGTTCTCGCGGTGCTCGGTCAAGAACTTCCAACAACCCTTCTGCGCAGAAGGGTTGGGTG
TTCTCGCAGCCCCAACTCCTGGCTCGGTAAAGAACTTCCAAACAACCTTCTGCCTCCGTTTAGCC
CCGCCTCGTACTTCTGCCCCTGGCAAAGTCGGGATCCAAGTTGTCCCACTCGTAACTCCTTCCCT
GTTCTCTTTTATTTTCAGAGGTGGCGAGGGTTGGGTAGTGCTTTGCCGAGGCAATTGACGGATTC
GCACATGCTGCATGGCAGGCAATGGCCCCGGAAGATTTGGTTGCTTACTATTCTTCTTCCCCCGA
TGCATGCCAGGCAAAAGCCGCAGAAAAGAACCAGATCTAGATATTGTTCTTGGCGCGACTGGCGA
TGCATCTATGACATGATCTTGTACCGTTAATCCGACCTTCAGGTTTGGTTGGCTGGGATTGTGCA
CATCAAAGCAGGTATAAATAGATAGAGATGAAGAGATAGTCCGAA
Found at i:7641 original size:5 final size:5
Alignment explanation
Indices: 7631--7661 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
7621 CGCCTTCTGC
7631 AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG A
1 AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG A
7662 AAGCTGCGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.77, T:0.00
Consensus pattern (5 bp):
AGGGG
Left flanking sequence: Indices 7131 -- 7630
CTAAAAAATCCCCTTCCCCTGCGAAACCGGCACTCTTTTTTGTTCACACCTAAAAATCCGTGCCT
ACCTGTTCCCGCACGGGGTAAAGCTGCGCTCATATTTTTGGCAGGCAGGAAATCCGTCAAGCCTG
TAGGGTTCTCCTTCTTCCCCCGCACGGGGGAAAGCTGCGCAGAAGTTCCAACACGCAACACAAGA
AGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTCTGAAGGTTGGTTGTTTGTGGGCCTTCCCC
TGCGCTCGGTAAAGAACACCCTTCTGCAACCAACTGAACCTTTTGCAACCCAACCCGCACTCTTG
CAGGCCTTTGTGATTTCGAAACAACCGCACGGCAGAAGGGTTGCAAGTTTCAAGTTGGTTGCAGA
GCAGAGCTTTTTGGTTCCAAGGTGTGCAGAAGGTCCTCCCCGCAGGCAGGAGTTGCTTGCTTGCT
TGCAGAAGGTTGGGCCCAAAAAAAAGTTGCCTTCCCGCCTTCTGC
Right flanking sequence: Indices 7662 -- 8161
AAGCTGCGCTCATAACTCTTTTTTTGAAATCCGTGCCTGCCCCTTTGTCATTTCGAAACTTTTCG
TGCGGGGCCCCAACCCAAAAAAAAGGTTGTTGGTTGCAGAGCTTTTTGGTTCCAAGGAACTTACT
TTTTAAAAAGGGGCCAACCAAAAAGAGAGTTGCCGTGAACCCGCACGCTTCCCCCGCTGCGCTCA
GAACTCTTTTTTTGAAATCCGTCCTTTGTTTTGTAAAGTAACTTTTTGGGCTTGCCGAACTCTCA
ACACCTTGTTATGGTTATGGTTGTTTCGAAATGACAAAGGACTTAAAAGAAAGTTGCTATCCGTG
CAAGCCTACCTTTGTAACTTTCGAACTTTCTTTCGAACTTTTTGGGCTTGCCGAACTCTCAACAC
CTTGTTATGGTTGTTTCGGAAACTTTTAGCCACAGTCTTCGAAACAACCAGAAAGTTGGAAGTTC
GGCAAGCCCAAAAAGTTCGAAAGAAAGTTCGAAAGAAAGGAAAGA
Found at i:8145 original size:12 final size:12
Alignment explanation
Indices: 8128--8155 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8118 GCAAGCCCAA
8128 AAAGTTCGAAAG
1 AAAGTTCGAAAG
8140 AAAGTTCGAAAG
1 AAAGTTCGAAAG
8152 AAAG
1 AAAG
8156 GAAAGAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.07, G:0.25, T:0.14
Consensus pattern (12 bp):
AAAGTTCGAAAG
Left flanking sequence: Indices 7628 -- 8127
TGCAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAAAGCTGCGCTCATAACTCTTTTTTTGAAATC
CGTGCCTGCCCCTTTGTCATTTCGAAACTTTTCGTGCGGGGCCCCAACCCAAAAAAAAGGTTGTT
GGTTGCAGAGCTTTTTGGTTCCAAGGAACTTACTTTTTAAAAAGGGGCCAACCAAAAAGAGAGTT
GCCGTGAACCCGCACGCTTCCCCCGCTGCGCTCAGAACTCTTTTTTTGAAATCCGTCCTTTGTTT
TGTAAAGTAACTTTTTGGGCTTGCCGAACTCTCAACACCTTGTTATGGTTATGGTTGTTTCGAAA
TGACAAAGGACTTAAAAGAAAGTTGCTATCCGTGCAAGCCTACCTTTGTAACTTTCGAACTTTCT
TTCGAACTTTTTGGGCTTGCCGAACTCTCAACACCTTGTTATGGTTGTTTCGGAAACTTTTAGCC
ACAGTCTTCGAAACAACCAGAAAGTTGGAAGTTCGGCAAGCCCAA
Right flanking sequence: Indices 8156 -- 8655
GAAAGAAAGAAAGAAAGGAATCAAGAAAGTTACAAAGGTAGGCTTGCACGGGGGAGGGGAGGTGT
GAACAAAAAAGAGTGCCAAAATCTCGCAGGGGAAGGGAACTTTTGCTTGCTTGCGAAGGCACACC
TTGGAACCAAAAAGTTCACACGCAACTTCTGCTTCGCTGCGCTCAGATTCAACACGAAGGCCAAC
AAGAACTCTTCCCCGCTACGCGGAGAACACCCTGCCACCTCTGACCTGCGCTCGGTCAAGAACTT
CCAAACAACCTCCTGCAACCAAGGGTAAAAGGTTTACCTTCTGGTTCCCAACCCGGAAGGGGGCA
GAAGGTCAACCCTTTCCCCTTGGTTGGAACTTATGCTTCGCTACGCGAAGAACCAGCCAACCAAC
CGGTCCGGTCAACCCTTCTTTCTTGGTCCTTGGAACAACTGTCTGCTCTGCTCTGCTCTGCAACC
AACTTGAAACTTGCAACCCTTCTGCACCCATTCTTCGTGGCACTC
Found at i:9265 original size:16 final size:16
Alignment explanation
Indices: 9244--9276 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9234 GTCCCGCTTC
9244 TGGCCAACAAACTCAT
1 TGGCCAACAAACTCAT
9260 TGGCCAACAAACTCAT
1 TGGCCAACAAACTCAT
9276 T
1 T
9277 CTTCGACACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.30, G:0.12, T:0.21
Consensus pattern (16 bp):
TGGCCAACAAACTCAT
Left flanking sequence: Indices 8744 -- 9243
TGCCAAAAACGGCCGGAGAACCCCCTCTGGGGGAAAACCTGCGCTCGGAGAACTTCTGCACATGC
CTGCTACCTCTGGAACCCGCAAAAAATCCCCGCTGCACATTTTTTTGTAGGTCCAAAAAAAAGGT
ATGTGCAGAAGGGTGTTCTCCGAGCGCAGGGGTAACTTCTGCGAGGAACTCTTGGATCTTTCTTG
CTTCTCCCCTCCCCGCTGCGCGAAGATTCAACCTTTTGGCAGAAGAACTTCTGCAAACCCCGGAG
GGGAGAACCCCTGCGCTCAGAACCTTTTTTTTTGCCGCCAACCCGCATAAGTTCTTGCTGCGCTC
AGGTTTTTTTGTAGGTATGAACCTTCGCTTCGCTGCGCTCAGCAAAGGTTTAAAGGACTTTTGCG
CGCGCGGTGTGGCAAGTCGGGATCCAAGGAACCACTCTCCCTCCCTCCTTCCCTCATTCTGGGCC
ACTTTAAGAGTTGCACGAATTGCAAGTTGCTTTAAGTCCCGCTTC
Right flanking sequence: Indices 9277 -- 9776
CTTCGACACGAGTGCAAAAGGCCCTTCCCCCGTGCCTACCTTTGTCACTTTTTGGGCTTGCGTTT
CCTTCGCTTCGCTGCGCGAAGCAACCTTTTCCCCTGGGCTGGGTTGTTCCCGCTGCGCACAAACA
ACCTTTCTTGGTCCAAAAAGAACTTACTTTTCCCCGCTGCGCTCAGATAGCTTTTTTGGAGTTCC
AACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTTGGGTTGGTTTCTGCGCGAAGAAGCATAAG
TTTCAAACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACCTTTTTGGAGTTCCAAAAAG
TGTGCAGAAGGGTTGGGTTGGTTTCTGCGAAACCGGCACTCTTTTTTTGTAGGTGTGAACCCGCA
CGCAAGCAACTTTTGCCCAGCCGTTCACATGCTTGGAGAAACCAACACGCAACCCAAGAAGTTTG
TGTGAACTTCTGCTCTCTCTTATATCCCTCTTCAGGTTGGTTGTT
Found at i:10211 original size:37 final size:37
Alignment explanation
Indices: 10161--10239 Score: 158
Period size: 37 Copynumber: 2.1 Consensus size: 37
10151 CAGAGGAAAA
10161 AGGGAAGACCGGGATCTCATTTCAGAGTAATAGTAAG
1 AGGGAAGACCGGGATCTCATTTCAGAGTAATAGTAAG
10198 AGGGAAGACCGGGATCTCATTTCAGAGTAATAGTAAG
1 AGGGAAGACCGGGATCTCATTTCAGAGTAATAGTAAG
10235 AGGGA
1 AGGGA
10240 GTAGCGCTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (37 bp):
AGGGAAGACCGGGATCTCATTTCAGAGTAATAGTAAG
Left flanking sequence: Indices 9661 -- 10160
CCCGCACGCAAGCAACTTTTGCCCAGCCGTTCACATGCTTGGAGAAACCAACACGCAACCCAAGA
AGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTCTTCAGGTTGGTTGTTTGTGGGGAAAAGTT
ACCCCTGCGCTCGGTAAAGAACACCCTTCTGCAACCCGCACTCTTCTTTTCGGATTTCCGGCACG
GATTACTGCCAGCCACAAACTTTTGCACGAAAAGTTTCGAATGAAAACAGTTAATCACGCTTTTG
CACTTTTATTTTCTTTTAGAAGTGCCAGGGCCTTGGCTGAGCGCAGCGAAGGGAGAATTCTCTAA
GTGGATGGAAAGCAGGTAGAAATCGGTTTTGAAAGTCCACGTTGAAAGGGGGCCGGCTGGCCCCC
CGTATCTGGTCCCGCCCCCTTTCAGAGGAATATAAGAGGGGGGGAGAGTGGATGGCCGGTCCCGC
CTAAAACTCTCATAACCTCGGTCCGTACGGCACTTCAGAGGAAAA
Right flanking sequence: Indices 10240 -- 10739
GTAGCGCTTTCTCTGTCCACTCCTCTATATCAAAGTCGTGATTTACCAACCGGTAAAGCCAAGTC
AGAAGTAGCGCAGAACAGCTATAAAGCTGCTTTCCGTGATTGACACAGCTTTAATTAAAATACTT
TTAAAGGTCAATCACGTATATAGAGAAAGCGCTACTCCCCACTCAACTTGGATACCCAGGATTGA
TTTCAAGTCTTGGAGCGCTTTCTCCGTGCGGGGGAAGCGCGGCAGGCTGCTTTAAAGCCGGGCCT
TGGGGGAAGACAACTTGGATCCCTACTTTGTCAGGCCGCGGTGCGGGGGAAGCGCGGCCGGATAT
TCGGTCGGCCGCGTGATTGGCACAGCTTTCAAAGGCTGAAGCTCTTTTAAAGCTTGGTCAATCAC
GGCTGCGGGAATATAGAGGGTGTATTGAAAGCGCTACTTCTAACCACCCAACTTGGATCCCCTTG
GCTTTCTCTATATACGTTCATATCTTGAACGGAGACTTACTTCAA
Found at i:12065 original size:5 final size:5
Alignment explanation
Indices: 12055--12088 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
12045 AGAGTTCCCG
12055 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGG
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGG
12089 CCCCTGCCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.82, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 11555 -- 12054
GAGAACTTACACCCTTCTGCACATACAGTTGCAGAAGGCACATACCTTGACCGAGCGCAGGGCCG
TTCCTCTCTCTTATATCCCTCTGAAGTTTGTGAGGAGAACCCCTCGGTAAAGGCACATACCTGGG
GAAGAGGTGGGAAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTCAAGGCACATAC
CTCCCTGCCACCTCTTCAAAACCCTGCGCTCGGTCAAGGTATTACCTGCCACCTCTTCAAAACCC
TGCGCTCGGTCAAGGCACATACCTCCTCTGGCCCGCCGGGTTCGCTTTGCGAAGCGCCGTTCCTC
GGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAATAACTTCTGCACATACCTCAAACTTTCAAACT
ACGAGCGCGGTCCGGGATCTTTTTGCTAGCTTCTCCCCTCCCCGCTGCGCGAAGATTCAACTTTC
TTGGTTCCAAGCTAGCAACTTTTTGCAGCAAGCAAAGAGTTCCCG
Right flanking sequence: Indices 12089 -- 12588
CCCCTGCCACCTCGCAGGGTCAAAGTTACCCCTGCGCTCGGAGAACACCCTTCTGCACATGCCTG
CCACCTCTGGAACCCGCTGCGCTCAGACTTTCACACCTTTAAATTCGTGCCACGTGCAAAAAAAG
TTAGCGATTACTGTTGCGAAGAGGCCACTTTTTTTTTAAAGTGGCACTCATTCAGTTCTCGTGGC
ACTCATTCAGTTCTCGAATGAGTGCCTTAAATCCGTGCCTAAAAGTTGTGGAAACTTTTCGGCAC
GGCAGAAGTTCACACTTTTTGGAACCAAAACTCCTGCTTCCAAAAAGCAAGCAGAAGTTTTAAAC
TCCTGCTTCTTCGCGCAGGGGCTTCTGCGAACTTATGCTTCCAAAAAGGGCAGCAAAAGGTTGTT
GGTTGTTTGGAAGTTCTTGACCGAGCGCAGCGAGAACAACCTTCTGCCTGCGCTGCGGGAACTCC
TCTCCTTTTAAGGTTGTTTGAAAGCAGAAGAGGCCCCCTTCTTTG
Found at i:12284 original size:20 final size:20
Alignment explanation
Indices: 12259--12299 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
12249 TTTTTTTAAA
12259 GTGGCACTCATTCAGTTCTC
1 GTGGCACTCATTCAGTTCTC
12279 GTGGCACTCATTCAGTTCTC
1 GTGGCACTCATTCAGTTCTC
12299 G
1 G
12300 AATGAGTGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.29, G:0.22, T:0.34
Consensus pattern (20 bp):
GTGGCACTCATTCAGTTCTC
Left flanking sequence: Indices 11759 -- 12258
ACCTCTTCAAAACCCTGCGCTCGGTCAAGGTATTACCTGCCACCTCTTCAAAACCCTGCGCTCGG
TCAAGGCACATACCTCCTCTGGCCCGCCGGGTTCGCTTTGCGAAGCGCCGTTCCTCGGAGGGGAG
GGGAGAACCCCTGCGCTCGGTAAATAACTTCTGCACATACCTCAAACTTTCAAACTACGAGCGCG
GTCCGGGATCTTTTTGCTAGCTTCTCCCCTCCCCGCTGCGCGAAGATTCAACTTTCTTGGTTCCA
AGCTAGCAACTTTTTGCAGCAAGCAAAGAGTTCCCGGGGGAGGGGAGGGGAGGGGAGGGGAGGGG
AGGGGCCCCTGCCACCTCGCAGGGTCAAAGTTACCCCTGCGCTCGGAGAACACCCTTCTGCACAT
GCCTGCCACCTCTGGAACCCGCTGCGCTCAGACTTTCACACCTTTAAATTCGTGCCACGTGCAAA
AAAAGTTAGCGATTACTGTTGCGAAGAGGCCACTTTTTTTTTAAA
Right flanking sequence: Indices 12300 -- 12799
AATGAGTGCCTTAAATCCGTGCCTAAAAGTTGTGGAAACTTTTCGGCACGGCAGAAGTTCACACT
TTTTGGAACCAAAACTCCTGCTTCCAAAAAGCAAGCAGAAGTTTTAAACTCCTGCTTCTTCGCGC
AGGGGCTTCTGCGAACTTATGCTTCCAAAAAGGGCAGCAAAAGGTTGTTGGTTGTTTGGAAGTTC
TTGACCGAGCGCAGCGAGAACAACCTTCTGCCTGCGCTGCGGGAACTCCTCTCCTTTTAAGGTTG
TTTGAAAGCAGAAGAGGCCCCCTTCTTTGGTTGTTTGTTGTTTCCGCAGCATAAGTTTCAAACAA
CCAACAACGCAGAAGTTCCAACCAGAAGGCCTTCTGCACACTTTTTGGAACCAAGAAGTTAGTAT
CTTCTGCTTACAAAAGAACGCGCAGCAGAAGATCTCTGCTCTGCTTTCAAACAACCAACAACCTT
TTGCCAACCTTCTGCACACGGCATTGAACACCCCAAACAAACAAC
Found at i:13479 original size:4 final size:4
Alignment explanation
Indices: 13472--13505 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
13462 TCCTTCCTTT
13472 TTGC TTGC TTGC TTGC -T-C TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
13506 AGAAGGTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 1 0.04
3 2 0.07
4 25 0.89
ACGTcount: A:0.00, C:0.26, G:0.24, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 12972 -- 13471
TTTTTGAACTTCTGCTTCCAAAAAAATGCGCAGGGGAAGAAGTGAAGGTGTGCATAAGGTTGGTT
GTTTGAATCTGAGCGCAGCTACCGTGAAGGTGTGCCACTTCTTGGGGGAAGGCCCACCCCACAGG
TGTGAACAAAAAAGTCTGAGCGCAGGGGAAGGGCTTGCGAAGGTTCACACCTTTATAAACCCCGT
GCCAGCCAAAAAGCAAGCAGAAGTTTATGCCGCGGGGAAAATAAATAAACTTCTGCTTTGGGAAG
GCAACTTCTTCGGATAAAAGCCACAGTCTTCGTGGCACACCTGAAAGTTAGAACACAAAGTTCTT
CGCTGCGCTCAGAAAGCGCGCGCAACCTTCTGCACACCGGCACGAAAAGGTTGTTTCGAAGTGGC
GGTTGGTTGTTTCGAAATGACAGAAGCTAGCTTGCAACCAACCTTTTTTGCCACAAACAACCTTT
TACACTTCGAAACTTTTCGTGCAGAAGCCCTACCTTCCTTCCTTT
Right flanking sequence: Indices 13506 -- 14005
AGAAGGTTCTTTCCCCTGCAACCCCCGTGCCGTGCCTTCACTTCGCTGCGCTCAGAACCCCGCCA
ACCCGCATAAGTTCCTTGGTCCTTTGTAATTTCGTGGCCGAAAAGTCTCGTTTCGAAAACTGTGG
CTTTTCTCCGAAGCGAAGAAGTTGCCTTCCCAAAGCAGAAGTTTATTTATTTTCCCCGCGGCATA
AACTTCTGCTTGCTTTTTGGCCTTCGCTTTTCCCCGCTGCTTTCGCAGCCGCACTCTTTTTTTGA
AATCCGTCCTTTGTCATTTCGTGGCAAAAGGTTGTTAGTTGGAACGGGTTGGTTGTTTGTTGCAG
AAGTCTCTTTCTTTTCCCCGCTGCGCGAAGAGAAGAACTTCTGCTTTCTTTTTGGAGGTCCAAAA
AAAAGCTAGCAACTTCTGCAACAAACCCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGG
TTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAGGTAAGACCTGA
Found at i:13494 original size:14 final size:14
Alignment explanation
Indices: 13475--13502 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13465 TTCCTTTTTG
13475 CTTGCTTGCTTGCT
1 CTTGCTTGCTTGCT
13489 CTTGCTTGCTTGCT
1 CTTGCTTGCTTGCT
13503 TGCAGAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.29, G:0.21, T:0.50
Consensus pattern (14 bp):
CTTGCTTGCTTGCT
Left flanking sequence: Indices 12975 -- 13474
TTGAACTTCTGCTTCCAAAAAAATGCGCAGGGGAAGAAGTGAAGGTGTGCATAAGGTTGGTTGTT
TGAATCTGAGCGCAGCTACCGTGAAGGTGTGCCACTTCTTGGGGGAAGGCCCACCCCACAGGTGT
GAACAAAAAAGTCTGAGCGCAGGGGAAGGGCTTGCGAAGGTTCACACCTTTATAAACCCCGTGCC
AGCCAAAAAGCAAGCAGAAGTTTATGCCGCGGGGAAAATAAATAAACTTCTGCTTTGGGAAGGCA
ACTTCTTCGGATAAAAGCCACAGTCTTCGTGGCACACCTGAAAGTTAGAACACAAAGTTCTTCGC
TGCGCTCAGAAAGCGCGCGCAACCTTCTGCACACCGGCACGAAAAGGTTGTTTCGAAGTGGCGGT
TGGTTGTTTCGAAATGACAGAAGCTAGCTTGCAACCAACCTTTTTTGCCACAAACAACCTTTTAC
ACTTCGAAACTTTTCGTGCAGAAGCCCTACCTTCCTTCCTTTTTG
Right flanking sequence: Indices 13503 -- 14002
TGCAGAAGGTTCTTTCCCCTGCAACCCCCGTGCCGTGCCTTCACTTCGCTGCGCTCAGAACCCCG
CCAACCCGCATAAGTTCCTTGGTCCTTTGTAATTTCGTGGCCGAAAAGTCTCGTTTCGAAAACTG
TGGCTTTTCTCCGAAGCGAAGAAGTTGCCTTCCCAAAGCAGAAGTTTATTTATTTTCCCCGCGGC
ATAAACTTCTGCTTGCTTTTTGGCCTTCGCTTTTCCCCGCTGCTTTCGCAGCCGCACTCTTTTTT
TGAAATCCGTCCTTTGTCATTTCGTGGCAAAAGGTTGTTAGTTGGAACGGGTTGGTTGTTTGTTG
CAGAAGTCTCTTTCTTTTCCCCGCTGCGCGAAGAGAAGAACTTCTGCTTTCTTTTTGGAGGTCCA
AAAAAAAGCTAGCAACTTCTGCAACAAACCCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGT
TGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAGGTAAGACC
Found at i:14053 original size:79 final size:79
Alignment explanation
Indices: 13922--14076 Score: 310
Period size: 79 Copynumber: 2.0 Consensus size: 79
13912 TGCAACAAAC
13922 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
13987 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
14001 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
14066 CGGTAAAGGTA
66 CGGTAAAGGTA
14077 TTCCCTCCTT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35
Consensus pattern (79 bp):
CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
CGGTAAAGGTAAGA
Left flanking sequence: Indices 13422 -- 13921
CCTTTTACACTTCGAAACTTTTCGTGCAGAAGCCCTACCTTCCTTCCTTTTTGCTTGCTTGCTTG
CTCTTGCTTGCTTGCTTGCAGAAGGTTCTTTCCCCTGCAACCCCCGTGCCGTGCCTTCACTTCGC
TGCGCTCAGAACCCCGCCAACCCGCATAAGTTCCTTGGTCCTTTGTAATTTCGTGGCCGAAAAGT
CTCGTTTCGAAAACTGTGGCTTTTCTCCGAAGCGAAGAAGTTGCCTTCCCAAAGCAGAAGTTTAT
TTATTTTCCCCGCGGCATAAACTTCTGCTTGCTTTTTGGCCTTCGCTTTTCCCCGCTGCTTTCGC
AGCCGCACTCTTTTTTTGAAATCCGTCCTTTGTCATTTCGTGGCAAAAGGTTGTTAGTTGGAACG
GGTTGGTTGTTTGTTGCAGAAGTCTCTTTCTTTTCCCCGCTGCGCGAAGAGAAGAACTTCTGCTT
TCTTTTTGGAGGTCCAAAAAAAAGCTAGCAACTTCTGCAACAAAC
Right flanking sequence: Indices 14077 -- 14576
TTCCCTCCTTTCTTGATTTCTTTCTTGATTTCTCTCTTGATTTCTTTAAGAGTGGCACCCTTCTG
CAATGCAACAAACTTCTGCACTCATTCGGGGCCAATCTTAGAAGAATGAGGGCCCTTCCCTTCGT
GCCACTTTTTTTTAAAGTGGCACGTGCGGGAACAGGTTGTTTCGCAGGTAGGCACGGATCCCCGG
GAATATCCGTGCCTTCGCAAGCAACTTTTGCCCAGCCCAGCCCAAAAAGTTCACCTGCACCAACC
GCACTCTTTTTTTGAAATCTGTCCTGTCCTAAAAGGTGTTAAAAGTTGTCGGGATCCAAGGGCCA
AGAAGGTTTGCTTGCGTGAAACTCCTGCTTCGCGCAGCGGCCCCTGAACCTCTCTCTTATATTAC
TCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAGGTAAGACCTGAACCT
CTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCT
Found at i:14101 original size:12 final size:12
Alignment explanation
Indices: 14084--14123 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
14074 GTATTCCCTC
14084 CTTTCTTGATTT
1 CTTTCTTGATTT
14096 CTTTCTTGATTT
1 CTTTCTTGATTT
*
14108 CTCTCTTGATTT
1 CTTTCTTGATTT
14120 CTTT
1 CTTT
14124 AAGAGTGGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.07, C:0.20, G:0.07, T:0.65
Consensus pattern (12 bp):
CTTTCTTGATTT
Left flanking sequence: Indices 13584 -- 14083
CCTTGGTCCTTTGTAATTTCGTGGCCGAAAAGTCTCGTTTCGAAAACTGTGGCTTTTCTCCGAAG
CGAAGAAGTTGCCTTCCCAAAGCAGAAGTTTATTTATTTTCCCCGCGGCATAAACTTCTGCTTGC
TTTTTGGCCTTCGCTTTTCCCCGCTGCTTTCGCAGCCGCACTCTTTTTTTGAAATCCGTCCTTTG
TCATTTCGTGGCAAAAGGTTGTTAGTTGGAACGGGTTGGTTGTTTGTTGCAGAAGTCTCTTTCTT
TTCCCCGCTGCGCGAAGAGAAGAACTTCTGCTTTCTTTTTGGAGGTCCAAAAAAAAGCTAGCAAC
TTCTGCAACAAACCCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCC
CTTCCCCTGCGCTCGGTAAAGGTAAGACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTG
GTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAGGTATTCCCTC
Right flanking sequence: Indices 14124 -- 14623
AAGAGTGGCACCCTTCTGCAATGCAACAAACTTCTGCACTCATTCGGGGCCAATCTTAGAAGAAT
GAGGGCCCTTCCCTTCGTGCCACTTTTTTTTAAAGTGGCACGTGCGGGAACAGGTTGTTTCGCAG
GTAGGCACGGATCCCCGGGAATATCCGTGCCTTCGCAAGCAACTTTTGCCCAGCCCAGCCCAAAA
AGTTCACCTGCACCAACCGCACTCTTTTTTTGAAATCTGTCCTGTCCTAAAAGGTGTTAAAAGTT
GTCGGGATCCAAGGGCCAAGAAGGTTTGCTTGCGTGAAACTCCTGCTTCGCGCAGCGGCCCCTGA
ACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTA
AAGGTAAGACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTC
CCCTGCGCTCGGTAAAGGTAAGACCTGAACCTCTCTCTTATATTA
Found at i:14537 original size:79 final size:79
Alignment explanation
Indices: 14444--14680 Score: 474
Period size: 79 Copynumber: 3.0 Consensus size: 79
14434 CGCAGCGGCC
14444 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
14509 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
14523 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
14588 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
14602 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
14667 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
14681 ACTTACTTTT
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 158 1.00
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.34
Consensus pattern (79 bp):
CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
CGGTAAAGGTAAGA
Left flanking sequence: Indices 13944 -- 14443
CTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAGGTAAGACCTGAACC
TCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAG
GTATTCCCTCCTTTCTTGATTTCTTTCTTGATTTCTCTCTTGATTTCTTTAAGAGTGGCACCCTT
CTGCAATGCAACAAACTTCTGCACTCATTCGGGGCCAATCTTAGAAGAATGAGGGCCCTTCCCTT
CGTGCCACTTTTTTTTAAAGTGGCACGTGCGGGAACAGGTTGTTTCGCAGGTAGGCACGGATCCC
CGGGAATATCCGTGCCTTCGCAAGCAACTTTTGCCCAGCCCAGCCCAAAAAGTTCACCTGCACCA
ACCGCACTCTTTTTTTGAAATCTGTCCTGTCCTAAAAGGTGTTAAAAGTTGTCGGGATCCAAGGG
CCAAGAAGGTTTGCTTGCGTGAAACTCCTGCTTCGCGCAGCGGCC
Right flanking sequence: Indices 14681 -- 15180
ACTTACTTTTTGCTGCAAAAAGTTCCCGGGGGCCCCTGCCACCTCCCTCTTATATCCCTCTGAAG
TTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACTTCCAACCTTTTCCCCTGCGTTGGCAG
AAGTCCTTTTCCCGCTGCGCTCAGATTTTTTTTTGTTCACACCTGAACTTATTCCCCTGCGCGAA
GATTCAACCGCTTCCCCCGCCCGCAGGAGTTCTTCGCTGCGCGAAGCAGAAGTTCCTTCTTGCTT
TGTCCAACAAGCAGAAGTTTCTGCGCGAAGCAACCTTTTCCCGCTGGGTCCTTCCAAAAAGCAAC
CAACTTTCAACCTGGGGCCCCTGCACGCACGAAAAGTTTCGAAATTACAAAGGTAGGCCGCCCTT
CACCTCTTCCCCTGCGCTCGGTAAAGGTATTCCCTCCTTTCTTGATTTCTTTCTTGATTTCTCTC
TTGATTTCTTTAAGAGTGGCACCCTTCTGCAATGCAACAAACTTC
Found at i:15124 original size:12 final size:12
Alignment explanation
Indices: 15107--15146 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
15097 GTATTCCCTC
15107 CTTTCTTGATTT
1 CTTTCTTGATTT
15119 CTTTCTTGATTT
1 CTTTCTTGATTT
*
15131 CTCTCTTGATTT
1 CTTTCTTGATTT
15143 CTTT
1 CTTT
15147 AAGAGTGGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.07, C:0.20, G:0.07, T:0.65
Consensus pattern (12 bp):
CTTTCTTGATTT
Left flanking sequence: Indices 14607 -- 15106
ACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTA
AAGGTAAGAACTTACTTTTTGCTGCAAAAAGTTCCCGGGGGCCCCTGCCACCTCCCTCTTATATC
CCTCTGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACTTCCAACCTTTTCCCCTG
CGTTGGCAGAAGTCCTTTTCCCGCTGCGCTCAGATTTTTTTTTGTTCACACCTGAACTTATTCCC
CTGCGCGAAGATTCAACCGCTTCCCCCGCCCGCAGGAGTTCTTCGCTGCGCGAAGCAGAAGTTCC
TTCTTGCTTTGTCCAACAAGCAGAAGTTTCTGCGCGAAGCAACCTTTTCCCGCTGGGTCCTTCCA
AAAAGCAACCAACTTTCAACCTGGGGCCCCTGCACGCACGAAAAGTTTCGAAATTACAAAGGTAG
GCCGCCCTTCACCTCTTCCCCTGCGCTCGGTAAAGGTATTCCCTC
Right flanking sequence: Indices 15147 -- 15646
AAGAGTGGCACCCTTCTGCAATGCAACAAACTTCTGCACTCATTCGGGGCCAATCTTAGAAGAAT
GAGGGCCCTTCCCTTCGTGCCACTTTTTTTTAAAGTGGCACGTGCGGGAACAGGTTGTTTCGCAG
GTAGGCACGGATCCCCGGGAATATCCGTGCCTTCGCAAGCAACTTTTGCCCAGCCCAGCCCAAAA
AGTTCACCTGCACCAACCGCACTCTTTTTTTGAAATCTGTCCTGTCCTAAAAGGTGTTAAAAGTT
GTCGGGATCCAAGGGCCAAGAAGGTTTGCTTGCGTGAAACTCCTGCTTCGCGCAGCGGCCCCTGA
ACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGGAAAACCAACCCCTGCGCTC
GGTAAAGGTATTCCCTCGGAGAACCCCTGCGCTCGGTAAAGGTATTACCTGCGGTTTGCTTGCGT
GTTGAATCTTCGCGCAGGAGCAGAAGCCTTCTGCGGATTTCCAGC
Found at i:17224 original size:36 final size:36
Alignment explanation
Indices: 17177--17274 Score: 196
Period size: 36 Copynumber: 2.7 Consensus size: 36
17167 TCGCTTTCCC
17177 GCGCGAAGATTCTTTTCTTTTGGAAGCAGAAGTGCT
1 GCGCGAAGATTCTTTTCTTTTGGAAGCAGAAGTGCT
17213 GCGCGAAGATTCTTTTCTTTTGGAAGCAGAAGTGCT
1 GCGCGAAGATTCTTTTCTTTTGGAAGCAGAAGTGCT
17249 GCGCGAAGATTCTTTTCTTTTGGAAG
1 GCGCGAAGATTCTTTTCTTTTGGAAG
17275 TCCAAAAAGC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 62 1.00
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35
Consensus pattern (36 bp):
GCGCGAAGATTCTTTTCTTTTGGAAGCAGAAGTGCT
Left flanking sequence: Indices 16677 -- 17176
AAAAAACAGTTGTGGGGGAAGACAACTTGGATCCCTACTTTTGCGCGCGCGCAAAAGGTTGCAAC
TTATTGGCTGGCCCTTCAGACATCCTTCGTGCCTAAACATGAGTGCCAATGAAGTTTGCTGTTAC
CGGGCCACTTTAAAAGTGGCTAAGCATCCGTGCCGTTCTTTGCTGCGAAACAACCCAACCCAACT
TTTAACCACGCCCCGCCCCCAACCCAACCCGCACTCTTTTTTTGAAATATGTCCTTCACTCCGGA
GAACCCCTGCGCGAAGCAGAAGTTCACACCAACCCTTCTTGCTTTGTCCAACAAGAACGGCACCT
TTTCTTTTGGCACGGGGGAAAGCTGCGCGAAGCAGAAGTTCTTTTCCCCGCTGCGCTCAGATTCA
ACCTTTTCCCCTTGGCTTGGCAGAAGTGTGTTTCTTCGCTGCGAAAACTTCTGCTACTTTCTTTT
TGGAGGTCTTCCCCAACTTTAAAGCAGAGGTTTCTTCGCTTTCCC
Right flanking sequence: Indices 17275 -- 17774
TCCAAAAAGCGGTGTTGCAGAAGAAGCAGAAGAGACTTCTGCTTCGCTGCGCATTCTTTTGGAGG
TCTTCCCCAACTGCCAACCGCAAAAGTTGCTTAGCTGCGCTCAGATTCTTTTGTTCACACCTTTG
GGGAAGGGCCTTCCCCCACCCCACCCAAGAAGTGGCCGAAAAGGTTGGTTGTTTCGAAGAGGATC
CGTGCCTAACCTAAAAGGTGTGGCAAGTCGGGATCCAAGGGCCAAGAAGGTTTGCTTGCGTGAAA
CTCCTGCTTCGCGCAGCGGCCCCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTT
TGTGGGGAAAACCAACCCCTGCGCTCGGTAAAGGTATTCCCTCGGAGAACCCCTGCGCTCGGTAA
AGGTATTACCTGCGGTTTGCTTGCGTGTTGAATCTTCGCGCAGGAGCAGAAGCCTTCTGCGGATT
TCCAGCAATTCCCCCGTGTGAACTTCTGCTTCGCGCAGCTACGCA
Found at i:18154 original size:5 final size:5
Alignment explanation
Indices: 18144--18205 Score: 124
Period size: 5 Copynumber: 12.4 Consensus size: 5
18134 CATGTTACCC
18144 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
18194 GGGGA GGGGA GG
1 GGGGA GGGGA GG
18206 AGCTGGCCCA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 17644 -- 18143
GAGAACCCCTGCGCTCGGTAAAGGTATTACCTGCGGTTTGCTTGCGTGTTGAATCTTCGCGCAGG
AGCAGAAGCCTTCTGCGGATTTCCAGCAATTCCCCCGTGTGAACTTCTGCTTCGCGCAGCTACGC
AGAAGCCTTCTGCAAAAGCAGAAGCAGAAGTTTTCGCAGGGGTTTCCCCACAAACAACCTGAAGA
GGGATATAAGAGGGTGGCAGGAGTTCACACCAAACAACCTTCTGGCCGTGCCGAAAGTTCTTTGA
ACCACTCTTTCCCTTCCCCCGGGGTTCTCGCTGCGCTCGGTCAAGGTATTACCTTCATAAATATT
AATCTCATTCGCCCTAGATTTAAGCACTACATGAACGAATTAACCGATTCAGTCTCAAGTACTGA
AGAGCCGGGATTGTCGGTAATTAGAAACCTTATTGAATCCGGGATTCCCATTTCTGAGTTTATCG
AACTTCTTGCCCGAAGAAGCATTACGGGCCCATAACATGTTACCC
Right flanking sequence: Indices 18206 -- 18705
AGCTGGCCCAATTCCAAACTATTATCATGGGGACCCGATTCCTTTGGATCATTTGGAGTATATTA
TGACCCTGAATGTGAAATCTTTAAGATCCGCTAGTATCAAGCTGCGGTCACAAGGTATATCAAAC
TTTATGATGGCCTATCAATCTTACGTGACTACTATGTGTGGAAAGCCTTTCATGATTGGGAAGTC
TCGCTCAGATTTGGGCGAATGCCGGTCGAGTATGAAGGAGAGATGGAAACACTTCAAAGCTTTAC
TCGAGAGCTGTCACACTCTGGGTTTCAATTATTCTTTGCACTACTAAAAAAAAGGATAAAGAGAG
AATGATTATTCTAAATAATTTTAGGAGGTCGGCTTTGAAGCCAGCTGTGTATTCCTTCACTAGGT
CGGTATCGAAGCAAGCTTCTCATACCTTCGAGCTTAACGATATGAAGGCCTTGTTTGACAAGTAC
TGGAATATGCTCGTGGGGGGCTTCTGAAACCAACCTTTACAGGTC
Found at i:22225 original size:14 final size:14
Alignment explanation
Indices: 22206--22235 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22196 TCGAAGTGGC
22206 AAGGCACTCATCCG
1 AAGGCACTCATCCG
*
22220 AAGGCACTCATTCG
1 AAGGCACTCATCCG
22234 AA
1 AA
22236 AACTGTGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (14 bp):
AAGGCACTCATCCG
Left flanking sequence: Indices 21706 -- 22205
ATGGATGGTGGAGCCAAGCCGGTGGAATTGCTTGCCCATAGGGCTGCTTGGGCTGTGCCTGCCTA
TGAGGGCCTGGGGATCCGTGCCTACCTTTGTAAGCGAATGAGTGAACGGGTGCGGTTGTTTCGAA
AAAACCGCACGGCAGAAGCTTGCTTTTTGATTCCAAGGACCAAGAAAGAAGGGTTGACCGGACCG
GTTGGTTGGCTGGTTCTTCGCGTAGGACTTCTGCCTGCTTAAAAGTTGGCAAACCTTCGTGTTGA
ATCTGAGCGCAGCGAAGCAGAAGTTGCGTGTGAACGGACGGATTTCAACACGCACGCTTTAAGTG
CCTGCCTGCCAGTTCCCGCTTGCTTTCTGAGCGCAGCGGTGAAGGGGAAGCAAAAGTTGCTTGCT
TGCGTGCGGGTTCACGGCAACTTTTACGGGGGCCTTCTGCAAGCAAGCAAGCAAAAAGTTCACTC
ATTCGAAGACTGTGGCACGAAGAAAAGGCACTCATTCGAAGTGGC
Right flanking sequence: Indices 22236 -- 22735
AACTGTGTAAAAGGTTGTTTGTGGCAAACTTCTGCCGTGCCTACCTTTGTCATTTCGAATGAGTG
AACTACCGCAGGCAGGCAGGCAGGCAGGAGTTGCTTGCTTGCAGAAGGTTCTTTCCCCTCCCCCG
TGCCTGGCACGGTAGCTGCGCTCAGAACTTTTGGCACTTTTGAGATCCGTCCAAAAAGAACTTAC
TTTTCCCCGGGGAGGGGAGGGGAGGGGAGGGGAGGAGAACCCCTGCGCGTTCTTTTGGAAGCAGA
AGAGACTAACTCCTTGGTTCCAATTTAAAGTGTGCAGAAGAGACTTCTGCTGCGAGATTTTGGCA
GAAGTCTCTTCTGCAACCTTTTTGGTTTGGAAGTCCTAAAAAAAGGGATCTTTCTTGCTCTTCCC
CGCTGCGCGAAGCTCTTCCCAACCTTTCTGGTCCAAAAAGAAGGGGTCTTGCTGCACGAAGCAGA
AGTTCCTTCTGGCCGCCAACCCGTGGCAAAAAGTCTCTTGCTTAA
Found at i:22449 original size:5 final size:5
Alignment explanation
Indices: 22439--22465 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
22429 ACTTTTCCCC
22439 GGGGA GGGGA GGGGA GGGGA GGGGA GG
1 GGGGA GGGGA GGGGA GGGGA GGGGA GG
22466 AGAACCCCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 21939 -- 22438
TTAAAAGTTGGCAAACCTTCGTGTTGAATCTGAGCGCAGCGAAGCAGAAGTTGCGTGTGAACGGA
CGGATTTCAACACGCACGCTTTAAGTGCCTGCCTGCCAGTTCCCGCTTGCTTTCTGAGCGCAGCG
GTGAAGGGGAAGCAAAAGTTGCTTGCTTGCGTGCGGGTTCACGGCAACTTTTACGGGGGCCTTCT
GCAAGCAAGCAAGCAAAAAGTTCACTCATTCGAAGACTGTGGCACGAAGAAAAGGCACTCATTCG
AAGTGGCAAGGCACTCATCCGAAGGCACTCATTCGAAAACTGTGTAAAAGGTTGTTTGTGGCAAA
CTTCTGCCGTGCCTACCTTTGTCATTTCGAATGAGTGAACTACCGCAGGCAGGCAGGCAGGCAGG
AGTTGCTTGCTTGCAGAAGGTTCTTTCCCCTCCCCCGTGCCTGGCACGGTAGCTGCGCTCAGAAC
TTTTGGCACTTTTGAGATCCGTCCAAAAAGAACTTACTTTTCCCC
Right flanking sequence: Indices 22466 -- 22965
AGAACCCCTGCGCGTTCTTTTGGAAGCAGAAGAGACTAACTCCTTGGTTCCAATTTAAAGTGTGC
AGAAGAGACTTCTGCTGCGAGATTTTGGCAGAAGTCTCTTCTGCAACCTTTTTGGTTTGGAAGTC
CTAAAAAAAGGGATCTTTCTTGCTCTTCCCCGCTGCGCGAAGCTCTTCCCAACCTTTCTGGTCCA
AAAAGAAGGGGTCTTGCTGCACGAAGCAGAAGTTCCTTCTGGCCGCCAACCCGTGGCAAAAAGTC
TCTTGCTTAAAGTGTGCAGAAGAATTGTTTGGGCAGAGATCATCTTCTGCTGCGCGAAGCAGAAG
AACTGCAGAAGTTCTTCTGCAACCTGAACTTATTCCCCTGCGCGAAGATTCAACACGCAAGCAAA
CCGCCAACCCTTCTTGGTCCTTTTGGATTGGAGTGGAATACTTGCTTGCTCTCTTTCTTTAATTT
AAAGTGTGCAGAAGAATTGTTTGGGCAGAGATCTTCTGCTGCGCG
Found at i:24666 original size:34 final size:34
Alignment explanation
Indices: 24581--24689 Score: 128
Period size: 34 Copynumber: 3.0 Consensus size: 34
24571 CCGGCCCTGA
24581 ACCTCTTCCCCTGCGCTCGGTAAGGGTAAGACCTT
1 ACCTCTTCCCCTGCGCTCGGTAAGGGTAAGACC-T
* **
24616 CGCCTCGGAGAACCCCTGCGCTCGGTAAGGGTAAGACCT
1 -ACCTC----TTCCCCTGCGCTCGGTAAGGGTAAGACCT
*
24655 ACCTCTTCCCCTGCGCTCGGTAAAGGTAAGACCT
1 ACCTCTTCCCCTGCGCTCGGTAAGGGTAAGACCT
24689 A
1 A
24690 GAGGGCCTTG
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
34 27 0.44
36 4 0.06
38 4 0.06
39 1 0.02
40 26 0.42
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.21
Consensus pattern (34 bp):
ACCTCTTCCCCTGCGCTCGGTAAGGGTAAGACCT
Left flanking sequence: Indices 24081 -- 24580
CTTCTTCCCGCTGTGCTCAGAAAAAGTTTGCGGGTAGTTTGGTGAATAGAGCCATAGCCACTGAT
ACGGTATCGCTCAAGGCCGCTAGGCCAGTCACTTAACGCTCTAGGCAGGCGGCCAAGGTATGTAT
TCCCGAGCTCGAGGATTGCTTCACTGATCGCTCCACTCGGGGGAGGGGAGGAGCGCTTGCCGTGT
TTAAAGCGCAATCCCGGCTCCGCTTTCCTCACTCAAGCGATTGCTTCCCAATCGCTCCACTCAGG
CTACAGCCTAGGCAATCCCGAGCTACGCTTCCCCCGTCGTCGTCTATTTTACATCCACCCAATGG
CTGGCAGACTGATGAGTGTGACGTGCATGTAGTCTCGTCTATCTCATCGTACACCCAAAGACTAG
CGTACGCATCATTGAAAGCAAAGCCCTTGCTCGCGGTCTTCTGATTGTTGAGAAATGAGATGAAG
TGAATAGAATGGGAACCTAACCGGTCAAGTCCCCGCCGGCCCTGA
Right flanking sequence: Indices 24690 -- 25189
GAGGGCCTTGGCAGCCCGGGGCCAGGCAGAAAAAGCCAAGCTTCATCCATAACAAACTCCCATTA
ATACCAAGCACAGACCCAAGGAACTTCTGCCTGCCTTTGGAATTGAAAATAAATCGACCATTATC
ACCCCATCTTACCATTCATAAGCCACAGCTTACTTCGACCCCCTCTATTTTCCATAGAATCTCCG
GGGCGTTCTCAGCCACTATGGTGTTGGTTAGTCTTCTTTCCTCAAAAGTAGGTCATCTTAGCCTT
ACTTCTGAGAATTATTACCGATATGCTTTTTCTTTGACCAACGATCTTCATTGGTTAATTCTAAG
CTTAGTCAATTCAACTTTATCAGCCTTATGCTATCATATGAGTAATGGAGTTCGTCATTTATGGT
GGGATTTGGGTTTTGTTCTGGATTTATCTCGAGTGTATACTTCCGGAATTCTGATGTTATTCCGT
GCAGCTCGTCCAGCCTTCATGAACCTTTTCCGATTCTTTCGCCTA
Found at i:26190 original size:49 final size:47
Alignment explanation
Indices: 26062--26224 Score: 267
Period size: 47 Copynumber: 3.4 Consensus size: 47
26052 AAACCCTCTC
*
26062 CGCAGAAGG-GCTGCGCTCGGCCCTTCTGCACATACGCAGAAGTTCT
1 CGCAGAAGGCCCTGCGCTCGGCCCTTCTGCACATACGCAGAAGTTCT
*
26108 CGCAGAAGGGCCTGCGCTCGGCCCTTCTGCACATACGCAGAAGTTCT
1 CGCAGAAGGCCCTGCGCTCGGCCCTTCTGCACATACGCAGAAGTTCT
26155 CGCAGGTGAA-GCCCTGCGCTCGGCCCTTCTGCACATACGCAGAAGTTCT
1 CGCA---GAAGGCCCTGCGCTCGGCCCTTCTGCACATACGCAGAAGTTCT
26204 CGCAGAAGGCCCTGCGCTCGG
1 CGCAGAAGGCCCTGCGCTCGG
26225 TAAAGGTATG
Statistics
Matches: 110, Mismatches: 2, Indels: 9
0.91 0.02 0.07
Matches are distributed among these distances:
46 12 0.11
47 53 0.48
49 42 0.38
50 3 0.03
ACGTcount: A:0.18, C:0.34, G:0.29, T:0.18
Consensus pattern (47 bp):
CGCAGAAGGCCCTGCGCTCGGCCCTTCTGCACATACGCAGAAGTTCT
Left flanking sequence: Indices 25562 -- 26061
CATGCGGTTCGGAGAGCGCTTGAGTCATTTCGTGTTCAGAGTGAGGCCCGGCTCTCGTCTTTTTA
TGATGTTTATGCATGACTGGTTATCTACGGGGATTTGTGTAAACACCTGGCACACGCACACTTCA
CAGATAGATATCAGCTAAGGGAGTTATAATAGCTCAATCTTCTTCTTCCCTTAAAGTTGGTTGCT
CAATCCCAGCAGGTATGTGCAGAAGTTCTCCGAGCGCAGGGGTTATCCGAGGAACTTCTTGCTGG
CTTCGCCCTCCCCCGATCTGCTCTCCGGGGGAAAGCTCTTTGGATCAAGTGGTGGCTTGTTTCCC
TTCTCTCCTACGAGGGGGGATATTGGGTTCCCTGTCCCCACGAATAAATAAGGGGGGGTGGAGTG
CACTAATTCCTTAGCATGTGCTAGCGATCTAATTCTCTGAGGTTTCTACCTAAGATTGAGTAATA
AGCTACGTGAGGTTGTCCTTAGATTCGGCCTTTGAAAACCCTCTC
Right flanking sequence: Indices 26225 -- 26724
TAAAGGTATGTGCCTTAACGGTAGCTGCGCAGAAGAACTTGCTTTTTACAACCCGCACTCTTTTT
TGACGGATTTCCTGGCACGGGGGAAAGCTGCGCAGAAGTTCAAACAACCAACTGAACCCCCAACC
CGCACTCTTTTTTGACGGATTTCCTCGGCCAGCGCCGCAGGTGCGTCGAGTGGTTCCCCGGTTTT
AAGAACTTTTAAAGGGGCGAGTGGATGGGGCCTGCCAGGGCAAACGGCAAACGGTCGAGTGTCTG
GCCTGGGTGCCGGGCATTCGTGCAAACTGTTAATTCGAATGAGTGAACGGGCCTTCCCTTCGCTT
CGCTGCGCTCAGAACAACTTTCTTGGCCCAACTTGCTTGCTTGCTCTCTTTAAAGTGTGCAGAAG
TTCTGCGCGAAGCAGAAGTTTTAAATCCGTCGCAGAAGTTCTCTTCCCCGGGGAGGGGAGGGGAG
GGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAG
Found at i:26674 original size:5 final size:5
Alignment explanation
Indices: 26664--26725 Score: 124
Period size: 5 Copynumber: 12.4 Consensus size: 5
26654 TCTCTTCCCC
26664 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
26714 GGGGA GGGGA GG
1 GGGGA GGGGA GG
26726 ACCCCTGCGC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 26164 -- 26663
AGCCCTGCGCTCGGCCCTTCTGCACATACGCAGAAGTTCTCGCAGAAGGCCCTGCGCTCGGTAAA
GGTATGTGCCTTAACGGTAGCTGCGCAGAAGAACTTGCTTTTTACAACCCGCACTCTTTTTTGAC
GGATTTCCTGGCACGGGGGAAAGCTGCGCAGAAGTTCAAACAACCAACTGAACCCCCAACCCGCA
CTCTTTTTTGACGGATTTCCTCGGCCAGCGCCGCAGGTGCGTCGAGTGGTTCCCCGGTTTTAAGA
ACTTTTAAAGGGGCGAGTGGATGGGGCCTGCCAGGGCAAACGGCAAACGGTCGAGTGTCTGGCCT
GGGTGCCGGGCATTCGTGCAAACTGTTAATTCGAATGAGTGAACGGGCCTTCCCTTCGCTTCGCT
GCGCTCAGAACAACTTTCTTGGCCCAACTTGCTTGCTTGCTCTCTTTAAAGTGTGCAGAAGTTCT
GCGCGAAGCAGAAGTTTTAAATCCGTCGCAGAAGTTCTCTTCCCC
Right flanking sequence: Indices 26726 -- 27225
ACCCCTGCGCTCGGTAAAGGCACTTCCCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGT
TTGTGGGGAGAACCCCTGCGCTCGGTAAAGGTAAGACCTTTTTTTTGGTGGGCTTCCAGAAGAAT
CTCGGACCACAACCGAGCATGCCGGCTGCTTTATGCCACTCGACTGAAAGGAGAGGCCCTTCCCC
CCTTTCCATAAGCGTCGAGTGTCCTCGGGGGGAATACCGGGGATCTGAAACGCCTATCCGGCTGA
GCCCTGGCAAAGTCGGATCGCCTTCCCTTAACCTCGCAGGGGAAAAGTTACCCCTGCGCTCGGAG
AACACCCTTCTGCACATACCTGCCACCTCCCTCTTATATCCCTCTGAAGTTTGTGGGGAAAAGGG
TGTTACCCTGCGCTCGGTCAAGAACTTCTGCCTTGTGTTCAGGTGTCAGCAAGTTGTGCGTGTGT
GTAAAGTGGGGAACCTCTATAAGCAGAGTGTCACTGCCAAACTGT
Found at i:28119 original size:21 final size:22
Alignment explanation
Indices: 28088--28130 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
28078 CTGAAGGTTG
*
28088 GTTGTTTGGTTGGAACTTCTGC
1 GTTGTTTGGTTGAAACTTCTGC
28110 GTTG-TTGGTTGAAACTTCTGC
1 GTTGTTTGGTTGAAACTTCTGC
28131 TGCGCGAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.12, C:0.14, G:0.30, T:0.44
Consensus pattern (22 bp):
GTTGTTTGGTTGAAACTTCTGC
Left flanking sequence: Indices 27588 -- 28087
CGTCACGGACGGGAGGGAACTTTTATCACGAAGTGCTTGCTTCTCTATCATCTCCCGCAACAACA
ACCAACTCCATTCGCGTAGCAATTGAAGGCGCAGCAAGAGATTGGCGATTTTAAGTTGTATCCCT
CATCTCTCTGGAAGCCCGAACTTTCGAGGTTCTGTTCAACAACTTTTGCGGGGCGGGTAAAAAGT
TATGAAGAAATGAGATCGCGGGCCCGACAGGAAGCAAGAAGGTGTGAACTTCTGCGTAGCTGCGC
GAAGAACTTCTGCTTTCTTTTTGGAGGTCCGGTCCCGGGTGTGAAGAGCTTGCTTGCTTTTCCCG
CAATAAAAAGTATAAAAGTTCACCTGCTTGGAGAGAAACCAACACGCAACCCGCACTCTTTTTTT
GAAATCCGTCGCAGAAGGCTTCTGCTCTTCCCCTTCCCCTGCGCGGAGAACCGCCCAACTGCCAA
CTTATGCGGGTTGTTTGCAGAAGCAGAAGTCTCTTCTGAAGGTTG
Right flanking sequence: Indices 28131 -- 28630
TGCGCGAAACAGAAGTCTCTGCCCGGTCCAACTTTTAAGCAGAAGCAGAAGTTTCTTCTGAAGGT
TGTTTGGTTGGTTGTTGGAACCTTCTGGAACAAAAAAGTCTGAGCGCAGCAGAAGAACTTCTGTT
CAAACAACCTTCTGCACACTTTTTGGACTTCCAAAAAGCAGGCAGGTGAAAAAAAAGGTTGTTTG
AAACTTCTGCTTCTTCGCGCAGCAAGTGAAGGGACGGGACTTTGCTTCGCGCAGCAGAAGAACTG
CAGAAGTTCTTCTGCACACTTTAAAGAAAGCAAGCAAGCAAGTATTCCACTCCAAACTTCTGCTT
CGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCAAGCAAGCAAGT
TGGGACCAAGAAGTTAGTCTCTTCTGCTTCCAAACGAACGCGCAGCAGAAGATCTTCTGCAAAGA
AGCTTGGTTTGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAG
Found at i:28462 original size:83 final size:85
Alignment explanation
Indices: 28364--28520 Score: 221
Period size: 87 Copynumber: 1.9 Consensus size: 85
28354 AAGGGACGGG
* * *
28364 ACTTTGCTTCGCGCAGCAGA-AGAACTG-CAGA-AGTTCTTCTGCACACTTTAAAGAAAGCAAGC
1 ACTTTGCTTCGCGCAGCAGACACAACTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCAAGC
28426 AAGCAAGTATTCCACTCCAA
66 AAGCAAGTATTCCACTCCAA
* **
28446 ACTTCTGCTTCGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCAA
1 ACTT-TGCTTCGCGCAGCAGAC-ACAACTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCAA
28511 GCAAGCAAGT
64 GCAAGCAAGT
28521 TGGGACCAAG
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
82 4 0.06
83 16 0.25
85 3 0.05
86 3 0.05
87 38 0.59
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (85 bp):
ACTTTGCTTCGCGCAGCAGACACAACTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCAAGC
AAGCAAGTATTCCACTCCAA
Left flanking sequence: Indices 27864 -- 28363
CTTTTTGGAGGTCCGGTCCCGGGTGTGAAGAGCTTGCTTGCTTTTCCCGCAATAAAAAGTATAAA
AGTTCACCTGCTTGGAGAGAAACCAACACGCAACCCGCACTCTTTTTTTGAAATCCGTCGCAGAA
GGCTTCTGCTCTTCCCCTTCCCCTGCGCGGAGAACCGCCCAACTGCCAACTTATGCGGGTTGTTT
GCAGAAGCAGAAGTCTCTTCTGAAGGTTGGTTGTTTGGTTGGAACTTCTGCGTTGTTGGTTGAAA
CTTCTGCTGCGCGAAACAGAAGTCTCTGCCCGGTCCAACTTTTAAGCAGAAGCAGAAGTTTCTTC
TGAAGGTTGTTTGGTTGGTTGTTGGAACCTTCTGGAACAAAAAAGTCTGAGCGCAGCAGAAGAAC
TTCTGTTCAAACAACCTTCTGCACACTTTTTGGACTTCCAAAAAGCAGGCAGGTGAAAAAAAAGG
TTGTTTGAAACTTCTGCTTCTTCGCGCAGCAAGTGAAGGGACGGG
Right flanking sequence: Indices 28521 -- 29020
TGGGACCAAGAAGTTAGTCTCTTCTGCTTCCAAACGAACGCGCAGCAGAAGATCTTCTGCAAAGA
AGCTTGGTTTGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAGGGGTTGGGTTC
TCCGCTCCGCTCCGCTCCGGGGAAGTTCTTTTTGGACGGATTTCAAAAGAGAGTGCCTCGCAGCT
TTCCCCCGGGGAAGAAGGAGAACCCTACAGGTTTGACGGATTTCAAAAGAGAGTGCCGGTTGGTT
TCTCGGTGAACTTTTTGGGCTGGGCAAAAGTTGCTTGCGAAGGTTCTAACAACCTTTTGCCACTT
CTTGGGGGAAGGCCCTTCCCCAAAGGTAGGCAACCAACTTTTACGGAAACAACCTTAAAGAAAGT
TGCCACAGTTTTCGAATGAGTGCGCAGGGCGGGCGCGAACCGGTTGTTTGTTGCTATTCGTGCCT
TTTCCCCCGTGCCAGCCTACCTTTGTAAGCGAAACAACCTGGCAA
Found at i:29601 original size:18 final size:19
Alignment explanation
Indices: 29578--29615 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
29568 AGTCAAGTGG
29578 GGAACCGT-GTCGAGTTCC
1 GGAACCGTAGTCGAGTTCC
*
29596 GGAACCTTAGGTCGAGTTCC
1 GGAACCGTA-GTCGAGTTCC
29616 CAGGAACTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (19 bp):
GGAACCGTAGTCGAGTTCC
Left flanking sequence: Indices 29078 -- 29577
GCCCCTTCCGTGCCTACCTTTGTAAAGTAACTTTTTGGGCTTGCGGTTGGTTGTTTCGCTTACAA
AGGTAGGCTGGCACGGGGTTTAGAAAGGTGTGAACAAAAAAAGAGTGCGGCTGCGAAAGCAGCAG
AAGAATCTGAATAAACTTCTGCCTGCAACACCGCAAACTAACTGCTACCCTCTACAACCCTTTTT
GCCTCCAAAAAGGGTAATGCGCAGCGAAGAAAGAGACTTCTGCCTTTGGGCCGTGTGCAGAAGAA
ACTAACTTCTGCCTCCAGAAGTTCAGCGGAGCGAAGGAACGGAAGAGCTGGGCGGCAATCTCTTG
CTTGCGGCCCACCTGCGGAGGGCTCTGTTTCCGGGCCAATATCCTGCCTGAATCCTGGCTTTGAA
TCGGGGTAAGTGCCGTATAACTTACCTGGGGCGGGGATCCAAGCGCACCCTGAAGGGTAAGTGCC
GTATAACTGACCTGCTTCCGGCCTTCTCCTGCTACAGTCAAGTGG
Right flanking sequence: Indices 29616 -- 30115
CAGGAACTTCAAAAGGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCGCAGGGGTTTGAAAAGGTA
TGTGCAGAAGGGCCGAGCGCAGGGGTTTGAAGAGAACTAGGTCGAGTTAATAACACTTACTTTCT
TTGGCTATATAGATAAGATTCGGAGATAGTGGAAACATCAAACGCGTCGAGTTCTATGTTTCCAC
TATCTCCTATCGAGGGTGCAAGGAAGCAATCCCTAGCTCCGGGTACAACGAAGCAATCCCTATCG
AAGGTACGGAGAAGCAGTTCCAGTGCGGGGGTACAGCGAAGCAATTCCTTCAATTCGTAGGGCAC
AACTTAAAAAAAACGCAATTCCCGCAGTTCCCGCAGGCAGGCAGAATATACTACGAAGTCGATAC
TATAACTCTTCAGTTGCTTATTCCTCATATCCCTTCCCCGGATCTGCTCTCTCGATCGATTCTGA
TTTCTAATGTATTAACCAATCACCCGCAAGCAAGCCCTTCCCCCG
Found at i:31950 original size:9 final size:9
Alignment explanation
Indices: 31928--31993 Score: 59
Period size: 9 Copynumber: 7.4 Consensus size: 9
31918 CTCTTCCCCG
*
31928 GGGAGGGGAG
1 GGGA-GGGAC
31938 GGGAGGGAC
1 GGGAGGGAC
31947 GGGAGGGA-
1 GGGAGGGAC
31955 GGGAGGGA-
1 GGGAGGGAC
31963 -GGACGGGAC
1 GGGA-GGGAC
*
31972 GGGACGGAC
1 GGGAGGGAC
31981 -GGACGGGAC
1 GGGA-GGGAC
31990 GGGA
1 GGGA
31994 CACCAGCCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
7 3 0.06
8 15 0.31
9 20 0.42
10 10 0.21
ACGTcount: A:0.23, C:0.11, G:0.67, T:0.00
Consensus pattern (9 bp):
GGGAGGGAC
Left flanking sequence: Indices 31428 -- 31927
CGCCAGCCACTTTTTATAGTGGCACGAAGGTAGGTTTGAAGGTTAGCCCAGGGGGCCGGGCCACG
CTTACAAAGGTAGGCTGGCACGGATATTGCTTGCTTGCCGGGGATCCGTGCCAGCCTACCTTTGT
AAGCGAATGAGGGAAGAAGGGATAGTGGTTCAAAGCAGAAGTCGGTAGCTGCGCTCAGAACTCTC
TCTATTTTTTGCAGGGTTGCTTGCAGGTCTTCCCCGCAGGGGAGGGGAAAGGAACTTCTGCTCGC
CCTGCGCTCGGAAAACAAACAACCTTCTGCACATACCTGGCTAGCACGGGGGAAAGCTGCGCTCA
GAAAGCAAGCTCGGCACTCTGGCAGGAAATCCGCATAAGGCGTGCGTGTTGGTTGGAACTTCTGC
GTAGCTGCGCGAAGCAGAAGTTCGGGGGAATTGCTGGAAATCCGCAGAAGGCTTCTGCTCCTTCC
CCTGCGCTCAGATTCAACACGAAGGCCAACAAGAACTCTTCCCCG
Right flanking sequence: Indices 31994 -- 32493
CACCAGCCAAACAACCGGTCTTCCCCGCCTGCGCAGGCAGCAGAAGTCTCTTCTGCTACGCGAAG
AACCAGCCAACCCCCCCGCCCAACAAGAACGGCACGGGGGAAGGGAAAGCTGCGCGAAGATTCAA
CCGCTTCCCCCGCAGGCAGGCAGAAGGTTGTTTGAAACTCCTGCCTGCCACCTCTGCCGCTGCGC
GAAGAACACCCTTCTGCCGGCAACCCTCCCGACTTGCCACACGCTTACAAAGATAGGCTGGCACG
GATTATTACAAGGTATGTGCAGAAGTTCCGAGCGCAGGGGTTCTCACTTCAGAGGAATATAAGAG
AGAGGTTCAGGTATGTGCCTTTTTTTTAAAGTTGCAACAAACAACTGAGCTGCACGAAAAGGTTG
TTTCGCAGGTAGGCTGGCACGGATCCCCGCCGAGAAGTGACCCGGCAAAGGGACTCCCAACCTCC
TACTGTCCAATCTTTAGTATCTCCCTACTACTATCGGTTCGGTCG
Found at i:31980 original size:4 final size:5
Alignment explanation
Indices: 31928--31994 Score: 60
Period size: 5 Copynumber: 15.0 Consensus size: 5
31918 CTCTTCCCCG
* *
31928 GGGAG GGGAG GGGA- GGGAC GGGA- GGGA- GGGA- GGGA- -GGAC GGGAC
1 GGGAC GGGAC GGGAC GGGAC GGGAC GGGAC GGGAC GGGAC GGGAC GGGAC
31972 GGGAC -GGAC -GGAC GGGAC GGGAC
1 GGGAC GGGAC GGGAC GGGAC GGGAC
31995 ACCAGCCAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.05
4 24 0.41
5 31 0.53
ACGTcount: A:0.22, C:0.12, G:0.66, T:0.00
Consensus pattern (5 bp):
GGGAC
Left flanking sequence: Indices 31428 -- 31927
CGCCAGCCACTTTTTATAGTGGCACGAAGGTAGGTTTGAAGGTTAGCCCAGGGGGCCGGGCCACG
CTTACAAAGGTAGGCTGGCACGGATATTGCTTGCTTGCCGGGGATCCGTGCCAGCCTACCTTTGT
AAGCGAATGAGGGAAGAAGGGATAGTGGTTCAAAGCAGAAGTCGGTAGCTGCGCTCAGAACTCTC
TCTATTTTTTGCAGGGTTGCTTGCAGGTCTTCCCCGCAGGGGAGGGGAAAGGAACTTCTGCTCGC
CCTGCGCTCGGAAAACAAACAACCTTCTGCACATACCTGGCTAGCACGGGGGAAAGCTGCGCTCA
GAAAGCAAGCTCGGCACTCTGGCAGGAAATCCGCATAAGGCGTGCGTGTTGGTTGGAACTTCTGC
GTAGCTGCGCGAAGCAGAAGTTCGGGGGAATTGCTGGAAATCCGCAGAAGGCTTCTGCTCCTTCC
CCTGCGCTCAGATTCAACACGAAGGCCAACAAGAACTCTTCCCCG
Right flanking sequence: Indices 31995 -- 32494
ACCAGCCAAACAACCGGTCTTCCCCGCCTGCGCAGGCAGCAGAAGTCTCTTCTGCTACGCGAAGA
ACCAGCCAACCCCCCCGCCCAACAAGAACGGCACGGGGGAAGGGAAAGCTGCGCGAAGATTCAAC
CGCTTCCCCCGCAGGCAGGCAGAAGGTTGTTTGAAACTCCTGCCTGCCACCTCTGCCGCTGCGCG
AAGAACACCCTTCTGCCGGCAACCCTCCCGACTTGCCACACGCTTACAAAGATAGGCTGGCACGG
ATTATTACAAGGTATGTGCAGAAGTTCCGAGCGCAGGGGTTCTCACTTCAGAGGAATATAAGAGA
GAGGTTCAGGTATGTGCCTTTTTTTTAAAGTTGCAACAAACAACTGAGCTGCACGAAAAGGTTGT
TTCGCAGGTAGGCTGGCACGGATCCCCGCCGAGAAGTGACCCGGCAAAGGGACTCCCAACCTCCT
ACTGTCCAATCTTTAGTATCTCCCTACTACTATCGGTTCGGTCGA
Found at i:31986 original size:18 final size:18
Alignment explanation
Indices: 31933--31994 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
31923 CCCCGGGGAG
* *
31933 GGGAGGGGAGGGACGGGA-
1 GGGACGGGACGGAC-GGAC
*
31951 GGGA-GGGAGGGA-GGAC
1 GGGACGGGACGGACGGAC
31967 GGGACGGGACGGACGGAC
1 GGGACGGGACGGACGGAC
31985 GGGACGGGAC
1 GGGACGGGAC
31995 ACCAGCCAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
15 3 0.08
16 4 0.10
17 15 0.38
18 18 0.45
ACGTcount: A:0.23, C:0.13, G:0.65, T:0.00
Consensus pattern (18 bp):
GGGACGGGACGGACGGAC
Left flanking sequence: Indices 31433 -- 31932
GCCACTTTTTATAGTGGCACGAAGGTAGGTTTGAAGGTTAGCCCAGGGGGCCGGGCCACGCTTAC
AAAGGTAGGCTGGCACGGATATTGCTTGCTTGCCGGGGATCCGTGCCAGCCTACCTTTGTAAGCG
AATGAGGGAAGAAGGGATAGTGGTTCAAAGCAGAAGTCGGTAGCTGCGCTCAGAACTCTCTCTAT
TTTTTGCAGGGTTGCTTGCAGGTCTTCCCCGCAGGGGAGGGGAAAGGAACTTCTGCTCGCCCTGC
GCTCGGAAAACAAACAACCTTCTGCACATACCTGGCTAGCACGGGGGAAAGCTGCGCTCAGAAAG
CAAGCTCGGCACTCTGGCAGGAAATCCGCATAAGGCGTGCGTGTTGGTTGGAACTTCTGCGTAGC
TGCGCGAAGCAGAAGTTCGGGGGAATTGCTGGAAATCCGCAGAAGGCTTCTGCTCCTTCCCCTGC
GCTCAGATTCAACACGAAGGCCAACAAGAACTCTTCCCCGGGGAG
Right flanking sequence: Indices 31995 -- 32494
ACCAGCCAAACAACCGGTCTTCCCCGCCTGCGCAGGCAGCAGAAGTCTCTTCTGCTACGCGAAGA
ACCAGCCAACCCCCCCGCCCAACAAGAACGGCACGGGGGAAGGGAAAGCTGCGCGAAGATTCAAC
CGCTTCCCCCGCAGGCAGGCAGAAGGTTGTTTGAAACTCCTGCCTGCCACCTCTGCCGCTGCGCG
AAGAACACCCTTCTGCCGGCAACCCTCCCGACTTGCCACACGCTTACAAAGATAGGCTGGCACGG
ATTATTACAAGGTATGTGCAGAAGTTCCGAGCGCAGGGGTTCTCACTTCAGAGGAATATAAGAGA
GAGGTTCAGGTATGTGCCTTTTTTTTAAAGTTGCAACAAACAACTGAGCTGCACGAAAAGGTTGT
TTCGCAGGTAGGCTGGCACGGATCCCCGCCGAGAAGTGACCCGGCAAAGGGACTCCCAACCTCCT
ACTGTCCAATCTTTAGTATCTCCCTACTACTATCGGTTCGGTCGA
Found at i:33082 original size:8 final size:8
Alignment explanation
Indices: 33069--33111 Score: 86
Period size: 8 Copynumber: 5.4 Consensus size: 8
33059 GGATCCCGAC
33069 TTTCTTGA
1 TTTCTTGA
33077 TTTCTTGA
1 TTTCTTGA
33085 TTTCTTGA
1 TTTCTTGA
33093 TTTCTTGA
1 TTTCTTGA
33101 TTTCTTGA
1 TTTCTTGA
33109 TTT
1 TTT
33112 ATTTTAGTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.65
Consensus pattern (8 bp):
TTTCTTGA
Left flanking sequence: Indices 32569 -- 33068
ATTAGTAGACAATTTGGAGACGATCGGATTTGAACCGACAGCTTCATGCTTGCAAAACATGCGCT
CTACCAATTGAACTACGTCCCCGGTTTTATTTTAAATGTTGAATCCACGATACAGTATTGTTGTC
TTTGTCTTTAGGGGTAGGCCCTCTCAAGCTTTCCCCCAATCTTAGGGGAGAGCCGAGTCCGCGGC
TCTTCCAAACCTCGGCAAACCGGCTTGCTTTAACGAGTGTATCCTCCCGGCTAGCACGGTTTAAT
CCCCAGTGGCAAATAAGAGTGGCAGACCCCTCTGCTTCGTGCAAAGCTACCTTCCTACTATTCTC
AGCTCTTATGCTATTACTAAAGCCGCCCTGCGAGTTATAGGCTCGCGATTGGATTTACCAATATA
TCTACGCGCGCACTGCTTGCGGTCTTTACCGCTGGGGCTCCACCGCTCCGCTCCTCCTTCGTATT
TATTTCTAACGAAGGAGTTACGAGTGGGACAACTTGGATCCCGAC
Right flanking sequence: Indices 33112 -- 33611
ATTTTAGTGGTCAATATGAATGGCCAGAAATCGTGTTTCGTCACCCACCCTCTACTTGGATCCCT
TAAAAAAGAGTCCCACCCGGCTTTTGCTTTTTATATCGTCTTCTGCTTCCCCCACAGGCATAAAC
AATCAAGGTTATCGGCAGCGCGGGACTCTATATACTTGAATGTAGTGCTAATCAGTGCTTATCAA
TAGTAAAAGCGTTAGCCCCCGCCGACCGACCTTTAAATCTATCTTCTCCCCTCCCCTCCCCTCCC
CTCCCCCCGTTGGGGAAGAGGCAGCGAAACACCGCCGATTCGCGCGTCTAGTTGCGGGCAGTCTT
TGTCAAGGCTTGCATTTTGTTCGCTCAAGGCGTCGAGGGGGAAAGGGTGGGATACTCTTTTAAAA
GCTCCCGCCGACCCGCTCAAGATGCTCCGTGAGATAATAGTAGGCGGGCGGCCTAGATTCGCACG
TCTACTGGAGGAGGCTACAGCCTTTGAAACTAAAGGACCTGGTTC
Found at i:33362 original size:5 final size:5
Alignment explanation
Indices: 33352--33377 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33342 AATCTATCTT
33352 CTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC C
33378 CCGTTGGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 32852 -- 33351
AGACCCCTCTGCTTCGTGCAAAGCTACCTTCCTACTATTCTCAGCTCTTATGCTATTACTAAAGC
CGCCCTGCGAGTTATAGGCTCGCGATTGGATTTACCAATATATCTACGCGCGCACTGCTTGCGGT
CTTTACCGCTGGGGCTCCACCGCTCCGCTCCTCCTTCGTATTTATTTCTAACGAAGGAGTTACGA
GTGGGACAACTTGGATCCCGACTTTCTTGATTTCTTGATTTCTTGATTTCTTGATTTCTTGATTT
ATTTTAGTGGTCAATATGAATGGCCAGAAATCGTGTTTCGTCACCCACCCTCTACTTGGATCCCT
TAAAAAAGAGTCCCACCCGGCTTTTGCTTTTTATATCGTCTTCTGCTTCCCCCACAGGCATAAAC
AATCAAGGTTATCGGCAGCGCGGGACTCTATATACTTGAATGTAGTGCTAATCAGTGCTTATCAA
TAGTAAAAGCGTTAGCCCCCGCCGACCGACCTTTAAATCTATCTT
Right flanking sequence: Indices 33378 -- 33877
CCGTTGGGGAAGAGGCAGCGAAACACCGCCGATTCGCGCGTCTAGTTGCGGGCAGTCTTTGTCAA
GGCTTGCATTTTGTTCGCTCAAGGCGTCGAGGGGGAAAGGGTGGGATACTCTTTTAAAAGCTCCC
GCCGACCCGCTCAAGATGCTCCGTGAGATAATAGTAGGCGGGCGGCCTAGATTCGCACGTCTACT
GGAGGAGGCTACAGCCTTTGAAACTAAAGGACCTGGTTCTTCGCGCAGCTACGCAGAAGTTCACA
CAAAACAACCTTCTGGCTTGCATCTTGCTTCGCTAAAGGTAGGACGTCGGGTACGAACACGTTGC
GTTCGGGGTTTTCACGTTACAGGGTGACCTCAGGGGGGAAGAGGTACCGGTTTACTTTTCCGTGG
TTAAAAAAGAGGATCAAGGTTGGTTGTTTTTTGAACCGGGAAGAGGTTTGTTTGCCGAAAAGCTG
CTTTTCTTGAAAAAGTGTTGCAGGTGTGAAAAGCTGCTCTCCGAA
Found at i:38876 original size:16 final size:16
Alignment explanation
Indices: 38855--38908 Score: 66
Period size: 16 Copynumber: 3.8 Consensus size: 16
38845 AAGCTCTTCC
38855 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
38871 CTTCCCTT-CC-----
1 CTTCCCTTCCCTGGAA
38881 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
38897 CTTCCCTTCCCT
1 CTTCCCTTCCCT
38909 TTTGGGAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
10 8 0.25
11 2 0.06
15 2 0.06
16 20 0.62
ACGTcount: A:0.07, C:0.50, G:0.07, T:0.35
Consensus pattern (16 bp):
CTTCCCTTCCCTGGAA
Left flanking sequence: Indices 38355 -- 38854
TACTAGCTATAGATTGTGACAGATCGCTTCGTTATTGCTACCCGTTCTCCCGGGCCGATAGGCGG
GGGGCCGGGTGAGAAATCACTGGACCCCGATCAAGTTTCCGACTTTCACTTTCCTCTCCCCCAGC
TCTTCTTCCCCCGGGAAGGGAAGTTCCAGGGAAACATAGCCAAGCGGGGGAAAAGGCGGAGCGGA
TTATTTTCAAAGCACGCACTAGGGGAAGGGAAGGGAGGGGAACCAATAGAAAGAATACAGGCCTG
CGCCGCAACAACTTCATAGTACCCACTGCGCCATGGGGGGAGGACCTTCGCAAGCAACCAAAAGT
TCCCTTCCCTTCCCCTGCGCTCAGAAAGCTAGCTCTTCCCTTTTGGCGCGCGCTTTTGGTTCTTT
TTGGCTGGCTTGTGGGAAATCTGTCCTTCGCTTTTCCCCGCTGCGCTCAGCAATCTTTTTCGGAT
TTGGGTGTGAAGAGCTTGCTTTTCCCCGCTGCGCGAAGCTCTTCC
Right flanking sequence: Indices 38909 -- 39408
TTTGGGAGTTTCAAAAAGTGTGCAGAAGTTAGTTTCTGCGCGAAGCAGAAGAACTTCTTTTCTTC
TGCAACCAACCGCCCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTT
TCTGCGCATTTTTTTGGAGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTC
CCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAACTTC
TCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGCCCAACTTGCTTGCTTG
CTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGTCTTCCCTT
CCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAACTTCTCTTC
GCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCTTT
Found at i:38880 original size:26 final size:26
Alignment explanation
Indices: 38850--38909 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
38840 GCGCGAAGCT
38850 CTTCCCTTCCCTTCCCTGGAACTTCC
1 CTTCCCTTCCCTTCCCTGGAACTTCC
38876 CTTCCCTTCCCTTCCCTGGAACTTCC
1 CTTCCCTTCCCTTCCCTGGAACTTCC
38902 CTTCCCTT
1 CTTCCCTT
38910 TTGGGAGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.07, C:0.50, G:0.07, T:0.37
Consensus pattern (26 bp):
CTTCCCTTCCCTTCCCTGGAACTTCC
Left flanking sequence: Indices 38350 -- 38849
GCCCATACTAGCTATAGATTGTGACAGATCGCTTCGTTATTGCTACCCGTTCTCCCGGGCCGATA
GGCGGGGGGCCGGGTGAGAAATCACTGGACCCCGATCAAGTTTCCGACTTTCACTTTCCTCTCCC
CCAGCTCTTCTTCCCCCGGGAAGGGAAGTTCCAGGGAAACATAGCCAAGCGGGGGAAAAGGCGGA
GCGGATTATTTTCAAAGCACGCACTAGGGGAAGGGAAGGGAGGGGAACCAATAGAAAGAATACAG
GCCTGCGCCGCAACAACTTCATAGTACCCACTGCGCCATGGGGGGAGGACCTTCGCAAGCAACCA
AAAGTTCCCTTCCCTTCCCCTGCGCTCAGAAAGCTAGCTCTTCCCTTTTGGCGCGCGCTTTTGGT
TCTTTTTGGCTGGCTTGTGGGAAATCTGTCCTTCGCTTTTCCCCGCTGCGCTCAGCAATCTTTTT
CGGATTTGGGTGTGAAGAGCTTGCTTTTCCCCGCTGCGCGAAGCT
Right flanking sequence: Indices 38910 -- 39409
TTGGGAGTTTCAAAAAGTGTGCAGAAGTTAGTTTCTGCGCGAAGCAGAAGAACTTCTTTTCTTCT
GCAACCAACCGCCCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTT
CTGCGCATTTTTTTGGAGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCC
CTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAACTTCT
CTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGCCCAACTTGCTTGCTTGC
TTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGTCTTCCCTTC
CCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAACTTCTCTTCG
CTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCTTTT
Found at i:38909 original size:5 final size:5
Alignment explanation
Indices: 38850--38892 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
38840 GCGCGAAGCT
***
38850 CTTCC CTTCC CTTCC CTGGAA CTTCC CTTCC CTTCC CTTCC CT
1 CTTCC CTTCC CTTCC CT-TCC CTTCC CTTCC CTTCC CTTCC CT
38893 GGAACTTCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
5 29 0.94
6 2 0.06
ACGTcount: A:0.05, C:0.53, G:0.05, T:0.37
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 38350 -- 38849
GCCCATACTAGCTATAGATTGTGACAGATCGCTTCGTTATTGCTACCCGTTCTCCCGGGCCGATA
GGCGGGGGGCCGGGTGAGAAATCACTGGACCCCGATCAAGTTTCCGACTTTCACTTTCCTCTCCC
CCAGCTCTTCTTCCCCCGGGAAGGGAAGTTCCAGGGAAACATAGCCAAGCGGGGGAAAAGGCGGA
GCGGATTATTTTCAAAGCACGCACTAGGGGAAGGGAAGGGAGGGGAACCAATAGAAAGAATACAG
GCCTGCGCCGCAACAACTTCATAGTACCCACTGCGCCATGGGGGGAGGACCTTCGCAAGCAACCA
AAAGTTCCCTTCCCTTCCCCTGCGCTCAGAAAGCTAGCTCTTCCCTTTTGGCGCGCGCTTTTGGT
TCTTTTTGGCTGGCTTGTGGGAAATCTGTCCTTCGCTTTTCCCCGCTGCGCTCAGCAATCTTTTT
CGGATTTGGGTGTGAAGAGCTTGCTTTTCCCCGCTGCGCGAAGCT
Right flanking sequence: Indices 38893 -- 39392
GGAACTTCCCTTCCCTTTTGGGAGTTTCAAAAAGTGTGCAGAAGTTAGTTTCTGCGCGAAGCAGA
AGAACTTCTTTTCTTCTGCAACCAACCGCCCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGA
AGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTT
CCCTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCC
AAAAAGAACTAACTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGC
CCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTT
TTGGAGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAA
GAACTAACTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCT
Found at i:39070 original size:5 final size:5
Alignment explanation
Indices: 39060--39151 Score: 148
Period size: 5 Copynumber: 18.2 Consensus size: 5
39050 TTTTGGAGGT
39060 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
***
39110 CTTCC CTGGAA CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC C
1 CTTCC CT-TCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC C
39152 CAAAAAGAAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
5 78 0.98
6 2 0.03
ACGTcount: A:0.02, C:0.58, G:0.02, T:0.38
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 38560 -- 39059
AGCACGCACTAGGGGAAGGGAAGGGAGGGGAACCAATAGAAAGAATACAGGCCTGCGCCGCAACA
ACTTCATAGTACCCACTGCGCCATGGGGGGAGGACCTTCGCAAGCAACCAAAAGTTCCCTTCCCT
TCCCCTGCGCTCAGAAAGCTAGCTCTTCCCTTTTGGCGCGCGCTTTTGGTTCTTTTTGGCTGGCT
TGTGGGAAATCTGTCCTTCGCTTTTCCCCGCTGCGCTCAGCAATCTTTTTCGGATTTGGGTGTGA
AGAGCTTGCTTTTCCCCGCTGCGCGAAGCTCTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTC
CCTTCCCTGGAACTTCCCTTCCCTTTTGGGAGTTTCAAAAAGTGTGCAGAAGTTAGTTTCTGCGC
GAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGCCCAACTTGCTTGCTTGCTTTCTTTAAAG
TGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGT
Right flanking sequence: Indices 39152 -- 39651
CAAAAAGAACTAACTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCG
CCCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTT
TTTGGAGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAA
AGAACTAACTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCTTTTGG
AAGTCCAACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTT
TTGGAGGTCTTCCCCAAAAAGATTTCTTTCTTGATTTCTTTCTTGATTTCTTGATTTCTTTTTTA
AAGTGTGCAGAAGTTAGTTTCTTCGCTGCGCGAAGATTCAACCTTCTTGATCCTGAAAAGTGTTA
AGTTGGAACACAAACTTTTGCTTCGCTGCGCTCAGAACTCTTTTT
Found at i:39301 original size:5 final size:5
Alignment explanation
Indices: 39291--39341 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
39281 TTTTGGAGGT
39291 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
39341 C
1 C
39342 CAAAAAGAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 38791 -- 39290
TCAGCAATCTTTTTCGGATTTGGGTGTGAAGAGCTTGCTTTTCCCCGCTGCGCGAAGCTCTTCCC
TTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTTTGGGAGTTTC
AAAAAGTGTGCAGAAGTTAGTTTCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCG
CCCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTT
TTTGGAGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCC
TGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAACTTCTCTTCGCTGCGC
GAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGCCCAACTTGCTTGCTTGCTTTCTTTAAAG
TGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGT
Right flanking sequence: Indices 39342 -- 39841
CAAAAAGAACTAACTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCT
TTTGGAAGTCCAACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCA
TTTTTTTGGAGGTCTTCCCCAAAAAGATTTCTTTCTTGATTTCTTTCTTGATTTCTTGATTTCTT
TTTTAAAGTGTGCAGAAGTTAGTTTCTTCGCTGCGCGAAGATTCAACCTTCTTGATCCTGAAAAG
TGTTAAGTTGGAACACAAACTTTTGCTTCGCTGCGCTCAGAACTCTTTTTTTGAAATCCGTCCTG
AAAGAGCGTTAGAACCTTCGCAAGCAACCAAAAGTCCCCTTCCCTTCCCCTGCGCTCAGAAAGCA
AGCAAAAAGGACCTTTGTTTGTGTTTTGTTTTGGAAATCCGTCAAGAACACAAACTTTTGCTTCG
CTGCGCTCAGAAAGCAAGCAAGCAAGCAAGCAAAAAGGACCTTTG
Found at i:39426 original size:190 final size:192
Alignment explanation
Indices: 39100--39490 Score: 612
Period size: 190 Copynumber: 2.0 Consensus size: 192
39090 CTTCCCTTCC
39100 CTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAA
1 CTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAA
* *
39165 CTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGCCCAACTTG-C-T
66 CTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGCCCAACGTGCCAA
39228 TGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGT
131 T-CTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGT
***
39291 CTTCCCTTCCCTTCCCT-TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAA
1 CTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAA
****
39355 CTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCTTTTGGAA-GT-CC
66 CTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACC--GCCCAACGTGCC
39418 AACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAG
129 AA--T-CTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAG
39483 GT
191 GT
39485 CTTCCC
1 CTTCCC
39491 CAAAAAGATT
Statistics
Matches: 185, Mismatches: 9, Indels: 9
0.91 0.04 0.04
Matches are distributed among these distances:
190 95 0.51
191 19 0.10
192 2 0.01
194 69 0.37
ACGTcount: A:0.18, C:0.32, G:0.15, T:0.35
Consensus pattern (192 bp):
CTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAA
CTTCTCTTCGCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGCCCAACGTGCCAA
TCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGT
Left flanking sequence: Indices 38600 -- 39099
AAGAATACAGGCCTGCGCCGCAACAACTTCATAGTACCCACTGCGCCATGGGGGGAGGACCTTCG
CAAGCAACCAAAAGTTCCCTTCCCTTCCCCTGCGCTCAGAAAGCTAGCTCTTCCCTTTTGGCGCG
CGCTTTTGGTTCTTTTTGGCTGGCTTGTGGGAAATCTGTCCTTCGCTTTTCCCCGCTGCGCTCAG
CAATCTTTTTCGGATTTGGGTGTGAAGAGCTTGCTTTTCCCCGCTGCGCGAAGCTCTTCCCTTCC
CTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTTTGGGAGTTTCAAAA
AGTGTGCAGAAGTTAGTTTCTGCGCGAAGCAGAAGAACTTCTTTTCTTCTGCAACCAACCGCCCA
ACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTG
GAGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCC
Right flanking sequence: Indices 39491 -- 39990
CAAAAAGATTTCTTTCTTGATTTCTTTCTTGATTTCTTGATTTCTTTTTTAAAGTGTGCAGAAGT
TAGTTTCTTCGCTGCGCGAAGATTCAACCTTCTTGATCCTGAAAAGTGTTAAGTTGGAACACAAA
CTTTTGCTTCGCTGCGCTCAGAACTCTTTTTTTGAAATCCGTCCTGAAAGAGCGTTAGAACCTTC
GCAAGCAACCAAAAGTCCCCTTCCCTTCCCCTGCGCTCAGAAAGCAAGCAAAAAGGACCTTTGTT
TGTGTTTTGTTTTGGAAATCCGTCAAGAACACAAACTTTTGCTTCGCTGCGCTCAGAAAGCAAGC
AAGCAAGCAAGCAAAAAGGACCTTTGTTTTGGAAATCCGTCAAGAACTTCTTCGCTGCGCTCAGA
AAGCAAGCGCTTTTGGTTCTTTGTGAACGTGATAAAAAAAAGTGTGGCAAGAGGGAATAAGTTTG
TTTTGTTTGTTTGTGCCACTGAAATTACTTACAAAGGTAGGCTGC
Found at i:39514 original size:12 final size:12
Alignment explanation
Indices: 39497--39528 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
39487 TCCCCAAAAA
39497 GATTTCTTTCTT
1 GATTTCTTTCTT
39509 GATTTCTTTCTT
1 GATTTCTTTCTT
39521 GATTTCTT
1 GATTTCTT
39529 GATTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.09, T:0.66
Consensus pattern (12 bp):
GATTTCTTTCTT
Left flanking sequence: Indices 38997 -- 39496
TGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGTCT
TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCCC
TTCCCTTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAACTTCTCTTCGCTGCGCGAAGCAGAAGA
ACTTCTTTTCTTCTGCAACCAACCGCCCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGG
TTGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCC
TTCCCTTCCCTTCCCTTCCCCAAAAAGAACTAACTTCTCTTCGCTGCGCGAAGCAGAAGAACTTC
TTTTCTTCTGCAACCAACCTTTTGGAAGTCCAACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGT
TGAAAGTTAGTTTCTGCGCATTTTTTTGGAGGTCTTCCCCAAAAA
Right flanking sequence: Indices 39529 -- 40028
GATTTCTTTTTTAAAGTGTGCAGAAGTTAGTTTCTTCGCTGCGCGAAGATTCAACCTTCTTGATC
CTGAAAAGTGTTAAGTTGGAACACAAACTTTTGCTTCGCTGCGCTCAGAACTCTTTTTTTGAAAT
CCGTCCTGAAAGAGCGTTAGAACCTTCGCAAGCAACCAAAAGTCCCCTTCCCTTCCCCTGCGCTC
AGAAAGCAAGCAAAAAGGACCTTTGTTTGTGTTTTGTTTTGGAAATCCGTCAAGAACACAAACTT
TTGCTTCGCTGCGCTCAGAAAGCAAGCAAGCAAGCAAGCAAAAAGGACCTTTGTTTTGGAAATCC
GTCAAGAACTTCTTCGCTGCGCTCAGAAAGCAAGCGCTTTTGGTTCTTTGTGAACGTGATAAAAA
AAAGTGTGGCAAGAGGGAATAAGTTTGTTTTGTTTGTTTGTGCCACTGAAATTACTTACAAAGGT
AGGCTGCCAGAAATCCGTGCCTACCTTTGGGGAAGGGCCCCAAGA
Found at i:40388 original size:22 final size:24
Alignment explanation
Indices: 40345--40392 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 24
40335 CGTAAAGCCC
*
40345 ACATTCATTCCTGACTTCCGTAAA
1 ACATTCATTCCTCACTTCCGTAAA
40369 ACATTCATTCC-CA-TTCCGTAAA
1 ACATTCATTCCTCACTTCCGTAAA
40391 AC
1 AC
40393 CTTCCTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.48
23 1 0.04
24 11 0.48
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.31
Consensus pattern (24 bp):
ACATTCATTCCTCACTTCCGTAAA
Left flanking sequence: Indices 39845 -- 40344
TGGAAATCCGTCAAGAACTTCTTCGCTGCGCTCAGAAAGCAAGCGCTTTTGGTTCTTTGTGAACG
TGATAAAAAAAAGTGTGGCAAGAGGGAATAAGTTTGTTTTGTTTGTTTGTGCCACTGAAATTACT
TACAAAGGTAGGCTGCCAGAAATCCGTGCCTACCTTTGGGGAAGGGCCCCAAGAAGTGGCACTCA
TTGGCCCGGTAAGTTTCGCACTCATGTATTTAGGCACACAAGGGGTAAGTCCTTGGATCCCCCCT
GCCGGCTTACCTCCTCAGAGGAATAGTTCTCCGGGGGACTCCTTGGATCTCCTACCCTATAAGTT
CCTCCAAACATCTTTATTCTTTTATCGATAACAATCTCGAAAGACAGACTATCTATGGAAGCATA
TTTCGCAGCCCTCCCTGTCAAGTAAGGTGTTTCTAAACAAGCGGAAAAAGAAGGGCCTAGGGAAG
CGTAGCGCTTATCTATCCCGGCTGACTCCCTGGTGCGTAAAGCCC
Right flanking sequence: Indices 40393 -- 40892
CTTCCTTTTCTCCCAAGTGGGGGAAGCCCCCCTCAACCCCAGCCTTGGCAAGGCTATACTCTACC
ATTGAGCTATTTCCGCCAGCCAGAAGTCTCTAATTGACAAGGCAAGGTTTTAGCAGAAAATAGAT
TGGATGGGGAATGTCTTACTCGACACTCTGATGACTTCCGCAACCTTCCCTTAAAAGTTGATCGA
TAGGCCCATGCTTGGAAAGATTCGAACTCTCAACCCCCAAATCCGTAGTTTGGTGCTCTATCCAA
TTGAGCTACAAGCACTTCTCCGAGATTGTTGCTTATCCCTTCTATTCACTATTGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GAAGAGAGATGCTGAAAGAAGGCTTGGCTAGGAAAGATCTATATACGAGAATTTCCTTCCAGCAC
TCACTCTTAAGTAAGGTTTCGAAGTCTTACTTCTCTAAAGCTGCT
Found at i:40715 original size:4 final size:4
Alignment explanation
Indices: 40706--40786 Score: 162
Period size: 4 Copynumber: 20.2 Consensus size: 4
40696 ATTCACTATT
40706 GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA
1 GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA
40754 GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA G
1 GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA G
40787 AGAGATGCTG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 77 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (4 bp):
GGAA
Left flanking sequence: Indices 40206 -- 40705
TCGAAAGACAGACTATCTATGGAAGCATATTTCGCAGCCCTCCCTGTCAAGTAAGGTGTTTCTAA
ACAAGCGGAAAAAGAAGGGCCTAGGGAAGCGTAGCGCTTATCTATCCCGGCTGACTCCCTGGTGC
GTAAAGCCCACATTCATTCCTGACTTCCGTAAAACATTCATTCCCATTCCGTAAAACCTTCCTTT
TCTCCCAAGTGGGGGAAGCCCCCCTCAACCCCAGCCTTGGCAAGGCTATACTCTACCATTGAGCT
ATTTCCGCCAGCCAGAAGTCTCTAATTGACAAGGCAAGGTTTTAGCAGAAAATAGATTGGATGGG
GAATGTCTTACTCGACACTCTGATGACTTCCGCAACCTTCCCTTAAAAGTTGATCGATAGGCCCA
TGCTTGGAAAGATTCGAACTCTCAACCCCCAAATCCGTAGTTTGGTGCTCTATCCAATTGAGCTA
CAAGCACTTCTCCGAGATTGTTGCTTATCCCTTCTATTCACTATT
Right flanking sequence: Indices 40787 -- 41286
AGAGATGCTGAAAGAAGGCTTGGCTAGGAAAGATCTATATACGAGAATTTCCTTCCAGCACTCAC
TCTTAAGTAAGGTTTCGAAGTCTTACTTCTCTAAAGCTGCTTTGGGGGATCCAAGGACCCGGCAC
GGGGTAGGGGGCCGGGCGGCTTGGGTCACCCCCTTATCCTTTACGTGATTCCAATGGCTTGGATC
ACAACCTTATCATTTACGTTGATTTCCACCCTCATCCGTACGCACTGTAGTTGTGGGGTTAATTA
TTCCTGTAGGTTGGGCTTGGGGTGCGGCCTGCTGAAGCCTGGGCGGCGTCCGGATCTAGGGTCTC
CCAACGTTTACCCTTCTGCATGGCTTCGCCATGCCTACGCCTCAGCACCCGACAGCTCGTCGGTT
GATGTTGTGTGGGGAAACAGAGAATCTATCTTTGTGTATAGATGCAATAGAAGCGTTCCGTGGAA
CAGAAACCTGGGCCTTCGTGCCACTTCGAATTTGACCAAAAAAGC
Found at i:41442 original size:19 final size:18
Alignment explanation
Indices: 41418--41459 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
41408 TTGACCGAGC
*
41418 GCAGGGGTTTGAAGAGGTG
1 GCAGGGG-TTCAAGAGGTG
*
41437 GCAGGGGTTCCAGAGGTG
1 GCAGGGGTTCAAGAGGTG
41455 GCAGG
1 GCAGG
41460 AGGGTTGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.19, C:0.12, G:0.52, T:0.17
Consensus pattern (18 bp):
GCAGGGGTTCAAGAGGTG
Left flanking sequence: Indices 40918 -- 41417
GGGTAGGGGGCCGGGCGGCTTGGGTCACCCCCTTATCCTTTACGTGATTCCAATGGCTTGGATCA
CAACCTTATCATTTACGTTGATTTCCACCCTCATCCGTACGCACTGTAGTTGTGGGGTTAATTAT
TCCTGTAGGTTGGGCTTGGGGTGCGGCCTGCTGAAGCCTGGGCGGCGTCCGGATCTAGGGTCTCC
CAACGTTTACCCTTCTGCATGGCTTCGCCATGCCTACGCCTCAGCACCCGACAGCTCGTCGGTTG
ATGTTGTGTGGGGAAACAGAGAATCTATCTTTGTGTATAGATGCAATAGAAGCGTTCCGTGGAAC
AGAAACCTGGGCCTTCGTGCCACTTCGAATTTGACCAAAAAAGCAAGCAAGCGAGGTTGCCTGGC
AAATACAGTTGTCGGGATCCAAGGTGTCCCACTCTCCCGACTTAGTCTTTCAAGGTCTTCCCCCA
TTTAACGTGCCAATGAGGTTTGCAGAAGGGTGTTCTTGACCGAGC
Right flanking sequence: Indices 41460 -- 41959
AGGGTTGTTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTGCGAGAACTTACACCCTTCTGCTT
CCCCTGCGGGGGAAAGAGTGGTTCAAAGAACGGCCAGAAGTTACCCTTCCCCGGGGAGGGGAGGG
GAGGGGAGGGGAGGAGAACCCCTGCGCAGAAGGCAACCCAAGAAGTTTGTGTGAACTTCTGCTCT
CTCTTATATCCCTCTGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACACCCTTCT
GCAACCCGCACTCTTTTTTGCAGGCAGGAAATCCGTCAAGCCTGTAGGGTTCTCCTTCTTCCCCC
GCACGGGGGAAAGCTGCGCTCAGAAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCTCTTTTGGC
ACGTAAAGGTTGTTGGAAATGTCAAGAACACCACACTTTGTAAAGTGTGCAGAAGAACTAACTCC
TGCCACCCTCTTATATCCCTCTTCAGGTTGTTTGTGGGGAAACCC
Found at i:41587 original size:5 final size:5
Alignment explanation
Indices: 41577--41603 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
41567 ACCCTTCCCC
41577 GGGGA GGGGA GGGGA GGGGA GGGGA GG
1 GGGGA GGGGA GGGGA GGGGA GGGGA GG
41604 AGAACCCCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 41077 -- 41576
GCTGAAGCCTGGGCGGCGTCCGGATCTAGGGTCTCCCAACGTTTACCCTTCTGCATGGCTTCGCC
ATGCCTACGCCTCAGCACCCGACAGCTCGTCGGTTGATGTTGTGTGGGGAAACAGAGAATCTATC
TTTGTGTATAGATGCAATAGAAGCGTTCCGTGGAACAGAAACCTGGGCCTTCGTGCCACTTCGAA
TTTGACCAAAAAAGCAAGCAAGCGAGGTTGCCTGGCAAATACAGTTGTCGGGATCCAAGGTGTCC
CACTCTCCCGACTTAGTCTTTCAAGGTCTTCCCCCATTTAACGTGCCAATGAGGTTTGCAGAAGG
GTGTTCTTGACCGAGCGCAGGGGTTTGAAGAGGTGGCAGGGGTTCCAGAGGTGGCAGGAGGGTTG
TTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTGCGAGAACTTACACCCTTCTGCTTCCCCTGC
GGGGGAAAGAGTGGTTCAAAGAACGGCCAGAAGTTACCCTTCCCC
Right flanking sequence: Indices 41604 -- 42103
AGAACCCCTGCGCAGAAGGCAACCCAAGAAGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTC
TGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACACCCTTCTGCAACCCGCACTCT
TTTTTGCAGGCAGGAAATCCGTCAAGCCTGTAGGGTTCTCCTTCTTCCCCCGCACGGGGGAAAGC
TGCGCTCAGAAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCTCTTTTGGCACGTAAAGGTTGTT
GGAAATGTCAAGAACACCACACTTTGTAAAGTGTGCAGAAGAACTAACTCCTGCCACCCTCTTAT
ATCCCTCTTCAGGTTGTTTGTGGGGAAACCCCTGCGAAAACTTCTGCTTCTGCTTTTGGAAATCC
TTGGATCCCGACTTGCCACACTTTGCGCGCGCAAAAGTCCTTCGAAACTTCTCGTGCAGAAGGTT
TTTTGTTGCTTGCTTGCAGAAGGTTCTTTCCCCTCCCCTCCCCTC
Found at i:41818 original size:4 final size:4
Alignment explanation
Indices: 41809--41840 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
41799 TGCGCTCAGA
41809 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
41841 TCTTTTGGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00
Consensus pattern (4 bp):
AAGC
Left flanking sequence: Indices 41309 -- 41808
AATACAGTTGTCGGGATCCAAGGTGTCCCACTCTCCCGACTTAGTCTTTCAAGGTCTTCCCCCAT
TTAACGTGCCAATGAGGTTTGCAGAAGGGTGTTCTTGACCGAGCGCAGGGGTTTGAAGAGGTGGC
AGGGGTTCCAGAGGTGGCAGGAGGGTTGTTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTGCG
AGAACTTACACCCTTCTGCTTCCCCTGCGGGGGAAAGAGTGGTTCAAAGAACGGCCAGAAGTTAC
CCTTCCCCGGGGAGGGGAGGGGAGGGGAGGGGAGGAGAACCCCTGCGCAGAAGGCAACCCAAGAA
GTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTCTGAAGTTTGTGGGGAAAAGTTACCCCTGCG
CTCGGTAAAGAACACCCTTCTGCAACCCGCACTCTTTTTTGCAGGCAGGAAATCCGTCAAGCCTG
TAGGGTTCTCCTTCTTCCCCCGCACGGGGGAAAGCTGCGCTCAGA
Right flanking sequence: Indices 41841 -- 42340
TCTTTTGGCACGTAAAGGTTGTTGGAAATGTCAAGAACACCACACTTTGTAAAGTGTGCAGAAGA
ACTAACTCCTGCCACCCTCTTATATCCCTCTTCAGGTTGTTTGTGGGGAAACCCCTGCGAAAACT
TCTGCTTCTGCTTTTGGAAATCCTTGGATCCCGACTTGCCACACTTTGCGCGCGCAAAAGTCCTT
CGAAACTTCTCGTGCAGAAGGTTTTTTGTTGCTTGCTTGCAGAAGGTTCTTTCCCCTCCCCTCCC
CTCCCCTCCCCTCCCCTCCGGGGTGGGAAAGAACTTCTGCTTTCAAACAACCAACAACCTTTTGC
CAACAACCAGAGACTTCTGCCTGTTCCCCGGGTTGTCTCTTGCGTGTTGAATCTTCGCGCAGCGA
AGCGAAGGCAGGCATGTTGGGGAAATTAAAGCTTTTCAGAGATGGATGTCGAAACGGGAAAACGA
ATCGATCTTCTCCCGTTCGTTTGCCCAGCTAAAAGGAAATCCGAA
Found at i:42097 original size:5 final size:5
Alignment explanation
Indices: 42087--42119 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
42077 GAAGGTTCTT
42087 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC TCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC TCC
42120 GGGGTGGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 41587 -- 42086
GGGGAGGGGAGGGGAGGAGAACCCCTGCGCAGAAGGCAACCCAAGAAGTTTGTGTGAACTTCTGC
TCTCTCTTATATCCCTCTGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACACCCT
TCTGCAACCCGCACTCTTTTTTGCAGGCAGGAAATCCGTCAAGCCTGTAGGGTTCTCCTTCTTCC
CCCGCACGGGGGAAAGCTGCGCTCAGAAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCTCTTTT
GGCACGTAAAGGTTGTTGGAAATGTCAAGAACACCACACTTTGTAAAGTGTGCAGAAGAACTAAC
TCCTGCCACCCTCTTATATCCCTCTTCAGGTTGTTTGTGGGGAAACCCCTGCGAAAACTTCTGCT
TCTGCTTTTGGAAATCCTTGGATCCCGACTTGCCACACTTTGCGCGCGCAAAAGTCCTTCGAAAC
TTCTCGTGCAGAAGGTTTTTTGTTGCTTGCTTGCAGAAGGTTCTT
Right flanking sequence: Indices 42120 -- 42619
GGGGTGGGAAAGAACTTCTGCTTTCAAACAACCAACAACCTTTTGCCAACAACCAGAGACTTCTG
CCTGTTCCCCGGGTTGTCTCTTGCGTGTTGAATCTTCGCGCAGCGAAGCGAAGGCAGGCATGTTG
GGGAAATTAAAGCTTTTCAGAGATGGATGTCGAAACGGGAAAACGAATCGATCTTCTCCCGTTCG
TTTGCCCAGCTAAAAGGAAATCCGAAAAAGATTGCTGAGCGCAGCGGGGGAAGGCGTGCGAAGGC
CGGCCTTTGGTTCCAAAAACCCAGGAAAACCCTTACCATTTGTAATGACTAAGATCTCTGGCGTT
CCTATAGCTAATACCCAGGGTGTGCTAAGACGTTCCTTGCGTTAGGCTAAGAATGGGGTGGTAAG
ACATCCGTTAGTAGCTGAATAGAGGGGCTAAGATGTTCCTAAAGCTAATCCTTTGCGTGCGTTGT
TCAACCGCCGGGCTGTGATGACCACAGATGACCACGACCGCTACT
Found at i:43092 original size:21 final size:21
Alignment explanation
Indices: 43066--43107 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
43056 ACAACCAACC
*
43066 TTCAGAGTAATATAAGAGGGA
1 TTCAGAGGAATATAAGAGGGA
43087 TTCAGAGGAATATAAGAGGGA
1 TTCAGAGGAATATAAGAGGGA
43108 GGTTCAGGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.05, G:0.31, T:0.21
Consensus pattern (21 bp):
TTCAGAGGAATATAAGAGGGA
Left flanking sequence: Indices 42566 -- 43065
GTGCGTTGTTCAACCGCCGGGCTGTGATGACCACAGATGACCACGACCGCTACTAGAACGAGCTA
CTAATACGATAGGTTAATCGATTATGAATGGAGAACGGAGTGGGACCTATCGTATTCCCTCGTGT
TAAAGGATGGGTTAATCAATTAGAATTAGGGATACCGGCTGAACTCAGCACAACAGCCACAATAG
GGATAACTAAGAAAGGATGGGTTAATCAATTAGAATTAGGGATACCGATTAGAATTGGGGAGACC
AACTGAACTCACGACAATAGGGAGAACGGGAACGCATGAACTCCTCGATGAATCTCTCGTGATAC
CAGGTCTTACCTTGACCGAGCGCAGGGGAAGAGGTTCAGGGATGTGCAGAAGTTCCGAGCGCAGG
CCCTTTTCCCCTGCGAGTTTTGGTTGCTTACCTTTACCGAGCTTAGCGAGGAACTTTGGAAGTGC
AGAAGTCCCGAGCGCAGGGTAACTTTTCCCCACAAACAACCAACC
Right flanking sequence: Indices 43108 -- 43607
GGTTCAGGGATGTGCAGAAGTTCCGAGCGCAGGGTAACACCCTTTTCCCCTGCGAGGTGAAGGGA
AACGATCCAACCAATGAATGAACGTATGAACCAACCCATTAACGTATGAACCAACCAATTAACCT
ATGGACGAATGAAACAATGAACCGATGAACGTATTCACCCATGGACAAATGAACAAACCAATCAA
CGAATGAACGTATGGACGAATGAAACAATCAACTGGACGGATGAAACAATCAACTATGAACGAAC
CAATCAACGAATGAGCGTATGGACGAATGAAACAATGTCAACCTCTCCCCCCCCATCGGGGAGCG
ACAGCGAACCTATCCTTCGGTTGGACACGGTGAGCGAAGCGAACCTAGCTTAGATTGGGCGAAGC
GAACCTATTAACACGCTGAGCGGAGCTAACCGCCGGCCGGGGGTGAGCGAAGCCGCCCACCAGGG
GAGCGAAGCGAGCCTATGCACTCGGTGAGCGAAGCGAACCAGGGA
Found at i:43233 original size:20 final size:20
Alignment explanation
Indices: 43193--43240 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
43183 CCAATGAATG
*
43193 AACGTATGAACCAACCCATT
1 AACGTATGAACCAACCAATT
43213 AACGTATGAACCAACCAATT
1 AACGTATGAACCAACCAATT
*
43233 AACCTATG
1 AACGTATG
43241 GACGAATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.42, C:0.27, G:0.10, T:0.21
Consensus pattern (20 bp):
AACGTATGAACCAACCAATT
Left flanking sequence: Indices 42693 -- 43192
TGTTAAAGGATGGGTTAATCAATTAGAATTAGGGATACCGGCTGAACTCAGCACAACAGCCACAA
TAGGGATAACTAAGAAAGGATGGGTTAATCAATTAGAATTAGGGATACCGATTAGAATTGGGGAG
ACCAACTGAACTCACGACAATAGGGAGAACGGGAACGCATGAACTCCTCGATGAATCTCTCGTGA
TACCAGGTCTTACCTTGACCGAGCGCAGGGGAAGAGGTTCAGGGATGTGCAGAAGTTCCGAGCGC
AGGCCCTTTTCCCCTGCGAGTTTTGGTTGCTTACCTTTACCGAGCTTAGCGAGGAACTTTGGAAG
TGCAGAAGTCCCGAGCGCAGGGTAACTTTTCCCCACAAACAACCAACCTTCAGAGTAATATAAGA
GGGATTCAGAGGAATATAAGAGGGAGGTTCAGGGATGTGCAGAAGTTCCGAGCGCAGGGTAACAC
CCTTTTCCCCTGCGAGGTGAAGGGAAACGATCCAACCAATGAATG
Right flanking sequence: Indices 43241 -- 43740
GACGAATGAAACAATGAACCGATGAACGTATTCACCCATGGACAAATGAACAAACCAATCAACGA
ATGAACGTATGGACGAATGAAACAATCAACTGGACGGATGAAACAATCAACTATGAACGAACCAA
TCAACGAATGAGCGTATGGACGAATGAAACAATGTCAACCTCTCCCCCCCCATCGGGGAGCGACA
GCGAACCTATCCTTCGGTTGGACACGGTGAGCGAAGCGAACCTAGCTTAGATTGGGCGAAGCGAA
CCTATTAACACGCTGAGCGGAGCTAACCGCCGGCCGGGGGTGAGCGAAGCCGCCCACCAGGGGAG
CGAAGCGAGCCTATGCACTCGGTGAGCGAAGCGAACCAGGGAGAGCCCAGCGATCCTATTGACAC
GCTGAGCAAAGCCATCCTATCCTTCGCTTCGCTGCGAAACAACCCAACCAAACAACCGAACAACC
CGCACTCTTTTTTTGAAATCCGTCCAAAAAGAACTGAACTTACTT
Found at i:43341 original size:21 final size:21
Alignment explanation
Indices: 43315--43357 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
43305 AATGAACGTA
43315 TGGACGAATGAAACAATCAAC
1 TGGACGAATGAAACAATCAAC
*
43336 TGGACGGATGAAACAATCAAC
1 TGGACGAATGAAACAATCAAC
43357 T
1 T
43358 ATGAACGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (21 bp):
TGGACGAATGAAACAATCAAC
Left flanking sequence: Indices 42815 -- 43314
TTGGGGAGACCAACTGAACTCACGACAATAGGGAGAACGGGAACGCATGAACTCCTCGATGAATC
TCTCGTGATACCAGGTCTTACCTTGACCGAGCGCAGGGGAAGAGGTTCAGGGATGTGCAGAAGTT
CCGAGCGCAGGCCCTTTTCCCCTGCGAGTTTTGGTTGCTTACCTTTACCGAGCTTAGCGAGGAAC
TTTGGAAGTGCAGAAGTCCCGAGCGCAGGGTAACTTTTCCCCACAAACAACCAACCTTCAGAGTA
ATATAAGAGGGATTCAGAGGAATATAAGAGGGAGGTTCAGGGATGTGCAGAAGTTCCGAGCGCAG
GGTAACACCCTTTTCCCCTGCGAGGTGAAGGGAAACGATCCAACCAATGAATGAACGTATGAACC
AACCCATTAACGTATGAACCAACCAATTAACCTATGGACGAATGAAACAATGAACCGATGAACGT
ATTCACCCATGGACAAATGAACAAACCAATCAACGAATGAACGTA
Right flanking sequence: Indices 43358 -- 43857
ATGAACGAACCAATCAACGAATGAGCGTATGGACGAATGAAACAATGTCAACCTCTCCCCCCCCA
TCGGGGAGCGACAGCGAACCTATCCTTCGGTTGGACACGGTGAGCGAAGCGAACCTAGCTTAGAT
TGGGCGAAGCGAACCTATTAACACGCTGAGCGGAGCTAACCGCCGGCCGGGGGTGAGCGAAGCCG
CCCACCAGGGGAGCGAAGCGAGCCTATGCACTCGGTGAGCGAAGCGAACCAGGGAGAGCCCAGCG
ATCCTATTGACACGCTGAGCAAAGCCATCCTATCCTTCGCTTCGCTGCGAAACAACCCAACCAAA
CAACCGAACAACCCGCACTCTTTTTTTGAAATCCGTCCAAAAAGAACTGAACTTACTTTTCCCCG
CTGCGCGAAGCAACAAACCACCCAACATCCCAAACAACCTTTTCCCCTGCGCACAAACAACCTTT
CTTGGTTCCAAAAAGAAAGTGTGCAGAAGAGAGTTCTTCTGCAGG
Found at i:43867 original size:17 final size:18
Alignment explanation
Indices: 43847--43903 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
43837 AGAAGAGAGT
43847 TCTTCTGCAGGCAG-AGA
1 TCTTCTGCAGGCAGAAGA
*
43864 TCTTCTGCTGCGC-GAAGA
1 TCTTCTGCAG-GCAGAAGA
*
43882 ACTTCTTGCAGGCAGAAGA
1 TCTTC-TGCAGGCAGAAGA
43901 TCT
1 TCT
43904 GCAGAAGTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
17 10 0.31
18 11 0.34
19 11 0.34
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (18 bp):
TCTTCTGCAGGCAGAAGA
Left flanking sequence: Indices 43347 -- 43846
AACAATCAACTATGAACGAACCAATCAACGAATGAGCGTATGGACGAATGAAACAATGTCAACCT
CTCCCCCCCCATCGGGGAGCGACAGCGAACCTATCCTTCGGTTGGACACGGTGAGCGAAGCGAAC
CTAGCTTAGATTGGGCGAAGCGAACCTATTAACACGCTGAGCGGAGCTAACCGCCGGCCGGGGGT
GAGCGAAGCCGCCCACCAGGGGAGCGAAGCGAGCCTATGCACTCGGTGAGCGAAGCGAACCAGGG
AGAGCCCAGCGATCCTATTGACACGCTGAGCAAAGCCATCCTATCCTTCGCTTCGCTGCGAAACA
ACCCAACCAAACAACCGAACAACCCGCACTCTTTTTTTGAAATCCGTCCAAAAAGAACTGAACTT
ACTTTTCCCCGCTGCGCGAAGCAACAAACCACCCAACATCCCAAACAACCTTTTCCCCTGCGCAC
AAACAACCTTTCTTGGTTCCAAAAAGAAAGTGTGCAGAAGAGAGT
Right flanking sequence: Indices 43904 -- 44403
GCAGAAGTTCTTCTGCACACTTTAAAGAAAGCAAGCAAGCAAGTATTCCACTCCAAACTTCTGCT
TCGCGCAGCGAAGAAACACACTTCTGCTTCCAAACTCCTGCTTCGCGCAGCAGAAGTTTCAACTT
TTAACCCTTCTGCACACTTTTTGGAACGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAAC
GCGCAGCGGTGAAGGGGAAGGAAAAGAACTTCTGCGGATTTCAAAAGAGAGTGCGGGGAAAAGGT
TGGTTGTTTTTCGCAGCGGGAACTTTTGGCAACGCAACTTTTTAAGTTCCTTTCAGGCCACGAGA
TTACAAAGGACGGATTTCAAAAGAGAGTGCCAAAATTTCGCAGCGAAGCGAAGGGAAGGCAACTT
GGCCGGGTTGTTGCCGTGCCAGGTTGTTTCGAAGACTGTGGCTTTTCTCCGTGCCTACCTTTGTA
ATTTCGAAACAACCATAAAAGTTCTGGTTGAGAGTTCGGCAAGCC
Found at i:45349 original size:17 final size:17
Alignment explanation
Indices: 45327--45359 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
45317 CCGAATTAAC
45327 AACAGTTTGCACGAATT
1 AACAGTTTGCACGAATT
45344 AACAGTTTGCACGAAT
1 AACAGTTTGCACGAAT
45360 GTGTGGGCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (17 bp):
AACAGTTTGCACGAATT
Left flanking sequence: Indices 44827 -- 45326
CGCAGCTACCGTGCCAGGCACGGCACGGGGGAAAGAACCTTCTGCAAGCAAGCAACTTCTGCACT
CATTCGCAAATTACAAAGGTTTAAACAAAAGAATCTGAGCGCAGCGGTGAAGGGGAAGCAAAAGT
TGGTTGCTTGCGAAGGTTCACGGCACGGGGTTTAGAAAGGTGTGAACAAAAAAAGAGTGCGGGTT
GTAAAAAGCAAGCAAGTTCTTCTGCGCAGGTGAACTTCTTGGGAACTTTTGGGTTGCTTGCGAAG
GCACACCTGAAAGTTAGAACACAACTTTTGCTTCGCTGCGAAACCGGCACTCTTTTTTTGTTCCA
GAAGGTTCTTCGCTGCGCGAAGCAGAAGTTCACACAAACAACCCGCAGAAGTTCTTGGTCCTTGG
AACCAAAAAGTTCACTCATTCGAAACAGGTAGGCACGGATAACCAACCCGCCCGAATTAGCAACT
TTAAACAGTTTGCACGAATAGCAACTTCTGACGGCCCGAATTAAC
Right flanking sequence: Indices 45360 -- 45859
GTGTGGGCGGCACTTGCCGGGACTCCTTGGATCTCCTACGGGGAACCACCCCTTGCGGGGGAAGC
CTAGTGTCTTCCCTCTTATATGACTCTGGAGTACGGGAGGCACGGATCCCCTTTAAGTCGGGTCC
CCCTTAATCCCCCTCCTTGGATCCCCTCCTTGGATCCCGGTCTTCCCCTCAACCTTGGGGGGACC
CCCTTGAGTTAGGACCCCAAAAACCATTCAAGGTACCCCTCCCCTTCGGGGCCCCCCTTTCGGGC
ATTGTATTCCTCTCGCCTCTAGCGGCAACACCAACTGAAAGCATGCACATCAAATTCGGGCAACT
TGGGCTCCCGTAGGACTCGAACCCACCTTGCTTGGCTGCTCAAAACTGTCGGGTGGGTTAACCAT
TACTACACCCTGTCAGGGGGGCCTGTCGGCAGCCCCCAGGGTAGGAATGCTGCTGCTTCGTCAGC
GCTACCCTCATATTACATCAACCTGCGTCCGTCCGTCGTTTACCA
Found at i:45515 original size:13 final size:13
Alignment explanation
Indices: 45499--45527 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
45489 CCCCTTAATC
45499 CCCCTCCTTGGAT
1 CCCCTCCTTGGAT
45512 CCCCTCCTTGGAT
1 CCCCTCCTTGGAT
45525 CCC
1 CCC
45528 GGTCTTCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.52, G:0.14, T:0.28
Consensus pattern (13 bp):
CCCCTCCTTGGAT
Left flanking sequence: Indices 44999 -- 45498
TGAACAAAAAAAGAGTGCGGGTTGTAAAAAGCAAGCAAGTTCTTCTGCGCAGGTGAACTTCTTGG
GAACTTTTGGGTTGCTTGCGAAGGCACACCTGAAAGTTAGAACACAACTTTTGCTTCGCTGCGAA
ACCGGCACTCTTTTTTTGTTCCAGAAGGTTCTTCGCTGCGCGAAGCAGAAGTTCACACAAACAAC
CCGCAGAAGTTCTTGGTCCTTGGAACCAAAAAGTTCACTCATTCGAAACAGGTAGGCACGGATAA
CCAACCCGCCCGAATTAGCAACTTTAAACAGTTTGCACGAATAGCAACTTCTGACGGCCCGAATT
AACAACAGTTTGCACGAATTAACAGTTTGCACGAATGTGTGGGCGGCACTTGCCGGGACTCCTTG
GATCTCCTACGGGGAACCACCCCTTGCGGGGGAAGCCTAGTGTCTTCCCTCTTATATGACTCTGG
AGTACGGGAGGCACGGATCCCCTTTAAGTCGGGTCCCCCTTAATC
Right flanking sequence: Indices 45528 -- 46027
GGTCTTCCCCTCAACCTTGGGGGGACCCCCTTGAGTTAGGACCCCAAAAACCATTCAAGGTACCC
CTCCCCTTCGGGGCCCCCCTTTCGGGCATTGTATTCCTCTCGCCTCTAGCGGCAACACCAACTGA
AAGCATGCACATCAAATTCGGGCAACTTGGGCTCCCGTAGGACTCGAACCCACCTTGCTTGGCTG
CTCAAAACTGTCGGGTGGGTTAACCATTACTACACCCTGTCAGGGGGGCCTGTCGGCAGCCCCCA
GGGTAGGAATGCTGCTGCTTCGTCAGCGCTACCCTCATATTACATCAACCTGCGTCCGTCCGTCG
TTTACCACCATCTGTAATGTGCGAAACTCCTATTGGCTTCCGCCAGTTTATGAAGATCATCCCTT
CTTTTACGAGCACTCCCTCTTTTTTCAGGAGCTTCCAGTATTTCAGCGGATAAACATTGATCTAA
GCTTTGGCTATTTCGGCTCATAAGACGTCGTTTGATAGCTGCTTC
Found at i:47920 original size:17 final size:17
Alignment explanation
Indices: 47900--47947 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
47890 ATCTATATAT
*
47900 TATATATAGGTATAATA
1 TATATATAGATATAATA
*
47917 TATAGATAGATATAATA
1 TATATATAGATATAATA
47934 TATAATATA-ATATA
1 TAT-ATATAGATATA
47948 TAGATAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 23 0.85
18 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (17 bp):
TATATATAGATATAATA
Left flanking sequence: Indices 47400 -- 47899
TGTGGGTTTAACGAGTGGATGGCCCAATTAAAAGGTGGGGCTTAACGAGTGGATGGCCGGATGTG
GATAGCGGCCCTTAAAAGTCGAGTGTCTTCCCTCTTCCTTAAACTCTTCCCCTGCGCTCGGAGAA
CACCCTTCTGCACCTCTGGAGTAGGCTGCCTACGGGGGACTTGGATCCCACCCTGGCACTCCCTT
CGCTTCGCTGCGCTCAGCAATCAATCTTTTTCGGACGGATTTCCTAAAAGAAGGGTTGCAGAAGG
TTGGTAAGTTCTTGACCGAGCCAGGGGTAACTTCTGCGAGAACTTCTGCGTATGTGCAGAAGGTT
GTAAGTTCTCCGAGCACCGCGAGAACACCCTTCTGCGGAGAAGAGCTCTTCCCCGGAGAACCCCT
GCGCGAAGCAAAAGTTCTTTCTTGGTTCCTAAAAAAAGCTGCACTGCAGCGGGACTTACTTTTTC
CCGCAGAAGTTCTCTTCCCCTATATCTAGAAGAATATCTATATAT
Right flanking sequence: Indices 47948 -- 48447
TAGATAATATTTGTGAATTGCTTGTTTGTTGATGTCCCCAGGCTGCCAATCCATTCCGGCTCCCT
GTCGGTATTTCCCCGACTTTCTGATGATTGTACTTGTCCTGTCGTAAATCCTGCTTCTATTGACA
CGATTTAAAGTCTCTTTTCTGGGCGGGCCTCTGTCCTCGTGTTTCTGTCTTTCGTTACGGTGGCC
CGGAGGAAAGCGGGGTCCGTTGTCCCTTGAATCTAGGTGCGGGTGCCGGTCTCTGTAGGTTTCGT
CCTGGGTCCTCCCCTCCTCTTAAAGGTTCCGTTGTCTCTATTGAATCAATGTATATAGAGGTAGC
TGGTTTATTGTCCTGGTCAAAGTGTAAAATCTAGGCCTGGCTGTGCAAATTGCACATATGTCTGA
CTCGCTGTCCCGTTGGCCTCGTGAGTAGGTATCGGTCCAGTGTCCCTTGATCTACGGTAGGTCGG
GTCGTTGTTCCCCTCTTTTGAAGGAAGAAGTAGTGGGTGTTTCTC
Found at i:47941 original size:12 final size:12
Alignment explanation
Indices: 47910--47949 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
47900 TATATATAGG
47910 TATAATAT-ATA
1 TATAATATAATA
*
47921 GATAGATATAATA
1 TATA-ATATAATA
47934 TATAATATAATA
1 TATAATATAATA
47946 TATA
1 TATA
47950 GATAATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 3 0.12
12 16 0.64
13 6 0.24
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (12 bp):
TATAATATAATA
Left flanking sequence: Indices 47410 -- 47909
ACGAGTGGATGGCCCAATTAAAAGGTGGGGCTTAACGAGTGGATGGCCGGATGTGGATAGCGGCC
CTTAAAAGTCGAGTGTCTTCCCTCTTCCTTAAACTCTTCCCCTGCGCTCGGAGAACACCCTTCTG
CACCTCTGGAGTAGGCTGCCTACGGGGGACTTGGATCCCACCCTGGCACTCCCTTCGCTTCGCTG
CGCTCAGCAATCAATCTTTTTCGGACGGATTTCCTAAAAGAAGGGTTGCAGAAGGTTGGTAAGTT
CTTGACCGAGCCAGGGGTAACTTCTGCGAGAACTTCTGCGTATGTGCAGAAGGTTGTAAGTTCTC
CGAGCACCGCGAGAACACCCTTCTGCGGAGAAGAGCTCTTCCCCGGAGAACCCCTGCGCGAAGCA
AAAGTTCTTTCTTGGTTCCTAAAAAAAGCTGCACTGCAGCGGGACTTACTTTTTCCCGCAGAAGT
TCTCTTCCCCTATATCTAGAAGAATATCTATATATTATATATAGG
Right flanking sequence: Indices 47950 -- 48449
GATAATATTTGTGAATTGCTTGTTTGTTGATGTCCCCAGGCTGCCAATCCATTCCGGCTCCCTGT
CGGTATTTCCCCGACTTTCTGATGATTGTACTTGTCCTGTCGTAAATCCTGCTTCTATTGACACG
ATTTAAAGTCTCTTTTCTGGGCGGGCCTCTGTCCTCGTGTTTCTGTCTTTCGTTACGGTGGCCCG
GAGGAAAGCGGGGTCCGTTGTCCCTTGAATCTAGGTGCGGGTGCCGGTCTCTGTAGGTTTCGTCC
TGGGTCCTCCCCTCCTCTTAAAGGTTCCGTTGTCTCTATTGAATCAATGTATATAGAGGTAGCTG
GTTTATTGTCCTGGTCAAAGTGTAAAATCTAGGCCTGGCTGTGCAAATTGCACATATGTCTGACT
CGCTGTCCCGTTGGCCTCGTGAGTAGGTATCGGTCCAGTGTCCCTTGATCTACGGTAGGTCGGGT
CGTTGTTCCCCTCTTTTGAAGGAAGAAGTAGTGGGTGTTTCTCGT
Found at i:49246 original size:5 final size:5
Alignment explanation
Indices: 49236--49272 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
49226 ACTCTTCCCC
*
49236 GGGGA GGGGA GGGGA GGGGA TGGGA GGGGA GGGGA GG
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GG
49273 AGAACCCCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.19, C:0.00, G:0.78, T:0.03
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 48736 -- 49235
ACGTACGGTGCACCAACTTTCCGTCCGTCCTCGTCCGTCGGGATCCAAGGAACCGGGGGAACCAC
TCGGAACTCCATCCGTCCACGCCCGAAAAACCACCAACATTCCCCTACCGTGGGGAACCCGTGCC
CTACCTTTGGACTCATCTTGGTAGGTGCAGGTTTCCGGAGTGCCTTCCCAGTTTGTTTTAAATTG
AAGTGCCGGGCATCCGTGCCGTGAACTTCTGCTTCGCTGCGCTCAGAACTTTTGGCGCTTTTGGA
AATCCGCACCGCAGAAGGGTGTTCTCCTCACAACCCGCTGCGCGGAGAACACCCTTCTGGTTCCA
AACAACCAACCAACCTTCTGGAAAGGAAAGGAAAGAGATCGGCAGAAGTTTGGAACTTCTGGTTT
GGAACCAGGGGAAAAGGTTGTTTGGTGTGAACTCCTGCCACCCTCTTATATTCCTCTGAAGTGGG
AAACCCCTGCGCGAAGATTCAACACGCCAACAAGAACTCTTCCCC
Right flanking sequence: Indices 49273 -- 49772
AGAACCCCTGCGCGGAGAACCCGCCGGTTCAACCTTTTGCCAACCTTCTGGAAATCGGCAGAAGG
TTGGTTGTTTGGAAGCATAAGTTCTTCGCTACGCGAAGAACCAGCCAACCTTCTGGAGGTCCGGT
AAACCCGCCAACCCTTCTTGGTCCTTTGTAACTTCGAAACAACCTTAAACTTATTACGGCAGAAG
GGTTGTTGAAAGTTGGGTGTTGCCAACCAAACAACACCCCAAAAAGAACGGCACTTTCTTTCTCT
CTTTCGCTTTCTTTAACTCTCTCTCTTCTCTCTTTCGCTTTCTTTAACTTTCGAACTCTCTTTCT
TGATTTCTTTCTTGATTTCTTGATTTCTTTCTTGATTTCTTTCTTTAAGGTTGTTTAGGATAAAA
GTCCTTTTGCGCGCGCGCGCAAAGTGTGGCGGGATCCAAGGATTTCCAAAAGCAGAAGCAGAAGT
TTGTTTTCGCAGCGAAGAACTTTGAACCACTCGTAACTCCTTCCG
Found at i:49552 original size:18 final size:18
Alignment explanation
Indices: 49521--49581 Score: 51
Period size: 18 Copynumber: 3.7 Consensus size: 18
49511 AAGAACGGCA
**
49521 CTTTCTTTCTCTCTTTCG
1 CTTTCTTTAACTCTTTCG
* *
49539 CTTTCTTTAACTCTCTCT
1 CTTTCTTTAACTCTTTCG
49557 C-TTC--T--CTCTTTCG
1 CTTTCTTTAACTCTTTCG
49570 CTTTCTTTAACT
1 CTTTCTTTAACT
49582 TTCGAACTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
13 7 0.22
14 3 0.09
15 1 0.03
16 1 0.03
17 3 0.09
18 17 0.53
ACGTcount: A:0.07, C:0.33, G:0.03, T:0.57
Consensus pattern (18 bp):
CTTTCTTTAACTCTTTCG
Left flanking sequence: Indices 49021 -- 49520
CCTCACAACCCGCTGCGCGGAGAACACCCTTCTGGTTCCAAACAACCAACCAACCTTCTGGAAAG
GAAAGGAAAGAGATCGGCAGAAGTTTGGAACTTCTGGTTTGGAACCAGGGGAAAAGGTTGTTTGG
TGTGAACTCCTGCCACCCTCTTATATTCCTCTGAAGTGGGAAACCCCTGCGCGAAGATTCAACAC
GCCAACAAGAACTCTTCCCCGGGGAGGGGAGGGGAGGGGATGGGAGGGGAGGGGAGGAGAACCCC
TGCGCGGAGAACCCGCCGGTTCAACCTTTTGCCAACCTTCTGGAAATCGGCAGAAGGTTGGTTGT
TTGGAAGCATAAGTTCTTCGCTACGCGAAGAACCAGCCAACCTTCTGGAGGTCCGGTAAACCCGC
CAACCCTTCTTGGTCCTTTGTAACTTCGAAACAACCTTAAACTTATTACGGCAGAAGGGTTGTTG
AAAGTTGGGTGTTGCCAACCAAACAACACCCCAAAAAGAACGGCA
Right flanking sequence: Indices 49582 -- 50081
TTCGAACTCTCTTTCTTGATTTCTTTCTTGATTTCTTGATTTCTTTCTTGATTTCTTTCTTTAAG
GTTGTTTAGGATAAAAGTCCTTTTGCGCGCGCGCGCAAAGTGTGGCGGGATCCAAGGATTTCCAA
AAGCAGAAGCAGAAGTTTGTTTTCGCAGCGAAGAACTTTGAACCACTCGTAACTCCTTCCGCAGA
AGTTCCTCTTCCCCTGCGCTCGGAGAACACCCGCACATACCTCATTGGTTCCGGCACGGGTTCCC
CGGGAGCCCTTGGATCTCCTACCTCACGAATATGTTAATATTCTAGAAAGAGCGGGATAGAGTAA
TCGGTTAACTCGTTAGGCTCATGCCCTAAGCATGCAGGTTCGAATCCTGCTCCCGCAAAACCAAC
CCTTCCTCCCGGGTTTTAAGGGATGAATGTCAAACCGAGCGAGAGGCTGGTTTGACCCTCTCTAA
TCAACCGAAGGGGCCGAACGTGCGTGAGGTGGCAGGGGAGGGATA
Found at i:49606 original size:12 final size:12
Alignment explanation
Indices: 49591--49642 Score: 76
Period size: 12 Copynumber: 4.7 Consensus size: 12
49581 TTTCGAACTC
49591 TCTTTCTTGATT
1 TCTTTCTTGATT
49603 TCTTTCTTGA--
1 TCTTTCTTGATT
49613 --TTTCTTGATT
1 TCTTTCTTGATT
49623 TCTTTCTTGATT
1 TCTTTCTTGATT
49635 TCTTTCTT
1 TCTTTCTT
49643 TAAGGTTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
8 8 0.22
12 28 0.78
ACGTcount: A:0.08, C:0.17, G:0.08, T:0.67
Consensus pattern (12 bp):
TCTTTCTTGATT
Left flanking sequence: Indices 49091 -- 49590
GAAAGAGATCGGCAGAAGTTTGGAACTTCTGGTTTGGAACCAGGGGAAAAGGTTGTTTGGTGTGA
ACTCCTGCCACCCTCTTATATTCCTCTGAAGTGGGAAACCCCTGCGCGAAGATTCAACACGCCAA
CAAGAACTCTTCCCCGGGGAGGGGAGGGGAGGGGATGGGAGGGGAGGGGAGGAGAACCCCTGCGC
GGAGAACCCGCCGGTTCAACCTTTTGCCAACCTTCTGGAAATCGGCAGAAGGTTGGTTGTTTGGA
AGCATAAGTTCTTCGCTACGCGAAGAACCAGCCAACCTTCTGGAGGTCCGGTAAACCCGCCAACC
CTTCTTGGTCCTTTGTAACTTCGAAACAACCTTAAACTTATTACGGCAGAAGGGTTGTTGAAAGT
TGGGTGTTGCCAACCAAACAACACCCCAAAAAGAACGGCACTTTCTTTCTCTCTTTCGCTTTCTT
TAACTCTCTCTCTTCTCTCTTTCGCTTTCTTTAACTTTCGAACTC
Right flanking sequence: Indices 49643 -- 50142
TAAGGTTGTTTAGGATAAAAGTCCTTTTGCGCGCGCGCGCAAAGTGTGGCGGGATCCAAGGATTT
CCAAAAGCAGAAGCAGAAGTTTGTTTTCGCAGCGAAGAACTTTGAACCACTCGTAACTCCTTCCG
CAGAAGTTCCTCTTCCCCTGCGCTCGGAGAACACCCGCACATACCTCATTGGTTCCGGCACGGGT
TCCCCGGGAGCCCTTGGATCTCCTACCTCACGAATATGTTAATATTCTAGAAAGAGCGGGATAGA
GTAATCGGTTAACTCGTTAGGCTCATGCCCTAAGCATGCAGGTTCGAATCCTGCTCCCGCAAAAC
CAACCCTTCCTCCCGGGTTTTAAGGGATGAATGTCAAACCGAGCGAGAGGCTGGTTTGACCCTCT
CTAATCAACCGAAGGGGCCGAACGTGCGTGAGGTGGCAGGGGAGGGATAAATCTTTGAAACACAT
GGGAGTTTGGGCCCGCCCAAACCAACAACCAACAAACAACTAGCT
Found at i:49616 original size:20 final size:20
Alignment explanation
Indices: 49593--49638 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
49583 TCGAACTCTC
49593 TTTCTTGATTTCTTTCTTGA
1 TTTCTTGATTTCTTTCTTGA
49613 TTTCTTGATTTCTTTCTTGA
1 TTTCTTGATTTCTTTCTTGA
49633 TTTCTT
1 TTTCTT
49639 TCTTTAAGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.09, C:0.15, G:0.09, T:0.67
Consensus pattern (20 bp):
TTTCTTGATTTCTTTCTTGA
Left flanking sequence: Indices 49093 -- 49592
AAGAGATCGGCAGAAGTTTGGAACTTCTGGTTTGGAACCAGGGGAAAAGGTTGTTTGGTGTGAAC
TCCTGCCACCCTCTTATATTCCTCTGAAGTGGGAAACCCCTGCGCGAAGATTCAACACGCCAACA
AGAACTCTTCCCCGGGGAGGGGAGGGGAGGGGATGGGAGGGGAGGGGAGGAGAACCCCTGCGCGG
AGAACCCGCCGGTTCAACCTTTTGCCAACCTTCTGGAAATCGGCAGAAGGTTGGTTGTTTGGAAG
CATAAGTTCTTCGCTACGCGAAGAACCAGCCAACCTTCTGGAGGTCCGGTAAACCCGCCAACCCT
TCTTGGTCCTTTGTAACTTCGAAACAACCTTAAACTTATTACGGCAGAAGGGTTGTTGAAAGTTG
GGTGTTGCCAACCAAACAACACCCCAAAAAGAACGGCACTTTCTTTCTCTCTTTCGCTTTCTTTA
ACTCTCTCTCTTCTCTCTTTCGCTTTCTTTAACTTTCGAACTCTC
Right flanking sequence: Indices 49639 -- 50138
TCTTTAAGGTTGTTTAGGATAAAAGTCCTTTTGCGCGCGCGCGCAAAGTGTGGCGGGATCCAAGG
ATTTCCAAAAGCAGAAGCAGAAGTTTGTTTTCGCAGCGAAGAACTTTGAACCACTCGTAACTCCT
TCCGCAGAAGTTCCTCTTCCCCTGCGCTCGGAGAACACCCGCACATACCTCATTGGTTCCGGCAC
GGGTTCCCCGGGAGCCCTTGGATCTCCTACCTCACGAATATGTTAATATTCTAGAAAGAGCGGGA
TAGAGTAATCGGTTAACTCGTTAGGCTCATGCCCTAAGCATGCAGGTTCGAATCCTGCTCCCGCA
AAACCAACCCTTCCTCCCGGGTTTTAAGGGATGAATGTCAAACCGAGCGAGAGGCTGGTTTGACC
CTCTCTAATCAACCGAAGGGGCCGAACGTGCGTGAGGTGGCAGGGGAGGGATAAATCTTTGAAAC
ACATGGGAGTTTGGGCCCGCCCAAACCAACAACCAACAAACAACT
Found at i:50624 original size:5 final size:5
Alignment explanation
Indices: 50614--50642 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
50604 CGCAGGGGTT
50614 CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
50643 GAGGGGTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 50114 -- 50613
CCAAACCAACAACCAACAAACAACTAGCTCTTCACGGGGATTGGGAGTCCGAAAACTGACTGTGG
TAGGCAACCATATTTGCTGCATCTTCAGAGATGGGAATCTTGGCTCAGAGCTATACCCAACCATC
CACTTTGTTTTTAAGGGTATAAGTCCCGAGATTAGAGCAGTCAGCCGGTCGGGATTGAGCTTTCG
TAGGAGATCCAACAACGGAGAATCTCAGTCCCGGCACTCCCGTACGGCACGGGCGGGATATAAGA
GGGAAGACACTCGTAAGACCACCCCCCCGGGATTCAGTGACTGACTTTGCCGAGTGAACTAACTC
TAGGCAGAGGTCAGAGTGCACCAACCCAGAACTTCGTGCCGTTTCCAGCAACCAACCAAAAAGTT
GTTTGAATGAGGGCAACTTCAGACAAGACATAAAAGTTCATTCGAAACAACCGCAACGCAACTTT
TATCACGAACTCTTTAGGCACATACCTTTACCGAGCGCAGGGGTT
Right flanking sequence: Indices 50643 -- 51142
GAGGGGTTTGTTTGTTTTTTTTTTTTCTTGTTTGTGCCACTTCTATCACGTTCACAAAGGAACCA
AAAGAAAGCTCTGAGCGCAGCAGAAGAACTTCTGGTTTCCCAAGAAGTTCCTCTTCCCCTGCGCT
CGGTCAAGGTAATAACCTTCTGCACACTTTTGGTTGGTTGCAGAAGAAAAACCAGCAACCTTTAA
GTTCGTTCTTCTGCTTCGCGCAGCAGAAGATCTCTGCTCTGCTTTCAAACAACCAACAACCTTTT
GCCAACAACCCAGAAGTTCAAACCAAACCTTCTGCACACTTTTTGGAACTCCAAAAGGATCAAGA
AGGTTTGCTTGCGTGAAACTTCTGCTTCGCGCAGGGGAATAAGTTCAGGTTGGTTGCAGAAGAAA
AACCAGCAACCTTTAAGTTCTTCTGCTTCGCGCAGCAAGTGAAGGAACTCCCAACTTTCTTTCTT
TCTTTCTTTCTTTCTTTCGAACTTTCTTTCTTTCGAACTTTCTCT
Found at i:51096 original size:4 final size:4
Alignment explanation
Indices: 51087--51131 Score: 63
Period size: 4 Copynumber: 11.2 Consensus size: 4
51077 GAACTCCCAA
***
51087 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CGAA CTTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
51132 GAACTTTCTC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.04, C:0.27, G:0.02, T:0.67
Consensus pattern (4 bp):
CTTT
Left flanking sequence: Indices 50587 -- 51086
CACATACCTTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCCCTCCCCTCCCCTCCGAGGGGTTT
GTTTGTTTTTTTTTTTTCTTGTTTGTGCCACTTCTATCACGTTCACAAAGGAACCAAAAGAAAGC
TCTGAGCGCAGCAGAAGAACTTCTGGTTTCCCAAGAAGTTCCTCTTCCCCTGCGCTCGGTCAAGG
TAATAACCTTCTGCACACTTTTGGTTGGTTGCAGAAGAAAAACCAGCAACCTTTAAGTTCGTTCT
TCTGCTTCGCGCAGCAGAAGATCTCTGCTCTGCTTTCAAACAACCAACAACCTTTTGCCAACAAC
CCAGAAGTTCAAACCAAACCTTCTGCACACTTTTTGGAACTCCAAAAGGATCAAGAAGGTTTGCT
TGCGTGAAACTTCTGCTTCGCGCAGGGGAATAAGTTCAGGTTGGTTGCAGAAGAAAAACCAGCAA
CCTTTAAGTTCTTCTGCTTCGCGCAGCAAGTGAAGGAACTCCCAA
Right flanking sequence: Indices 51132 -- 51631
GAACTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTT
CTTTTTGGGAAGAGCTTCGCGCAGCAAGTGAAGGAACTCCCAACTTTCTTTCTCTCTTTCGCTTT
CTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTTTTTGGGAAGAGCTTCGCG
CAGCAGAAGTTTCAACCCCCAACAACCCAGAAGTTCAACCCAACCCCTGCAAAAAAAATCTCTTG
TTGGACGGGGGGTTTAAAGTTTGCGTGAACTTTTGCTTCGCGCAGCGAAGTGAAGGAAATCCAAC
TTTACGTGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCGGAGCAGAAGTTCACGGATTAACAA
CAGTTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCACGTTTAGCAACTT
Found at i:51108 original size:16 final size:16
Alignment explanation
Indices: 51085--51156 Score: 94
Period size: 16 Copynumber: 4.6 Consensus size: 16
51075 AGGAACTCCC
*
51085 AACTTTCTTTCTTTCT
1 AACTTTCTTTCTTTCG
**
51101 TTCTTTCTTTCTTTCG
1 AACTTTCTTTCTTTCG
51117 AACTTTCTTTCTTTCG
1 AACTTTCTTTCTTTCG
*
51133 AACTTTCTCTCTTTCG
1 AACTTTCTTTCTTTCG
51149 --CTTTCTTT
1 AACTTTCTTT
51157 AACTCGCTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
14 7 0.14
16 42 0.86
ACGTcount: A:0.08, C:0.26, G:0.04, T:0.61
Consensus pattern (16 bp):
AACTTTCTTTCTTTCG
Left flanking sequence: Indices 50585 -- 51084
GGCACATACCTTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCCCTCCCCTCCCCTCCGAGGGGT
TTGTTTGTTTTTTTTTTTTCTTGTTTGTGCCACTTCTATCACGTTCACAAAGGAACCAAAAGAAA
GCTCTGAGCGCAGCAGAAGAACTTCTGGTTTCCCAAGAAGTTCCTCTTCCCCTGCGCTCGGTCAA
GGTAATAACCTTCTGCACACTTTTGGTTGGTTGCAGAAGAAAAACCAGCAACCTTTAAGTTCGTT
CTTCTGCTTCGCGCAGCAGAAGATCTCTGCTCTGCTTTCAAACAACCAACAACCTTTTGCCAACA
ACCCAGAAGTTCAAACCAAACCTTCTGCACACTTTTTGGAACTCCAAAAGGATCAAGAAGGTTTG
CTTGCGTGAAACTTCTGCTTCGCGCAGGGGAATAAGTTCAGGTTGGTTGCAGAAGAAAAACCAGC
AACCTTTAAGTTCTTCTGCTTCGCGCAGCAAGTGAAGGAACTCCC
Right flanking sequence: Indices 51157 -- 51656
AACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTTTTTGGGAAGAGCTTCGCGCAGC
AAGTGAAGGAACTCCCAACTTTCTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTC
GAACTTAAAATCTTTCTTTCTTTTTGGGAAGAGCTTCGCGCAGCAGAAGTTTCAACCCCCAACAA
CCCAGAAGTTCAACCCAACCCCTGCAAAAAAAATCTCTTGTTGGACGGGGGGTTTAAAGTTTGCG
TGAACTTTTGCTTCGCGCAGCGAAGTGAAGGAAATCCAACTTTACGTGCCAAAAGAGCTTGCTTG
CTTTCTGAGCGCAGCGGAGCAGAAGTTCACGGATTAACAACAGTTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCACGTTTAGCAACTTGGCCCCCGTGCCAGCAAAAAAGAGT
Found at i:51163 original size:14 final size:14
Alignment explanation
Indices: 51146--51173 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51136 TTTCTCTCTT
51146 TCGCTTTCTTTAAC
1 TCGCTTTCTTTAAC
51160 TCGCTTTCTTTAAC
1 TCGCTTTCTTTAAC
51174 CTTCGAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.07, T:0.50
Consensus pattern (14 bp):
TCGCTTTCTTTAAC
Left flanking sequence: Indices 50646 -- 51145
GGGTTTGTTTGTTTTTTTTTTTTCTTGTTTGTGCCACTTCTATCACGTTCACAAAGGAACCAAAA
GAAAGCTCTGAGCGCAGCAGAAGAACTTCTGGTTTCCCAAGAAGTTCCTCTTCCCCTGCGCTCGG
TCAAGGTAATAACCTTCTGCACACTTTTGGTTGGTTGCAGAAGAAAAACCAGCAACCTTTAAGTT
CGTTCTTCTGCTTCGCGCAGCAGAAGATCTCTGCTCTGCTTTCAAACAACCAACAACCTTTTGCC
AACAACCCAGAAGTTCAAACCAAACCTTCTGCACACTTTTTGGAACTCCAAAAGGATCAAGAAGG
TTTGCTTGCGTGAAACTTCTGCTTCGCGCAGGGGAATAAGTTCAGGTTGGTTGCAGAAGAAAAAC
CAGCAACCTTTAAGTTCTTCTGCTTCGCGCAGCAAGTGAAGGAACTCCCAACTTTCTTTCTTTCT
TTCTTTCTTTCTTTCGAACTTTCTTTCTTTCGAACTTTCTCTCTT
Right flanking sequence: Indices 51174 -- 51673
CTTCGAACTTAAAATCTTTCTTTCTTTTTGGGAAGAGCTTCGCGCAGCAAGTGAAGGAACTCCCA
ACTTTCTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCT
TTCTTTTTGGGAAGAGCTTCGCGCAGCAGAAGTTTCAACCCCCAACAACCCAGAAGTTCAACCCA
ACCCCTGCAAAAAAAATCTCTTGTTGGACGGGGGGTTTAAAGTTTGCGTGAACTTTTGCTTCGCG
CAGCGAAGTGAAGGAAATCCAACTTTACGTGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCGG
AGCAGAAGTTCACGGATTAACAACAGTTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCACGTTTAGCAA
CTTGGCCCCCGTGCCAGCAAAAAAGAGTGCCAAAATCTCGCAGCG
Found at i:51255 original size:109 final size:109
Alignment explanation
Indices: 51135--51331 Score: 394
Period size: 109 Copynumber: 1.8 Consensus size: 109
51125 TTCTTTCGAA
51135 CTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTT
1 CTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTT
51200 TTTGGGAAGAGCTTCGCGCAGCAAGTGAAGGAACTCCCAACTTT
66 TTTGGGAAGAGCTTCGCGCAGCAAGTGAAGGAACTCCCAACTTT
51244 CTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTT
1 CTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTT
51309 TTTGGGAAGAGCTTCGCGCAGCA
66 TTTGGGAAGAGCTTCGCGCAGCA
51332 GAAGTTTCAA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 88 1.00
ACGTcount: A:0.19, C:0.26, G:0.13, T:0.42
Consensus pattern (109 bp):
CTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTT
TTTGGGAAGAGCTTCGCGCAGCAAGTGAAGGAACTCCCAACTTT
Left flanking sequence: Indices 50635 -- 51134
TCCCCTCCGAGGGGTTTGTTTGTTTTTTTTTTTTCTTGTTTGTGCCACTTCTATCACGTTCACAA
AGGAACCAAAAGAAAGCTCTGAGCGCAGCAGAAGAACTTCTGGTTTCCCAAGAAGTTCCTCTTCC
CCTGCGCTCGGTCAAGGTAATAACCTTCTGCACACTTTTGGTTGGTTGCAGAAGAAAAACCAGCA
ACCTTTAAGTTCGTTCTTCTGCTTCGCGCAGCAGAAGATCTCTGCTCTGCTTTCAAACAACCAAC
AACCTTTTGCCAACAACCCAGAAGTTCAAACCAAACCTTCTGCACACTTTTTGGAACTCCAAAAG
GATCAAGAAGGTTTGCTTGCGTGAAACTTCTGCTTCGCGCAGGGGAATAAGTTCAGGTTGGTTGC
AGAAGAAAAACCAGCAACCTTTAAGTTCTTCTGCTTCGCGCAGCAAGTGAAGGAACTCCCAACTT
TCTTTCTTTCTTTCTTTCTTTCTTTCGAACTTTCTTTCTTTCGAA
Right flanking sequence: Indices 51332 -- 51831
GAAGTTTCAACCCCCAACAACCCAGAAGTTCAACCCAACCCCTGCAAAAAAAATCTCTTGTTGGA
CGGGGGGTTTAAAGTTTGCGTGAACTTTTGCTTCGCGCAGCGAAGTGAAGGAAATCCAACTTTAC
GTGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCGGAGCAGAAGTTCACGGATTAACAACAGTT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGCTTGCTTGCACGTTTAGCAACTTGGCCCCCGTGCCAGCAAAAAAGAGT
GCCAAAATCTCGCAGCGAAGCGAAGGGGAAGGAGGGCAAAACAGTTGTGGGACAACTTGGATCCC
GACTTACTTTTTGTTGCGATTGAATCCGTGCCTACAAAGTTTGCTGTTCCCGCACGGGGGAGGGG
AGGGGAGGGGAGGGGAAAGCTGCGCTCAGTAGAGGAAATCCGTCC
Found at i:51272 original size:14 final size:14
Alignment explanation
Indices: 51255--51282 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51245 TTTCTCTCTT
51255 TCGCTTTCTTTAAC
1 TCGCTTTCTTTAAC
51269 TCGCTTTCTTTAAC
1 TCGCTTTCTTTAAC
51283 CTTCGAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.07, T:0.50
Consensus pattern (14 bp):
TCGCTTTCTTTAAC
Left flanking sequence: Indices 50755 -- 51254
TTCCTCTTCCCCTGCGCTCGGTCAAGGTAATAACCTTCTGCACACTTTTGGTTGGTTGCAGAAGA
AAAACCAGCAACCTTTAAGTTCGTTCTTCTGCTTCGCGCAGCAGAAGATCTCTGCTCTGCTTTCA
AACAACCAACAACCTTTTGCCAACAACCCAGAAGTTCAAACCAAACCTTCTGCACACTTTTTGGA
ACTCCAAAAGGATCAAGAAGGTTTGCTTGCGTGAAACTTCTGCTTCGCGCAGGGGAATAAGTTCA
GGTTGGTTGCAGAAGAAAAACCAGCAACCTTTAAGTTCTTCTGCTTCGCGCAGCAAGTGAAGGAA
CTCCCAACTTTCTTTCTTTCTTTCTTTCTTTCTTTCGAACTTTCTTTCTTTCGAACTTTCTCTCT
TTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTTTTTGGGAAGA
GCTTCGCGCAGCAAGTGAAGGAACTCCCAACTTTCTTTCTCTCTT
Right flanking sequence: Indices 51283 -- 51782
CTTCGAACTTAAAATCTTTCTTTCTTTTTGGGAAGAGCTTCGCGCAGCAGAAGTTTCAACCCCCA
ACAACCCAGAAGTTCAACCCAACCCCTGCAAAAAAAATCTCTTGTTGGACGGGGGGTTTAAAGTT
TGCGTGAACTTTTGCTTCGCGCAGCGAAGTGAAGGAAATCCAACTTTACGTGCCAAAAGAGCTTG
CTTGCTTTCTGAGCGCAGCGGAGCAGAAGTTCACGGATTAACAACAGTTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCACGTTTAGCAACTTGGCCCCCGTGCCAGCAAAAAAGAGTGCCAAAATCTCGCAGC
GAAGCGAAGGGGAAGGAGGGCAAAACAGTTGTGGGACAACTTGGATCCCGACTTACTTTTTGTTG
CGATTGAATCCGTGCCTACAAAGTTTGCTGTTCCCGCACGGGGGA
Found at i:51535 original size:4 final size:4
Alignment explanation
Indices: 51526--51617 Score: 184
Period size: 4 Copynumber: 23.0 Consensus size: 4
51516 TAACAACAGT
51526 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
51574 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
51618 ACGTTTAGCA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 88 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 51026 -- 51525
GAAGAAAAACCAGCAACCTTTAAGTTCTTCTGCTTCGCGCAGCAAGTGAAGGAACTCCCAACTTT
CTTTCTTTCTTTCTTTCTTTCTTTCGAACTTTCTTTCTTTCGAACTTTCTCTCTTTCGCTTTCTT
TAACTCGCTTTCTTTAACCTTCGAACTTAAAATCTTTCTTTCTTTTTGGGAAGAGCTTCGCGCAG
CAAGTGAAGGAACTCCCAACTTTCTTTCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTT
CGAACTTAAAATCTTTCTTTCTTTTTGGGAAGAGCTTCGCGCAGCAGAAGTTTCAACCCCCAACA
ACCCAGAAGTTCAACCCAACCCCTGCAAAAAAAATCTCTTGTTGGACGGGGGGTTTAAAGTTTGC
GTGAACTTTTGCTTCGCGCAGCGAAGTGAAGGAAATCCAACTTTACGTGCCAAAAGAGCTTGCTT
GCTTTCTGAGCGCAGCGGAGCAGAAGTTCACGGATTAACAACAGT
Right flanking sequence: Indices 51618 -- 52117
ACGTTTAGCAACTTGGCCCCCGTGCCAGCAAAAAAGAGTGCCAAAATCTCGCAGCGAAGCGAAGG
GGAAGGAGGGCAAAACAGTTGTGGGACAACTTGGATCCCGACTTACTTTTTGTTGCGATTGAATC
CGTGCCTACAAAGTTTGCTGTTCCCGCACGGGGGAGGGGAGGGGAGGGGAGGGGAAAGCTGCGCT
CAGTAGAGGAAATCCGTCCTCTTCTCGTGCGCAGGGGAAAAGGTTGGTTGTTTGTTGCTATCCGT
GCCTGGGGATTCGTGCCTGAAGGTTGTTAATTCGTGCCGGCAAAGCTATTCGTGCCCAGAAGGTT
GGTTGTTTGTTGCTTGCTTGCAGAAGGCCCTTCCCCCGTGCCAGCCTACCTGGCACGGTAGCTGC
GAAAACTTCTGCTTACTTTTGGCACAAACCAACTTGCCCAAAAGTTGTTTGGAAATCCGCACCGG
GTGTTCTCTTCCCCTTCCCCTGCGCGAAGCAGAAGTTCCCAACCC
Found at i:51788 original size:5 final size:5
Alignment explanation
Indices: 51778--51802 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
51768 TTCCCGCACG
51778 GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA
51803 AAGCTGCGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 51278 -- 51777
TTAACCTTCGAACTTAAAATCTTTCTTTCTTTTTGGGAAGAGCTTCGCGCAGCAGAAGTTTCAAC
CCCCAACAACCCAGAAGTTCAACCCAACCCCTGCAAAAAAAATCTCTTGTTGGACGGGGGGTTTA
AAGTTTGCGTGAACTTTTGCTTCGCGCAGCGAAGTGAAGGAAATCCAACTTTACGTGCCAAAAGA
GCTTGCTTGCTTTCTGAGCGCAGCGGAGCAGAAGTTCACGGATTAACAACAGTTTGCTTGCTTGC
TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCACGTTTAGCAACTTGGCCCCCGTGCCAGCAAAAAAGAGTGCCAAAATCTC
GCAGCGAAGCGAAGGGGAAGGAGGGCAAAACAGTTGTGGGACAACTTGGATCCCGACTTACTTTT
TGTTGCGATTGAATCCGTGCCTACAAAGTTTGCTGTTCCCGCACG
Right flanking sequence: Indices 51803 -- 52302
AAGCTGCGCTCAGTAGAGGAAATCCGTCCTCTTCTCGTGCGCAGGGGAAAAGGTTGGTTGTTTGT
TGCTATCCGTGCCTGGGGATTCGTGCCTGAAGGTTGTTAATTCGTGCCGGCAAAGCTATTCGTGC
CCAGAAGGTTGGTTGTTTGTTGCTTGCTTGCAGAAGGCCCTTCCCCCGTGCCAGCCTACCTGGCA
CGGTAGCTGCGAAAACTTCTGCTTACTTTTGGCACAAACCAACTTGCCCAAAAGTTGTTTGGAAA
TCCGCACCGGGTGTTCTCTTCCCCTTCCCCTGCGCGAAGCAGAAGTTCCCAACCCTTCTTGGTCC
AACAAGAACGGCACGGGGGAAAGCTGCGCGAAGAACAACCCGAAGTTCGCAGAAGTTCTCCGCTG
CGCGAAGCAGAAGTTCCCAAGTTCCTCGCTGCGCTCGGTCAAGGTAATACAACCCCAAGAGATTT
TTGGGGTTGGGTTGAACTTCTGGGTTGTTGGGGGTTGAAACTTCT
Found at i:52695 original size:5 final size:5
Alignment explanation
Indices: 52685--52721 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
52675 TTTTGGAGGT
52685 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CT
1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CT
52722 GGGAACTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 52185 -- 52684
CTCCGCTGCGCGAAGCAGAAGTTCCCAAGTTCCTCGCTGCGCTCGGTCAAGGTAATACAACCCCA
AGAGATTTTTGGGGTTGGGTTGAACTTCTGGGTTGTTGGGGGTTGAAACTTCTGCTGCGCGAAGA
AACTTTCTTGTCCAACAGCTTGCCAACTTCTGCGGGTTGTTTGCAGAAGAACTTCTGCTGCGCGA
AGAAACTTTCTTGTCCAACAAGTGCGAACTTTCGGTAGCTGCGCTCAGATTCAACACGAAGGTTT
GCCAACTTTTAAGCAGGCAGAAGTCCTACGCGAAGCAGAAGTTTTTGCTTGCCCAGGTCACACCT
TCTTGGTCCTTTGTAAGCGAATTCGTGCCTTCGCTGGGGGAAGGGCCCTTCCCCTGCGCTCAGAT
TCTTTTGGAAGTCCTTCGCTGGGGGAAGGGCCCTTCCCCTGCGCTCAGATTCAACCTTTTGGCAG
AAGAACTTCTGCAAACCCCTGCGCTCAGATAGCTTTTTTGGAGGT
Right flanking sequence: Indices 52722 -- 53221
GGGAACTTACTTTTTCCCGCCCTTCCCCGGCACATACCTTTACCGAGCGCAGGGGAAGAGGTGGG
AAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTAAAGAACTTCCAACCTTCTGCGT
TGGCAGAAGTTCTTTTCCCGCTGCGCTCAGATAGCTTTTTTGTAAGACGGATTTGGGAAGAGCTT
TTCCTTCCCCCGCTGCGCGAAGCAGAAGAACTGCAGAAGTTCTTCTGCAACCAACACTCCAACTT
TCAAGATATTTTTTTTGCTTTGCAGAAGGGGGGAGGTCTTGGTTTCTGCGCGAAGCAGAAGTCTC
TGCCTGCCTGCCTGCAACCCTTTCAGGTCCAACTTTTAAGCAGGCAGAAGGGTGGGGAAAGTTGG
TTTCTGCGCGAAGTAGAAGTTTCACGCAAGCAAACCTTCTTGATCCTTTTGGAGTGGAATACTTG
CTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGGTTGGGTTGGTTTC
Found at i:53825 original size:15 final size:16
Alignment explanation
Indices: 53805--53843 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
53795 CGACTTGGCC
53805 AATGAGGGCCA-GAAG
1 AATGAGGGCCACGAAG
*
53820 AATGAGTGCCACGAAG
1 AATGAGGGCCACGAAG
53836 AATGAGGG
1 AATGAGGG
53844 AAGGAGGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.38, C:0.13, G:0.38, T:0.10
Consensus pattern (16 bp):
AATGAGGGCCACGAAG
Left flanking sequence: Indices 53305 -- 53804
AGCTTGCTTGCTTTTCCCGCTGCGAGATTTTGGCACTCTTTTTTGCTTGCACGGTAGGTTCACAC
CTTCAAACGCACGCACGCCAAAAGTTCCCAAGAAGTTCACCTGCTTGGAGAAACCAACACGCAAC
CCGCACTCTTTTTTTGTTCACACCTTTCTAAACCCCGCCTACCTTTGTAATTTCGTGGCGGTTGG
TTGTTTCGAAACAAGGTAGGCACGGATAGCTTTGCCGGTAAGTTTCATTGGCCCTCATTCTCCGA
GACTTTTCGGCAGAAGGTTGGTTGTTGGGAGACTCGGAGGCAGAAGGGTGTTCTTTACCGAGCGC
AGGTTTTCCCCCGAGGAACCTCTGCGTATGTGCAGAAGTTCTCCGAGACCGGGGCCCTTCTGCGA
GGTGGCAGGGAGAGTGGGTCTTGGATCCCAGTTGCCGGCACATTCGTGCAAGCAACTTTGCGAGA
ACACCCTTCTGCGGAGAGTGGGACAACTTGGATCCCGACTTGGCC
Right flanking sequence: Indices 53844 -- 54343
AAGGAGGGAGGGTGGTTCAAAGTTCGGTAGCTGCGCTCAGAAAGCAAGCAACTTCTGGTTTTGGA
AATCCGTCAAGAACACAAAGCAGAAGTCTCTTTCTTCGCTGCGCTCAGAACTTACTTTCTTTCTT
TTGGCACTTAAAGCGTGCGTGCGTGTGCGTGCGTGTTGGAAATCCTTGGATCCCGACTTGCCACA
CTTTAACACGAAGTGGGGGAACCCGAATAGCAACAAACAACCGGTTCACCCCCTGGGCACGAATA
GCAACCAACCAAACAAACTTCTGGCACGGATTTAAAGCAACTGGATCCAAGGAGTGCAAACTGTT
TAAAGTTGCTAATTCGTGCGGGGTTGTTTGTTGCTATCCGTGCCTACCTTTGGTTCCAGGGCCTT
CCCCCAAGCAAGAAGTGGCCGAAAAGGTTGTTTGTTTCTTCTCTTCTGGCAAGTGGCCAACAAAT
CCTTCTCGCCCTCATTCAAAGTGGCCGTGCGGGAACAGGTTGTTT
Found at i:55768 original size:23 final size:22
Alignment explanation
Indices: 55719--55773 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 22
55709 CGTTGGCCCG
* *
55719 GGGGCGTGTGCCTCATCAGTAA
1 GGGGCGGGTGCCCCATCAGTAA
* *
55741 AGGGCGGGTGCCCCAATCAGTGA
1 GGGGCGGGTGCCCC-ATCAGTAA
*
55764 GGGGCAGGTG
1 GGGGCGGGTG
55774 TCCCTTGTCC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.18, C:0.22, G:0.44, T:0.16
Consensus pattern (22 bp):
GGGGCGGGTGCCCCATCAGTAA
Left flanking sequence: Indices 55219 -- 55718
TACTCGACTTATATAAAGTTGATCCCGTGGTTTCCGGCTGCTTTAAACCAGCAACACATGTTTAA
GCCCATCCTCGACCCCTGGCAAAGGAACCTGGCAAAGAGACCGGCCCCCCTGAACCTCTTCAAAA
CCCTGCGCTCGGTAAAGGCACATACCTGATTTCTTGGTCCAACTTGTGGATAAATCTCTTTGTTC
CCGTGCTCTGGGTAAGAGTTTTCTTACCCGAGTCTACTCCGGACAGATTTCAAAAGAAGAGTGGG
GGGTTAAAAGTTGGTTTCGCAGCGGGGGAAGCGTGCGTTTGAAGGCCTACAGCCTCGGTGGAGTG
TCTGCCCTTCTCGAGTAAAGCCACTGGATCCTCTGCCAGGCCGGAGGCCTCGCATTTCTTGTTAA
TAAAGTTGCAAGGGGGGCCGAGAGCGCCTTGCATCGTTAATAAAGAGATCTCTTCTTGGCCGTTG
GCCTCGCGCGGCTTTCGGCCTCTTTCTGTAGGGGCCGTTGGCCCG
Right flanking sequence: Indices 55774 -- 56273
TCCCTTGTCCAATAAAGCTGGTGTGAGGATACGGGAGTAACTCGTTCCCGGGTGGTTTACGGGGG
ACTCGTCTCCGGACTAGGCCAACCCCGAGTAAAGAGGTGACTAACACTCGTACTTCGGACTCGTG
GATAAAGAGGTGACTACGGACTCGTCTGGGCTCGTCAACGGCCGGGCTGCTTTACCTCTTTGATG
TGTCCTTGGGAGGGGCCCCTTTATAGTATGAGTGGTCCGGGGCCCCTCATATTAGGGTTGGGGCA
TGTGCCCCATCAGTAAGGGGCGGGTGCCCCATAAAGTTTGTGATATGCGGGCCGCCCTGGCACTT
CGTGCTAACCACTATGTGGCCCCCTGGCACGGTAGTGCCACTATGAATGAGTGCCAAAAAGCAGC
CAGCCTACAGAACCGCCGGTTGCTAAACATGTCGTGCCGAGGGCCCGGTTGTTTGTTGCTATCCG
TGCCTACCTGCGAAACAACAACCCTTTTCGTGCAAACTGTTGATC
Found at i:60730 original size:5 final size:5
Alignment explanation
Indices: 60720--60749 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
60710 CCCCCGCACG
60720 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
60750 AAGAACCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 60220 -- 60719
CGAAACTTTTCGTGCAGAAGGGTACCCTTCTGCGTTGCTTTTTGGTTCCAAGGGCCAAGAAGGGT
TGACCGGACCGGTTGGTTGGCTGGTTCTTCGCGTAGGACTTATGCCTGCTTAAAAGTTGGCAAAC
CTTCGTGTTGAATCTGAGCGCAGGGGAAGAGGTGAAGGTGTGCAGAAGTTTGTTGCTTGCAGAAG
GTTCTCCGGCAACCCAAAAAAAAAGTTGCCTTCCCCGCTGCGAAAAACAACCCGCACTCTTTTTT
TGAAATCCGTCCTTTGTCATTTCGAAACAACCTTTTCGTGCGTGCAGAAGTTAGTTCTTTTTGCT
TGCTTGCTTGCAGAAGGCCCCCGTAAAAGTTGCCGTGAACCCGCACGCAAGCAAGCAACTTTTGC
TTCCCCTTCACCGCTGCGCTCAGAAAGCAAGCAAGCGGGAACTGGCAGGCACTTAAAGCGTGCGT
GCGTGTTGAGATCCGTCAAACCGGTTCTCCTTCTTCCCCCGCACG
Right flanking sequence: Indices 60750 -- 61249
AAGAACCTTCTGCAAGCAAGCAACAAACAACCTTCTGCCGTGCGGTTGTTTCGAAATTACAAAGG
TAGGCACGGGGGAAAACTCTTCGGCCAGGCCGTTGCACTTTTAATGGCAAGAATGAGTGCAAAAG
TCTCATTCGAAACAACCTGGCACGGCCACTTCTTGGGGGAAGGCCCTGGAACCAAAGGCAGGCAC
GGGGGAAAACAACCGCAAGCCACTTTTAATTGAAGTGGCAAAAGGTTGTTAGTTGGAACCTTCGC
AAGCAACTTTTGCCCAGCCGTTCACCTGCTTGGAGAAACCAACACGCAACCCAAGAAGTTTGTGT
GAACTTCTGCTCTCTCTTATATCCCTCTGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAA
AGAACACCCTTCTGCAACCCGCACTCTTTTTTTGAGATCCGCAGAAGTTCTTCGCTGCGCGAAGA
GGGAGGCCCTTGTTTAGAGGTCTTCCCCTTCTTGCAGGGGAAAAG
Found at i:71147 original size:47 final size:47
Alignment explanation
Indices: 71093--71189 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
71083 GATCCAAGGA
*
71093 CCCGCCTCCCCAGAGGAATAGTTCTCCGGGGGGGAAGACACTCGGAT
1 CCCGCCTCCCCAGAGGAATAGCTCTCCGGGGGGGAAGACACTCGGAT
*
71140 CCCGCCTCCCCAGAGGAATAGCTCTCCGGGGGGGAATACACTCGGAT
1 CCCGCCTCCCCAGAGGAATAGCTCTCCGGGGGGGAAGACACTCGGAT
71187 CCC
1 CCC
71190 TAACGGGTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.14
Consensus pattern (47 bp):
CCCGCCTCCCCAGAGGAATAGCTCTCCGGGGGGGAAGACACTCGGAT
Left flanking sequence: Indices 70593 -- 71092
GTATCAACAAACAAACGATGGTTACAGATCGAGTGGATGGGATGTCTCCGATCGATCCTAGCCCA
GACGTTCGTTGTCGATAGAGCTTTCGCGGCCCAATCAAATAAGTCAACCAGACCGGTAAACCAAT
AGAGCGATGCCAGGCGGTGCTGGTCAACAGGTCAACCAGCCGGTCAACCGGGCAAAGCCAATAAG
CGATGCCGGTCGACTGATCAAATCTGACCAGTCAGGAGCGATAAGCGATACCAGTTGTGACCGAT
ACTAATCAGCTAACCAGACAGCCAGAAACTTTGTCAGTAACGGGTCCAGTTGAGACCGATCTATA
TACGAAATTTACTGGTCAAACGCCCTTTCCCAGGTGAACACCGTAAAAGGTATCCAAGGACTTTG
CCAGGTATCCAAATCAAGGTATCCAAAACGGTATTCTTCCCCTTCACCGAGTGGGCTTTTACGGT
CGAGTGGACTTTTTTTTACGGTATCCAAATCAGGGGATCCAAGGA
Right flanking sequence: Indices 71190 -- 71689
TAACGGGTCCTTGGATCCCACCCTTACGGCCCACTCTCCCACCCGTGCCGGGTCTTGGATCCCAC
CTGACTTTTTGGGTCGAGTGTATCCCCTCTTCCTTAAACTCTTCCCCTGCGCTCGGTCAAGAACT
TCTGCCTCTGGAGTAGGCGTACGGGGTGGGAGAGTGGACCGGGGTGGGATCCAAGGTTGCCACCC
CTGCATAACGGGTGGGATCCAAGTCCCCCGTACGCCTACTCCAGAGGCAGAAGTTCTTTACCGAG
CGCAGGGGTAACTTCTGCGAGGTTAAGGAAGAGGGGATACACTCGACCGTAAAGGTCCTTGGATA
CCGTAAAAGCCCACTCGGGGAAGAAGACCGTTTTGGATACCTTGATTTGGATACCGTAGTTGCCC
CTTTAAAAAGCCACCCCATTGGATCTCCAGCCAATGAGTGCAAAAGTGGCCGGTTGTTTGTTTCC
GTGCCTACCTTTGTAAGCGAAACAACCTTTTCGGCTACGAAGAAT
Found at i:72111 original size:5 final size:5
Alignment explanation
Indices: 72101--72129 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
72091 CGCAGGGGTT
72101 CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
72130 GGGGTTTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 71601 -- 72100
GATCTCCAGCCAATGAGTGCAAAAGTGGCCGGTTGTTTGTTTCCGTGCCTACCTTTGTAAGCGAA
ACAACCTTTTCGGCTACGAAGAATGAGGGAAGGAGGGAGAGTGGTTCAAAGTTATTCGCTGCGCT
CAGAAAGCAAGCAAGCTCTTTTGGCACGTAAAGGTTGTTGGAAATCCTTGGATCCCGGCTTGCCA
CACCTTTTAGGACAGATTTCAAAAGCAGAAGTTTTCGCAGCGAAGCGAAGGCACGGATCCCCTTC
GAATGAGTGCCACCTTTTAGGCACGGCACGGATGTTTAGCCACTTTTAAAGAATGAGGGTTGGCG
GGTTGTTGTTTTTCCCCCGTGCCAGCCTACCTTTGTAAGCGAAACTCTTCGTGCAGAAGGTTTGT
TGTTGGTTCCAAGGTGTGCAGAAGGTTGGTTGTTTGAAAGAGACTTCTGCGCAGCTTTCCCTTCC
CCCGTGCGAAGAAGGGGAAGCAGAAGTTTTCCGAGCGCAGGGGTT
Right flanking sequence: Indices 72130 -- 72629
GGGGTTTGCAGAAGTTCTTCTGCACACAAAGTGTGGTGTTCTTGACGGATTTCCAACACGCACGC
ACGCACGCTTTAAGTGCCTGCCTGCCAGTTCCCGCTTGCTTGCTTGCTTTCTGAGCGCAGCGGGG
ACTTACTTGTTGGCGTGCGAAGGTTCCCTTTTGTCCCACTCTCCCTCCTTCCCTCATTCTTTAAA
AGTGGCTTTTATCCGTGCCTACCTTTGGGGAAGGGCCTTCCCCGTGGCCGTGCCAGGTTGTTTCG
AATAACAACCTTTTCCCCTGCGGAAGCCCGTTAAAATCCGCTTACAAAGGTTTAAACAAAAGAAT
CTGAGCGCAGCGAAGAACTCTGTAGGCACGGATTACTGCAGAACTGAACCGGGTTGTTGCCGAAA
AGGTTGTTTCGTAGTGGCACTCCTTGGATCCGGTGGCTTTCCCCCGTGCCTACCTTTGTAAGCGA
AACAACAACCCGCAGAAGTTGCTTGCAGAAGGTTCTTCGTGCCAC
Found at i:73296 original size:5 final size:5
Alignment explanation
Indices: 73286--73383 Score: 196
Period size: 5 Copynumber: 19.6 Consensus size: 5
73276 TCCCGTCAAG
73286 CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT
1 CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT
73336 CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTC
1 CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTC
73384 CCAGTGGCCA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 93 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
CTCTT
Left flanking sequence: Indices 72786 -- 73285
AGGCACAGCCCGCCCGTCCACTCGGTCGAGTGTCTTCCCCCGTGCCGGGACTCCGCCCTTGGATC
TCCTACCCGCCACAATTCCTTGTCCAGAGGAACGCTAGCTACAAATTGAGACCGGTCCGTTGAAG
GAGGGAGGGTTCAGACGAACCAATCAACAATCCACCTGGCGCTGTCGATAGAGCGATGCCGGTCC
AACAAGTCAACCAGTTACCCAGTTAACCTGTTCTTCCCCGGATACCAGTAAAGACTGAAATCAAG
AGCAATGCCAGTCAAACGGTGTTGGTTTGAAAGACCACGAAAAGCTCACCAGCTTTCCGGTAAAT
TAGCCAACCTATAAATAAAGTGGTCAGTAAAGCGATACCGGTCGTGGCCGGATAAACAACCAGTA
GACTAGCCAACCAAGAGTGGTCAATAGAGCGCAGTCCCGAGATCAAGAGCAATGTCAGTAGAGCG
GTGTTGGTTGTGACCGATGATCTATGAACGAGTTTTCCCGTCAAG
Right flanking sequence: Indices 73384 -- 73883
CCAGTGGCCAAAGCAGCCCGGCTGCCGACAGAGGGAAGATCCAGCGACCGACCAGCGTGGGGCTC
GAACGAACCAGAAACGTAGGAGGGTAGGAGATCCAAGGGTGGGGCAACTACGGTATCCAAATCAA
GGTATCCAAAACGGTCTTCTTCCCCGAGTGGGCTTTTACGGTCGGGTGTCTTCCCTCTTCCTTAA
ACTCTTCCCCTGCGCTCGGTCAAGAACTTCTGCCTCTGGAGTAGGCGTACGGGGGACTTGGATCC
CACCCTTACGGTCCACTCTCCCGCCCCGTACGGCAGCCTACTCCAGAGGCAGAAGTTCTTTACCG
AGCGCAGGGGTAACTTCTGCGAGGTTAAGGAAGAGGGAAGACACTCGTAAGACTTTGCCAGGAGT
CCCGTGCCTCTTCCCCCGGCACAGAGTAATATAAGAGGACTGTTGGAAGACACTCGACTGACTTG
ACTGACTTTGCCGAGTGTCTTCCCTCTTATATCCCGCCCGGGAAG
Found at i:75249 original size:17 final size:18
Alignment explanation
Indices: 75211--75249 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
75201 GGGTATTGGT
75211 CGAGTGGATGGCCTTACGGC
1 CGAGTGGATGGCC-T-CGGC
75231 CGAGTGGATGGCC-CGGC
1 CGAGTGGATGGCCTCGGC
75248 CG
1 CG
75250 GCCCCTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
20 13 0.68
ACGTcount: A:0.13, C:0.28, G:0.44, T:0.15
Consensus pattern (18 bp):
CGAGTGGATGGCCTCGGC
Left flanking sequence: Indices 74711 -- 75210
CAAAACACATCCCTTCAGCTAAGGTGCGTCGAGTGTCTTCCCCAAACGGCTCGTATTCCCGTAAA
AGTTCTTTTGTTGGTCGAGTGTACCTTATGGTACCCCGGGGGAACGAGTGTACCTTATGGGACCC
AGGGAGAGTGGATGGCAGGCACTTAAGAAAGCAAGCGTGGTTCCCCTTTTAAAATCGAGAGAGTG
GATGGCAAAAAGCAGCAAGGAGAATTCGGGCCTTACGAGAGAGTGGATTAAGGCACGAGGGGATC
CGTGCTAGCCGGGGGGACGAGTGGATGGCCTGCCAGGGGTAGGGAGAGTGGATGGCAGGGAGAGT
GGATTAAACCTGACAAAGTCGGGATCCAAGTTGTCCCACTCTCCCTCCTATCCGTGAAAGCCGGG
GTATTTGTCGAGTGGATGGCCTTACGGTTTGAGAATTCGTGGATGGCCTTACGAGAGGGTGGATT
AAGGCACGAGGGGATCCGTGCTAGCCATAATAAAGGGGTATTGGT
Right flanking sequence: Indices 75250 -- 75749
GCCCCTCTATTTATTAAAAGGCTGGGCTGTATAAAAAGTTCTGGCTCATACCTGAAGGGAAGGGA
AGGGAGATAGATAGATCTTAGTTGAAAGCAAACGGGTAGGAGATCCAAGGGCGGGCGGAGTCCTG
TCAAGGGAGGGGGACTGGGTAGGGGATCCGAGTTTGTCGGGATAAGACTTTCCCAAACAAGTTTG
ACTCTCCAGTTCCGTCCTTGGATCCAAAAGGCAGGCCCCAAAAGAACTAACTCCCCCCTCCCCAC
CCTTTCACAGCTCTATCGGTTTTTCTCGGAAGCGATCTTGCTCGTTTATCGCATCCCTGCTAACT
TTTAATGAACAGATTTTTCTCATGCCTGCTCTCTTTCTTTCCCCACTCTGCTCCAGACCCTAGCT
TTACGGAACAAAAGGGGCCCTACCTAAATGGATGGATGGATGGAGGGATAAAGGCAAGCCCTATG
GGCCTTGGCCCGGACAGGAACATACCTGACTTTGGCGTTGCGGGA
Found at i:76243 original size:4 final size:4
Alignment explanation
Indices: 76234--76313 Score: 160
Period size: 4 Copynumber: 20.0 Consensus size: 4
76224 ACCGCAGAAG
76234 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
76282 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
76314 AGAAGGTTAT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 76 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 75734 -- 76233
CTTTGGCGTTGCGGGACAGGGCTTGAGCAAAGGGATCGGCATGTGCATGCCGGGGCGCGTAGGCT
CTTGCATGCCAGGTATGTGCATGCCGAATTCAGGCATGTGCAGGTAAAGAAGCTGGTATCCTATT
AAAGAAGGCCTTAATGACTAGTATCCCAGCTTTCCCTAAGCTGTGTAGTAAACCCGACACCTAGC
CGTCGTTTGAAACAATTGCCTCAAGCTCAGCCATGTAGTAAACCTGACACCTAGCCATCTCTGTG
TTAGGTATTAGGGATCGGTACCTGGGAAGTCGGTACCTTGGGTAGTAATGGGTCGGTATCTTCGG
TACCTTGGGGCGGGCGGCTTTCGGGCTATTGGGTTCCTTTGCTGTCGCTCATAACCAACTTTCCC
GCCCGCCCCCCCAGTTATTCGTGCCGTTCCCAGAAGTTGGTTGTTTGAATGAGGGCAACTTCTTC
CCCACGCACGAAAAGGCTGGCTTTCATTCGAAACAACCGCAGAAG
Right flanking sequence: Indices 76314 -- 76813
AGAAGGTTATTTCCCCTCCCCCGTGCCTAAAAGGAATGAGTGAACTTTTCCCCACCAACCTTAAA
GTGTGCCTTCACTCCGCTGCGCGAAGTGAAGGCACGGCAACTTTTACGGATAGCAACCTCTTCAC
CCCCTGGCACGAATAGCAACCGGCCCTTCCCCCTGGCACGAATTAACAACAGTTTGCACGAAGAA
CCTTCTGCAAGCAACTCCTGCCTGCCGTGCCGAACTTTAAAAGGCACTGGTTGTTTCGAAGAACA
ACCAACCTTCTGCGCCCTCCGGCCGGCAAACAACCTTCTTGGCACGAAGGACCAGGGCACCCCGG
GGATCATCGCCCGACTGGGAGCACCAAGAGAGAGTTGGGGCCACTATTACCTGACGACAGCCACT
GGCTTTGAGATAGGCCGAACTCCTATCGCGAGAAAGAGCCAAGGCATCCGGCACAGTTACACTCC
AACCAGCCTATTCCCTATACCATGTAGATCAAACCAAGGGGCTGG
Found at i:76980 original size:5 final size:5
Alignment explanation
Indices: 76970--77003 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
76960 CGCAGGGGTT
76970 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
77004 GAGGCAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 76470 -- 76969
TTCCCCCTGGCACGAATTAACAACAGTTTGCACGAAGAACCTTCTGCAAGCAACTCCTGCCTGCC
GTGCCGAACTTTAAAAGGCACTGGTTGTTTCGAAGAACAACCAACCTTCTGCGCCCTCCGGCCGG
CAAACAACCTTCTTGGCACGAAGGACCAGGGCACCCCGGGGATCATCGCCCGACTGGGAGCACCA
AGAGAGAGTTGGGGCCACTATTACCTGACGACAGCCACTGGCTTTGAGATAGGCCGAACTCCTAT
CGCGAGAAAGAGCCAAGGCATCCGGCACAGTTACACTCCAACCAGCCTATTCCCTATACCATGTA
GATCAAACCAAGGGGCTGGCTTCACACCCGCCCAGAGGACCTACCTTTGGAACAGAGCCTGTCGG
CGCTTCATACCTATTTGGGTCGGGTCGGGGTCAACGGTCGGGTCGGTAAGAAGACCGGAAACGTC
GCATCAAACCTCACAAGGTATGTGCCTTTACCGAGCGCAGGGGTT
Right flanking sequence: Indices 77004 -- 77503
GAGGCAAAAGGTTGGGTTGCTTACCTTTACCGAGCGTAGCGAGGAACTTTGGAAGTGCAGAAGTC
CCGAGCGCAGGCCCTTTTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGGGAGGTTCAGG
TCTTACCTTTACCGAGCGTAGCGAGGCAAAAGGTTGGGTTGGGTTGGGTTGCTTACCTTTACCGA
GCTTAGCGAGGAACTTTGGGAGTGCAGAAGTCCCGAGCGCAGGGGTTCTCCGAGGTTCAGGTAAG
TGCAGGAGTTCCGAGCGCAGGGCCTTCTGCGAGGTTCAGGGTAAGTGCAGGAGTTCCGAGCGCAG
GGTAACTTTTCCCCTCCCCTGCGAGGTGAAGGGTTTGCGGGTTGTTGGTTTCTTCGCGCAGCTAC
GTGAAGGAGCATGCGGGCTAGGAGGACGCGCCCCACGAACGCAGCACCACACATGCCATTTTTGG
CACTAGACAAACAAAGCGCGAATGTCCCAGACGAGTCCACATAAA
Found at i:77267 original size:43 final size:45
Alignment explanation
Indices: 77219--77330 Score: 174
Period size: 45 Copynumber: 2.5 Consensus size: 45
77209 GAACTTTGGG
* * *
77219 AGTGCAGAAGTCCCGAGCGCAGGG-GTTCTCCGAGGTTCA-GGTA
1 AGTGCAGGAGTTCCGAGCGCAGGGCCTTCTCCGAGGTTCAGGGTA
*
77262 AGTGCAGGAGTTCCGAGCGCAGGGCCTTCTGCGAGGTTCAGGGTA
1 AGTGCAGGAGTTCCGAGCGCAGGGCCTTCTCCGAGGTTCAGGGTA
77307 AGTGCAGGAGTTCCGAGCGCAGGG
1 AGTGCAGGAGTTCCGAGCGCAGGG
77331 TAACTTTTCC
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 22 0.35
44 13 0.21
45 28 0.44
ACGTcount: A:0.20, C:0.22, G:0.40, T:0.18
Consensus pattern (45 bp):
AGTGCAGGAGTTCCGAGCGCAGGGCCTTCTCCGAGGTTCAGGGTA
Left flanking sequence: Indices 76719 -- 77218
CGAACTCCTATCGCGAGAAAGAGCCAAGGCATCCGGCACAGTTACACTCCAACCAGCCTATTCCC
TATACCATGTAGATCAAACCAAGGGGCTGGCTTCACACCCGCCCAGAGGACCTACCTTTGGAACA
GAGCCTGTCGGCGCTTCATACCTATTTGGGTCGGGTCGGGGTCAACGGTCGGGTCGGTAAGAAGA
CCGGAAACGTCGCATCAAACCTCACAAGGTATGTGCCTTTACCGAGCGCAGGGGTTCTCCCCTCC
CCTCCCCTCCCCTCCCCTCCCCTCCGAGGCAAAAGGTTGGGTTGCTTACCTTTACCGAGCGTAGC
GAGGAACTTTGGAAGTGCAGAAGTCCCGAGCGCAGGCCCTTTTCCCCACAAACAACCAACCTTCA
GAGTAATATAAGAGGGAGGTTCAGGTCTTACCTTTACCGAGCGTAGCGAGGCAAAAGGTTGGGTT
GGGTTGGGTTGCTTACCTTTACCGAGCTTAGCGAGGAACTTTGGG
Right flanking sequence: Indices 77331 -- 77830
TAACTTTTCCCCTCCCCTGCGAGGTGAAGGGTTTGCGGGTTGTTGGTTTCTTCGCGCAGCTACGT
GAAGGAGCATGCGGGCTAGGAGGACGCGCCCCACGAACGCAGCACCACACATGCCATTTTTGGCA
CTAGACAAACAAAGCGCGAATGTCCCAGACGAGTCCACATAAAAGAAGGGCGAGACTGCACTACG
ATGGGGGCAGCACCCCGGTATTAAGATGTACCTAGCCCTTGAAAACGCAGGAACTATCCCGGGGG
GGGCGCGATACAGATGGTTGCGACAACAACCGATACCGAGCGATCCGAAATACAAGGCCTGCCAA
GGTACTACCTATTACCAACCAACAAAGGCACATACCTTGACCGAGCGCAGGGGTTCTCCGAGGAA
CTTCTTGGCACCGGCAAAGTATTTTTTACCACCAACACAGAGCGCAGGGGAAGAGGTCTGCTAGA
GTGTCCAGCTTTTGACTCTGACATGCCAGGGGGGAAGAAGAGGCC
Found at i:79911 original size:21 final size:21
Alignment explanation
Indices: 79887--79931 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
79877 AGGCAATGAT
* * *
79887 AACCCAACCGATGCGATCCCA
1 AACCCAACCAATGCAACCCCA
79908 AACCCAACCAATGCAACCCCA
1 AACCCAACCAATGCAACCCCA
79929 AAC
1 AAC
79932 AAGATTCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.44, G:0.09, T:0.07
Consensus pattern (21 bp):
AACCCAACCAATGCAACCCCA
Left flanking sequence: Indices 79387 -- 79886
ACACGTTAGGGCCGGTGCAAGCACGAGGAAGTTATTATCCTTATTACCCGACAATCTTTCCGCAG
GCAAGTCCCCATTGAGTGAGCTTTGAGCGCTGTAACGCTCAGCTCGTCATGCGGTACCTTCGCCA
GGATTCGGTATCCTTCAATGAATTGGTACCTTCGGTACCCAGGAGAAGCTAATCATATACGCTCA
GCTCATAATTAAGAGGTCTTCCCCCGGGATTTGACACAATGAGCCTATGGAAGGTACAAGGCAGG
ACCATAACTAAGAGATAGTTTATTGGTAGTTCAGAAGGAGAACACATGAGGTCTTCACCTGTGAG
CGCACAGTGTGTGATGTGTCGACACGAAGCGTGTCGGTTAGGGCCTGAGAGTTAGTTCCCTACGC
CTAGCTCGACCCAGCCTGGCGCCCGCCCTTAGAGCTTGACCCACGCAACTTAAGCTTAGCTTAAG
CCCAACCGGGAAGAGGCGATCCTGAGCCCAAGCCAAGGCAATGAT
Right flanking sequence: Indices 79932 -- 80431
AAGATTCTTTGCCAATACGATCCCAAGCCCAAAGGCAAGGGCTAGTTTTGGCAAAAAAGGTTGGT
TGTTTGGTAGTTAGTTTGAGGGAAGTTGGAAGGCAAGGGGTTTGACAGTTGTGGGGGAAGACAAC
CTGGATCCCGACTTTGTCAGGTATGTGCCTTTACCGAGCGCAGGGGAAGAGGTTCAGGGGGCCGC
CCGGGTTATAGATTTTACGGAAAGTCAGTACGGCTTCCCAACCCAACCTAACTTTTATCCTTAGA
GGCACATACCTTGACCGAGCGCAGGGGTTCTCCGAGGAACTTCTTGGGATAGAAGTTCCCTTTCG
CCCCCTTCAATTTACTTCAACCGAAAGGGGATAGACCCCCTACTTATCAAATCCCATAAGCCGAT
GCGATCCTAAGCTCTTTTTTAGGCCGTTCCGCAGAAGGGCTTCCCTTCCCTTCCCTTCCCTTCCC
TTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCGGTGCTCGG
Found at i:80371 original size:5 final size:5
Alignment explanation
Indices: 80361--80421 Score: 122
Period size: 5 Copynumber: 12.2 Consensus size: 5
80351 CGCAGAAGGG
80361 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC
80411 CTTCC CTTCC C
1 CTTCC CTTCC C
80422 CGGTGCTCGG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 56 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 79861 -- 80360
TCCTGAGCCCAAGCCAAGGCAATGATAACCCAACCGATGCGATCCCAAACCCAACCAATGCAACC
CCAAACAAGATTCTTTGCCAATACGATCCCAAGCCCAAAGGCAAGGGCTAGTTTTGGCAAAAAAG
GTTGGTTGTTTGGTAGTTAGTTTGAGGGAAGTTGGAAGGCAAGGGGTTTGACAGTTGTGGGGGAA
GACAACCTGGATCCCGACTTTGTCAGGTATGTGCCTTTACCGAGCGCAGGGGAAGAGGTTCAGGG
GGCCGCCCGGGTTATAGATTTTACGGAAAGTCAGTACGGCTTCCCAACCCAACCTAACTTTTATC
CTTAGAGGCACATACCTTGACCGAGCGCAGGGGTTCTCCGAGGAACTTCTTGGGATAGAAGTTCC
CTTTCGCCCCCTTCAATTTACTTCAACCGAAAGGGGATAGACCCCCTACTTATCAAATCCCATAA
GCCGATGCGATCCTAAGCTCTTTTTTAGGCCGTTCCGCAGAAGGG
Right flanking sequence: Indices 80422 -- 80921
CGGTGCTCGGAGAACTTACACCCTTCTGCACATACAGTTGCAGAAGGCACATACCTTGACCGAGC
GCAGGGGTAACTTTTCCCCACAAACTTCAGAGGAATATAAGAGGGAGGTGGGAAGTTCTTCTGCT
TCCCCCGCAGCCCCAACTCCTGGCTCGGTCAAGGCACATACCTACGTTTAGCTCTAGCTACGCTT
GGCTTATCTACCGTTCCCCTAGTCCTATCCGTTCATAAGATATCTGCGCCGGCTGCAAGGTTGTT
CTCGACGTGAGCTATACCTGTTCCTTGGCCTAAGCGAGACTTGGGCTACCTAAGCTAGGCTTTAT
CTCGACCTAGCCCTGAAGTTAGTTAGTTCCCCACCGTAGTGACCTATACCTGTTCCCTACCTACG
TGAGCTATACCCTAACGGACGCCACGTGACGCCGTTCCCTATCCGCGGGGCATGAGGGGATGAGC
TCCGTTCCTCAGCCTAAGCGATGCTCACGCCACCGCTTATCCGTA
Found at i:80814 original size:26 final size:26
Alignment explanation
Indices: 80772--80822 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
80762 AAGTTAGTTA
80772 GTTCCCCACCGTAGTGACCTATACCT
1 GTTCCCCACCGTAGTGACCTATACCT
* *
80798 GTTCCCTACC-TACGTGAGCTATACC
1 GTTCCCCACCGTA-GTGACCTATACC
80823 CTAACGGACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.20, C:0.37, G:0.16, T:0.27
Consensus pattern (26 bp):
GTTCCCCACCGTAGTGACCTATACCT
Left flanking sequence: Indices 80272 -- 80771
TTCAACCGAAAGGGGATAGACCCCCTACTTATCAAATCCCATAAGCCGATGCGATCCTAAGCTCT
TTTTTAGGCCGTTCCGCAGAAGGGCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCC
TTCCCTTCCCTTCCCTTCCCCGGTGCTCGGAGAACTTACACCCTTCTGCACATACAGTTGCAGAA
GGCACATACCTTGACCGAGCGCAGGGGTAACTTTTCCCCACAAACTTCAGAGGAATATAAGAGGG
AGGTGGGAAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTCAAGGCACATACCTAC
GTTTAGCTCTAGCTACGCTTGGCTTATCTACCGTTCCCCTAGTCCTATCCGTTCATAAGATATCT
GCGCCGGCTGCAAGGTTGTTCTCGACGTGAGCTATACCTGTTCCTTGGCCTAAGCGAGACTTGGG
CTACCTAAGCTAGGCTTTATCTCGACCTAGCCCTGAAGTTAGTTA
Right flanking sequence: Indices 80823 -- 81322
CTAACGGACGCCACGTGACGCCGTTCCCTATCCGCGGGGCATGAGGGGATGAGCTCCGTTCCTCA
GCCTAAGCGATGCTCACGCCACCGCTTATCCGTACCGCTTAGGTTATCGAATCCCCCCCCTGCGC
TTAGCTTAACCTAGGCCTACCCTGCTTAGCCTACCCTACCCTACCCCAGTTTAAAGGTGTACCTT
CGTGAAAGCCGGAAACCTTGGGTCTTGCACCTTGGATCCGTTGGTCTCCGACTTTCCTTCGTGGG
AAACACCCACCTGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGG
GAGGGGATGTTATCTCGGGGGAATCAGTGCTTCGGTCTTCGAAAGGAAAGGGCCCCCTCTCTAAT
CAATTGTGCCGGGGGACTCTCTTTCTTTCTCTCTCTCTTTCTTTGTTTCTTTCCCGGGGTAAGTA
ATGTATTCCCGGGGTAAGGACTCAAGTTTGAGGTTTTTTCCTGAC
Found at i:80985 original size:20 final size:19
Alignment explanation
Indices: 80956--80994 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
80946 CCTGCGCTTA
*
80956 GCTTAACCTAGGCCTACCCT
1 GCTTAACCTA-CCCTACCCT
*
80976 GCTTAGCCTACCCTACCCT
1 GCTTAACCTACCCTACCCT
80995 ACCCCAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.18, C:0.44, G:0.13, T:0.26
Consensus pattern (19 bp):
GCTTAACCTACCCTACCCT
Left flanking sequence: Indices 80456 -- 80955
CAGTTGCAGAAGGCACATACCTTGACCGAGCGCAGGGGTAACTTTTCCCCACAAACTTCAGAGGA
ATATAAGAGGGAGGTGGGAAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTCAAGG
CACATACCTACGTTTAGCTCTAGCTACGCTTGGCTTATCTACCGTTCCCCTAGTCCTATCCGTTC
ATAAGATATCTGCGCCGGCTGCAAGGTTGTTCTCGACGTGAGCTATACCTGTTCCTTGGCCTAAG
CGAGACTTGGGCTACCTAAGCTAGGCTTTATCTCGACCTAGCCCTGAAGTTAGTTAGTTCCCCAC
CGTAGTGACCTATACCTGTTCCCTACCTACGTGAGCTATACCCTAACGGACGCCACGTGACGCCG
TTCCCTATCCGCGGGGCATGAGGGGATGAGCTCCGTTCCTCAGCCTAAGCGATGCTCACGCCACC
GCTTATCCGTACCGCTTAGGTTATCGAATCCCCCCCCTGCGCTTA
Right flanking sequence: Indices 80995 -- 81494
ACCCCAGTTTAAAGGTGTACCTTCGTGAAAGCCGGAAACCTTGGGTCTTGCACCTTGGATCCGTT
GGTCTCCGACTTTCCTTCGTGGGAAACACCCACCTGGGGAGGGGAGGGGAGGGGAGGGGAGGGGA
GGGGAGGGGAGGGGAGGGGAGGGGAGGGGATGTTATCTCGGGGGAATCAGTGCTTCGGTCTTCGA
AAGGAAAGGGCCCCCTCTCTAATCAATTGTGCCGGGGGACTCTCTTTCTTTCTCTCTCTCTTTCT
TTGTTTCTTTCCCGGGGTAAGTAATGTATTCCCGGGGTAAGGACTCAAGTTTGAGGTTTTTTCCT
GACTTTGGCCCGGGTAAAGGAAGCAGAAGTTTGGGGCCCCGGGTTATTTGTCCCAGGTAAAGCGC
AGGGGAAGAGTAGGCCTCCCATCGAAAGAGATCCTCTTCACGTAGCGGGCTGCTTTAGGTAAGTC
CCAGTTTTCCGGGGCAGGGGTAAGGTGTCTTTGGGTGGAAGAGTT
Found at i:80990 original size:25 final size:24
Alignment explanation
Indices: 80951--80998 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
80941 CCCCCCCTGC
* *
80951 GCTTAGCTTAACCTAGGCCTACCCT
1 GCTTAGCCTAACCTA-CCCTACCCT
*
80976 GCTTAGCCTACCCTACCCTACCC
1 GCTTAGCCTAACCTACCCTACCC
80999 CAGTTTAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.19, C:0.44, G:0.12, T:0.25
Consensus pattern (24 bp):
GCTTAGCCTAACCTACCCTACCCT
Left flanking sequence: Indices 80451 -- 80950
ACATACAGTTGCAGAAGGCACATACCTTGACCGAGCGCAGGGGTAACTTTTCCCCACAAACTTCA
GAGGAATATAAGAGGGAGGTGGGAAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGT
CAAGGCACATACCTACGTTTAGCTCTAGCTACGCTTGGCTTATCTACCGTTCCCCTAGTCCTATC
CGTTCATAAGATATCTGCGCCGGCTGCAAGGTTGTTCTCGACGTGAGCTATACCTGTTCCTTGGC
CTAAGCGAGACTTGGGCTACCTAAGCTAGGCTTTATCTCGACCTAGCCCTGAAGTTAGTTAGTTC
CCCACCGTAGTGACCTATACCTGTTCCCTACCTACGTGAGCTATACCCTAACGGACGCCACGTGA
CGCCGTTCCCTATCCGCGGGGCATGAGGGGATGAGCTCCGTTCCTCAGCCTAAGCGATGCTCACG
CCACCGCTTATCCGTACCGCTTAGGTTATCGAATCCCCCCCCTGC
Right flanking sequence: Indices 80999 -- 81498
CAGTTTAAAGGTGTACCTTCGTGAAAGCCGGAAACCTTGGGTCTTGCACCTTGGATCCGTTGGTC
TCCGACTTTCCTTCGTGGGAAACACCCACCTGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGG
AGGGGAGGGGAGGGGAGGGGAGGGGATGTTATCTCGGGGGAATCAGTGCTTCGGTCTTCGAAAGG
AAAGGGCCCCCTCTCTAATCAATTGTGCCGGGGGACTCTCTTTCTTTCTCTCTCTCTTTCTTTGT
TTCTTTCCCGGGGTAAGTAATGTATTCCCGGGGTAAGGACTCAAGTTTGAGGTTTTTTCCTGACT
TTGGCCCGGGTAAAGGAAGCAGAAGTTTGGGGCCCCGGGTTATTTGTCCCAGGTAAAGCGCAGGG
GAAGAGTAGGCCTCCCATCGAAAGAGATCCTCTTCACGTAGCGGGCTGCTTTAGGTAAGTCCCAG
TTTTCCGGGGCAGGGGTAAGGTGTCTTTGGGTGGAAGAGTTCCTC
Found at i:81105 original size:5 final size:5
Alignment explanation
Indices: 81095--81154 Score: 120
Period size: 5 Copynumber: 12.0 Consensus size: 5
81085 ACACCCACCT
81095 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
81145 GGGGA GGGGA
1 GGGGA GGGGA
81155 TGTTATCTCG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 55 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 80595 -- 81094
ACGTTTAGCTCTAGCTACGCTTGGCTTATCTACCGTTCCCCTAGTCCTATCCGTTCATAAGATAT
CTGCGCCGGCTGCAAGGTTGTTCTCGACGTGAGCTATACCTGTTCCTTGGCCTAAGCGAGACTTG
GGCTACCTAAGCTAGGCTTTATCTCGACCTAGCCCTGAAGTTAGTTAGTTCCCCACCGTAGTGAC
CTATACCTGTTCCCTACCTACGTGAGCTATACCCTAACGGACGCCACGTGACGCCGTTCCCTATC
CGCGGGGCATGAGGGGATGAGCTCCGTTCCTCAGCCTAAGCGATGCTCACGCCACCGCTTATCCG
TACCGCTTAGGTTATCGAATCCCCCCCCTGCGCTTAGCTTAACCTAGGCCTACCCTGCTTAGCCT
ACCCTACCCTACCCCAGTTTAAAGGTGTACCTTCGTGAAAGCCGGAAACCTTGGGTCTTGCACCT
TGGATCCGTTGGTCTCCGACTTTCCTTCGTGGGAAACACCCACCT
Right flanking sequence: Indices 81155 -- 81654
TGTTATCTCGGGGGAATCAGTGCTTCGGTCTTCGAAAGGAAAGGGCCCCCTCTCTAATCAATTGT
GCCGGGGGACTCTCTTTCTTTCTCTCTCTCTTTCTTTGTTTCTTTCCCGGGGTAAGTAATGTATT
CCCGGGGTAAGGACTCAAGTTTGAGGTTTTTTCCTGACTTTGGCCCGGGTAAAGGAAGCAGAAGT
TTGGGGCCCCGGGTTATTTGTCCCAGGTAAAGCGCAGGGGAAGAGTAGGCCTCCCATCGAAAGAG
ATCCTCTTCACGTAGCGGGCTGCTTTAGGTAAGTCCCAGTTTTCCGGGGCAGGGGTAAGGTGTCT
TTGGGTGGAAGAGTTCCTCTTCCTGGGTAAGGTGTGTGTTTCCTAGTGGTAGGAGTAAGTACCTG
GTAAAGTACTCCCCCCGGCCGTAGTCCTTCTCCGGTGCCCGGGTTTCCAAAGCAAAGTGTGATTC
CTGGTTCAAGGACGGATTTCCAAAAGCAGAAGTCTGAGCGCAGCA
Found at i:82140 original size:5 final size:5
Alignment explanation
Indices: 82130--82187 Score: 80
Period size: 5 Copynumber: 11.4 Consensus size: 5
82120 AAGGCCCAGG
** *
82130 CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCTGGA ACTTC CCTTC
1 CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCT-TC CCTTC CCTTC
82181 CCTTC CC
1 CCTTC CC
82188 GAGTGGACCG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 44 0.96
6 2 0.04
ACGTcount: A:0.03, C:0.57, G:0.03, T:0.36
Consensus pattern (5 bp):
CCTTC
Left flanking sequence: Indices 81630 -- 82129
CAAAAGCAGAAGTCTGAGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGT
ATTCCACTCCAAACTTCTGCTTCGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACGG
GGGAACAGGCAGAAACAAACTTTTGGGCCAGAAAGGGTTGGGCAGAACTTCTGCTTCGCGCAGGG
GAAGAGGTTCTTGTTGGGCGGTTCTTCGCGCAGCGGAGTGAAGGAATCAATCCCGAGTAAAGCGT
AGTGAGGAGGGCTCTCGACCTACAGTAGAGAGCGGTCCTGACGTATCGGGCATTGTGTAAGAGTG
CCTCTTTCCGAGGCCTTCCCCCGGGGAATATAATCCGTTCCGGATTCCTGGGGCAAGAACCAAAG
GTATGTGCAGAAGGGTGTTCTCCGAGCGCAGCGAGGTTAAGGGTTCGGGGTAAAGGAATCCTTCC
GGTAAATAATCTTGTTCCGGGCAACTACGGTATCCAAGGCCCAGG
Right flanking sequence: Indices 82188 -- 82687
GAGTGGACCGTTTAAGCAAACATCCGTGCCTTCGCAAGCAAGCAACTTTTGCCCAGCCGTTCACC
TGCTTGGAGAAACCAACACGCAACCCAAGAAGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCT
CTGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACACCCTTCTGCAACCAACTGAA
CCTTTTGCAACCCCCGTTGCACTCTTTTTTGCTTGCTTGCACGGGGGAATAGGTAGGACGGATTT
CCTTCGCTCCGCTGCGCGAAGCAAAAGTTCTTTCTTGGTTCCAGGGATCTTTCTTGCAAAAGAGC
AAGCAAGCAAGCTTTTCCCGCCCGCCATAAGAGTTCACCTGCTTGGAGAAACCAACACGCAACCC
GCACTCTTTTTTTGTTCACACCTTTCTAAACCCCGTGCCAGCCTACCTTTGTAAGCGAAACAACC
TGTTCCCGCACGTGCAGAAGGTTGAAAGTTGGAACCAAAACTTCT
Found at i:86941 original size:16 final size:16
Alignment explanation
Indices: 86920--86976 Score: 114
Period size: 16 Copynumber: 3.6 Consensus size: 16
86910 GCACCGGGGA
86920 AGGGAAGGGAAGTTCC
1 AGGGAAGGGAAGTTCC
86936 AGGGAAGGGAAGTTCC
1 AGGGAAGGGAAGTTCC
86952 AGGGAAGGGAAGTTCC
1 AGGGAAGGGAAGTTCC
86968 AGGGAAGGG
1 AGGGAAGGG
86977 CCCTTCTGCG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.32, C:0.11, G:0.47, T:0.11
Consensus pattern (16 bp):
AGGGAAGGGAAGTTCC
Left flanking sequence: Indices 86420 -- 86919
TTGTCCCGTGCACCCCTGCCGTGTCCTTCGGACCCGGGGGCTTCACCCTTTGACGGGATAGTGGA
TGGCGGCCGAGTGGATGGCCAAAAAGGTATGTGCCTTTACCGAGCCAGGAGTTGGGGCTGCGGGG
GAAGCAGAATAACTTCCCACCTCTCCCCCTGCGCTCGGTCAAGGTATGTGCCTTCTGCAACTGTA
TGTGCAGAAGGGTGTAAGTTCTCCGAGCACCGGGGAAGGGAAGGGAAGCCCTTCTGCGGAAGAGC
TCCTTTCGGTGCGGGGGAAGCAGTGGAAAGCCGGATTGAAAGCGCGCGCTTCTTGTAGCGATTTA
CCAACTCTCTTCCCCCAGGGCGGGCGGGGAGGTGGCAGGAGTTTGGAAGTTCTTGACCGAGCCAG
GAGTTGGGGCTGCGAGCCTTCTGCCTGCCACCTAGCAGAAGGCCCCTGCGCTCGGTCAAGGTATG
TGCCTTCTGCAACTGTATGTGCAGAAGTTCTCCGAGCACCGGGGA
Right flanking sequence: Indices 86977 -- 87476
CCCTTCTGCGAGGTGGCAGGGAGAGTGGGACAACTTGGATCCCGACGGGAGCCAGGCCGGGCGGG
TTCAGACCCGGTCAGAGGAATAGTGGCGAGGCGCTTCCCCCGGCACGTGTTTCCGCCGTCAAGCG
TTTAACCGCCTAAAAAACCTGGCAGCCCGACCGGGCATCCACTCTCCCCCTTCCTTGATTCACCG
AAGGTTGAGGAACGAAGGTTCAGAGTACTACTCTTCTCTCAAAGGGGTCGGAGTCCTACTCTCTT
ACCCGAAGGCAGAGAGGTTCTCCCTTAGATACTGAGGAGGGGATAGATTGGATTGAACACACAAA
CCTTTAATCAATTCAACCACTGTTCCCTGTACCTTGATAGTAGATCTATACTATCCTGGCACACC
TCTCTAACTATCCCTTGAAGGGAGGAAAGGGAGGAGACCGATGGGAGGGGGGCCAACCCCTACGA
AAGGTGTCCGTGGGGGCCGGCCTTTCAACCTTCACCCCAAACCCC
Found at i:88500 original size:32 final size:32
Alignment explanation
Indices: 88464--88543 Score: 142
Period size: 32 Copynumber: 2.5 Consensus size: 32
88454 AAGCCTCAAA
88464 AAGGGGACCTCCAACTGAAGGGTCACATCTTT
1 AAGGGGACCTCCAACTGAAGGGTCACATCTTT
88496 AAGGGGACCTCCAACTGAAGGGTCACATCTTT
1 AAGGGGACCTCCAACTGAAGGGTCACATCTTT
* *
88528 ATGGGGACTTCCAACT
1 AAGGGGACCTCCAACT
88544 TTCGGAAGGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (32 bp):
AAGGGGACCTCCAACTGAAGGGTCACATCTTT
Left flanking sequence: Indices 87964 -- 88463
TTTGGAACCCCTTCAAAATTGGGTAGATTAGTAATGAGATTATCATGGACAGTATACATGGAACC
AAAGGGCCTTTCCTCAAGGAAAGCCTGAACTACTTTCATTGCAATATAGGCGTCCCGGATAAGAT
TAGCGCAGGTGGACATTTTGGATTTTATCCTGTCTCTATTAGTGGTGGGCAAATTCAAGGTAATC
TTATGCCGAGTAGCCTTGACTTGCCCTTTCTTCCTGACGTGGATCCAGACACAACTCTTCTCAAA
GCGCGTATAGTCTTGCGTAGTAAGAAGGAAAGGTACACTGAATTGAACGGCTCTATCCTATGTAT
TGAAGAGCTCTCCAACCGGGTTCGTTTGGTGTTCGGGAGACTACCAACTGGTCTAATGATGGGCA
TCCCTGGCTCCTATCGGAGAAGAGCTCGCCAACCGGGTTCGTTTAGGGGTTCGGGAGGGCCGGGT
TCATTCAAGTGAGAACCAGGCTCGGGTAGCCCTGAAAGCCTCAAA
Right flanking sequence: Indices 88544 -- 89043
TTCGGAAGGGTCAAAATGGGAACTGAATGGTCAAAATGGGAACTGAATGGGCTCCTGACAGTTGG
GGTTCGGGAGGAAGAGAAGAGGTCATCCCTGGCTCGAATAGGACGAGCTCAGCAACAAGGAACCT
GGCAACAGATGGATGCAGTTCAAGAACCAAGAATTGAGTAAGTAGAAGACGGCATGGGTTAAGGG
CTTAGATAAGGTAACGGGGGAAAAGGTGGAGGAAGGAAATTCCCCGCAGCCTGTCTTCGGAGCCC
TGAACCTCTCTCTTATATCCCTCTTCAGGTTGTTTGTGGGGAGAACCCCTGCGCTCGGTAAAGGC
ACATACCTCGGTAAAGGCCCTAATGGTAGCCTTAAGGCCAAATACTAAAACTTAAAGCCATTCGC
CGTCGTCTTCCCCGGAGCTAATGTACGACTTATCTAAAACGCACAAGTGCTGCCAGTCATCCGAT
CCCGGTTTGTCCGGAAAGGGAAGACCTCCTACACGTCAAAAACTG
Found at i:88577 original size:20 final size:20
Alignment explanation
Indices: 88552--88593 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
88542 CTTTCGGAAG
88552 GGTCAAAATGGGAACTGAAT
1 GGTCAAAATGGGAACTGAAT
88572 GGTCAAAATGGGAACTGAAT
1 GGTCAAAATGGGAACTGAAT
88592 GG
1 GG
88594 GCTCCTGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.33, T:0.19
Consensus pattern (20 bp):
GGTCAAAATGGGAACTGAAT
Left flanking sequence: Indices 88052 -- 88551
CCTGAACTACTTTCATTGCAATATAGGCGTCCCGGATAAGATTAGCGCAGGTGGACATTTTGGAT
TTTATCCTGTCTCTATTAGTGGTGGGCAAATTCAAGGTAATCTTATGCCGAGTAGCCTTGACTTG
CCCTTTCTTCCTGACGTGGATCCAGACACAACTCTTCTCAAAGCGCGTATAGTCTTGCGTAGTAA
GAAGGAAAGGTACACTGAATTGAACGGCTCTATCCTATGTATTGAAGAGCTCTCCAACCGGGTTC
GTTTGGTGTTCGGGAGACTACCAACTGGTCTAATGATGGGCATCCCTGGCTCCTATCGGAGAAGA
GCTCGCCAACCGGGTTCGTTTAGGGGTTCGGGAGGGCCGGGTTCATTCAAGTGAGAACCAGGCTC
GGGTAGCCCTGAAAGCCTCAAAAAGGGGACCTCCAACTGAAGGGTCACATCTTTAAGGGGACCTC
CAACTGAAGGGTCACATCTTTATGGGGACTTCCAACTTTCGGAAG
Right flanking sequence: Indices 88594 -- 89093
GCTCCTGACAGTTGGGGTTCGGGAGGAAGAGAAGAGGTCATCCCTGGCTCGAATAGGACGAGCTC
AGCAACAAGGAACCTGGCAACAGATGGATGCAGTTCAAGAACCAAGAATTGAGTAAGTAGAAGAC
GGCATGGGTTAAGGGCTTAGATAAGGTAACGGGGGAAAAGGTGGAGGAAGGAAATTCCCCGCAGC
CTGTCTTCGGAGCCCTGAACCTCTCTCTTATATCCCTCTTCAGGTTGTTTGTGGGGAGAACCCCT
GCGCTCGGTAAAGGCACATACCTCGGTAAAGGCCCTAATGGTAGCCTTAAGGCCAAATACTAAAA
CTTAAAGCCATTCGCCGTCGTCTTCCCCGGAGCTAATGTACGACTTATCTAAAACGCACAAGTGC
TGCCAGTCATCCGATCCCGGTTTGTCCGGAAAGGGAAGACCTCCTACACGTCAAAAACTGACTCA
AAACTTGACTCAAAAAGAGCGACCCGATCCGACTTGGTCAGAGCA
Found at i:89677 original size:3 final size:3
Alignment explanation
Indices: 89669--89705 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
89659 CGAGGGCTTC
89669 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
89706 CAAGATTATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Left flanking sequence: Indices 89169 -- 89668
TTTCAACACCCAGATCCGTAGTCTGATACTCTATCCGATTGAGCTACAAGCACCTCCAGTACGTT
TCACCGGCCCCCCTGCCACCTCTTCCCCTGCGCTCGGTCAAGGCACATACCTTTTTGTTTTTTCA
TTCAGATTCTGATTCGCTATCTTCTATTTTACCACGACTACCTTTTATGAAGGGACTTAAAGAGT
TCAGAGGAAGTCCCTCTTTAGGCCCTAAGATCGCTTCTAAGGCTCGCTTTCTATCCTCCGCCTTT
GACTGTTGGGAAGCTTGGCTACCAGGCTTCTCTTCCATCATTCTATTATTCTGCATATTACCAAA
AACTTCTCCTATTTCGGTATTTGGACCAAAAAAAATACATGGTCCTGCATTTGTTTATCACTTAG
AACTTTATCCAATTCCTCGAATCTCTAAAAAGTTGCTCCATGAGTTCAATACGTTTCTCAAGAAG
CTCTAACCTCTTTAGTTTAGAAGGAGCTCCTTCTGCGAGGGCTTC
Right flanking sequence: Indices 89706 -- 90205
CAAGATTATCCATATCCAGTTCAATCTTTTATGAAGGGACAGCATGGGTGTTTGTTGTTGTTGCC
TGGAAGCCTAAGAATGGATACAACTTACTCTATAAGGGGAAAAAGGGGGAAAGGGGAAAGGGAAA
GGGGCCAGCCAGCCGGAGGAAAAAAGGGAAAGCCAGCCCTTCCCCCGTCCGAAAAAAAGGGAAAG
GGAAAAGGGAAAGGGGCCAGCCAGCCTCCCGTCCGGAAATTACTCTATAAGGGGAACAAAAGGGG
TAATGGATTTTCGTTAGCTTCGACTGGCTATGTAAAGGGGGTTGGCAGAATTAATTTATGCGAGG
AGCTGCTGGAACTGCAGAGGCGGATCGGTCATTAGAATTACTTTGTTGGATGCTATTTCTTCGCA
AGCCCCTGAACCTCTCTCTTATATCCCTCTGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGT
AAAGGCACATACCTTGGAAGTTCCAAGGCCTTGGGCCTAGGTAAG
Found at i:89908 original size:13 final size:13
Alignment explanation
Indices: 89890--89915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
89880 CCGTCCGAAA
89890 AAAAGGGAAAGGG
1 AAAAGGGAAAGGG
89903 AAAAGGGAAAGGG
1 AAAAGGGAAAGGG
89916 GCCAGCCAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (13 bp):
AAAAGGGAAAGGG
Left flanking sequence: Indices 89390 -- 89889
AAGATCGCTTCTAAGGCTCGCTTTCTATCCTCCGCCTTTGACTGTTGGGAAGCTTGGCTACCAGG
CTTCTCTTCCATCATTCTATTATTCTGCATATTACCAAAAACTTCTCCTATTTCGGTATTTGGAC
CAAAAAAAATACATGGTCCTGCATTTGTTTATCACTTAGAACTTTATCCAATTCCTCGAATCTCT
AAAAAGTTGCTCCATGAGTTCAATACGTTTCTCAAGAAGCTCTAACCTCTTTAGTTTAGAAGGAG
CTCCTTCTGCGAGGGCTTCTTATTATTATTATTATTATTATTATTATTATTATTATCAAGATTAT
CCATATCCAGTTCAATCTTTTATGAAGGGACAGCATGGGTGTTTGTTGTTGTTGCCTGGAAGCCT
AAGAATGGATACAACTTACTCTATAAGGGGAAAAAGGGGGAAAGGGGAAAGGGAAAGGGGCCAGC
CAGCCGGAGGAAAAAAGGGAAAGCCAGCCCTTCCCCCGTCCGAAA
Right flanking sequence: Indices 89916 -- 90415
GCCAGCCAGCCTCCCGTCCGGAAATTACTCTATAAGGGGAACAAAAGGGGTAATGGATTTTCGTT
AGCTTCGACTGGCTATGTAAAGGGGGTTGGCAGAATTAATTTATGCGAGGAGCTGCTGGAACTGC
AGAGGCGGATCGGTCATTAGAATTACTTTGTTGGATGCTATTTCTTCGCAAGCCCCTGAACCTCT
CTCTTATATCCCTCTGAAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGGCACATACCTT
GGAAGTTCCAAGGCCTTGGGCCTAGGTAAGAAGGGTGCAGTTACGTTTCCATGGCCCGGCCATGC
TTCTGGGTGTCGTGTCCCTATAGGTGTCGTGTCCAGAGCCTCTTGGCCAAATAGCGGGGTTGTGA
GAGATCGCTTGCTTCCAAAGCTCTGGCGCATCGAAGAGGTACTTCGACAAAGAAGTTTCGCGAGC
GGGAGTTCTTATTGATCGATCTCTTCGCTAGTGTGTTCCCATCTC
Found at i:90904 original size:4 final size:4
Alignment explanation
Indices: 90895--90990 Score: 192
Period size: 4 Copynumber: 24.0 Consensus size: 4
90885 TGGCAATGAA
90895 ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT
1 ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT
90943 ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT
1 ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT ACTT
90991 TTGCTTAAAA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 92 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
ACTT
Left flanking sequence: Indices 90395 -- 90894
TCGCTAGTGTGTTCCCATCTCTTCGGTCATTCCTGTCAGTCGTTGCCCTCGGTCGGAATAACGAA
CTACAGAACGATCGGAACGAAAGCGAAGCGAAGCGGGACGAAATGGAACGAGCAGAGCTTGGAGA
GAGCGAATCCGGGTGGGCCATGAAGAAGCAGATTAGTGAGCCGGCCGGCATTGAAGGTCACGTAG
AGTACAAGGCCCGAATAAACTAACTTCTGGTATTTGTCAGTCAGAAAGGTTCTTCAAAGAACCTT
TGAGGATTTGGTTCAATGAATGGTCTAGGTTCTTTTGAGAGCGTAAATGTGTGTTCTCCTCTACT
ACGATGCCGCATTCGAGATTTATTTCTATTCATTTATTATTTATGAATTTGGGTCAGAACTTTTA
TCACGTACATAGAAGTATGATCCAACACTAAAAAGCTCTGCAGTTCGGGTTCTCAAGCTTTGGGG
TTAGGACATGCTGTGTGGTGTGCGCGTCATTTGATTGGCAATGAA
Right flanking sequence: Indices 90991 -- 91490
TTGCTTAAAAGTTGGCAGATGATTCTATTCATAGCGAGAAACCGTGCTTGCAGCAGATGGTTCAG
GCCTATGAAAAGTGCGGCGGCAACCCTTACAGGTTGCTGTCATGAACGTCGATCGATCTCATGTG
AATCGTTACGGCATTGGGGAAGGATATTGCTCAGGAAAAAAGTCCACTGGTTGAGGTTCGCGGGG
GAAGTGGTGGAGAAACCTCATCCAGATAAGGCGCCTTCCAATCTTGCCAGCCATTATTGGACGGG
CGTGTGTTTGAATGCGACAAGTATTCAATTATTTGGAATCTCAAGCGGGAGGGGAGGAGAAATCC
AATTGACTGATGCTTTGAGTCATCTCATTTCACTTTTTATGGTTTTCGCTTTGAGGGGAAACGGA
TTGTGGTTCCAGGGAAGGCTTATTGATGGCAAGTTTGGCTGTGGCCTTAAGTATTGCGGGAAGAT
TTATCAAATAACGTGCTCTCTGAACTTCAATCTCTCCTGAAGGTT
Found at i:92443 original size:8 final size:8
Alignment explanation
Indices: 92430--92480 Score: 102
Period size: 8 Copynumber: 6.4 Consensus size: 8
92420 TGGAAAGCAA
92430 CTTGATTT
1 CTTGATTT
92438 CTTGATTT
1 CTTGATTT
92446 CTTGATTT
1 CTTGATTT
92454 CTTGATTT
1 CTTGATTT
92462 CTTGATTT
1 CTTGATTT
92470 CTTGATTT
1 CTTGATTT
92478 CTT
1 CTT
92481 TGAAGGTATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 43 1.00
ACGTcount: A:0.12, C:0.14, G:0.12, T:0.63
Consensus pattern (8 bp):
CTTGATTT
Left flanking sequence: Indices 91930 -- 92429
CGGAAAGTAGAACAAACTTTTATAGGTCCGGTCCGGTTTTTCGACCTACCTCAAGCAGGCAGAAT
TTGACGCACGCACGCTTATTGTTGGTTGTCCAATCCCGAGTTTTTGGAGCCATTGAAGATCTTAT
GAAACCGGTCGTGATTGGATCGGAAACAGAGCGTGCAACAGCAGGCGAGAACTCTATCGTCCTCT
TTCCTCTCTTGAAACGCCCATTGTTTTTACATCACTTGAGACAGCAGAGCAGTATGCTTCCAACG
CGAAAAAAATATCGACTAAAATCGCTTTCATTAATGAAATTGCCGACGTGAACAGTGCGGTGCAG
ATGTCCAGGGAGTCGCCAGGGGAATGGGACTTGATAAAAGGATTGGTGAACGCTTTTTAAACGCA
GGACCTGGCTATGGAGGATCCTGTTTTCCCAAGGATACCCTAGCGCTTATTCATACAGCAGACGA
CTATGGAATGAAGGTCAGTATCGTTGATGCTGTCGTGGAAAGCAA
Right flanking sequence: Indices 92481 -- 92980
TGAAGGTATCGGAAACAATCCATGTCAGAAAAGATTACGATGGGGTGCGGGGGATACTTTGCTGA
AGGTCGGGTCGCCCTGAACCTCTTCCCCTGCGCTCGGTAAAGGCACATACCTCTGTATTTTAGGC
GTCACCTTTAAACCTGATACCGATGATATGCGAGATGCGCCCAGTTTGGATATTGTCCCTTCTTT
AATGAAAGCAGGCGCAAAAATTCGCACGCATTTTTGATTTGATCCTCAAGGACAAATCAATCTTT
AAGGTTGGTTGCGCGAAATGCTGCCATCAGGAATAAAATGGTTTGAAGACCCGGCTATTACCGGA
GCAGATGCTGTGGTCATACTGACAGAATGGAATGAGTTTCGGGCGAAGAACTTACTTTTGAAAGA
AATCAAGAAATCAAGTGCCGTGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCTTTCCCTTCCC
CCGTGCCGTTCTTTTTGGACCAAGAAAGGTTGGTTGTTTGTGCGG
Found at i:93484 original size:40 final size:40
Alignment explanation
Indices: 93440--93542 Score: 206
Period size: 40 Copynumber: 2.6 Consensus size: 40
93430 TTTGGAAGTT
93440 CTTTACCGAGCGCAGGGGAAGAGAACTAACTTCTGCGCAC
1 CTTTACCGAGCGCAGGGGAAGAGAACTAACTTCTGCGCAC
93480 CTTTACCGAGCGCAGGGGAAGAGAACTAACTTCTGCGCAC
1 CTTTACCGAGCGCAGGGGAAGAGAACTAACTTCTGCGCAC
93520 CTTTACCGAGCGCAGGGGAAGAG
1 CTTTACCGAGCGCAGGGGAAGAG
93543 GTTAAGGGAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.27, C:0.26, G:0.30, T:0.17
Consensus pattern (40 bp):
CTTTACCGAGCGCAGGGGAAGAGAACTAACTTCTGCGCAC
Left flanking sequence: Indices 92940 -- 93439
GCCGTTCTTTTTGGACCAAGAAAGGTTGGTTGTTTGTGCGGGTTTGTTGTTTTGTTTGTTTGTTG
CTTCGCGCAGCTACCTGAACCAAGAAAGAACTTTTGCTTCGCGCAGCTACCGAAAGTTCGCACTT
CTTGGACCGGACCAAGAAAGTTGTTTGTTTTGTGCGGGTTTGTTGCTTCGCGCAGGGGTTCTCCC
CTCCCCTCCTAGTCTTAATCCGGGGTTTGCAGAAGTTAGTTTTAACCAACCCAAACAACAAACAA
ACAAAACAAACTTCTGCAAAGAAGTTTTGTTTTGGACGGATTTCAAAAAAAGAGTGCAACTGGGG
GAGGGGAATTGGTTGAAACTTCTGCGCAGCGGGGGAAGGCGTGCGAAGGTTCACTTCTAAACCCC
GTGCCAGCCAACTTTAAAGCGGTGTTGCAGGCAGCAGAAGTCTCTTCTGCTTCTGAGCGCAGCGG
GGGAAGGAAAAGCTACCGGGAATACGAGGCAGGAGTTTGGAAGTT
Right flanking sequence: Indices 93543 -- 94042
GTTAAGGGAAAGGGCCTGCTGAAGCTGCTCCGGCCACGGCTGGGGAAGCACTCACTGGAATAGTG
ATCCAGCAGTATAAGGTCGGGAGCCGCCGCCCCCCCCTCCACCGAGCATAAAACGCCGCTTCCCC
CTGAGCGGCAGCCTTAGCGCCTTAGCTGGGATGGCAGCCTTCTTCCCCGGGGGAAAGCTGCGCTC
AGAACTTAAGAGGTTTTTGGCAAAAACAAACTTCTCCGTCAAAAACAAAAGACTTCTTACTTCTG
ACCTGCAACTTTAAAGCCTTAGCGCCGAGATAGGAGATCCAACAACTACGTCAGTCCCGGCACTC
TTCCCCCGTACTCAGAGGGCGGAATGAGGGAAGACACTCGTTCCCCCTGGGACTGACTTTTAGCG
TCTTCACCTTGAAACAAACTCCCATCAATATTCACAGACCCAGAAACGAGAGACCAAACAGAGAG
AAGAGAAAGCAGAATGAGCTTTAGTCAATTATTACCCAGTGTGAT
Found at i:97486 original size:27 final size:26
Alignment explanation
Indices: 97440--97491 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
97430 GAGGTCTAAA
97440 TCGATCTTCGATGATCCCGGTTCCCT
1 TCGATCTTCGATGATCCCGGTTCCCT
*
97466 TCGATCTTGGATCGATCCCGGTTCCC
1 TCGATCTTCGAT-GATCCCGGTTCCC
97492 GGATAAAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.12, C:0.35, G:0.21, T:0.33
Consensus pattern (26 bp):
TCGATCTTCGATGATCCCGGTTCCCT
Left flanking sequence: Indices 96940 -- 97439
GGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACATACCTGGCAATGGTTGGATTGGCGAG
GATCGATCCGCAGCAGAAGTTATTCTGCTCGGAGAACCCCTGCGCTCGGTCAAGGTATGTGCCTA
AGGCGAGGCAGTGGCCTTCTCTCCTAGAAGTTTCTATGCCTTCACGATCAACGTAGTAAAACGAG
CTAAGAAGGGATATCTACCGGGGGGAATCGGTGATGTGGCCGGAAATACGTTGACTTAGCGTTGT
GCTACATGACGATTATTTGAATCTCTATTCCAGTTTCCATCTGTGTTGTATGCCGGCCAAAGTTT
CAAAGAACGCCGGCTCGCAAGCCAAGGGCTGGGCGGTAAGGATCATCTTCTGCCTTTGAACTTCT
GCCGGCAGAAGTTCTTCTTACCCAGGGCAACACCCCTTTCCCGGCACCCACTACACCGGGGGAGG
GCAGGACCTCGATGTAGCCCGCAGGCGTAGAGGCAGAGGTCTAAA
Right flanking sequence: Indices 97492 -- 97991
GGATAAAGTCATTCGGGAACCTCAATAAAGGAATCAGTTCCCATCGTGGTCCCCGTGGATCATCG
ATCGATACGAGGTCGAAGTACCTAGTCGGTGCCAGTCTCTGGAAAGGACCCCGGATCAAAGAGAT
AACCAAGTCTGTTGGCCCAATACGAAGTCCTTTAGGGACCCTCCTCGATCTTGGATCGAACCCGG
TCCCTAATCAATCGTGGGAACCCCTATATTTGATCGAGTGAAGTGCCTGGATCTTCGATCGAGAA
GGAATCCTCGATATTCGCTCGATGGGAGTTTCTCAATCCGAGTTTAATTCTCGATATAGGATCGA
TGGTCTCGATCCGAGGTTCATTCTCGATATTCGCTCGATTGTCTCGATCCGAGCCTCGATGATAG
ATCGAGTGAGTTTCCTCGCTAAAGGCTCGAGTTCCTCGCTCGATCTTCGATCGATCCGAGTGTCC
TCGATATAGGCTCGAGTGCAGTAAGGAGTCCCTCGATCAGTGGCT
Found at i:97840 original size:38 final size:38
Alignment explanation
Indices: 97782--97869 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 38
97772 GATGGGAGTT
* * *
97782 TCTCAATCCGAGTTTAATTCTCGATATAGGATCGATGG
1 TCTCGATCCGAGGTTAATTCTCGATATACGATCGATGG
* * * *
97820 TCTCGATCCGAGGTTCATTCTCGATATTCGCTCGATTG
1 TCTCGATCCGAGGTTAATTCTCGATATACGATCGATGG
97858 TCTCGATCCGAG
1 TCTCGATCCGAG
97870 CCTCGATGAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (38 bp):
TCTCGATCCGAGGTTAATTCTCGATATACGATCGATGG
Left flanking sequence: Indices 97282 -- 97781
CAAGCCAAGGGCTGGGCGGTAAGGATCATCTTCTGCCTTTGAACTTCTGCCGGCAGAAGTTCTTC
TTACCCAGGGCAACACCCCTTTCCCGGCACCCACTACACCGGGGGAGGGCAGGACCTCGATGTAG
CCCGCAGGCGTAGAGGCAGAGGTCTAAATCGATCTTCGATGATCCCGGTTCCCTTCGATCTTGGA
TCGATCCCGGTTCCCGGATAAAGTCATTCGGGAACCTCAATAAAGGAATCAGTTCCCATCGTGGT
CCCCGTGGATCATCGATCGATACGAGGTCGAAGTACCTAGTCGGTGCCAGTCTCTGGAAAGGACC
CCGGATCAAAGAGATAACCAAGTCTGTTGGCCCAATACGAAGTCCTTTAGGGACCCTCCTCGATC
TTGGATCGAACCCGGTCCCTAATCAATCGTGGGAACCCCTATATTTGATCGAGTGAAGTGCCTGG
ATCTTCGATCGAGAAGGAATCCTCGATATTCGCTCGATGGGAGTT
Right flanking sequence: Indices 97870 -- 98369
CCTCGATGATAGATCGAGTGAGTTTCCTCGCTAAAGGCTCGAGTTCCTCGCTCGATCTTCGATCG
ATCCGAGTGTCCTCGATATAGGCTCGAGTGCAGTAAGGAGTCCCTCGATCAGTGGCTCGATACCG
GGCACCTCAATCATAGTTCGATCCCGTTCCCTCATCGAAGTGGGATCCTCGATCATAGGTCGATC
CGGGTTAAAAGAAGGTAGGTGCCAGTCTCATCGAACGAAACCGAGTCAAAAGAGGTTTGGTTTGA
ATCCGTGGCACTAGTCTCGAAACGAAGTCCTTCGCAGGAACCTAAAGGATCATCGCGAGATAGAT
CCCGGGCACGAACCCAGGAACCTCTAGGATCATAGAAAGGACCCCGCTCTTCGATATTCGATCGG
ATGAGGGAATCCAATATAAAGGTAGCCCAGAGAACATGTCCATATTAGTTCCTCGATATTCGATC
GAAGGAACCCGACTAAATGTGATTATTCGTGCCACGCACTCACGA
Found at i:100073 original size:5 final size:5
Alignment explanation
Indices: 100063--100094 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
100053 ACTCTTCCCC
100063 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GG
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GG
100095 AGAACCCCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 99563 -- 100062
CGGATTGCAAGTGCCGCAGCCAGTCGGTTGCACTCATTCGCAGTGGCACTACCGGGGCCCTTTAA
AAGTGGCACGAATGTGGGTCTGAGGTATGTGCCTTTACCGAGCGCAGGGGTAACTTTTCCCCACA
AACTTCAGAGGGATATAAGAGAGAGGTTCAGGGCTGGCTTCCGCATCAGTTATCCGTGCCGTGTG
CAGAAGTCACTTCGCTGCGAAAACTTCTGCTTACTTTTGGCACAAACCAACTTGCCCAAAAGTTG
TTTGGAAATCCGCACCGGGTGTTCTCTTCCCCTTCCCCTGCGCGGAGAACACCCTTCTGGTTCCA
AACAACCAACCAACCTTCTGGAAAGGAAAGGAAAGAGATCGGCAGAAGTTTGGAACTTCTGGTTT
GGAACCAGGGGAAAAGGTTGTTTGGTGTGAACTCCTGCCACCCTCTTATATTCCTCTGAAGTGGG
AAACCCCTGCGCGAAGATTCAACACGCCAACAAGAACTCTTCCCC
Right flanking sequence: Indices 100095 -- 100594
AGAACCCCTGCGCGGAGCAGAAGTACCCAACTTTTAACCCGGCCCAACAAGAACTTCGCTACGCG
AAGAACCAGGTCACACCTTCTTGCTTGGTCCAACAAGAACTTCGCTGCGCGAAGATTCGGGTCCT
GAACTTATTCCCCTGCGCGAAGCAGGAGTTTCACGCAAGCAAACAACCCTTCACCTCGGATACCC
TGCGCTCGGGACTTCTGCACTTCCCTTCACCTCGCTACGCTCGGTAAAGGTAAGCAACCCAACCC
AACCTTTTGCCTCGCTACGCTCGGTAAAGGCACATACCTGAACCTCCCTCTTATATTACTCTGAA
GGTTGGTTGTTTGTGGGGAAAAGGGCCTGCGCTCGGGACTTCTGCACTTCCAAAGTTCCTCGCTA
CGCTCGGTAAAGGTAAGCAACCAAAACTCGCAGGGGAAAAGGGCCTGCGCTCGGTAAAGGTAAGA
CCTGATTTCTTGGTCCTTTGTAAGCGAATTCGGGCTTCCGCATCA
Found at i:101630 original size:5 final size:5
Alignment explanation
Indices: 101620--101647 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
101610 GCGAGGTGGC
101620 AGGGG AGGGG AGGGG AGGGG AGGGG AGG
1 AGGGG AGGGG AGGGG AGGGG AGGGG AGG
101648 AGCACCGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.79, T:0.00
Consensus pattern (5 bp):
AGGGG
Left flanking sequence: Indices 101120 -- 101619
GTTTGCCCTCCGGCACAACTGAACCCAACTTCTGCACGAAAAGTTTCGAAGCAACTTTTGGCACG
AATGAACCGTTGTCGGGATCCAAGACCCACGACTTGGATCCGTATCCCACCTAACTTCTGCCGAA
AAGTTTCGAAGAATGAGTTTGGCCGGCAAAGTGCGTGCAAACTGTTGTTAATTCGTGCCGGGGCG
GTTATTCGTGCCTTCGCAAGCAACTTTTGCTTCCCCCGGCTCAGCAATCAATCTTTTTCGGACGG
ATTTCCTAAAAAAAGGTTATTACCTTGACCGAGCGCAGGGGTTCTCCGAGGAACTTATGCGGGAA
AAGAGCTTCGCTTGCTGCGAGATTTTGGCAGAAGTTCGCACAAACAACCAACCTTTCTTGGTCCA
AAAAAAAGGCAGGCAGGAGTTAGTTCTTGACCGAGCGCAGGTATTCCCCCAGAGGTGGCAGGAGT
TCTTTACCGAGCGCAGGGGAAGGGCCTTCTCCCCTGCGAGGTGGC
Right flanking sequence: Indices 101648 -- 102147
AGCACCGGTTCTTTGGTGAGACAGGCATAGGAAAAAATCCGCCCTCAAGGGCCCTGGCCCGGGTT
GTTTGGTTAGCACAGTCTACGAACCAAAGCCAAGTAGTGCAGGAGCTGTGTTTCTCATTCCCAAT
TCTCCTCTTGGAAGTTTGTGTCTCCCTCGCATCGATGCCCCTTTTTTCTGGGGGCTCGCTTGTTT
CTGCCGGCTGGCTCGCGCCTTTCCCTTTTGCCATTCCCTTCACCTCTTCCCCTGCGCTCGGTAAA
GGCACATACCTTAAGGGGCTTTGCTCACTAAACAAAAGGATCTAGGGAATTTCCTTTGAGCCGGG
ACTTTGCTTACCAAACAGGGGGAAAGCGAGGTTTGTTGTTTGATCCAGAGACTGTTTTAACCTAT
TCCCCCAGTGCACTCAAGGTTTTAGTTGGGGTACTTTGCAACCCGTGCACTTGAGGGATTTTGTT
CCGGTGCCTGTGCAAAACTACCGGGGACTGGGATAACCAAACAAA
Found at i:102289 original size:79 final size:79
Alignment explanation
Indices: 102153--102630 Score: 920
Period size: 79 Copynumber: 6.1 Consensus size: 79
102143 ACAAAAGCTC
102153 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
102218 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
**
102232 CCTTCACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
102297 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
**
102311 CCTTCACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
102376 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
102390 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
102455 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
102469 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
102534 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
102548 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
1 CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
102613 CGGTAAAGGTAAGA
66 CGGTAAAGGTAAGA
102627 CCTG
1 CCTG
102631 GGGTTTTTGT
Statistics
Matches: 395, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 395 1.00
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.35
Consensus pattern (79 bp):
CCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
CGGTAAAGGTAAGA
Left flanking sequence: Indices 101653 -- 102152
CGGTTCTTTGGTGAGACAGGCATAGGAAAAAATCCGCCCTCAAGGGCCCTGGCCCGGGTTGTTTG
GTTAGCACAGTCTACGAACCAAAGCCAAGTAGTGCAGGAGCTGTGTTTCTCATTCCCAATTCTCC
TCTTGGAAGTTTGTGTCTCCCTCGCATCGATGCCCCTTTTTTCTGGGGGCTCGCTTGTTTCTGCC
GGCTGGCTCGCGCCTTTCCCTTTTGCCATTCCCTTCACCTCTTCCCCTGCGCTCGGTAAAGGCAC
ATACCTTAAGGGGCTTTGCTCACTAAACAAAAGGATCTAGGGAATTTCCTTTGAGCCGGGACTTT
GCTTACCAAACAGGGGGAAAGCGAGGTTTGTTGTTTGATCCAGAGACTGTTTTAACCTATTCCCC
CAGTGCACTCAAGGTTTTAGTTGGGGTACTTTGCAACCCGTGCACTTGAGGGATTTTGTTCCGGT
GCCTGTGCAAAACTACCGGGGACTGGGATAACCAAACAAAAGCTC
Right flanking sequence: Indices 102631 -- 103130
GGGTTTTTGTTTGAGCCGGAAACTTTGCTAACTGAAAAACCAGGAATCGGTTGTTTCAACCGGAG
CACTCACCAAAAAGGGATCCGGTTTGTTGCGTGTAGGGACTGTGCTTACCAAAGAAAAGCAGCTT
GGGAAAGGAAGGGGATGGGAAAGAATTCCTTTGAGCCAGAGACATTGCTGGGGGCCAGGGATTCC
AAACCAATGGGGCGAGGGTTTCCAAAACAACGGGGCGAGGGAGACACAAAAAACCGGGGATCCTG
TAAAGTTCTTTGCGGGGACTTTGCTCTACCCCCAGGGAGCCAACAACAAACAAAACCTTCCCGTA
CTTAGGTTTGGCTTCGAGGATGACCTTACAACCAGGGTTCCCAAACAAAAGGTGCCTGGGTTTTT
GTTCCGGAGCCCTGCCTTTTAAGCGAAAAAGAAGGCTGTGCAAGGGCTTTTGTTGGAACAAGTTC
TTTTTATGACCAACCCTTAGGGTCTTTGCGTAGTCTTCCATCCTG
Found at i:102843 original size:23 final size:23
Alignment explanation
Indices: 102811--102867 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
102801 GACATTGCTG
* * *
102811 GGGGCCAGGGATTCCAAACCAAT
1 GGGGCGAGGGATTCCAAAACAAC
*
102834 GGGGCGAGGGTTTCCAAAACAAC
1 GGGGCGAGGGATTCCAAAACAAC
102857 GGGGCGAGGGA
1 GGGGCGAGGGA
102868 GACACAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.40, T:0.11
Consensus pattern (23 bp):
GGGGCGAGGGATTCCAAAACAAC
Left flanking sequence: Indices 102311 -- 102810
CCTTCACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCT
CGGTAAAGGTAAGACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGC
CCTTCCCCTGCGCTCGGTAAAGGTAAGACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTT
GGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAGGTAAGACCTGAACCTCTCTCTTATATTAC
TCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAAGGTAAGACCTGGGGTT
TTTGTTTGAGCCGGAAACTTTGCTAACTGAAAAACCAGGAATCGGTTGTTTCAACCGGAGCACTC
ACCAAAAAGGGATCCGGTTTGTTGCGTGTAGGGACTGTGCTTACCAAAGAAAAGCAGCTTGGGAA
AGGAAGGGGATGGGAAAGAATTCCTTTGAGCCAGAGACATTGCTG
Right flanking sequence: Indices 102868 -- 103367
GACACAAAAAACCGGGGATCCTGTAAAGTTCTTTGCGGGGACTTTGCTCTACCCCCAGGGAGCCA
ACAACAAACAAAACCTTCCCGTACTTAGGTTTGGCTTCGAGGATGACCTTACAACCAGGGTTCCC
AAACAAAAGGTGCCTGGGTTTTTGTTCCGGAGCCCTGCCTTTTAAGCGAAAAAGAAGGCTGTGCA
AGGGCTTTTGTTGGAACAAGTTCTTTTTATGACCAACCCTTAGGGTCTTTGCGTAGTCTTCCATC
CTGCACACTGTTGGTAGATAGGTTTAAAGTTTTGTAAGGAAGTGGGTAGGAACCCCGCACTGTTT
TGTAGGAGCATTAGATCAGAGCCTTTGCTAACCTGAAGTAGCCCCGAGGTTCCGGAGACTATAAG
GGACAAGAGTTACCTAAGTAAAGAAGCTCAGGATCCTAGCAGGGTTCTTTGCTCAACAAAGGATC
CAAGGGAACCCAAAGAAATCAACCAACAAAGAAGAAAGAAAGAAC
Found at i:104059 original size:44 final size:44
Alignment explanation
Indices: 103996--104079 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
103986 TCGAACAGAA
* *
103996 GAAAGCCGACCCTAACGAGAAAGAAGCGAGAAGGAAAGCAAGGG
1 GAAAGCCAACCCTAACGAGAAAGAAGCGACAAGGAAAGCAAGGG
*
104040 GAAAGCCAACCCTAACGAGAGAGAAGCGACAAGGAAAGCA
1 GAAAGCCAACCCTAACGAGAAAGAAGCGACAAGGAAAGCA
104080 GAAGGCAAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.46, C:0.20, G:0.31, T:0.02
Consensus pattern (44 bp):
GAAAGCCAACCCTAACGAGAAAGAAGCGACAAGGAAAGCAAGGG
Left flanking sequence: Indices 103496 -- 103995
GTCCCAACGAACTAGTAGGTTGGGAGCAATGCCAGGAACCTACGAAGTCCTGGGTTTCCTAGATA
GACTCAAACCAAAAAGGAAAGGAAACCTACCAACATCAAGGTTCAGAGAGAGAAACTAAAGAACA
AAAAAACAAAGAGGTAAAAGGAAGAAACCAACCCAAAAGTGCATAGGAGGAAGACTTTAAGAAAA
ACAAGAAACCGGCGCTTTTAAAAAGCATCTAGACAAAAGAACGAGTAAGAAGACGAATACGATAC
GCCGATAAAAGGTAAAAGACGATAAAAGAAGAAAGATAAAAGAGCTGCTAAAAGTAACGATAGAA
GAGAAAACAGCAAACATCTAAAAGAAAGCCAAAGAGAGCCCTTTAAAAGAAAAGGATCTTATAAG
AAGGAAACAGGTGAGTCCCGAAGTCCCCTGTTTGTGTGCTTGGTATGGGGCCCCTCCCGAAAGAA
CCCAAAAGTGTCCAATCCCAAAAAAAGGAACCAGTTCGAACAGAA
Right flanking sequence: Indices 104080 -- 104579
GAAGGCAAGCAAGAATTCTTCTATAACCATCGGCATATTGTCTTCGTCTGCTAAAGCAATATAGT
TTATCGTCTGCTAAAGCAATAGAGTAATCGTCTGCAAAAGCAATAAGGTAAGGGGTTGTCTCTCA
GTGCAGTGTCTGGGGTAAGGGGTTTGTCTCTAAGTCCAGTGTCTCAGTTTGTCTGGTTCTGTCTC
CCCTCAGGGTCTCAGTCTCTCCGCACAGTGAGTGTCTGGTCCAAACAGGCCAGTGAGTTTCTCCC
CGCAAAGTCAGTATCTTGTCCGAAGGTTCTCCCCGCACTGTCTTTGTGTAGTCGAATAAACCAAG
TGCAAGGCCAAGGAGTTCTTTTGTCCCCCCAAGAACAACCGAAGGCACAAGAGGGGTTCCCAGAA
GAGTAAAAGGGCCAGTGTAGCGGTTCCTCCGCGAAAGCAAAGTCCCTGTACCCTCTGCACAGTGT
AGTCTTGTACCAGTACCATCTGTACAAGTAAGTGTCCCAGGTCCC
Found at i:104151 original size:25 final size:24
Alignment explanation
Indices: 104123--104189 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 24
104113 CATATTGTCT
* *
104123 TCGTCTGCTAAAGCAATATAGTTTA
1 TCGTCTGCTAAAGCAATAGAG-TAA
104148 TCGTCTGCTAAAGCAATAGAGTAA
1 TCGTCTGCTAAAGCAATAGAGTAA
*
104172 TCGTCTGCAAAAGCAATA
1 TCGTCTGCTAAAGCAATA
104190 AGGTAAGGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 19 0.49
25 20 0.51
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (24 bp):
TCGTCTGCTAAAGCAATAGAGTAA
Left flanking sequence: Indices 103623 -- 104122
ACAAAAAAACAAAGAGGTAAAAGGAAGAAACCAACCCAAAAGTGCATAGGAGGAAGACTTTAAGA
AAAACAAGAAACCGGCGCTTTTAAAAAGCATCTAGACAAAAGAACGAGTAAGAAGACGAATACGA
TACGCCGATAAAAGGTAAAAGACGATAAAAGAAGAAAGATAAAAGAGCTGCTAAAAGTAACGATA
GAAGAGAAAACAGCAAACATCTAAAAGAAAGCCAAAGAGAGCCCTTTAAAAGAAAAGGATCTTAT
AAGAAGGAAACAGGTGAGTCCCGAAGTCCCCTGTTTGTGTGCTTGGTATGGGGCCCCTCCCGAAA
GAACCCAAAAGTGTCCAATCCCAAAAAAAGGAACCAGTTCGAACAGAAGAAAGCCGACCCTAACG
AGAAAGAAGCGAGAAGGAAAGCAAGGGGAAAGCCAACCCTAACGAGAGAGAAGCGACAAGGAAAG
CAGAAGGCAAGCAAGAATTCTTCTATAACCATCGGCATATTGTCT
Right flanking sequence: Indices 104190 -- 104689
AGGTAAGGGGTTGTCTCTCAGTGCAGTGTCTGGGGTAAGGGGTTTGTCTCTAAGTCCAGTGTCTC
AGTTTGTCTGGTTCTGTCTCCCCTCAGGGTCTCAGTCTCTCCGCACAGTGAGTGTCTGGTCCAAA
CAGGCCAGTGAGTTTCTCCCCGCAAAGTCAGTATCTTGTCCGAAGGTTCTCCCCGCACTGTCTTT
GTGTAGTCGAATAAACCAAGTGCAAGGCCAAGGAGTTCTTTTGTCCCCCCAAGAACAACCGAAGG
CACAAGAGGGGTTCCCAGAAGAGTAAAAGGGCCAGTGTAGCGGTTCCTCCGCGAAAGCAAAGTCC
CTGTACCCTCTGCACAGTGTAGTCTTGTACCAGTACCATCTGTACAAGTAAGTGTCCCAGGTCCC
ATAACAAAAGTCTGAGTCCCAGGCCCCAGCCCAGTGTGTCCTCCCGGGCCCCTCCGCACTTGTCT
TGTCGAAAGAAACAAGTCTGGGTGAGCGAGTCAAAGGCCAAGTAG
Found at i:104195 original size:24 final size:24
Alignment explanation
Indices: 104123--104195 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
104113 CATATTGTCT
* *
104123 TCGTCTGCTAAAGCAATATAGTTTA
1 TCGTCTGCTAAAGCAATA-AGGTAA
104148 TCGTCTGCTAAAGCAAT-AGAGTAA
1 TCGTCTGCTAAAGCAATAAG-GTAA
*
104172 TCGTCTGCAAAAGCAATAAGGTAA
1 TCGTCTGCTAAAGCAATAAGGTAA
104196 GGGGTTGTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.05
24 22 0.51
25 19 0.44
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.27
Consensus pattern (24 bp):
TCGTCTGCTAAAGCAATAAGGTAA
Left flanking sequence: Indices 103623 -- 104122
ACAAAAAAACAAAGAGGTAAAAGGAAGAAACCAACCCAAAAGTGCATAGGAGGAAGACTTTAAGA
AAAACAAGAAACCGGCGCTTTTAAAAAGCATCTAGACAAAAGAACGAGTAAGAAGACGAATACGA
TACGCCGATAAAAGGTAAAAGACGATAAAAGAAGAAAGATAAAAGAGCTGCTAAAAGTAACGATA
GAAGAGAAAACAGCAAACATCTAAAAGAAAGCCAAAGAGAGCCCTTTAAAAGAAAAGGATCTTAT
AAGAAGGAAACAGGTGAGTCCCGAAGTCCCCTGTTTGTGTGCTTGGTATGGGGCCCCTCCCGAAA
GAACCCAAAAGTGTCCAATCCCAAAAAAAGGAACCAGTTCGAACAGAAGAAAGCCGACCCTAACG
AGAAAGAAGCGAGAAGGAAAGCAAGGGGAAAGCCAACCCTAACGAGAGAGAAGCGACAAGGAAAG
CAGAAGGCAAGCAAGAATTCTTCTATAACCATCGGCATATTGTCT
Right flanking sequence: Indices 104196 -- 104695
GGGGTTGTCTCTCAGTGCAGTGTCTGGGGTAAGGGGTTTGTCTCTAAGTCCAGTGTCTCAGTTTG
TCTGGTTCTGTCTCCCCTCAGGGTCTCAGTCTCTCCGCACAGTGAGTGTCTGGTCCAAACAGGCC
AGTGAGTTTCTCCCCGCAAAGTCAGTATCTTGTCCGAAGGTTCTCCCCGCACTGTCTTTGTGTAG
TCGAATAAACCAAGTGCAAGGCCAAGGAGTTCTTTTGTCCCCCCAAGAACAACCGAAGGCACAAG
AGGGGTTCCCAGAAGAGTAAAAGGGCCAGTGTAGCGGTTCCTCCGCGAAAGCAAAGTCCCTGTAC
CCTCTGCACAGTGTAGTCTTGTACCAGTACCATCTGTACAAGTAAGTGTCCCAGGTCCCATAACA
AAAGTCTGAGTCCCAGGCCCCAGCCCAGTGTGTCCTCCCGGGCCCCTCCGCACTTGTCTTGTCGA
AAGAAACAAGTCTGGGTGAGCGAGTCAAAGGCCAAGTAGTTCTGT
Found at i:104227 original size:32 final size:33
Alignment explanation
Indices: 104191--104253 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
104181 AAAGCAATAA
* *
104191 GGTAAGGGG-TTGTCTCTCAGTGCAGTGTCTGG
1 GGTAAGGGGTTTGTCTCTAAGTCCAGTGTCTGG
104223 GGTAAGGGGTTTGTCTCTAAGTCCAGTGTCT
1 GGTAAGGGGTTTGTCTCTAAGTCCAGTGTCT
104254 CAGTTTGTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 9 0.32
33 19 0.68
ACGTcount: A:0.14, C:0.16, G:0.37, T:0.33
Consensus pattern (33 bp):
GGTAAGGGGTTTGTCTCTAAGTCCAGTGTCTGG
Left flanking sequence: Indices 103691 -- 104190
ACAAGAAACCGGCGCTTTTAAAAAGCATCTAGACAAAAGAACGAGTAAGAAGACGAATACGATAC
GCCGATAAAAGGTAAAAGACGATAAAAGAAGAAAGATAAAAGAGCTGCTAAAAGTAACGATAGAA
GAGAAAACAGCAAACATCTAAAAGAAAGCCAAAGAGAGCCCTTTAAAAGAAAAGGATCTTATAAG
AAGGAAACAGGTGAGTCCCGAAGTCCCCTGTTTGTGTGCTTGGTATGGGGCCCCTCCCGAAAGAA
CCCAAAAGTGTCCAATCCCAAAAAAAGGAACCAGTTCGAACAGAAGAAAGCCGACCCTAACGAGA
AAGAAGCGAGAAGGAAAGCAAGGGGAAAGCCAACCCTAACGAGAGAGAAGCGACAAGGAAAGCAG
AAGGCAAGCAAGAATTCTTCTATAACCATCGGCATATTGTCTTCGTCTGCTAAAGCAATATAGTT
TATCGTCTGCTAAAGCAATAGAGTAATCGTCTGCAAAAGCAATAA
Right flanking sequence: Indices 104254 -- 104753
CAGTTTGTCTGGTTCTGTCTCCCCTCAGGGTCTCAGTCTCTCCGCACAGTGAGTGTCTGGTCCAA
ACAGGCCAGTGAGTTTCTCCCCGCAAAGTCAGTATCTTGTCCGAAGGTTCTCCCCGCACTGTCTT
TGTGTAGTCGAATAAACCAAGTGCAAGGCCAAGGAGTTCTTTTGTCCCCCCAAGAACAACCGAAG
GCACAAGAGGGGTTCCCAGAAGAGTAAAAGGGCCAGTGTAGCGGTTCCTCCGCGAAAGCAAAGTC
CCTGTACCCTCTGCACAGTGTAGTCTTGTACCAGTACCATCTGTACAAGTAAGTGTCCCAGGTCC
CATAACAAAAGTCTGAGTCCCAGGCCCCAGCCCAGTGTGTCCTCCCGGGCCCCTCCGCACTTGTC
TTGTCGAAAGAAACAAGTCTGGGTGAGCGAGTCAAAGGCCAAGTAGTTCTGTTGTTCCCTCAAGA
CCCCCCGTAGGGTCAAGAGTGGGCCCCCTCCCCAAAGAGTAACAG
Found at i:104863 original size:27 final size:28
Alignment explanation
Indices: 104816--104880 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 28
104806 TAGTGGTGTA
* *
104816 GTCCCA-GTCCCCTCTGTACAAGT-CAGT
1 GTCCCAGGTTCCCTCTGCACAA-TCCAGT
*
104843 GTCCCAGGTTCCC-CTGCACAATCCGGT
1 GTCCCAGGTTCCCTCTGCACAATCCAGT
104870 GTCCC-GGTTCC
1 GTCCCAGGTTCC
104881 TGGCACTGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
26 7 0.21
27 21 0.64
28 5 0.15
ACGTcount: A:0.14, C:0.40, G:0.22, T:0.25
Consensus pattern (28 bp):
GTCCCAGGTTCCCTCTGCACAATCCAGT
Left flanking sequence: Indices 104316 -- 104815
CAAACAGGCCAGTGAGTTTCTCCCCGCAAAGTCAGTATCTTGTCCGAAGGTTCTCCCCGCACTGT
CTTTGTGTAGTCGAATAAACCAAGTGCAAGGCCAAGGAGTTCTTTTGTCCCCCCAAGAACAACCG
AAGGCACAAGAGGGGTTCCCAGAAGAGTAAAAGGGCCAGTGTAGCGGTTCCTCCGCGAAAGCAAA
GTCCCTGTACCCTCTGCACAGTGTAGTCTTGTACCAGTACCATCTGTACAAGTAAGTGTCCCAGG
TCCCATAACAAAAGTCTGAGTCCCAGGCCCCAGCCCAGTGTGTCCTCCCGGGCCCCTCCGCACTT
GTCTTGTCGAAAGAAACAAGTCTGGGTGAGCGAGTCAAAGGCCAAGTAGTTCTGTTGTTCCCTCA
AGACCCCCCGTAGGGTCAAGAGTGGGCCCCCTCCCCAAAGAGTAACAGGGCCAGTGTGCCGGTAC
CTCTGCACAAGTGAAGTCCAAGTTCCCCCTGCACGTAGTGGTGTA
Right flanking sequence: Indices 104881 -- 105380
TGGCACTGTGTAGTCTCCCAGGCCCCTCCGCACTTGTATTGTAGAAAGAACCTAGTCTGGGTAGT
CCCAGTCCAAGGAGTTCAAAGGTGTACCGAAGAAACCGAAGTGGGTCAAGGGGAACCCGAAGAGA
AGAGTTCAAAAAGGAGCCCCGCACTGTTTTTATCGTCTGGTGGAATAAGTCCCCTAGACGGTCCC
CCCAATAAAAGCCAAAGGGGGAAGAAGGGGTCCCCGAAAAAAGGGCGTGGAGCAGCCCTTCCCCC
CTGCCTGGCCGAGTAAGGAACAAAGCCCCCTCAGCACAGTGGTCCCAGGCCCCTCTGCACTAGTC
TAAAGGAACAAAGCCCCCTCAGCACAGTGGTCCCAGGCCCCTCTGCACTAGTCTAAAGGAACAAA
GCCCCCTCAGCACAGTGCCTGGTCCCAGGCCCCTCCGCACTTGTCTAGTAGAAAAAGACAAGAGC
AAGGCGGAGTAGTTCTGTGTTCCCCCCAAGAAACCCCATAGGGTG
Found at i:105218 original size:53 final size:53
Alignment explanation
Indices: 105155--105317 Score: 272
Period size: 53 Copynumber: 3.0 Consensus size: 53
105145 CTGGCCGAGT
105155 AAGGAACAAAGCCCCCTCAGCACAGTGGTCCCAGGCCCCTCTGCACTAGTCTA
1 AAGGAACAAAGCCCCCTCAGCACAGTGGTCCCAGGCCCCTCTGCACTAGTCTA
105208 AAGGAACAAAGCCCCCTCAGCACAGTGGTCCCAGGCCCCTCTGCACTAGTCTA
1 AAGGAACAAAGCCCCCTCAGCACAGTGGTCCCAGGCCCCTCTGCACTAGTCTA
* *
105261 AAGGAACAAAGCCCCCTCAGCACAGTGCCTGGTCCCAGGCCCCTCCGCACTTGTCTA
1 AAGGAACAAAGCCCCCTCAGCACA--G--TGGTCCCAGGCCCCTCTGCACTAGTCTA
105318 GTAGAAAAAG
Statistics
Matches: 104, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
53 77 0.74
55 1 0.01
57 26 0.25
ACGTcount: A:0.25, C:0.39, G:0.21, T:0.15
Consensus pattern (53 bp):
AAGGAACAAAGCCCCCTCAGCACAGTGGTCCCAGGCCCCTCTGCACTAGTCTA
Left flanking sequence: Indices 104655 -- 105154
AACAAGTCTGGGTGAGCGAGTCAAAGGCCAAGTAGTTCTGTTGTTCCCTCAAGACCCCCCGTAGG
GTCAAGAGTGGGCCCCCTCCCCAAAGAGTAACAGGGCCAGTGTGCCGGTACCTCTGCACAAGTGA
AGTCCAAGTTCCCCCTGCACGTAGTGGTGTAGTCCCAGTCCCCTCTGTACAAGTCAGTGTCCCAG
GTTCCCCTGCACAATCCGGTGTCCCGGTTCCTGGCACTGTGTAGTCTCCCAGGCCCCTCCGCACT
TGTATTGTAGAAAGAACCTAGTCTGGGTAGTCCCAGTCCAAGGAGTTCAAAGGTGTACCGAAGAA
ACCGAAGTGGGTCAAGGGGAACCCGAAGAGAAGAGTTCAAAAAGGAGCCCCGCACTGTTTTTATC
GTCTGGTGGAATAAGTCCCCTAGACGGTCCCCCCAATAAAAGCCAAAGGGGGAAGAAGGGGTCCC
CGAAAAAAGGGCGTGGAGCAGCCCTTCCCCCCTGCCTGGCCGAGT
Right flanking sequence: Indices 105318 -- 105817
GTAGAAAAAGACAAGAGCAAGGCGGAGTAGTTCTGTGTTCCCCCCAAGAAACCCCATAGGGTGAA
GAGTGGGTTCCCAAAAGAGAAGTGAGCAAGCGGGAGTATCAAGCCCCCCCCAAAAGGAGTACCAG
ACCAAAGAGTTCTTTGTTCCTCCGAAGGAACCCCTACGGGTGAAGAAAGGGGCCCCAAAAGACAG
GGCAAGTGTTGCGGTCCCTCTGCACAGGTTCCTCGGCCATAGAGTTCTAAAGTTCCCCCAATAAA
CACCTACGGGTGAAGAAAGGGCCCCAAAAAGAGTAAAAGGGCCAGTGTTGCAGTTCCTCCGCACT
GTCGGGTTATAGTCCAATAAAGCGAGTCGAGGTCAATGAAATCCCCGGCCAAAGAGTTCTTAGGG
TCCCCTAACAAAAACCAAAGGGTCAAAGAGGGGAGGGGCCCAAAAGAGTAGTGAGCCGAGTGGGT
GTTGCGAGTCCCCCCGCAAAGGTTCCTCGGCCATAGAGTTGTTGG
Found at i:105224 original size:30 final size:30
Alignment explanation
Indices: 105190--105283 Score: 85
Period size: 30 Copynumber: 3.4 Consensus size: 30
105180 TGGTCCCAGG
*
105190 CCCCTCTGCACTAGTCTAAAGGAACAAAGC
1 CCCCTCAGCACTAGTCTAAAGGAACAAAGC
* ** *
105220 CCCCTCAGCAC-AG--T---GG-TCCCAGG
1 CCCCTCAGCACTAGTCTAAAGGAACAAAGC
*
105243 CCCCTCTGCACTAGTCTAAAGGAACAAAGC
1 CCCCTCAGCACTAGTCTAAAGGAACAAAGC
105273 CCCCTCAGCAC
1 CCCCTCAGCAC
105284 AGTGCCTGGT
Statistics
Matches: 46, Mismatches: 11, Indels: 14
0.65 0.15 0.20
Matches are distributed among these distances:
23 13 0.28
24 4 0.09
26 1 0.02
27 1 0.02
29 4 0.09
30 23 0.50
ACGTcount: A:0.28, C:0.39, G:0.18, T:0.15
Consensus pattern (30 bp):
CCCCTCAGCACTAGTCTAAAGGAACAAAGC
Left flanking sequence: Indices 104690 -- 105189
TTCTGTTGTTCCCTCAAGACCCCCCGTAGGGTCAAGAGTGGGCCCCCTCCCCAAAGAGTAACAGG
GCCAGTGTGCCGGTACCTCTGCACAAGTGAAGTCCAAGTTCCCCCTGCACGTAGTGGTGTAGTCC
CAGTCCCCTCTGTACAAGTCAGTGTCCCAGGTTCCCCTGCACAATCCGGTGTCCCGGTTCCTGGC
ACTGTGTAGTCTCCCAGGCCCCTCCGCACTTGTATTGTAGAAAGAACCTAGTCTGGGTAGTCCCA
GTCCAAGGAGTTCAAAGGTGTACCGAAGAAACCGAAGTGGGTCAAGGGGAACCCGAAGAGAAGAG
TTCAAAAAGGAGCCCCGCACTGTTTTTATCGTCTGGTGGAATAAGTCCCCTAGACGGTCCCCCCA
ATAAAAGCCAAAGGGGGAAGAAGGGGTCCCCGAAAAAAGGGCGTGGAGCAGCCCTTCCCCCCTGC
CTGGCCGAGTAAGGAACAAAGCCCCCTCAGCACAGTGGTCCCAGG
Right flanking sequence: Indices 105284 -- 105783
AGTGCCTGGTCCCAGGCCCCTCCGCACTTGTCTAGTAGAAAAAGACAAGAGCAAGGCGGAGTAGT
TCTGTGTTCCCCCCAAGAAACCCCATAGGGTGAAGAGTGGGTTCCCAAAAGAGAAGTGAGCAAGC
GGGAGTATCAAGCCCCCCCCAAAAGGAGTACCAGACCAAAGAGTTCTTTGTTCCTCCGAAGGAAC
CCCTACGGGTGAAGAAAGGGGCCCCAAAAGACAGGGCAAGTGTTGCGGTCCCTCTGCACAGGTTC
CTCGGCCATAGAGTTCTAAAGTTCCCCCAATAAACACCTACGGGTGAAGAAAGGGCCCCAAAAAG
AGTAAAAGGGCCAGTGTTGCAGTTCCTCCGCACTGTCGGGTTATAGTCCAATAAAGCGAGTCGAG
GTCAATGAAATCCCCGGCCAAAGAGTTCTTAGGGTCCCCTAACAAAAACCAAAGGGTCAAAGAGG
GGAGGGGCCCAAAAGAGTAGTGAGCCGAGTGGGTGTTGCGAGTCC
Found at i:110141 original size:15 final size:15
Alignment explanation
Indices: 110121--110153 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
110111 GGTAAGTTCC
110121 CCCGCACGTGTCCCT
1 CCCGCACGTGTCCCT
*
110136 CCCGCACGTGTTCCT
1 CCCGCACGTGTCCCT
110151 CCC
1 CCC
110154 CCAAGAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.55, G:0.18, T:0.21
Consensus pattern (15 bp):
CCCGCACGTGTCCCT
Left flanking sequence: Indices 109621 -- 110120
GAAGGGGTTCCCCCCTTCCCCGAAAGATCCAAGAAAAGGGTAAACCTAAGGAGGAAGGGAGCCTA
TGAGGAACGAAATAGGCGAGTAAGAGCCACGTATATAGTCTTCGTCTTCGTCAGCTCAGTGTCTC
CATCTTGGTCTGTGTCTTCGTCTTGTACTTGTCCAATAAGGATAGCCTAGGTCAGTTAAGTACCA
GTCCTATGTATTCTGAGGGTCCCCCAATAAACACCATAGGGTCGCGGGCCCAAAAGAGTAACAGG
CCGGTGGTGCAGTCCCCCCGCACTTCCTCCGCAAAAGAGTACCTGTTTTGTTCTTCTGTGGGTCC
CCCAAGAAAACCCACAAGTGTCTCGATAGGGTCCCCGAAGAAGGAGTAAAAGGCCACTGTTCTAG
TTTGGGTCCCCGAGTAACTGGCCTTAGTACTCTTTTGGGTCCCCCAAGAACCTCCTTTGGGTGTG
TGTTGGGGCCCCCAAAGAAACCAGGCCCAAGGAGTGGTAAGTTCC
Right flanking sequence: Indices 110154 -- 110653
CCAAGAAAGAGAACAAGTGTATGGTCGGGGCCCCAAGGAGTAAAAGTAAATGTACTCTGTAGGGT
CCCCCAAGAAAGAGAAGAAGAACAGGAACCAGTTCATAGGGGCCCCCAAGTACAATTCCTGAGGG
TCTGTATAGGAGAAACGAGTCCCCGTGCGTGTTCCCGGAGGGTCCCCGCACGTGTCCCCTCCCCC
AAAAGAGATTACCCGGTACTCTCAGCGAGTGGATCTTCTAGAAGGAGTTCCTCATCTAAAGAAGG
CTTAAGAATAAAGGGATTAGCTCTTTCAAGCAGTAGGCACAAGTTCTTAGGTGTACCAGGAACAA
AGCGCTGATTGAAAAGCTCCCGAACCCGAATCTCGCGGGAACCATATCTGTAAAAGAGGCACCTA
TGAGCCTTAGTCTTAGTAACAGAGGCGGTCCCGAACCTAGTGTACAGGAGAGCGTGTAGGGCGAG
GCAACCCTTTCCCCCTTGTAAAGAATGGCAACTTTTTGAAAGCAA
Found at i:111789 original size:22 final size:22
Alignment explanation
Indices: 111763--111810 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
111753 TTACTTTGCC
111763 TTTTTGCCCTCTTTCTTACAGT
1 TTTTTGCCCTCTTTCTTACAGT
111785 TTTTTGCCCTCTTTCTTACAGT
1 TTTTTGCCCTCTTTCTTACAGT
111807 TTTT
1 TTTT
111811 CAGCTGCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.08, C:0.25, G:0.08, T:0.58
Consensus pattern (22 bp):
TTTTTGCCCTCTTTCTTACAGT
Left flanking sequence: Indices 111263 -- 111762
TCCACTTACTGCCCTTCTCCTTACTTTCTTTTGGCACTTTGTTTGCTCACTACACTACACTTTTT
TTGAGGGAGACACAAAACACACTCTCCTGAACCTCGGAGAACCCCTGCGCTCGGGACTTCTGCAC
ATACCTGAACCTCTCTCTTATATTCCTCTGAAGTGAGAACCCCTGCGCTCGGAACTTCTGCACAT
ACCTTTTGGGTTTGTGCTCAACTACTCTTTGGTGCCAGGATCCTTTGAAGTTCCTTTTCTTGGAC
TTTCCTTTTTTGACTGTGCTCACCATACAACCGGTTCCTTGAAACGGGAAACTATGGGGCCTGGG
AAAACGGGTACACTTACTTCCCCTAAAACACTCCTCTTTAGTTCGCTTGCCACTTACGAACCCTT
TTCGCTTCTTTTGGATTCCCTTCGCTTTGTCTATTTGCCCGGTTCTGGTTTTTTGGCTGATTGCA
GACAATCACTTTTTCTTGTGTTGGATTGGATTTTATTACTTTGCC
Right flanking sequence: Indices 111811 -- 112310
CAGCTGCTTGCAGACTATCTCTTTTTCTTGGTGTTGGATCGGATATTACACTGTCTTTTTGCCCT
TTATTTTTCGGTACTTTGGCTGCTTTTTCTTATACCCAGTTCTTTCTTTAGCCTTTTCTTCCCTC
TTACTACTATTGGCCTTTTTTGCTGAAACTCACCTTAATTAAAAGTGCGCCGGCTTTTTGTTCTT
TTACCCAGTGTTTTCCGCCAGTTCGGGGGCCCGCCCCATTCCTTTTAAAAAGGAGGGGGCCGGGC
TCCTTGCCTTTGGGGCCCCTTTCCTTCCTTTGGTTGGGGATTGCCGCTTGGTTTGTTGCCAAGCC
CCTTAAAGTTAGTTCTTGGGGGCCCCTTTCCTTTAAAGTACTTGGGGGCCCTTGGGGGCAATGCT
TTGGGGGACCCGGGAACGGTTGGGTTCCTGCCCCAACTTTACCTGGGGTTTGTGGGGCTGGGACG
AGAGCTCCCTTCCTTACAACCGGTTCCTGTGCTTTACTGGATCGA
Found at i:112426 original size:5 final size:5
Alignment explanation
Indices: 112416--112444 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
112406 CGCAGGGGTT
112416 CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
112445 GAGGTGGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 111916 -- 112415
TCTTTCTTTAGCCTTTTCTTCCCTCTTACTACTATTGGCCTTTTTTGCTGAAACTCACCTTAATT
AAAAGTGCGCCGGCTTTTTGTTCTTTTACCCAGTGTTTTCCGCCAGTTCGGGGGCCCGCCCCATT
CCTTTTAAAAAGGAGGGGGCCGGGCTCCTTGCCTTTGGGGCCCCTTTCCTTCCTTTGGTTGGGGA
TTGCCGCTTGGTTTGTTGCCAAGCCCCTTAAAGTTAGTTCTTGGGGGCCCCTTTCCTTTAAAGTA
CTTGGGGGCCCTTGGGGGCAATGCTTTGGGGGACCCGGGAACGGTTGGGTTCCTGCCCCAACTTT
ACCTGGGGTTTGTGGGGCTGGGACGAGAGCTCCCTTCCTTACAACCGGTTCCTGTGCTTTACTGG
ATCGAGTGCAGCTTTTTTTGTGCTTTTTTTGTTTAGTTCTTTTTTTGCAGACGAAGCCAACAGTT
TTGCGCCAGGTATGTGCAGAAGTTTGTTTTCCGAGCGCAGGGGTT
Right flanking sequence: Indices 112445 -- 112944
GAGGTGGCAGGTATGTGCAGAAGTTTGTTTTCCGAGCGCAGCGAGAACTCCTGCGGAGAAAGAGC
ACCACAAGGCCACACCCATCTCTGGCACGGCTCTGGGGAGTGAGATTGGGGGTGTCGGGGAGGGC
ATCTAATAGTATGGAGTGTGGGGCAGGTTGCACCGGGTGTTTGCGGATTCTCCCCTTAAAGTCCC
TCTTTCTGGACGAATTCCCCTGGCCGCGCCTTGAATTGCCGCTCCTCTACGCTGTTTACTTTCTT
CTCCCTGCATCTCAGATTCCAGGTTGTCCGTAACTCCCCTCTCCCCTTGGATTAGCCGGTCTGCG
CTGGATCTAATTTCCCTTGATGCTGGGAATCAGTGTCTCCCCGCCAGTTTACAAAGAAGTCCAAC
CAAGTCTTGCCCTATTCACTGAAGGCCTGTGGAGTAGGCTTGCAGGTGCTGTAACTGCCTGTGGA
AGAGTACATAGGAAAGAGCGGCCAGAGGGCCAATAAGTTCCTCGG
Found at i:116275 original size:5 final size:5
Alignment explanation
Indices: 116265--116293 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
116255 ACTCCCCCGG
116265 GGGGA GGGGA GGGGA GGGGA GGGGA GGGG
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGG
116294 CCCCCCTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.83, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 115765 -- 116264
TTAACATTTCAGATGGTATCTACGGCTCCACCTTCTTTCTGGCTACGGGTTGGTTTTCATGGGTT
TCATGTTATAGGTACACTCTTTTTAATTGTGTGCTGCGTGCGTTTGTGGAAGGGACAAAAGGTTG
GCCCACACCAAAAAGAAAGATGTTTTGAAGCAGCTGCAAAACTGGTACTGGCACATGGTGGCCAA
AAGTTGTTTGGCTTTTTCTCTTTGTTTGTATCTACTATTGGGGAGGCACCTAGAGATAGTTGCCC
TTCTCCAGGGCGGCACAGCCCCTGGGAGCAGGGGCGCAGTGTGCTGGAGAGGGGGGAGTGGCAAA
TTCTAATGTGAGACTCGCCCCGGGGGAAGAGTGCCCCTCTCTCCCACCACCCTGTCGCCCGCAGG
TATGTGCAGAAGTTCTCCGAGCGCAGGGGTTCTCCGAGGAACTTCTTGGAGGCCCAGTCCTCTGC
AACAAACCAGGGGGGATCCACCAAAGCTGTTCCCAACTCCCCCGG
Right flanking sequence: Indices 116294 -- 116793
CCCCCCTCTCTCACCACTCTGTCGCCCGCAGGAAGGTCCAGTCCTCTGCAACAAACCAGGGGGGG
ATTCACCCTGTTCCCAACTCCCCCGGGGGCATACAGGTCTCAGCACACCCCCCTGGCGAGCCTCA
GCGGCCATGGAACTCGGGGTGACACTCCCTCCCCTTTCTGGGGGTTCAGCCCTCCTCTCCCCGGC
TGGCGCAGTGTGTAAAGCTTAAAAGTGGGTTCCACGTTCTTATGGCCAGGGCGAGGCGCTGGGGG
GGTGCTGTTGGTTCCACTGGGCTTGCCCCTGTGCCAACAGTGTGCTCTGCTCTCTTCCTAGTTGT
ATCTGTGCCTCTTCTTTGGGGGGAGAGTGGAACCGGCAGGGGTTGGGGAGAGTGGAACCAGCTGG
GCCAGGGGAGAGTGGAGCCAGCTCAGGGGAGAGCGGGACCAGCTGGGCCAGGGGAGAGTGGAACC
AGCTGGGGTTGGGGAGAGTGGAACTAGCAGGGCCAGGGGAGGGTG
Found at i:116670 original size:25 final size:25
Alignment explanation
Indices: 116638--116866 Score: 193
Period size: 25 Copynumber: 9.4 Consensus size: 25
116628 TCTTCTTTGG
* * *
116638 GGGGAGAGTGGAACCGGCAGGGGTT
1 GGGGAGAGTGGAACCAGCTGGGCTT
**
116663 GGGGAGAGTGGAACCAGCTGGGCCA
1 GGGGAGAGTGGAACCAGCTGGGCTT
* *
116688 GGGGAGAGTGGAGCCAGCT---C-A
1 GGGGAGAGTGGAACCAGCTGGGCTT
* * **
116709 GGGGAGAGCGGGACCAGCTGGGCCA
1 GGGGAGAGTGGAACCAGCTGGGCTT
*
116734 GGGGAGAGTGGAACCAGCTGGGGTT
1 GGGGAGAGTGGAACCAGCTGGGCTT
* * **
116759 GGGGAGAGTGGAACTAGCAGGGCCA
1 GGGGAGAGTGGAACCAGCTGGGCTT
* *
116784 GGGGAGGGTGGAACCAGCTGGGGTT
1 GGGGAGAGTGGAACCAGCTGGGCTT
* *
116809 GGGGAGAGTTG--CCGAGC-GTGGCCT
1 GGGGAGAGTGGAACC-AGCTG-GGCTT
* *
116833 GGGGAGAGTGGAGCCAGCTGGGGTT
1 GGGGAGAGTGGAACCAGCTGGGCTT
116858 GGGGAGAGT
1 GGGGAGAGT
116867 TGCCGGGCGT
Statistics
Matches: 163, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
21 17 0.10
22 1 0.01
23 3 0.02
24 17 0.10
25 122 0.75
26 3 0.02
ACGTcount: A:0.20, C:0.16, G:0.52, T:0.12
Consensus pattern (25 bp):
GGGGAGAGTGGAACCAGCTGGGCTT
Left flanking sequence: Indices 116138 -- 116637
ACCCTGTCGCCCGCAGGTATGTGCAGAAGTTCTCCGAGCGCAGGGGTTCTCCGAGGAACTTCTTG
GAGGCCCAGTCCTCTGCAACAAACCAGGGGGGATCCACCAAAGCTGTTCCCAACTCCCCCGGGGG
GAGGGGAGGGGAGGGGAGGGGAGGGGCCCCCCTCTCTCACCACTCTGTCGCCCGCAGGAAGGTCC
AGTCCTCTGCAACAAACCAGGGGGGGATTCACCCTGTTCCCAACTCCCCCGGGGGCATACAGGTC
TCAGCACACCCCCCTGGCGAGCCTCAGCGGCCATGGAACTCGGGGTGACACTCCCTCCCCTTTCT
GGGGGTTCAGCCCTCCTCTCCCCGGCTGGCGCAGTGTGTAAAGCTTAAAAGTGGGTTCCACGTTC
TTATGGCCAGGGCGAGGCGCTGGGGGGGTGCTGTTGGTTCCACTGGGCTTGCCCCTGTGCCAACA
GTGTGCTCTGCTCTCTTCCTAGTTGTATCTGTGCCTCTTCTTTGG
Right flanking sequence: Indices 116867 -- 117366
TGCCGGGCGTGGCAGGGGGGGTGGTTAGAAAAGAAGAAGAGTATGATCTTGACGCCGCTGGAGCA
ATTTTCTATCATTACCCTTATTCCAATTCATTACGGTAATGTTTATCTGTCCTTTACTAATTCCT
CCCAAAAAAAAAGGTAGGTTCTCCTGTTAACCACAGGATGCGTTTACTTATTATTCCACATGGTA
ACGCAAACCCGTGTTATTTTTGGGGGTTTTTTAGTGCCGTCCCGCTGGCAGTCATTGGTGGAAAT
GATTTACGAGTTTGTCTGCAGCTTGGTGGATGAACACAGATTGGGGGTAAAAAATATTTCCCCTT
GATTTTTACGCTCTTTGTGAAAAACTTGCTTTTCAGTAATCTAATTGGCATGATTCCCTACAGTT
TCACCACCACCAGTCATTTAGTGTGCACCTTTGGACTGTCATTGTCCCTTTTCATTGGCATCACC
ATAGTAGGATTTCAAAGCCATGGAACCCATTTCTTTAGCTTTCTA
Found at i:116725 original size:46 final size:46
Alignment explanation
Indices: 116663--116802 Score: 163
Period size: 46 Copynumber: 3.0 Consensus size: 46
116653 GGCAGGGGTT
* *
116663 GGGGAGAGTGGAACCAGCTGGGCCAGGGGAGAGTGGAGCCAGCTCA
1 GGGGAGAGCGGAACCAGCTGGGCCAGGGGAGAGTGGAACCAGCTCA
* **
116709 GGGGAGAGCGGGACCAGCTGGGCCAGGGGAGAGTGGAACCAGCTGGGGTT
1 GGGGAGAGCGGAACCAGCTGGGCCAGGGGAGAGTGGAACCAGCT----CA
* * * *
116759 GGGGAGAGTGGAACTAGCAGGGCCAGGGGAGGGTGGAACCAGCT
1 GGGGAGAGCGGAACCAGCTGGGCCAGGGGAGAGTGGAACCAGCT
116803 GGGGTTGGGG
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 41 0.51
50 39 0.49
ACGTcount: A:0.23, C:0.18, G:0.50, T:0.09
Consensus pattern (46 bp):
GGGGAGAGCGGAACCAGCTGGGCCAGGGGAGAGTGGAACCAGCTCA
Left flanking sequence: Indices 116163 -- 116662
GAAGTTCTCCGAGCGCAGGGGTTCTCCGAGGAACTTCTTGGAGGCCCAGTCCTCTGCAACAAACC
AGGGGGGATCCACCAAAGCTGTTCCCAACTCCCCCGGGGGGAGGGGAGGGGAGGGGAGGGGAGGG
GCCCCCCTCTCTCACCACTCTGTCGCCCGCAGGAAGGTCCAGTCCTCTGCAACAAACCAGGGGGG
GATTCACCCTGTTCCCAACTCCCCCGGGGGCATACAGGTCTCAGCACACCCCCCTGGCGAGCCTC
AGCGGCCATGGAACTCGGGGTGACACTCCCTCCCCTTTCTGGGGGTTCAGCCCTCCTCTCCCCGG
CTGGCGCAGTGTGTAAAGCTTAAAAGTGGGTTCCACGTTCTTATGGCCAGGGCGAGGCGCTGGGG
GGGTGCTGTTGGTTCCACTGGGCTTGCCCCTGTGCCAACAGTGTGCTCTGCTCTCTTCCTAGTTG
TATCTGTGCCTCTTCTTTGGGGGGAGAGTGGAACCGGCAGGGGTT
Right flanking sequence: Indices 116803 -- 117302
GGGGTTGGGGAGAGTTGCCGAGCGTGGCCTGGGGAGAGTGGAGCCAGCTGGGGTTGGGGAGAGTT
GCCGGGCGTGGCAGGGGGGGTGGTTAGAAAAGAAGAAGAGTATGATCTTGACGCCGCTGGAGCAA
TTTTCTATCATTACCCTTATTCCAATTCATTACGGTAATGTTTATCTGTCCTTTACTAATTCCTC
CCAAAAAAAAAGGTAGGTTCTCCTGTTAACCACAGGATGCGTTTACTTATTATTCCACATGGTAA
CGCAAACCCGTGTTATTTTTGGGGGTTTTTTAGTGCCGTCCCGCTGGCAGTCATTGGTGGAAATG
ATTTACGAGTTTGTCTGCAGCTTGGTGGATGAACACAGATTGGGGGTAAAAAATATTTCCCCTTG
ATTTTTACGCTCTTTGTGAAAAACTTGCTTTTCAGTAATCTAATTGGCATGATTCCCTACAGTTT
CACCACCACCAGTCATTTAGTGTGCACCTTTGGACTGTCATTGTC
Found at i:116784 original size:50 final size:50
Alignment explanation
Indices: 116638--116866 Score: 274
Period size: 50 Copynumber: 4.7 Consensus size: 50
116628 TCTTCTTTGG
* *
116638 GGGGAGAGTGGAACCGGCAGGGGTTGGGGAGAGTGGAACCAGCTGGGCCA
1 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACCAGCTGGGCCA
* ** * *
116688 GGGGAGAGTGGAGCCAGCT----CAGGGGAGAGCGGGACCAGCTGGGCCA
1 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACCAGCTGGGCCA
* *
116734 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACTAGCAGGGCCA
1 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACCAGCTGGGCCA
* * *
116784 GGGGAGGGTGGAACCAGCTGGGGTTGGGGAGAGTTG--CCGAGC-GTGGCCT
1 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACC-AGCTG-GGCCA
*
116833 GGGGAGAGTGGAGCCAGCTGGGGTTGGGGAGAGT
1 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGT
116867 TGCCGGGCGT
Statistics
Matches: 153, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
46 41 0.27
48 2 0.01
49 39 0.25
50 71 0.46
ACGTcount: A:0.20, C:0.16, G:0.52, T:0.12
Consensus pattern (50 bp):
GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACCAGCTGGGCCA
Left flanking sequence: Indices 116138 -- 116637
ACCCTGTCGCCCGCAGGTATGTGCAGAAGTTCTCCGAGCGCAGGGGTTCTCCGAGGAACTTCTTG
GAGGCCCAGTCCTCTGCAACAAACCAGGGGGGATCCACCAAAGCTGTTCCCAACTCCCCCGGGGG
GAGGGGAGGGGAGGGGAGGGGAGGGGCCCCCCTCTCTCACCACTCTGTCGCCCGCAGGAAGGTCC
AGTCCTCTGCAACAAACCAGGGGGGGATTCACCCTGTTCCCAACTCCCCCGGGGGCATACAGGTC
TCAGCACACCCCCCTGGCGAGCCTCAGCGGCCATGGAACTCGGGGTGACACTCCCTCCCCTTTCT
GGGGGTTCAGCCCTCCTCTCCCCGGCTGGCGCAGTGTGTAAAGCTTAAAAGTGGGTTCCACGTTC
TTATGGCCAGGGCGAGGCGCTGGGGGGGTGCTGTTGGTTCCACTGGGCTTGCCCCTGTGCCAACA
GTGTGCTCTGCTCTCTTCCTAGTTGTATCTGTGCCTCTTCTTTGG
Right flanking sequence: Indices 116867 -- 117366
TGCCGGGCGTGGCAGGGGGGGTGGTTAGAAAAGAAGAAGAGTATGATCTTGACGCCGCTGGAGCA
ATTTTCTATCATTACCCTTATTCCAATTCATTACGGTAATGTTTATCTGTCCTTTACTAATTCCT
CCCAAAAAAAAAGGTAGGTTCTCCTGTTAACCACAGGATGCGTTTACTTATTATTCCACATGGTA
ACGCAAACCCGTGTTATTTTTGGGGGTTTTTTAGTGCCGTCCCGCTGGCAGTCATTGGTGGAAAT
GATTTACGAGTTTGTCTGCAGCTTGGTGGATGAACACAGATTGGGGGTAAAAAATATTTCCCCTT
GATTTTTACGCTCTTTGTGAAAAACTTGCTTTTCAGTAATCTAATTGGCATGATTCCCTACAGTT
TCACCACCACCAGTCATTTAGTGTGCACCTTTGGACTGTCATTGTCCCTTTTCATTGGCATCACC
ATAGTAGGATTTCAAAGCCATGGAACCCATTTCTTTAGCTTTCTA
Found at i:116802 original size:96 final size:98
Alignment explanation
Indices: 116638--116866 Score: 286
Period size: 96 Copynumber: 2.3 Consensus size: 98
116628 TCTTCTTTGG
* * * *
116638 GGGGAGAGTGGAACCGGCAGGGGTTGGGGAGAGTGGAACCAGCTGGGCCAGGGGAGAGTGGAGCC
1 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACCAGCAGGGCCAGGGGAGAGTGGAACC
*
116703 AGCTCAGG-GGAGAGCG-GGACC-AGC-TGGGCCA
66 AGCTCAGGTGGAGAGAGTGG-CCGAGCGT-GGCCA
* *
116734 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACTAGCAGGGCCAGGGGAGGGTGGAACC
1 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACCAGCAGGGCCAGGGGAGAGTGGAACC
** * * *
116799 AGCTGGGGTTGGGGAGAGTTGCCGAGCGTGGCCT
66 AGCTCAGG-TGGAGAGAGTGGCCGAGCGTGGCCA
*
116833 GGGGAGAGTGGAGCCAGCTGGGGTTGGGGAGAGT
1 GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGT
116867 TGCCGGGCGT
Statistics
Matches: 115, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
96 65 0.57
98 8 0.07
99 41 0.36
100 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.52, T:0.12
Consensus pattern (98 bp):
GGGGAGAGTGGAACCAGCTGGGGTTGGGGAGAGTGGAACCAGCAGGGCCAGGGGAGAGTGGAACC
AGCTCAGGTGGAGAGAGTGGCCGAGCGTGGCCA
Left flanking sequence: Indices 116138 -- 116637
ACCCTGTCGCCCGCAGGTATGTGCAGAAGTTCTCCGAGCGCAGGGGTTCTCCGAGGAACTTCTTG
GAGGCCCAGTCCTCTGCAACAAACCAGGGGGGATCCACCAAAGCTGTTCCCAACTCCCCCGGGGG
GAGGGGAGGGGAGGGGAGGGGAGGGGCCCCCCTCTCTCACCACTCTGTCGCCCGCAGGAAGGTCC
AGTCCTCTGCAACAAACCAGGGGGGGATTCACCCTGTTCCCAACTCCCCCGGGGGCATACAGGTC
TCAGCACACCCCCCTGGCGAGCCTCAGCGGCCATGGAACTCGGGGTGACACTCCCTCCCCTTTCT
GGGGGTTCAGCCCTCCTCTCCCCGGCTGGCGCAGTGTGTAAAGCTTAAAAGTGGGTTCCACGTTC
TTATGGCCAGGGCGAGGCGCTGGGGGGGTGCTGTTGGTTCCACTGGGCTTGCCCCTGTGCCAACA
GTGTGCTCTGCTCTCTTCCTAGTTGTATCTGTGCCTCTTCTTTGG
Right flanking sequence: Indices 116867 -- 117366
TGCCGGGCGTGGCAGGGGGGGTGGTTAGAAAAGAAGAAGAGTATGATCTTGACGCCGCTGGAGCA
ATTTTCTATCATTACCCTTATTCCAATTCATTACGGTAATGTTTATCTGTCCTTTACTAATTCCT
CCCAAAAAAAAAGGTAGGTTCTCCTGTTAACCACAGGATGCGTTTACTTATTATTCCACATGGTA
ACGCAAACCCGTGTTATTTTTGGGGGTTTTTTAGTGCCGTCCCGCTGGCAGTCATTGGTGGAAAT
GATTTACGAGTTTGTCTGCAGCTTGGTGGATGAACACAGATTGGGGGTAAAAAATATTTCCCCTT
GATTTTTACGCTCTTTGTGAAAAACTTGCTTTTCAGTAATCTAATTGGCATGATTCCCTACAGTT
TCACCACCACCAGTCATTTAGTGTGCACCTTTGGACTGTCATTGTCCCTTTTCATTGGCATCACC
ATAGTAGGATTTCAAAGCCATGGAACCCATTTCTTTAGCTTTCTA
Found at i:117938 original size:31 final size:31
Alignment explanation
Indices: 117900--118081 Score: 283
Period size: 31 Copynumber: 5.9 Consensus size: 31
117890 TCCGGGGGGG
*
117900 CTGCCATCACAGTGCACGGTGAAGGAGTGAA
1 CTGCCATCACAGTGCACAGTGAAGGAGTGAA
**
117931 CTGCCATCACAGTGCATGGTGAAGGAGTGAA
1 CTGCCATCACAGTGCACAGTGAAGGAGTGAA
**
117962 CTGCCATCACAGTGCATGGTGAAGGAGTGAA
1 CTGCCATCACAGTGCACAGTGAAGGAGTGAA
* *
117993 CTGCCATCACAGTGCGCAGTGGAGGAGTGAA
1 CTGCCATCACAGTGCACAGTGAAGGAGTGAA
*
118024 CTGCCATCACAGTGCACAGTGCAGGAGTGAA
1 CTGCCATCACAGTGCACAGTGAAGGAGTGAA
*
118055 CTGCCATCACAGTGCACAGTGCAGGAG
1 CTGCCATCACAGTGCACAGTGAAGGAG
118082 CGGGGAACAG
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 144 1.00
ACGTcount: A:0.28, C:0.23, G:0.32, T:0.17
Consensus pattern (31 bp):
CTGCCATCACAGTGCACAGTGAAGGAGTGAA
Left flanking sequence: Indices 117400 -- 117899
CTTTGCCGTGGTGTTGGAGTTGGTTTCCTACTCCTTTCGTGCCGTAAGTTTGGGGGTGCGTTTGT
TTGCCAACATGATGGCTGGGCATACCCTGGTAAAAATCTTAAGCGGTAAAAGCTTGCTTGCTGCT
TTTGCCTGGGCCATGCTTTCAGTTGGGGGAGTGCTCACGGTGGCTTCAGTCATTCCATTTGGCAA
CTATTAAATTAAGGTTGTTTGTTTGTTGTTTTTGCCCTCACTGGGTTGGAAATCGGCGTGGCTTG
CCTTCAAGCATACGTGTTTACCATATTAACGTGCATCTACTTAAATGATTCGATAAATCTACACT
AAGCATGAAAAAGAGGGGCCAAGCCAGAGAGAAAGAGGGTGATTCTTCCACCCCCCCTGGTAAGT
TCTCTCCCCCCCACATCTTTCCGGGGGAACTGCCATCACAGTGCACAGTGAAGGAGTGGGGTAAA
GCAGAATCCACCCCTGGTAAGTTCTCTGCCCCCTTTCCGGGGGGG
Right flanking sequence: Indices 118082 -- 118581
CGGGGAACAGTTTTACAGTTTTGGCAGCCCCGTTCTCTGCCCCCCACATCGGGGAACTGCCATCA
CAGTGCACAGTGAAGGAGTGGGGTAAAGAACAGGGCCCGGGTAATTCCTGCCCTCCCTCCTAAAG
TAAAACTCCCAGAGAAAAGAGAACGTAGCAGAGGCGGAAGGGGGGAGAAACGGGGTGTGGATGGA
AGAAAAAAGAGTAGTGGTGTTAGGGGGGGAGGGAATAAAAAAAAGAGTAGTGGTGTTAGGGGGGG
GAGGGGAGAGAAAAAAGAGTAGTGGTGTTAGGGGGGGGCTCCAGCCCCCCGGGGGAATGACTAGT
ACTCTATCCGCCCCGGGTTAGCGGATTAACCAACCTGCCCTCCCCCTGTCCCTTCTACGGAATAG
CCTTTTCTCTCTATCCGCCCGGGGTTAGCGGATGAATCAACTCACCCTCCCCCTGCCCTGTCCCT
GTTCCTGCCCTGTTCCTGTCCTGTTCCTGTTCCCTCTACGGAATG
Found at i:118340 original size:37 final size:37
Alignment explanation
Indices: 118279--118379 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
118269 TGGATGGAAG
*
118279 AAAAAAGAGTAGTGGTGTTA-GGGGGGGAGGGAATAA
1 AAAAAAGAGTAGTGGTGTTAGGGGGGGGAGGGAAGAA
* *
118315 AAAAAAGAGTAGTGGTGTTAGGGGGGGGAGGGGAGAG
1 AAAAAAGAGTAGTGGTGTTAGGGGGGGGAGGGAAGAA
118352 AAAAAAGAGTAGTGGTGTTAGGGGGGGG
1 AAAAAAGAGTAGTGGTGTTAGGGGGGGG
118380 CTCCAGCCCC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
36 20 0.33
37 41 0.67
ACGTcount: A:0.35, C:0.00, G:0.50, T:0.16
Consensus pattern (37 bp):
AAAAAAGAGTAGTGGTGTTAGGGGGGGGAGGGAAGAA
Left flanking sequence: Indices 117779 -- 118278
CCCTGGTAAGTTCTCTCCCCCCCACATCTTTCCGGGGGAACTGCCATCACAGTGCACAGTGAAGG
AGTGGGGTAAAGCAGAATCCACCCCTGGTAAGTTCTCTGCCCCCTTTCCGGGGGGGCTGCCATCA
CAGTGCACGGTGAAGGAGTGAACTGCCATCACAGTGCATGGTGAAGGAGTGAACTGCCATCACAG
TGCATGGTGAAGGAGTGAACTGCCATCACAGTGCGCAGTGGAGGAGTGAACTGCCATCACAGTGC
ACAGTGCAGGAGTGAACTGCCATCACAGTGCACAGTGCAGGAGCGGGGAACAGTTTTACAGTTTT
GGCAGCCCCGTTCTCTGCCCCCCACATCGGGGAACTGCCATCACAGTGCACAGTGAAGGAGTGGG
GTAAAGAACAGGGCCCGGGTAATTCCTGCCCTCCCTCCTAAAGTAAAACTCCCAGAGAAAAGAGA
ACGTAGCAGAGGCGGAAGGGGGGAGAAACGGGGTGTGGATGGAAG
Right flanking sequence: Indices 118380 -- 118879
CTCCAGCCCCCCGGGGGAATGACTAGTACTCTATCCGCCCCGGGTTAGCGGATTAACCAACCTGC
CCTCCCCCTGTCCCTTCTACGGAATAGCCTTTTCTCTCTATCCGCCCGGGGTTAGCGGATGAATC
AACTCACCCTCCCCCTGCCCTGTCCCTGTTCCTGCCCTGTTCCTGTCCTGTTCCTGTTCCCTCTA
CGGAATGGCTTTTCCTCTCTATCCGCCCCGGGTTAGCGGATTAACCAACCTGCAACCCGATTCCT
GCCCTGGAATGGCTTTTGCCAAAGAGTCCTTTCTTCTGTTAAACCTCCCTTAAACCGGGGGCGTG
GTAGTTCTGCTGGGATCATCATTTCATTTGAATCTGGGATTTCTCCCATTGCACCCTTCCCCCTG
CCCGGGGGTGGACTGGTGCACGACACAAATCTCTACCATGAATAGCAACAGTTCGTCCAAACTTC
CGTTTATCCATAATGAAACAACCAATTTAACTTTCAGTAGTAAAT
Found at i:118565 original size:17 final size:16
Alignment explanation
Indices: 118523--118569 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
118513 TCACCCTCCC
*
118523 CCTGCCCTGTCCCTGTT
1 CCTGCCCTGTTCCTG-T
118540 CCTGCCCTGTTCCTGT
1 CCTGCCCTGTTCCTGT
*
118556 CCTGTTCCTGTTCC
1 CCTG-CCCTGTTCC
118570 CTCTACGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 5 0.19
17 22 0.81
ACGTcount: A:0.00, C:0.45, G:0.17, T:0.38
Consensus pattern (16 bp):
CCTGCCCTGTTCCTGT
Left flanking sequence: Indices 118023 -- 118522
ACTGCCATCACAGTGCACAGTGCAGGAGTGAACTGCCATCACAGTGCACAGTGCAGGAGCGGGGA
ACAGTTTTACAGTTTTGGCAGCCCCGTTCTCTGCCCCCCACATCGGGGAACTGCCATCACAGTGC
ACAGTGAAGGAGTGGGGTAAAGAACAGGGCCCGGGTAATTCCTGCCCTCCCTCCTAAAGTAAAAC
TCCCAGAGAAAAGAGAACGTAGCAGAGGCGGAAGGGGGGAGAAACGGGGTGTGGATGGAAGAAAA
AAGAGTAGTGGTGTTAGGGGGGGAGGGAATAAAAAAAAGAGTAGTGGTGTTAGGGGGGGGAGGGG
AGAGAAAAAAGAGTAGTGGTGTTAGGGGGGGGCTCCAGCCCCCCGGGGGAATGACTAGTACTCTA
TCCGCCCCGGGTTAGCGGATTAACCAACCTGCCCTCCCCCTGTCCCTTCTACGGAATAGCCTTTT
CTCTCTATCCGCCCGGGGTTAGCGGATGAATCAACTCACCCTCCC
Right flanking sequence: Indices 118570 -- 119069
CTCTACGGAATGGCTTTTCCTCTCTATCCGCCCCGGGTTAGCGGATTAACCAACCTGCAACCCGA
TTCCTGCCCTGGAATGGCTTTTGCCAAAGAGTCCTTTCTTCTGTTAAACCTCCCTTAAACCGGGG
GCGTGGTAGTTCTGCTGGGATCATCATTTCATTTGAATCTGGGATTTCTCCCATTGCACCCTTCC
CCCTGCCCGGGGGTGGACTGGTGCACGACACAAATCTCTACCATGAATAGCAACAGTTCGTCCAA
ACTTCCGTTTATCCATAATGAAACAACCAATTTAACTTTCAGTAGTAAATGATCATTTGGTGCAG
AAGTTCCAACCTCTGCGGGGGAAAAGCTGTTATTTAAGTACCGGCCGCGCCGCGATGTGGCGAAT
ACTAAGTAGCAGGATCGAGGTCTAACCCAAAGCAGAAGCGGCAACTTCTTCTTCCCCCCGCACGA
TATTATGCCAGCTCCAAGAGGTGCCACGAAGTTTGTTTGTGCGTG
Found at i:118566 original size:11 final size:11
Alignment explanation
Indices: 118528--118566 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
118518 CTCCCCCTGC
118528 CCTGTCCCTGTT
1 CCTGT-CCTGTT
*
118540 CCTGCCCTGTT
1 CCTGTCCTGTT
118551 CCTGTCCTGTT
1 CCTGTCCTGTT
118562 CCTGT
1 CCTGT
118567 TCCCTCTACG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 21 0.84
12 4 0.16
ACGTcount: A:0.00, C:0.41, G:0.18, T:0.41
Consensus pattern (11 bp):
CCTGTCCTGTT
Left flanking sequence: Indices 118028 -- 118527
CATCACAGTGCACAGTGCAGGAGTGAACTGCCATCACAGTGCACAGTGCAGGAGCGGGGAACAGT
TTTACAGTTTTGGCAGCCCCGTTCTCTGCCCCCCACATCGGGGAACTGCCATCACAGTGCACAGT
GAAGGAGTGGGGTAAAGAACAGGGCCCGGGTAATTCCTGCCCTCCCTCCTAAAGTAAAACTCCCA
GAGAAAAGAGAACGTAGCAGAGGCGGAAGGGGGGAGAAACGGGGTGTGGATGGAAGAAAAAAGAG
TAGTGGTGTTAGGGGGGGAGGGAATAAAAAAAAGAGTAGTGGTGTTAGGGGGGGGAGGGGAGAGA
AAAAAGAGTAGTGGTGTTAGGGGGGGGCTCCAGCCCCCCGGGGGAATGACTAGTACTCTATCCGC
CCCGGGTTAGCGGATTAACCAACCTGCCCTCCCCCTGTCCCTTCTACGGAATAGCCTTTTCTCTC
TATCCGCCCGGGGTTAGCGGATGAATCAACTCACCCTCCCCCTGC
Right flanking sequence: Indices 118567 -- 119066
TCCCTCTACGGAATGGCTTTTCCTCTCTATCCGCCCCGGGTTAGCGGATTAACCAACCTGCAACC
CGATTCCTGCCCTGGAATGGCTTTTGCCAAAGAGTCCTTTCTTCTGTTAAACCTCCCTTAAACCG
GGGGCGTGGTAGTTCTGCTGGGATCATCATTTCATTTGAATCTGGGATTTCTCCCATTGCACCCT
TCCCCCTGCCCGGGGGTGGACTGGTGCACGACACAAATCTCTACCATGAATAGCAACAGTTCGTC
CAAACTTCCGTTTATCCATAATGAAACAACCAATTTAACTTTCAGTAGTAAATGATCATTTGGTG
CAGAAGTTCCAACCTCTGCGGGGGAAAAGCTGTTATTTAAGTACCGGCCGCGCCGCGATGTGGCG
AATACTAAGTAGCAGGATCGAGGTCTAACCCAAAGCAGAAGCGGCAACTTCTTCTTCCCCCCGCA
CGATATTATGCCAGCTCCAAGAGGTGCCACGAAGTTTGTTTGTGC
Found at i:123479 original size:24 final size:24
Alignment explanation
Indices: 123449--123509 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
123439 GGGAGAGTGT
123449 CCCGTTAGGGTGGGATCCAAGGCA
1 CCCGTTAGGGTGGGATCCAAGGCA
123473 CCCGTTAGGGTGGGATCCAAGGCA
1 CCCGTTAGGGTGGGATCCAAGGCA
123497 CCCGTTAGGGTGG
1 CCCGTTAGGGTGG
123510 AGAGGGCCCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.18, C:0.25, G:0.39, T:0.18
Consensus pattern (24 bp):
CCCGTTAGGGTGGGATCCAAGGCA
Left flanking sequence: Indices 122949 -- 123448
ACCTTTGGCACGAAACACACACCTCCCAAAAAAAAGTTCACACAAACTTCGGGTTGGTTGTTTGC
TTGCGTGTTGAATCTTCGCGCAGGGGAATAAGTTCAGGTAGGCACGGGCCTTTGGCCCGAATAAC
CCAACTTCTGCACTCATTCAGTTTTCGAAACAGCCTTTTCGGCCACGGGAAGGGCCCCAAAGGTA
GGCACGGGACTTTTGCACTCATTTGCAAAAGTAAGTTTCATCCGTGCCGTGAACTTCTGCTTCGC
TGCGCGAAGATTCAACACGCAAGCAAACAACCAACCCGAAGTTTGTGTGAACTTCTGCTCTCTCT
TATATCCCTCTTCAGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCTCGGTCAAGGCACATACCTTA
ACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTC
AAGGCACATACCTTTGTGAAGTGGCACTCATTGGTGGGAGAGTGT
Right flanking sequence: Indices 123510 -- 124009
AGAGGGCCCCCCGGAGAACTATTCCTCTGGGGAGGCGGGTCTTTGGATCCCCTTCCCCTTAACCT
CTTCCCCTGCGCTCGGTCAAGAACTCCTGCCACCTCTGGGGGAAGACCTGCGCTCGGTCAAGAAC
ACCCTTCTGCAACCCAAAAAGTTTTGGATACCCGACCGTTTACAAAAGTCCACTCGACCGTTTAC
AAAAGTCCACTCTCCCTTCCCCTTAACCTCTTCCCCTGCGCTCGGTCAAGAACTCCTGCCACCTC
CCCCTGCGCTCGGAGAACACCCTTCTGCACATACCTTTACTTGGATCCCACCCGTGCCGGGGACT
TGTATCCCACCCGTTAGGGTGGGATCCAAGGGTATGAGTGCCACATAGTGGCACTACCGCCAGGG
TCTGAGTGCAAAAGGGCTTTCAGCAACCCCGCCGTTGATCCGAAACAACCAACAACCCGCAAGCC
CAAAGAGTTACAAAGGTAGGCTTGCACGGATAGCAACTTTCTTTT
Found at i:123700 original size:22 final size:22
Alignment explanation
Indices: 123672--123716 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
123662 TTTGGATACC
123672 CGACCGTTTACAAAAGTCCACT
1 CGACCGTTTACAAAAGTCCACT
123694 CGACCGTTTACAAAAGTCCACT
1 CGACCGTTTACAAAAGTCCACT
123716 C
1 C
123717 TCCCTTCCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (22 bp):
CGACCGTTTACAAAAGTCCACT
Left flanking sequence: Indices 123172 -- 123671
AAGTAAGTTTCATCCGTGCCGTGAACTTCTGCTTCGCTGCGCGAAGATTCAACACGCAAGCAAAC
AACCAACCCGAAGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTCTTCAGGTTGGTTGTTTGT
GGGCCTTCCCCTGCGCTCGGTCAAGGCACATACCTTAACCTCTCTCTTATATTACTCTGAAGGTT
GGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTCAAGGCACATACCTTTGTGAAGTGGCACT
CATTGGTGGGAGAGTGTCCCGTTAGGGTGGGATCCAAGGCACCCGTTAGGGTGGGATCCAAGGCA
CCCGTTAGGGTGGAGAGGGCCCCCCGGAGAACTATTCCTCTGGGGAGGCGGGTCTTTGGATCCCC
TTCCCCTTAACCTCTTCCCCTGCGCTCGGTCAAGAACTCCTGCCACCTCTGGGGGAAGACCTGCG
CTCGGTCAAGAACACCCTTCTGCAACCCAAAAAGTTTTGGATACC
Right flanking sequence: Indices 123717 -- 124216
TCCCTTCCCCTTAACCTCTTCCCCTGCGCTCGGTCAAGAACTCCTGCCACCTCCCCCTGCGCTCG
GAGAACACCCTTCTGCACATACCTTTACTTGGATCCCACCCGTGCCGGGGACTTGTATCCCACCC
GTTAGGGTGGGATCCAAGGGTATGAGTGCCACATAGTGGCACTACCGCCAGGGTCTGAGTGCAAA
AGGGCTTTCAGCAACCCCGCCGTTGATCCGAAACAACCAACAACCCGCAAGCCCAAAGAGTTACA
AAGGTAGGCTTGCACGGATAGCAACTTTCTTTTAAGTCCTTTGTAAGCGAAACTTTTCGTGCAGA
AGGTTGTTGGGTTCAGTTGTGCCGGAGGCCTTGACCGAGCCAGAAGTTGGGGCTGCGAGAACTTA
CACCCTGCCACCTCTTCCCCTGCGCTCGGTCAAGTTATGTGCCTTCTGCGTATGTGCAGAAGTTC
TCCGAGCACCGGGGTTTTCCCCACAAACAACCAACCTTCAGAGGG
Found at i:126955 original size:5 final size:5
Alignment explanation
Indices: 126945--126978 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
126935 TGCTCTTCCC
126945 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
1 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
126979 AACCCCTGCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.79, T:0.00
Consensus pattern (5 bp):
GGAGG
Left flanking sequence: Indices 126445 -- 126944
ATACACCCGACCGGGAGCATAACCGGGGGGAACCACTCTCCCTTGTACTTGGATCCCACATGCCC
CCGGAGAACTATTCCTCTGGGGAGGTCTGAGGTTGCACGAAGTTCTCCGTGCCGTTCCCAGCTAA
AAGTTGTTTGAATGAGCTTTAAAAAGTTCGGGCGGGGAAGACAACTTGGATCCCGGCTTTGCCAG
GGGTTCCAGAGGTGGCAGGAGGTTGTTTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTGCGGG
GGAAGCAGAAGAACTTCCCACCTCTCCCCCTGCGCTCGGTCAAGGTATGTGCCTTCTGCAACTGT
ATGTGCAGAAGGGTGTAAGTTCTCCGAGCACCGGGTTTTGAAGAGGTGGCAGGGAGAGTGGGACA
CCTGAAAGAGCGTTAGAACGCAGAAGAACTTCTGCTTCGCTGCGCGAAGATAGCTTTTTGGAGGT
CTTCCCCTTCTTTTCTTGCAGGGGAAAATAACTTCTGCTCTTCCC
Right flanking sequence: Indices 126979 -- 127478
AACCCCTGCGCTCGGAAAACTTCTGCTTCCCCTTCTTCGCACGGGGGAAGGGAAAGCTGCGCAGA
AGTCTCTTTCAAACAACCAACCTTCTGCACACCTTGGATCCCGACTCCGCCTACCTTTGTAAGCG
AAACAACAACCCTTTTCGTGCGTGCAGAAGTTTGCCCCCCCCACTTCGTGATAAAAAGTTGTGGC
AAGAATGAGTGCAAAAGTCTCCGTGCCTACCTGCGAAACAACCTGTTCCCGCACGTGCGCAGGGG
AAAAGTTGCTATCCGTGCCTACCTTTGTAAGCGAGACTTTTCGGCCACGGTTGGGGGAAGGCCCT
TCCCCCAAAGGTAGGCACGGATAGCAACAATCTTTTTTTTACCCTGCGCACTCATTCGAAATTAC
AAAGGTAGGCACGGATAGCAACTTTTAAGGTTCACGCCCCTTCCCCCCTGCGCACTCATTCGAAT
GAAACCGAAACAGTGGTCGTGAGATCCAAGTTGCCCCACTCGCTC
Found at i:131244 original size:21 final size:22
Alignment explanation
Indices: 131219--131261 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
131209 GTTTCGCGCA
*
131219 GCAGAAGTTTCAACC-AACAAC
1 GCAGAAGTTCCAACCAAACAAC
131240 GCAGAAGTTCCAACCAAACAAC
1 GCAGAAGTTCCAACCAAACAAC
131262 CAACCTTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.44, C:0.30, G:0.14, T:0.12
Consensus pattern (22 bp):
GCAGAAGTTCCAACCAAACAAC
Left flanking sequence: Indices 130719 -- 131218
GCAGAAGGTTGAAACTTCTGCTGCGCGAAGCAGAAGAACTGCAGAAGTTCTTCTGCAACCAACAC
TCCTTCACTTCGCTGCGCGAAGAACCGGCCAGGTCCTTTTGGAGGTCCAACTTGCTTGCTTTCTT
TAAAGTGTGCAGAAGAATTGTTTGGCAGCAGAAGTCTGCTGCGCGAAGCAGAAGTTTGGAGTGGA
ATACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGAACTTCTGCAGTTCTTCTGCTGCGCGAA
GCAAAGTCCCGTCCCTTCACTTGCTGCGCGAAGAAGCAGAAGTTTCAAACAACCTTTTTTTTCAC
CTGCCTGCTTTTTGGAAGTCCAAAAAGTGTGCAGAAGGTTGTTTGAACAGAAGTTCTTCTGCTGC
GCTCAGACTTTTTTGTTCCAGAAGGTTCCAACAACCAACCAAACAACCTTCAGAAGAAACTTCTG
CTTCTGCTTAAAAGTTGGACCGGGCAGAGACTTCTGTTTCGCGCA
Right flanking sequence: Indices 131262 -- 131761
CAACCTTCAGAAGAGACTTCTGCTTCTGCAAACAACCCGCATAAGTTGGCAGTTGGGCGGTTCTC
CGCGCAGGGGAAGGGGAAGAGCAGAAGCCTTCTGCGACGGATTTCAAAAAAAGAGTGCGGGTTGT
TTGCAGAAGTTTGCGCAGCTTTCCCCCGTGCTAGCCGGGGAAGGCCAAAAAGTAAGTTCTTTTTG
GGGCCAAGCCACTTTATTTTATTTTATTTAAAGTGGCCCATAATTCTAACGGGCCACTTTAACAC
GCTTACAAAGGACCTCCAGAAGGTTGTTTGGTTGGTTGGCTGGTTCTTCGCGCAGCTACCGAAAG
TTCGCACTTGTTGGGGGTTTGTTGTTTGGTTGGTTGTTTGGAACCAGAAGGGTGTTCTCCGCGCA
GGGGAAGGGGAAGAGAACACCCGGTGCGGATTTCCAAAAGCGCTTTCTGAGCGCAGCTTTCCCTT
CCCCCGTGCGGGAACAGCAAACGGCACGGATTACTGCCACAAACT
Done.