Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KX171638
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 364070
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 3 of 3
Found at i:332713 original size:15 final size:15
Alignment explanation
Indices: 332695--332724 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
332685 ACTTGTCACT
332695 TGTTCATAGGTCAAG
1 TGTTCATAGGTCAAG
*
332710 TGTTCATATGTCAAG
1 TGTTCATAGGTCAAG
332725 GGCTGGTAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (15 bp):
TGTTCATAGGTCAAG
Left flanking sequence: Indices 332195 -- 332694
AGGACCAGCTTTTCCCGCAGGGTTCCTCGGAGGGGAGGGGAGAAACCCTGCGCTCGGAGAACTTC
TGCCTGCTGGCTTTGTAAAGTAAAGTGGGGGAGTTTGCCTGCCATTGATCGCTTGCCAGGTGGCC
TTCGGCCGCGGGGGAAGCGCTAAGCCCGCCTGCCAGCGGGGTTGTGAAGGGCTGGCATTAAACAG
TGCCGCAGGGGAATAAGTTGTTTGTTTGTTGCGGGTTGGTTGCGGGGGAAGCGGTGCGGGGGAAG
CGGTGGTTTGGGGAAGCGCTAAGGAAAGCAGGTCGGTTTGCCGCGGCCGTTCTATGAAAGTAGTT
TCTGCGGATGATGGCATTGATCCTTCGAAAGCAGCATGTCTTAGCAACACAAAACGAGGGTTTCG
CTCGTTATAGGAGTTAACCAAAAACGTCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGT
ATGAATTTTCGTTTCATCCTGTTAAGGACAAGCACACTTGTCACT
Right flanking sequence: Indices 332725 -- 333224
GGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCC
GTCGATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTAACGCGTTAGCT
GGGCCCCCGATCAAACGCTTGCAGACCAAGGACGAACACTCATCGTTTACGGCATGGACTACCAG
GGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCAGTAGAGACCCAGAGAGCTG
CCTTCGCTATTTCGGCGTTCCTTCGTATATCTCCGGATTTTATCCCTACACACGAAATTCCACTC
TCCTCTATCTCACTCAAGTGAATTGGTTTTGAAAGCATTCCGCCGGTTGAGCTGGCGCCTTTCAC
TTTCAACCTGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAATAACACTTGCCCCCC
CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTC
Found at i:335718 original size:4 final size:4
Alignment explanation
Indices: 335709--335744 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
335699 AGCGAACTTT
335709 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
335745 CCCCTTTTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 335209 -- 335708
GGTCAAGGTATGTGCCTTGGATAAGACCAGTTGCCGGCCCTCATTCAAAGTGGTGCCGCACGAAT
GTTCAGGCCCCGTGCCACTTGCCAGAAGTGGCCAGGTTTAGAAGTCCTCGGATCCCTTGGATCCC
AGAGCAGAGGAGTAGTGGCGAGGGAAGAAAGGAGGATGGAAAACCACGTTCGACTTGCATGTGTT
AAGCATATCGCTAGCGTTCATTCTGAGCCAGGATCAAACTCGGTTTTTTGGGTACCGGTGCGGTT
CCGGATGAAGACTGACTGAATCATAAATACGAGAATTGGTTTGACTCGATGCCCATACTTCCGAG
CCGAGCGAGAGCCACTGAGATATAGAAGCGATTGAATCCAGAGGTATGTTTGGAGGTTGGTTTGT
AAGCTGGTGCAGCCTCTGTGGCCTATGCACCAGAATTGCAGTGGGGAAGAAGCAGGCAGGCTTCA
ACAAATAAATTATAAAGTAAAGCAGTCCGCAACAAAGCGAACTTT
Right flanking sequence: Indices 335745 -- 336244
CCCCTTTTCCCAGCCAAGCCCAGCCCACCCCAGCCGAGGTATGTATGAAAGCCGGTCCCAAGTCG
TCTTAGCCCTATCCCAGCTGGGCAGTTTTGGTCCCGGGTTAAGGTTCACTTCTAAACCCCGTGCC
AGCCAAAAAGAACCAAAAGCGCTTGCTTTCTGAGCGCAGGGGAAGGGGGGCCGACCCCCCATCTT
TTGCTTGCCGGGGGTACCTCTCTCACTATCCTTTGTGCCGGGGTTGAAGGGCTGCGTTAGGCTGC
AACTTTAAAGATCGGTGCCCGATTCCCAGATGGCAGTTGGCTGTTGGTCATGCTTGTTGGCTTAG
CTATCGAACTCACCGTTCCCCCAGCGCCAGCCGATGGCTTGCTTGCAAGCAGAAGTTGCCAGCCA
AAGAAGTTCTGTTAAAAAGCAAGCCGCCAAAACTGACTGAGCAGCCCGCCCAAGCAGCCCATAAC
TTAACTTCGCGCGCGCGGGGTGCTTGCTTAAATGCCGTGCCGTTT
Found at i:336555 original size:5 final size:5
Alignment explanation
Indices: 336547--336580 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
336537 GGGAAGTTCC
336547 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGG
1 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGG
336581 TAACTTTTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (5 bp):
AGGGA
Left flanking sequence: Indices 336047 -- 336546
GTTGGTCATGCTTGTTGGCTTAGCTATCGAACTCACCGTTCCCCCAGCGCCAGCCGATGGCTTGC
TTGCAAGCAGAAGTTGCCAGCCAAAGAAGTTCTGTTAAAAAGCAAGCCGCCAAAACTGACTGAGC
AGCCCGCCCAAGCAGCCCATAACTTAACTTCGCGCGCGCGGGGTGCTTGCTTAAATGCCGTGCCG
TTTCCAGAAGTTGTTTGAATGAGGTTTGCAGAAGGTTGGCGAGCCAGGAGTTGGGGCTGCGGGGG
AAGCAGAAGAACTTCCCACCTCTTCCCCAGGTATGTGCCTTTACCGAGGGGTTCTCCTCACAAAC
TTCAGAGGGATATAAGAGAGAGGAACGGCCCTGCGCTCGGTCAAGGTATGTGCCTTCTGCAACTG
TATGTGCAGAAGGGTGTAAGTTCTCCTCCCCCGCGAGAACTTCCAACCTTTTCCCCTGCGTTGGC
AGAAGGTTGGAAGTTCTTGACCGAGCACCGGGGAAGGGAAGTTCC
Right flanking sequence: Indices 336581 -- 337080
TAACTTTTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGGGAGGTGGCAGGGCCTGCCTT
TTCTCCGTGCCAGCCTACAAGCCAGCCTTTTTGGGTCCTGGCACGGGGGAAAGCTGCGCTCAGAT
TCAAACAACCAACAACCTTTTGCAACCCTTCTGCACACCTTGGATCCAACAACAAACAACCCTTC
TGCCGAGCTTCTGCCGAAGTTACAAAGGTAGGCTGGCACGGATTGCCTGCCAACCGCTTCCCCCG
CCAACCCGCACAAACAACCAACCGCCACTTTTTTTTAAAGTGGCTTTCCCGCAAACCAACTGTTA
ACCTGCATACCAGGTATGTGCAGAAGGTTGTTTGTTTTCCGAGCGCAGGTATGTGCAGAAGGGTG
GCGTGTTCTCCGAGCGCAGCGAGCAGAAGTTATTTCCCCCTGCGGGAATAGGTGGCAACCCGGGG
GAAGCTGTTGGGTTAGCAGCTGGTTGTAATACCTTTACCGAGCGC
Found at i:337138 original size:5 final size:5
Alignment explanation
Indices: 337128--337157 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
337118 TGCGCAGCTT
337128 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
337158 CGTGCGGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 336628 -- 337127
GGTGGCAGGGCCTGCCTTTTCTCCGTGCCAGCCTACAAGCCAGCCTTTTTGGGTCCTGGCACGGG
GGAAAGCTGCGCTCAGATTCAAACAACCAACAACCTTTTGCAACCCTTCTGCACACCTTGGATCC
AACAACAAACAACCCTTCTGCCGAGCTTCTGCCGAAGTTACAAAGGTAGGCTGGCACGGATTGCC
TGCCAACCGCTTCCCCCGCCAACCCGCACAAACAACCAACCGCCACTTTTTTTTAAAGTGGCTTT
CCCGCAAACCAACTGTTAACCTGCATACCAGGTATGTGCAGAAGGTTGTTTGTTTTCCGAGCGCA
GGTATGTGCAGAAGGGTGGCGTGTTCTCCGAGCGCAGCGAGCAGAAGTTATTTCCCCCTGCGGGA
ATAGGTGGCAACCCGGGGGAAGCTGTTGGGTTAGCAGCTGGTTGTAATACCTTTACCGAGCGCAG
GTCTTCCCCCAGAGGTGGCAGGGTGTTTGAACTTCTGCGCAGCTT
Right flanking sequence: Indices 337158 -- 337657
CGTGCGGGGGCTTTGAAGCGGCACGGACCTTTGGCACGAATAGCAACAAACAACCAACCAAACAA
CAAACCTTCTGCGCCAAACCGCAAGCAACTTTAAAGAAACTAACTTCCAACTTGCTTGCTTTCAT
TGGCACTCACAGCAACCTTTTGCACGAATGAAAGCAAAACAGTGTGAGATCTGTCCCACAACTGC
GTGAAGGGGAAGAAGCTGGCTGCTTTTGCCCGACTGGACGGACGCACTCATTCGTAGTGGCACGG
AGAACTTCGTGCAACCTCGTGCTAAGATTCTATAAAAAGTGGCAAGCAAGCCGAGAAGCCAAGCC
AGCCTTTTGTTCCGATTAGGCACTGAGACCAAGCTACTCCGCTCCGGGGCGATTCAGCTATGGGA
GATCGATCTCATGGGTCCCGGGACAGCCTTAGGTATGTGCAGAAGTTTTCCGAGCGCAGGGGAAG
AGGTGGCAGGGGAGTGTGGATTGAAAGCCAAGGGGATCCAAGTTA
Found at i:338155 original size:4 final size:4
Alignment explanation
Indices: 338146--338239 Score: 188
Period size: 4 Copynumber: 23.5 Consensus size: 4
338136 TGACCTTTAA
338146 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
338194 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AA
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AA
338240 AAGTCTTGGT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 90 1.00
ACGTcount: A:0.51, C:0.24, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGC
Left flanking sequence: Indices 337646 -- 338145
GGATCCAAGTTAGAAGTAGCGCTTTCTCGACCCCGGAGCAGGGCAGAAGTAGCGCCGTCTCCGCG
AATTCCTTCACTTCGCTGCGCATTACCCGAGTGGAGGTCTTCCCCAAAAAAAAGGTTGCAGCCTT
TTTATAGTTCTTCTGCAAGAAGCAGATCTTTGTTTGCAGCCAGCAAAAAGTCCCCGGCCCCCCTG
CTTGCTTTTCCCGCTGCGCATTACCCTTTTTGGAGGCAAAAAGAGAGTTGGTTGGGTGGGTTGCA
GGCAGTTAGCTTGCGGTGTTGCAGGCAGGTGAACAACCCAACCCTTCTGGGCGGTTGTTTGAACA
GAAGTTCTTCTGCTGCGCTCAGAACTAACTCTTTTTTTGTTCACACCTTAAAAGTTAATAAATAA
AGAAAGAAAGCAAGCAAGCAAGCAAGAGGCACGGCACGGCTTTATATAGAGAAAGCCAAGTTAGA
AGTAGCGCTTTCAATCCACCCTCTATATACGTGATTGACCTTTAA
Right flanking sequence: Indices 338240 -- 338739
AAGTCTTGGTCAATCACGGAGCAGCCAGGCCAGCTTTATATAGAGAAAGCGCGACTTCTAACCAC
CCACCTTGGAAGTTAGTTTCAATCCGGGGGGGCCACCTGGCTGAAACAGCAACCAACTCCGTGCA
AGCCTACCTTTGTAACTTTTTGGGCCAACTCCTCGGGGAAGCGCCACGAAGAACCCTTTTGCACG
AATGAACCGGTATCCCTGAAGCACTTCTAAAAGTGCGTGCAAAAGTATCATTCGAACCTTAAAGG
TTGGTTGTTCGGCAAGCCCAAAAAGTTACAAAGGTAGGCTGGCACGGGGGAAAACAACCAACCTT
TTCGGCCACTTCGAATGAGTGCAGATAGGAGGGATCCAAGTCCAGGGTCAAACTTGGATCCCGAC
GTGGGGGAAAAGGAGGGAGAGTGGGACAACTTGGATCCCGACAACTCGGATCCCAAAGGTCTTAC
CTTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCGAGGCTTTAGA
Found at i:338674 original size:15 final size:15
Alignment explanation
Indices: 338654--338683 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
338644 GGGAGAGTGG
*
338654 GACAACTTGGATCCC
1 GACAACTCGGATCCC
338669 GACAACTCGGATCCC
1 GACAACTCGGATCCC
338684 AAAGGTCTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.37, G:0.20, T:0.17
Consensus pattern (15 bp):
GACAACTCGGATCCC
Left flanking sequence: Indices 338154 -- 338653
AAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCA
AGCAAGCAAGCAAGCAAGCAAAAGTCTTGGTCAATCACGGAGCAGCCAGGCCAGCTTTATATAGA
GAAAGCGCGACTTCTAACCACCCACCTTGGAAGTTAGTTTCAATCCGGGGGGGCCACCTGGCTGA
AACAGCAACCAACTCCGTGCAAGCCTACCTTTGTAACTTTTTGGGCCAACTCCTCGGGGAAGCGC
CACGAAGAACCCTTTTGCACGAATGAACCGGTATCCCTGAAGCACTTCTAAAAGTGCGTGCAAAA
GTATCATTCGAACCTTAAAGGTTGGTTGTTCGGCAAGCCCAAAAAGTTACAAAGGTAGGCTGGCA
CGGGGGAAAACAACCAACCTTTTCGGCCACTTCGAATGAGTGCAGATAGGAGGGATCCAAGTCCA
GGGTCAAACTTGGATCCCGACGTGGGGGAAAAGGAGGGAGAGTGG
Right flanking sequence: Indices 338684 -- 339183
AAAGGTCTTACCTTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCGAGGCTTTAGAAGGTCTTAC
CCTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCGAGGCT
TTAGAAGGTCTTACCCTTACCGAGCGCAGGGGAAGAGGTGAAGGGTTCTTCGTGCCACAGTTTTC
GTGGCCTTCCCCCGTTTGCAAAAGTGCAAAAGTTTCATTCGTGCCACTGGGGTGCCACAGTTCTC
GTGGCCAAACAAACTCATTCCCTCATTCTTCGTGGCCCCAAAGGTTGTTGCACGAATGAAAGCAG
CCAACCCACAAACTCATTCTATAAAAAGTGGCAAGCAAGCAAAAGCCAAAAGGTTGGTTGTTCTT
CGTGCCCAGGGGAAAAGGTTGTTTGAATGAGGGCCAATGAGGGAAGGAGGGAGAGTGGCTCCTTG
GATCCCGACAACTTTTAACACCGCACGGATTTAAAGCAACTGGAT
Found at i:338779 original size:5 final size:5
Alignment explanation
Indices: 338769--338807 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
338759 CGCAGGGGTT
338769 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
338808 GAGGCTTTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 338269 -- 338768
CCAGCTTTATATAGAGAAAGCGCGACTTCTAACCACCCACCTTGGAAGTTAGTTTCAATCCGGGG
GGGCCACCTGGCTGAAACAGCAACCAACTCCGTGCAAGCCTACCTTTGTAACTTTTTGGGCCAAC
TCCTCGGGGAAGCGCCACGAAGAACCCTTTTGCACGAATGAACCGGTATCCCTGAAGCACTTCTA
AAAGTGCGTGCAAAAGTATCATTCGAACCTTAAAGGTTGGTTGTTCGGCAAGCCCAAAAAGTTAC
AAAGGTAGGCTGGCACGGGGGAAAACAACCAACCTTTTCGGCCACTTCGAATGAGTGCAGATAGG
AGGGATCCAAGTCCAGGGTCAAACTTGGATCCCGACGTGGGGGAAAAGGAGGGAGAGTGGGACAA
CTTGGATCCCGACAACTCGGATCCCAAAGGTCTTACCTTTACCGAGCGCAGGGGTTCTCCCCTCC
CCTCCGAGGCTTTAGAAGGTCTTACCCTTACCGAGCGCAGGGGTT
Right flanking sequence: Indices 338808 -- 339307
GAGGCTTTAGAAGGTCTTACCCTTACCGAGCGCAGGGGAAGAGGTGAAGGGTTCTTCGTGCCACA
GTTTTCGTGGCCTTCCCCCGTTTGCAAAAGTGCAAAAGTTTCATTCGTGCCACTGGGGTGCCACA
GTTCTCGTGGCCAAACAAACTCATTCCCTCATTCTTCGTGGCCCCAAAGGTTGTTGCACGAATGA
AAGCAGCCAACCCACAAACTCATTCTATAAAAAGTGGCAAGCAAGCAAAAGCCAAAAGGTTGGTT
GTTCTTCGTGCCCAGGGGAAAAGGTTGTTTGAATGAGGGCCAATGAGGGAAGGAGGGAGAGTGGC
TCCTTGGATCCCGACAACTTTTAACACCGCACGGATTTAAAGCAACTGGATCCAAGGACGGATTT
CCAAAAGTCCTGAGCGCAGCGAAGAACTTCTTGTGCCACTTCGAATTTTAACGGGCCAATGAGAG
GTTAGGTTTTTGTTGGCCTGAAAGGTTGGTTGTTGATCCGTGCCT
Found at i:340042 original size:5 final size:5
Alignment explanation
Indices: 340032--340058 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
340022 CAGGGGAAAA
340032 GGTTG GGTTG GGTTG GGTTG GGTTG GG
1 GGTTG GGTTG GGTTG GGTTG GGTTG GG
340059 AACTTCTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37
Consensus pattern (5 bp):
GGTTG
Left flanking sequence: Indices 339532 -- 340031
CCTTCTGCACATACAGTTGCAGAAGGCACATACCTTGACCGAGCGCAGGGGAAGAGGTGGGAAGT
TCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTCAAGAACTTCCAAACAACCTTCTGCCT
CCCTCTTATATTACTCTGAAGGTTGGTTGTTTGTGGGGAAAAGGTTCCCTCATTCTTTGAAAGTG
CAACGGCCTGGCCGAAAAGTCCCGTGCCTACCTTTGTAATTTCGAAACTCTTCGTGCAGAAGGGT
TGCAAGTTTCAAGTTGGTTGCAGAGCAGAGCAGACAGTTGTTCCAAGGACCAAGAACTTCTGCGG
GTTGTTCTTCGCGCAGGGGAATAAGTTCAGGTGTGCAGAAGGGTTGCAAAAGGTTGTTGGTTGTT
TGAATCTTCGCGCAGCGAAGCAGAAGTTCACACAAACAACCCTTCTGCTTTCCAACAACCAACCA
GAAGGTCACCTGCCTGCAACACCGCTTTTTGGACGCAGGGGAAAA
Right flanking sequence: Indices 340059 -- 340558
AACTTCTGCTTCGCGCAGCGAAGAACTTCTGCTTCCAAAAAGAGAGTTAGTTCTGAGCGCACCCA
CAACTTTTTGGGGAAGACCTCCAAAAAAATGCGCAGCGAAGCAGAAGTTCACACAAACAACCCTT
CTGCTTTCAAACAACCAACCAGAAGGTCACCTGCCTGCAACACCGCTTTTTGGACTTCCAAAAAG
CAGGCAGAAGGTTGGTTGTTTGAAAGCAGAAGAACTTCTGCTTCTGAGCGCAGCAGAAGGACTTC
TGGTTTCAAACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACACCCCCCTCCTGCCACC
TCTGGAAACCCCTGCGCTCGGTCAAGAACTTCCAAACAACCTTCTGCAACCCGGACCGAAAGGGG
GCGGGCGGCTGATCTTCTGCAAGAAGTTCTTCGCGCAGCCCCCACGCTTTCTTTTTGGACCTCCC
AACTTTAAAGCTAGCTTTAAAGTAAGTTGGGAAGAGCTTCGCGCA
Found at i:340703 original size:12 final size:12
Alignment explanation
Indices: 340686--340714 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
340676 TTGCTCCCAA
340686 CTTTCGAACTTT
1 CTTTCGAACTTT
340698 CTTTCGAACTTT
1 CTTTCGAACTTT
340710 CTTTC
1 CTTTC
340715 TTTTTGGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.28, G:0.07, T:0.52
Consensus pattern (12 bp):
CTTTCGAACTTT
Left flanking sequence: Indices 340186 -- 340685
CTTCTGCTTTCAAACAACCAACCAGAAGGTCACCTGCCTGCAACACCGCTTTTTGGACTTCCAAA
AAGCAGGCAGAAGGTTGGTTGTTTGAAAGCAGAAGAACTTCTGCTTCTGAGCGCAGCAGAAGGAC
TTCTGGTTTCAAACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACACCCCCCTCCTGCC
ACCTCTGGAAACCCCTGCGCTCGGTCAAGAACTTCCAAACAACCTTCTGCAACCCGGACCGAAAG
GGGGCGGGCGGCTGATCTTCTGCAAGAAGTTCTTCGCGCAGCCCCCACGCTTTCTTTTTGGACCT
CCCAACTTTAAAGCTAGCTTTAAAGTAAGTTGGGAAGAGCTTCGCGCAGCGGGGAAGAGCAAGAA
AGATCCCTTTTTTTAGGACCAAGAAAGGGGCGGGCGGAAGTTAGTCTCTTCTGCTTCCAAAAGAA
CGCGCAGCAGAAGTTAGTTTCTTCTGCAAGAAAGCTTGCTCCCAA
Right flanking sequence: Indices 340715 -- 341214
TTTTTGGGAAGAGCTTCTCCTTCACCCGCGCAGGGGGAAGGGGTGGAAAAGAACTTCTGCTTTCA
AACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACACCCCCACTCCTGCCACCTCTGGAA
ACCCCTGCGCTCGGTCAAGAACTTCCAAACAACCTTCTGCAACCAGGGGAAAAGGTTGGACGGAT
TTCAAAAAAAGAGTGCAACTTCTGCGGTTTGGTTGGGTTGGGTTGAAAGTTGGTTTCGCAGCTAC
CGTGAAGGTGTCCCACTCTCCCTCATTCCCTCATTCAAACGGCCTTTTCCCCTGGGCACGAAGTT
AAGCTTTACGGGTTTTACCAGGCTTAGTTCTCCTACTTCAGAGGAATATAAGGGGACACTCTTAA
GTAAGACCGGGGCGGTGACTGGGAAGAGGCTGTCACCTGGACGGCCTGGGAAAAGCCAAAGTTCG
CCCTGTCACGCTAAAGATTTCGTGAAAAAGAGGGCCAGCACTTCC
Found at i:341770 original size:19 final size:19
Alignment explanation
Indices: 341731--341771 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
341721 ACATATATCG
**
341731 ATAGATATATAGCATCTAT
1 ATAGATATATAGCATAGAT
341750 ATAGATATATAGCATAGAT
1 ATAGATATATAGCATAGAT
341769 ATA
1 ATA
341772 TCCGGAGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (19 bp):
ATAGATATATAGCATAGAT
Left flanking sequence: Indices 341231 -- 341730
CTGTTATTGATACCTACGTAGACCACCAAAAAAGATCGGTCGAAGTCGGGGTTTAGGTTGCCCTT
TCGTGAATGGGACACGTGGATGGAAAGCATACGGGTTGTATCATACTTGTGATGGTACCAAGCAG
TCTTAGTGGAGCAATGACCTATGTAAGCAATCACCTGTGAATGGTACCAAGCAGTATGGTGTGAA
GTCATCCACCCGGCAATCCAATCCGAAGGTTATCTTCTCTCTGTTCTCTCCTCTCCGGGCATCAC
GGAATACTTTTTCTGATAAGAGCAGTTAAGAACTTAACTGCTGGACAAATAATAGCCATTACTTA
AAGGCTGCACTTCGCCGGCAAGGAGCAACAACTGAACCGGGACTACCTACTGCGCGACGAGGCTG
GGGAACTCCAGTCATGTTACCAATTACCCCAGGATGCGAAATCTTAGAGAACTGCACTATACAGG
CAACCACATAGATATAGAGATGTCTCTATATATCTACATATATCG
Right flanking sequence: Indices 341772 -- 342271
TCCGGAGCCTAGATGGCTGGCCCCCCGGACCGGAGCCCTGGCACTTCGTGCCACTATAAAAGTGG
CAAGCAAGCAACTTCTGCCCAATGAGTGCAGAAGTTGCTTGCAGAAGGTTCTTTCCCCCGTGCCT
ACCTGAACTTATTCCCCTGCGCGAAGCAGAAGTTCCAACCCGCCCAACAAGAACTTCGCTGCGCG
AAGCAGAAGTTCCAACCAAACTTCTGCCGGCAAACCCTTTGTAAGTAATTTCAGTGGCACAAACA
AACAACTTTACCTTATTCCCACGTGCCACTGAAAGTTACTTACTTTTCGTGCGCAGGGGAAAAGT
TGCTATCCGTGCCAGCCTACCTTAAAGGGTGTTCTTCGCTGCGAAAGCAGCCGAGCCGTTGGTTG
GCACTCTTTTTTTGCCTTCACGTAGCTGCGCGGAGAACCAGCCAACCACCCAGGCAGAAGTTCCT
CTTCCCCTGCGCTCGGTAAAGGTATTACCTTTGTAAGTTTCGAAT
Found at i:342427 original size:6 final size:6
Alignment explanation
Indices: 342416--342440 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
342406 CAGATTTCAA
342416 CAACTT CAACTT CAACTT CAACTT C
1 CAACTT CAACTT CAACTT CAACTT C
342441 TTAGTTCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (6 bp):
CAACTT
Left flanking sequence: Indices 341916 -- 342415
CCCTGCGCGAAGCAGAAGTTCCAACCCGCCCAACAAGAACTTCGCTGCGCGAAGCAGAAGTTCCA
ACCAAACTTCTGCCGGCAAACCCTTTGTAAGTAATTTCAGTGGCACAAACAAACAACTTTACCTT
ATTCCCACGTGCCACTGAAAGTTACTTACTTTTCGTGCGCAGGGGAAAAGTTGCTATCCGTGCCA
GCCTACCTTAAAGGGTGTTCTTCGCTGCGAAAGCAGCCGAGCCGTTGGTTGGCACTCTTTTTTTG
CCTTCACGTAGCTGCGCGGAGAACCAGCCAACCACCCAGGCAGAAGTTCCTCTTCCCCTGCGCTC
GGTAAAGGTATTACCTTTGTAAGTTTCGAATGAGTGCGCAGGGGAAAAGTTGCTATCCGCCTACC
TTTGTAAGTAATTTCAGTGGCCGAATTGTAGGGTGTTTCGCTTACAAAGGTAGGCACGGGTGTGG
GAAACAACCTGGCACGGCCAGGCCATCTTTTAGGACAGATTTCAA
Right flanking sequence: Indices 342441 -- 342940
TTAGTTCTGAGCGTAGCGAAGCAGAAGATCTTGCACGGATAGCAACTTTTCCCCTGCGCACGAAA
AGGCAGGTAGGCACGGACCTTTGGCACGAATCAACAGTTTGCCAAACAAACTCATTGGCCCTCAG
ACCCGGCAGATGTGCAACCACCCTCTCCTTCCCCAGCTTCTGCCGGCTGGTTACCAAAGGCACAT
ACCTTGACCGAGCGCAGGGGAAGAGGAACTTCTGCGGGGGAGGCCCCGGCTAAAGAGTAAAGGTT
CTTTAGCCCCTCCCCTCCCCTTACAAGTTGGGAATCGACGTCTAACGCGTTTAGTGGGGCGTATC
TTACCCCAAGATGAAGGGTGGTTCAATCAATATGAGGCAGAAGTTCTTGACCGAGCGCAGGTTTT
CCCCCAGAGGGAGTTCTTTACCGAGCCAGGAGTTGGGGCTGCGGGGGAAGCAGAAGAACTTCCCA
CCTCTTACCCAGGTATGTGCCTTTACCGAGGGGTTCTCCTCACAA
Found at i:348080 original size:4 final size:4
Alignment explanation
Indices: 348071--348107 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
348061 TTTCAAGAGA
348071 CCTT CCTT CCTT CCTT CCTT CCTT CCTT CCTT CCTT C
1 CCTT CCTT CCTT CCTT CCTT CCTT CCTT CCTT CCTT C
348108 TAAAAGGAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (4 bp):
CCTT
Left flanking sequence: Indices 347571 -- 348070
GGAAGACCTGGCAAAGTCTACTCGTTTCCCCGGGAGCATAACCGGCTTTGTCCACTCGGGAAGGG
AAGACCTTGTTAAAGAAGTCCACTCGACGCACCCGGCCGGGAATACACTCGACGCACCCATAAGG
TCGAGTGGACCGTTCAAGGGTGGGTAAAGAGGTGGTGGGGGATTACTCTTTGTTTGGGGGCCCCG
ACTGAAAGGGGATTAAACCGTGCTAGCCTGGCAGGGGTTTAGAAGACACTCGGCCGGTTTACCGA
GGTATGTGCCTTGACCGAGCGCAGGGGAAGAGGTTAAGGGAAAGCAGCCTACTCAGAGGTGCAGA
AGGGTGTTCTCCGAGCGCAGGGGAAGAGTTTAAGGAAGAGGGAAGACACTCTTTCACTAAGGAAA
CCTGTAAAAGCCTCAAAAGTCGGGATCCAAGTTGCCCCACTCTCCCTCCTTCCCGTACTTCAGAG
GAATATAAGAGGGCTGTTGGGAATACCGGCCGTTTTTTCAAGAGA
Right flanking sequence: Indices 348108 -- 348607
TAAAAGGAAGTCCCGTTTTGCCTACCCCCAAACGACCGACGAGTAATCCCCACACCCAGCCAAGC
CCAGCCAGCTTACCCCCAGCCCACCCCGCTCAGGGGTCCACTTAACCTCTTCCCCTGCGCTCGGT
AAAGGCACATACCTCGCTGCGCTCGGGAAAGGCACATACCGTTTAAGGGTTCTTCCCTTCCCTTC
CCTTCCCTTCCCTTCCCTGGAACTTCCCCTCCCTTCCCTGGAACTTCCCCTCCCTTCCCTGGAAC
TTCCCTTCCTGAGTGTCCGGACCGCTAGACTCCCTCGGGAATACCAACAAAGGTATGTGCCTTGA
CCGAGCGCAGCGAGGTTAAGGAATGGAAGGGGAGAGGGAGAGGGACCCTCATTCCCTTTATCTTC
GGTCCACTTCTACCAGCCCAGCCAGTTTTGGGATAAAGAGGTACGGGGCCCGCCCGGGATAAATT
GCCAACGAGAGCCTACTCTGTTTGGTCCACTTTCAAAGTGGAGTT
Found at i:348252 original size:31 final size:28
Alignment explanation
Indices: 348225--348277 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
348215 TAACCTCTTC
*
348225 CCCTGCGCTCGGTAAAGGCACATA-CCT
1 CCCTGCGCTCGGGAAAGGCACATACCCT
*
348252 CGCTGCGCTCGGGAAAGGCACATACC
1 CCCTGCGCTCGGGAAAGGCACATACC
348278 GTTTAAGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.23, C:0.36, G:0.26, T:0.15
Consensus pattern (28 bp):
CCCTGCGCTCGGGAAAGGCACATACCCT
Left flanking sequence: Indices 347725 -- 348224
TAAAGAGGTGGTGGGGGATTACTCTTTGTTTGGGGGCCCCGACTGAAAGGGGATTAAACCGTGCT
AGCCTGGCAGGGGTTTAGAAGACACTCGGCCGGTTTACCGAGGTATGTGCCTTGACCGAGCGCAG
GGGAAGAGGTTAAGGGAAAGCAGCCTACTCAGAGGTGCAGAAGGGTGTTCTCCGAGCGCAGGGGA
AGAGTTTAAGGAAGAGGGAAGACACTCTTTCACTAAGGAAACCTGTAAAAGCCTCAAAAGTCGGG
ATCCAAGTTGCCCCACTCTCCCTCCTTCCCGTACTTCAGAGGAATATAAGAGGGCTGTTGGGAAT
ACCGGCCGTTTTTTCAAGAGACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTAAAAGG
AAGTCCCGTTTTGCCTACCCCCAAACGACCGACGAGTAATCCCCACACCCAGCCAAGCCCAGCCA
GCTTACCCCCAGCCCACCCCGCTCAGGGGTCCACTTAACCTCTTC
Right flanking sequence: Indices 348278 -- 348777
GTTTAAGGGTTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCCCCTCCCTTCCCTG
GAACTTCCCCTCCCTTCCCTGGAACTTCCCTTCCTGAGTGTCCGGACCGCTAGACTCCCTCGGGA
ATACCAACAAAGGTATGTGCCTTGACCGAGCGCAGCGAGGTTAAGGAATGGAAGGGGAGAGGGAG
AGGGACCCTCATTCCCTTTATCTTCGGTCCACTTCTACCAGCCCAGCCAGTTTTGGGATAAAGAG
GTACGGGGCCCGCCCGGGATAAATTGCCAACGAGAGCCTACTCTGTTTGGTCCACTTTCAAAGTG
GAGTTGGCGATTTCCCGGCATCCTACGGAAACAACCTCAATTGCCAACCTACCGGGGGGGGCCAC
TCTCGAAGTGGAGTCCCCCCGCGCCCCAACTTAGTAGGCCTGCCTTTACTCTTCCCAAACGTCGA
CGGACCGCTTCGTAACTAGCGATCAGAGCCTCTATTGAATAATAG
Found at i:348299 original size:5 final size:5
Alignment explanation
Indices: 348289--348320 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
348279 TTTAAGGGTT
348289 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CT
1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC CT
348321 GGAACTTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (5 bp):
CTTCC
Left flanking sequence: Indices 347789 -- 348288
TAGCCTGGCAGGGGTTTAGAAGACACTCGGCCGGTTTACCGAGGTATGTGCCTTGACCGAGCGCA
GGGGAAGAGGTTAAGGGAAAGCAGCCTACTCAGAGGTGCAGAAGGGTGTTCTCCGAGCGCAGGGG
AAGAGTTTAAGGAAGAGGGAAGACACTCTTTCACTAAGGAAACCTGTAAAAGCCTCAAAAGTCGG
GATCCAAGTTGCCCCACTCTCCCTCCTTCCCGTACTTCAGAGGAATATAAGAGGGCTGTTGGGAA
TACCGGCCGTTTTTTCAAGAGACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTAAAAG
GAAGTCCCGTTTTGCCTACCCCCAAACGACCGACGAGTAATCCCCACACCCAGCCAAGCCCAGCC
AGCTTACCCCCAGCCCACCCCGCTCAGGGGTCCACTTAACCTCTTCCCCTGCGCTCGGTAAAGGC
ACATACCTCGCTGCGCTCGGGAAAGGCACATACCGTTTAAGGGTT
Right flanking sequence: Indices 348321 -- 348820
GGAACTTCCCCTCCCTTCCCTGGAACTTCCCCTCCCTTCCCTGGAACTTCCCTTCCTGAGTGTCC
GGACCGCTAGACTCCCTCGGGAATACCAACAAAGGTATGTGCCTTGACCGAGCGCAGCGAGGTTA
AGGAATGGAAGGGGAGAGGGAGAGGGACCCTCATTCCCTTTATCTTCGGTCCACTTCTACCAGCC
CAGCCAGTTTTGGGATAAAGAGGTACGGGGCCCGCCCGGGATAAATTGCCAACGAGAGCCTACTC
TGTTTGGTCCACTTTCAAAGTGGAGTTGGCGATTTCCCGGCATCCTACGGAAACAACCTCAATTG
CCAACCTACCGGGGGGGGCCACTCTCGAAGTGGAGTCCCCCCGCGCCCCAACTTAGTAGGCCTGC
CTTTACTCTTCCCAAACGTCGACGGACCGCTTCGTAACTAGCGATCAGAGCCTCTATTGAATAAT
AGAGGTAATTCTACATATTACTTTCCGTCGTTAGAGCGTCTTTCT
Found at i:348330 original size:21 final size:21
Alignment explanation
Indices: 348304--348372 Score: 129
Period size: 21 Copynumber: 3.3 Consensus size: 21
348294 CTTCCCTTCC
*
348304 CTTCCCTTCCCTTCCCTGGAA
1 CTTCCCCTCCCTTCCCTGGAA
348325 CTTCCCCTCCCTTCCCTGGAA
1 CTTCCCCTCCCTTCCCTGGAA
348346 CTTCCCCTCCCTTCCCTGGAA
1 CTTCCCCTCCCTTCCCTGGAA
348367 CTTCCC
1 CTTCCC
348373 TTCCTGAGTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.09, C:0.52, G:0.09, T:0.30
Consensus pattern (21 bp):
CTTCCCCTCCCTTCCCTGGAA
Left flanking sequence: Indices 347804 -- 348303
TTAGAAGACACTCGGCCGGTTTACCGAGGTATGTGCCTTGACCGAGCGCAGGGGAAGAGGTTAAG
GGAAAGCAGCCTACTCAGAGGTGCAGAAGGGTGTTCTCCGAGCGCAGGGGAAGAGTTTAAGGAAG
AGGGAAGACACTCTTTCACTAAGGAAACCTGTAAAAGCCTCAAAAGTCGGGATCCAAGTTGCCCC
ACTCTCCCTCCTTCCCGTACTTCAGAGGAATATAAGAGGGCTGTTGGGAATACCGGCCGTTTTTT
CAAGAGACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTAAAAGGAAGTCCCGTTTTGC
CTACCCCCAAACGACCGACGAGTAATCCCCACACCCAGCCAAGCCCAGCCAGCTTACCCCCAGCC
CACCCCGCTCAGGGGTCCACTTAACCTCTTCCCCTGCGCTCGGTAAAGGCACATACCTCGCTGCG
CTCGGGAAAGGCACATACCGTTTAAGGGTTCTTCCCTTCCCTTCC
Right flanking sequence: Indices 348373 -- 348872
TTCCTGAGTGTCCGGACCGCTAGACTCCCTCGGGAATACCAACAAAGGTATGTGCCTTGACCGAG
CGCAGCGAGGTTAAGGAATGGAAGGGGAGAGGGAGAGGGACCCTCATTCCCTTTATCTTCGGTCC
ACTTCTACCAGCCCAGCCAGTTTTGGGATAAAGAGGTACGGGGCCCGCCCGGGATAAATTGCCAA
CGAGAGCCTACTCTGTTTGGTCCACTTTCAAAGTGGAGTTGGCGATTTCCCGGCATCCTACGGAA
ACAACCTCAATTGCCAACCTACCGGGGGGGGCCACTCTCGAAGTGGAGTCCCCCCGCGCCCCAAC
TTAGTAGGCCTGCCTTTACTCTTCCCAAACGTCGACGGACCGCTTCGTAACTAGCGATCAGAGCC
TCTATTGAATAATAGAGGTAATTCTACATATTACTTTCCGTCGTTAGAGCGTCTTTCTTTTCCAG
TTCATGGCCCAACAGGGAGGGGAGGCCTCTTCCCCATGGTCGTGA
Found at i:360001 original size:5 final size:5
Alignment explanation
Indices: 359991--360024 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
359981 CGCAGGGGTT
359991 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
360025 GGGGTTTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 359491 -- 359990
GGCCAATGAGTGCCACTTCTTGGGTTGGGGGAAGGTCCTTCCCCAAAGGTGTGAACAAAAGAATC
TGAGCGCAGAAACCAACTTGAGACTTGCAACCCAAACAACAAACCTTCTGCCTGCGGTTGTTGGA
CAAGAGAGTTTATTCGCGTAGCGAAGTTCTTGTTGGACTTAGCTGAAAGGTTGTAAGAAACTTCT
GCTTCGCGCAGAAACCAACTTGAAACTTGCAACCCAAACAACAAACAACCCTTCTGCCTGCTTAA
AAGTTGGACCTGAAAGGGTTGCAGGCAGGCAGGCTGGCAGAGACTTCTGCTTCGCGCAGAAACCA
AGACCTCCCCCCTTCTGCAAAGCAAAAAAAATATCTTGAAAGTTGGGGTGTTGGTTGCAGAAGAA
CTTCTGCACACGAAACTTCTGCTTGCTTTTTTTGGGACGGGACGCAGCAGATGCTTCGCGCAGCG
AAGAACTTCTGCTCCCAAAAGCAGAAGTCTCTTCGCGCAGGGGTT
Right flanking sequence: Indices 360025 -- 360524
GGGGTTTGCAGAAGTGTGTTTCAACCAACTTTCCTTCTGCACACTTTTTGGAACTCAACTCCGGG
AATAGCTTCGCGCAGCGGGGAAAAGCAAGCAAGCAAGCTCGGGGGAGGGGAAGAGATCCGAAAAA
GATTAATTACAGAAGTTTGTTTGTTTTCGCAGCTACCGACTTCTGCTTTGAACCAAAAGCGCCAA
AAAAAAGTTATGAGCGCAGCTTTCCCTTCCCCCGTGCGGGAAGGAGAACCGTTTGACGGATCTCC
AAAAGCGCCAAAAGGCGCAGCTACCGTGCCAGGACGGATCTCCGGCTAAAGTTCTGAGCGCAGCT
TTCCCCCGTGCCAGGCACGGCACGGATTTATGGCAATTCGTGCCTTCGCTTCGCTGCGCTCAGCA
AAGACCTGAGTGCCACTTTTAATTGAAGTGGCACAAACAGTTTGCCGCAAAAAAGTTCCCACAGT
CTTCGAAACTTTTCGTGCAGAAGGTTGTTGGTTGCAGAAGGTTGT
Found at i:360784 original size:65 final size:64
Alignment explanation
Indices: 360659--360785 Score: 184
Period size: 65 Copynumber: 2.0 Consensus size: 64
360649 CAGAAGTTTT
***
360659 CGCAGAAACTAACTTTCAACTTTTAACCCTTCTGCACACTTTTTGTTTGGACCTCCAAAAAAATG
1 CGCAGAAACTAACTTTCAACTTTTAACCCTTCTGCACAC-TACGGTTTGGACCTCCAAAAAAATG
* *
360724 CGCAGAAATTAACTTTCAACTTTTAACCCTTCTGCACGGC-ACGGTTTGGACCTCCAAAAAAA
1 CGCAGAAACTAACTTTCAACTTTTAACCCTTCTGCAC-ACTACGGTTTGGACCTCCAAAAAAA
360786 GTAGCAGAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
64 19 0.34
65 36 0.64
66 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (64 bp):
CGCAGAAACTAACTTTCAACTTTTAACCCTTCTGCACACTACGGTTTGGACCTCCAAAAAAATG
Left flanking sequence: Indices 360159 -- 360658
AATTACAGAAGTTTGTTTGTTTTCGCAGCTACCGACTTCTGCTTTGAACCAAAAGCGCCAAAAAA
AAGTTATGAGCGCAGCTTTCCCTTCCCCCGTGCGGGAAGGAGAACCGTTTGACGGATCTCCAAAA
GCGCCAAAAGGCGCAGCTACCGTGCCAGGACGGATCTCCGGCTAAAGTTCTGAGCGCAGCTTTCC
CCCGTGCCAGGCACGGCACGGATTTATGGCAATTCGTGCCTTCGCTTCGCTGCGCTCAGCAAAGA
CCTGAGTGCCACTTTTAATTGAAGTGGCACAAACAGTTTGCCGCAAAAAAGTTCCCACAGTCTTC
GAAACTTTTCGTGCAGAAGGTTGTTGGTTGCAGAAGGTTGTTCCAAGGACTTCCAAAAAGAAAGT
AGCAGAAGTTTTCGCAGCGAAGCAGAAGTCTCTTCTGCTTCCAAAAAGAAAGTAGCAGAAGTTTT
CGCAGCGAAGTGGAGGACTTCCAAAAAGAAAGTAGCAGAAGTTTT
Right flanking sequence: Indices 360786 -- 361285
GTAGCAGAAGTTTTCGCAGCGAAGAAACACACTTCTGCCTGCGGGTTGGCGGGGGTTGTTCTGAG
CGCAGCGAATAAACTTCTGCTTCGCTGCGAAAACTTCTGCTACTTTGGTCCTTTGTAATTTCGAA
ACTTCTCGGCCACGGTTGGGGGAAGGCCCTTCCCCAAAGGTAGGCACGGATCCCCGAGTTTTAAA
TCCGTGCCTACCTTATTCGTGGCCGTTTCATTGGCACTCATTAACAACAGTTTGCACGAATCCCC
AGGCACTTCTCTTTTATTTTAGAAGTGTCCCGGCCAACTTCTGCACGAAAAGGCAGGTAGGCACG
GATTTAAGTTGCCGGCGGTAGTGCCCTGCCAGGCAGTTTGTGGCCGAGAAGCCGCCCGCCCTTGG
ATCTCCTAGCTTTCCAGAGTGAGTGTCTTCCCCGGTTTCATCCCCGGCCCGGCTAGCACGGACCG
AGTGGATCCTAACGGAATGCCCCTCGGTAAACCCGCCCCGGGGGA
Done.