Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KX171638
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 364070
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 2 of 3
Found at i:160484 original size:21 final size:21
Alignment explanation
Indices: 160407--160451 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
160397 TGGAACGGGA
160407 CCTTCCCTGGAACTTCCCTTC
1 CCTTCCCTGGAACTTCCCTTC
160428 CCTTCCCTGGAACTTCCCTTC
1 CCTTCCCTGGAACTTCCCTTC
160449 CCT
1 CCT
160452 GGAACTTCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.09, C:0.49, G:0.09, T:0.33
Consensus pattern (21 bp):
CCTTCCCTGGAACTTCCCTTC
Left flanking sequence: Indices 159907 -- 160406
GGCCCGGCTGTCCTCGTGTCTCTGGTCCTAAGCGGTTCAACCACGGGCCGCTCTCCGGTTTGGCC
TTTCTGTTGTTCCCAGAAGGTTGGGTGGGTTCTCGCAGCCCCAACTTCTGGCTCGGTCAAGGCAC
ATACCTTGGATTGCAATTTGGTGTAGGTGAGGTGGGGTTGAGTTCCTCGTGTAGGTTCGAGGCAT
AACGGTGAGTGTAGGTGTTGGAGGTAGGGGCTAAACGGTGGGTGGCTTTCCCGGGTAGTGGCAAG
TGATGTGGGTAGGTGCGAGTGTAAAGTGGGTGGTGGAGTTCAGGTGTAGGTAGTGAGAGTGTGTA
GGGGGTGGGGTTAGTTTTTTTGTGTATTGAGTTCGAGGCAACGGTGCGTGTAGGTGCGGTGGAGT
GGTGGAGGTAGGTTGAGTGAGGTTCGAGGCATAACGGTGCGAGTGAGGTGATCCAAGGAAGCCGG
GGATCCAAACAACCACGGAGATCCAATCCCTTCCCTGGAACGGGA
Right flanking sequence: Indices 160452 -- 160951
GGAACTTCCCTCCCCTGGAACTTCCCTTCCCTCGGTCCGGCACGGGGGAAGCCGAGTGTATTAAA
CCGCCGTTATGCCGGCTTTCACGCACGGCCCCTTTGCAAGGTCTTCCCTCTTATATTCCTCTGAA
GTGCCGTACGGGGGAAGAGGCACGGGTTAGACCCTCGCTTGGGGAACCCGGGAAGCCGAGTGGAT
TAAACCGGCTTACACGGTGCCCAGACGTCCCCTTTGCCAGGTCTTCCCTCTTATATTCCTCTGAA
AGGACAGATTTCAAAAAAAGAGTGCGGTTGGTGCAGGTGAACTCTTATTTTATTGCGGGAAAAGC
AAGCAAGAAAGATCCAAGAAGTCCCCTCTTATATCCCTCTTCAGTTTGTGGGGAAAAGTTACCCC
TGCGCTCGGTCAAGAACTTACCAACCTTCTGCAACCCTTTACCTCGGAGGGGAGGGGAGAACCCC
TGCGCTCGGTAAAGGCACTTCCCTGAACCTCGGAGGGGAGGGGAG
Found at i:162617 original size:16 final size:16
Alignment explanation
Indices: 162595--162633 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
162585 GAAGTTACCC
162595 AATGAGTGCCACGAAG
1 AATGAGTGCCACGAAG
*
162611 GATGAGTGCCACGAAG
1 AATGAGTGCCACGAAG
162627 AATGAGT
1 AATGAGT
162634 TTGTTTGGCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.15, G:0.33, T:0.15
Consensus pattern (16 bp):
AATGAGTGCCACGAAG
Left flanking sequence: Indices 162095 -- 162594
TTAACTGGTCGAGAGGTTCGTTTCACTGGCTTTGCTCGTTAAGGGGCTTGAAGGAGTTTGAATAA
ATCAAGGAGTGGGCAAGTTTGATGCTCACCAACTCTTCGGTCGATTCCGGTCGCCGATCGTTCGA
AATCGAATGTCTTTATCAGTACATAATATATATCCCTGGTCCACCCTGTCGAATCGGTCTTTCTA
ACGAATTCACTTCGGTCAAGTCAATTGTATAAGCACAGGGATCTATCTATACCTTTTATCCTTAT
ATCTCCTCCGCTTTTTAAGAAGAAGCAAGATTATCTATCCGGCTTGCCCGAAAGCGCTGCTTTGC
GCTTTCCTGGACTAAGCCCAAGTCCCTTCACGGGTTTCTTCTTTATTCATGCACTCTACTTGCTT
TGTCTACAAAAACTTGGTCATGCATGGGGGAACCGGTTGTTCTTCGTGCCAAGAAGGTTGTTTGC
CGGCCGGCGCACCCTCTCCTATTCCTCTGATTAGAGAAGTTACCC
Right flanking sequence: Indices 162634 -- 163133
TTGTTTGGCGGGTTGTTGTTTTTCCCCCGTGCCTACCTTTGGTTCCAGGGCCTTCCCCGTGGCCG
AAAAGGTTGTTTCGAAAAGAGTGCCACACAAACAACCAACCGGACAGATTTCCTACAAAAAAAGA
GTGCAACTTCTGCGGGTTGTTTGTTTCTCGGTGAACTTACTTTTTTTTATTGCGGGAAAAGCAGC
CAGAAGTTCGTGTGAACTTCTGTCCAACTTTTTTTTGGACCGGTTAGGGTAATGCGCAGCGGAGC
AGAAGTTTTAACAACCTTTCTTGGTCCAAAAAGCAAGCTCTTCTCCGCACCGCAGGGGAAAAGGT
TGGAAGTTCTCGCGGTGCTCGGTCAAGAACTTCCAACAACCCTTCTGCGTTGGCAGAAGTTCTCT
TCCCCTGCGCTCGGTCAAGAACACCCTTCTGCAACCCTTTTTTTTGGACCAGAAAGGTTGTTGCA
GGCATAAGGTTGTTTGAAACTTCTGCCAGAAGAAGTTTCGCAGCG
Found at i:168812 original size:15 final size:15
Alignment explanation
Indices: 168792--168821 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
168782 TTCTGCACAT
168792 ACCTGTGTGTATTGG
1 ACCTGTGTGTATTGG
168807 ACCTGTGTGTATTGG
1 ACCTGTGTGTATTGG
168822 TCATTGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.33, T:0.40
Consensus pattern (15 bp):
ACCTGTGTGTATTGG
Left flanking sequence: Indices 168292 -- 168791
GTACCGCTTTGCAGGGGTGGGAGAGTGGACCCGAACGGTCCACTCTCCCTTCCCCTTAACCTCTT
CCCCTGCGCTCGGTCAAGAACTCCTGCCACCTCCCCCTGCGCTCGGAGAACACCCTTCTGCACAT
ACCTTGACTTGGATACCGTAGTTGCCCCTTGGATCCGACTTTGTAAGCCGGGCTGGCCGTGCTCA
ATGGGTCCCCCGTCGTACGATTTGGGTGGGCGGCGGACTGAACCCCGTTCCTCATAGCTGTCCGT
GAGATGTCCTTGCCGATAGCATATTCAAATCTCACCCTTGGGTTTGGGCAAGTGCAAAACTTTCC
ATAGCAAGCCGTAGTCCTCGCTCAGGGGGAGAAGCTTTCGTAGTGGATGGGCCGGCATGCTTCGG
TCCCATTGCTCTTACGGGCAACAATGGCCCACCCAAGCCAGAGTTGATCGCATATACTCTCCCCG
CATAAGTTCTCTTCAAACCCCTGCGCTCGGAGAACTTCTGCACAT
Right flanking sequence: Indices 168822 -- 169321
TCATTGATATTAAGGTGTGAACAAAAAAAGAGTGCAAATAAGTTCGCTTGCTTTCGCAGCGGTAA
AAGCAAGCAGGGGGTTCCCTTCCCTTCCCCGGGACTACTCTTTGCTGGCTGAACCAAAAGAACCG
GCGCGGCAGAAGCATAAGTCTCTTACCCACCCCAACCCAACCTTTTTTGGACCAAGAAACCGCGG
CGCGGGAAAAGCTAGCTTTTTTGCAAGCAGGCAGAAGGGTGTTCTTGACCGAGCCAGAAGTTGGG
GCTGCGAGAACTTACACCCTGCCACCTCGCAGAAGTTACCCCTGCGCTCGGTCAAGGTATGTGCC
TTCTGAACTGTATGTGCAGAAGTTCTCCGAGCGCAGGGGTAACTTCTGCGAGGTGGCAGGCAGAA
GGGTGTTCTTGACCGAGCACCGGGGAAGGGAAGGGTAACTTCTGCGAGAACTTCTGCGTATGTGC
AGAAGGGTGTAAGTTCTCCGAGCCCCGCGATAACTTCCCCAGAAG
Found at i:171050 original size:96 final size:96
Alignment explanation
Indices: 170919--171120 Score: 359
Period size: 96 Copynumber: 2.1 Consensus size: 96
170909 CAAAAGTAGT
*
170919 TTCCCAATCCGGAGCCCTTTCCTTTAATAAGGGTTTGCCCTTTGTATCCCTAATTACCATGCTGT
1 TTCCCAATCCGGAGCCCTTTCCTTTAATAAGGGTTTGCCCTTCGTATCCCTAATTACCATGCTGT
** **
170984 CTTTTACTTTGTCCACAATCAACTTCGTCAA
66 CTTCGACTTTGTCCACAATCAACTTCGGAAA
171015 TTCCCAATCCGGAGCCCTTTCCTTTAATAAGGGTTTGCCCTTCGTATCCCTAATTACCATGCTGT
1 TTCCCAATCCGGAGCCCTTTCCTTTAATAAGGGTTTGCCCTTCGTATCCCTAATTACCATGCTGT
171080 CTTCGACTTTGTCCACAATCAACTTCGGAAA
66 CTTCGACTTTGTCCACAATCAACTTCGGAAA
171111 TTCCCAATCC
1 TTCCCAATCC
171121 TCCGCCCTTT
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 101 1.00
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (96 bp):
TTCCCAATCCGGAGCCCTTTCCTTTAATAAGGGTTTGCCCTTCGTATCCCTAATTACCATGCTGT
CTTCGACTTTGTCCACAATCAACTTCGGAAA
Left flanking sequence: Indices 170419 -- 170918
GAACCCCTCCTTCTCCGGCTGTGGGGTGTGGAGGGAAGGAAATACAGTTTATCCTTCAGACGGAA
ACTCCCCCCCGGAGAGTTAAAAATCTTTGACCCAACTCGAGCGAAAACGACTTTTCGGTCCTTCC
AGCCGTCCTCGGCGTTTCCGGCGTATTGGGGGAAACCGTTGATAAAGCCTTCCATATCCATAACC
TCTTGCATATCGGGGAACTCATATGCAGAATTAAGGACATTTTCGAGCCAGTCTACCATAGACCG
AACCCTTTGCCGATAGAATAAGAATTCATTCACACGTGAACGGAACTCTTTGTGTAGGTCGGTTC
TGTACTTCGTACCTCTATCTATGGTGTCTTCGATAGGGCCCCCAATATGAGCAAACTCCGGGGTC
GCCGTGTTTATTAACCGATACTCCGCCTTTCTCTCTAAATAGTTATTGCCCTTTGGATCCCCAAC
TACTATGCCGTCTTTTACTTTGTCTAAACTCAACTCAAAAGTAGT
Right flanking sequence: Indices 171121 -- 171620
TCCGCCCTTTTTCTCAACAAAGCCGCTCTTTCGGCGAGTTCCTGAGCTTTTTTGGCGAGTTTATG
AGCTCTTTTCAAATGAATGACTGTTTTCGTAATCGATTTACAAAATGGATCTGCGAACTGTATAG
AATCATTATTCACTGGAATGGGATAAGTGATTAATTTATGTAATCTCTTTGGGAGAGTGGAATCC
ACCAGAGATACAATAGGTATTTGTAATCGATTAGCTTCGAGTATAGCTAGGAAATCTCTATGTGC
ATTCAGTATAACTAAACGATCCGGAATTTGGCGTGTCATGAGTCCCGATTTTCGCATCTTTAGAG
AACGTGGACTGGGATGCTGCGCGGATAAATCTTCAAGGCGTTTCCCATGGTTCATATGCTTCCAA
TTGGTTGAAAAACCACCAATCCACTTATAAGAAACATGGCTTTGATTGGTTTTTTTCGCCATTCT
TTCAATTATGTGATTGGGGAAAGGATCGGTATTTACCAACAATGA
Found at i:171187 original size:21 final size:21
Alignment explanation
Indices: 171145--171194 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
171135 CAACAAAGCC
* *
171145 GCTCTTTCGGCGAGTTCCTGA
1 GCTCTTTTGGCGAGTTCATGA
* *
171166 GCTTTTTTGGCGAGTTTATGA
1 GCTCTTTTGGCGAGTTCATGA
171187 GCTCTTTT
1 GCTCTTTT
171195 CAAATGAATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.10, C:0.20, G:0.26, T:0.44
Consensus pattern (21 bp):
GCTCTTTTGGCGAGTTCATGA
Left flanking sequence: Indices 170645 -- 171144
TAAGGACATTTTCGAGCCAGTCTACCATAGACCGAACCCTTTGCCGATAGAATAAGAATTCATTC
ACACGTGAACGGAACTCTTTGTGTAGGTCGGTTCTGTACTTCGTACCTCTATCTATGGTGTCTTC
GATAGGGCCCCCAATATGAGCAAACTCCGGGGTCGCCGTGTTTATTAACCGATACTCCGCCTTTC
TCTCTAAATAGTTATTGCCCTTTGGATCCCCAACTACTATGCCGTCTTTTACTTTGTCTAAACTC
AACTCAAAAGTAGTTTCCCAATCCGGAGCCCTTTCCTTTAATAAGGGTTTGCCCTTTGTATCCCT
AATTACCATGCTGTCTTTTACTTTGTCCACAATCAACTTCGTCAATTCCCAATCCGGAGCCCTTT
CCTTTAATAAGGGTTTGCCCTTCGTATCCCTAATTACCATGCTGTCTTCGACTTTGTCCACAATC
AACTTCGGAAATTCCCAATCCTCCGCCCTTTTTCTCAACAAAGCC
Right flanking sequence: Indices 171195 -- 171694
CAAATGAATGACTGTTTTCGTAATCGATTTACAAAATGGATCTGCGAACTGTATAGAATCATTAT
TCACTGGAATGGGATAAGTGATTAATTTATGTAATCTCTTTGGGAGAGTGGAATCCACCAGAGAT
ACAATAGGTATTTGTAATCGATTAGCTTCGAGTATAGCTAGGAAATCTCTATGTGCATTCAGTAT
AACTAAACGATCCGGAATTTGGCGTGTCATGAGTCCCGATTTTCGCATCTTTAGAGAACGTGGAC
TGGGATGCTGCGCGGATAAATCTTCAAGGCGTTTCCCATGGTTCATATGCTTCCAATTGGTTGAA
AAACCACCAATCCACTTATAAGAAACATGGCTTTGATTGGTTTTTTTCGCCATTCTTTCAATTAT
GTGATTGGGGAAAGGATCGGTATTTACCAACAATGAATGGCCTTCTCCACGAATAATAGATCTTA
TCACATCACAAGCAATCTTTGTAAATAATAATGTTCTTTCCGAAT
Found at i:173494 original size:26 final size:25
Alignment explanation
Indices: 173451--173501 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
173441 AGGACCGGTC
*
173451 GAGTGGGCCTTTATGCAGGGGTGGGA
1 GAGTGGACCTTTATGCA-GGGTGGGA
173477 GAGTGGACCGTTTA-GCAGGGTGGGA
1 GAGTGGACC-TTTATGCAGGGTGGGA
173502 TCCCCCCCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 11 0.48
27 4 0.17
ACGTcount: A:0.18, C:0.12, G:0.49, T:0.22
Consensus pattern (25 bp):
GAGTGGACCTTTATGCAGGGTGGGA
Left flanking sequence: Indices 172951 -- 173450
TTTGAAGGAAAAGCTCTTCTCCGCAGAAGCTCTCGCGGGGCTCGGAGAACTTCTGCACATACAGT
TGCAGAAGGCACATACCTTGACCGAGCGCAGGGCCGTTCCTCTCTCTTATATCCCTCTGAAGTTT
GTGAGGAGAACCCCTCGGTAAAGGCACATACCTGGGGAAGAGGTGGGAAGTTCTTCTGCTTCCCC
CGCAGCCCCAACTCCTGGCTCGGTCAAGAACTTCCAACTTTTAACCCTCCTGCCACCTCTGGAAC
CCCTGGCAAAGTCGGGATCCAAGTTGTCTTCCCCCACAACTGTTTTTTTTTGTTTTGTTTTGGAC
CCATTTGTTTTGGACCTCCAATTTGTTTTTTTTGCGGTTTGGTAGGGTATTTAAAGCTCATCCAA
ACAACTTTGAGCTGGGAACGGCACGGAGAACTTCGTGCAACCTCAGACCCTCTCAGAGGAATAGA
AGGAGGGGCGGGAGAGTGGACTTTTACGGTATCCAAGGACCGGTC
Right flanking sequence: Indices 173502 -- 174001
TCCCCCCCGTACGGCAGCCTACTCCAGAGGCAGGAGTTCTTTACCGAGCGCAGGGGTAACTTATG
CGAGGTTAAGGAAGAGGGAAGACACCCGACCGTAAAGGTCCACTCTCCCTTCCCCTGCCACCTCG
CAGAAGTTACCCCTGCGCTCGGTCAAGAACTCCTGCCACCTCTGGGGGAAGACCTGCGCTCGGTC
AAGAACACCCTTCTGCAACCCAAAAAGCTTTGGATACCACCCGTCAAGGGGGAACCACTCTCCCA
CCCCGGCAGGGTGGGATCCAAGGACTTCCCCCTGTACGCCGGTGAAGGGGAAGACACTCGACCGG
ATACCGGCCCACTCGACTTACGGGCGTTTTACCCCTTATGTAATAACCAGTCCCCCTACCTTTTG
CCTTGTGCCGGCCCACTATCCCTCCTACCCGCCCGAGGCTCCGGAAGTACTCCATCACTCGGTTT
TACGGGGAGTGAATGATTGTGAAGCCGAACGCATAGAGGTACTCC
Found at i:175760 original size:45 final size:46
Alignment explanation
Indices: 175710--175801 Score: 148
Period size: 50 Copynumber: 1.9 Consensus size: 46
175700 TAAAGGTATT
175710 CCCAACCCAACCTTTTGCCTCGCTACGCTCGGTAAAGGTAAGCAACCCAA
1 CCCAACCCAACCTTTTGCCTCGCTACGCTCGGTAAAGGTAAG----CCAA
175760 CCCAACCCAACCTTTTGCCTCGCTACGCTCGGTAAAGGTAAG
1 CCCAACCCAACCTTTTGCCTCGCTACGCTCGGTAAAGGTAAG
175802 ACCTGAACCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (46 bp):
CCCAACCCAACCTTTTGCCTCGCTACGCTCGGTAAAGGTAAGCCAA
Left flanking sequence: Indices 175210 -- 175709
AACCTTCTGCGGATTTCCTGGCACTTCGCTGCGCTCAGAAAGCGCTTTTGGAAATCCGCAGAAGG
TGTGCAGAAGGGTTGGGTTGTTCTTCGCTGCGCTCAGATTCAACACGAAGGCCAACAAGAACTCT
TCCCCGGAGAACCCCTGCGCGGAGAACCGGCAACCTTCTGCCAACAACCTTCTGCTTCCCCCCAA
CAACCCAGAAGTTCAAACCAAACAACCTTTTCCCCTGGCCCAACTTTAAAGCAGAAGTTTCTACG
CGAAGAACCAGCCAACCCACCTTCTGGAGGTCCGGTAAACCCGCCAACCCTTCTTGGTCCAACAA
GAACTTTCGGTAGCTGCGCGAAGATTCAACCGCCAACCCGCAGAAGTTGGCAGAAGAACTTCTGC
AAACCCCGGAGGGGAGGGGAGGGGAGGGGAGAACCCCTGCGCGAAGCAGGAGTTTCACGCAAGCA
AACAACCCTTCACCTCTTCAAAACCCTGCGCTCGGTAAAGGTATT
Right flanking sequence: Indices 175802 -- 176301
ACCTGAACCTCCCTCTTATATTCCTCTGAAGTGGGGAAAAGGGCCCTGCGCTCGGTAAAGGTAAT
ACCTGATTTCTTGGTCCTTTGTAAGTTTCGAAACTTTTCGGCAGGGCAGAAGTTTGGGTTCTCCG
TGCCCAAAAAGTTGGAAACTTTTCGGCCACGGGAAGGGCCCTTCCCCAAAGGTAGGCACGGAGAA
CCCAAACTTCTGCCCTGCCGAAAAGGTTGTTTCGAAATGACAAAGGTAGGCACGGATAAAAGGCA
GGCAGGCAGGCCCTCATTGGCACTCATCCCCAGGCACGAATTCGTAGTGGCACTACCGTGGGACT
AAGCCAGGGACTCCTTAAAGTTGGTTGTTGGATCTCCTATCCCGGTGGGTGGTCTTACGAGTGTC
TTCCCTCTTCCTCTGTAAGAAGTGCCGTACGGGGGACTCCGGATCTCCTATCCTTCAGAACCGGG
TCTTAATTGATACTCAATGGTCTATTCCTATGCAATCGTCGGAAG
Found at i:179715 original size:5 final size:5
Alignment explanation
Indices: 179705--179740 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
179695 CAGGGGTTCT
179705 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC C
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC C
179741 ACAAACAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 179205 -- 179704
CCATAAATCATCCTCACTGAACCCCCCGCAACGGCTTTTCCTTAACCTCTTCCCCGGTGCTCGGT
AAAGAACTTCCAACAACCCTTCTGCGCAGAAGGGTTGGGTGTTCTCGCAGCCCCAACTTCTGGCT
CGGTCAAGAACACCCTTCTGCTGTGCTGCAAAACTCTAGATGTTTTATTGAGTCTAAAGCCCCCT
TCCCGCGGGGCAGTAAGGAACTCCAGAAGGTTGTTTGGTTGGCTGGTTCTTCGCGCAGAAACTTC
TGCGGTTGTTGGGGAAGACCAGAAGTTAGTTCTTTTGGTGTGAACTTCTGCTTCGCGCAGGGGAA
GGAGAACTTCTGACGATTTCCAGAAGGTTGTTTGGTGTGAACTTCTGCTTCGCGCAGAAACTTCT
GCTTAAAAGTTGGGCCAGGGTAAAAGGTTGTTTGGTTTGAACTTCTGGGTTGTTGGGGGGAAGCA
GAAGGTTGTTGGCAGAAGGTTGCCGGTTCTTCGCGCAGGGGTTCT
Right flanking sequence: Indices 179741 -- 180240
ACAAACAACCAACCAACCTCTCCCCTCCCCTCCCCGGGGAAGAGTTCTTTTCTTGTTGGGCCAGA
AGTTTGGTTGGCAAAAGGTTGTTGGCAGAAGGTTGCCGGTTCTTCGCGCAGGGGTTCTCCGGAGT
GAAGGCATTGGTGGAAAAGAACGAATCCCGGCATGCCAAATGCGTGGATACTTGCCAGCTAACTC
TCAAGCTGGCTGGCTTCTGGGGCCCCTTCCTTGGGGCTCCTTCCAACCTTCGCCCCCGTCGCTTG
TTGTATGAACATGATCAAGAAGGGCTTGCTTGCTTCGGGGAAGGGCCGGATCTTATCTTCTGACG
AAAGGGACTTCCGACGCGGGTCACATCTTTTAAGATTGTTCCGAAGGCACGCACATGGAAGGGTC
ACATCTCTGATGGGGACTTCCGACGGAAACCACGTATATAGAGGAGGCCACGCCACGTATATAGA
GGAGGCGGAGACCACGTATATAGAGGAGGCGGAGAACACGTATAT
Found at i:180215 original size:24 final size:24
Alignment explanation
Indices: 180154--180243 Score: 130
Period size: 24 Copynumber: 3.8 Consensus size: 24
180144 GGACTTCCGA
*
180154 CGGAAACCACGTATATAGAGGAGG
1 CGGAGACCACGTATATAGAGGAGG
*
180178 C-CACG-CCACGTATATAGAGGAGG
1 CGGA-GACCACGTATATAGAGGAGG
180201 CGGAGACCACGTATATAGAGGAGG
1 CGGAGACCACGTATATAGAGGAGG
*
180225 CGGAGAACACGTATATAGA
1 CGGAGACCACGTATATAGA
180244 TAGAGGATAC
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
23 21 0.36
24 38 0.64
ACGTcount: A:0.36, C:0.19, G:0.32, T:0.13
Consensus pattern (24 bp):
CGGAGACCACGTATATAGAGGAGG
Left flanking sequence: Indices 179654 -- 180153
GAAGCAGAAGGTTGTTGGCAGAAGGTTGCCGGTTCTTCGCGCAGGGGTTCTCCTCCCCTCCCCTC
CCCTCCCCTCCCCTCCCCTCCCACAAACAACCAACCAACCTCTCCCCTCCCCTCCCCGGGGAAGA
GTTCTTTTCTTGTTGGGCCAGAAGTTTGGTTGGCAAAAGGTTGTTGGCAGAAGGTTGCCGGTTCT
TCGCGCAGGGGTTCTCCGGAGTGAAGGCATTGGTGGAAAAGAACGAATCCCGGCATGCCAAATGC
GTGGATACTTGCCAGCTAACTCTCAAGCTGGCTGGCTTCTGGGGCCCCTTCCTTGGGGCTCCTTC
CAACCTTCGCCCCCGTCGCTTGTTGTATGAACATGATCAAGAAGGGCTTGCTTGCTTCGGGGAAG
GGCCGGATCTTATCTTCTGACGAAAGGGACTTCCGACGCGGGTCACATCTTTTAAGATTGTTCCG
AAGGCACGCACATGGAAGGGTCACATCTCTGATGGGGACTTCCGA
Right flanking sequence: Indices 180244 -- 180743
TAGAGGATACCACGCCACGTATACAGAGGAGTTGTGCGGAGACCACGCCACTTAGATATATTTAT
ATATCCTATATTATAGATATATCAATATATAAAGGAGTGGTGAGGAAAGGAACCTTTGCTTCGGT
GCTGGCCCTACAACCTTTTAGCCAGCCTGGAGTGAACGGCAGTAAACTTAGCCTGACTCCGACCC
TACTTGAAAGCAAGCCCCAAATAAGATTGATTCCAGGACCAAGTTTGTTTGAAGGTGTGACCTCC
AGAAGGTTGTTTGGTGTGAACTTCTGCTTCGCGTAGAACTTCTGCGGTTGTTGGGCGGGGTTGGC
AAAAGGTTGTTGGTTCTCCGCGGGGAAGAGTTCTTGTTGGCGTGTTGAATCTGAGCGCAGCTTTC
CCTTCCCCCGTGCCAAAAGTTCTTGTTGGACCAAGAAAGTGCGTGCGAACTTTTGCTTCGCGCAG
GGGAAGGAGCAGGAGTTACAACCCGGATTTCCAGAAGGTGTGAAC
Found at i:180767 original size:15 final size:15
Alignment explanation
Indices: 180749--180782 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
180739 TGAACTTCTG
180749 CTTCTTCTTCTTCCC
1 CTTCTTCTTCTTCCC
180764 CTTCTTCTTCTTCCC
1 CTTCTTCTTCTTCCC
180779 CTTC
1 CTTC
180783 CCCCCGCGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (15 bp):
CTTCTTCTTCTTCCC
Left flanking sequence: Indices 180249 -- 180748
GATACCACGCCACGTATACAGAGGAGTTGTGCGGAGACCACGCCACTTAGATATATTTATATATC
CTATATTATAGATATATCAATATATAAAGGAGTGGTGAGGAAAGGAACCTTTGCTTCGGTGCTGG
CCCTACAACCTTTTAGCCAGCCTGGAGTGAACGGCAGTAAACTTAGCCTGACTCCGACCCTACTT
GAAAGCAAGCCCCAAATAAGATTGATTCCAGGACCAAGTTTGTTTGAAGGTGTGACCTCCAGAAG
GTTGTTTGGTGTGAACTTCTGCTTCGCGTAGAACTTCTGCGGTTGTTGGGCGGGGTTGGCAAAAG
GTTGTTGGTTCTCCGCGGGGAAGAGTTCTTGTTGGCGTGTTGAATCTGAGCGCAGCTTTCCCTTC
CCCCGTGCCAAAAGTTCTTGTTGGACCAAGAAAGTGCGTGCGAACTTTTGCTTCGCGCAGGGGAA
GGAGCAGGAGTTACAACCCGGATTTCCAGAAGGTGTGAACTTCTG
Right flanking sequence: Indices 180783 -- 181282
CCCCCGCGCAGGGGAAGAAGTGAAGCCGGAAACTCTCCTCCAGCCCAGCCCAGCCCAGTCCAGCC
CAGCCCAGTCCCGAAGGAACTTCTGCTTCGCGCAGGGGAAGGAGTGAAGGCAGGCACGTGCCAAG
CCAAGATGTGCGGGCAATAAGTTCCTCGCAGGCCCTGCGCTCGGTCAAGAACTTCCAACTTTTAA
CCCAACCCTTCTGCGCAGAAGGGTTGGGTGTTCTCGCAGCCCCAACTTCTGGCTCGGTAAAGGCA
CATACCTGCACGAGCTCGCCAACCTGGCTCGGTAGCTCACCAACCGGGCTCGTGGCTTAGAGCTC
ACGGGGGAGGGGCCCACTTTGTCCGGGGCCCCGACGCCACAACAGTTTGTCTTGCTTTGGGGGCC
CCGCCCCGGGTTCTTTGGGTGGGAAGTTGGTTGGATAAAAGTACCCGGCTCCGCAACAAAACCTC
TTCGCAACAGTAATCTCTAATCCTTTCTCTCATTTGCCTAATCCG
Found at i:180832 original size:5 final size:5
Alignment explanation
Indices: 180822--180855 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
180812 AAACTCTCCT
*
180822 CCAGC CCAGC CCAGC CCAGT CCAGC CCAGC CCAG
1 CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAG
180856 TCCCGAAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.21, C:0.56, G:0.21, T:0.03
Consensus pattern (5 bp):
CCAGC
Left flanking sequence: Indices 180322 -- 180821
TAGATATATCAATATATAAAGGAGTGGTGAGGAAAGGAACCTTTGCTTCGGTGCTGGCCCTACAA
CCTTTTAGCCAGCCTGGAGTGAACGGCAGTAAACTTAGCCTGACTCCGACCCTACTTGAAAGCAA
GCCCCAAATAAGATTGATTCCAGGACCAAGTTTGTTTGAAGGTGTGACCTCCAGAAGGTTGTTTG
GTGTGAACTTCTGCTTCGCGTAGAACTTCTGCGGTTGTTGGGCGGGGTTGGCAAAAGGTTGTTGG
TTCTCCGCGGGGAAGAGTTCTTGTTGGCGTGTTGAATCTGAGCGCAGCTTTCCCTTCCCCCGTGC
CAAAAGTTCTTGTTGGACCAAGAAAGTGCGTGCGAACTTTTGCTTCGCGCAGGGGAAGGAGCAGG
AGTTACAACCCGGATTTCCAGAAGGTGTGAACTTCTGCTTCTTCTTCTTCCCCTTCTTCTTCTTC
CCCTTCCCCCCGCGCAGGGGAAGAAGTGAAGCCGGAAACTCTCCT
Right flanking sequence: Indices 180856 -- 181355
TCCCGAAGGAACTTCTGCTTCGCGCAGGGGAAGGAGTGAAGGCAGGCACGTGCCAAGCCAAGATG
TGCGGGCAATAAGTTCCTCGCAGGCCCTGCGCTCGGTCAAGAACTTCCAACTTTTAACCCAACCC
TTCTGCGCAGAAGGGTTGGGTGTTCTCGCAGCCCCAACTTCTGGCTCGGTAAAGGCACATACCTG
CACGAGCTCGCCAACCTGGCTCGGTAGCTCACCAACCGGGCTCGTGGCTTAGAGCTCACGGGGGA
GGGGCCCACTTTGTCCGGGGCCCCGACGCCACAACAGTTTGTCTTGCTTTGGGGGCCCCGCCCCG
GGTTCTTTGGGTGGGAAGTTGGTTGGATAAAAGTACCCGGCTCCGCAACAAAACCTCTTCGCAAC
AGTAATCTCTAATCCTTTCTCTCATTTGCCTAATCCGCCTCGCAGGTTTTGTGCGGCATAAGGCC
GGCGTTCTCTCAGGGGTTCAAGTTCCTCTCGCAGGATTGAATATC
Found at i:180845 original size:15 final size:15
Alignment explanation
Indices: 180822--180858 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
180812 AAACTCTCCT
*
180822 CCAGCCCAGCCCAGC
1 CCAGTCCAGCCCAGC
180837 CCAGTCCAGCCCAGC
1 CCAGTCCAGCCCAGC
180852 CCAGTCC
1 CCAGTCC
180859 CGAAGGAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.19, C:0.57, G:0.19, T:0.05
Consensus pattern (15 bp):
CCAGTCCAGCCCAGC
Left flanking sequence: Indices 180322 -- 180821
TAGATATATCAATATATAAAGGAGTGGTGAGGAAAGGAACCTTTGCTTCGGTGCTGGCCCTACAA
CCTTTTAGCCAGCCTGGAGTGAACGGCAGTAAACTTAGCCTGACTCCGACCCTACTTGAAAGCAA
GCCCCAAATAAGATTGATTCCAGGACCAAGTTTGTTTGAAGGTGTGACCTCCAGAAGGTTGTTTG
GTGTGAACTTCTGCTTCGCGTAGAACTTCTGCGGTTGTTGGGCGGGGTTGGCAAAAGGTTGTTGG
TTCTCCGCGGGGAAGAGTTCTTGTTGGCGTGTTGAATCTGAGCGCAGCTTTCCCTTCCCCCGTGC
CAAAAGTTCTTGTTGGACCAAGAAAGTGCGTGCGAACTTTTGCTTCGCGCAGGGGAAGGAGCAGG
AGTTACAACCCGGATTTCCAGAAGGTGTGAACTTCTGCTTCTTCTTCTTCCCCTTCTTCTTCTTC
CCCTTCCCCCCGCGCAGGGGAAGAAGTGAAGCCGGAAACTCTCCT
Right flanking sequence: Indices 180859 -- 181358
CGAAGGAACTTCTGCTTCGCGCAGGGGAAGGAGTGAAGGCAGGCACGTGCCAAGCCAAGATGTGC
GGGCAATAAGTTCCTCGCAGGCCCTGCGCTCGGTCAAGAACTTCCAACTTTTAACCCAACCCTTC
TGCGCAGAAGGGTTGGGTGTTCTCGCAGCCCCAACTTCTGGCTCGGTAAAGGCACATACCTGCAC
GAGCTCGCCAACCTGGCTCGGTAGCTCACCAACCGGGCTCGTGGCTTAGAGCTCACGGGGGAGGG
GCCCACTTTGTCCGGGGCCCCGACGCCACAACAGTTTGTCTTGCTTTGGGGGCCCCGCCCCGGGT
TCTTTGGGTGGGAAGTTGGTTGGATAAAAGTACCCGGCTCCGCAACAAAACCTCTTCGCAACAGT
AATCTCTAATCCTTTCTCTCATTTGCCTAATCCGCCTCGCAGGTTTTGTGCGGCATAAGGCCGGC
GTTCTCTCAGGGGTTCAAGTTCCTCTCGCAGGATTGAATATCTGT
Found at i:181080 original size:21 final size:21
Alignment explanation
Indices: 181055--181094 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
181045 TACCTGCACG
* *
181055 AGCTCGCCAACCTGGCTCGGT
1 AGCTCACCAACCGGGCTCGGT
181076 AGCTCACCAACCGGGCTCG
1 AGCTCACCAACCGGGCTCG
181095 TGGCTTAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.40, G:0.28, T:0.15
Consensus pattern (21 bp):
AGCTCACCAACCGGGCTCGGT
Left flanking sequence: Indices 180555 -- 181054
TGGGCGGGGTTGGCAAAAGGTTGTTGGTTCTCCGCGGGGAAGAGTTCTTGTTGGCGTGTTGAATC
TGAGCGCAGCTTTCCCTTCCCCCGTGCCAAAAGTTCTTGTTGGACCAAGAAAGTGCGTGCGAACT
TTTGCTTCGCGCAGGGGAAGGAGCAGGAGTTACAACCCGGATTTCCAGAAGGTGTGAACTTCTGC
TTCTTCTTCTTCCCCTTCTTCTTCTTCCCCTTCCCCCCGCGCAGGGGAAGAAGTGAAGCCGGAAA
CTCTCCTCCAGCCCAGCCCAGCCCAGTCCAGCCCAGCCCAGTCCCGAAGGAACTTCTGCTTCGCG
CAGGGGAAGGAGTGAAGGCAGGCACGTGCCAAGCCAAGATGTGCGGGCAATAAGTTCCTCGCAGG
CCCTGCGCTCGGTCAAGAACTTCCAACTTTTAACCCAACCCTTCTGCGCAGAAGGGTTGGGTGTT
CTCGCAGCCCCAACTTCTGGCTCGGTAAAGGCACATACCTGCACG
Right flanking sequence: Indices 181095 -- 181594
TGGCTTAGAGCTCACGGGGGAGGGGCCCACTTTGTCCGGGGCCCCGACGCCACAACAGTTTGTCT
TGCTTTGGGGGCCCCGCCCCGGGTTCTTTGGGTGGGAAGTTGGTTGGATAAAAGTACCCGGCTCC
GCAACAAAACCTCTTCGCAACAGTAATCTCTAATCCTTTCTCTCATTTGCCTAATCCGCCTCGCA
GGTTTTGTGCGGCATAAGGCCGGCGTTCTCTCAGGGGTTCAAGTTCCTCTCGCAGGATTGAATAT
CTGTTGTTTACACACATGTTTGTTTGTTGCCGCTCGCTTAGCGGCTCCGCAGAAGAACTTCTGCT
CTCTCTTATATCCCTCTGAAGTTAGTTTGTGGGCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCC
TTCCCTTCCCCGGTGCTCGGAGAACTTACAACCTTCTGCACATACCTTGTGCCCTCCCCTCCAAG
CTTGCTCCTCCCTTAACCTCTTCCCCTGCGCTCGGAGAACTTCTG
Found at i:181463 original size:5 final size:5
Alignment explanation
Indices: 181453--181494 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
181443 AGTTTGTGGG
181453 CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CC
1 CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CC
181495 CGGTGCTCGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (5 bp):
CCTTC
Left flanking sequence: Indices 180953 -- 181452
TCGGTCAAGAACTTCCAACTTTTAACCCAACCCTTCTGCGCAGAAGGGTTGGGTGTTCTCGCAGC
CCCAACTTCTGGCTCGGTAAAGGCACATACCTGCACGAGCTCGCCAACCTGGCTCGGTAGCTCAC
CAACCGGGCTCGTGGCTTAGAGCTCACGGGGGAGGGGCCCACTTTGTCCGGGGCCCCGACGCCAC
AACAGTTTGTCTTGCTTTGGGGGCCCCGCCCCGGGTTCTTTGGGTGGGAAGTTGGTTGGATAAAA
GTACCCGGCTCCGCAACAAAACCTCTTCGCAACAGTAATCTCTAATCCTTTCTCTCATTTGCCTA
ATCCGCCTCGCAGGTTTTGTGCGGCATAAGGCCGGCGTTCTCTCAGGGGTTCAAGTTCCTCTCGC
AGGATTGAATATCTGTTGTTTACACACATGTTTGTTTGTTGCCGCTCGCTTAGCGGCTCCGCAGA
AGAACTTCTGCTCTCTCTTATATCCCTCTGAAGTTAGTTTGTGGG
Right flanking sequence: Indices 181495 -- 181994
CGGTGCTCGGAGAACTTACAACCTTCTGCACATACCTTGTGCCCTCCCCTCCAAGCTTGCTCCTC
CCTTAACCTCTTCCCCTGCGCTCGGAGAACTTCTGCACATACGCGGCGGCGGTGCTCGGAGAACT
TACAACCTTCTGCACATACCTTGCGCCCTCCTTATAAATAGAACCAGGATTGATCCTATTTAGTC
AGTACTAGTTCGGATAGTTTACAGCCAGGCTTGGACCAGACTTGGAATCACGTACATAGAGCGAA
CCGAGGCGCGAACGAAAGCACGAAGAGAAGCAAGATTTAGACAGGACGTACAATCATCAGCACGT
TCATTCTTTCACAGACAATACAGGACAGGAGGGAAGAGCCGGTTAGCGAAGGGATTCCAGAAACA
CAATACATGGGGGGAGGATTGGCATGGGGCAGCCCAGAGACACACTCAAAGGATTGCTCTTAAGG
TGTGAACAAAACAAAGAAAGAGTTAGTTCTGAGCGCAGCAGAAGA
Found at i:183089 original size:5 final size:5
Alignment explanation
Indices: 183079--183144 Score: 123
Period size: 5 Copynumber: 13.2 Consensus size: 5
183069 TCGTCCCGGG
*
183079 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA TGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
183129 GGGGA GGGGA GGGGA G
1 GGGGA GGGGA GGGGA G
183145 AACCGCTTGC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 59 1.00
ACGTcount: A:0.20, C:0.00, G:0.79, T:0.02
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 182579 -- 183078
TGCGCTGTTTTCTGGCAAAGTCGGGATCCAAGTTGTCTTCCCCGCCCGACCCCGGCGGGTGAAAG
AAGATTCTTGGGGACAGATTTCCTTCGCAAGCAACTTTTATCCCCCCCCTGCGCTCAGAAAGCAA
GCAAGCAAAAAGTGTTTTGTTTTGTTTTGGAAGCATAAGTTCGCAGAAGTTAGTCTCCCGCTGCG
CGAAGCAGAAGTTTCGGTCCCTGCCACCTCCCTCTTATATTACTCTGAAGGTTGGTTGTTTGTGG
GGAGAAGTTACCCCGTGCTCGGAGAACTTACACCCTTCTGCACATACCTGCCTGCCACCTCTGGG
GGAAAACCTGCGCTCGGTCAAGAACTTCCAACCTTCTGCCTGCCACCTCCCTCTTATATTACTCT
GAAGGTTGGTTGTTTGTGGGGAGAACCCCTGCGCTCGGAGAACACCCTTCTGCACATACCTTCTG
GACTTACTTCTTTTTGCAGCCAGCAAGAAGCAGCTTCGTCCCGGG
Right flanking sequence: Indices 183145 -- 183644
AACCGCTTGCTTTTCCCGCTGCGAACAACCAACCTTCCTTAACCTCTTCCCCTGCGCTCGGTCAA
GGTAATACAACCCAACTTTTAACCCAACCGTTGCACTCTTTTTTTGAAATCTGTCCTTCTTTTTC
CGGTATAGCTAGCTGGCGGTAATAGCTTAATGGTAGAGTATAGCCTTGCCAAGGCTGAGGTTGAG
GGTTCGAGTCCCTTTTACCGCTCACTACTTGGGGGGGACTTTGAAGGTACTTATCCCAATAGCCT
GTATGGGAGCGTAAACAGGTGGTACAGTGGTGAGATCTTTGATTAAGAGCTTGAAAGCTAAGCTA
GCTTTCAAACGCTTTTACCCGCGAGCGCCCGAATTCAATGAATAGGCTGCAGCGTAGCGCTTGAC
TGAAGCTCTGGGAATCCGAGACTGACCGAGATACCTCCATCTAAGTAGCGATCGGCATCCAGTAA
AGTCGGACCTATGCTCTTAGGTAGGTTTACCGGCCTCGGCCCCGC
Found at i:184172 original size:15 final size:15
Alignment explanation
Indices: 184152--184181 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
184142 GGGTGGTGAA
184152 GCGAAGCGAACCCAG
1 GCGAAGCGAACCCAG
184167 GCGAAGCGAACCCAG
1 GCGAAGCGAACCCAG
184182 AGCCGGGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (15 bp):
GCGAAGCGAACCCAG
Left flanking sequence: Indices 183652 -- 184151
AATATTCAATCTAGTAAATCTATGGATGATGTGGGACTTTAAAGCAGCTTCTTCATTCCAAGTTG
ATCGATCACATCCTAAGATTCAGAGAAGATTCCGCCTACTAAACTAAAAAGCAAGCAAGCCGTTG
GGACGGTTAGACGACCGACCGAATTCCAAGCAAGGTGTAGCGCAGTCTGGTAGCGCATCTGTTTT
GGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCTTGATCCGCTCGCAGAAACACTGAAAAGCG
AAGAGAACGGAAGTATTCTCAGTCGGGTGGGGCAACCTTGCTTTGGGGGTTGGGGCCCCACCCCA
AACGACCGACGAGTAATCCCGTAGCGGGAGGGCAGGGAGAGGGATGAAGGGCCTTCCCCTCCCCC
GGCTACCACTCCAGTACGGGTGGTGAAGCGAACCCAGGCGATTGAATTTCCCAGAGCCTGCCTGC
CAAGGGGAGGGGCCGACGCGGCAAGCAAATCTTACGGGTGGTGAA
Right flanking sequence: Indices 184182 -- 184681
AGCCGGGGCCGACGCGGCAAGCAAATCTTACGGGTGGTGAAGCGAAGCGAACCGGGATGGGCTGA
GCGGGTGGTGAAGCGAAGCGAACCCAGGCGATCGTGCCGGGCTTTGTTGGCTCCAGGGATGGGCT
GAGGACTGAGTAATAAGTAGCTTGCTTCCCACCCAGAGCCTGCCAAGGGGGAAAAGCCGACGGCC
CCTCCCCTCCCCTCCCCTCCCCTGCGAGGTGAAGGGGTGTTGTTTGCGGTGTTGCAGGCGGTTGG
TTGTTTGAAAGCAGAAGAAACTTCTGCTTCGCTGCGCATTGTTTTGTTTTGTTTTGGAGGTATTC
CCCAAAACAAAAAAAAGCAACGCAACTTCTGCCGGGTTGCGTTGTTGCAGCCAGCAAAAAACGGC
CGGGGGCCCCTGCCACCGGAAAACCTGCGCTCGGTCAAGAACTTCCAACCTTCCTTCTGCGCTGC
GCAGAAGTTCTTTTCCCGCTGCGAACAACAAACAACCAACTGCCA
Found at i:184385 original size:5 final size:5
Alignment explanation
Indices: 184375--184399 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
184365 AAGCCGACGG
184375 CCCCT CCCCT CCCCT CCCCT CCCCT
1 CCCCT CCCCT CCCCT CCCCT CCCCT
184400 GCGAGGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
CCCCT
Left flanking sequence: Indices 183875 -- 184374
TGTCACCTTGATCCGCTCGCAGAAACACTGAAAAGCGAAGAGAACGGAAGTATTCTCAGTCGGGT
GGGGCAACCTTGCTTTGGGGGTTGGGGCCCCACCCCAAACGACCGACGAGTAATCCCGTAGCGGG
AGGGCAGGGAGAGGGATGAAGGGCCTTCCCCTCCCCCGGCTACCACTCCAGTACGGGTGGTGAAG
CGAACCCAGGCGATTGAATTTCCCAGAGCCTGCCTGCCAAGGGGAGGGGCCGACGCGGCAAGCAA
ATCTTACGGGTGGTGAAGCGAAGCGAACCCAGGCGAAGCGAACCCAGAGCCGGGGCCGACGCGGC
AAGCAAATCTTACGGGTGGTGAAGCGAAGCGAACCGGGATGGGCTGAGCGGGTGGTGAAGCGAAG
CGAACCCAGGCGATCGTGCCGGGCTTTGTTGGCTCCAGGGATGGGCTGAGGACTGAGTAATAAGT
AGCTTGCTTCCCACCCAGAGCCTGCCAAGGGGGAAAAGCCGACGG
Right flanking sequence: Indices 184400 -- 184899
GCGAGGTGAAGGGGTGTTGTTTGCGGTGTTGCAGGCGGTTGGTTGTTTGAAAGCAGAAGAAACTT
CTGCTTCGCTGCGCATTGTTTTGTTTTGTTTTGGAGGTATTCCCCAAAACAAAAAAAAGCAACGC
AACTTCTGCCGGGTTGCGTTGTTGCAGCCAGCAAAAAACGGCCGGGGGCCCCTGCCACCGGAAAA
CCTGCGCTCGGTCAAGAACTTCCAACCTTCCTTCTGCGCTGCGCAGAAGTTCTTTTCCCGCTGCG
AACAACAAACAACCAACTGCCAACCCAACTGCCCCACCCCTTTTTTTTTGCCTTCGCAAGCAACT
TTTGCCCAGCCCAAAAAGAGAGTTCACCTGCACCAACCGCACTCTTTTTTTGAAATCCGTCCGGC
GCCTGCGCTTGACGCTTTCTTGCTTCGCGAAAGCAGCCTTTCAATTCGCGAAAGGCTGCTTTCGC
ACGAAGCTTGCTTTGAAGCAAGCTTCCCCTCAAATGAATGATTTA
Found at i:186759 original size:24 final size:24
Alignment explanation
Indices: 186732--186777 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
186722 TGCACTCATT
186732 GGCACTCATTCGTAGTGGCACGAA
1 GGCACTCATTCGTAGTGGCACGAA
186756 GGCACTCATTCGTAGTGGCACG
1 GGCACTCATTCGTAGTGGCACG
186778 GATGTGGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (24 bp):
GGCACTCATTCGTAGTGGCACGAA
Left flanking sequence: Indices 186232 -- 186731
AGAATGGTTGATTGGATAGGAGATCCAACAACTACGCCAGTCCCGCCACTCCCGTACTCAGAGGA
AGAGGGAAGACACTCGTTCCCCCGGGGACTGACTTGGCCGGTTCTCCAGAGTGAGTTAGTTCTCA
AGTTTTAATGTAAAAACCTCACTGTGGCCGGCCTACCGGCCCACCCAACCACACAGGCCTACCGG
CCCTTCCCCCGCGTTTCCCTCCCACCAATGAGTGCAAAAGGTTGTTTCCGTGCCAGCCTACCTTT
GTAAGCGAAACAACCTGGCACGGCAAGCCACTTGCCACACGGGAAGAAGTGGCACGGGGTAGGTG
TGAACAAAAAAAGAGTGCGGGTTGTAAAAAGCAAGTTCTTCTGCTTCTTGCAGCGGGGAAAAGCG
AAGGTTAAACTTTCCCCTCCCCCGTGCCAGCCTACCTTTGTAATTTCGTGGCGGGTTGTTGTTTC
GCTTACAAAGGTAGGCTGGCACGGAAACAACCTTTTGCACTCATT
Right flanking sequence: Indices 186778 -- 187277
GATGTGGGAATGAGTGCCTTCGAAACTTTTCGTGCAGAAGGGTTGCAAGTCTCAAGTTGGTTGCA
GAGCAGAGCTTTTTGGTTCCAAGGTGTGCAGAAGGTCCTCCCCGCAGGCAGGCAGAAGTTGCTTG
CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCAGAA
GGTTGGGCCAACCACCCAAAAAAAGTTGCCTTCCCGCACGGGGGAAAGCTGCGCTCAGATTTGAG
ATCCGCAGAAGTTCTTCGCTGCGCGAAGATGGAGGCCGCAGGGGAAAAGAACTTCTGCTCTTCCC
GGAGGGGAGGGGAGAACCCATGCGCTCGGAAAACTTCTGCTTCCCCTTCTTCGCACGGGGGAAGG
GAAAGCTGCGCAGAAGTCTCTGCAGAAGTTTTCAAACAACCAACCAAACTCCTGCCTGCTTTTTG
TTCACACCTTCACTTCTTCCCCTGCGCGAAGCAACCTTTTCCCCT
Found at i:186908 original size:4 final size:4
Alignment explanation
Indices: 186901--186968 Score: 136
Period size: 4 Copynumber: 17.0 Consensus size: 4
186891 CAGGCAGAAG
186901 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
186949 TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC
186969 AGAAGGTTGG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 64 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 186401 -- 186900
CCCACCCAACCACACAGGCCTACCGGCCCTTCCCCCGCGTTTCCCTCCCACCAATGAGTGCAAAA
GGTTGTTTCCGTGCCAGCCTACCTTTGTAAGCGAAACAACCTGGCACGGCAAGCCACTTGCCACA
CGGGAAGAAGTGGCACGGGGTAGGTGTGAACAAAAAAAGAGTGCGGGTTGTAAAAAGCAAGTTCT
TCTGCTTCTTGCAGCGGGGAAAAGCGAAGGTTAAACTTTCCCCTCCCCCGTGCCAGCCTACCTTT
GTAATTTCGTGGCGGGTTGTTGTTTCGCTTACAAAGGTAGGCTGGCACGGAAACAACCTTTTGCA
CTCATTGGCACTCATTCGTAGTGGCACGAAGGCACTCATTCGTAGTGGCACGGATGTGGGAATGA
GTGCCTTCGAAACTTTTCGTGCAGAAGGGTTGCAAGTCTCAAGTTGGTTGCAGAGCAGAGCTTTT
TGGTTCCAAGGTGTGCAGAAGGTCCTCCCCGCAGGCAGGCAGAAG
Right flanking sequence: Indices 186969 -- 187468
AGAAGGTTGGGCCAACCACCCAAAAAAAGTTGCCTTCCCGCACGGGGGAAAGCTGCGCTCAGATT
TGAGATCCGCAGAAGTTCTTCGCTGCGCGAAGATGGAGGCCGCAGGGGAAAAGAACTTCTGCTCT
TCCCGGAGGGGAGGGGAGAACCCATGCGCTCGGAAAACTTCTGCTTCCCCTTCTTCGCACGGGGG
AAGGGAAAGCTGCGCAGAAGTCTCTGCAGAAGTTTTCAAACAACCAACCAAACTCCTGCCTGCTT
TTTGTTCACACCTTCACTTCTTCCCCTGCGCGAAGCAACCTTTTCCCCTGGGTTGTTCCCGCTGC
GCACAAACAACCTTTCTTGGTCCTTGGAAAAAAAGCTCTGCTCTGCAACCAACTTTCAACCTGGG
GCCCCTGCACGCACGAAAAGTTTCGAAATTACAAAGGTAGGCACGGATGTTTAGCCACTTCTTCC
CTTCCCGTGTGGCAAGAAACTAACTTAACTTCTCGGCCACTTTTA
Found at i:195689 original size:14 final size:14
Alignment explanation
Indices: 195670--195717 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
195660 TTGGTTCCAA
195670 CTTTCTCTCTTTCG
1 CTTTCTCTCTTTCG
*
195684 CTTTCTTTAACTTT--
1 CTTTCTCT--CTTTCG
195698 CTTTCTCTCTTTCG
1 CTTTCTCTCTTTCG
195712 CTTTCT
1 CTTTCT
195718 TTAACTCGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 4 0.14
14 20 0.71
16 4 0.14
ACGTcount: A:0.04, C:0.31, G:0.04, T:0.60
Consensus pattern (14 bp):
CTTTCTCTCTTTCG
Left flanking sequence: Indices 195170 -- 195669
TGAGAATGGGGAAAGGAAAAGGAAATCCCACAGGTTGGATGGCTCGTGTGGCGATAGGACAAATC
TCATTTGAAATGGATAGTGTTAGTTTGTCTTTAGCTCAAGAAGCGGCTAGATTAGCAGCGCATAG
ACTATGTGTGTCGACCAAGTTTGTTCAGTGGTCGTGAGTGAGGTTAGGAAAAATCACCGCTTCCC
CCTCAAAGTTGGCAGGAACACTTCGCTTAGCTCCAAGGGCGGGGCCGGTAAGCCACTTTTTATAG
TGGCACGAAGGGAAGGAGGGAGAGTGGGACCTGAACTTCGCTGCGAAACCGGCACTCTCTTTTGA
AATCCGTCCAAAAAGTGTGCAGAAGAGTTGTTTGGGCAGAGATCTTCTGCTGCGCGTTCTTTTGG
AAGCAGAAGAGACTAACTTCTTGGTTCCGTTCCAAAAAGTGTGCAGAAGAATTGTTTGGGCAGAG
ATCTTCTGCTGCGCGAAGCAAAAGTTCGCACTTTCTTGGTTCCAA
Right flanking sequence: Indices 195718 -- 196217
TTAACTCGCTTTCTTTAACCTTCTTTCTTTAAAGTGTGCAGAAGAACTTCTGCAGTTCTTCTGCT
GCGCGAAGCAAAAGTTCGCACAAACAACCAACCTTTCTTGGTCCAAAAAAAAAGGTTGCAGAAGG
GCTCAGACTTTTTTGTTCACACCTTGGATCCCGACTCGTTTAACGGTTTGAACTTCTGCGGTTTT
GCCAGGGCTAAGAAGAGTGATGGGAGTTATTGTCATTCGCACATCCTTCCCTTATGAATGAGTAG
TATCTGGGGGATGGCCCTAGCCCTCCCCCAAAGAAAGGCGGGATTGAGTAACTGGAAAACTCGAT
CGTATCTTTCTCCGCTCCGAATGATGTGGGTTCAAGCCCCACTCCCGTGAACAACGTTGCCTAAA
TTCTTTGACGGAAGAAGAATCGCCGGATAGGGTGGGCCTGGGCTGGGCTGGGCTGGGCTGGGCCT
GGGCTGGGCTTGCCAGGGCTGGGCTGGGCGGGACACTTCGTGATA
Found at i:195704 original size:28 final size:28
Alignment explanation
Indices: 195670--195723 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
195660 TTGGTTCCAA
195670 CTTTCTCTCTTTCGCTTTCTTTAACTTT
1 CTTTCTCTCTTTCGCTTTCTTTAACTTT
195698 CTTTCTCTCTTTCGCTTTCTTTAACT
1 CTTTCTCTCTTTCGCTTTCTTTAACT
195724 CGCTTTCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.07, C:0.30, G:0.04, T:0.59
Consensus pattern (28 bp):
CTTTCTCTCTTTCGCTTTCTTTAACTTT
Left flanking sequence: Indices 195170 -- 195669
TGAGAATGGGGAAAGGAAAAGGAAATCCCACAGGTTGGATGGCTCGTGTGGCGATAGGACAAATC
TCATTTGAAATGGATAGTGTTAGTTTGTCTTTAGCTCAAGAAGCGGCTAGATTAGCAGCGCATAG
ACTATGTGTGTCGACCAAGTTTGTTCAGTGGTCGTGAGTGAGGTTAGGAAAAATCACCGCTTCCC
CCTCAAAGTTGGCAGGAACACTTCGCTTAGCTCCAAGGGCGGGGCCGGTAAGCCACTTTTTATAG
TGGCACGAAGGGAAGGAGGGAGAGTGGGACCTGAACTTCGCTGCGAAACCGGCACTCTCTTTTGA
AATCCGTCCAAAAAGTGTGCAGAAGAGTTGTTTGGGCAGAGATCTTCTGCTGCGCGTTCTTTTGG
AAGCAGAAGAGACTAACTTCTTGGTTCCGTTCCAAAAAGTGTGCAGAAGAATTGTTTGGGCAGAG
ATCTTCTGCTGCGCGAAGCAAAAGTTCGCACTTTCTTGGTTCCAA
Right flanking sequence: Indices 195724 -- 196223
CGCTTTCTTTAACCTTCTTTCTTTAAAGTGTGCAGAAGAACTTCTGCAGTTCTTCTGCTGCGCGA
AGCAAAAGTTCGCACAAACAACCAACCTTTCTTGGTCCAAAAAAAAAGGTTGCAGAAGGGCTCAG
ACTTTTTTGTTCACACCTTGGATCCCGACTCGTTTAACGGTTTGAACTTCTGCGGTTTTGCCAGG
GCTAAGAAGAGTGATGGGAGTTATTGTCATTCGCACATCCTTCCCTTATGAATGAGTAGTATCTG
GGGGATGGCCCTAGCCCTCCCCCAAAGAAAGGCGGGATTGAGTAACTGGAAAACTCGATCGTATC
TTTCTCCGCTCCGAATGATGTGGGTTCAAGCCCCACTCCCGTGAACAACGTTGCCTAAATTCTTT
GACGGAAGAAGAATCGCCGGATAGGGTGGGCCTGGGCTGGGCTGGGCTGGGCTGGGCCTGGGCTG
GGCTTGCCAGGGCTGGGCTGGGCGGGACACTTCGTGATAAGAGTG
Found at i:195726 original size:14 final size:14
Alignment explanation
Indices: 195681--195749 Score: 59
Period size: 14 Copynumber: 4.9 Consensus size: 14
195671 TTTCTCTCTT
195681 TCGCTTTCTTTAAC
1 TCGCTTTCTTTAAC
** * ***
195695 TTTCTTTCTCTCTT
1 TCGCTTTCTTTAAC
195709 TCGCTTTCTTTAAC
1 TCGCTTTCTTTAAC
195723 TCGCTTTCTTTAAC
1 TCGCTTTCTTTAAC
*
195737 -CTTCTTTCTTTAA
1 TC-GCTTTCTTTAA
195750 AGTGTGCAGA
Statistics
Matches: 41, Mismatches: 13, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
13 1 0.02
14 40 0.98
ACGTcount: A:0.12, C:0.28, G:0.04, T:0.57
Consensus pattern (14 bp):
TCGCTTTCTTTAAC
Left flanking sequence: Indices 195181 -- 195680
AAAGGAAAAGGAAATCCCACAGGTTGGATGGCTCGTGTGGCGATAGGACAAATCTCATTTGAAAT
GGATAGTGTTAGTTTGTCTTTAGCTCAAGAAGCGGCTAGATTAGCAGCGCATAGACTATGTGTGT
CGACCAAGTTTGTTCAGTGGTCGTGAGTGAGGTTAGGAAAAATCACCGCTTCCCCCTCAAAGTTG
GCAGGAACACTTCGCTTAGCTCCAAGGGCGGGGCCGGTAAGCCACTTTTTATAGTGGCACGAAGG
GAAGGAGGGAGAGTGGGACCTGAACTTCGCTGCGAAACCGGCACTCTCTTTTGAAATCCGTCCAA
AAAGTGTGCAGAAGAGTTGTTTGGGCAGAGATCTTCTGCTGCGCGTTCTTTTGGAAGCAGAAGAG
ACTAACTTCTTGGTTCCGTTCCAAAAAGTGTGCAGAAGAATTGTTTGGGCAGAGATCTTCTGCTG
CGCGAAGCAAAAGTTCGCACTTTCTTGGTTCCAACTTTCTCTCTT
Right flanking sequence: Indices 195750 -- 196249
AGTGTGCAGAAGAACTTCTGCAGTTCTTCTGCTGCGCGAAGCAAAAGTTCGCACAAACAACCAAC
CTTTCTTGGTCCAAAAAAAAAGGTTGCAGAAGGGCTCAGACTTTTTTGTTCACACCTTGGATCCC
GACTCGTTTAACGGTTTGAACTTCTGCGGTTTTGCCAGGGCTAAGAAGAGTGATGGGAGTTATTG
TCATTCGCACATCCTTCCCTTATGAATGAGTAGTATCTGGGGGATGGCCCTAGCCCTCCCCCAAA
GAAAGGCGGGATTGAGTAACTGGAAAACTCGATCGTATCTTTCTCCGCTCCGAATGATGTGGGTT
CAAGCCCCACTCCCGTGAACAACGTTGCCTAAATTCTTTGACGGAAGAAGAATCGCCGGATAGGG
TGGGCCTGGGCTGGGCTGGGCTGGGCTGGGCCTGGGCTGGGCTTGCCAGGGCTGGGCTGGGCGGG
ACACTTCGTGATAAGAGTGCCTGGGATTCGTGCGGGTTATCCGTG
Found at i:195729 original size:28 final size:28
Alignment explanation
Indices: 195670--195731 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
195660 TTGGTTCCAA
**
195670 CTTTCTCTCTTTCGCTTTCTTTAACTTT
1 CTTTCTCTCTTTCGCTTTCTTTAACTCG
195698 CTTTCTCTCTTTCGCTTTCTTTAACTCG
1 CTTTCTCTCTTTCGCTTTCTTTAACTCG
195726 CTTTCT
1 CTTTCT
195732 TTAACCTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.06, C:0.31, G:0.05, T:0.58
Consensus pattern (28 bp):
CTTTCTCTCTTTCGCTTTCTTTAACTCG
Left flanking sequence: Indices 195170 -- 195669
TGAGAATGGGGAAAGGAAAAGGAAATCCCACAGGTTGGATGGCTCGTGTGGCGATAGGACAAATC
TCATTTGAAATGGATAGTGTTAGTTTGTCTTTAGCTCAAGAAGCGGCTAGATTAGCAGCGCATAG
ACTATGTGTGTCGACCAAGTTTGTTCAGTGGTCGTGAGTGAGGTTAGGAAAAATCACCGCTTCCC
CCTCAAAGTTGGCAGGAACACTTCGCTTAGCTCCAAGGGCGGGGCCGGTAAGCCACTTTTTATAG
TGGCACGAAGGGAAGGAGGGAGAGTGGGACCTGAACTTCGCTGCGAAACCGGCACTCTCTTTTGA
AATCCGTCCAAAAAGTGTGCAGAAGAGTTGTTTGGGCAGAGATCTTCTGCTGCGCGTTCTTTTGG
AAGCAGAAGAGACTAACTTCTTGGTTCCGTTCCAAAAAGTGTGCAGAAGAATTGTTTGGGCAGAG
ATCTTCTGCTGCGCGAAGCAAAAGTTCGCACTTTCTTGGTTCCAA
Right flanking sequence: Indices 195732 -- 196231
TTAACCTTCTTTCTTTAAAGTGTGCAGAAGAACTTCTGCAGTTCTTCTGCTGCGCGAAGCAAAAG
TTCGCACAAACAACCAACCTTTCTTGGTCCAAAAAAAAAGGTTGCAGAAGGGCTCAGACTTTTTT
GTTCACACCTTGGATCCCGACTCGTTTAACGGTTTGAACTTCTGCGGTTTTGCCAGGGCTAAGAA
GAGTGATGGGAGTTATTGTCATTCGCACATCCTTCCCTTATGAATGAGTAGTATCTGGGGGATGG
CCCTAGCCCTCCCCCAAAGAAAGGCGGGATTGAGTAACTGGAAAACTCGATCGTATCTTTCTCCG
CTCCGAATGATGTGGGTTCAAGCCCCACTCCCGTGAACAACGTTGCCTAAATTCTTTGACGGAAG
AAGAATCGCCGGATAGGGTGGGCCTGGGCTGGGCTGGGCTGGGCTGGGCCTGGGCTGGGCTTGCC
AGGGCTGGGCTGGGCGGGACACTTCGTGATAAGAGTGCCTGGGAT
Found at i:196155 original size:5 final size:5
Alignment explanation
Indices: 196140--196201 Score: 79
Period size: 5 Copynumber: 12.0 Consensus size: 5
196130 CCGGATAGGG
* * *
196140 TGGGCC TGGGC TGGGC TGGGC TGGGC TGGGCC TGGGC TGGGC TTGCC AGGGC
1 TGGG-C TGGGC TGGGC TGGGC TGGGC TGGG-C TGGGC TGGGC TGGGC TGGGC
196192 TGGGC TGGGC
1 TGGGC TGGGC
196202 GGGACACTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
5 40 0.82
6 9 0.18
ACGTcount: A:0.02, C:0.24, G:0.55, T:0.19
Consensus pattern (5 bp):
TGGGC
Left flanking sequence: Indices 195640 -- 196139
AAGCAAAAGTTCGCACTTTCTTGGTTCCAACTTTCTCTCTTTCGCTTTCTTTAACTTTCTTTCTC
TCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCTTTCTTTAAAGTGTGCAGAAGAACTTCTG
CAGTTCTTCTGCTGCGCGAAGCAAAAGTTCGCACAAACAACCAACCTTTCTTGGTCCAAAAAAAA
AGGTTGCAGAAGGGCTCAGACTTTTTTGTTCACACCTTGGATCCCGACTCGTTTAACGGTTTGAA
CTTCTGCGGTTTTGCCAGGGCTAAGAAGAGTGATGGGAGTTATTGTCATTCGCACATCCTTCCCT
TATGAATGAGTAGTATCTGGGGGATGGCCCTAGCCCTCCCCCAAAGAAAGGCGGGATTGAGTAAC
TGGAAAACTCGATCGTATCTTTCTCCGCTCCGAATGATGTGGGTTCAAGCCCCACTCCCGTGAAC
AACGTTGCCTAAATTCTTTGACGGAAGAAGAATCGCCGGATAGGG
Right flanking sequence: Indices 196202 -- 196701
GGGACACTTCGTGATAAGAGTGCCTGGGATTCGTGCGGGTTATCCGTGCCAGCCTACCTTTGTAA
GCGAATGAGTGCGCAGGGGCAGGTTGTTGCTATTCGTGCCTCAAAGCTATTCGGGCCAATGAGTG
CGCAGGGGAAAAGGTTGTTGCTATCCGTGCCTACCTTTGTAAGTAATGGCAAGAATGAGTGCAAA
AGTCTCATCCGTGCGGTGGCAACAAACACCGCAGAAGTTCCTCGGAGAACCCCTGCGCTCGGTAA
AGGTAAGACCTTTATGCCGGCCGAAAAGTTTCGCTTACAAAGGGCCAAGAAGGGGGACCGGTTGG
TTGGCTGGTTCTTCGCGTAGCGAAGCATAAGTTCCAACCAAGGGGAAAGGGTTTACCTTCTGCCT
CCTTCCGGGTTGGGAACCAGAAGGTAAACCTTTTACCCTTGGTTGCAGGAGGTTGTTTGGAAGTT
CTTGACCGAGCGCAGGTCTTCCCCCAGAGGTGGCAGGGTGTTCTC
Found at i:196176 original size:26 final size:26
Alignment explanation
Indices: 196136--196201 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
196126 ATCGCCGGAT
*
196136 AGGG-TGGGCCTGGGCTGGGCTGGGC
1 AGGGCTGGGCCTGGGCTGGGCTGGCC
* *
196161 TGGGCTGGGCCTGGGCTGGGCTTGCC
1 AGGGCTGGGCCTGGGCTGGGCTGGCC
196187 AGGGCTGGG-CTGGGC
1 AGGGCTGGGCCTGGGC
196202 GGGACACTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
25 9 0.25
26 27 0.75
ACGTcount: A:0.03, C:0.23, G:0.56, T:0.18
Consensus pattern (26 bp):
AGGGCTGGGCCTGGGCTGGGCTGGCC
Left flanking sequence: Indices 195636 -- 196135
CGCGAAGCAAAAGTTCGCACTTTCTTGGTTCCAACTTTCTCTCTTTCGCTTTCTTTAACTTTCTT
TCTCTCTTTCGCTTTCTTTAACTCGCTTTCTTTAACCTTCTTTCTTTAAAGTGTGCAGAAGAACT
TCTGCAGTTCTTCTGCTGCGCGAAGCAAAAGTTCGCACAAACAACCAACCTTTCTTGGTCCAAAA
AAAAAGGTTGCAGAAGGGCTCAGACTTTTTTGTTCACACCTTGGATCCCGACTCGTTTAACGGTT
TGAACTTCTGCGGTTTTGCCAGGGCTAAGAAGAGTGATGGGAGTTATTGTCATTCGCACATCCTT
CCCTTATGAATGAGTAGTATCTGGGGGATGGCCCTAGCCCTCCCCCAAAGAAAGGCGGGATTGAG
TAACTGGAAAACTCGATCGTATCTTTCTCCGCTCCGAATGATGTGGGTTCAAGCCCCACTCCCGT
GAACAACGTTGCCTAAATTCTTTGACGGAAGAAGAATCGCCGGAT
Right flanking sequence: Indices 196202 -- 196701
GGGACACTTCGTGATAAGAGTGCCTGGGATTCGTGCGGGTTATCCGTGCCAGCCTACCTTTGTAA
GCGAATGAGTGCGCAGGGGCAGGTTGTTGCTATTCGTGCCTCAAAGCTATTCGGGCCAATGAGTG
CGCAGGGGAAAAGGTTGTTGCTATCCGTGCCTACCTTTGTAAGTAATGGCAAGAATGAGTGCAAA
AGTCTCATCCGTGCGGTGGCAACAAACACCGCAGAAGTTCCTCGGAGAACCCCTGCGCTCGGTAA
AGGTAAGACCTTTATGCCGGCCGAAAAGTTTCGCTTACAAAGGGCCAAGAAGGGGGACCGGTTGG
TTGGCTGGTTCTTCGCGTAGCGAAGCATAAGTTCCAACCAAGGGGAAAGGGTTTACCTTCTGCCT
CCTTCCGGGTTGGGAACCAGAAGGTAAACCTTTTACCCTTGGTTGCAGGAGGTTGTTTGGAAGTT
CTTGACCGAGCGCAGGTCTTCCCCCAGAGGTGGCAGGGTGTTCTC
Found at i:197901 original size:4 final size:4
Alignment explanation
Indices: 197892--197953 Score: 52
Period size: 4 Copynumber: 14.0 Consensus size: 4
197882 CTCAGAACTC
* *
197892 TCTT TCTT TCTC TCTT TCGCTT TCTT TAACTT TCTT TCTC TCTT TCGCTT
1 TCTT TCTT TCTT TCTT T--CTT TCTT T--CTT TCTT TCTT TCTT T--CTT
197942 TCTT TCTT TCTT
1 TCTT TCTT TCTT
197954 GATTTATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
4 36 0.75
6 12 0.25
ACGTcount: A:0.03, C:0.29, G:0.03, T:0.65
Consensus pattern (4 bp):
TCTT
Left flanking sequence: Indices 197392 -- 197891
GTTCAAACAACCAACCCAACCCAACTTTTAACCCAACCAAACCCCGCAGAAGTTGCACTCTTTTT
TTGAAATCCGTCGCAGAAGTTCTTCGCTGCGCGAAGATTCAACCGCTTCCCCCGCAGGCAGAAGG
GAAACTTCTGCTTAGCTGCGCGAAGCAGAAGTTTCACGCAAGCCAGCCTTCTTGGTCCAACGCAG
GCAGAAGTTTCTGCGCGAAGCAACCTTTTCCCGCCAACCCTTCTTGGTCCTTTGTAATTTCGTGG
CAAAAAGAAGGTTGTTAGTTGGAACAAAAAGTGTGCAGAAGTTTGTTTTCGCTGCGCTCATAACT
CTCTTGATTTATTTTGGGTCCAACTCTCTTGCTTGCTTTGCTTGCTTGCTTGCTTTTTGGAAGCA
GAAGAGACTTCTGCTCTTCCCCTTCCCCTGCGCTCAGAACTCTCTTGATTTTGGGTCCAACTTTC
TTGCTTGCTTTAAAGTGTGAACCCCTTCCCCTGCGCTCAGAACTC
Right flanking sequence: Indices 197954 -- 198453
GATTTATTTTGGGTCCAACTTTCTTGCTTGCTTGCTTGCTTTTTGGAAGCAGAAGAGACTTCTGC
TTTTCCCCGCTGCGCGAAGATTCTTTTGTTCACACCTGAACTTATTCCCCTGCGCTCAGATTCAA
CACGAAGGTTTGCCAACTTTTAAGCAGGCAGAAGTCCTACGCGAAGAACCAGCCAACCAACCGGC
CCCCCTTCTTGGCCCTTGGAACCAACTTTCAACAACCCTTCTGCACGAAAAGTTTCGCTTACAAA
GGTAGGCTGGCACGGGGGAGGGGAGGGGAAAGAACCTTCTGCAAGCAAGCAACAAACAACCTTCT
GCCGAAAAGTTTCGAAGTTACAAAGGTAGGCCAGGCCAGGCCCCTTCTGCCGAAAAGTTTCGCAA
GGCACTCATTCGAAATTACAAAGGTAGGCACGGATAACAACCTTTAAGGCACTCATTCCTTTTAG
GACAGATTTCAACAACCAACCTTTGTGCCGGTTTCGCAGCGAAGC
Found at i:197925 original size:28 final size:26
Alignment explanation
Indices: 197892--197953 Score: 106
Period size: 28 Copynumber: 2.3 Consensus size: 26
197882 CTCAGAACTC
197892 TCTTTCTTTCTCTCTTTCGCTTTCTT
1 TCTTTCTTTCTCTCTTTCGCTTTCTT
197918 TAACTTTCTTTCTCTCTTTCGCTTTCTT
1 T--CTTTCTTTCTCTCTTTCGCTTTCTT
197946 TCTTTCTT
1 TCTTTCTT
197954 GATTTATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
26 8 0.24
28 26 0.76
ACGTcount: A:0.03, C:0.29, G:0.03, T:0.65
Consensus pattern (26 bp):
TCTTTCTTTCTCTCTTTCGCTTTCTT
Left flanking sequence: Indices 197392 -- 197891
GTTCAAACAACCAACCCAACCCAACTTTTAACCCAACCAAACCCCGCAGAAGTTGCACTCTTTTT
TTGAAATCCGTCGCAGAAGTTCTTCGCTGCGCGAAGATTCAACCGCTTCCCCCGCAGGCAGAAGG
GAAACTTCTGCTTAGCTGCGCGAAGCAGAAGTTTCACGCAAGCCAGCCTTCTTGGTCCAACGCAG
GCAGAAGTTTCTGCGCGAAGCAACCTTTTCCCGCCAACCCTTCTTGGTCCTTTGTAATTTCGTGG
CAAAAAGAAGGTTGTTAGTTGGAACAAAAAGTGTGCAGAAGTTTGTTTTCGCTGCGCTCATAACT
CTCTTGATTTATTTTGGGTCCAACTCTCTTGCTTGCTTTGCTTGCTTGCTTGCTTTTTGGAAGCA
GAAGAGACTTCTGCTCTTCCCCTTCCCCTGCGCTCAGAACTCTCTTGATTTTGGGTCCAACTTTC
TTGCTTGCTTTAAAGTGTGAACCCCTTCCCCTGCGCTCAGAACTC
Right flanking sequence: Indices 197954 -- 198453
GATTTATTTTGGGTCCAACTTTCTTGCTTGCTTGCTTGCTTTTTGGAAGCAGAAGAGACTTCTGC
TTTTCCCCGCTGCGCGAAGATTCTTTTGTTCACACCTGAACTTATTCCCCTGCGCTCAGATTCAA
CACGAAGGTTTGCCAACTTTTAAGCAGGCAGAAGTCCTACGCGAAGAACCAGCCAACCAACCGGC
CCCCCTTCTTGGCCCTTGGAACCAACTTTCAACAACCCTTCTGCACGAAAAGTTTCGCTTACAAA
GGTAGGCTGGCACGGGGGAGGGGAGGGGAAAGAACCTTCTGCAAGCAAGCAACAAACAACCTTCT
GCCGAAAAGTTTCGAAGTTACAAAGGTAGGCCAGGCCAGGCCCCTTCTGCCGAAAAGTTTCGCAA
GGCACTCATTCGAAATTACAAAGGTAGGCACGGATAACAACCTTTAAGGCACTCATTCCTTTTAG
GACAGATTTCAACAACCAACCTTTGTGCCGGTTTCGCAGCGAAGC
Found at i:197935 original size:18 final size:18
Alignment explanation
Indices: 197914--197953 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
197904 TCTTTCGCTT
197914 TCTTTAACTTTCTTTCTC
1 TCTTTAACTTTCTTTCTC
** *
197932 TCTTTCGCTTTCTTTCTT
1 TCTTTAACTTTCTTTCTC
197950 TCTT
1 TCTT
197954 GATTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.05, C:0.28, G:0.03, T:0.65
Consensus pattern (18 bp):
TCTTTAACTTTCTTTCTC
Left flanking sequence: Indices 197414 -- 197913
AACTTTTAACCCAACCAAACCCCGCAGAAGTTGCACTCTTTTTTTGAAATCCGTCGCAGAAGTTC
TTCGCTGCGCGAAGATTCAACCGCTTCCCCCGCAGGCAGAAGGGAAACTTCTGCTTAGCTGCGCG
AAGCAGAAGTTTCACGCAAGCCAGCCTTCTTGGTCCAACGCAGGCAGAAGTTTCTGCGCGAAGCA
ACCTTTTCCCGCCAACCCTTCTTGGTCCTTTGTAATTTCGTGGCAAAAAGAAGGTTGTTAGTTGG
AACAAAAAGTGTGCAGAAGTTTGTTTTCGCTGCGCTCATAACTCTCTTGATTTATTTTGGGTCCA
ACTCTCTTGCTTGCTTTGCTTGCTTGCTTGCTTTTTGGAAGCAGAAGAGACTTCTGCTCTTCCCC
TTCCCCTGCGCTCAGAACTCTCTTGATTTTGGGTCCAACTTTCTTGCTTGCTTTAAAGTGTGAAC
CCCTTCCCCTGCGCTCAGAACTCTCTTTCTTTCTCTCTTTCGCTT
Right flanking sequence: Indices 197954 -- 198453
GATTTATTTTGGGTCCAACTTTCTTGCTTGCTTGCTTGCTTTTTGGAAGCAGAAGAGACTTCTGC
TTTTCCCCGCTGCGCGAAGATTCTTTTGTTCACACCTGAACTTATTCCCCTGCGCTCAGATTCAA
CACGAAGGTTTGCCAACTTTTAAGCAGGCAGAAGTCCTACGCGAAGAACCAGCCAACCAACCGGC
CCCCCTTCTTGGCCCTTGGAACCAACTTTCAACAACCCTTCTGCACGAAAAGTTTCGCTTACAAA
GGTAGGCTGGCACGGGGGAGGGGAGGGGAAAGAACCTTCTGCAAGCAAGCAACAAACAACCTTCT
GCCGAAAAGTTTCGAAGTTACAAAGGTAGGCCAGGCCAGGCCCCTTCTGCCGAAAAGTTTCGCAA
GGCACTCATTCGAAATTACAAAGGTAGGCACGGATAACAACCTTTAAGGCACTCATTCCTTTTAG
GACAGATTTCAACAACCAACCTTTGTGCCGGTTTCGCAGCGAAGC
Found at i:200080 original size:18 final size:19
Alignment explanation
Indices: 200057--200098 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
200047 GATACGGTGT
*
200057 CCGTCCTCGTCCGT-AAAA
1 CCGTCCCCGTCCGTCAAAA
200075 CCGTCCCCGTCCGTCAAAA
1 CCGTCCCCGTCCGTCAAAA
200094 -CGTCC
1 CCGTCC
200099 GGAAAACCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.19, C:0.45, G:0.17, T:0.19
Consensus pattern (19 bp):
CCGTCCCCGTCCGTCAAAA
Left flanking sequence: Indices 199557 -- 200056
CTTCTGGAGGTCACACCTTCTTGGCCCTTGGATCCCGACTTTTTGGTTGGTAAAGATTTAGTTTC
GGACGGGGCGCTACAAGAAGCGCTTTCAATCCTGGCGCTCCGCGCTTTCTCTGTCCACTCACCCG
TAAGGCCATCCACTCGACAAATACCCCGGCTTTCACGGGGGAAAAGGACGGTTTAATCCCCGATT
GATTTCGTAAGGCCATCCACTCTTTCCCCGGCCATCCACCCACCCCCTTCCTTTTAATTTAATTG
GCCATCCACTCGACCGTTTGCCGTTTGCCCTGGCAGGCCATCCACTCGCGGCCTGGCTCTTTTTA
AAACCGACCGTCAATCCCTACAAGCCGGCCTGCCGCGCCGTTTTTGCCATCCACTCTAAAGTTAA
ACCCCGGGACACTCTACCGCTTCCCCCGGGCATCCACTCTCCCTTCTTTCAAAGTAATATTAGAG
GGGAGAGGGTACGGGTCCACGTACGGGCTAGCCCCGATACGGTGT
Right flanking sequence: Indices 200099 -- 200598
GGAAAACCCAAGCCCCCGTCCGTAAAACCGTCCTTCGGGTATCGCCCGTTGGATGCCGCAGGTTA
GCGGTTCTACGAGGCCGTGGGGGTTCCATCACATCAAAGTTACCTCTTCCCCCGGGACGGAACTC
ACTCTTAGGCTGGCCTCTTTCTTGGGTGCCAGTTACTGATTGCTCTCGTCTGATGTCCTTAGCTA
TGCCCACTCGGCTAGGCGGGCGACGGACACTTTAAAAAAAAAGGTTGGTTTGCCAGGTGATAGGG
ACAGAAGGCACACCTAACTACGCTCAGTGAGTCGTTGGCCCTAATGGCAAGGAGCACTCCTGATC
CCATCTTCTCGGTCTCCTGCTATCCCGCTGCTTTTATTTATTATTGCCGGGCACCAACCAAGAGC
GGTTACTGGCCTTCCCTCCTCAGTGAGCTGTCTATAAGCATGTGGTGCCGGCTTTCCCATTATTA
GCCTACCAACTTGGCGTGCGAAATCCCTACTGAATGACTGGCGTA
Found at i:201971 original size:5 final size:5
Alignment explanation
Indices: 201961--201991 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
201951 GTGCCGGCTT
201961 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
201992 CAGGGAAGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 201461 -- 201960
GAAAAGACGTCAAGACTCGTTATACCTTGGTAATCCGTTACGACGGGGATCCGAGTGTCTGGGCT
ATGATTCAGGCTGTGGAGCCGGGGGCGAGTGTCTGTACTGCGTGCGGATCCTCCGACTTTGTAAC
AAGTGGGCTTGCTTGCTTGCAAAAGGTTGGTTGGTTGTTGGATCTCATGCAAATTGACGCAGCAA
GAATAGGCCCGTAAGTAGCCATAACAAGATCACTGTGTCGGAATGGTCACGAAGGGTTTTAGGGA
ATGGAACCTGCTTTCCGCCGGTAGGCAATTCCTCAAACCAACCCGGGAAAGCGGGATAAAGCTAG
CGCTTTAGGGATCCCAGAAACGTACTATGGGCTTGCTTTCGCCAGCCAATTTGTTTAACTACTAC
CTCCATCGAATTCGTTTCACTACAACTTCTGGTGCCAGAAGCAGCTACATAATAATAAAGCTGCT
GGGTGGTTATCGCAGACAGCAGATTCTAGACTTAAGTGCCGGCTT
Right flanking sequence: Indices 201992 -- 202491
CAGGGAAGGTAATAATGCGCGGGAGGATGCGGTGGCTTACGGCTCCCTCTCCTTTTCGAAGCGAA
GCGAAGGGATCCAAGGAGTGGATTAAGGGAGAGTGGTTCCCCCGGGGGGACGAGTGGATGGCCTT
ACGGTAGAGTGTCCCGGCCGGGATGGATCCTCGTGCCTTCGCTTCGCTGCGCTCAGCCGCCCTTG
CTTGCTGCTTGTGAGAATTAATTCTCTAAGTGGATGGCAGGCACTGGGTACCGGGAGAAGGCGTG
TCCCCGGGGCGGGCCCCTGTCCCGGGGCCGGGGAAGCACCCCTGCCGTGTCCTTCGGTTTTACCC
GGGCCTCTCCGGCCCCGGGGATCAAGGGGTAACTTCTGCTTGCTTGCTTGCCACTTTTTATAGTG
GCACTACCGTGCCAGGGCCGTTTTCCTCTAAGGATAATCAAGGGGGAAGCACCCCTGCCGTGTCC
TTCGGGCCCTCTGTGTGATTTCCCAATTATTGGTCAATCACGTAT
Found at i:203369 original size:13 final size:12
Alignment explanation
Indices: 203345--203383 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
203335 CTTCTGCTTT
203345 CAAACAACCAAC
1 CAAACAACCAAC
203357 CAAACACACCAAC
1 CAAACA-ACCAAC
*
203370 CAACCAA-CAAC
1 CAAACAACCAAC
203381 CAA
1 CAA
203384 CCTTCTACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 7 0.28
12 7 0.28
13 11 0.44
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (12 bp):
CAAACAACCAAC
Left flanking sequence: Indices 202845 -- 203344
ACTAATCGCGCGCGCGCGCTCGCCGGGACTCGGACTGCTTTTGAGAGTGCCACTCGGTCTTCTCG
AATGGGGCCCGAACTGAATGATAGGTACCTGTTGACCGGACCTTCACTAAGGTTCACACGAAAAA
AAGAGTGCCAAACTCTACTCTTTTGCGCAGAAACTTCTGCTTCCCAAGAAGTTCCCTCTTATATT
ACTCTGAAGGTTGGTTGTTTGTGGGGAGAACCCCTGCGCTCGGTCAAGGTAATACAACCCTACCC
AAAATAAAGTTCGAAAGAGAGTTCTGAGCGCAGGGGTTCCCACTTCAGAGGAATATAAGAGAGGG
GTAACTTCTGCGAACTTATGCGGGGGGCGCGCAGCGAAGCAGAAGTCTCTTCTGCTTCCAAAGAG
TGCCGTGCCAAAATAAGTTTTCGCAGCGAAGCGAAGCGAAGGGCTTCCAAAGAGTGCCGTGCCAA
AAGTAGCAGAAGTTTTCGCAGCGGAGCAGAAGTCTCTTCTGCTTT
Right flanking sequence: Indices 203384 -- 203883
CCTTCTACGTCCAAAAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAA
GCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCTTCAGTGCAGCCAGTCCGGCAGAGCCG
GTCGTATAATAAAGATCTTCTATAGATTACTAGAGGATTGATTTCCTGCAAAGCTTTCTACAGGA
AAGCTTTAAGTAATATCTATGGGCTCGAGTGATTCACCGAAGCGACGAGAATCAATCTACAGGGT
GGGTAGTAAAACGCTTTGCTTTTAGTTTCACAGGCCGATTTGGTGACAGGATAAATCTCATTCAG
AAGTAAGAGTGTGAGTTTGTCTTGAGCTTAATAACAATAAGAGTCAATTTTAAAGGGAGCAGAAG
TGGAAGCAAAGGCCGAAGGCTCAGGTTCAACGCACGACGACCTCTTCCCCCACGGATGAATTTAG
GAACGAAGACTATTATGGAGGAATCGAGAATTCGTGGTTTTCGGA
Found at i:203371 original size:17 final size:15
Alignment explanation
Indices: 203349--203385 Score: 56
Period size: 17 Copynumber: 2.3 Consensus size: 15
203339 TGCTTTCAAA
203349 CAACCAACCAAACACAC
1 CAACCAACC-AACA-AC
203366 CAACCAACCAACAAC
1 CAACCAACCAACAAC
203381 CAACC
1 CAACC
203386 TTCTACGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 7 0.35
16 4 0.20
17 9 0.45
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (15 bp):
CAACCAACCAACAAC
Left flanking sequence: Indices 202849 -- 203348
ATCGCGCGCGCGCGCTCGCCGGGACTCGGACTGCTTTTGAGAGTGCCACTCGGTCTTCTCGAATG
GGGCCCGAACTGAATGATAGGTACCTGTTGACCGGACCTTCACTAAGGTTCACACGAAAAAAAGA
GTGCCAAACTCTACTCTTTTGCGCAGAAACTTCTGCTTCCCAAGAAGTTCCCTCTTATATTACTC
TGAAGGTTGGTTGTTTGTGGGGAGAACCCCTGCGCTCGGTCAAGGTAATACAACCCTACCCAAAA
TAAAGTTCGAAAGAGAGTTCTGAGCGCAGGGGTTCCCACTTCAGAGGAATATAAGAGAGGGGTAA
CTTCTGCGAACTTATGCGGGGGGCGCGCAGCGAAGCAGAAGTCTCTTCTGCTTCCAAAGAGTGCC
GTGCCAAAATAAGTTTTCGCAGCGAAGCGAAGCGAAGGGCTTCCAAAGAGTGCCGTGCCAAAAGT
AGCAGAAGTTTTCGCAGCGGAGCAGAAGTCTCTTCTGCTTTCAAA
Right flanking sequence: Indices 203386 -- 203885
TTCTACGTCCAAAAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGC
AAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCTTCAGTGCAGCCAGTCCGGCAGAGCCGGT
CGTATAATAAAGATCTTCTATAGATTACTAGAGGATTGATTTCCTGCAAAGCTTTCTACAGGAAA
GCTTTAAGTAATATCTATGGGCTCGAGTGATTCACCGAAGCGACGAGAATCAATCTACAGGGTGG
GTAGTAAAACGCTTTGCTTTTAGTTTCACAGGCCGATTTGGTGACAGGATAAATCTCATTCAGAA
GTAAGAGTGTGAGTTTGTCTTGAGCTTAATAACAATAAGAGTCAATTTTAAAGGGAGCAGAAGTG
GAAGCAAAGGCCGAAGGCTCAGGTTCAACGCACGACGACCTCTTCCCCCACGGATGAATTTAGGA
ACGAAGACTATTATGGAGGAATCGAGAATTCGTGGTTTTCGGATC
Found at i:203408 original size:4 final size:4
Alignment explanation
Indices: 203399--203486 Score: 176
Period size: 4 Copynumber: 22.0 Consensus size: 4
203389 TACGTCCAAA
203399 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
203447 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
203487 TTCAGTGCAG
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 84 1.00
ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00
Consensus pattern (4 bp):
AAGC
Left flanking sequence: Indices 202899 -- 203398
CGGTCTTCTCGAATGGGGCCCGAACTGAATGATAGGTACCTGTTGACCGGACCTTCACTAAGGTT
CACACGAAAAAAAGAGTGCCAAACTCTACTCTTTTGCGCAGAAACTTCTGCTTCCCAAGAAGTTC
CCTCTTATATTACTCTGAAGGTTGGTTGTTTGTGGGGAGAACCCCTGCGCTCGGTCAAGGTAATA
CAACCCTACCCAAAATAAAGTTCGAAAGAGAGTTCTGAGCGCAGGGGTTCCCACTTCAGAGGAAT
ATAAGAGAGGGGTAACTTCTGCGAACTTATGCGGGGGGCGCGCAGCGAAGCAGAAGTCTCTTCTG
CTTCCAAAGAGTGCCGTGCCAAAATAAGTTTTCGCAGCGAAGCGAAGCGAAGGGCTTCCAAAGAG
TGCCGTGCCAAAAGTAGCAGAAGTTTTCGCAGCGGAGCAGAAGTCTCTTCTGCTTTCAAACAACC
AACCAAACACACCAACCAACCAACAACCAACCTTCTACGTCCAAA
Right flanking sequence: Indices 203487 -- 203986
TTCAGTGCAGCCAGTCCGGCAGAGCCGGTCGTATAATAAAGATCTTCTATAGATTACTAGAGGAT
TGATTTCCTGCAAAGCTTTCTACAGGAAAGCTTTAAGTAATATCTATGGGCTCGAGTGATTCACC
GAAGCGACGAGAATCAATCTACAGGGTGGGTAGTAAAACGCTTTGCTTTTAGTTTCACAGGCCGA
TTTGGTGACAGGATAAATCTCATTCAGAAGTAAGAGTGTGAGTTTGTCTTGAGCTTAATAACAAT
AAGAGTCAATTTTAAAGGGAGCAGAAGTGGAAGCAAAGGCCGAAGGCTCAGGTTCAACGCACGAC
GACCTCTTCCCCCACGGATGAATTTAGGAACGAAGACTATTATGGAGGAATCGAGAATTCGTGGT
TTTCGGATCTTGATTCGCTTTAGTTTGACATGGCTTTCGCGCTATTGGTTTCCGGAAGAATTCAT
CCTTTCATTGGCCAAACCCTTTATTACTTCGCCTTATCCAGACTC
Found at i:208232 original size:5 final size:5
Alignment explanation
Indices: 208222--208271 Score: 73
Period size: 5 Copynumber: 10.0 Consensus size: 5
208212 TGGTAACTCT
* * *
208222 CTGGA CTGGA CTGGG CTGGG CTGGA CTGGG CTGGA CTGGA CTGGA CTGGA
1 CTGGA CTGGA CTGGA CTGGA CTGGA CTGGA CTGGA CTGGA CTGGA CTGGA
208272 GAGATGTACT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.14, C:0.20, G:0.46, T:0.20
Consensus pattern (5 bp):
CTGGA
Left flanking sequence: Indices 207722 -- 208221
CCAAGGGTGTTGGTTTCTCTTGATTGACATCCTAGTAAATGACTGATAATAGGTCCGGCTTTCTG
AGTCGGAACTAGAACGAAAGAATCTGAAGACTGAAGCCACAACCCGTAAATGAATGGTGTAAGGG
CTTAAAGCTGATACTATCATATAGTCTGTCTTGCCCTTAAAGATTAGGTTGGTCTGTTCCGGTCT
GATTATGGACATTCCTTCTAGTTTGTGACTGGACTGATAATCCCGCCCGCCTTTGGCGTCTTTTT
GAGTCCCGACTAGAACCGTAGGATAATAAACTGGGCAAGCAAGCCCTATTATCACGACAAAGTCA
CTCTAACCGTAAAGAATCTCCTTATTCAGCCATAAACCAGAAGTTCATGATTCCCTGTATTCTAG
CGGCTGATCATCTCTGTCTGGGACCCCAAAAAAAGACTGAGTGTTGGGTTTTCCCCCACCACTGA
ATGAGGGGCGGTCTGCGATTTCCTCCGGATTAACATGGTAACTCT
Right flanking sequence: Indices 208272 -- 208771
GAGATGTACTGGCTATGATTTGGTAAGTTTCTCGGTTGAGTGTCCCCGAGGGGTTCAACCTGACT
CTGGTCTGAAGGGGAATTAATATGCTCTGTGCATTGGAGTATAACTTTTCCTCCATGTTGAAGGA
TCGGTGTCCCTGTTTTCACGGGTTCCTATCTGGGACCGCCTAGTTGGAATAGGCGGTCGGAGTGA
GGATCTGTGGCAGATTGACCGATAGGGGATCCAAGTTGCCGGGGTAGCGTATTGTGTCTGTGAAC
CCCCTACCCTCTGCCTGGCACTAAAAGCTGACTATCTAATAGTCTGTTGGTTGTTCTCCAATCCT
TGGTTGGCTACGAGCTTTCGGGTAAGTATCGGAGTTTAATGTCCCGTGAGGAGCAACCGAACGTA
TCGATGGTTCAAGCCCGGGTGCACTAATAATTGACAAGTACTAGGTATGTGCAGAAGGGTGTTCT
CCGAGCGCAGGGGAAGAGGAACACCCTTCTGGGGAGTGAATTATT
Found at i:208245 original size:15 final size:15
Alignment explanation
Indices: 208222--208271 Score: 82
Period size: 15 Copynumber: 3.3 Consensus size: 15
208212 TGGTAACTCT
208222 CTGGACTGGACTGGG
1 CTGGACTGGACTGGG
*
208237 CTGGGCTGGACTGGG
1 CTGGACTGGACTGGG
*
208252 CTGGACTGGACTGGA
1 CTGGACTGGACTGGG
208267 CTGGA
1 CTGGA
208272 GAGATGTACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.14, C:0.20, G:0.46, T:0.20
Consensus pattern (15 bp):
CTGGACTGGACTGGG
Left flanking sequence: Indices 207722 -- 208221
CCAAGGGTGTTGGTTTCTCTTGATTGACATCCTAGTAAATGACTGATAATAGGTCCGGCTTTCTG
AGTCGGAACTAGAACGAAAGAATCTGAAGACTGAAGCCACAACCCGTAAATGAATGGTGTAAGGG
CTTAAAGCTGATACTATCATATAGTCTGTCTTGCCCTTAAAGATTAGGTTGGTCTGTTCCGGTCT
GATTATGGACATTCCTTCTAGTTTGTGACTGGACTGATAATCCCGCCCGCCTTTGGCGTCTTTTT
GAGTCCCGACTAGAACCGTAGGATAATAAACTGGGCAAGCAAGCCCTATTATCACGACAAAGTCA
CTCTAACCGTAAAGAATCTCCTTATTCAGCCATAAACCAGAAGTTCATGATTCCCTGTATTCTAG
CGGCTGATCATCTCTGTCTGGGACCCCAAAAAAAGACTGAGTGTTGGGTTTTCCCCCACCACTGA
ATGAGGGGCGGTCTGCGATTTCCTCCGGATTAACATGGTAACTCT
Right flanking sequence: Indices 208272 -- 208771
GAGATGTACTGGCTATGATTTGGTAAGTTTCTCGGTTGAGTGTCCCCGAGGGGTTCAACCTGACT
CTGGTCTGAAGGGGAATTAATATGCTCTGTGCATTGGAGTATAACTTTTCCTCCATGTTGAAGGA
TCGGTGTCCCTGTTTTCACGGGTTCCTATCTGGGACCGCCTAGTTGGAATAGGCGGTCGGAGTGA
GGATCTGTGGCAGATTGACCGATAGGGGATCCAAGTTGCCGGGGTAGCGTATTGTGTCTGTGAAC
CCCCTACCCTCTGCCTGGCACTAAAAGCTGACTATCTAATAGTCTGTTGGTTGTTCTCCAATCCT
TGGTTGGCTACGAGCTTTCGGGTAAGTATCGGAGTTTAATGTCCCGTGAGGAGCAACCGAACGTA
TCGATGGTTCAAGCCCGGGTGCACTAATAATTGACAAGTACTAGGTATGTGCAGAAGGGTGTTCT
CCGAGCGCAGGGGAAGAGGAACACCCTTCTGGGGAGTGAATTATT
Found at i:209821 original size:5 final size:5
Alignment explanation
Indices: 209811--209835 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
209801 CCCCCGCACG
209811 GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA
209836 AAGCTGCGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 209311 -- 209810
CCCCCGAGGTGCTGTCTATGCTGGAGTAAAGAGCGGGTTGCCTGCCTCTCTCCTTGGATTCCCGC
CCCGGTAGCAACCGAACGAAGCGTGGTGTGTGGGACCCTTGGTGGTTGATGACCATGATCTCCCT
CCGTGGGTGGCCCGGGGAACCCCCAAGGTAGGAGTGGGCCCAACCCGGGCCAGGAAGGAAGGGGA
AGTCTCTCTCTGGGATAGTTTGGGTGGCCCCCCGGCCTGTGATGTCCTGTTCCTCTTTAGCTTCT
CGGTGGTCCGATTTATTGGTTGTAAATGCACCATTCAAAAGCAGAAGTTTTCGCTGCGAAGCAGA
AGTCTCTTCTGCTTTTGAAATCCGTCAAGAACACCACACAAAGTGTGCAGAAATTACTGGGGGAA
GGGCCTTCCCCCGCTGCGCTCAGAAAGCAAGCAAGCGGGAACTGGCAGGCACTTAAAGCGTGCGT
GCGTGTTGAGATCCGTCAAACCGGTTCTCCTTCTTCCCCCGCACG
Right flanking sequence: Indices 209836 -- 210335
AAGCTGCGCTCAGATTCAAACAACCTTCTGCACACCTTGGATCCCACATCCCAGCTTTTTGGAAT
AGCGAGTTAACTTGTCGTATGTGTTGTCTACGCTGGAGTAAAGGTGTGCAGAAGGTTGTTTGAAT
CTGAGCGCAGGGGAAGAAGTGAAGGTTCACAACAAAAAAAAAAGAGCTGCGCAGAACTTCTGCTG
CCAAACAATTCTTCTGCACACTTTAAAGCAAGCAAGTATTCCACTCAAAAAGGACCAAGTTTTAA
GGTGTGAACTTCTGCTTCGCGTAGCGAAGTGTTTAAAGTGTGCAGAAGAGGCTTCTGCTTCGCGC
AGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAATGCAAGAGAGTTGGAACTCAAATT
TAAAGTGTGCAGAAGAGGCTTCTGCTTCGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCA
CACTTTAAAGAAAGTTGGAACCAAGAAATCAGGTATTACCTTTAC
Found at i:212414 original size:5 final size:5
Alignment explanation
Indices: 212404--212482 Score: 122
Period size: 5 Copynumber: 15.6 Consensus size: 5
212394 TTTCCCCTGC
***
212404 GGGAA GGGAA GGGAA GTTCCA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
1 GGGAA GGGAA GGGAA G-GGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
212455 GGGAA GGGAA GGGAA GGGAA GGGAA GGG
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGG
212483 GTGGAACTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
5 65 0.97
6 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.58, T:0.03
Consensus pattern (5 bp):
GGGAA
Left flanking sequence: Indices 211904 -- 212403
CAAGGAGTCAGTCCCGGCTTCTGATAACCGGGTGGGAGAGTGGTTCCCCCGGGAGGGGGGCTGGG
TATCACGGGGATCCGAGTTCGGTATCCAAGGACCAAGAAGGTTGGTTTCTTCGCGCAGCGAAGTG
AAGGACCGTTTAAGTAGGTCGAGTGGACTTTGCCAGGCCTTCCCGAGTGTCTTCCCTCTTCCTTA
AACTCTTCCCCTGCGCTCGGAGAACACCCTTCTGCACCTCTGGAGTAGGCTGCCGGCAGGGGTGG
GATCCAAGGCCCAGGTATTCCCTTCCCGAGTGGACTTTCCACTTTTACGGCATCCAAGGACTTCC
CTCTTATATTCCTCTGAAAGGACAGATTTCCTACCGGTTGCAGAAGTCTCTTCTGAGCGCAGCGG
GTTCCAGAGGGGCATGTGCCTTGACCGAGCCAGGAGTTGGGGCTGCGAGAACACAGAAGGGTGTT
CCTCTTCCCCTGCGCTCGGTCAAGGCAGAAGTTCTTTTCCCCTGC
Right flanking sequence: Indices 212483 -- 212982
GTGGAACTTTTTGCAGCAAAAAGGGTTGGTTGTTTGTTGCAGAAGTTGCGTTGCTTTTTTTTGGA
CCAAGAAAGCTTGCGTGTTGTTCTGAGCGCAGCGAAGCAGAAGTTCTTGCCACAAAAAGTGCCGA
AAAAAAGTAAGTTCTGAGCGCAGCGAAGCGAAGGGAGTGCCTAAACATTCGTGCCTGAAGGCGTT
AATTCGTGCAAAAAAAACTGTTGTTTGTTTGGTTGGTTGTTAATCCGTGCCTACCTTTGTAAGCG
AAACTTTTCGGCCTGTGGATCCGTACCTACCTTTGTAATTTCGAAACAACCTTTTCGGCAGAAGT
TTGGTTGGTTGGTTGTTGGGGTGCCTACCTTTGTAAGCGAAACTCTTCGTGCAGAAGGGTTGTTG
AAAGTTGGATCCAAGGTGTGAACAAAAAGCGCTTTCTGAGCGCAGCTTTCCCCCGTGCCAGGGGA
ATACCTCCAAAAAAGCTATCTTCGCGCCGTGCCAAAAGTTATTTT
Found at i:213605 original size:5 final size:5
Alignment explanation
Indices: 213595--213624 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
213585 AGCGCAGCTT
213595 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
213625 GGAGAACCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 213095 -- 213594
AAATGCGCAGCGGGGAAAAGAACTTCTGCTTTCAAACAACCAGAAGGTCACCTGCCTGCAACACC
GCAAACAACCTAGGTCCAAAAAGGTTGTTTGCGGTGTTGCAGAAGAAGCAGAAGAAACTTCTGCT
TCTGAGCGCAGGGGAAGGGAAGGGAACTTTTGGTTGCTTGCGAAGGTTCTAACTAACAACCTTTT
GCCACGAAATGACAAAGGTAGGCACGGATAGCAACTCTCTTTTAAGTCCTTTGTAACTTCGAAAC
TCTTCGGCAGAAGGGTTGTTGAAAGTTGGATCCAAGGGCCAAGAAGGGGGGCCGGTTGGTTGGCT
GGTTCTTCGCGTAGCAGAAGAGACTTATGCTGCCTGCGGTTGGCAGGCAGTTGGGGAAGACCGGT
TGTTTGGTTGGTTCTTCGCGCAGGGGGGAAGAGTTCTTGTTGGCCTTCGTGTTGAATCTGAGCGC
AGCGAAGAACCTTCTGGAACAAAAAGCGCTTTCTGAGCGCAGCTT
Right flanking sequence: Indices 213625 -- 214124
GGAGAACCCAACCTTTTGCCTCGCAGGGGAGAAGGCCCTTCCCCTGCGCTCGGTAAAGAACTCCT
GCCACCTCTGGGGGAATACCTGCGCTCGGTCAAGAACTAACTCCTGCCTGCCTTTTTTTTGGACC
AAGAAAGGTTGGTTGTTTGTGCGAACTTCTGCCAAAATCTCGCAGCGAAGCAGAAGTTCTTGCCA
CAAAAAAGAGTGCAACTTCTGCGGGTTGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGCGGG
AAGGCAACAACTTAAGTTGTTGAGTTCTTTTTGGGCAGAGGTTTGGTTGGCCGGATAAAAAAAAG
TTGCCGTGCCTTCACTTCGCTGCGCGAAGCAACAACACCCAGAAGGGCTGGGTTGTTCCCGCTGC
ACACAAACAACCCTTCTTGGCCCTTTGTAACTTCGAAACAACCTTAAAGGTTGTTCGGCCACCCC
AAAGGTTTAAACAACTTTTAGGCTTTCTGAGCGCAGCGAAGAACA
Found at i:218160 original size:32 final size:32
Alignment explanation
Indices: 218119--218546 Score: 856
Period size: 32 Copynumber: 13.4 Consensus size: 32
218109 GGTAACTTCT
218119 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218151 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218183 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218215 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218247 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218279 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218311 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218343 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218375 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218407 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218439 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218471 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218503 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
1 GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
218535 GCGAGGTTAAGG
1 GCGAGGTTAAGG
218547 GAGCAGCGGA
Statistics
Matches: 396, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 396 1.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (32 bp):
GCGAGGTTAAGGTATTGCCTTTACCGAGCCCC
Left flanking sequence: Indices 217619 -- 218118
GGAAGAAGTGTTTAAAGTGTGCAGAAGAAGAACTTCTGCTCCAATTTAAAGTGTGCAGAAGAGAC
TTCTGCTTCGCGCAGCGGGGAAAAGAAACTTCTGCTTTTTGGAAATCCGAAAAAGATTAATTACA
GAAGTTTGTTTGTTTTCGCAGCTACCGACTTCTGCTTTGAACCAAAAGCGCCAAAAGTTCTGAGC
GCAGCTTTCCCTTCCCCCGTGCGGGGGAAGAAGTAGAACCGTTTGACGGATTTACTTTGCTTCGC
GCAGCTACCGTGCCAGGTAGGCACGGATGAAAGCCACTTCTTCCCGAATGAGTGCGGGTTGCTGC
GTTTGCCAAAAGGGGCCAATGAGGGAACCTTTTCCCCACAAACTTCAGAGGAATATAAGAGGGAG
GCAGAAGGTTGTTTGGAAGTTCTTGACCGAGCGCAGGGGAAGAGAACTTCTGCCAACGCAGGGGA
AAAGGTTGGAAGTTCTTGACCGAGCACCGGGGAAGGGTAACTTCT
Right flanking sequence: Indices 218547 -- 219046
GAGCAGCGGAAAAAGTGGCGGTGCTGTTAAAAAATTACAATATCAGCAAGATAAATCTAAAGATC
AGGGGGTTGGGTCCCGGCAAATTGAGTGGGGTGCGCACTCTACACCAAGCAGGTTTTCGCATAGG
CAGAATCTGGGAGTGCACCCCGCGGGAACCCCCACAACGGCTGTCGACCAGCAAAGTCCAGGCGC
ATCTAATCTCCACTCTAAACACCCCTCCCACGATTTGCTCTTACTCTCTACGCCCCTAGCACCAT
TCCCCCTAGAGTGGTGCAGCCCAGTTCTGCGCCCTAGGGCAGCCTAATCCCCTGGGGCCATTCCC
CCTAGAGTGGTGCAGCCCAGTTCTGCGCCCTAGGGCGAGTGACACAGAGTTAAACGTTGGGGGGT
GGGGGTGCAGTCCAGTTCCGTGCCCCAGGGGAGCCCCGGGGCGGGTGACACAGAGTTAAACGTTG
GGGGGTTGGGAGTGCAGTGGTGGCGGGGTGTACAAAGAATGAACT
Found at i:220021 original size:26 final size:26
Alignment explanation
Indices: 219985--220058 Score: 112
Period size: 26 Copynumber: 2.8 Consensus size: 26
219975 AACCGTCTCG
*
219985 AGCGCAGCTGGAGGGTATCCATCCCT
1 AGCGCAGCTGGAGGGTACCCATCCCT
*
220011 AGCGCAGCTGGAGGGTACCCATCTCT
1 AGCGCAGCTGGAGGGTACCCATCCCT
* *
220037 AGGGTAGCTGGAGGGTACCCAT
1 AGCGCAGCTGGAGGGTACCCAT
220059 GTCCCTTTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.20, C:0.27, G:0.34, T:0.19
Consensus pattern (26 bp):
AGCGCAGCTGGAGGGTACCCATCCCT
Left flanking sequence: Indices 219485 -- 219984
CTAGTAGCCAGCGCGGGAAAAGTACTTTATGTTTTCTTGCCACTGCAAATGCCACTTTGACGCAC
TTGCAACTGCACATCCGCATTCTACGGTGTGCCTGGGCGCGAGTACTGGGGGCACAGTGTCAGTT
CTCTCTCCCCCCTCTACCCCAGAGGTATGTGCAGAAGTTCTCCGAGCGCAGGGGAAGAGGTTAAG
GAAACTCGCTTCATTCAGGTGTCCATGCGGGACATCTCTAGGGCAGTTGGAGGGAATCCGTCTCC
AGGGCAGCTGGAGGTATGTGCAGAAGTTCTCCGAGCGCAGGGGTTCTCCCCACAAACAACCAACC
TTCAGAGTAATATAAGAGGGAACTTCTTGCTTGGGAATCGCGCAGCTGGGGGGTATCCATCCCTA
GCGCAGCTGGAGGTATGTGCAGAAGTTCTCCGAGCGCAGGGGTTCTCCCCACAAACAACCAACCT
TCAGAGTAATATAAGAGGGAACTTCTTGCTTGGGAAACCGTCTCG
Right flanking sequence: Indices 220059 -- 220558
GTCCCTTTCTAGCCAATCCTGCTTTGGAGAAAGAATCACCAAAGAACGCCCGTAGCATATTAAAG
CATCGGCTTTTTTATTCCTTCGCCCCTGACTATAAATGGCGTGCCAGATCCCCGGGAGGGCCTTT
CTCTCCAATGTAGGGACTCCCCCCCTTACAACGTGAAAGGTGATGCCAGGAGCGTTTAATTCTTG
AGATGGAGGGGGAGGGGGCTGGCTTTTTTAATGTATTTCTCCCTGCTGCATTTAAACCTACCTTC
AGGGCCCTTTTAAAAACAAACTCTAGGTCAGTCCCGGGGGTGGGGGATTTGCTTGCTTTCTTTAC
ATGTTCCAGCTCTGTCTGTTCAGGGTCTGTCAGTAGAGGCCGGCGGGCCCTCCCTGGCACTAGTG
GGCGCGCAGGCAGAGGGGGGCATTCTCTACCTCGGCTCCCACTCTCCATTCCCCAGGGAGTACCG
GGTTGCTGGCCATGGTTGCTGCTGGTGGGGTGGAGAGTGCTGGCA
Found at i:221820 original size:37 final size:38
Alignment explanation
Indices: 221768--221844 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 38
221758 CATAAAGAAA
*
221768 AGGGTTTTATTGAGCCCCCTTCGGCGT-ACAGAGTCAAT
1 AGGGTTTTATTGAGCCCCCTTCGACGTGACA-AGTCAAT
* *
221806 AGGG-TTTGTTGAGCCCCCTTCGACGTGCCAAGTCAAT
1 AGGGTTTTATTGAGCCCCCTTCGACGTGACAAGTCAAT
221843 AG
1 AG
221845 AATGGAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
37 29 0.83
38 6 0.17
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (38 bp):
AGGGTTTTATTGAGCCCCCTTCGACGTGACAAGTCAAT
Left flanking sequence: Indices 221268 -- 221767
GGCATCCCCGCAAGACCTAGAAAGTGCATGGGAAAGAATGTGATGTTCACTCCTAGAAAAAAGAT
CCAAAAGTGTATTTGACCCAGTGTTTCTGAGTACTGTAAACCGCTAATTTTGCCAATCCAGTAAT
AGAAACCAGCAAAAAGGGCAGGGCAAAGACTGCCCCCATGGAAAGTACATAATGAAAGTGTGCTA
CCACATAGTATGTCATAATCTAGCCGGACGAGAGCCCGGGATTGGACTCGATCTTGCCTTTAGCT
CAACTTAATGACTACTCGGCTGCCACGTAGAGTCTCTAGAGATCCACAGCGGGCCAATGGCGACA
TTGGCCGCCGCGTTTCCACGGTATTGTCCCAACTGTTTTTCCCGGCCAGTGCAACCCTTCTGCTG
GCACAGATTGGGATTTCACCGTTAGCACCCCCCAGTAGGAAGTACCGCCGGAGATAGATTGATAA
ATCCCCAGCACAGTGGCATGACTGCATGACACATACATAAAGAAA
Right flanking sequence: Indices 221845 -- 222344
AATGGAAAAAGAATAAAAGAAGAGCCGCAGGGTAGCTTATGGACGGATGCAGTTAGTGGTGAGAG
GTAGCGAGGAAGGGAGTGCTAGGATAAATCTTGGAAAAGAACTGTTCTCCAACAGCTTTGGGTTT
ATTGACGAAGTCAATAGAGAAAAAGAACAATAACAGGCAGAATGTACGTTCTACCCCTCCCTTAG
TTGGTCAATGCCCCGGCGACTGGGGGGTTGTGGGGTTGAGCCCCCTTCGGCGTACAGAGTCAATA
GAGATCTAACGCCTTTTTCCAGCGGGAAAAGGCTGTACTCTTTTCCCCACGCAGGGGATATGCTA
GACAGTGTTTAGCTATCTTTTCAAGGCAACTGCGTCTGTAAACTTCTTCCCCTCCCCCAAAGGTA
GAAATCTGTTTTTATCTGGCGTACCCTGTTTACACCAGCAAAGTAACGATGCAGAGTTTCCAGCA
GATAGCATCCTTTTGACCAATGGAAAAGCTCGCACTCCCCCCGGA
Found at i:222639 original size:5 final size:5
Alignment explanation
Indices: 222629--222742 Score: 228
Period size: 5 Copynumber: 22.8 Consensus size: 5
222619 ACACCTCCCA
222629 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT
1 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT
222679 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT
1 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT
222729 GAGGT GAGGT GAGG
1 GAGGT GAGGT GAGG
222743 ACAACGCCTG
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 109 1.00
ACGTcount: A:0.20, C:0.00, G:0.61, T:0.19
Consensus pattern (5 bp):
GAGGT
Left flanking sequence: Indices 222129 -- 222628
GGAAAAGGCTGTACTCTTTTCCCCACGCAGGGGATATGCTAGACAGTGTTTAGCTATCTTTTCAA
GGCAACTGCGTCTGTAAACTTCTTCCCCTCCCCCAAAGGTAGAAATCTGTTTTTATCTGGCGTAC
CCTGTTTACACCAGCAAAGTAACGATGCAGAGTTTCCAGCAGATAGCATCCTTTTGACCAATGGA
AAAGCTCGCACTCCCCCCGGAAGAGTCACGGAGAGAGAAGCACCCTTTTGCCTCAATCCAGCCGC
TGCACCACTGGGGGAAATAATCTAACTCTTCCAGACGGCGAAATTGCATCAGGAAGATGCGCGCG
TCCCGTTCCCTGTACTTGTGCTGGCGCTCCTGGAGCATCCATTGCACATCTCGTCTCCTGCGACA
CTCCAGGAGGAAATGCAGTTGGCATTGGAGCCTGCTGGTGAGAGGGGGGTATCTCTGGAAAATCT
CGCAAATTTTACATATGCGCCGCTGGGTGTTTTCCACACCTCCCA
Right flanking sequence: Indices 222743 -- 223242
ACAACGCCTGCACTCCCTCTAGGGGCCGGGCGCACGCTGCCACCGATAACGCGGGCCATATCTTC
CAACATGCGCACGTTCTCAGGGTGGGCCTTTAGCTTGATCACAAGGCGGTATTGTATGTAACGGC
CCTTCCAGTGGTTGCACTGGATGGAGCCGTCTCCGTCCATGAGTCCCAGGAAGAACTGTGCCCAC
TCCTCTCTCTCTCTTGCCCTTGGGCCCCGCTGCGCCCCCCTCTTTTTGGGGGGGTTCTTACATTG
TCTGGGCTCTGAATGGAGTTTTTATTCTTTTTAATGGCCTGCTCTTCTTTATAATTAAATTCTTT
TATCATGCAAAGCGATGTCTATACCCGAATTAGCCAGTACTACGCCAGTGAGGCCACCAATGGTG
AATAACCTTTTGACAAAACCTATGGCAAAAAGCATTGGGGTTTTAAACTCTATGCTTCCACCCCT
TCCCCATGGTTGCAATCCAGGAAAATATTTTAATTCCTGTAGGGA
Found at i:227062 original size:5 final size:5
Alignment explanation
Indices: 227052--227077 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
227042 ATTGCACTCT
227052 CTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC C
227078 CCGGAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 226552 -- 227051
GAAACGGGGGGGAGTTGGCTGTTTTGTTATTGTTGCTAATAAATATGTCTGTTATAGAACCAAGA
AGTTACACCTATTACAAATCTGTAATTTGCCAACAGAAGGGTTATCTACACTCGTCAATTTAAAA
ATATAATGGAATTGCCACAAATCGTGCAATGTATTCTAAACAGCAGTTCCGCTGACGTTTTAAAG
GACAAGTCTCGGGGACTAGCTGCACAAATCGCTCTCCAGGCCACATCAGGTCAAAGGGGTAAAGC
AACCCCGTAAATCTATTGCATTTTTTCAGAACCGAAACGGGTGCGCCGGTGCAGCGCTTTATTCC
TTTTTAGATCAATACATACTTTTAGTATCTCTTCCCCCGGCACTCCTGAGCGGGAAAGTAGAGCG
GTACGGCAGCGTGCGGATTACAATCTTGGGGAAGATAGTTTTACTCTCTTTCCTGGTTTGGAGAC
GCATTTTCTGGCGTTGTCCTCTGTTGGGGGGTTTAATTGCACTCT
Right flanking sequence: Indices 227078 -- 227577
CCGGAAAAGAAAAGGTTTAGGATGGCTTTTAGCCGCACTGCAGTTTCCCCTGGAGCGCCATTGAC
AGCGCCCTGCCACCATTATCTACGCTCTAGGGGTGCCTTTTACCACTGGGTTACTGGGCACGCCC
GCAGAGGGCTAGGCAGCACATGGGGCAGAGCACTTGGTAAGAGCGGGAGACAGGTGGGGGCAATA
GAAATGCGCGGTACGTTTCACAGGGGAGGGGCCCCTGCAATTCCCCTTCGGGGCTGGCTTAAAGA
GTAATGGAAACAGAAGCGCAGGAGAAATGCAAACGGTGGCACCGTCCGCCACTTTCTAGACAGCG
CTTTCCCGGGGGAAGGCCCGCGCTTCCCAAGAAGTTCCCTCTTATATCCCTCTGAAGTTTGTGGG
GAAAAGTTACCCCTGCGCTCGGAGAACACCCTTCTGCACATACCTAGGGAGCAACCTAGTGCTGG
GAGATTTAAGAAAATGTGCGGCACGTTTCACTCCCCTACCACTCC
Found at i:232831 original size:47 final size:48
Alignment explanation
Indices: 232762--232858 Score: 169
Period size: 47 Copynumber: 2.0 Consensus size: 48
232752 TTCTCATAAG
**
232762 GTATGTGCAGAAGTTCCGAGCGCAGGCCCTTCTGCGA-GAACTTCTGC
1 GTATGTGCAGAAGGGCCGAGCGCAGGCCCTTCTGCGAGGAACTTCTGC
232809 GTATGTGCAGAAGGGCCGAGCGCAGGCCCTTCTGCGAGGAACTTCTGC
1 GTATGTGCAGAAGGGCCGAGCGCAGGCCCTTCTGCGAGGAACTTCTGC
232857 GT
1 GT
232859 CTTACCTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 35 0.74
48 12 0.26
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.22
Consensus pattern (48 bp):
GTATGTGCAGAAGGGCCGAGCGCAGGCCCTTCTGCGAGGAACTTCTGC
Left flanking sequence: Indices 232262 -- 232761
TTTACCAATAAATAGCTTCTAGCTGCTCGCTAAGGGAGCGTTGGAAACTGTGAACAAGCTCTCTA
CTCGCGCAGGCTCCGCTCTATGGGACTCTGAAGTTAATTAATTCCGGCACCCCCATCTTTTCTTT
TTTTTGTTTGTTTGTTTTTCGCGCCATCGAACTTAGTTAGGGGGGGGCTTCCAACCATGCACGTA
CCTTTCTCTCCAGCTGTGCTGAAGCGTGTCCTACTAATACCCACATTCCGCTCTCTGTTTTACAC
GGATAACAGCTTGCTTGGGGGAAGCGGTGAATTTTTAGGCACGCGGGGAGGGGCCCCCCACCTCT
CTGGTTGCGCCGGTTGTTGTCGCCCCCCCTCTCTCACCACCCCCAACCACCCCATTCCTTCTGGC
GAGGGTTTTCCTCCTAATGCGCCTGGATGGAAAGATTGTCCCGGCACGGGGATTCTTGCCGTTGA
AAAACATGTATCTCCTATGAACATTTTGATTTTGGTTCTCATAAG
Right flanking sequence: Indices 232859 -- 233358
CTTACCTTTACCGAGCGTAGGGGAAGAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAA
GAGGTGGAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAAGAGGTTCAGGGAGAAAGCG
TAGGGAGCTTGGGTAGATGGTTAACATGAGTGGTCTAGGCCTGGGAAAAGGGTTGGCGGGCGGAC
ATAGCCTTGGCTGCTTCGGTCAGTTCGGACAGAAACAGCTTCAAAAGAAAAGCTGAATTCGAATC
CGACACTTGCCGCCGCGTTGTAACGAAATCTAGGAGGACGAAGAGACGGAAAAGGCTTGCCCCCT
TCTCTTAAAAGCCGGGGGATAGAAGCGGTCGTGGCTGAGCTTCAGCCCCCTTTCTGTCTGGTGGG
ATAGGACCTTTGAGGAAGTCGAAGCTGGGCAGCCCAATCTGCAGTTTGAAAGGGATCCGTTACTG
GGGTACCCAGTAGCAAAAAAAAAGGGGACCACTTATTACCGGACA
Found at i:232899 original size:40 final size:40
Alignment explanation
Indices: 232844--232973 Score: 206
Period size: 40 Copynumber: 3.1 Consensus size: 40
232834 GCCCTTCTGC
232844 GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAA
1 GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAA
232884 GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAAGA
1 GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGG-A-A
232926 GGTGGAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAA
1 ----GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAA
232970 GAGG
1 GAGG
232974 TTCAGGGAGA
Statistics
Matches: 84, Mismatches: 0, Indels: 12
0.88 0.00 0.12
Matches are distributed among these distances:
40 42 0.50
41 1 0.01
42 1 0.01
44 1 0.01
45 1 0.01
46 38 0.45
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (40 bp):
GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAA
Left flanking sequence: Indices 232344 -- 232843
CTATGGGACTCTGAAGTTAATTAATTCCGGCACCCCCATCTTTTCTTTTTTTTGTTTGTTTGTTT
TTCGCGCCATCGAACTTAGTTAGGGGGGGGCTTCCAACCATGCACGTACCTTTCTCTCCAGCTGT
GCTGAAGCGTGTCCTACTAATACCCACATTCCGCTCTCTGTTTTACACGGATAACAGCTTGCTTG
GGGGAAGCGGTGAATTTTTAGGCACGCGGGGAGGGGCCCCCCACCTCTCTGGTTGCGCCGGTTGT
TGTCGCCCCCCCTCTCTCACCACCCCCAACCACCCCATTCCTTCTGGCGAGGGTTTTCCTCCTAA
TGCGCCTGGATGGAAAGATTGTCCCGGCACGGGGATTCTTGCCGTTGAAAAACATGTATCTCCTA
TGAACATTTTGATTTTGGTTCTCATAAGGTATGTGCAGAAGTTCCGAGCGCAGGCCCTTCTGCGA
GAACTTCTGCGTATGTGCAGAAGGGCCGAGCGCAGGCCCTTCTGC
Right flanking sequence: Indices 232974 -- 233473
TTCAGGGAGAAAGCGTAGGGAGCTTGGGTAGATGGTTAACATGAGTGGTCTAGGCCTGGGAAAAG
GGTTGGCGGGCGGACATAGCCTTGGCTGCTTCGGTCAGTTCGGACAGAAACAGCTTCAAAAGAAA
AGCTGAATTCGAATCCGACACTTGCCGCCGCGTTGTAACGAAATCTAGGAGGACGAAGAGACGGA
AAAGGCTTGCCCCCTTCTCTTAAAAGCCGGGGGATAGAAGCGGTCGTGGCTGAGCTTCAGCCCCC
TTTCTGTCTGGTGGGATAGGACCTTTGAGGAAGTCGAAGCTGGGCAGCCCAATCTGCAGTTTGAA
AGGGATCCGTTACTGGGGTACCCAGTAGCAAAAAAAAAGGGGACCACTTATTACCGGACAGCACA
GCTTTTCCTTTTCCGTGGGTGAGCGGGGGTAGGGTGAATGGGCTAATTCAATCCCTACCTAGACA
GTCGCGTCGAGTGTCGCGGTTGGACAAACGTGCCGGGGAAACGCA
Found at i:232937 original size:46 final size:45
Alignment explanation
Indices: 232844--232974 Score: 218
Period size: 46 Copynumber: 3.0 Consensus size: 45
232834 GCCCTTCTGC
232844 GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGG-A-A---
1 GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAAGAGGT
232884 GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAAGAGGT
1 GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAAGAGGT
232929 GGAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAAGAGGT
1 -GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAAGAGGT
232975 TCAGGGAGAA
Statistics
Matches: 85, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
40 38 0.45
41 1 0.01
42 1 0.01
46 45 0.53
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (45 bp):
GAGGAACTTCTGCGTCTTACCTTTACCGAGCGTAGGGGAAGAGGT
Left flanking sequence: Indices 232344 -- 232843
CTATGGGACTCTGAAGTTAATTAATTCCGGCACCCCCATCTTTTCTTTTTTTTGTTTGTTTGTTT
TTCGCGCCATCGAACTTAGTTAGGGGGGGGCTTCCAACCATGCACGTACCTTTCTCTCCAGCTGT
GCTGAAGCGTGTCCTACTAATACCCACATTCCGCTCTCTGTTTTACACGGATAACAGCTTGCTTG
GGGGAAGCGGTGAATTTTTAGGCACGCGGGGAGGGGCCCCCCACCTCTCTGGTTGCGCCGGTTGT
TGTCGCCCCCCCTCTCTCACCACCCCCAACCACCCCATTCCTTCTGGCGAGGGTTTTCCTCCTAA
TGCGCCTGGATGGAAAGATTGTCCCGGCACGGGGATTCTTGCCGTTGAAAAACATGTATCTCCTA
TGAACATTTTGATTTTGGTTCTCATAAGGTATGTGCAGAAGTTCCGAGCGCAGGCCCTTCTGCGA
GAACTTCTGCGTATGTGCAGAAGGGCCGAGCGCAGGCCCTTCTGC
Right flanking sequence: Indices 232975 -- 233474
TCAGGGAGAAAGCGTAGGGAGCTTGGGTAGATGGTTAACATGAGTGGTCTAGGCCTGGGAAAAGG
GTTGGCGGGCGGACATAGCCTTGGCTGCTTCGGTCAGTTCGGACAGAAACAGCTTCAAAAGAAAA
GCTGAATTCGAATCCGACACTTGCCGCCGCGTTGTAACGAAATCTAGGAGGACGAAGAGACGGAA
AAGGCTTGCCCCCTTCTCTTAAAAGCCGGGGGATAGAAGCGGTCGTGGCTGAGCTTCAGCCCCCT
TTCTGTCTGGTGGGATAGGACCTTTGAGGAAGTCGAAGCTGGGCAGCCCAATCTGCAGTTTGAAA
GGGATCCGTTACTGGGGTACCCAGTAGCAAAAAAAAAGGGGACCACTTATTACCGGACAGCACAG
CTTTTCCTTTTCCGTGGGTGAGCGGGGGTAGGGTGAATGGGCTAATTCAATCCCTACCTAGACAG
TCGCGTCGAGTGTCGCGGTTGGACAAACGTGCCGGGGAAACGCAC
Found at i:233563 original size:4 final size:4
Alignment explanation
Indices: 233554--233647 Score: 188
Period size: 4 Copynumber: 23.5 Consensus size: 4
233544 GACCTTTAGG
233554 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
233602 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GC
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GC
233648 GGGAGAATTT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 90 1.00
ACGTcount: A:0.49, C:0.26, G:0.26, T:0.00
Consensus pattern (4 bp):
GCAA
Left flanking sequence: Indices 233054 -- 233553
ATAGCCTTGGCTGCTTCGGTCAGTTCGGACAGAAACAGCTTCAAAAGAAAAGCTGAATTCGAATC
CGACACTTGCCGCCGCGTTGTAACGAAATCTAGGAGGACGAAGAGACGGAAAAGGCTTGCCCCCT
TCTCTTAAAAGCCGGGGGATAGAAGCGGTCGTGGCTGAGCTTCAGCCCCCTTTCTGTCTGGTGGG
ATAGGACCTTTGAGGAAGTCGAAGCTGGGCAGCCCAATCTGCAGTTTGAAAGGGATCCGTTACTG
GGGTACCCAGTAGCAAAAAAAAAGGGGACCACTTATTACCGGACAGCACAGCTTTTCCTTTTCCG
TGGGTGAGCGGGGGTAGGGTGAATGGGCTAATTCAATCCCTACCTAGACAGTCGCGTCGAGTGTC
GCGGTTGGACAAACGTGCCGGGGAAACGCACGTGATCTCTCTCACTGGATGCATGGCAGTCTGGC
GGCGGTCCGGCGGAACGAGATAGTATGGCAACCTTGACCTTTAGG
Right flanking sequence: Indices 233648 -- 234147
GGGAGAATTTAGCTTCAAACCACAAAGAGGCCCGGCAAGCCGGAACTCTCTGACCTACTTGCCCT
TTTTGGGAGAGGGGACGGGAGGCAGCATCCTAGCTCCCCCCCGGGATAAAGCCCTACGCGCTACA
CCAGTAGGTCGAGTGCGAAGCACTCTTAAGGCTTGCCCCTTTTTCTGAGCACGGGGGAAGGGAAG
GGCGCATTGAGGTTCCGAAGAATAACTCGTATGGACGTGTGATTGCGAAGAGTTCTTCTGGCCCA
GAAGGTTGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTCTTCAGGTTGGTTGTTTGTGGGCC
TTCCCCTGCGCTCGGAGAACTTACAACCTTCTGCACATACCTTTGGGAGAGCACGGGGCCGGGTA
GAACAGCTGCCTGCCTTTAAATGGTGATAACGCTCCGAAAAACCCCCTGCAAATGCCCCCCCTCT
CACAAAAAGGGTCACCCGGCCCCGCAGTGCCTCTCGAGTACCCGC
Found at i:237178 original size:5 final size:5
Alignment explanation
Indices: 237168--237206 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
237158 GAAGTTCCTC
237168 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
1 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
237207 AACCCCTGCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.21, C:0.00, G:0.79, T:0.00
Consensus pattern (5 bp):
GGAGG
Left flanking sequence: Indices 236668 -- 237167
CGATCTGCTTTTGAGCAAAGAAAAAAGGGGAGGGGAGGGGAGGGGAGAAGCTCTCATTCAATACG
CGCCAACACTTTTTTCATCGCCTGGGCGCCGCGCCGGGGAAGAGGAAGATAAAATGCAACAAAAA
CTCCCCCCCTTCAACCAATGGCATCAATGGTTTGCTCTGTGGAACAATTCTCCCCTACACTCTGG
TGAGGGGAGCAAACTATGTGCAACAACCTTCCCCCCAATTCTCCAAGCTCTTTTCAGCGAAAATC
GGGGCAGAGGAATGCTTTAGAGAGATACCACTCCATCCACAAAAAACATCGCGGGGGAGGTCAAG
AGTGCTGTTAGGAAAAAGAGAGTGCACCCCCCTCCAACCAGTCTCCCTAGGGGAAGAGGGGGTAG
AAAAGGAGAGAAGAAGCCCGTTGCAGGCTCTGGCAGGGGGGAAGGGTACCCGCACCTCTATTAAA
TGCGCCAGCCAGAGCTCATTTTTACTGGCCAATCCGAAGTTCCTC
Right flanking sequence: Indices 237207 -- 237706
AACCCCTGCGCTCGGTCAAGAACTCCCTTCACCTCTTCCCCTACGCTCGGTAAAGGTAAGAACTT
TTTTTGGTGAACCCTTCTTTTCCCGCGCTGGGGGAAGAAATGGCGCATTGCCGGGCAAACTTTAT
GGGCCAAGGCAGGGAGTTGGCAGGTAGTAGCCAGCCTATTGTAAGCACGTTGCAGTAAAAACTAA
CTGCCTTCTTTGGCCCGCTTTTAAACTGAAAGGAGCAAGGATTTTACCTGATCGTTAGCGTACAC
CCTCCCCGAAAGAGGAGGATAGAAATACACCCATTTTTCTCCCTTTTCACCAAGTAAGGGGCACG
GCAACATGTCTGAATCACGCACACCCCCCCAATGCACATGTGCCGGCGGAGATCATAGATCTGAA
AGAGCGCACCCCTTCCCTTCCCTTCCCTTCCCCCCTCCGGGGAGGGGAAGAGATGTTCCACCCCC
TGAAATGAATCCCCTCTTTGGCTTTTTCCGAAATAAGGGATTTAT
Found at i:239456 original size:4 final size:4
Alignment explanation
Indices: 239447--239492 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
239437 AATTAGTTAA
239447 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
239493 GTTTGTTTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Left flanking sequence: Indices 238947 -- 239446
ACCTAGCCCAGTACCCAGCGGTTCCCTTCCCCGCTGGGTGGGAACCGCAAAAAATCTATTACCCC
GCACGTTTCTATTGACTAGCATCCATCTATTATTGGCCTAGTAGCCCAATACCCTACAACCTAGG
ACAATCTCCTGGGCTGCGCTACTACGTTAATAAAATCTCACTGCGGGCGATGTACATATTGAGCC
CAGTCCCCGTAGGCGTACAGGAGTCTCCTACGCTGCGCTACTGACGTCAATAACTCTGTACGCTT
CGCTCAATAGAAAAGGCAAGTGGCACAGCCAGAGGAAACTTATTGACGTCTGTACCTTTCGCTCA
ATATATCTATTGAGCCGCAGGCGCAGGGAGGGGGGGTGTGGCAGGAAAATCCTTTAGCAGGGCAT
TAGTAAAGCACCTAGGCTGCGCTACTGACGTAGCCCAGTACCCTTCGGCGGTGGGAGCAACTAAA
GGGTTTGCGGGCTATTTTATTTTATCCGGTTCTTTAATTAGTTAA
Right flanking sequence: Indices 239493 -- 239992
GTTTGTTTGTTTGTTTCTTTTGACTGGCATCATCCTTAAGCGAAATCAGTGTGTTACTGGAACAA
AAAATATCGAAAACCTATTCAAAATTAAATATTGATGAAATTGGTCGTGTATTATCCATTGGAGA
TGGTATTGCTCGCGTCTATGGCCTAAACAAAATACAAGCTGGGGAGATGGTGGGATTTGCAAATG
GTGTCAAGGGGATGGCTTTGAATTTAGAAAATGACAATGTCGGTGTGGTGCTTTTTGGCAGTGAC
GCTGCCATTAAGGAGGGGGATGTGGTAAAGCGCACTGGAAACATCGTAGATGTGCCTGTAGGAAG
GGGCACTTTGGGGAGAGTATTGGACGCCCTCCCTATTGATGGCAAGGGAGCGCTAAAGGATGTTA
GTCGCAGCTTGGTAGAATCCAAAGCTCCTGGAATTATTGCCCGTAAGTCTGTCCATGAGCCGATG
CAAACGGGGCTAAAAGCAGTGGATAGTTTAGTACCCATTGGCCGA
Found at i:240456 original size:3 final size:3
Alignment explanation
Indices: 240448--240480 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
240438 GCACCGGGGA
240448 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
1 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
240481 GAAGGGAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
AGG
Left flanking sequence: Indices 239948 -- 240447
CAAACGGGGCTAAAAGCAGTGGATAGTTTAGTACCCATTGGCCGAGGACAGCGGGAGTTGATTAT
TGGAGACCGACAAACTGGAAAAACAGCCATTGCCATAGATACTATTTTAAACCAAAAACCGTTAC
ATCAGGCACATACCTTGACCGAGCGCAGGGGAAGAGGTTAAGGGATCAGCACGGGAAGGGGACCG
CCTCCTTAAAGCAGGGAGTAAATCCTACCCGGTTCGAACCGAATGAGTGCAAAAGGCTGGCTACG
GAGGCAGAAGGGTGTTCTTTACCGAGCCAGGAGTTGGGGCTGCGGGGGAAGCAGAAGAACTTCCC
ACCTCTTCCCCCCTGCGCTCGGTCAAGGTATGTGCCTTCTGCAACTGTATGTGCAGAAGGGTGTA
AGTTATCCGAGCTTGCCAGAAGTTGGGGTAACTTTTCCCCACAAACAACCTTCAGAGGAATATAA
GAGGGAGGTGGCAGGTATGTGCAGAAGTTCTCCGAGCACCGGGGA
Right flanking sequence: Indices 240481 -- 240980
GAAGGGAAGGGAAGGGAAGGGTAACTTCTGCGAGAACTTCTGCAACTGTATGTGCAGAAGTTTTC
CGAGCACCGCGCCCTTCTGCGGAGAGTGGGACAACTTGGATCTCACGACAACTGTTTTGCTTTCA
TTCGTGCCGCTGGGAAAAGTTGTTTGTAGAGAGTGGGGCCTGGCACGGGGGAAAGCTGCGCTCAG
AAAGCGCTTTTTGAAATCCGCAGAAGTTCTTCGCTGCGCGAAGCAGAAGTTCCCAACCCACAACC
TTTTTTGCTTTGCAGAAGTTTCTGCGCGAAGCAAAAGTTCACGCAAACAACCCTTCTTTCTTGGC
CCTTTGTCATTTCGAAACAACCAGAGGGCAAGCCCAAAAAGTTACAAAGGCACGGCATAAAAGGG
CAGGGCCCGTTCACACCTTGGAACCAAAGAGTTCACTCATTCGCTTACAAAGGCACGGCACGGGG
GTTGCAGGGGAAAGAACCTTTTCCCCTGCAAGCAAGCAAGCAAGC
Found at i:240972 original size:4 final size:4
Alignment explanation
Indices: 240963--241022 Score: 120
Period size: 4 Copynumber: 15.0 Consensus size: 4
240953 CTTTTCCCCT
240963 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
241011 GCAA GCAA GCAA
1 GCAA GCAA GCAA
241023 AAAGTTCACT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00
Consensus pattern (4 bp):
GCAA
Left flanking sequence: Indices 240463 -- 240962
AGGAGGAGGAGGAGGAGGGAAGGGAAGGGAAGGGAAGGGTAACTTCTGCGAGAACTTCTGCAACT
GTATGTGCAGAAGTTTTCCGAGCACCGCGCCCTTCTGCGGAGAGTGGGACAACTTGGATCTCACG
ACAACTGTTTTGCTTTCATTCGTGCCGCTGGGAAAAGTTGTTTGTAGAGAGTGGGGCCTGGCACG
GGGGAAAGCTGCGCTCAGAAAGCGCTTTTTGAAATCCGCAGAAGTTCTTCGCTGCGCGAAGCAGA
AGTTCCCAACCCACAACCTTTTTTGCTTTGCAGAAGTTTCTGCGCGAAGCAAAAGTTCACGCAAA
CAACCCTTCTTTCTTGGCCCTTTGTCATTTCGAAACAACCAGAGGGCAAGCCCAAAAAGTTACAA
AGGCACGGCATAAAAGGGCAGGGCCCGTTCACACCTTGGAACCAAAGAGTTCACTCATTCGCTTA
CAAAGGCACGGCACGGGGGTTGCAGGGGAAAGAACCTTTTCCCCT
Right flanking sequence: Indices 241023 -- 241522
AAAGTTCACTCATTCTCACATTCGTGCCACTGGGCCACAACTTTTTATCACGAAGTGTGGCAAGT
CGGGATCCAAGGATCTCAACACGCACGCACGCTTTAAGTGCCTGCCAGTCCTGAGCGCAGCTACC
GAACTTTGCACGGCACGGATAACCCAAAAAGAAAGTTCCCTCATTGGCCAACTTTAAAACGTGCT
CACAAAAGTTAGTTCTCATTGGCACTCATGTGCCGCAGCAACCGGTTGCACGAATAGCAACTTTT
TTTTTAAGTGCCTTAAACAGTTCAGTTGTCGTGAGAAAACGTGTCCCACGGCCCGACTTGCCAGC
CCTTAAAATACAGTTGTCGGGATCCAAGGGCCAAGAAGGTCTTCGCGCAGCGAAGTGAAGGACCC
ACGATCTTTTTTCCCGACTTCCCCCCTCATTCAAACTTGCGCCGGCCTGCCTGGCAGGGCACTAC
CGTGGGACGGCAGCCAGGGCCCACGGAATGCAGGTCGGGCTGCTT
Found at i:244241 original size:5 final size:5
Alignment explanation
Indices: 244231--244266 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
244221 AGTCGAGTGG
244231 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC C
244267 CGGGGGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 243731 -- 244230
TACAGCCAGAACTACGGTCAAGTTCGCCCAGGTTCGCACAATCGGTCTCACCTTCCTTCGGGCTC
GAAGTAGCTCAACAAAGCTTGAGCTACTTCGTTTCTACAAGCGCTCTGTAGTCGTTCATTGTTAA
TCTTGGCCTTTCCGCAACTTTCTTTAAAGTACAGACTAAGCTAACCTTTACAAGACCCCAGCTAA
GATACTTGAACTTCAACTCATTCTCTCTATCATTCCCCTATCGAAATATTGAATTAAAGTACCTG
AAGGATGCTTTGTTCCGGGTGGGGGTCATGCTTTCTTGCCTACCACTCCAAGTCATGCTTTCTCG
CTCATGATGGATACATAGCCTGGGAGAGCAAGGGCTAAGGTGATTCCGGGTTCCCCGGCACTTAA
TGTTAAGTCAAGGGCCCAGGTGGCTAAGGCACCAATCGAAGAACCGGCCAAGTCAGCCCCCGAAA
AAGGGGTAGTGGGTGGGAGAGTGGACCTTTTATTAAGTCGAGTGG
Right flanking sequence: Indices 244267 -- 244766
CGGGGGAACTAGTGGACTCCCAGGTTCGAGTGTCTTCCCCCGGCTACGGGGTGGGATCCAAGGCA
CCCGTGCCTAAACACGTGCCACTTTTTAAGAATGAGGGGGTTCCAGAGGTGGCAGGAGGTTGTTT
GGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTGCGAGAACTTACACCCTTCTGCCTTCTGCCTTC
TGCAACTGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCTTGCCAGAAGTTGGGGTAACTTCTGCC
CCGCGAGAACACCCTGCCACCTCTTCCCCCCTGCGCTCGGTCAAGGTATGTGCCTTCTGCAACTG
TATGTGCAGAAGGGTGTAAGTTCTCCGAGCACCGGGGTTTTCCCCACAAACAACCAACCAACCTT
CAGAGTAATATAAGAGAGAGCAGGAGTTATTTTACCGCGGGCCTTCCCCCGGGACAGGAGGGTGT
TCTCTTCCCCTGCGCTCGGTCAAGAACACCCTTCTGCCTGCTACG
Found at i:245029 original size:14 final size:14
Alignment explanation
Indices: 245005--245039 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
244995 TGGACTTCCT
245005 TAAACGGTATCCAAA
1 TAAA-GGTATCCAAA
245020 TAAAGGTATCCAAA
1 TAAAGGTATCCAAA
*
245034 TCAAGG
1 TAAAGG
245040 GAATCCAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.20
Consensus pattern (14 bp):
TAAAGGTATCCAAA
Left flanking sequence: Indices 244505 -- 245004
AGAAGTTGGGGTAACTTCTGCCCCGCGAGAACACCCTGCCACCTCTTCCCCCCTGCGCTCGGTCA
AGGTATGTGCCTTCTGCAACTGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCACCGGGGTTTTCC
CCACAAACAACCAACCAACCTTCAGAGTAATATAAGAGAGAGCAGGAGTTATTTTACCGCGGGCC
TTCCCCCGGGACAGGAGGGTGTTCTCTTCCCCTGCGCTCGGTCAAGAACACCCTTCTGCCTGCTA
CGGGTGGGTGAAAGCAGAAGAACCCCTGCCACCCTCTTATATCCCTCTTCAGGTTGTTTGTGGGG
AAACCCCTGCGAAAACTTCTGCTTTTGTTTAAACCTTGGATCCCGACAACTGTATTCACTTGTGG
CACGAATCCCCGAGTCTTAAATCCGTGCCTACCTTATTCGTGGCCCGGTAAGTTTCATTGGCACT
CCTTGGATAAGGTGGGATCCAAGGCCCAGGTCGAGTGGACTTCCT
Right flanking sequence: Indices 245040 -- 245539
GAATCCAAGGACCCGCCTCCCCAGAGGAATAGCTCTCCGGGGGGGGAAGACACTCGGATCCCGTG
CCGGGGGAAGTCCTTGGATCCCACCCTTACGGTCCACTCTCCCACCTTATCCAAGGAGTGCCCAA
AAGGTTTGTTGTTTTTCCCCCGTGCCTACCTGCGAAACTTTTCGTGCAGAAGTTGCTTGCTTGCT
TGCAGAAGGTTCTTTCCCCTCCCCTCCCCCGTGCCAGCCTACCTTTGTAAGCGAAACTCTTCGGC
CACGGTTGGGGGAAGGCCCTTCCCCTCCCCAAAGGTTTAAACCAAAAGCAGAAGATCTGAGCGCA
GCTTTCCCCCGTGCGGGGGAAGAAGGAGAACCGGTTTGACGGATTTCCAAAAGCAGAAGCAGAAG
TTTTCGCAGCGGTGAAGGGGAAGCAAAAGTTGGTTGCTTGCGAAGGTTCACGGCAACTTTTACGG
GGGCCTTCTGCAAGCAAGCAACAAACAACCTTCTGCACGAAAAGT
Found at i:245693 original size:24 final size:24
Alignment explanation
Indices: 245666--245711 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
245656 GAAAACTGAG
*
245666 TGAGTGCCACTCCGAATGAGGGGA
1 TGAGTGCCACTCAGAATGAGGGGA
*
245690 TGAGTGCCACTCAGGATGAGGG
1 TGAGTGCCACTCAGAATGAGGG
245712 AAGGGGGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.39, T:0.17
Consensus pattern (24 bp):
TGAGTGCCACTCAGAATGAGGGGA
Left flanking sequence: Indices 245166 -- 245665
CCAAAAGGTTTGTTGTTTTTCCCCCGTGCCTACCTGCGAAACTTTTCGTGCAGAAGTTGCTTGCT
TGCTTGCAGAAGGTTCTTTCCCCTCCCCTCCCCCGTGCCAGCCTACCTTTGTAAGCGAAACTCTT
CGGCCACGGTTGGGGGAAGGCCCTTCCCCTCCCCAAAGGTTTAAACCAAAAGCAGAAGATCTGAG
CGCAGCTTTCCCCCGTGCGGGGGAAGAAGGAGAACCGGTTTGACGGATTTCCAAAAGCAGAAGCA
GAAGTTTTCGCAGCGGTGAAGGGGAAGCAAAAGTTGGTTGCTTGCGAAGGTTCACGGCAACTTTT
ACGGGGGCCTTCTGCAAGCAAGCAACAAACAACCTTCTGCACGAAAAGTTTCGCTTACAAAGGAG
GCATAAACGTATCCGTTTATACCTACCTTTGGTTCCAGGGCCTTCCCCCAAGAAGTGGCCGAAAA
GGTTGTTTCGGATGAGACTTTTGCCGAAAAGTTTCGAAAACTGAG
Right flanking sequence: Indices 245712 -- 246211
AAGGGGGGAGAGTGGTTCCTTGGATCCCGACTTGCCACACTTGCCAGAAGAGACTTTTCGGCCAC
GAATCCAAGGTGTGCCTTCGAATGAGTGAACTTTTTGGTTCCAAGGACCTCCAGAAGGTTGGTTG
TTTGGCCGGTTCTTCGCGCAGCGGAGTGAAGGTGTGAACAAAAAAGCTATCTGAGCGCAGAAACT
AACTTCTGCACACTTTTTGGACCAAGATCTTCTGCAAGAAGTTCTTCGCGCAGAACTTCTGCACA
CTTTTTGGAACGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAGCGAAGAAACA
CACTTCTGCTTCCAAACTTCTGCTTCGCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACA
CTTTAAAGAAAGCAAGCAAGCAAGCAAGTATTCCACTCCAAACTTCTGCTTCGCGCAGCGAAGAA
ACACACTTCTGCTTCCAAACTCCTGCTTCGCGCAGCAGAAGTTTC
Found at i:246275 original size:133 final size:128
Alignment explanation
Indices: 245962--246289 Score: 333
Period size: 133 Copynumber: 2.5 Consensus size: 128
245952 TCGCGCAGAA
245962 CTTCTGCACACTTTTTGGAACGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAG
1 CTTCTGCACACTTTTTGGAACGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAG
* ** *
246027 CGAAGAAACACACTTCTGCTTCCAAACTTCTGCTTCGCGCAGCAGACTTCTGCTGCCAAACAATT
66 CGAAGAAACACACTTCTGCTTCCAAACTCCTGCTTCGCGCAGCAGACTTCAACTGCCAAAC-A-C
*** * * * ** * ** * **
246092 CTTCTGCACACTTTAAAGAAAGCAAGCAAGCAAGCAAG--TATTCCAC-TCCAAACTTCTGCTTC
1 CTTCTGCACACTTTTTGGAACGGAACCAAG-AAGTTAGTCTCTTCTGCTTCCAAA----AG-AAC
* **
246154 GCGCAGCGAAGAAACACACTTCTGCTTCCAAACTCCTGCTTCGCGCAGCAGAAGTTTCAACT-TT
60 GCGCAGCGAAGAAACACACTTCTGCTTCCAAACTCCTGCTTCGCGCAGCAG-A-CTTCAACTGCC
*
246218 TAAC-C
123 AAACAC
246223 CTTCTGCACACTTTTTGGAACGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAG
1 CTTCTGCACACTTTTTGGAACGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAG
246288 CG
66 CG
246290 GTGAAGGGGA
Statistics
Matches: 151, Mismatches: 36, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
128 15 0.10
129 6 0.04
130 29 0.19
131 29 0.19
132 6 0.04
133 57 0.38
134 4 0.03
135 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (128 bp):
CTTCTGCACACTTTTTGGAACGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAG
CGAAGAAACACACTTCTGCTTCCAAACTCCTGCTTCGCGCAGCAGACTTCAACTGCCAAACAC
Left flanking sequence: Indices 245462 -- 245961
GTTGCTTGCGAAGGTTCACGGCAACTTTTACGGGGGCCTTCTGCAAGCAAGCAACAAACAACCTT
CTGCACGAAAAGTTTCGCTTACAAAGGAGGCATAAACGTATCCGTTTATACCTACCTTTGGTTCC
AGGGCCTTCCCCCAAGAAGTGGCCGAAAAGGTTGTTTCGGATGAGACTTTTGCCGAAAAGTTTCG
AAAACTGAGTGAGTGCCACTCCGAATGAGGGGATGAGTGCCACTCAGGATGAGGGAAGGGGGGAG
AGTGGTTCCTTGGATCCCGACTTGCCACACTTGCCAGAAGAGACTTTTCGGCCACGAATCCAAGG
TGTGCCTTCGAATGAGTGAACTTTTTGGTTCCAAGGACCTCCAGAAGGTTGGTTGTTTGGCCGGT
TCTTCGCGCAGCGGAGTGAAGGTGTGAACAAAAAAGCTATCTGAGCGCAGAAACTAACTTCTGCA
CACTTTTTGGACCAAGATCTTCTGCAAGAAGTTCTTCGCGCAGAA
Right flanking sequence: Indices 246290 -- 246789
GTGAAGGGGAAGGAAAAGAACTTCTGCGGATTTCAAAAGAGAGTGCGGGGAAAAGGTTGGTTGTT
TTTCGCAGCGGGAACTTTTGGCAACGCAACTTTTTTAGTTCCTTTCAGGCCACGAGATTACAAAG
GTAGGCTTGCACGGATTACTGCCACTTAAAGTTGCCCTCATTGGCACTCATGTTTAGGCACTGGC
ACCAACCAAGGTCAGGCCTTTACTTCACGTAGTGAAGTGAAGGCACTGGTCATCATGGTGGCACT
CCTTGGATCCGGGGCACCGGTTGAATTAGCTCCGTTTTGCTCACCGTCCTTCCGTAAAGCCTGAC
TTCCGCCTTCCTTCCTAAGGGGTCAGGTCCACCAGTCGTACCCCCCTTACTTACCCGGGGGGTCA
GGTCCACCAATCGTACCCGACGGGTCACCCTGGTTTTGTGGGGGGTACCTCTGGGTTGTGGAAGG
TCCAACCAATCGTACCCGACTCCGAAAGGGGCACCGAGGTGAGGT
Found at i:249162 original size:14 final size:14
Alignment explanation
Indices: 249133--249173 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
249123 GAATAATGAG
*
249133 ATATCTATGCTATCT
1 ATATCTA-GATATCT
249148 ATATCTAGATATCT
1 ATATCTAGATATCT
249162 ATATCTAGATAT
1 ATATCTAGATAT
249174 AGATGTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (14 bp):
ATATCTAGATATCT
Left flanking sequence: Indices 248633 -- 249132
GGGATCCCCCCCCCACCGGACCACCACACCTTGCTCATTTTCCAGCTGCTCCAGCAACGTACCGT
CGATGGTCTAACTGTCTGGTACCGGTGTCATGGAACCTGGGCGGGCTACTTAGAGCTTCGTGTAT
GCCATGATCCACAGATCAGGGCAGAGCGAGATATAATCCTACCTGTGGCCGAAAAGGTTGTTTCG
AAAAACTATGATCCAAAGATTCACAAGGATGGATTTCAGCCCCCGTCTGAACTCTGTCAGACACC
TCCAATGGATCCGAGAGGGTTGAGCTTTGTGAATGCGTAGAGTATAGCCGCCGCCCACTAGGGCG
GGCTGCTTTTAGCCACTCAGGCCCCTTCCCGGCTACTGGATTACTACTCCGGTGCTTTACCCCTA
CATTGGGCCGGTAGGGGGGTGGGCGGGTACTACGGACCCTCTGCCATCCATCGCAGAGCCCTGTA
ATTAGCTATGAAGGGGGAGAGGCGCTAAGCGCAGTGAATAATGAG
Right flanking sequence: Indices 249174 -- 249673
AGATGTATATATCTAGATATAGATAGGTATAGATATATACATCTATATCTTATATAATATATAGA
TGTATATATCTATATTATATAAGATATATATATAATATAGATATATATCTATATATGTATGTATG
TACCGATATATATATGTTATATATTATATATAGATATATATATATATCTATATATAATATATAAC
ATATATATATCGGTACATACATACATATATAGATATATATATATAAAGATATCTATATATAGATA
TCTATATATACAGATATATCTATATATAGATATTGTATAGATATATATCTACATATAGATCTAGA
TATCTATATAGGTAGATATATATCTATATAAAGATACACGGATAGAGACCTATACGTATCTATGG
CTTCGCCCCAAAGACTTCCCTTAGCCAGGAAAAAGCGCTGAAAGTTGGGCCGCGCCTCCGGCCAG
GGAAGAAGCGAAGCTTCTTTTATTCTCTCGAGCTTGATTGGCCGG
Found at i:249168 original size:20 final size:20
Alignment explanation
Indices: 249143--249198 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
249133 ATATCTATGC
* * *
249143 TATCTATATCTAGATATCTA
1 TATCTAGATATAGATATATA
*
249163 TATCTAGATATAGATGTATA
1 TATCTAGATATAGATATATA
249183 TATCTAGATATAGATA
1 TATCTAGATATAGATA
249199 GGTATAGATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (20 bp):
TATCTAGATATAGATATATA
Left flanking sequence: Indices 248643 -- 249142
CCCCACCGGACCACCACACCTTGCTCATTTTCCAGCTGCTCCAGCAACGTACCGTCGATGGTCTA
ACTGTCTGGTACCGGTGTCATGGAACCTGGGCGGGCTACTTAGAGCTTCGTGTATGCCATGATCC
ACAGATCAGGGCAGAGCGAGATATAATCCTACCTGTGGCCGAAAAGGTTGTTTCGAAAAACTATG
ATCCAAAGATTCACAAGGATGGATTTCAGCCCCCGTCTGAACTCTGTCAGACACCTCCAATGGAT
CCGAGAGGGTTGAGCTTTGTGAATGCGTAGAGTATAGCCGCCGCCCACTAGGGCGGGCTGCTTTT
AGCCACTCAGGCCCCTTCCCGGCTACTGGATTACTACTCCGGTGCTTTACCCCTACATTGGGCCG
GTAGGGGGGTGGGCGGGTACTACGGACCCTCTGCCATCCATCGCAGAGCCCTGTAATTAGCTATG
AAGGGGGAGAGGCGCTAAGCGCAGTGAATAATGAGATATCTATGC
Right flanking sequence: Indices 249199 -- 249698
GGTATAGATATATACATCTATATCTTATATAATATATAGATGTATATATCTATATTATATAAGAT
ATATATATAATATAGATATATATCTATATATGTATGTATGTACCGATATATATATGTTATATATT
ATATATAGATATATATATATATCTATATATAATATATAACATATATATATCGGTACATACATACA
TATATAGATATATATATATAAAGATATCTATATATAGATATCTATATATACAGATATATCTATAT
ATAGATATTGTATAGATATATATCTACATATAGATCTAGATATCTATATAGGTAGATATATATCT
ATATAAAGATACACGGATAGAGACCTATACGTATCTATGGCTTCGCCCCAAAGACTTCCCTTAGC
CAGGAAAAAGCGCTGAAAGTTGGGCCGCGCCTCCGGCCAGGGAAGAAGCGAAGCTTCTTTTATTC
TCTCGAGCTTGATTGGCCGGAAAGCCCCCCGGGCCGTAGGGCGCT
Found at i:249204 original size:20 final size:20
Alignment explanation
Indices: 249161--249346 Score: 80
Period size: 20 Copynumber: 9.2 Consensus size: 20
249151 TCTAGATATC
249161 TATATCTAGATATAGATGTA
1 TATATCTAGATATAGATGTA
249181 TATATCTAGATATAGATAGGTA
1 TATATCTAGATATAGAT--GTA
* * * * *
249203 TAGATATATACATCTATATCT-
1 T--ATATCTAGATATAGATGTA
* *
249224 TATAT-AATATATAGATGTA
1 TATATCTAGATATAGATGTA
* * *
249243 TATATCTATATTATATAAGATA
1 TATATCTAGA-TATAGATG-TA
*
249265 TATATATA-ATATAGA--TA
1 TATATCTAGATATAGATGTA
*
249282 TATATCTATATAT-GTATGTA
1 TATATCTAGATATAG-ATGTA
* * * * *
249302 TGTACCGATATATATATGTTA
1 TATATCTAGATATAGATG-TA
* *
249323 TATAT-TATATATAGATATA
1 TATATCTAGATATAGATGTA
249342 TATAT
1 TATAT
249347 ATATCTATAT
Statistics
Matches: 127, Mismatches: 25, Indels: 29
0.70 0.14 0.16
Matches are distributed among these distances:
17 10 0.08
18 13 0.10
19 16 0.13
20 49 0.39
21 13 0.10
22 14 0.11
24 12 0.09
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.44
Consensus pattern (20 bp):
TATATCTAGATATAGATGTA
Left flanking sequence: Indices 248661 -- 249160
CCTTGCTCATTTTCCAGCTGCTCCAGCAACGTACCGTCGATGGTCTAACTGTCTGGTACCGGTGT
CATGGAACCTGGGCGGGCTACTTAGAGCTTCGTGTATGCCATGATCCACAGATCAGGGCAGAGCG
AGATATAATCCTACCTGTGGCCGAAAAGGTTGTTTCGAAAAACTATGATCCAAAGATTCACAAGG
ATGGATTTCAGCCCCCGTCTGAACTCTGTCAGACACCTCCAATGGATCCGAGAGGGTTGAGCTTT
GTGAATGCGTAGAGTATAGCCGCCGCCCACTAGGGCGGGCTGCTTTTAGCCACTCAGGCCCCTTC
CCGGCTACTGGATTACTACTCCGGTGCTTTACCCCTACATTGGGCCGGTAGGGGGGTGGGCGGGT
ACTACGGACCCTCTGCCATCCATCGCAGAGCCCTGTAATTAGCTATGAAGGGGGAGAGGCGCTAA
GCGCAGTGAATAATGAGATATCTATGCTATCTATATCTAGATATC
Right flanking sequence: Indices 249347 -- 249846
ATATCTATATATAATATATAACATATATATATCGGTACATACATACATATATAGATATATATATA
TAAAGATATCTATATATAGATATCTATATATACAGATATATCTATATATAGATATTGTATAGATA
TATATCTACATATAGATCTAGATATCTATATAGGTAGATATATATCTATATAAAGATACACGGAT
AGAGACCTATACGTATCTATGGCTTCGCCCCAAAGACTTCCCTTAGCCAGGAAAAAGCGCTGAAA
GTTGGGCCGCGCCTCCGGCCAGGGAAGAAGCGAAGCTTCTTTTATTCTCTCGAGCTTGATTGGCC
GGAAAGCCCCCCGGGCCGTAGGGCGCTCTTCGCGCTACCCTGCGCTCCGCGCCATTCCTTGGCGC
TTCGCTTTCCTTAACCTCTTCCCCTGCGCTCGGTCAAGAACTTCCAAACTTCTGCCTCTCACTGG
CGTCTTTTCTTGGATGGACTTCGCCGTTATTACCCAAAGGCTGTA
Found at i:249205 original size:30 final size:32
Alignment explanation
Indices: 249168--249266 Score: 89
Period size: 30 Copynumber: 3.2 Consensus size: 32
249158 ATCTATATCT
249168 AGATATAGATGTATATATCTAGAT-ATAGAT-
1 AGATATAGATGTATATATCTAGATCATAGATA
* * * * * *
249198 AGGTATAGATATATACATCTATATCTTATATA
1 AGATATAGATGTATATATCTAGATCATAGATA
* * *
249230 ATATATAGATGTATATATCTATAT--TATATA
1 AGATATAGATGTATATATCTAGATCATAGATA
249260 AGATATA
1 AGATATA
249267 TATATAATAT
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
30 32 0.57
31 4 0.07
32 20 0.36
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.40
Consensus pattern (32 bp):
AGATATAGATGTATATATCTAGATCATAGATA
Left flanking sequence: Indices 248668 -- 249167
CATTTTCCAGCTGCTCCAGCAACGTACCGTCGATGGTCTAACTGTCTGGTACCGGTGTCATGGAA
CCTGGGCGGGCTACTTAGAGCTTCGTGTATGCCATGATCCACAGATCAGGGCAGAGCGAGATATA
ATCCTACCTGTGGCCGAAAAGGTTGTTTCGAAAAACTATGATCCAAAGATTCACAAGGATGGATT
TCAGCCCCCGTCTGAACTCTGTCAGACACCTCCAATGGATCCGAGAGGGTTGAGCTTTGTGAATG
CGTAGAGTATAGCCGCCGCCCACTAGGGCGGGCTGCTTTTAGCCACTCAGGCCCCTTCCCGGCTA
CTGGATTACTACTCCGGTGCTTTACCCCTACATTGGGCCGGTAGGGGGGTGGGCGGGTACTACGG
ACCCTCTGCCATCCATCGCAGAGCCCTGTAATTAGCTATGAAGGGGGAGAGGCGCTAAGCGCAGT
GAATAATGAGATATCTATGCTATCTATATCTAGATATCTATATCT
Right flanking sequence: Indices 249267 -- 249766
TATATAATATAGATATATATCTATATATGTATGTATGTACCGATATATATATGTTATATATTATA
TATAGATATATATATATATCTATATATAATATATAACATATATATATCGGTACATACATACATAT
ATAGATATATATATATAAAGATATCTATATATAGATATCTATATATACAGATATATCTATATATA
GATATTGTATAGATATATATCTACATATAGATCTAGATATCTATATAGGTAGATATATATCTATA
TAAAGATACACGGATAGAGACCTATACGTATCTATGGCTTCGCCCCAAAGACTTCCCTTAGCCAG
GAAAAAGCGCTGAAAGTTGGGCCGCGCCTCCGGCCAGGGAAGAAGCGAAGCTTCTTTTATTCTCT
CGAGCTTGATTGGCCGGAAAGCCCCCCGGGCCGTAGGGCGCTCTTCGCGCTACCCTGCGCTCCGC
GCCATTCCTTGGCGCTTCGCTTTCCTTAACCTCTTCCCCTGCGCT
Found at i:249229 original size:2 final size:2
Alignment explanation
Indices: 249201--249528 Score: 154
Period size: 2 Copynumber: 169.0 Consensus size: 2
249191 TATAGATAGG
* * * * * *
249201 TA TA GA TA TA TA CA TC TA TA TC T- TA TA TA -A TA TA TA GA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
249241 TA TA TA TC TA TA T- TA TA TA -A GA TA TA TA TA TA -A TA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * ** * *
249280 TA TA TA TC TA TA TA TG TA TG TA TG TA CC GA TA TA TA TA TG T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
249321 TA TA TA T- TA TA TA TA GA TA TA TA TA TA TA TC TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * ** * * * *
249361 TA TA TA -A CA TA TA TA TA TC GG TA CA TA CA TA CA TA TA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
249402 TA TA TA TA TA TA AA GA TA TC TA TA TA TA GA TA TC TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * *
249444 CA GA TA TA TC TA TA TA TA GA TA T- TG TA TA GA TA TA TA TC TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * ** * *
249485 CA TA TA GA TC TA GA TA TC TA TA TA GG TA GA TA TA TA TC TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
249527 TA
1 TA
249529 AAGATACACG
Statistics
Matches: 229, Mismatches: 87, Indels: 20
0.68 0.26 0.06
Matches are distributed among these distances:
1 10 0.04
2 219 0.96
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.42
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 248701 -- 249200
TGGTCTAACTGTCTGGTACCGGTGTCATGGAACCTGGGCGGGCTACTTAGAGCTTCGTGTATGCC
ATGATCCACAGATCAGGGCAGAGCGAGATATAATCCTACCTGTGGCCGAAAAGGTTGTTTCGAAA
AACTATGATCCAAAGATTCACAAGGATGGATTTCAGCCCCCGTCTGAACTCTGTCAGACACCTCC
AATGGATCCGAGAGGGTTGAGCTTTGTGAATGCGTAGAGTATAGCCGCCGCCCACTAGGGCGGGC
TGCTTTTAGCCACTCAGGCCCCTTCCCGGCTACTGGATTACTACTCCGGTGCTTTACCCCTACAT
TGGGCCGGTAGGGGGGTGGGCGGGTACTACGGACCCTCTGCCATCCATCGCAGAGCCCTGTAATT
AGCTATGAAGGGGGAGAGGCGCTAAGCGCAGTGAATAATGAGATATCTATGCTATCTATATCTAG
ATATCTATATCTAGATATAGATGTATATATCTAGATATAGATAGG
Right flanking sequence: Indices 249529 -- 250028
AAGATACACGGATAGAGACCTATACGTATCTATGGCTTCGCCCCAAAGACTTCCCTTAGCCAGGA
AAAAGCGCTGAAAGTTGGGCCGCGCCTCCGGCCAGGGAAGAAGCGAAGCTTCTTTTATTCTCTCG
AGCTTGATTGGCCGGAAAGCCCCCCGGGCCGTAGGGCGCTCTTCGCGCTACCCTGCGCTCCGCGC
CATTCCTTGGCGCTTCGCTTTCCTTAACCTCTTCCCCTGCGCTCGGTCAAGAACTTCCAAACTTC
TGCCTCTCACTGGCGTCTTTTCTTGGATGGACTTCGCCGTTATTACCCAAAGGCTGTATTATCAC
TTTGAGATGTCGATTCGCTCCCTGTACCCAAGGAGATGGGTAATCGGTTCCCTCTGTCCTCGTCC
GGCTTGCGTTGTTCCAACCACCGGCAGGGAGCACCCCAGCGATCGCGCGCTGTGACGGAGTATTA
TTACACCGAAGGGAACTTTGATTCGCCAAACCCTGGTTCATCTCG
Found at i:249268 original size:16 final size:16
Alignment explanation
Indices: 249180--249528 Score: 173
Period size: 16 Copynumber: 21.9 Consensus size: 16
249170 ATATAGATGT
* *
249180 ATATATCTAGATATAG
1 ATATATATATATATAG
* *
249196 ATAGGTATAGATATATAC
1 ATA--TATATATATATAG
* *
249214 ATCTATATCTTATATA-
1 ATATATAT-ATATATAG
* * *
249230 ATATATAGATGTATAT
1 ATATATATATATATAG
*
249246 ATCTATAT-TATATAAG
1 ATATATATATATAT-AG
249262 ATATATATATAATATAG
1 ATATATATAT-ATATAG
*
249279 ATATATATCTATAT--
1 ATATATATATATATAG
* * * **
249293 ATGTATGTATGTACCG
1 ATATATATATATATAG
*
249309 ATATATATATGT-T--
1 ATATATATATATATAG
249322 ATATAT-TATATATAG
1 ATATATATATATATAG
**
249337 ATATATATATATATCT
1 ATATATATATATATAG
249353 ATATATA-ATATATA-
1 ATATATATATATATAG
* * *
249367 ACATATATATATCGGTAC
1 ATATATATATAT--ATAG
* *
249385 ATACATACATATATAG
1 ATATATATATATATAG
249401 ATATATATATATA-A-
1 ATATATATATATATAG
* *
249415 AGATATCTATATATAG
1 ATATATATATATATAG
* *
249431 ATATCTATATATACAG
1 ATATATATATATATAG
*
249447 ATATATCTATATATAG
1 ATATATATATATATAG
* *
249463 ATATTGTATAGATATATAT
1 ATA---TATATATATATAG
* * * *
249482 CTACATATAGATCTAG
1 ATATATATATATATAG
* **
249498 ATATCTATATAGGTAG
1 ATATATATATATATAG
*
249514 ATATATATCTATATA
1 ATATATATATATATA
249529 AAGATACACG
Statistics
Matches: 245, Mismatches: 66, Indels: 44
0.69 0.19 0.12
Matches are distributed among these distances:
12 4 0.02
13 7 0.03
14 26 0.11
15 27 0.11
16 125 0.51
17 20 0.08
18 24 0.10
19 12 0.05
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.42
Consensus pattern (16 bp):
ATATATATATATATAG
Left flanking sequence: Indices 248680 -- 249179
GCTCCAGCAACGTACCGTCGATGGTCTAACTGTCTGGTACCGGTGTCATGGAACCTGGGCGGGCT
ACTTAGAGCTTCGTGTATGCCATGATCCACAGATCAGGGCAGAGCGAGATATAATCCTACCTGTG
GCCGAAAAGGTTGTTTCGAAAAACTATGATCCAAAGATTCACAAGGATGGATTTCAGCCCCCGTC
TGAACTCTGTCAGACACCTCCAATGGATCCGAGAGGGTTGAGCTTTGTGAATGCGTAGAGTATAG
CCGCCGCCCACTAGGGCGGGCTGCTTTTAGCCACTCAGGCCCCTTCCCGGCTACTGGATTACTAC
TCCGGTGCTTTACCCCTACATTGGGCCGGTAGGGGGGTGGGCGGGTACTACGGACCCTCTGCCAT
CCATCGCAGAGCCCTGTAATTAGCTATGAAGGGGGAGAGGCGCTAAGCGCAGTGAATAATGAGAT
ATCTATGCTATCTATATCTAGATATCTATATCTAGATATAGATGT
Right flanking sequence: Indices 249529 -- 250028
AAGATACACGGATAGAGACCTATACGTATCTATGGCTTCGCCCCAAAGACTTCCCTTAGCCAGGA
AAAAGCGCTGAAAGTTGGGCCGCGCCTCCGGCCAGGGAAGAAGCGAAGCTTCTTTTATTCTCTCG
AGCTTGATTGGCCGGAAAGCCCCCCGGGCCGTAGGGCGCTCTTCGCGCTACCCTGCGCTCCGCGC
CATTCCTTGGCGCTTCGCTTTCCTTAACCTCTTCCCCTGCGCTCGGTCAAGAACTTCCAAACTTC
TGCCTCTCACTGGCGTCTTTTCTTGGATGGACTTCGCCGTTATTACCCAAAGGCTGTATTATCAC
TTTGAGATGTCGATTCGCTCCCTGTACCCAAGGAGATGGGTAATCGGTTCCCTCTGTCCTCGTCC
GGCTTGCGTTGTTCCAACCACCGGCAGGGAGCACCCCAGCGATCGCGCGCTGTGACGGAGTATTA
TTACACCGAAGGGAACTTTGATTCGCCAAACCCTGGTTCATCTCG
Found at i:251403 original size:5 final size:5
Alignment explanation
Indices: 251393--251427 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
251383 TGCAAACCCC
251393 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG
1 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG
251428 ACCCCGCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGAGG
Left flanking sequence: Indices 250893 -- 251392
ATAATTCCCAAATGACCTACCACAGTGCTCTCCGAACCGTACGTGATAGTCGCCCATCATACGGC
TCTCTAACTCTACTTAAATCGCATTGGATATATCCAAAGGTCCTAGCTTTCAGCCATTCCGCACG
CTGTCGGATACAACCGAGTCACTGGGAACGGTCCCAGTGTATCTTTTATTTATTGGCGAGTGAAC
CAGTATAGGCAAGTACTGGATAGATAGACCCCTTCCTTCCTGTTGTTGCCAGCGCTCGGGCCGAG
TAGAAAACGAAGCAGGTATGTGCGGGTGTTCTCCGAGCGCAGCGAGTTTAAGGGAGAGAGCACTA
GTGGCTTGGTGGGGTTCCGGAGTATCCCCCCCCGGGCTATTTATCCCGGACCGCCGGTCCGAGAA
AGCTGAAGGGGAACCCAAAGGGACCTAGGAAGAATCTTAGCTCTCTCTGAACCCCCCACCCTTCT
TGCCGCCAACCCGCAGAAGTTGGCAGAAGAACTTCTGCAAACCCC
Right flanking sequence: Indices 251428 -- 251927
ACCCCGCTTCCCGGGATAAATGGTGGGGCGCTATGCGCCACTCTTCCACTTAACTACGTTCGGTC
AAAGTAGAACCTCTAATGAACTGCCTACCGGAGGCGCATAGCGCCCCAGTAGCCCCTATAGGGCC
ACTTACCGGGGGTGGGTGGCCCGGTAACCCGGGGGGCCGGGGGGAGATTGCCAACTCCCTCCTCC
CTGCCACCTCTTCCCCTGCGCTCGGTCAAGGCACATACCTCCGAGAGACGTTTGGCGGGAGTTGG
CAATCTACCCAGTAGCCCCTCCCCCCGGGGAGGGGACCCTTCGGTCGAGTCAGCCTTCGAGCCAC
AAACCCTCTTCTTCCCCCGGCTCGTAAGACAAAGGCCGAAGTGGCGCAAAGCGCTGGGTGGGTAC
TAAAGGTCCCATGACTTCCAGCCGGGGATCTGGTTCACCGTTGGATCTCGCCGATACAGCCTATG
TTTTTGGTGTATTGAGATATCGCTTTGTTGATTGTACCCAGATAG
Found at i:256618 original size:4 final size:4
Alignment explanation
Indices: 256609--256655 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
256599 CGACTTCTTT
* * *
256609 AAAG AAAG AAAG AAAG AAAG GAAG AAAT AAATG -AAT AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA-G AAAG AAAG AAAG AAA
256656 TCAATCAAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.06
Consensus pattern (4 bp):
AAAG
Left flanking sequence: Indices 256109 -- 256608
GGTGGTATAGAGACCTTCGGCCTGTGGTACGCCCAGCCAAAGCTGTATTTGTATTTCGTAATTAC
GAATAGAACTTTAAGGCCAGATAAGCCTTATGAATAGAGTGAAGATAGCCGATCCTCTTTCTCTA
AATCCCCATCAGTTCGTGCTGCTGGTATATAGTAACGTAGATTGGGCTTCGGCCTTCAACTGCCG
GCCGGCCCCGCCCTGCCACCTCTTCCCCTGCGCTCGGAGAACTTACAACCTTCTGCACATACCTT
GGTGTGAATATGAGTGCCGTGTGACACTCCCGTTCAGAATCTGTGTCACCAGTCACAGAATAGTA
TGGGTTCATATATGGCTGCTTCCAAGATCCTTCTCAGAGTTTATAGTATGACCTTGTCTGTCCCG
TGATGAGATGATAGCCAGGGGTCGGAGTTCGCTTATCCCCGCCTTGCTCAGGGATACTCTGGCCC
ATAAGGTACTTGGTGGAACCCCAACTGTTATTACACGACTTCTTT
Right flanking sequence: Indices 256656 -- 257155
TCAATCAAGTCCATCCATTTCGCCCGTCTAGTGTTTGGCTGTAAGTGGCAGGGGCTGGAGACCGG
CCTGCCTGCCGGGAGCGCCTACAAAGTCCTTGTTCAAAGGTCCCTCCTGTCCGTCCGGGGGCCGA
AGGCCTGATTCGTTTGGTATATCTGGTCGGTTTTGTTGTGTACCCCGAAGCAATACCACGGTGGT
GCACGGAAGTTCCTACGACCGAGTGTTCCTAGCCCCTGTGAACATTTTAGTGAATGTATTAAAGA
GGGCCTCTCTAACCGGTGAAGTGGGTGTCCACTCACTTCGGCCATTCCTGGCTTGTCTCTGATAA
CGCCTATTCCGGGAGAAGTCGGGATAAGGGCACTTGAGGGATCCCTTAGGGACCCGGGAGAACGT
GTGGCGCTGGGTTGGGGTTTGGTGAACCAACTGGGGTCGCTCCTTTAGTTGAAGTATTGGGCTTC
TTTGCACCCTACCGTTGCCCTTAAAAAGTTGGCCCTTCGGAACCC
Found at i:259280 original size:14 final size:14
Alignment explanation
Indices: 259261--259287 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
259251 TCAAGCAACC
259261 AACAACCTTTTGCT
1 AACAACCTTTTGCT
259275 AACAACCTTTTGC
1 AACAACCTTTTGC
259288 AACCCTTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (14 bp):
AACAACCTTTTGCT
Left flanking sequence: Indices 258761 -- 259260
GTTGCAAGTTTCAAGTTGGTTGCAGAGCAGAGCAGAGCAGACAGTTGTTCCAAGGACCAAGAACT
TCTGCGGGTTGTTCTTCGCGCAGGGGAATAAGTTCAGGTGTGAACAAAAAAAGAGTGCGGGTTGT
AAAAAGCAAGCAAGTTCTTCTGCGCAGAACTTCTGCTTCTTTTCTTCTGCACACTTTTTGGACCG
GACCAAGAAAGGTTAGGTTGTTGAATCTTCGCGCAGCGAAGAACTTCTGGTTTCAAACAACCAGA
AGGTCACCTGCCTGCTTTTTGGGGAAGACCTCCAAAAAGCAGGCAGCAGCAGCAGAATAACTTCT
GCTGCTGCTTCTGAGCGCAGAAACTAACTTCTGCCTGCTTTTTGGACCAAGATCTTCTGCAAGCA
AGAAGTTCTTCGCGCAGAACTTCTGCACACTTTAAAGAAAGCAAGCAAGCAAAGTATTCCACTCC
AAACTTCTGCTTCGCGCAGCAGAAGATCTCTGCTTTCAAGCAACC
Right flanking sequence: Indices 259288 -- 259787
AACCCTTCTGCACACTTTTTTTTTTGGACCTCCGGGTTCCCAGGGAAGGGAAGGGAAGGGAAGGG
AAGGGGAGGGGAGGGAAGGGAAGGGAAGAGCTTCGCGCAGCGGGGAAGAGCAAGAAAGATCCCTT
TTTTTAGGACCAAGAAAGGGGCGGGCGGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAGCA
GAAGTTAGTTTCTTCTGCAAGAAAGCTTGCTCCTCCCAACTTTCGAACTTTCTTTCGAACTTTCT
TTCTTTTTGGGAAGAGCTTCTCCTTCACCCGCGCAGGGGGAAGGGGTGGAAAAGAACTTCTGCTT
TCAAACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACACCCCCACTCCTGCCACCTCTG
GAAACCCCTGCGCTCGGTCAAGAACTTCCAAACAACCTTCTGCAACCAGGGGAAGGGATGGACGG
ATTTCAAAAAAAGAGTGCGGGTTGTATTACCTTGACCGAGCGCAG
Found at i:259339 original size:5 final size:5
Alignment explanation
Indices: 259329--259380 Score: 86
Period size: 5 Copynumber: 10.4 Consensus size: 5
259319 CCGGGTTCCC
* *
259329 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGG AGGGG AGGGA AGGGA AGGGA
1 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA
259379 AG
1 AG
259381 AGCTTCGCGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (5 bp):
AGGGA
Left flanking sequence: Indices 258829 -- 259328
GCGGGTTGTTCTTCGCGCAGGGGAATAAGTTCAGGTGTGAACAAAAAAAGAGTGCGGGTTGTAAA
AAGCAAGCAAGTTCTTCTGCGCAGAACTTCTGCTTCTTTTCTTCTGCACACTTTTTGGACCGGAC
CAAGAAAGGTTAGGTTGTTGAATCTTCGCGCAGCGAAGAACTTCTGGTTTCAAACAACCAGAAGG
TCACCTGCCTGCTTTTTGGGGAAGACCTCCAAAAAGCAGGCAGCAGCAGCAGAATAACTTCTGCT
GCTGCTTCTGAGCGCAGAAACTAACTTCTGCCTGCTTTTTGGACCAAGATCTTCTGCAAGCAAGA
AGTTCTTCGCGCAGAACTTCTGCACACTTTAAAGAAAGCAAGCAAGCAAAGTATTCCACTCCAAA
CTTCTGCTTCGCGCAGCAGAAGATCTCTGCTTTCAAGCAACCAACAACCTTTTGCTAACAACCTT
TTGCAACCCTTCTGCACACTTTTTTTTTTGGACCTCCGGGTTCCC
Right flanking sequence: Indices 259381 -- 259880
AGCTTCGCGCAGCGGGGAAGAGCAAGAAAGATCCCTTTTTTTAGGACCAAGAAAGGGGCGGGCGG
AAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAGCAGAAGTTAGTTTCTTCTGCAAGAAAGCTT
GCTCCTCCCAACTTTCGAACTTTCTTTCGAACTTTCTTTCTTTTTGGGAAGAGCTTCTCCTTCAC
CCGCGCAGGGGGAAGGGGTGGAAAAGAACTTCTGCTTTCAAACAACCAGAAGGTCACCTGCCTGC
AACACCGCAAACAACACCCCCACTCCTGCCACCTCTGGAAACCCCTGCGCTCGGTCAAGAACTTC
CAAACAACCTTCTGCAACCAGGGGAAGGGATGGACGGATTTCAAAAAAAGAGTGCGGGTTGTATT
ACCTTGACCGAGCGCAGGGGAAGAGGAACAACCAGAAGGGGTTGCGTGTTGTTCTCCAAGCAGGT
GAACTTCTTTCTTGGGAACTTTTGGGTTGCTTGCGAAGGTTCCAA
Found at i:259539 original size:12 final size:12
Alignment explanation
Indices: 259522--259550 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
259512 CTCCTCCCAA
259522 CTTTCGAACTTT
1 CTTTCGAACTTT
259534 CTTTCGAACTTT
1 CTTTCGAACTTT
259546 CTTTC
1 CTTTC
259551 TTTTTGGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.28, G:0.07, T:0.52
Consensus pattern (12 bp):
CTTTCGAACTTT
Left flanking sequence: Indices 259022 -- 259521
GGTCACCTGCCTGCTTTTTGGGGAAGACCTCCAAAAAGCAGGCAGCAGCAGCAGAATAACTTCTG
CTGCTGCTTCTGAGCGCAGAAACTAACTTCTGCCTGCTTTTTGGACCAAGATCTTCTGCAAGCAA
GAAGTTCTTCGCGCAGAACTTCTGCACACTTTAAAGAAAGCAAGCAAGCAAAGTATTCCACTCCA
AACTTCTGCTTCGCGCAGCAGAAGATCTCTGCTTTCAAGCAACCAACAACCTTTTGCTAACAACC
TTTTGCAACCCTTCTGCACACTTTTTTTTTTGGACCTCCGGGTTCCCAGGGAAGGGAAGGGAAGG
GAAGGGAAGGGGAGGGGAGGGAAGGGAAGGGAAGAGCTTCGCGCAGCGGGGAAGAGCAAGAAAGA
TCCCTTTTTTTAGGACCAAGAAAGGGGCGGGCGGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGC
GCAGCAGAAGTTAGTTTCTTCTGCAAGAAAGCTTGCTCCTCCCAA
Right flanking sequence: Indices 259551 -- 260050
TTTTTGGGAAGAGCTTCTCCTTCACCCGCGCAGGGGGAAGGGGTGGAAAAGAACTTCTGCTTTCA
AACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACACCCCCACTCCTGCCACCTCTGGAA
ACCCCTGCGCTCGGTCAAGAACTTCCAAACAACCTTCTGCAACCAGGGGAAGGGATGGACGGATT
TCAAAAAAAGAGTGCGGGTTGTATTACCTTGACCGAGCGCAGGGGAAGAGGAACAACCAGAAGGG
GTTGCGTGTTGTTCTCCAAGCAGGTGAACTTCTTTCTTGGGAACTTTTGGGTTGCTTGCGAAGGT
TCCAACTAACAACCTTTTGCCACGAAATGACAAAGGCACGGCAACTTTTTGGGTTGCCGGAAACA
ACCCAACCCCTTTTACACAGTTTTCGAATGAGTGCCTGGCACGGTAGTGCCACTTCGAAACTTTT
CGGCAAAAGTTGAATCCGTGCCTAAACTAAAAGTGTGGCCGGTTG
Found at i:260090 original size:5 final size:5
Alignment explanation
Indices: 260080--260104 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
260070 GGCTGGCACG
260080 GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA
260105 AAGAACCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 259580 -- 260079
GCAGGGGGAAGGGGTGGAAAAGAACTTCTGCTTTCAAACAACCAGAAGGTCACCTGCCTGCAACA
CCGCAAACAACACCCCCACTCCTGCCACCTCTGGAAACCCCTGCGCTCGGTCAAGAACTTCCAAA
CAACCTTCTGCAACCAGGGGAAGGGATGGACGGATTTCAAAAAAAGAGTGCGGGTTGTATTACCT
TGACCGAGCGCAGGGGAAGAGGAACAACCAGAAGGGGTTGCGTGTTGTTCTCCAAGCAGGTGAAC
TTCTTTCTTGGGAACTTTTGGGTTGCTTGCGAAGGTTCCAACTAACAACCTTTTGCCACGAAATG
ACAAAGGCACGGCAACTTTTTGGGTTGCCGGAAACAACCCAACCCCTTTTACACAGTTTTCGAAT
GAGTGCCTGGCACGGTAGTGCCACTTCGAAACTTTTCGGCAAAAGTTGAATCCGTGCCTAAACTA
AAAGTGTGGCCGGTTGCTTCGAAATTACAAAGGTAGGCTGGCACG
Right flanking sequence: Indices 260105 -- 260604
AAGAACCTTCTGCAAGCAAGCAACAAACAACCGGTTCCCTTCCCCCCGCACGCACGAAAAGTATC
GCTTACAAAGGGCCAAGAAGGGGGACCGGTTGGTTGGCTGGTTCTTCGCGTAGCGAAGTTCTTGT
TGGACGGTTAAAAGTTGGGTTGGGAACCAGAAGCAACCTTCTTGGTTGCAGGGGAAAAGGTTGTT
TGGAAGTCCTTTACCGAGCGCAGGTCTTCCCCCAGAGGTGGCAGGAGTTCTTTACCGAGCGCAGG
TCTTCCCCCAGAGGTGGCAGGAGCTCTTTACCGAGCGCAGGGGTTTGAAGAGGTTAAGGGGAAGG
GGGAGGGGATCCAAGGGCTTCCCCCGCCCCGCCCCCCCAGAGGAATAGTTCTCCGGGGGGGAAGA
CACTCGGATCCCGGCTAGCACGGGGGAAGTCCTTGGATCCCACCCCGTACGGCAGCCTACTCCAG
AGGTATGTGCCTTGACCGAGCCAGGAGTTGGGGCTGCGGGGGAAG
Found at i:260353 original size:41 final size:41
Alignment explanation
Indices: 260308--260405 Score: 187
Period size: 41 Copynumber: 2.4 Consensus size: 41
260298 TTTGGAAGTC
*
260308 CTTTACCGAGCGCAGGTCTTCCCCCAGAGGTGGCAGGAGTT
1 CTTTACCGAGCGCAGGTCTTCCCCCAGAGGTGGCAGGAGCT
260349 CTTTACCGAGCGCAGGTCTTCCCCCAGAGGTGGCAGGAGCT
1 CTTTACCGAGCGCAGGTCTTCCCCCAGAGGTGGCAGGAGCT
260390 CTTTACCGAGCGCAGG
1 CTTTACCGAGCGCAGG
260406 GGTTTGAAGA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (41 bp):
CTTTACCGAGCGCAGGTCTTCCCCCAGAGGTGGCAGGAGCT
Left flanking sequence: Indices 259808 -- 260307
GGGGTTGCGTGTTGTTCTCCAAGCAGGTGAACTTCTTTCTTGGGAACTTTTGGGTTGCTTGCGAA
GGTTCCAACTAACAACCTTTTGCCACGAAATGACAAAGGCACGGCAACTTTTTGGGTTGCCGGAA
ACAACCCAACCCCTTTTACACAGTTTTCGAATGAGTGCCTGGCACGGTAGTGCCACTTCGAAACT
TTTCGGCAAAAGTTGAATCCGTGCCTAAACTAAAAGTGTGGCCGGTTGCTTCGAAATTACAAAGG
TAGGCTGGCACGGGGGAGGGGAGGGGAGGGGAGGGGAAAGAACCTTCTGCAAGCAAGCAACAAAC
AACCGGTTCCCTTCCCCCCGCACGCACGAAAAGTATCGCTTACAAAGGGCCAAGAAGGGGGACCG
GTTGGTTGGCTGGTTCTTCGCGTAGCGAAGTTCTTGTTGGACGGTTAAAAGTTGGGTTGGGAACC
AGAAGCAACCTTCTTGGTTGCAGGGGAAAAGGTTGTTTGGAAGTC
Right flanking sequence: Indices 260406 -- 260905
GGTTTGAAGAGGTTAAGGGGAAGGGGGAGGGGATCCAAGGGCTTCCCCCGCCCCGCCCCCCCAGA
GGAATAGTTCTCCGGGGGGGAAGACACTCGGATCCCGGCTAGCACGGGGGAAGTCCTTGGATCCC
ACCCCGTACGGCAGCCTACTCCAGAGGTATGTGCCTTGACCGAGCCAGGAGTTGGGGCTGCGGGG
GAAGCAGAAGAACTTCCCACCTCTCCCCCTGCGCTCGGTCAAGGTATGTGCCTTCTGCAACTGTA
TGTGCAGAAGGGTGTAAGTTCTCACTTCAGAGGAATATAAGAGAGAGCACCGCGAGGTTAAGGAA
GAGGGAAGTCCTTGGATACCGTTTACTTCCAGTCCACTCTCCCTTCCCCTGCTGCCACCTCGCAG
GGGAGAAGAGAAGGCCCTTCCCCTGCGCTCGGTAAAGAACTCCTGCCACCTCTGGGGGAAGACCT
GCGCTCGGTAAAGGACTCCTGCCACCCAAAAAGCAGCTTTGGATC
Found at i:262978 original size:50 final size:50
Alignment explanation
Indices: 262903--263017 Score: 221
Period size: 50 Copynumber: 2.3 Consensus size: 50
262893 AAAAAAGGTT
*
262903 CTTCGCGCAGCGAAGAACTTCTGCGGATTTCCAGAAGGTGTGAACTTCTG
1 CTTCGCGCAGCGAAGAACTTCTGCGGATTTACAGAAGGTGTGAACTTCTG
262953 CTTCGCGCAGCGAAGAACTTCTGCGGATTTACAGAAGGTGTGAACTTCTG
1 CTTCGCGCAGCGAAGAACTTCTGCGGATTTACAGAAGGTGTGAACTTCTG
263003 CTTCGCGCAGCGAAG
1 CTTCGCGCAGCGAAG
263018 TTCTTGTTGG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (50 bp):
CTTCGCGCAGCGAAGAACTTCTGCGGATTTACAGAAGGTGTGAACTTCTG
Left flanking sequence: Indices 262403 -- 262902
GTACTAACGGTAGATAATCGTATTGTTTAGAAGTACTTATGAAAACTCCATAAAGAAGCAGAATT
ATGGTGGCGTTAATAAGAAATATCTCTGGGAAAAGCGCTGAAAAATCATGCTCAAACATTTGGAA
GAATAAATAACAACTTTGGATTTTTCTAGGTTCTTGATTTCAATGGGAGTTAGGTGAAAACGGCC
AAGCGTTTTATGCTTGGTGGGGGCCGCTCCCGGGCCGGCCGGCCGGCCTTCAGGGTCCCGTTTAA
CCGGTACACTCGACCGTTTAGCCAGGGCTGGGCCGGTAGTGCCCAGGGGAAAAGGCCGTTTGAAT
GAGGGCCAGAAGGTTGGTTGCTATCCGTGCCGGAAATCCGAAAAAAAGAGTGCCAAAATTTCACA
GAAGAACTGCAGAAGTTCTTCTGCACACTTTAAAGCAAGCAAGCAAGTATCCCACTCCAATCCAA
TCCAAAAGGACCAAGACGGGTTGGTTGGCGGCAAAAAAAAAGGTT
Right flanking sequence: Indices 263018 -- 263517
TTCTTGTTGGGCCGGGTTGGCGGGTTAAAAGTTGGGTTGGGAACCAGAAGCAACCTTCTTGGTTG
CAGGGGAAAAGGTTGTTTGGAAGTTCTTGACCGAGCGCAGGGGGAGAGGAACTTCTGCGTTGTTC
TTCGCGCAGCGGAGTGAAGGAGTGTTGGTTGCAGAAGAGACTTCTGCTTCGCGCAGCGAAGCGAA
GGAAACTTTCCGGCCAGGCCACGCGCGCGCGCAAAGAATGAGTGCCACGAAGAATGAGGGCCTTG
CTTGCCAGAAGTGGCCCCCTTCTGCAAGCAAGCAAGTATTCCGGTCCAATACAAAAGTGTGCAGA
AGTCTCTTCGCTGCGCGAAGATGGAGGTCCTTGGGCCTTCCCCTTCTTTTCTTGCAGGGGAAAAT
AACTTCTGCTCTTCCCGGAGGGGAGGGGAGGGGAGGGGAGAACCCCTGCGCTCGGAAAACTTCTG
CTTCCCCTTCTTCGCACGGGGGAAGGGAAAGCTGCGCTCAGAAAG
Found at i:263981 original size:4 final size:4
Alignment explanation
Indices: 263972--264039 Score: 136
Period size: 4 Copynumber: 17.0 Consensus size: 4
263962 TTCACACTTT
263972 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
264020 TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC
264040 AGAAGGTTGG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 64 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 263472 -- 263971
GCTTCCCCTTCTTCGCACGGGGGAAGGGAAAGCTGCGCTCAGAAAGCAAGCGCAACCTTCTGCAC
ACCTTGGATCCCGACTGTTTAAGCGATTGAATTCGTGCCACGGGCAACTTCAGAAAAGCAGTTCA
TTCGTGCAATAGGGAAGGAGGGATAGTGGTTCCTTGGATCCCGACAACTGTTTCCATTCGTGCCA
CTTTTTTTTTAAAGTGGCACTCATTCTGTTCTGCTTTCATTCGTGCAAACTTCACTGTTTTCCCC
CGTGCCTACCTTTGTAATAATCCGTGCCTACCTTTGTAAGCGAAGTTGATTCGAGGGAATAAGGT
TGGTTGAAAGTTTGTTTGTGCCACTGAAATTACTTACAAAGGTAGGCGCCGTTGCACTTTTAAAG
GATTTTAACGGGCCCGTGCAAGCAAGCCTACCTTTGTGAACGTGATAGAAGTGTGGCAAGAATGA
GTGCCTTCGAAACAACCTTTTCGTGCGTGCAGAAGTTCACACTTT
Right flanking sequence: Indices 264040 -- 264539
AGAAGGTTGGTTCTCCGGCAACCCAAAAAGAACTTACTTTTTGGGTTGCCGGCTAGCACGGGGGA
AGGTAAAGCTGCGCTCAGAACTCTTAAGAAGTTGCAAGTTGAAATCCGTCCTTTGTCATTTCGAA
ACAACCAAGAATCCAATTCGTGCGTGCAGAAGTTAGTTATTTTTGGGTTATCCGCCTACCTTTGT
AACTTTTTGGGCTTGCGGTTGGTTGTTTCGGAGAAAAGGCACGAAAAGGTTGTTTCGAAAGCACT
CATTCTTGCCATTAAAAGTGGCACGAAGGCACGAACAACCAGCCCTTCCAAACACACACACCTTT
TGGCACGAATTAACAACAGTTTGCACGAATCCCCAGGCACGAATTAACAACAGTTTGCACGAATG
AAACAGCTTTTGCACGAATGAAACCTAAACTTTTAAGGGATCCAAGGACCCACTCCTTGGATCCG
TATCCCTTTTGCACGAATGAAACAGCTTTTGCGCGCCCTCTCCTA
Found at i:264392 original size:20 final size:20
Alignment explanation
Indices: 264367--264428 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
264357 ACACCTTTTG
264367 GCACGAATTAACAACAGTTT
1 GCACGAATTAACAACAGTTT
**
264387 GCACGAA-T--CCCCAG---
1 GCACGAATTAACAACAGTTT
264401 GCACGAATTAACAACAGTTT
1 GCACGAATTAACAACAGTTT
264421 GCACGAAT
1 GCACGAAT
264429 GAAACAGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
14 7 0.22
15 1 0.03
17 8 0.25
19 1 0.03
20 15 0.47
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.19
Consensus pattern (20 bp):
GCACGAATTAACAACAGTTT
Left flanking sequence: Indices 263867 -- 264366
TAACGGGCCCGTGCAAGCAAGCCTACCTTTGTGAACGTGATAGAAGTGTGGCAAGAATGAGTGCC
TTCGAAACAACCTTTTCGTGCGTGCAGAAGTTCACACTTTTTGCTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCAGAAGGTTGGTTCTCCGGCAAC
CCAAAAAGAACTTACTTTTTGGGTTGCCGGCTAGCACGGGGGAAGGTAAAGCTGCGCTCAGAACT
CTTAAGAAGTTGCAAGTTGAAATCCGTCCTTTGTCATTTCGAAACAACCAAGAATCCAATTCGTG
CGTGCAGAAGTTAGTTATTTTTGGGTTATCCGCCTACCTTTGTAACTTTTTGGGCTTGCGGTTGG
TTGTTTCGGAGAAAAGGCACGAAAAGGTTGTTTCGAAAGCACTCATTCTTGCCATTAAAAGTGGC
ACGAAGGCACGAACAACCAGCCCTTCCAAACACACACACCTTTTG
Right flanking sequence: Indices 264429 -- 264928
GAAACAGCTTTTGCACGAATGAAACCTAAACTTTTAAGGGATCCAAGGACCCACTCCTTGGATCC
GTATCCCTTTTGCACGAATGAAACAGCTTTTGCGCGCCCTCTCCTATTCCTCTTCCTCTGATTAG
AGAAGTTACCCAATGAGTGCCACTTTAATTAAAAGTGGCACGAAAGGTTGGTTGTTTAGCCGGGC
TTTGTTTGTTAGTCTTTGCTTCGCTCCGCCCAGTCAAAGATAACCTTCGAATGAAGGCAGGCCTG
TATCACCGAGTGAACGGACCTCTAGTCAGGGGACTACGGCACGGAAGCACAAGTGAAGGCCTTCC
ATCTTGATTCCGGAGGATCACCTCACTACCGAGCTGCCTACGCTACATGGCTTAGTTCATTGCCG
AACTAAGCTGCTTTGCGAAAGGAAAGGGAACTGCGATCCTCTCCGCCTGCCCTACAGGAGCGGAT
ACTATTGGTTACTAGTGAGATCTAGTTACTTCTATTTACACAAAC
Found at i:265086 original size:13 final size:13
Alignment explanation
Indices: 265068--265098 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
265058 GGTAGAAATC
*
265068 GGGATCCAAGGAG
1 GGGATCCAAGGAA
265081 GGGATCCAAGGAA
1 GGGATCCAAGGAA
265094 GGGAT
1 GGGAT
265099 TACGGGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.45, T:0.10
Consensus pattern (13 bp):
GGGATCCAAGGAA
Left flanking sequence: Indices 264568 -- 265067
CCAATGAGTGCCACTTTAATTAAAAGTGGCACGAAAGGTTGGTTGTTTAGCCGGGCTTTGTTTGT
TAGTCTTTGCTTCGCTCCGCCCAGTCAAAGATAACCTTCGAATGAAGGCAGGCCTGTATCACCGA
GTGAACGGACCTCTAGTCAGGGGACTACGGCACGGAAGCACAAGTGAAGGCCTTCCATCTTGATT
CCGGAGGATCACCTCACTACCGAGCTGCCTACGCTACATGGCTTAGTTCATTGCCGAACTAAGCT
GCTTTGCGAAAGGAAAGGGAACTGCGATCCTCTCCGCCTGCCCTACAGGAGCGGATACTATTGGT
TACTAGTGAGATCTAGTTACTTCTATTTACACAAACTCCGGGGACATCGCTACGTTTCGGTTGCG
CCCTCTCCCTGTCCTGCGGGTTAAGGTCGAGTGGATGGCCTTAAAGGTCTTCCCCGTGCGAGGGG
AATACCCGTCCGGGATTAAAGAGTGGAGGATGGCAGGTAGAAATC
Right flanking sequence: Indices 265099 -- 265598
TACGGGATTGCTTGCAATAATCCGATCTTTTTTAGTGGGATCCAAGTGGCCGGGGGTTGGGGCCC
CCACCTTGGATCCCAATCCCCCTCCACTTGGATCCCGTGTTTTTTGGCTAAACATCCGTGCCAAT
GAGAGGTTTTTGTTGGCCTGAAAGGTTGTTGATTCGTGCAAAGAATCTTTTCCTTCCCCCGCTGC
GCTCAGAAAGCTAGCTCTTTTTGTGGGCAAGATCTTCCTTTAAATCCGTGCCGAACTGCCGAACT
TTCAACGGCACTGGTTGTTTCGAAGACTGAGTGAGTGCCTTCGAAACAACCAGTGCCGTTGAAAG
TTCGGCCCAAAAAGAGCTAGCTTTCAAAGGTAGGCTTGCACGGGGGAAAGCCACAGTTTTCGAAA
CAACCAGTGCCGTGGCCACGAGATTACAAAGGTAGGCTGGCACGGGGGAAAGGTGTGAACAAAAA
AAGAGTGCGGGTTGTTTTTCGCAGCGGAGAAACTTCTGCTTTCAA
Found at i:265613 original size:12 final size:12
Alignment explanation
Indices: 265604--265644 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
265594 TTCAAACAAC
*
265604 CAACCAAACAAA
1 CAACCAACCAAA
265616 CAACCAACCAAA
1 CAACCAACCAAA
265628 CACACCAACC-AA
1 CA-ACCAACCAAA
265640 CAACC
1 CAACC
265645 TTCTACGTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 3 0.11
12 17 0.63
13 7 0.26
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (12 bp):
CAACCAACCAAA
Left flanking sequence: Indices 265104 -- 265603
GATTGCTTGCAATAATCCGATCTTTTTTAGTGGGATCCAAGTGGCCGGGGGTTGGGGCCCCCACC
TTGGATCCCAATCCCCCTCCACTTGGATCCCGTGTTTTTTGGCTAAACATCCGTGCCAATGAGAG
GTTTTTGTTGGCCTGAAAGGTTGTTGATTCGTGCAAAGAATCTTTTCCTTCCCCCGCTGCGCTCA
GAAAGCTAGCTCTTTTTGTGGGCAAGATCTTCCTTTAAATCCGTGCCGAACTGCCGAACTTTCAA
CGGCACTGGTTGTTTCGAAGACTGAGTGAGTGCCTTCGAAACAACCAGTGCCGTTGAAAGTTCGG
CCCAAAAAGAGCTAGCTTTCAAAGGTAGGCTTGCACGGGGGAAAGCCACAGTTTTCGAAACAACC
AGTGCCGTGGCCACGAGATTACAAAGGTAGGCTGGCACGGGGGAAAGGTGTGAACAAAAAAAGAG
TGCGGGTTGTTTTTCGCAGCGGAGAAACTTCTGCTTTCAAACAAC
Right flanking sequence: Indices 265645 -- 266144
TTCTACGTCCAAAAAGCAAGCAAGCTCTTCCCCCTTTTTTTAGGAAATCCGTCCCGAAAGTAGCA
GAAGTTTTCGCAGCGAAGCAGAAGATCTTGCACGAAGAAAAGGCCCGTATTCAACTGCTTGTAAA
AGTGGCGTCCCGCCTACCTTTGTAAGCGAATGAGTGCAGAAGGGTTGCCGCAGGCAGAAGTTGCT
TGCTTGCAGAAGGTTCTTTCCCCCGTGCCGTGCCTGGCACGGTAGCTGCGCGAAGCAGAAGTTGG
GTCGTCCCCCGTTGTGTAGCTGCGCTCAGAAAGCGCTTTTGGTTCAAAGCAGAAGTCGGTAGCTG
CGCTCAGAAAGCAAGCGCAACCTTCTGCACACCTTTGGGGAGGGGAAGGGCCTTCCCCCAACCGT
GGCCGAAGAGTTTCGCTTACAAAGGTCGGCTGGCACGGGGGAGGGGAGGGGAAAGAACCTTTTCC
CCTGCAAGCAAGCAAGCAAGCAACTTCTGCACTCATTCAGTTTTC
Found at i:265617 original size:16 final size:16
Alignment explanation
Indices: 265596--265640 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
265586 CTTCTGCTTT
265596 CAAACAACCAACCAAA
1 CAAACAACCAACCAAA
265612 CAAACAACCAACCAAA
1 CAAACAACCAACCAAA
*
265628 CACACCAACCAAC
1 CA-AACAACCAAC
265641 AACCTTCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.58, C:0.42, G:0.00, T:0.00
Consensus pattern (16 bp):
CAAACAACCAACCAAA
Left flanking sequence: Indices 265096 -- 265595
GATTACGGGATTGCTTGCAATAATCCGATCTTTTTTAGTGGGATCCAAGTGGCCGGGGGTTGGGG
CCCCCACCTTGGATCCCAATCCCCCTCCACTTGGATCCCGTGTTTTTTGGCTAAACATCCGTGCC
AATGAGAGGTTTTTGTTGGCCTGAAAGGTTGTTGATTCGTGCAAAGAATCTTTTCCTTCCCCCGC
TGCGCTCAGAAAGCTAGCTCTTTTTGTGGGCAAGATCTTCCTTTAAATCCGTGCCGAACTGCCGA
ACTTTCAACGGCACTGGTTGTTTCGAAGACTGAGTGAGTGCCTTCGAAACAACCAGTGCCGTTGA
AAGTTCGGCCCAAAAAGAGCTAGCTTTCAAAGGTAGGCTTGCACGGGGGAAAGCCACAGTTTTCG
AAACAACCAGTGCCGTGGCCACGAGATTACAAAGGTAGGCTGGCACGGGGGAAAGGTGTGAACAA
AAAAAGAGTGCGGGTTGTTTTTCGCAGCGGAGAAACTTCTGCTTT
Right flanking sequence: Indices 265641 -- 266140
AACCTTCTACGTCCAAAAAGCAAGCAAGCTCTTCCCCCTTTTTTTAGGAAATCCGTCCCGAAAGT
AGCAGAAGTTTTCGCAGCGAAGCAGAAGATCTTGCACGAAGAAAAGGCCCGTATTCAACTGCTTG
TAAAAGTGGCGTCCCGCCTACCTTTGTAAGCGAATGAGTGCAGAAGGGTTGCCGCAGGCAGAAGT
TGCTTGCTTGCAGAAGGTTCTTTCCCCCGTGCCGTGCCTGGCACGGTAGCTGCGCGAAGCAGAAG
TTGGGTCGTCCCCCGTTGTGTAGCTGCGCTCAGAAAGCGCTTTTGGTTCAAAGCAGAAGTCGGTA
GCTGCGCTCAGAAAGCAAGCGCAACCTTCTGCACACCTTTGGGGAGGGGAAGGGCCTTCCCCCAA
CCGTGGCCGAAGAGTTTCGCTTACAAAGGTCGGCTGGCACGGGGGAGGGGAGGGGAAAGAACCTT
TTCCCCTGCAAGCAAGCAAGCAAGCAACTTCTGCACTCATTCAGT
Found at i:267545 original size:14 final size:14
Alignment explanation
Indices: 267526--267558 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
267516 CCGGCAAGTC
267526 CCGGGGAACCCGGG
1 CCGGGGAACCCGGG
267540 CCGGGGAACCCGGG
1 CCGGGGAACCCGGG
267554 CCGGG
1 CCGGG
267559 CCGGCCCGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.12, C:0.36, G:0.52, T:0.00
Consensus pattern (14 bp):
CCGGGGAACCCGGG
Left flanking sequence: Indices 267026 -- 267525
TCTTGTTCTGCTCGGGACAGGGCTGGAAGATTGAACCTTGCCTCAAAGCAAAGGAAAGCGCATGT
GCCCCCCCAGTGGAGTATAATCTTGGTATACAGGAGTGGAAGGCTTAGTCGCTGCCGGAGAGAGA
AGTATGACAATCGCTCTTGAAAGAGCAGTGTTGTTCCCAACTCTCAACTCTCAAGAAAAGCCCGC
GTCGCATCTAAAAGTTAGTTCTAAGCCGCAGGCTAGTATCGAGCCCTCCCCATTATGACGTGTAG
AAATCGAAGTGGCTAAATAAAAAGGCTAAAGAAGCCGGGGCGCCAGCCATAGGAGTTGAGTTGAA
ACTTTTGGCCCAAGCCTCTATCTATGCCCCAGGGGACGCTGGCTCGAACTAATCACTATGCTTCA
CTGAAAGGCCCAGCCGAACCATCCACTCGACAGCTCATGCTTAAGCTTATCATCGCGCTCCTTCC
CCAGCGTATTTCCATCTCGGAACGGGTTCCCCGTCCCGGCAAGTC
Right flanking sequence: Indices 267559 -- 268058
CCGGCCCGTCCCGGGAGAAGCGGAAGACCATCAACGAAAGCGGGGCCTTCCCCCAGTGCTTACTC
GGTTCACCCATTAAAAGGAACCGGAGCGAGTGGATAATTGAAAAGCAGGGCTAAGAAGATGGCGG
CCCGCGGAGGAATTGTTTTGGCAAACACCACAACCCTACAAACAACCTTTTCCCCTGTGCACGTA
GCGCTTTCTTTTCAAGGACCCCGGGACGGGATAAATTGTAAACCTCCAAATAAATAGAGGGGGGA
CTTTCAAAACAAAACAAAAACAAAAGTAGTGGGGCAGGCCGGGGTTTAGCTATGATGCTAACCAG
CAGTTACAAGACAAAGGCGGGCTAGCATAGCGCCCGGACCGCTTTGCGCGTCTTCCCGGCCAAGC
CCGGCCAATTGGAAAGTCATTACCAGGATGGCTGCGCTAAAGCCCTGTGACCCCGACGGTCCGGC
TTTTACCTAGGAATAAAAGGAGCAAAGGCTTTCTTATGGCGGCCA
Found at i:268912 original size:5 final size:5
Alignment explanation
Indices: 268902--268954 Score: 106
Period size: 5 Copynumber: 10.6 Consensus size: 5
268892 CCGAGCACCG
268902 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
268952 GGG
1 GGG
268955 GCCCTTCTGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (5 bp):
GGGAA
Left flanking sequence: Indices 268402 -- 268901
AAAAAACACCAACCATCAAGATTAAGCTAAGTAATACCAATGAAAAGCCGCCCCTTCCCCGCTTG
CTTTCTGGGCGAAAGCAAAAAAAGCAGCTAGTCGTATATGAGGATGACCCTAGATACACGAGATT
GGACTACAGGCTACAGTCCTTCCACGACAGGGTATCCCAAGGCGGCAGCCTAGCGGCAACCCAAC
CAGGATCCCCGCTGCACCGGTCGATAATCTTGCGTGCGTGCGGGGTCACTTCTCTAATCAGAGGA
AGAGGAATAGGATAGGGCGCGCAAAAGGCTACGGAGGTATGTGCCTTGACCGAGCCAGGAGTTGG
GGCTGCGGGGGAAGCAGAAGAACTTCCCACCTCTTCCCCAGGTATGTGCCTTTACCGAGGGGTTC
TCCTCACAAACTTCAGAGGGATATAAGAGAGAGGAACGGCCCTGCGCTCGGTCAAGGTATGTGCC
TTCTGCAACTGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCACCG
Right flanking sequence: Indices 268955 -- 269454
GCCCTTCTGCGAGGTGGCAGGGAGAGTGGGACAACTTGGATCTCACGACAACTGTTTTGCAGTAA
TTCGAAACAACCAACCGCAAGGCAACTTTTATCACGAACTTTTGAGGCACATACCTTGACCGAGC
GCAGGGGTTCTCCGGGCCTTTTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGGGAGGTG
GCAGGGTTTTTTTGTTTTTTTTGTTTGTTTGTGCCACTTCTATCACGTTCACAAAGGTGTGAACA
AAAGAATATGAGCGCAGCGGGGAAAAGCAAGTAACTTCTGCACACAAAGTGTGGTGTTCTTGACG
GATTTCAAAAGTAAGTTCTGAGCGCAGCTACCGACTTCTGCTTTGCACGGCACGGATTAACAACA
GTTTGCTTGCACGAATGTTTAGCAACTTGGGTTCATTCGAAACAACCAACCTTAAAGGTAGGTTT
AAAGTTCGGCAAGCCACTAAAGTTTATCACGAACCCGCCACTTTA
Found at i:271379 original size:15 final size:15
Alignment explanation
Indices: 271359--271392 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
271349 TGCGCGGGGG
271359 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
271374 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
271389 GAAG
1 GAAG
271393 CAGAAGTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (15 bp):
GAAGGGGAAGAAGAA
Left flanking sequence: Indices 270859 -- 271358
CTCCAATTTAAAGTGTGCAGAAGATACTTCTGCTTCGCGCAGCGGGGAAAAGCAAGCAAGCTCGG
GGGAGGGGAAGAGATCCGAAAAAGATTAATTACAGAAGTTTGTTTGTTTTCGCAGCTACCGACTT
CTGCTTTGAGCCAAAAGCGCCAAAAGTTCTGAGCGCAGCTTTCCCTTCCCCCGTGCGAAGAAGGG
GAAGAAGTAGAACCGTTTGACGGATCTCAACACGCACGCACGCTTTAAGTGCCTGCCTGCCAGTC
CTGAGCGCAGCTACCGATTCCCCTTTGCACGGCAACTCTTATTTTACGGGGGAAGGGCCCTCTGC
AAGCAAGCAACTCCTGCCTGCCTGCCTGCCAGCGGGGAGGGCCTTCTGCACGAATTCGCTTACAG
AGGCACGGCGGGTTGCCGGAGAACCAACCTTCTGCAAGCAAGCAACCCCTGCCTGCCTGCGGGGA
GGGCCTTCTCTTCTGCACACCTGAACTTATTCCCCTGCGCGGGGG
Right flanking sequence: Indices 271393 -- 271892
CAGAAGTTCACGCAAGCAAACCTTCTTGGTCCTTGGAACCAACTTTCTTTAAAGTGTGGACTTAT
GCCGAGCCGAGCCGAGCCGAAAAGGTTGTTTCGAAACTTTGCCCCAACAACCAACCTTCTGCCGA
AAAGTTTCGAAGTTTGTGGCCGTGCCACTTCGTGTTAAAGTGTGGCAAGTAGGGATCCAAGGATT
TCCAACACGCACGCTTTTGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGGGGTTTCCCACTTCA
GAGGAATATAAGAGGGTGGCAGGAGTTAGTTTCAACCTTCTGGCCGTTCTTTGAACCACTCGGAA
CTCCTTCCCTGGCAAATACAGTTGTCGGGATCCAAGTTGTCCCACTCGTAACTCCTTCCCTCATC
CGCTTACAAAGGTAGGCACGGATAGCAACAAACAGCCCGCCCCCCCTGCGCACTCATTCGGAGTG
AATCCCGTTTCGTATATAGATGGGGTTCCGAAGTCATCGAACTTA
Found at i:271398 original size:15 final size:15
Alignment explanation
Indices: 271365--271398 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
271355 GGGGGAAGGG
**
271365 GAAGAAGAAGAAGGG
1 GAAGAAGAAGAAGCA
271380 GAAGAAGAAGAAGCA
1 GAAGAAGAAGAAGCA
271395 GAAG
1 GAAG
271399 TTCACGCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.41, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAGAAGCA
Left flanking sequence: Indices 270865 -- 271364
TTTAAAGTGTGCAGAAGATACTTCTGCTTCGCGCAGCGGGGAAAAGCAAGCAAGCTCGGGGGAGG
GGAAGAGATCCGAAAAAGATTAATTACAGAAGTTTGTTTGTTTTCGCAGCTACCGACTTCTGCTT
TGAGCCAAAAGCGCCAAAAGTTCTGAGCGCAGCTTTCCCTTCCCCCGTGCGAAGAAGGGGAAGAA
GTAGAACCGTTTGACGGATCTCAACACGCACGCACGCTTTAAGTGCCTGCCTGCCAGTCCTGAGC
GCAGCTACCGATTCCCCTTTGCACGGCAACTCTTATTTTACGGGGGAAGGGCCCTCTGCAAGCAA
GCAACTCCTGCCTGCCTGCCTGCCAGCGGGGAGGGCCTTCTGCACGAATTCGCTTACAGAGGCAC
GGCGGGTTGCCGGAGAACCAACCTTCTGCAAGCAAGCAACCCCTGCCTGCCTGCGGGGAGGGCCT
TCTCTTCTGCACACCTGAACTTATTCCCCTGCGCGGGGGGAAGGG
Right flanking sequence: Indices 271399 -- 271898
TTCACGCAAGCAAACCTTCTTGGTCCTTGGAACCAACTTTCTTTAAAGTGTGGACTTATGCCGAG
CCGAGCCGAGCCGAAAAGGTTGTTTCGAAACTTTGCCCCAACAACCAACCTTCTGCCGAAAAGTT
TCGAAGTTTGTGGCCGTGCCACTTCGTGTTAAAGTGTGGCAAGTAGGGATCCAAGGATTTCCAAC
ACGCACGCTTTTGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGGGGTTTCCCACTTCAGAGGAA
TATAAGAGGGTGGCAGGAGTTAGTTTCAACCTTCTGGCCGTTCTTTGAACCACTCGGAACTCCTT
CCCTGGCAAATACAGTTGTCGGGATCCAAGTTGTCCCACTCGTAACTCCTTCCCTCATCCGCTTA
CAAAGGTAGGCACGGATAGCAACAAACAGCCCGCCCCCCCTGCGCACTCATTCGGAGTGAATCCC
GTTTCGTATATAGATGGGGTTCCGAAGTCATCGAACTTAATAGTC
Found at i:271981 original size:4 final size:4
Alignment explanation
Indices: 271972--272013 Score: 75
Period size: 4 Copynumber: 10.2 Consensus size: 4
271962 AGCCCCACCC
271972 TTCT TTCT TTCT TTCT TTCT TTCT TTCCT TTCT TTCT TTCT T
1 TTCT TTCT TTCT TTCT TTCT TTCT TT-CT TTCT TTCT TTCT T
272014 AAAGTCCCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 33 0.89
5 4 0.11
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTCT
Left flanking sequence: Indices 271472 -- 271971
AGCCGAAAAGGTTGTTTCGAAACTTTGCCCCAACAACCAACCTTCTGCCGAAAAGTTTCGAAGTT
TGTGGCCGTGCCACTTCGTGTTAAAGTGTGGCAAGTAGGGATCCAAGGATTTCCAACACGCACGC
TTTTGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGGGGTTTCCCACTTCAGAGGAATATAAGAG
GGTGGCAGGAGTTAGTTTCAACCTTCTGGCCGTTCTTTGAACCACTCGGAACTCCTTCCCTGGCA
AATACAGTTGTCGGGATCCAAGTTGTCCCACTCGTAACTCCTTCCCTCATCCGCTTACAAAGGTA
GGCACGGATAGCAACAAACAGCCCGCCCCCCCTGCGCACTCATTCGGAGTGAATCCCGTTTCGTA
TATAGATGGGGTTCCGAAGTCATCGAACTTAATAGTCCCGGGGTTATGACTGGGGATTCCATAAG
GGGGCCGATGGCCCCTGCGGCAACCCCGACCTGGCAGCCCCACCC
Right flanking sequence: Indices 272014 -- 272513
AAAGTCCCTTTCGTCTAGAGGTTAGGACATCGTCTTTTCAGGTCGAAGACACGGGTTCGATTCCC
GTAGGGGATAACCGAAATGGCCTTGGCGCTTCTCTCGCGGTTTACCGGAGGAGCCGAAAGGATAA
ACTGCCAAGTGCCCTCGGCAATGAGGGAATGAGGGTTTACGGGGTTTTAAGGGGATTACGGGGGT
AGGCCAAACTGGCCGGGGCCCCCTACCGATCTCTGCCCCACCACCCCCCCCAAAAAAACTGTGCC
TTTACCGAGCGCAGGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCGCAGGGGTTCTCCTCTCCTC
TCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCGAGGAACCTTTACCCTGCGGGA
AGAGGGGAGCGAAGGGGAGTTTTACCGGGTTGTAAGTTGTGAGGAGCAACCGACACGTAGTGTCT
GGTGGCTTGATTTGATTACCTGTATCGGTGGATTGTATCCAAGGC
Found at i:272337 original size:5 final size:5
Alignment explanation
Indices: 272327--272381 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
272317 GCGCAGGGGT
272327 TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC
1 TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC
272377 TCTCC
1 TCTCC
272382 GAGGAACCTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (5 bp):
TCTCC
Left flanking sequence: Indices 271827 -- 272326
CCTGCGCACTCATTCGGAGTGAATCCCGTTTCGTATATAGATGGGGTTCCGAAGTCATCGAACTT
AATAGTCCCGGGGTTATGACTGGGGATTCCATAAGGGGGCCGATGGCCCCTGCGGCAACCCCGAC
CTGGCAGCCCCACCCTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTTCTTTCTTTCTTAAAGTCCC
TTTCGTCTAGAGGTTAGGACATCGTCTTTTCAGGTCGAAGACACGGGTTCGATTCCCGTAGGGGA
TAACCGAAATGGCCTTGGCGCTTCTCTCGCGGTTTACCGGAGGAGCCGAAAGGATAAACTGCCAA
GTGCCCTCGGCAATGAGGGAATGAGGGTTTACGGGGTTTTAAGGGGATTACGGGGGTAGGCCAAA
CTGGCCGGGGCCCCCTACCGATCTCTGCCCCACCACCCCCCCCAAAAAAACTGTGCCTTTACCGA
GCGCAGGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCGCAGGGGT
Right flanking sequence: Indices 272382 -- 272881
GAGGAACCTTTACCCTGCGGGAAGAGGGGAGCGAAGGGGAGTTTTACCGGGTTGTAAGTTGTGAG
GAGCAACCGACACGTAGTGTCTGGTGGCTTGATTTGATTACCTGTATCGGTGGATTGTATCCAAG
GCCGGGGACTTAGCCGGGATTGGATCGAGGGTGGGGAGGGGGCAGGGGTCCGGCAGGGGCTAAAC
GGAGGCAGAAGTTCTTGACCGAGCCAGAAGTTGGGGCTGCGAGAACACAACACAGAAGGGTGTTC
CTCCCCTCGCAGGTGAAGCCCTGCGCTCGGAGAACTTACACCCTTCTGCACATACGCAGAAGGGC
GCAGGCCTTCACCTGCGCTCGGAGAACTTACACCCTTCTGCACATACCTCGGGAAGGGAAGACCG
ACGTTTTATCCCGACAACTCGGATCCAAGAAGTTCCTCGGAGAACCCCTGCGCTCGGTCAAGGTA
TGTGCCTCCCGGTCTCCCAGGTCTCGATCTGATCTCGTCCCGGCC
Found at i:275386 original size:25 final size:26
Alignment explanation
Indices: 275346--275396 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
275336 CCCACCCCTC
275346 ACAATCAAAGGCCGAAGGCCAAACCT
1 ACAATCAAAGGCCGAAGGCCAAACCT
*
275372 ACAATC-AAGGCCGAAGGCCCAACCT
1 ACAATCAAAGGCCGAAGGCCAAACCT
275397 CTTGGAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.39, C:0.33, G:0.20, T:0.08
Consensus pattern (26 bp):
ACAATCAAAGGCCGAAGGCCAAACCT
Left flanking sequence: Indices 274846 -- 275345
GAGGGGAGGAGCCCACCCTTGGATCTCCTATCCTTTACCCACCCGAGCCCAATGGTTAGTTCTCC
GACCCGGACCACGAGTACGAAGGACGAGACCAGAGACCCGCCCGAGTCCTCCCGGAGGTACCTAT
ACCCTCCTTGCTTGCTTGCTTGGAAGTTCTTGCCCACGAGTTCGAAGGTGCTCCGGAACCCGAGT
CCAACTCTCGTCCGAGGTGGTATGACGAGTCCTTTGAACGAGTCAGGACCCTCAATCACTTTTGA
AGTTATCGGCCAACTCCTTCAAATTCACCCCGAGGACAGGCCCTTTATTCAATTAGGGGCACCTA
CCTCTACCCAGCAAGGCACATACCTTGACCGAGCGCAGGGGGAGGTTAAGGCACCTTGACCGAGC
GCAGGGGTTTGAAGAGGTTAAGGAACGGGCACCCAACCCCTAAGTTGGTTGTTGGCCCCCCCTTT
TTTCGGGCGGGGGACCGCCTACTTGAGGCCAAAGGCCCACCCCTC
Right flanking sequence: Indices 275397 -- 275896
CTTGGAAAGGGACATCGGAACTACACTCTTAGAAAAGTATGGCCCAACACTAGACATGGGTTGGG
GTCCTTGGATCCCACTCACTACTTAAAACCTTCACAAACTTTTGGCTCAGGAACCAGATCTTAAG
TAAACCCTGGAAGCCGGAGCTACGTTACGGTGGCCGGATCTCCGTCGGCTGCCCGGGAATCCGAC
ACTACTATCCTTCTTGGCCACTGACACTCGCTCCCCTTAACCTCTTCCCCGGTGCTCGGAGAACT
TCTGCACATACCTTACCCTCTTCCCCGGTGCTCGGTCAAGAACTTCCAAACAACCTCCTGCCTGC
CACCTCTGGAACCTGTGCTCGGTCAAGAACTCCCAAACAACCTTCTGCCTGCCACCTCGCAGAAG
TTACCCCTGCGCTCGGTCAAGAACTTCCAACCTTCTGCGTTGGCAGAAGTCCTTTTCCCGCTGCG
CTCAGATTTTTTTAGCTGGCACGGGGGAAGTTAACCTTCGCAAGC
Found at i:279334 original size:30 final size:30
Alignment explanation
Indices: 279256--279334 Score: 86
Period size: 34 Copynumber: 2.5 Consensus size: 30
279246 GAGATTGTCC
* *
279256 GCTCCCCTATCAATTGCTGATTGATTATCT
1 GCTCCCCTATCGATTGATGATTGATTATCT
*
279286 GCTCCCTTACTTATCGATTGATTATTGATTATCT
1 GCTCCC---C-TATCGATTGATGATTGATTATCT
*
279320 GCTCCCCCATCGATT
1 GCTCCCCTATCGATT
279335 AATGGCTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
30 13 0.32
31 1 0.02
33 1 0.02
34 26 0.63
ACGTcount: A:0.19, C:0.28, G:0.13, T:0.41
Consensus pattern (30 bp):
GCTCCCCTATCGATTGATGATTGATTATCT
Left flanking sequence: Indices 278756 -- 279255
TTCTCTTCCCCTGCGCTCGGTAAAGAACTCCTGCCACCTCTGGAACCCCCTCATTCTTCGTGGCC
GAAAAGTAAGTTTCAGTTTTCGAAACAACCTTAAAGGTTGTTCGGCACGGCACGGCAGAAGTTGC
GTGGCAAACTTCTGCCCCCGTGCCTACCTTAAAGGGTGTTCTTCGCTGCGAAAACTTCTGCTTAC
TTTTGGTTTCTTTGTAAGCGACAAACTTCTTGCTTGCAGGGGCCAGGTTGTTTGTTGCTTGCTTG
CAGAAGGCTCTTTCCCCCGTGCCTACCTTTGAAAGCTCTTTTTGGGCCGAACTCTCAACCAGAAC
CTTTTATGGTTGTTTCGGATGAGGCTTTTTTTTTTGCACTCATTCCCTTAACCTCGCTGCGCTCG
GTAAAGGTAATACCTTTGAAAAAGGCAATTCCCTGCTCCGCCCCCCCCCATTCAGTCTTTGCCCA
GAGTCTTATCACTCGAAACTGGGGGCCAGATGATTGAGATTGTCC
Right flanking sequence: Indices 279335 -- 279834
AATGGCTTCTCGCACCCTTATATATAGAGGTAAGAAGAATGACCTTACTTTCCCATCGATCGATT
GCTTCCCGGGAATGGAATCTATTATTCATTGATCGATTGAGAGAGGTAGATCGAAGGAGCTGAAA
GCGCATGAGATCCGGGGGAAGAGATCGAAAAAGAGGAGCTGAAAGCAAGCGCATGCATGAGATCG
AACCGGAGATCGAAGAAATGCGCTGAAAGCGCATGAGATCGAACCTCTCAGCCTTGCCTCTTCTT
GGCTACACGAACCCGCTCGGTCAGTGTGTTCAACAAGCATACTTACCCCGGTCCGTGCCTTCCGA
GCCAGCTTGGTCGGTGTGATCATGCCGGTGTGTGGTGTTCAAGCATACCTTCTCATCTGAGCTTG
GTCCATCCCTTGCTCAGCTCAGCTTGATCCATACGAAAGCCGGCCGCTCAGTCACAGTATGTTAA
AGCCTGCCGCTTAGTGACAGTGCGTTTGATCAAGCCGCCCGCCTT
Found at i:281788 original size:11 final size:14
Alignment explanation
Indices: 281755--281783 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
281745 TTCCAAACAA
281755 CCAACAACCTTTTG
1 CCAACAACCTTTTG
281769 CCAACAACCTTTTG
1 CCAACAACCTTTTG
281783 C
1 C
281784 AAACCAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.38, G:0.07, T:0.28
Consensus pattern (14 bp):
CCAACAACCTTTTG
Left flanking sequence: Indices 281255 -- 281754
TGAACTTCTGCTTCGCGCAGGGGAAGGAGTAAAGGTAGGCACGGATAGCAACTTTTCCCCTGCGC
ACGAAAAGGTGGCACGAAAGTTACTTTTCGTGCGTGCAGAAAGGGGCAAGAACTTCTGCTTCGCT
GCGCTCAGAACTTACTTACTTTCTTGGTCCGGGTAAGAGACTTCTGCTTCTGCCGCGCCGCAAAA
GGTTGCGGTGTTGCAGCCAGCAACCTGCCCAAGAAGTTTGTGTGAACTTCTGCTCTCTCTTATAT
TACTCTGAAGGTTGGTTGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTCAAGAACACCCTTCTG
CCTGCTTTTCCCGCTGCGCAGAAGAACTTGCTTTTTACAACCCGCACTCTTTTTTGCTTGCACGG
TAGGTTAAACCTTTAAATCCGTGCCTACCTGAACTTATTCCCCTGCGCGAAGATTCAACACGCCA
ACAAGAACTCCGCTGCGCGAAGAACACCCTTCTGGTTCCAAACAA
Right flanking sequence: Indices 281784 -- 282283
AAACCAAACTTCTGGTCCAACTTTTAAGCAGAAGTTTCTGCGCGAAGCAGAAGTTCCTTCTGGAG
GTCACACCTTCTTGGTCCTTTGTGAACGTGTGGCAAGAAACTAACTTTTCGGCAACGCAACTTTT
TGCTTGCTTTCTTGCAGAAGGTTCTTTCCCCTCCCCCGTGCCGTGCCAGCCTACCTTTGGGGCCC
TTCCCGTGGCCCTCATTCCTTTTAGGCACGGGGGAGGGGAAAGAACCTTCTGCAAGAAAGCAAGC
AAGCAAAAAGTTGCGTTGCCGAACAACCTTTAAGGTTGTTTCGAAACTTACAAAGGACCAAGAAG
GGTTGTTTGCTTGCGTGTTGAATCTTCGCGCAGCGAAGCAGAAGTTCACACAAACAACCCTTCTG
CCAAGAAGGTTGAATCTTCGCGCAGCGAAGCAGAAGTTCACACCTTTTGCGGATTTCAAAAAAAG
AGTGCAACTTCTGCGGGTTGGTTGTTGGGTTGGGTTGTTTCGCAG
Found at i:286549 original size:33 final size:33
Alignment explanation
Indices: 286512--286585 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
286502 ACATGTTCTT
*
286512 AGATTCTGTGTCCTCATGGGAAAGCCTTATTTC
1 AGATTCTGTGTCCTCATGGGAAAGCCTGATTTC
* *
286545 AGATTCCGTGTCCTCATGGGAAAGCCTGGTTTC
1 AGATTCTGTGTCCTCATGGGAAAGCCTGATTTC
*
286578 GGATTCTG
1 AGATTCTG
286586 CGTTATCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.34
Consensus pattern (33 bp):
AGATTCTGTGTCCTCATGGGAAAGCCTGATTTC
Left flanking sequence: Indices 286012 -- 286511
TCCGAAACGTACCTTATTCTGTCAATATCAAAAAGACCTTCTATGTCGCTCTAGAAGGGTTAGTC
ATATGTCGAGGTTTCTTAATATGCCATCGAAGAAATTGATAGGAGTGTCTAATGGGAATATACGA
GATCACCAACATAGAAGGCTTGCAGCTAAATCTGAATCAAAACGAAGGCTCTGTAAAGCCATTTG
CCAGGATATCAATCCTCCTAGTCGGGTACGGAGCAAAACTATGGAAAAGTGGTCCAGGTTGCCAA
GAAATAGTTCCGAAACACGGGTGAGAAACCGATGTATTTTTACTGGTCGCTCTCGTTCCGTATAT
AAGTTATTCCGTCTTTCTCGCATAGTCTTTCGTGAATTAGCCTCTAAAGGCTCTTTGATAGGCAT
TAACAAATCGTGCTGGTAGCCAATAATTAGCCAACAACTCAGCTTGGGGTGGCCCGGCCCCACCC
CCGGCCCGCCCCCGATCCTGCGTCCTCGCGGGCTTACATGTTCTT
Right flanking sequence: Indices 286586 -- 287085
CGTTATCATTATTCTCAGCCTCCATCGATTCTTTATAGATCTCTGCTGCAGCTCTTTCATGACGC
GCGGCTGCCCATCTGCACACACAGGTGTCATTATTGGCTCAGATAGCGGTGGTAGAGTATACTAC
TTGAAAAAAGCAGCCTTACCTGAACCTTCGGATTCATCGCAGGATGCACTAACAAGGCAAACTTT
TTTGTTAAAAGTTGCTTGCGGGAGTGTCTGAGCCACTAAGCGCCTTGCAGGACTTAGGAAAGCCC
CGCCCGACCGACCGATTATCTGCTGCCTGCCTGCCTGCTGCTGGCTTCGACCATCCTTTCAGCAT
CTACCGGGCAATCTATTGTCCCATTACGAGACTGACTCATTGAGGTGAGGGGCTGACACTCCCTA
ATGCTACTACATCTAAGTGTATTTACCATCACCAATCGGTCATATCTCTAGGGTCTTAGTACTGA
GTCGATATCCAAAACGATTCCTCCTATTCCACCGTCAAAGTTATC
Found at i:287587 original size:15 final size:16
Alignment explanation
Indices: 287562--287595 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
287552 CGAAACAACC
287562 TGGCAAGGCAACCTTT
1 TGGCAAGGCAACCTTT
287578 TGGC-AGGCAACCTTT
1 TGGCAAGGCAACCTTT
287593 TGG
1 TGG
287596 GTTGCGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (16 bp):
TGGCAAGGCAACCTTT
Left flanking sequence: Indices 287062 -- 287561
TCCTATTCCACCGTCAAAGTTATCCTATACCTCCGTACTCCGGCACCTATCGTACCCTCGGCACA
ACCTTCTGCACACTTTAAAGAAAGAAAGAAAGAAGGCAGCGCAAGGGAAGGGCGGTATCAAAAAC
CATGCATGGGTCTGGCTGGGTATAGGAACTGCTGTATCGATAGCTCGGATTGCCGTTTTTTGTTA
GAAGTATTCCGAGCAATCGAATAATTAGAACCATTCCGTTTTGAATGGCATTAGAGAACTTGAGC
CAAGCCCGGTCACAGGTTTAGTCTGGGGCCCCCCGAAAGAAAGCCAGCCCGAGTCTGGATGAAAA
CGTGCTGACGTTACTCGAACGAAATTTAGAAGTGCGATATCTTTATGAAAATACGCGTAGGAGAT
CCAAGGAGTCCCTGGCACCACTCCGTGCCTACCTTTGTAAGCGAATGAGTGAACTTTTTGGGGCT
TGTGGGTGTGGCACATCCGTGCCTACCTTTGTAAGCGAAACAACC
Right flanking sequence: Indices 287596 -- 288095
GTTGCGTGTTGTTCGGCAAGGCCAGAAGTCTCTTTTAACCCGGTTCAGTTGTGCCGGAGCGAGTG
GGACAACTTGGATCTCACGACAACTGTTTTTTTTGCGGCACTGTGCAAAAACCTTCGAAACAACC
TGGCAAGGCAACTTTTTGGCTTGGCAAAAAGTTCGGCAGAAGGTTGTTTGTTTGCCTTCGTGCCA
CTTCGAATCTTAACGAGCCACCGCACGGATGTGGGAAACAACCAACCGCCCAGCCCAAAAAGCAG
CTTTTTGGGCTGGGCGGTTGGTTGTTTCGTGCCACTGAAAGTTACTTACTTTTCGTGCGCAGGGG
AAAAGGTTGTTTGTATTCGTGCGGGTTGTCCGTGCCTACCTTTGTAATTTCGAAGCAACCGCAAG
CCCAAAAAGTTACAAAGGTAGGCTGGCACGGGGGAAAGAACCTTCTGCAAGCAACTTCTGCACTC
ATTCAGTTTTCGTGGGAATAAGGTAAAGTTGTTTGTTTGTGCCAC
Found at i:288931 original size:22 final size:22
Alignment explanation
Indices: 288906--288973 Score: 127
Period size: 22 Copynumber: 3.1 Consensus size: 22
288896 AGTGGACCGA
*
288906 ATTATTACAGAGGTAGGCACGG
1 ATTATTACAAAGGTAGGCACGG
288928 ATTATTACAAAGGTAGGCACGG
1 ATTATTACAAAGGTAGGCACGG
288950 ATTATTACAAAGGTAGGCACGG
1 ATTATTACAAAGGTAGGCACGG
288972 AT
1 AT
288974 AACCAACCCG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (22 bp):
ATTATTACAAAGGTAGGCACGG
Left flanking sequence: Indices 288406 -- 288905
CGCGAAGCAGAAGAACTGCAGAAGTTCTTCTGCAACCAACACCCCTGAACTTATTCCCCTGCGCG
AAGCAGAAGTTTCACGCAAGCAAACAACCCTTCTTGGTCCGGTCCTTTTGGAGGTCCAAAAAGCA
GAAGTTGCTTAGCTGCGCTCAGATTCTTTTGTTCACACCTTTGGGGAAGGGCCTTCACCCAAGAG
GTGGCAAAAGGTTGTTAGTTGGAACAAAAAGTGTGCAGAAGGTTGGTTGAAACAGAAGTTCGCTG
CGCTCAGCAGAAGTTCTTTCTAACCTTTCTTGGTCCAAAAAGAAGTTCAGAAGTTACCCCGCTGC
GCTCAGAAGATACTTCTGAACTTCTTTTTGGAAGCAGAAGTTTTGGTTCCAAAAAGTGTGAACTT
CTGCACGAGAAGGCAGTTAGTTTCTTGCCACACTTTTATCACGTTCACAAAGGTAGGCACGGATA
GCTGCCCAGGCACTCATTCTTGCTTGCTTGCCAGAAGTGGACCGA
Right flanking sequence: Indices 288974 -- 289473
AACCAACCCGCACGAATTAACAACAGTTTGCACGATCGCTATCGGGCGCAGATGAACTTTAAGGT
TGTTATTCGTGCGGTTCCAGAGGTGGCAGGAGTTTGGAAGTTCTTGACCGAGCGCAGGGGAAGGC
CCACAAACAACCAACCTTCAGAGGAATATAAGAGAGAGCAGAAGTTCTTTTCCCCTGCTACGAGT
GGGACAACTTGGATCCCAACTTTTAAGGTTGTTCTTTTTGCACTCATTCGTAGTGGCACGATCGC
TATCGGGCTTGCGCAGAAGGTTGTTATTCGTGCCAAAAGCTTTGAATGAGTAGGAGGGAGAGTGG
GACAACTTGGATCCCGACTTTAAGGTTCTCCGAAACAACCTTTTCGGCCACGAAGAACTTCGTGG
CACGATCTGAGTGCCACTTTTATCACGTTCACAAAGGTAGGCACGGAGTTAAAGGAAACAGCGGC
ACTCATTCAAAGTGGCAGTAATCCGTGCCTACCTTTGGGGAAGGG
Found at i:290225 original size:19 final size:18
Alignment explanation
Indices: 290187--290228 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
290177 CAACAACCCT
**
290187 CCTGCCACCTCTGGAACC
1 CCTGCCACCTCTCAAACC
290205 CCTGCCACCTCTTCAAACC
1 CCTGCCACCTC-TCAAACC
290224 CCTGC
1 CCTGC
290229 GCTCGGTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.17, C:0.52, G:0.12, T:0.19
Consensus pattern (18 bp):
CCTGCCACCTCTCAAACC
Left flanking sequence: Indices 289687 -- 290186
AATCTGTTCTGTCCTAAAAGGTGTTAAAAGTTGTCGGGATCCAAGGACCAAGAAGGGAACTTATG
CTTCGCGCAGAAACTTCTGCAAAGCAAAAAAGGTTGTTGGACCAGAAGTTTGTTTGGTTGGTTCT
TCGCGCAGCTACGCAGAAGTTACCTTCTGCGACGGATTTCCTGCAATTTGAGCGCAGCTTTCCCC
CGTGCGGGGGAAGAAGGAGAACCCTACAGGTTTGACGGATTTCCTGCCTGCAAAAAAGAGTGCGG
GTTGCAGAAGGGTGTTCTTTACCGAGCGCAGGGGTAACTTTTCCCCACAAACTTCAGAGGGATAT
AAGAGAGAGCAGAAGTTCACACAAACTTCTTGGGTTGCCTTCTGCGCAGGGGTTCTCCGGGGAAG
GGTAACTTCTGGCCGTTCTTTGAACCACTCTTTCCCCCGCAGGGGAAGCAGAAGGGTGTAAGTTC
TCGCAGCCCCAACTCCTGGCTCGGTCAAGAACTTCCAACAACCCT
Right flanking sequence: Indices 290229 -- 290728
GCTCGGTCAAGAACACCCTTCTGCAAACCTCATTGGCACTCGGTTAAATAACTTTTGGGCCTGAA
GAGTGTTGGTTGTTGCCCTCATTCGCTTACAAAGGTAGGCACGGATGGACCTATGAGTGCCTGGG
GATCCGTGCCTACCTTTGTAAGGAATGAGGGCCAATGAGTTTGTTTGGCGGGTTGTTTGTTGTTT
CCGTGCCGGAAATCCGAAAAAAAGAGTGCGGGTTGCAGAAGGGTGTTCTTTACCGAGCGCAGGGG
TAACTTTTCCCCACAAACTTCAGAGGGATATAAGAGAGAGCAGAAGTTCACACAAACTTCTTGGG
TTGCGTGTTGGAACTTCTGCGCAGCGGGGAAAAGCGAAGGAAACTTTTCGGCCCAAAAAGAGCTT
TCAAAGGTAGGCTGGCACGGGGGAAAGAACCTTCTGCAAGCAAGCAACAAACAACCTTCTGCCGA
AAAGTCTCTTGCCGCCTCACAAAGGTAGGCACGGATTTAACACCG
Found at i:291887 original size:5 final size:5
Alignment explanation
Indices: 291877--291906 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
291867 CTTCTAGGTA
*
291877 TTCCC TTCCC TTCCC CTCCC TTCCC TTCCC
1 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC
291907 AAGTGGGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (5 bp):
TTCCC
Left flanking sequence: Indices 291377 -- 291876
ATAGCCCATAAGTTTGTGGCAAGCCGTTTAAATGGGAACTACTTTGATTCTATTTGATTTGAAAA
AAGGCTACGCTACTATTTCAAAAGTCGCTAAAAGTAAGTACCCGGGATTGCAAGTGTCCCTCTTA
TATCCCTCTGAAGGGCTGAAGGGGGGCCGGGACTCCTGGCCAAGCCTTACGAGTGTCTTCCCCCG
TTGTGCAGGGGGGAAGTCCTTGGATACCGTAGTTGCCCCTTGGATCTCCTACGCCACTCTTAAAT
TCAATTCAATTCAATGAACTGGGGAGACCAAACAGCCTGCCGGGAGGATAGGTGAGGGGGGCTAG
CCCCAAAGTGCCTCATTTCGCCCGCCCGGCTTACAAAGTTGGGATCCAAGCACGGGGGAAAAAGT
TGGGACCCGACTGTCGGGAGAGTGTCCTTAAGGGGCATGTGGGAGAGTGGTTCCCCCTTGCCATG
GCGGGTGGGAGAGTGGACTTTTACGGTCGAGTGGACTTCTAGGTA
Right flanking sequence: Indices 291907 -- 292406
AAGTGGGCTTTGCGCGCGCGCAAAGATCGAGTGGACAAACGTTTAAGCAAACATCCGTGCAAGAA
CTTCTGCTTCGCTGCTTTCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGA
AAGAAAGTTGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAGCAAGCACTTTTT
GGAACCAAGAAGGTTGGGTTGTTTGTGCGCAGCGGGAACAACCCAACCTTCTTGTTGCTTCGCGC
AGCGAAGCGAAGGAGATCTTTCCTAAAAGGCGGCACTCCTTGGGTGGGGCAACGGGGGCGGGGCA
ACGGAGATCCAAGGAGCCCCTTGCCTCCGAGTTTGAGGTCTCCGTTCCGTACTCAGAGGAATATA
AGAGGGTGGGAGAGTGGACCGTCGGGGGACTGGGGAGGGGATCCGAGTTCGTTATCGTGTCTTTC
CCGGCAAGTTCCGTCAAACTTGGATCCAAAAGTTTAGCCCGCCCC
Found at i:291898 original size:15 final size:15
Alignment explanation
Indices: 291878--291906 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
291868 TTCTAGGTAT
291878 TCCCTTCCCTTCCCC
1 TCCCTTCCCTTCCCC
291893 TCCCTTCCCTTCCC
1 TCCCTTCCCTTCCC
291907 AAGTGGGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (15 bp):
TCCCTTCCCTTCCCC
Left flanking sequence: Indices 291378 -- 291877
TAGCCCATAAGTTTGTGGCAAGCCGTTTAAATGGGAACTACTTTGATTCTATTTGATTTGAAAAA
AGGCTACGCTACTATTTCAAAAGTCGCTAAAAGTAAGTACCCGGGATTGCAAGTGTCCCTCTTAT
ATCCCTCTGAAGGGCTGAAGGGGGGCCGGGACTCCTGGCCAAGCCTTACGAGTGTCTTCCCCCGT
TGTGCAGGGGGGAAGTCCTTGGATACCGTAGTTGCCCCTTGGATCTCCTACGCCACTCTTAAATT
CAATTCAATTCAATGAACTGGGGAGACCAAACAGCCTGCCGGGAGGATAGGTGAGGGGGGCTAGC
CCCAAAGTGCCTCATTTCGCCCGCCCGGCTTACAAAGTTGGGATCCAAGCACGGGGGAAAAAGTT
GGGACCCGACTGTCGGGAGAGTGTCCTTAAGGGGCATGTGGGAGAGTGGTTCCCCCTTGCCATGG
CGGGTGGGAGAGTGGACTTTTACGGTCGAGTGGACTTCTAGGTAT
Right flanking sequence: Indices 291907 -- 292406
AAGTGGGCTTTGCGCGCGCGCAAAGATCGAGTGGACAAACGTTTAAGCAAACATCCGTGCAAGAA
CTTCTGCTTCGCTGCTTTCGCAGCAGACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGA
AAGAAAGTTGGAACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAGCAAGCACTTTTT
GGAACCAAGAAGGTTGGGTTGTTTGTGCGCAGCGGGAACAACCCAACCTTCTTGTTGCTTCGCGC
AGCGAAGCGAAGGAGATCTTTCCTAAAAGGCGGCACTCCTTGGGTGGGGCAACGGGGGCGGGGCA
ACGGAGATCCAAGGAGCCCCTTGCCTCCGAGTTTGAGGTCTCCGTTCCGTACTCAGAGGAATATA
AGAGGGTGGGAGAGTGGACCGTCGGGGGACTGGGGAGGGGATCCGAGTTCGTTATCGTGTCTTTC
CCGGCAAGTTCCGTCAAACTTGGATCCAAAAGTTTAGCCCGCCCC
Found at i:292651 original size:4 final size:4
Alignment explanation
Indices: 292642--292715 Score: 148
Period size: 4 Copynumber: 18.5 Consensus size: 4
292632 GGACCAAGAA
292642 GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT
1 GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT GCTT
292690 GCTT GCTT GCTT GCTT GCTT GCTT GC
1 GCTT GCTT GCTT GCTT GCTT GCTT GC
292716 GCGGGTTAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 70 1.00
ACGTcount: A:0.00, C:0.26, G:0.26, T:0.49
Consensus pattern (4 bp):
GCTT
Left flanking sequence: Indices 292142 -- 292641
ACCCAACCTTCTTGTTGCTTCGCGCAGCGAAGCGAAGGAGATCTTTCCTAAAAGGCGGCACTCCT
TGGGTGGGGCAACGGGGGCGGGGCAACGGAGATCCAAGGAGCCCCTTGCCTCCGAGTTTGAGGTC
TCCGTTCCGTACTCAGAGGAATATAAGAGGGTGGGAGAGTGGACCGTCGGGGGACTGGGGAGGGG
ATCCGAGTTCGTTATCGTGTCTTTCCCGGCAAGTTCCGTCAAACTTGGATCCAAAAGTTTAGCCC
GCCCCCGTTGCCCCACCCAATGAGTGCCACCTTTTAGGTCAAAAGTTCTGAGCGCAGCAGACTTC
TGCTGCCAAACAATTCTTCTGCACACTTTAAAAAAAGTTGGAACCAAGAAGGTTGGGTTGTTTGT
GCGCAGCGGGAACAACCCAGAAGGGTGTTGTTGCTTCGCGCAGCAAGTGAAGGAACCAAAAGTAA
GTTCTGAGCGCAGCGGGGAAAAGCAAGCTCTTTTTGGACCAAGAA
Right flanking sequence: Indices 292716 -- 293215
GCGGGTTAAAAGTTGGGTTGGGCCAAAAGTAAGCAGAAGTTTTCGCAGCGAAGCGAAGGAAATCT
GTCCTTTCAGAGGAATGAGGGAACCACTCGACCGTAAAGGTCCACTCTCACGAACTCGGATCCCC
GTGATACCCAGTCCCCCTGGCCGGGGGAACCACTCTCCCACCCTTGCGTCCCGGTCCTTGGATAC
CCCCCCGCAAGGGGGAACCACTCTCCCACCCTTGCATAACGGGGGAAGACACTCGGGAAGGGAAG
GCCTTGTTAAAGAAGTCCACTCGACCTGCCGGTCAAAGTCCACTCTCCCGACAGTCTTTTGAGGC
CCTTGGATCCCTTCCCTGAGCCCTTCCGGCTCGTCCCCCGGACTCACAATAATCCTGTCCTCTAG
GAAGAAATGACAACATAATTAAAACGGTCATAACAATAACACTTATTTAACTCAGTGGTTAGAGT
ATCGCTCTCATACTAGGGCGGGCGAGAGTCATTGGTTCAAATCCA
Found at i:298833 original size:16 final size:16
Alignment explanation
Indices: 298812--298845 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
298802 ACACCTTGGA
*
298812 TTCGTGGCCCTCATTC
1 TTCGTGGCACTCATTC
298828 TTCGTGGCACTCATTC
1 TTCGTGGCACTCATTC
298844 TT
1 TT
298846 TGCAAGGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.32, G:0.18, T:0.41
Consensus pattern (16 bp):
TTCGTGGCACTCATTC
Left flanking sequence: Indices 298312 -- 298811
GCGAAACCGGCAGAAGTATCTTCTGCTTGCTTTTTGGAAGCAGAAGAACTTCTGCAAACCCCGCT
GCGCTCAGATTCAACCTTCTTGGCAGGCACTTCTGCCTCGCTGCGCGAAGAAGAACTTCTGCTTT
CAAACAACCAACCTTCTGCCTGCTTTTTGGACGGGGTCTTGCTGCGAAATTTTGGCATAAACTTC
TGCTTGCTTTTTGGAAGCAGAAGAGGCTTCTGCTTCGCTGCGCTCAGAACAACCCAACCCTTCTT
GCCGCCAACCCGCAGGCAGAAGTTCTTCGCTGCGAAAACTTCTGCTACTTTCTTTTTGGAAGCAG
AAGTTTTGGTTCCAACTTTCAACCTTCTGCACGAAAAGTTTCGCTTACAAAGGTAGGCTGGCACG
GGGGAAAACTCTTCGGCCCGGCCGTTGCGTTGCCGAAAAGTTAGTTTCTTGCCACACGTTCACAA
AGGTAGGCACGGACAACCCGCACGAATCCACAGGCACACCTTGGA
Right flanking sequence: Indices 298846 -- 299345
TGCAAGGAGGGAGAGTGGGACACCTTGGATCCCTACTCGTTTAACGGTTCTCCGGGCCGCCCACG
TGCCACTCCGAAGGAGTGCAACTTTTTGCGCTGCTTTCATTCGTGCAACAACCTTTGGGGCCAAT
GAGGTATGTGCCTTGACCGAGCGCAGGGGAAGAGGTTAAGGGAAGGAGAGAGAGTGGTTCAAAGC
AGAAGTCCTTCGCTGCGCTCAGAACTTTTGGAAATCCTTGGATCCCGACTTGCCACACTCTTTTA
GGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCACGGCAC
GGCACGGCACGGCACGGCACGGCACGGGGGAAAAGGCAATTCGTGCGGGTTGTCCGTGCCAGCCT
ACCTTTGTAAGCGAAACAACAACCCGCAGAGAGTTTGTTGCAACAGTTTTCGTGGCGGGTTGTTG
TTTCGCTTACAAAGGTAGGCTGGCACGGGGGAAAGAACCTTCTGC
Found at i:299116 original size:5 final size:5
Alignment explanation
Indices: 299106--299197 Score: 184
Period size: 5 Copynumber: 18.4 Consensus size: 5
299096 CACTCTTTTA
299106 GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC
1 GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC
299156 GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GG
1 GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GGCAC GG
299198 GGGAAAAGGC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 87 1.00
ACGTcount: A:0.20, C:0.39, G:0.41, T:0.00
Consensus pattern (5 bp):
GGCAC
Left flanking sequence: Indices 298606 -- 299105
AAAACTTCTGCTACTTTCTTTTTGGAAGCAGAAGTTTTGGTTCCAACTTTCAACCTTCTGCACGA
AAAGTTTCGCTTACAAAGGTAGGCTGGCACGGGGGAAAACTCTTCGGCCCGGCCGTTGCGTTGCC
GAAAAGTTAGTTTCTTGCCACACGTTCACAAAGGTAGGCACGGACAACCCGCACGAATCCACAGG
CACACCTTGGATTCGTGGCCCTCATTCTTCGTGGCACTCATTCTTTGCAAGGAGGGAGAGTGGGA
CACCTTGGATCCCTACTCGTTTAACGGTTCTCCGGGCCGCCCACGTGCCACTCCGAAGGAGTGCA
ACTTTTTGCGCTGCTTTCATTCGTGCAACAACCTTTGGGGCCAATGAGGTATGTGCCTTGACCGA
GCGCAGGGGAAGAGGTTAAGGGAAGGAGAGAGAGTGGTTCAAAGCAGAAGTCCTTCGCTGCGCTC
AGAACTTTTGGAAATCCTTGGATCCCGACTTGCCACACTCTTTTA
Right flanking sequence: Indices 299198 -- 299697
GGGAAAAGGCAATTCGTGCGGGTTGTCCGTGCCAGCCTACCTTTGTAAGCGAAACAACAACCCGC
AGAGAGTTTGTTGCAACAGTTTTCGTGGCGGGTTGTTGTTTCGCTTACAAAGGTAGGCTGGCACG
GGGGAAAGAACCTTCTGCAAGCAACTTCTGCACTCATTCAGTTTTCGAAACAACCTTTTCGGCCA
CGAAAACTGTGGCAACAAACTCTCTGCCGAAAAGTTAGTTTCTTGCCACACGTTCACAAAGGTAG
GCACGGATAACCCGCACGAATTAACAGTTTGCACGAATTCAAGTAACAGCGGCACTTCGTGCCAC
TATAAAAGTGGCCCTCAGACTTTCCTCCTCAGAGTGCGGAATAGTTCTCCCTTTATTATCCCGGC
AAGAGGGGGACTCCTTAACGGTAGTGCCACTATGGATGAGTGCCGCTGTTACTTGAATTCGTGCA
AACAAAAAGGGGCAACTTTTAAGAAGGGCTGCAGTAATCCGTGCC
Found at i:301213 original size:5 final size:5
Alignment explanation
Indices: 301203--301260 Score: 116
Period size: 5 Copynumber: 11.6 Consensus size: 5
301193 AAAAAATGCG
301203 CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA
1 CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA
301253 CCCAA CCC
1 CCCAA CCC
301261 TTCTGCACAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 53 1.00
ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCAA
Left flanking sequence: Indices 300703 -- 301202
ACTTTTGGTTGCCTTGCCAGGTTGTTTCGCTTACAAAGGTAGGCACGGAGGGAAGGAGGGAGAGT
GGGTCTTTGGATCCCGACTCGTTTAACGGTTTGAAGTCGGGCAAAAAAAACAGTTGTGGGGGAAG
ACACCTTGGATCCCGACGGGAGCCAGGCAACCTGGCAAATACAGTTGTCGGGATCCAAGACCCAC
GACTTGGATCCGGCACTGCACTCATTCGAAAACTGTGGCTTTCATTCGAAACTTTTCGGCAACGG
GCCAACCAAACAACACCCCAAAAAGTGGCCGTGCCTTTGTCATTTCGAAACTTTTCGTGCAGAAG
GGTTGTTGAAAGTTGGTTGCAGAGCAGACAGTTGTTCCAAGGTGTGCAGAAGGGTTGCAAAAGGT
TGTTGGTTGTTTGAATCTGAGCGCAGCTACCGTGCCAGGGGAATACCTCCATCTTCGCGCAGAAA
CTAACTTCTGCACACTTTAAAGAAAGGGAACTCCAAAAAAATGCG
Right flanking sequence: Indices 301261 -- 301760
TTCTGCACACTTTTTTTTTGGACCAAGAACTTACTTTCTTCTGCAAGAAGTTATTCGCGCAGCAG
ACTTCTGCTGCCAAACAATTCTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCACTCCAAAC
TTCTGCTTCGCGCAGCAGACTTCTGCTGCTTTCAACAACCCAAACAACCAACCTTCTGCACACTT
TTTGGAACCAAGAAAGGTTGTTTGTGCGCAGAAGTTTGTTGTGTTGTGGGGAATTGGTTGTTTGT
TTGTTTGGGATGTTGGGTGGTTTGTTGCTTCGCGCAGCGGGGAAAAGTAAGTTCTTTTTGGACGG
ATCTCAAATAAATCTGAGTGCAGCGAAGCAGAAGTTTCAACCAACCGCCAACCCAACCCAACAAC
CCACCCTTCTGCACACTTTTTGTTCCAACTAACAACCTTTTGCCACGGTTGGGGGAAGGCCCTTC
CCCTCCCCAAAGGTGTGAACAAAAGAATCTGAGCGCAGCTTTCCC
Found at i:302011 original size:44 final size:44
Alignment explanation
Indices: 301961--302073 Score: 208
Period size: 44 Copynumber: 2.6 Consensus size: 44
301951 CAAAAGAATA
* *
301961 TGAGCGCAGGGGAATAAGTTCAGGTTCACACCAAAATAAAGTTC
1 TGAGCGCAGGGGAATAAGTTCAGGTTCACACCAAAAGAAAGCTC
302005 TGAGCGCAGGGGAATAAGTTCAGGTTCACACCAAAAGAAAGCTC
1 TGAGCGCAGGGGAATAAGTTCAGGTTCACACCAAAAGAAAGCTC
302049 TGAGCGCAGGGGAATAAGTTCAGGT
1 TGAGCGCAGGGGAATAAGTTCAGGT
302074 GTGCCACTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (44 bp):
TGAGCGCAGGGGAATAAGTTCAGGTTCACACCAAAAGAAAGCTC
Left flanking sequence: Indices 301461 -- 301960
AACCAAGAAAGGTTGTTTGTGCGCAGAAGTTTGTTGTGTTGTGGGGAATTGGTTGTTTGTTTGTT
TGGGATGTTGGGTGGTTTGTTGCTTCGCGCAGCGGGGAAAAGTAAGTTCTTTTTGGACGGATCTC
AAATAAATCTGAGTGCAGCGAAGCAGAAGTTTCAACCAACCGCCAACCCAACCCAACAACCCACC
CTTCTGCACACTTTTTGTTCCAACTAACAACCTTTTGCCACGGTTGGGGGAAGGCCCTTCCCCTC
CCCAAAGGTGTGAACAAAAGAATCTGAGCGCAGCTTTCCCCCGTGCCAGGCACGGCATGGGGTTT
AGAAAGAACCTTCTGCAAGCAAGCAACTTCTGCCTGCCTGCGGGGAGGACCTTCTGCACTCATGT
TGCTTACAAAGGACGGATTTCCAAAAGCGCTTTCTGAGCGCAGCGAAGAACACCCTTTAAGGTAG
GCACGGATTTAAAGCCACCGGATCCAAGGTGTGAACAAAAGAATA
Right flanking sequence: Indices 302074 -- 302573
GTGCCACTTCGTGATAAAAAGTTGTGGCCCAGTGGCACGAATGAAAGCAAAAAGTAGGGATCCAA
GACCCACTCTCCGCATAAGTTCTCTTCCCCTGCGCTCGGTCAAGAACTTCCAACCTTCCTTCTGC
CGAAAAGTCTCCCCTCCCAAAAAGTTGCCGGTTCAAACAACCTTTTCCCCTGGGCACGAAGGACC
GCCCATATCCGTGCCAGCCTACCTTTGTAAGCGAAACAACCTGGCAAGGCAACCAAAAGTTGCTT
GGCAACCTTTTGGGTTGCGTGTTGTTCGGCAAGGCAACTTGGCCTACCTTTGTAAGCGAATTCGG
GCCAATGAGTACAACGGCCGGGCCGAAGAGTTTTCCCCCGTGCCTACCTTTGTAAACGATAGGAA
CTTACAAACGCCACTGAAATTACTTACAAAGGTAGGCTGGCACGGATAACAACCTTTAAGGAACG
AAGTGGCACGAATCCAGGGATCCGTGCCTTCGCTTCGCTGCGAGA
Found at i:303261 original size:13 final size:13
Alignment explanation
Indices: 303243--303272 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
303233 TGCCTGCTTT
303243 CCTGGCAAGCCTG
1 CCTGGCAAGCCTG
303256 CCTGGCAAGCCTG
1 CCTGGCAAGCCTG
303269 CCTG
1 CCTG
303273 CCTGGGTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.40, G:0.30, T:0.17
Consensus pattern (13 bp):
CCTGGCAAGCCTG
Left flanking sequence: Indices 302743 -- 303242
ATGCCTGCTACCTCCCGCTGCGAAACCGGCACTCTTTTTTTGTAGGTGTGAAACTAACCTAAAAG
GTGTTAAAAGTTGTCGGGATCCAAGGTGTACCACTCTCCCTCCTTCCCTCATTCGCTTACAAAGG
TAGGCACGGATTCAAGTAACAGCGGCGCGGCACGAAAAGTTTCGCTTACAAAGGTAGGCTGGCAC
GGGGGCAGAAGTTTGCCACGCCAAAACAAGTTGCACTCATTGGGCTGGCTTTACTGCCAGGGGGA
AGGGCTGCCTGCCGGGGGCAAATTGATCGCTGCTACGCCCTTCCCTGGCACGCACGATAAATAAG
CAGTGCTCTTTATTGACCTTCCCTGGGCCAGGCAGGCAGCACCGATAAGCAGTGCTCTTTCTTTT
CCTTCCCTCCCCATAAAGCAGCAGCCAGCTTACCGAGAAGTACCTTCCCTTCCCACAACGAGCGA
GAGGGATCCAAGTCTGGGGGTAAGCAAGCAAAACTTGCCTGCTTT
Right flanking sequence: Indices 303273 -- 303772
CCTGGGTGGCCAACTAAAGCTATCACGTAAATAGAAAGGCAGATGCGTGGGTGGTTAGGAATTCT
CCCTTTCTATTAAAAAAGATAATTTCGATTGTATTTTGGCCTGCCTGGCCTGCCGCCTGCCTGCC
TGCCGCCTGCCTAAATAGTTGTTGATTCTCATTCCATCTGATCCCATTGAACCAATCCTATCGAA
ATGAGGATTCAAGTTATCGTTATAGGATGGTAGCTTTGATTTGACTCGCCTATCTGAGGTGCTAT
GCGAAGGTTATACCTCCTTCTATTAAAGCTAGTTTCTCAAACCAACGATTACTGGTCATCACGGA
AGCAGAAGAGGGAGAAAGACGTAGCCGACCGCGAAAGAAGCGCAAGAGGAGAATGAGGAAGGAAG
TCAGTGGAACGAACCTCACTCCGAAATATGGTAGATAGAAGCAAACAGCTGATATCTCTCCAAAG
ATAGCCAGCAGGCAACGCAGGAGAGTGGATAAGATCAATCTTGTC
Found at i:303399 original size:4 final size:4
Alignment explanation
Indices: 303376--303414 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
303366 TTGTATTTTG
303376 GCCT GCCT GGCCT GCC- GCCT GCCT GCCT GCC- GCCT GCCT
1 GCCT GCCT -GCCT GCCT GCCT GCCT GCCT GCCT GCCT GCCT
303415 AAATAGTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 6 0.19
4 22 0.69
5 4 0.12
ACGTcount: A:0.00, C:0.51, G:0.28, T:0.21
Consensus pattern (4 bp):
GCCT
Left flanking sequence: Indices 302876 -- 303375
GCACGGATTCAAGTAACAGCGGCGCGGCACGAAAAGTTTCGCTTACAAAGGTAGGCTGGCACGGG
GGCAGAAGTTTGCCACGCCAAAACAAGTTGCACTCATTGGGCTGGCTTTACTGCCAGGGGGAAGG
GCTGCCTGCCGGGGGCAAATTGATCGCTGCTACGCCCTTCCCTGGCACGCACGATAAATAAGCAG
TGCTCTTTATTGACCTTCCCTGGGCCAGGCAGGCAGCACCGATAAGCAGTGCTCTTTCTTTTCCT
TCCCTCCCCATAAAGCAGCAGCCAGCTTACCGAGAAGTACCTTCCCTTCCCACAACGAGCGAGAG
GGATCCAAGTCTGGGGGTAAGCAAGCAAAACTTGCCTGCTTTCCTGGCAAGCCTGCCTGGCAAGC
CTGCCTGCCTGGGTGGCCAACTAAAGCTATCACGTAAATAGAAAGGCAGATGCGTGGGTGGTTAG
GAATTCTCCCTTTCTATTAAAAAAGATAATTTCGATTGTATTTTG
Right flanking sequence: Indices 303415 -- 303914
AAATAGTTGTTGATTCTCATTCCATCTGATCCCATTGAACCAATCCTATCGAAATGAGGATTCAA
GTTATCGTTATAGGATGGTAGCTTTGATTTGACTCGCCTATCTGAGGTGCTATGCGAAGGTTATA
CCTCCTTCTATTAAAGCTAGTTTCTCAAACCAACGATTACTGGTCATCACGGAAGCAGAAGAGGG
AGAAAGACGTAGCCGACCGCGAAAGAAGCGCAAGAGGAGAATGAGGAAGGAAGTCAGTGGAACGA
ACCTCACTCCGAAATATGGTAGATAGAAGCAAACAGCTGATATCTCTCCAAAGATAGCCAGCAGG
CAACGCAGGAGAGTGGATAAGATCAATCTTGTCTGTGACGGAGACTCCCCGCCACTTCCTTCACG
TAGCTGCGCGAAGAACACCCTGCCACCTCTGGGGGAAGACCTGCGCTCGGTCAAGAACTTCCAAA
CAACCTTTTCCCCTGCAACCAAGGGGGAAAGGTTTACCTTCTGGT
Found at i:303405 original size:15 final size:16
Alignment explanation
Indices: 303376--303414 Score: 71
Period size: 15 Copynumber: 2.5 Consensus size: 16
303366 TTGTATTTTG
303376 GCCTGCCTGGCCTGCC
1 GCCTGCCTGGCCTGCC
303392 GCCTGCCT-GCCTGCC
1 GCCTGCCTGGCCTGCC
303407 GCCTGCCT
1 GCCTGCCT
303415 AAATAGTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.00, C:0.51, G:0.28, T:0.21
Consensus pattern (16 bp):
GCCTGCCTGGCCTGCC
Left flanking sequence: Indices 302876 -- 303375
GCACGGATTCAAGTAACAGCGGCGCGGCACGAAAAGTTTCGCTTACAAAGGTAGGCTGGCACGGG
GGCAGAAGTTTGCCACGCCAAAACAAGTTGCACTCATTGGGCTGGCTTTACTGCCAGGGGGAAGG
GCTGCCTGCCGGGGGCAAATTGATCGCTGCTACGCCCTTCCCTGGCACGCACGATAAATAAGCAG
TGCTCTTTATTGACCTTCCCTGGGCCAGGCAGGCAGCACCGATAAGCAGTGCTCTTTCTTTTCCT
TCCCTCCCCATAAAGCAGCAGCCAGCTTACCGAGAAGTACCTTCCCTTCCCACAACGAGCGAGAG
GGATCCAAGTCTGGGGGTAAGCAAGCAAAACTTGCCTGCTTTCCTGGCAAGCCTGCCTGGCAAGC
CTGCCTGCCTGGGTGGCCAACTAAAGCTATCACGTAAATAGAAAGGCAGATGCGTGGGTGGTTAG
GAATTCTCCCTTTCTATTAAAAAAGATAATTTCGATTGTATTTTG
Right flanking sequence: Indices 303415 -- 303914
AAATAGTTGTTGATTCTCATTCCATCTGATCCCATTGAACCAATCCTATCGAAATGAGGATTCAA
GTTATCGTTATAGGATGGTAGCTTTGATTTGACTCGCCTATCTGAGGTGCTATGCGAAGGTTATA
CCTCCTTCTATTAAAGCTAGTTTCTCAAACCAACGATTACTGGTCATCACGGAAGCAGAAGAGGG
AGAAAGACGTAGCCGACCGCGAAAGAAGCGCAAGAGGAGAATGAGGAAGGAAGTCAGTGGAACGA
ACCTCACTCCGAAATATGGTAGATAGAAGCAAACAGCTGATATCTCTCCAAAGATAGCCAGCAGG
CAACGCAGGAGAGTGGATAAGATCAATCTTGTCTGTGACGGAGACTCCCCGCCACTTCCTTCACG
TAGCTGCGCGAAGAACACCCTGCCACCTCTGGGGGAAGACCTGCGCTCGGTCAAGAACTTCCAAA
CAACCTTTTCCCCTGCAACCAAGGGGGAAAGGTTTACCTTCTGGT
Found at i:311179 original size:5 final size:5
Alignment explanation
Indices: 311169--311255 Score: 129
Period size: 5 Copynumber: 17.2 Consensus size: 5
311159 GCGCGCATCT
*
311169 TTCCC TTCCC TTCCC TTCCA TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC
1 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC
***
311219 TTCCC TGGAAC TTCCC TTCCC TTCCC TTCCC TTCCC T
1 TTCCC T-TCCC TTCCC TTCCC TTCCC TTCCC TTCCC T
311256 GGAACTTCCC
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
5 71 0.97
6 2 0.03
ACGTcount: A:0.03, C:0.55, G:0.02, T:0.39
Consensus pattern (5 bp):
TTCCC
Left flanking sequence: Indices 310669 -- 311168
AAAACAAACTTCTGCACATACGCAGAAGGCACATACCTTGACCGAGCGCAGGGGGGAATAGGTGG
GAAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTCAAGGCACATACCTTGGAGAGG
CTAGGCGTGAAGAAGCCAGCCTTGGTTCGTTGATGAACGAGTAAGCCTTCGCTCTCTTAATCCGG
CTCGAGGCCCGTAGCGCGTAGCGCTTTATTCTGTCCCGGTTGTCTGACAGGGACAAGATAACCGC
CGGGTTGGACACAAGGTCGGTCGGTCTTTGAAGAGATAGATCGCTATCGCTCTATCGTTTACCTT
ATTATTCGGACTGACTGTTATGTTATGTTATGAAGGAGCATAGCTTTTAGTAGTGCGTGCCCTCG
CCTTCGGCTCGGGTTTCGTGCCTTTCGCTGTGCCATGGCCTACCGTTGCCCGAATCGCTTGGAGG
AATCGCTTGCGCGCCGCCAGCACCGAGCCAAAAGCGCGCGCATCT
Right flanking sequence: Indices 311256 -- 311755
GGAACTTCCCCTCCCCTGAGGCAATCACGAAGGCTTTAAGGTAGGCAGGCTTTAGGGTCTGAGAT
TTAGGGTCTGAGATTTAGGTCAAGGGTATGACAAGCCCTGAGGATTGAGCAATTGGTAAAGCAAC
GTGATTTCTGAACCGCCCAGGCTGCACGAGCGTTATCACATCTCGATTTGGCTTTCGGCGGCCTA
TGCTGATTCTGAAAAGCGGGAGAGCCCCAAAGCGAGTCATCGGAACACTGCCTTAACTCCGAGTT
GGGAAGCGGATTGTCTCAACCAACACTTGTAGATTGATTCTACTTGTTTTTCGCTCTTTTAGCTC
TAAATCCGCTCATTGTTTCTTTTTCCGAAAACTTAGATTGATTGTTAAAACCAACCTGGTGAACT
GGGCGTGCCGGGGGCTTGGGGGCGCGGGGGAAAAGGCCGCCTGGTGAACGGAGGTATGGAGGAGA
AGATCTAAGTACCGGATTCTGCGAGACGGTATAAGTGCGTCGGAA
Found at i:311234 original size:16 final size:16
Alignment explanation
Indices: 311213--311270 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
311203 CTTCCCTTCC
311213 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
***
311229 CTTCCCTTCCCT-TCC
1 CTTCCCTTCCCTGGAA
311244 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
*
311260 CTTCCCCTCCC
1 CTTCCCTTCCC
311271 CTGAGGCAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 12 0.35
16 22 0.65
ACGTcount: A:0.07, C:0.53, G:0.07, T:0.33
Consensus pattern (16 bp):
CTTCCCTTCCCTGGAA
Left flanking sequence: Indices 310713 -- 311212
AGCGCAGGGGGGAATAGGTGGGAAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTC
AAGGCACATACCTTGGAGAGGCTAGGCGTGAAGAAGCCAGCCTTGGTTCGTTGATGAACGAGTAA
GCCTTCGCTCTCTTAATCCGGCTCGAGGCCCGTAGCGCGTAGCGCTTTATTCTGTCCCGGTTGTC
TGACAGGGACAAGATAACCGCCGGGTTGGACACAAGGTCGGTCGGTCTTTGAAGAGATAGATCGC
TATCGCTCTATCGTTTACCTTATTATTCGGACTGACTGTTATGTTATGTTATGAAGGAGCATAGC
TTTTAGTAGTGCGTGCCCTCGCCTTCGGCTCGGGTTTCGTGCCTTTCGCTGTGCCATGGCCTACC
GTTGCCCGAATCGCTTGGAGGAATCGCTTGCGCGCCGCCAGCACCGAGCCAAAAGCGCGCGCATC
TTTCCCTTCCCTTCCCTTCCATTCCCTTCCCTTCCCTTCCCTTCC
Right flanking sequence: Indices 311271 -- 311770
CTGAGGCAATCACGAAGGCTTTAAGGTAGGCAGGCTTTAGGGTCTGAGATTTAGGGTCTGAGATT
TAGGTCAAGGGTATGACAAGCCCTGAGGATTGAGCAATTGGTAAAGCAACGTGATTTCTGAACCG
CCCAGGCTGCACGAGCGTTATCACATCTCGATTTGGCTTTCGGCGGCCTATGCTGATTCTGAAAA
GCGGGAGAGCCCCAAAGCGAGTCATCGGAACACTGCCTTAACTCCGAGTTGGGAAGCGGATTGTC
TCAACCAACACTTGTAGATTGATTCTACTTGTTTTTCGCTCTTTTAGCTCTAAATCCGCTCATTG
TTTCTTTTTCCGAAAACTTAGATTGATTGTTAAAACCAACCTGGTGAACTGGGCGTGCCGGGGGC
TTGGGGGCGCGGGGGAAAAGGCCGCCTGGTGAACGGAGGTATGGAGGAGAAGATCTAAGTACCGG
ATTCTGCGAGACGGTATAAGTGCGTCGGAAAGCCCGGTTCCGCCT
Found at i:311270 original size:26 final size:26
Alignment explanation
Indices: 311203--311270 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 26
311193 CTTCCCTTCC
*
311203 CTTCCCTTCCCTTCCCTTCCCTGGAA
1 CTTCCCCTCCCTTCCCTTCCCTGGAA
311229 CTTCCCTTCCCTTCCCTTCCCTTCCCTGGAA
1 CTT--C--CCC-TCCCTTCCCTTCCCTGGAA
311260 CTTCCCCTCCC
1 CTTCCCCTCCC
311271 CTGAGGCAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
26 7 0.19
27 3 0.08
28 1 0.03
29 1 0.03
30 2 0.06
31 22 0.61
ACGTcount: A:0.06, C:0.54, G:0.06, T:0.34
Consensus pattern (26 bp):
CTTCCCCTCCCTTCCCTTCCCTGGAA
Left flanking sequence: Indices 310703 -- 311202
ACCTTGACCGAGCGCAGGGGGGAATAGGTGGGAAGTTCTTCTGCTTCCCCCGCAGCCCCAACTCC
TGGCTCGGTCAAGGCACATACCTTGGAGAGGCTAGGCGTGAAGAAGCCAGCCTTGGTTCGTTGAT
GAACGAGTAAGCCTTCGCTCTCTTAATCCGGCTCGAGGCCCGTAGCGCGTAGCGCTTTATTCTGT
CCCGGTTGTCTGACAGGGACAAGATAACCGCCGGGTTGGACACAAGGTCGGTCGGTCTTTGAAGA
GATAGATCGCTATCGCTCTATCGTTTACCTTATTATTCGGACTGACTGTTATGTTATGTTATGAA
GGAGCATAGCTTTTAGTAGTGCGTGCCCTCGCCTTCGGCTCGGGTTTCGTGCCTTTCGCTGTGCC
ATGGCCTACCGTTGCCCGAATCGCTTGGAGGAATCGCTTGCGCGCCGCCAGCACCGAGCCAAAAG
CGCGCGCATCTTTCCCTTCCCTTCCCTTCCATTCCCTTCCCTTCC
Right flanking sequence: Indices 311271 -- 311770
CTGAGGCAATCACGAAGGCTTTAAGGTAGGCAGGCTTTAGGGTCTGAGATTTAGGGTCTGAGATT
TAGGTCAAGGGTATGACAAGCCCTGAGGATTGAGCAATTGGTAAAGCAACGTGATTTCTGAACCG
CCCAGGCTGCACGAGCGTTATCACATCTCGATTTGGCTTTCGGCGGCCTATGCTGATTCTGAAAA
GCGGGAGAGCCCCAAAGCGAGTCATCGGAACACTGCCTTAACTCCGAGTTGGGAAGCGGATTGTC
TCAACCAACACTTGTAGATTGATTCTACTTGTTTTTCGCTCTTTTAGCTCTAAATCCGCTCATTG
TTTCTTTTTCCGAAAACTTAGATTGATTGTTAAAACCAACCTGGTGAACTGGGCGTGCCGGGGGC
TTGGGGGCGCGGGGGAAAAGGCCGCCTGGTGAACGGAGGTATGGAGGAGAAGATCTAAGTACCGG
ATTCTGCGAGACGGTATAAGTGCGTCGGAAAGCCCGGTTCCGCCT
Found at i:311325 original size:14 final size:14
Alignment explanation
Indices: 311306--311339 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
311296 GTAGGCAGGC
311306 TTTAGGGTCTGAGA
1 TTTAGGGTCTGAGA
311320 TTTAGGGTCTGAGA
1 TTTAGGGTCTGAGA
311334 TTTAGG
1 TTTAGG
311340 TCAAGGGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.21, C:0.06, G:0.35, T:0.38
Consensus pattern (14 bp):
TTTAGGGTCTGAGA
Left flanking sequence: Indices 310806 -- 311305
TGAAGAAGCCAGCCTTGGTTCGTTGATGAACGAGTAAGCCTTCGCTCTCTTAATCCGGCTCGAGG
CCCGTAGCGCGTAGCGCTTTATTCTGTCCCGGTTGTCTGACAGGGACAAGATAACCGCCGGGTTG
GACACAAGGTCGGTCGGTCTTTGAAGAGATAGATCGCTATCGCTCTATCGTTTACCTTATTATTC
GGACTGACTGTTATGTTATGTTATGAAGGAGCATAGCTTTTAGTAGTGCGTGCCCTCGCCTTCGG
CTCGGGTTTCGTGCCTTTCGCTGTGCCATGGCCTACCGTTGCCCGAATCGCTTGGAGGAATCGCT
TGCGCGCCGCCAGCACCGAGCCAAAAGCGCGCGCATCTTTCCCTTCCCTTCCCTTCCATTCCCTT
CCCTTCCCTTCCCTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTGGAAC
TTCCCCTCCCCTGAGGCAATCACGAAGGCTTTAAGGTAGGCAGGC
Right flanking sequence: Indices 311340 -- 311839
TCAAGGGTATGACAAGCCCTGAGGATTGAGCAATTGGTAAAGCAACGTGATTTCTGAACCGCCCA
GGCTGCACGAGCGTTATCACATCTCGATTTGGCTTTCGGCGGCCTATGCTGATTCTGAAAAGCGG
GAGAGCCCCAAAGCGAGTCATCGGAACACTGCCTTAACTCCGAGTTGGGAAGCGGATTGTCTCAA
CCAACACTTGTAGATTGATTCTACTTGTTTTTCGCTCTTTTAGCTCTAAATCCGCTCATTGTTTC
TTTTTCCGAAAACTTAGATTGATTGTTAAAACCAACCTGGTGAACTGGGCGTGCCGGGGGCTTGG
GGGCGCGGGGGAAAAGGCCGCCTGGTGAACGGAGGTATGGAGGAGAAGATCTAAGTACCGGATTC
TGCGAGACGGTATAAGTGCGTCGGAAAGCCCGGTTCCGCCTTCGGGGGCCCCCGGCCTGTGGTAA
GAGGATGGGAGGTATCCCAACTCAGAAAAATGCAATAACTTCTCC
Found at i:312591 original size:42 final size:42
Alignment explanation
Indices: 312544--312630 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
312534 CCGAGCCCCC
312544 CCTGCCACCTCTTCCCCTGCGCTCGGAAAACTTCTGCACATA
1 CCTGCCACCTCTTCCCCTGCGCTCGGAAAACTTCTGCACATA
312586 CCTGCCACCTCTTCCCCTGCGCTCGGAAAACTTCTGCACATA
1 CCTGCCACCTCTTCCCCTGCGCTCGGAAAACTTCTGCACATA
312628 CCT
1 CCT
312631 ATGATATTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.18, C:0.44, G:0.14, T:0.24
Consensus pattern (42 bp):
CCTGCCACCTCTTCCCCTGCGCTCGGAAAACTTCTGCACATA
Left flanking sequence: Indices 312044 -- 312543
ACGTCCTAACCCAAGTACTTGGGTTGCTACCCTCACTGACTGAACCCGGGCACATCGTAACTTCA
AGTACGTCCTACCTCGTAGAGTACTTGGGATGGGCCACCCCGACACCGTCGACCTGAGGCAGCGG
GGCATCCATCCGGGAAAGAAGGCTGGAAATCTCTAACGGGAAGGCCTGGGGTCAAGGGCAGGATA
TGGCTGGGGGGTCAAGCCAACCAAATCTAGATTTATCGCCGCCTATCGAACTACTTATAAAAAGA
AAGTTAGTTTTCAAAATACTCCTGTCGGTCCTGAATTCCCGTACTGTCGGTGACTGCCTTTCGGT
TTAGGTATTACGACCCTCCCTCCCCTTAACCTCTTCCCCTGCGCTCGGTAAAGGTAATATCTGCT
GTCAAAACTAGGGTCGAGTGATGGGAAGTGATTTCTGTCTTCCGGCCTTTCTGTTTGCTTCTCGA
CACCCACCGTTCAAGCTGTTCAGTGCATGTAAAAGCCGAGCCCCC
Right flanking sequence: Indices 312631 -- 313130
ATGATATTTGAGTAGGTAGAATGGTTTGCAAAGCGTTGATCGATCACCGTAGGCAGCCGAATCTC
CCCCGGGATTAGACGGGTGGGAATCGGCTAATTGGAATATTTGGTTTAGCCACTTCGCTACCACT
TCGACAGCACGGGCTTGCTTGCGGGGGCATTAATGCCGGGGGAGGGGAGGGGAGGGAAGTTCCAG
GGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGTTCCAGGGAAGGGAAGACCTGGGCC
TTGGATCCCACCCCTGCATAACTTTTGGGGGAAGACACTCGACTTTGCGAGAATGTTCTTCGCCA
GGAGAACCGAACCAACCTCTGGCCTGGACGCTCGGTTGTCCGACCCTCCTGGAAAAGTAGGCTAC
GGGCCGGAGATAGGGGATCTTGTTTGTTATGAAAAGACCCCCCCTCTGGAAACCCCTGCGCTCGG
TCAATAACTTCCAAACAACCTTCTGCCTCCGTTTTAAAGCATCTT
Found at i:312881 original size:5 final size:5
Alignment explanation
Indices: 312824--312865 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
312814 GGGAAGTTCC
312824 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AG
1 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AG
312866 TTCCAGGGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
AGGGA
Left flanking sequence: Indices 312324 -- 312823
CCTGTCGGTCCTGAATTCCCGTACTGTCGGTGACTGCCTTTCGGTTTAGGTATTACGACCCTCCC
TCCCCTTAACCTCTTCCCCTGCGCTCGGTAAAGGTAATATCTGCTGTCAAAACTAGGGTCGAGTG
ATGGGAAGTGATTTCTGTCTTCCGGCCTTTCTGTTTGCTTCTCGACACCCACCGTTCAAGCTGTT
CAGTGCATGTAAAAGCCGAGCCCCCCCTGCCACCTCTTCCCCTGCGCTCGGAAAACTTCTGCACA
TACCTGCCACCTCTTCCCCTGCGCTCGGAAAACTTCTGCACATACCTATGATATTTGAGTAGGTA
GAATGGTTTGCAAAGCGTTGATCGATCACCGTAGGCAGCCGAATCTCCCCCGGGATTAGACGGGT
GGGAATCGGCTAATTGGAATATTTGGTTTAGCCACTTCGCTACCACTTCGACAGCACGGGCTTGC
TTGCGGGGGCATTAATGCCGGGGGAGGGGAGGGGAGGGAAGTTCC
Right flanking sequence: Indices 312866 -- 313365
TTCCAGGGAAGGGAAGACCTGGGCCTTGGATCCCACCCCTGCATAACTTTTGGGGGAAGACACTC
GACTTTGCGAGAATGTTCTTCGCCAGGAGAACCGAACCAACCTCTGGCCTGGACGCTCGGTTGTC
CGACCCTCCTGGAAAAGTAGGCTACGGGCCGGAGATAGGGGATCTTGTTTGTTATGAAAAGACCC
CCCCTCTGGAAACCCCTGCGCTCGGTCAATAACTTCCAAACAACCTTCTGCCTCCGTTTTAAAGC
ATCTTTTCCCCCGGGTCGGAGATTAAAGGATACTCCGAAAGCTCGTATAGAGCTTTGTCTCCGAC
GCCCTCGCCGCCCATGGAAGTAAGTGGGTGATGCGAACAACTTTAAGAGTGAGTTCCTAAAGACG
ACTTTGCCGGGCCGGGTTCTACCGTCGTCTTCGGTGTCGCCAGCCGGCCAACCTAAGAGCCTGTA
TGTATGGCCTCAAACCCCACTCATCCGTGCTTTCTTCGGGCAGGG
Found at i:313414 original size:5 final size:5
Alignment explanation
Indices: 313406--313454 Score: 82
Period size: 5 Copynumber: 10.0 Consensus size: 5
313396 CGATGATCTT
*
313406 CTTGG CTTGG CTTGG CTTGG CTTGG TTTGG CTTGG CTTGG CTTGG -TTGG
1 CTTGG CTTGG CTTGG CTTGG CTTGG CTTGG CTTGG CTTGG CTTGG CTTGG
313455 TTAAAGGCTG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
4 4 0.10
5 38 0.90
ACGTcount: A:0.00, C:0.16, G:0.41, T:0.43
Consensus pattern (5 bp):
CTTGG
Left flanking sequence: Indices 312906 -- 313405
GCATAACTTTTGGGGGAAGACACTCGACTTTGCGAGAATGTTCTTCGCCAGGAGAACCGAACCAA
CCTCTGGCCTGGACGCTCGGTTGTCCGACCCTCCTGGAAAAGTAGGCTACGGGCCGGAGATAGGG
GATCTTGTTTGTTATGAAAAGACCCCCCCTCTGGAAACCCCTGCGCTCGGTCAATAACTTCCAAA
CAACCTTCTGCCTCCGTTTTAAAGCATCTTTTCCCCCGGGTCGGAGATTAAAGGATACTCCGAAA
GCTCGTATAGAGCTTTGTCTCCGACGCCCTCGCCGCCCATGGAAGTAAGTGGGTGATGCGAACAA
CTTTAAGAGTGAGTTCCTAAAGACGACTTTGCCGGGCCGGGTTCTACCGTCGTCTTCGGTGTCGC
CAGCCGGCCAACCTAAGAGCCTGTATGTATGGCCTCAAACCCCACTCATCCGTGCTTTCTTCGGG
CAGGGACGGCACAGCGTTTGAATGAAAACTCGGCTCGATGATCTT
Right flanking sequence: Indices 313455 -- 313954
TTAAAGGCTGGCTGGCTGCTTTTTACCCTTTAACCGTAAGCGGGACGTCAAGGCGTAGATCATCT
ACGTCCCGACCCCCCAAGAGCCAAGAGCCTGGTGTGAGGCCGGGACCCCACACCATGAGAGCGCG
GGGCGGGCATACTCCTAGATAGAGATGGAAGTATCACCCAGTTCGTAGAGTTGGATATAACACCC
CTGCCACCCAACCCTTGAGGCCGATTCAAAAAAACGGCTGGCTGCCCAGGGGAAGGGCACCGAAC
CATTCGCCAATGCGATGTTTCCAGAACAAATAGGAAAACGAAGACCTAGCCCGCAAAACCAAAGC
TTGACAAATAAATACAGGTGTCGGGATCCAAGGTTGCCAACAAAAGAATCTGAGCGCAGCTTTCC
CCCGTGCCAGGAAATCCGTCAAAAAAGAGTTAGTTCTGAGCGCAGCTACCGTGCCAGGAACCACT
CTCTCTCCTTCCTTCCTTCGAGTACCGAGGAATACAGATAGGAAG
Found at i:316136 original size:12 final size:12
Alignment explanation
Indices: 316119--316147 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
316109 GTAATCCCGA
316119 CTTTATTTCTTT
1 CTTTATTTCTTT
316131 CTTTATTTCTTT
1 CTTTATTTCTTT
316143 CTTTA
1 CTTTA
316148 AGGTGCCCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTATTTCTTT
Left flanking sequence: Indices 315619 -- 316118
AAAAGCAAGCTCTTCACACCCTTTTTGGACTGGACTTCCAAACTTCTGCTTCGCGCAGCAGAAGA
TCTCTGCTCTGCTCTTCTGTAACCGGACCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGC
AGCAGAAGCAGAAGATCTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCACTCCAAACTTCT
GCTTCGCGCAGCGAAGAACTTCTGCGGATTTCAAAAAAAGAGTGCAACTTCTGCACCAAGGTTTG
GTTGGGTTAAAAGTTGGTTTCGCAGCGGGTAAAAGCAAGCTCTTTTTGGACGGTGGAAATTGCTT
GCGTAAAAAGGTAGAAAACGGGTAAGGGGGTGGTCAACTACACGGCAGGTTGGGCAATCAAAAAA
CTATCTACTACCCGCTTTCCTTCCGTGGATGGCCTTACTTACGAAATCAATCGGGGACTTTGACG
GTCGAGTGGATGGTAGGAGGGATAGTGGGACACTCGTAATCCCGA
Right flanking sequence: Indices 316148 -- 316647
AGGTGCCCACAGTCAGTTTTGGGCTTTACTTGAAGGTCGATATACTCTCCAACGTTCTTTCAAGG
GGTGGGCCAAGAAGTTCCTCTTCCCCTGCGCTCGGTCAAGGCACATACCTTGGATCCAACCCCGA
CTTAAACTGGTCTTCCCCCGTTACTAAAGTGCTTATGAAGGGAATACCTATAAAAATAAAGTGGG
AAAGCGCTCCACGCTTTCAATCACTCACTCCTGGGGGGAAGGGAAGGGAAGGGAAGGGAAGGGAA
GGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGGGAAGGG
AAGGGAAGGGAAGTTCCAGGGAAGGGAAGGGCAAGTTGGTAAATCGCTACTTCTAACTTGGCTTT
CAATCCACCCGTTCCCCCGGTTAGCGGAAATCACGTATATAGAGAAAGCGCGACCTACTCTTCCG
TCGGGATCCAATCCAAGGTGTGCAGAAGGTTGTTTGAATCTGAGC
Found at i:316428 original size:26 final size:26
Alignment explanation
Indices: 316392--316503 Score: 182
Period size: 26 Copynumber: 4.5 Consensus size: 26
316382 AGGGAAGGGA
316392 AGGGAAGGGAAGGGAAGGGAAGTTCC
1 AGGGAAGGGAAGGGAAGGGAAGTTCC
316418 AGGGAAGGGAAGGGAAGGGAAGTTCC
1 AGGGAAGGGAAGGGAAGGGAAGTTCC
316444 AGGGAAGGGAAGGGAAGGG-A-----
1 AGGGAAGGGAAGGGAAGGGAAGTTCC
316464 AGGGAAGGGAAGGGAAGGGAAGTTCC
1 AGGGAAGGGAAGGGAAGGGAAGTTCC
316490 AGGGAAGGGAAGGG
1 AGGGAAGGGAAGGG
316504 CAAGTTGGTA
Statistics
Matches: 80, Mismatches: 0, Indels: 12
0.87 0.00 0.13
Matches are distributed among these distances:
20 19 0.24
21 1 0.01
25 1 0.01
26 59 0.74
ACGTcount: A:0.36, C:0.05, G:0.54, T:0.05
Consensus pattern (26 bp):
AGGGAAGGGAAGGGAAGGGAAGTTCC
Left flanking sequence: Indices 315892 -- 316391
TTGGTTTCGCAGCGGGTAAAAGCAAGCTCTTTTTGGACGGTGGAAATTGCTTGCGTAAAAAGGTA
GAAAACGGGTAAGGGGGTGGTCAACTACACGGCAGGTTGGGCAATCAAAAAACTATCTACTACCC
GCTTTCCTTCCGTGGATGGCCTTACTTACGAAATCAATCGGGGACTTTGACGGTCGAGTGGATGG
TAGGAGGGATAGTGGGACACTCGTAATCCCGACTTTATTTCTTTCTTTATTTCTTTCTTTAAGGT
GCCCACAGTCAGTTTTGGGCTTTACTTGAAGGTCGATATACTCTCCAACGTTCTTTCAAGGGGTG
GGCCAAGAAGTTCCTCTTCCCCTGCGCTCGGTCAAGGCACATACCTTGGATCCAACCCCGACTTA
AACTGGTCTTCCCCCGTTACTAAAGTGCTTATGAAGGGAATACCTATAAAAATAAAGTGGGAAAG
CGCTCCACGCTTTCAATCACTCACTCCTGGGGGGAAGGGAAGGGA
Right flanking sequence: Indices 316504 -- 317003
CAAGTTGGTAAATCGCTACTTCTAACTTGGCTTTCAATCCACCCGTTCCCCCGGTTAGCGGAAAT
CACGTATATAGAGAAAGCGCGACCTACTCTTCCGTCGGGATCCAATCCAAGGTGTGCAGAAGGTT
GTTTGAATCTGAGCGCAGCTTTCCCCTCCCCTCCCCTCCCCTCCCCCGTGCGGGGGAAGAAGGAG
AACCCTACAGGACGGATCAAAAGAGAGTGCCAAAAGAGGGTAAAGGGTTCTTGCTTGCTTTCTGA
GCGCAGGTGTTCTCCAAGCATTGGTGGGGAAGAACTTTTGGCGTGCGTGCGGGTAGGTTCTAACG
CTCTTTCAGGTGTCCCACTCGTAACTCCTACCCCCACCCACAAACTTGGATGGAAGGGAAGCTTT
CAATCCGGTTGGGGCTGCTTTCCCACCGGCTTACCATCCACTCCCTGCCACCTATTCCCCTGCGC
TCGGTAAAGGCACATACCTCCTTGGATCCCGCCCTCCTTCACTTC
Found at i:316503 original size:5 final size:5
Alignment explanation
Indices: 316378--316485 Score: 144
Period size: 5 Copynumber: 21.2 Consensus size: 5
316368 CACTCCTGGG
***
316378 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GTTCCA GGGAA GGGAA
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA G-GGAA GGGAA GGGAA
***
316429 GGGAA GGGAA GTTCCA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
1 GGGAA GGGAA G-GGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
316480 GGGAA G
1 GGGAA G
316486 TTCCAGGGAA
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
5 85 0.96
6 4 0.04
ACGTcount: A:0.37, C:0.04, G:0.56, T:0.04
Consensus pattern (5 bp):
GGGAA
Left flanking sequence: Indices 315878 -- 316377
GGTTGGGTTAAAAGTTGGTTTCGCAGCGGGTAAAAGCAAGCTCTTTTTGGACGGTGGAAATTGCT
TGCGTAAAAAGGTAGAAAACGGGTAAGGGGGTGGTCAACTACACGGCAGGTTGGGCAATCAAAAA
ACTATCTACTACCCGCTTTCCTTCCGTGGATGGCCTTACTTACGAAATCAATCGGGGACTTTGAC
GGTCGAGTGGATGGTAGGAGGGATAGTGGGACACTCGTAATCCCGACTTTATTTCTTTCTTTATT
TCTTTCTTTAAGGTGCCCACAGTCAGTTTTGGGCTTTACTTGAAGGTCGATATACTCTCCAACGT
TCTTTCAAGGGGTGGGCCAAGAAGTTCCTCTTCCCCTGCGCTCGGTCAAGGCACATACCTTGGAT
CCAACCCCGACTTAAACTGGTCTTCCCCCGTTACTAAAGTGCTTATGAAGGGAATACCTATAAAA
ATAAAGTGGGAAAGCGCTCCACGCTTTCAATCACTCACTCCTGGG
Right flanking sequence: Indices 316486 -- 316985
TTCCAGGGAAGGGAAGGGCAAGTTGGTAAATCGCTACTTCTAACTTGGCTTTCAATCCACCCGTT
CCCCCGGTTAGCGGAAATCACGTATATAGAGAAAGCGCGACCTACTCTTCCGTCGGGATCCAATC
CAAGGTGTGCAGAAGGTTGTTTGAATCTGAGCGCAGCTTTCCCCTCCCCTCCCCTCCCCTCCCCC
GTGCGGGGGAAGAAGGAGAACCCTACAGGACGGATCAAAAGAGAGTGCCAAAAGAGGGTAAAGGG
TTCTTGCTTGCTTTCTGAGCGCAGGTGTTCTCCAAGCATTGGTGGGGAAGAACTTTTGGCGTGCG
TGCGGGTAGGTTCTAACGCTCTTTCAGGTGTCCCACTCGTAACTCCTACCCCCACCCACAAACTT
GGATGGAAGGGAAGCTTTCAATCCGGTTGGGGCTGCTTTCCCACCGGCTTACCATCCACTCCCTG
CCACCTATTCCCCTGCGCTCGGTAAAGGCACATACCTCCTTGGAT
Found at i:316665 original size:5 final size:5
Alignment explanation
Indices: 316655--316679 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
316645 AGCGCAGCTT
316655 TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC
316680 CGTGCGGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 316155 -- 316654
CACAGTCAGTTTTGGGCTTTACTTGAAGGTCGATATACTCTCCAACGTTCTTTCAAGGGGTGGGC
CAAGAAGTTCCTCTTCCCCTGCGCTCGGTCAAGGCACATACCTTGGATCCAACCCCGACTTAAAC
TGGTCTTCCCCCGTTACTAAAGTGCTTATGAAGGGAATACCTATAAAAATAAAGTGGGAAAGCGC
TCCACGCTTTCAATCACTCACTCCTGGGGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGT
TCCAGGGAAGGGAAGGGAAGGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAA
GGGAAGTTCCAGGGAAGGGAAGGGCAAGTTGGTAAATCGCTACTTCTAACTTGGCTTTCAATCCA
CCCGTTCCCCCGGTTAGCGGAAATCACGTATATAGAGAAAGCGCGACCTACTCTTCCGTCGGGAT
CCAATCCAAGGTGTGCAGAAGGTTGTTTGAATCTGAGCGCAGCTT
Right flanking sequence: Indices 316680 -- 317179
CGTGCGGGGGAAGAAGGAGAACCCTACAGGACGGATCAAAAGAGAGTGCCAAAAGAGGGTAAAGG
GTTCTTGCTTGCTTTCTGAGCGCAGGTGTTCTCCAAGCATTGGTGGGGAAGAACTTTTGGCGTGC
GTGCGGGTAGGTTCTAACGCTCTTTCAGGTGTCCCACTCGTAACTCCTACCCCCACCCACAAACT
TGGATGGAAGGGAAGCTTTCAATCCGGTTGGGGCTGCTTTCCCACCGGCTTACCATCCACTCCCT
GCCACCTATTCCCCTGCGCTCGGTAAAGGCACATACCTCCTTGGATCCCGCCCTCCTTCACTTCG
CTGCGCGAAGCAAAGGGAGTTCGGTTGCGGGCTTGCAGGAGATTGCTTGCGTAAATAGAGAGCTA
ACTTTTGGCTGGCAAACAAACAACCTTCACTTCGCTGCGCGCCCTGCCACCTATTCCCCTGCGCT
CGGAAAACAAACAACCTTCTGCACATACCTCTGGAGTTCCTTCTG
Found at i:318954 original size:15 final size:15
Alignment explanation
Indices: 318934--318967 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
318924 TGCGCGGGGG
318934 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
318949 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
318964 GAAG
1 GAAG
318968 CAGAAGCCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (15 bp):
GAAGGGGAAGAAGAA
Left flanking sequence: Indices 318434 -- 318933
AGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACC
AAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCGTATAAGGTCCATGGCCCG
AGGTAGAGCACTCAATGGGCGGCGGGTGGCCCAAAGCTTGACCAACCCCAAGGAAACTCCGAATA
CAGGCCTAGAATCGTTTGTACAGACAGACTTTGGGTGCTAAGATCCAAAGTCGAGAGGGGAACAG
CCCAGATCGTACGCTAAGGTCCTTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGAC
AACCGGGAGGTGGGCTTGGAAGCAGCCATCCTTCGAAGAAAGCGTAATAGCTCACCGGCCTAGCG
ATTTCATGGCACCGAAGATGTCCCGGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGC
AAGCAAGCATCATCGCGGGCCTGAACTTATTCCCCTGCGCGGGGG
Right flanking sequence: Indices 318968 -- 319467
CAGAAGCCCGTTGTAAGTTCGCAGGGGAAAAGGTTGAAACTTCTGCGTAGCTGCGCGAAGCAGAA
GTTCACACCAAACTCCTGGAGTTCCTTCACTGAACTATCCAACCAACCAAACTTCCCGCTTGCCC
GCGGGGGAAGAAGGGGCTTGCTTGCCCGCTTGCTTGCTTGCTTCTTCAAGTGTCAGTAGCGGAAC
GTTCTGTCAATCGAGGAAGGTTGTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGAC
ATGAGTAACGAGAAATCATGCGAAAAACATGATCGCCTGCCAGTTCCAGGGTTTCTGCGTTCAGT
CAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCGAAAGGGCTGCCGTCCGATGGGTACACG
AAAGTGACGAAGTTGCTTGCTTTGACTACATGCGTGTTTGTTAAACTCGTGGATTGGATGATTGG
GCGGGGGGCTACAAAGCAGCCACCCGGCACTCATTGGCTGGGGCT
Found at i:318973 original size:15 final size:15
Alignment explanation
Indices: 318940--318973 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
318930 GGGGGAAGGG
**
318940 GAAGAAGAAGAAGGG
1 GAAGAAGAAGAAGCA
318955 GAAGAAGAAGAAGCA
1 GAAGAAGAAGAAGCA
318970 GAAG
1 GAAG
318974 CCCGTTGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.41, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAGAAGCA
Left flanking sequence: Indices 318440 -- 318939
GAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATC
GGATATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCGTATAAGGTCCATGGCCCGAGGTAG
AGCACTCAATGGGCGGCGGGTGGCCCAAAGCTTGACCAACCCCAAGGAAACTCCGAATACAGGCC
TAGAATCGTTTGTACAGACAGACTTTGGGTGCTAAGATCCAAAGTCGAGAGGGGAACAGCCCAGA
TCGTACGCTAAGGTCCTTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCGG
GAGGTGGGCTTGGAAGCAGCCATCCTTCGAAGAAAGCGTAATAGCTCACCGGCCTAGCGATTTCA
TGGCACCGAAGATGTCCCGGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAAGCAA
GCATCATCGCGGGCCTGAACTTATTCCCCTGCGCGGGGGGAAGGG
Right flanking sequence: Indices 318974 -- 319473
CCCGTTGTAAGTTCGCAGGGGAAAAGGTTGAAACTTCTGCGTAGCTGCGCGAAGCAGAAGTTCAC
ACCAAACTCCTGGAGTTCCTTCACTGAACTATCCAACCAACCAAACTTCCCGCTTGCCCGCGGGG
GAAGAAGGGGCTTGCTTGCCCGCTTGCTTGCTTGCTTCTTCAAGTGTCAGTAGCGGAACGTTCTG
TCAATCGAGGAAGGTTGTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGT
AACGAGAAATCATGCGAAAAACATGATCGCCTGCCAGTTCCAGGGTTTCTGCGTTCAGTCAATCT
ACGCAGAGTGAATCGGTCCCTAAGGAACCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTG
ACGAAGTTGCTTGCTTTGACTACATGCGTGTTTGTTAAACTCGTGGATTGGATGATTGGGCGGGG
GGCTACAAAGCAGCCACCCGGCACTCATTGGCTGGGGCTCCCAGG
Found at i:321631 original size:5 final size:5
Alignment explanation
Indices: 321621--321654 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
321611 CTCGCAGGGG
321621 CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCC
1 CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCC
321655 GGGGAGGGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.82, G:0.00, T:0.18
Consensus pattern (5 bp):
CCCCT
Left flanking sequence: Indices 321121 -- 321620
GAGAGCCAGTCACTCCACGTGTTCCCCCCGCCCCCCGGCTGGCTTGCCAGCGGGAGTCCACTCCT
TCACCCCCGTGTTCTGCCAAACTGCCATGCGGCACCGGTTTGTCGAGGGAAAGCAAGGGGGGGAA
TACCACTCGACCCAGTGCCGGCAAATTGCAATTCGTGCAAGAGGGAGGGTGGTTCCTGGCACGGT
AGCTGCGCTCAGATTCAAACAACCTTCTGCACACCTGAACTCCGCTGCGCGAAGAACCAGGTCCA
ACAAGTGCGAACTTTCGGTAGCTGCGCGAAGAACCAGCCAACCAACCAAACAACCTTCTGGAGTT
CGCAGAAGTTCTCTTCCCAGGGGAGGGTAGGGGAGGGGAGGAGAACCCCTGCGCGAAGCAGAAGT
CCCGCAGGTATGTGCAGAAGGGTGTTCTCCGAGCGCCCCCTGGGGAAAAGAACTCCTGCTCGCGG
TGCTCGGCCCTTCTGCACATACGCAGAAGGGTGTTCTCGCAGGGG
Right flanking sequence: Indices 321655 -- 322154
GGGGAGGGGCCTGCGCTCGGTCAAGAACACCCTTCTGCAACCAAGGGGAAAAGGTTGACCTTCTG
GTTCCAAACAACCAACAACCTTCTGCTTCCCCCCAAACAACCCGTCCAACAAGTGCGAACTTTCG
GCACGGGGGAAGGGAGGGGAAAGCTGCGCGAAGAACCGGCCAAACAGCAACCCAACCAAACTCCT
GGTCCAACAAGAAAAGAACTCTTCCCCTTCTTGCTGCGCGGAGAACAACTCCTCTCTTATATCCC
TCTGAAGGTTGGTTGTTTGTGGGGTCTGCCCAACAAGAACTTCGCGTAGCGAAGAACCAGCCAAC
CAACGGTCAACCCGCCAACCCGCGCAAGCAAGCTTCTTGGTCCAACTTTTAAGCAGGCAGGTTCT
TCGGTTGTTCTACGCGAAGCAGAAGCCCCCCTTCCCGCGCGAGCCGAGCGAGCTTCTTGGTCCAA
CTTTTAAGCAGGCAGGTTCTTCGGTTGTTCTACGCGAAGAACCAG
Found at i:323359 original size:79 final size:79
Alignment explanation
Indices: 323228--323389 Score: 324
Period size: 79 Copynumber: 2.1 Consensus size: 79
323218 AACCCCGCCA
323228 ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
1 ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
323293 CGGTAAAGGCACAT
66 CGGTAAAGGCACAT
323307 ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
1 ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
323372 CGGTAAAGGCACAT
66 CGGTAAAGGCACAT
323386 ACCT
1 ACCT
323390 TTTTTTTGGA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 83 1.00
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (79 bp):
ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
CGGTAAAGGCACAT
Left flanking sequence: Indices 322728 -- 323227
GTTAGAACCTTCGCGGTAGCTGCGAAACCGGCACTCTTTTTTGATCCGTCCAAAAAGAACTTCTG
CTTCGCTGTGCGAAGCAGAAGTCTCTTCTGCACACTTTAAACACTTCTTCCCCTGCGCGGGAAGA
AGGGGAAGAAGAAGAAGCAGAAGTTCTGCCAAACTGCCTGCAACCCGTCCAACAAGTGCGAACTT
TCGGCACGGGGGAAAGCTGCGCGAAGAACCCCGCCAACCCGCATAAGTTCCGGAGTGGAATACTT
GCTTGCTTTCTTTAAAGTGTGCAGAAGAACTTCTGCAGTTCTTCTGCGCGAAGATTGATTCTTTT
GGGAGTTCCGTTCCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGAAAGTTGGTTGAAA
CACACTTCTGGGGTTGGTTTCTGCGCGAAGCAGAAGAACTGCAGAAGTTCTTCTGCAACCAACAC
TCCAACAAGTGCGAACTTTCGGTAGCTGCGCGAAGAACCCCGCCA
Right flanking sequence: Indices 323390 -- 323889
TTTTTTTGGAGTGGAATACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGCGCATTCTTTTGTCTT
GGAGGTCTTCCCCAAAAAGAACTTACTTCGCTGCGCTCAGAACCAACCTACCTTTCTGGTCCAAG
AAGAACTTTCGGTAGCTGCGCGAAGATTCTTTTGGAAGTCCAATCCAATCCAAAAAGTGTGCAGA
AGTTCTGCGCTCAGAACCAACCTACCTTTCTGGTCCAAGAAGAACGGCACGGCAGCTGCGCGAAG
ATTCTTTTGGAAGTCCTGGCACGGGGGAAAGCTGCGCAGAAGTCTCTGCTTCAAACAACCAACAA
CCAACCTTTTGCAACCCTTCTGCACACCTGAACTCCGCTGCGCTCAGAACCCCGCCAACCCGCAG
AAGTTCCTTGGCAGAAGGGTTGTTTGCTTCTGCTTCGCTGCGCGAAGAACCCCGCCAACCCGCAG
AAGTTCCTTGGCAGAAGGGTTGTTTGTGTGAACTTCTGCTTCGCT
Found at i:326960 original size:41 final size:41
Alignment explanation
Indices: 326903--326980 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
326893 TGGGGAAGAC
326903 CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACCGGAG
1 CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACCGGAG
326944 CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACC
1 CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACC
326981 TTTAAAGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.19, C:0.26, G:0.27, T:0.28
Consensus pattern (41 bp):
CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACCGGAG
Left flanking sequence: Indices 326403 -- 326902
ACGAGACCAGAGACTCGAGGACGAGAGACTTGAAAACAGCAACAACTTTGTGCGTGCAAAAATCT
CCACCAGAGACCCGAGGCCAACGGAAGGGAGCACTTGAAATGACGACGAGTCAGTCAACCTGGAG
GAAAGACGGAAAGCCAGAGGAAAACCGAGTAAAGACACTCCTCGATACCGAGGACAACTTCTCCG
AGGACAGACACTTGAGATCACAAAGACATGGGGGGCGGGTGGGATAGCGGGTCGGGAAGCGGGAG
CGTGTCACCCAATGAGTGCAAAAGTGCCTACCTTTGTAAGCGAAACAACAACCCGCCACCCCACC
CCAACCCAAAGGTGTGAACAAATCTGAGCGCAGGGCTCTCTCTTATATCCGGGGATTTTTTGCAA
AAAACCTTTCCAAGAAGTTCCTCGGAGAACCCCTGCGCTCGGTCAAGAACTAACTTCTGCCTCCA
AAAAAATGCGCAGCAAGCAACTTCTGCAACCTTTTTGGGGAAGAC
Right flanking sequence: Indices 326981 -- 327480
TTTAAAGTTGGGACGGGACTCCAAAAGGATCTCCGCAGAAGTTCTTCGCGCAGCGAAGAACTTCT
GGTTTCAAACAACCTTCTGCAACGGTTGGCGGGGGTTGGGGACTTCTGCTTCGCGCAGGGGAAGA
AGTGTTTAAAGTGTGCAGAAGAGACTTCTGCTTCGCGCAGGGGTTCTCCGGGGAGGGGAGGGGAG
GGGAGGGGAGGGGAGGGGACTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCGATCCGAAAA
AGATTACAGAAGTTTGTTTGTTTTCGCAGCTACCGAACCAAAAGCGCTTTCTGAGCGCAGCTACC
GGGGGAGGGAGGGGAGGGGACCTTCTGCTTCGCGCAGCTACCGTGCCAGGCACGGCACGGGGCCT
TCTGCAAGCAAGCAACAAACAACCCGCCCGGCCCTGCAAGCAAGCAAGAAGTTTGTCGCTTACAA
AGAAACCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCTACCGTGC
Found at i:327170 original size:5 final size:5
Alignment explanation
Indices: 327160--327194 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
327150 GGGGTTCTCC
327160 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
327195 CTTCTGCACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 326660 -- 327159
GAGCGTGTCACCCAATGAGTGCAAAAGTGCCTACCTTTGTAAGCGAAACAACAACCCGCCACCCC
ACCCCAACCCAAAGGTGTGAACAAATCTGAGCGCAGGGCTCTCTCTTATATCCGGGGATTTTTTG
CAAAAAACCTTTCCAAGAAGTTCCTCGGAGAACCCCTGCGCTCGGTCAAGAACTAACTTCTGCCT
CCAAAAAAATGCGCAGCAAGCAACTTCTGCAACCTTTTTGGGGAAGACCGGTTGCAGAAGTTTCT
TCGCGCAGCAAGTTCTTACCGGAGCGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACCTTTA
AAGTTGGGACGGGACTCCAAAAGGATCTCCGCAGAAGTTCTTCGCGCAGCGAAGAACTTCTGGTT
TCAAACAACCTTCTGCAACGGTTGGCGGGGGTTGGGGACTTCTGCTTCGCGCAGGGGAAGAAGTG
TTTAAAGTGTGCAGAAGAGACTTCTGCTTCGCGCAGGGGTTCTCC
Right flanking sequence: Indices 327195 -- 327694
CTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCGATCCGAAAAAGATTACAGAAGTTTGTTT
GTTTTCGCAGCTACCGAACCAAAAGCGCTTTCTGAGCGCAGCTACCGGGGGAGGGAGGGGAGGGG
ACCTTCTGCTTCGCGCAGCTACCGTGCCAGGCACGGCACGGGGCCTTCTGCAAGCAAGCAACAAA
CAACCCGCCCGGCCCTGCAAGCAAGCAAGAAGTTTGTCGCTTACAAAGAAACCAAAAGAGCTTGC
TTGCTTTCTGAGCGCAGCTACCGTGCCAGGCACGGCACGGATTGTTACAAAGGTAGGTAAGCACG
GATAACCCGCACGAACCGCACGAATTATTTGCCCGAATTATTACAAAGGTAGGCACGGATTCAAA
GGACCTCCAGAAGGTTGGCTGGTTCTTCGCGTAGCGAAGCAGAAGTTTCCCTTCTGCCAAGAAGG
CTTGCGTGTTGAATCTTCGCGCAGGGGAATAAGTTCAGGTAGGCA
Found at i:329258 original size:22 final size:22
Alignment explanation
Indices: 329230--329272 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
329220 AGAATTATTA
329230 CAAAGGTAGGTAAGCACGGATT
1 CAAAGGTAGGTAAGCACGGATT
329252 CAAAGGTAGGTAAGCACGGAT
1 CAAAGGTAGGTAAGCACGGAT
329273 CCCCTTCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.33, T:0.16
Consensus pattern (22 bp):
CAAAGGTAGGTAAGCACGGATT
Left flanking sequence: Indices 328730 -- 329229
TAGGAGGTAGAGTGGGACAACTTGGATCTCACGACAACTGTTTTGCGGCACTGCCAGCTATCCGT
GCCACGGGCCTGCCGGTAGTGCCACTACGAATGAGTGCAACCGGCTGCGGCACTTGCAATCCGTG
CCTACCTTTGTAAGCGAATGAGTGCGCAGAAACTCGGTTCGTGCCACTGTTAAAGTTGTTGGCCG
GTTGAAAGTTGATCCGTGCCTACCTTTGTAAGCGTGTGGGGGAACAAGTGGCCGACTGCTTGTAA
AAGTGCAAAAGTGGGAAGCTGGGCTGGCTTGCTTTCATCCGGAAATCCGAAAAAGAGTTGGCTTG
CTTTCTGAGCGCAGCTTTCCCCCGCCGGTTTGCCCAAAAAGTAAGTTCTTTTTGGGCAAAAGCTT
GGCAACAAACCTTGCCGCAAGCCCCAACCCAAAGTGCCGTTGCACTCATTCGAAACAGGTAGGCG
GATTGCCAGGCACTCATTCTTGCTTGCTTGCCAGGAGAATTATTA
Right flanking sequence: Indices 329273 -- 329772
CCCCTTCGAATGAGTGCCACGGTTGGGGGCCAGGCAGGCCCTTCCCCACCCCTGCCGGCTTGAAG
GTGTGAACAACCGCCCTCTTATATTCCTCTGAAGGTTGTTTGTGGGGAAAAGGTTGTTTGTTTTC
GCAGCTTTCCCCGGAACAGCGGCTGGCACGCCACTTCTTAAAATAAGATTCGTGGCGGTAAGTTT
CATTGGCACTCATAGCAACAAACAACCGCTTCTTTTCCCCCTGCGCACGAATTAACAACAGTTTG
CACGAATGAAAGCAGCGTCTTGTCTCCCGGGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGA
GGGGAGGGGAGGGGAGGGGAGGGGTCTTCCCCGGCCAGGCCAGCCCCGCCGGCTCAACCTAGGTT
ATATCCATTCCGACGCAACTCTTGCTTCCCCTTCACCGCTGCGCTCAGAACTTACTTTTGAAATC
TGTCCTGGGCAAGCAATTGGGCGGGCGGCGTCGCGGACAGGCTTT
Found at i:329571 original size:5 final size:5
Alignment explanation
Indices: 329563--329621 Score: 118
Period size: 5 Copynumber: 11.8 Consensus size: 5
329553 TGTCTCCCGG
329563 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
329613 GGGGA GGGG
1 GGGGA GGGG
329622 TCTTCCCCGG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 54 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 329063 -- 329562
GCGCAGCTTTCCCCCGCCGGTTTGCCCAAAAAGTAAGTTCTTTTTGGGCAAAAGCTTGGCAACAA
ACCTTGCCGCAAGCCCCAACCCAAAGTGCCGTTGCACTCATTCGAAACAGGTAGGCGGATTGCCA
GGCACTCATTCTTGCTTGCTTGCCAGGAGAATTATTACAAAGGTAGGTAAGCACGGATTCAAAGG
TAGGTAAGCACGGATCCCCTTCGAATGAGTGCCACGGTTGGGGGCCAGGCAGGCCCTTCCCCACC
CCTGCCGGCTTGAAGGTGTGAACAACCGCCCTCTTATATTCCTCTGAAGGTTGTTTGTGGGGAAA
AGGTTGTTTGTTTTCGCAGCTTTCCCCGGAACAGCGGCTGGCACGCCACTTCTTAAAATAAGATT
CGTGGCGGTAAGTTTCATTGGCACTCATAGCAACAAACAACCGCTTCTTTTCCCCCTGCGCACGA
ATTAACAACAGTTTGCACGAATGAAAGCAGCGTCTTGTCTCCCGG
Right flanking sequence: Indices 329622 -- 330121
TCTTCCCCGGCCAGGCCAGCCCCGCCGGCTCAACCTAGGTTATATCCATTCCGACGCAACTCTTG
CTTCCCCTTCACCGCTGCGCTCAGAACTTACTTTTGAAATCTGTCCTGGGCAAGCAATTGGGCGG
GCGGCGTCGCGGACAGGCTTTGCCGGGATTGATTAAGCCGGAATTATCGCCCAAAGATCCTGTCT
TTGCAGCCCACACCTGAGAGTTAAGTTAAGTTGGAACCCGCACGCAAGAAGTTAGTCCCGCTGCG
CTCAGAAAGCAAGCAAGCAAGCGCAACCGTTCTTTTTGTTCACACCTTAAAAAAGAAGAGAGTGG
AAAGGAAAGCTGTAATTGTCTCGAACCTCATGTTCAAGGGACTGGCAAGCCGTCTCCTTCGGATA
CTCTTCGGAACCACCCTCTTGGAATAAGCTGGAAGCTTTCACCTATGCAAACATGTCTAATGTAA
GACGTGGAGTTGGGATGCACTCGCTCCTTCTCCAGAGCCCGTAAT
Found at i:330928 original size:5 final size:5
Alignment explanation
Indices: 330918--330942 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
330908 GCACAGGTTT
330918 TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC
330943 CAGAGGTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 330418 -- 330917
GAAAGTCGATGCTTCGGGCGAGGCCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGG
TACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCTCGAGTTG
CAGAGAACAATCCGAACTGAGGCAATCTTTCTGGATTCGCTCCGCCTTACGGCCTTGCTTCCCAT
TGTAATTGCCATTGTAGCACGTGTGTAGCCCAGCCCATGAGGGCCATGCGGACTTGACGTCATCC
CCACCTTCCTCCATAAGTAGACTAGGCAGGCAGTCTTTTGTGAGTGCAAACCTATTTCAACACGG
AGTGCCATCCGAAAGCCCGCCCGAGTCGGGATCCAAGTTGTCCCACTCTCCCTCCTTGACTGAAC
ACAGAACTTTGCCAGGCGGCAAGCAGGTATGTGCCTTGACCGAGCCAGAAGTTGGGGCTGCGCCC
TTCTGCGTATGTGCAGAAGGTTGTTTGTTTTCCGAGCACAGGTTT
Right flanking sequence: Indices 330943 -- 331442
CAGAGGTGGTTTGCAGGTGCAGAAGGTTGTAAGTTATCCGAGCACCGGGGCTCCTCCCCTCCCCT
CCCCTCCCCTCCCCTCCCCCGGTGGCAGGGCCCGAAGGACACTACGTTACGGGGTGCACTGCCAG
GAAATACGCAGAAGTTCCGAGCGCAGGGGTTTGAAGAGGTGGGTGCCGGCGCCCGTAACATCTTA
AGGGGTAACGGGCTTGCGGGCTACCGGGGCCGTGGGTTGCCCGGGTGGTCCGAAAAGGCAGGCCG
GGAGCCCTTCACCTCGGAGGGGAGGGGAGCCCTGCGCTCGGAACTTCTGCACATACCTGGCTGGC
ACGTGCCACTATTGCCAGTGGCTCCGCCCCTCGGGGAGGGGAGGAGAACCCCTGCGCTCGGAAAA
CAAACAACCTTCTGCACCTGGCTTATGCCGTCCCACGGTAGTGCCCTGCCAGGCTGGCGCCAAGA
GGGAAGTTTGTGGCAGCCAGCTTGGTATTGCCTTGACCGAGCCCC
Found at i:331005 original size:5 final size:5
Alignment explanation
Indices: 330995--331026 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
330985 CACCGGGGCT
330995 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
331027 CGGTGGCAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 330495 -- 330994
GCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCTCGAGTTGCAGAGAACAATC
CGAACTGAGGCAATCTTTCTGGATTCGCTCCGCCTTACGGCCTTGCTTCCCATTGTAATTGCCAT
TGTAGCACGTGTGTAGCCCAGCCCATGAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCC
ATAAGTAGACTAGGCAGGCAGTCTTTTGTGAGTGCAAACCTATTTCAACACGGAGTGCCATCCGA
AAGCCCGCCCGAGTCGGGATCCAAGTTGTCCCACTCTCCCTCCTTGACTGAACACAGAACTTTGC
CAGGCGGCAAGCAGGTATGTGCCTTGACCGAGCCAGAAGTTGGGGCTGCGCCCTTCTGCGTATGT
GCAGAAGGTTGTTTGTTTTCCGAGCACAGGTTTTCCCCTCCCCTCCCCTCCCCTCCCCCAGAGGT
GGTTTGCAGGTGCAGAAGGTTGTAAGTTATCCGAGCACCGGGGCT
Right flanking sequence: Indices 331027 -- 331526
CGGTGGCAGGGCCCGAAGGACACTACGTTACGGGGTGCACTGCCAGGAAATACGCAGAAGTTCCG
AGCGCAGGGGTTTGAAGAGGTGGGTGCCGGCGCCCGTAACATCTTAAGGGGTAACGGGCTTGCGG
GCTACCGGGGCCGTGGGTTGCCCGGGTGGTCCGAAAAGGCAGGCCGGGAGCCCTTCACCTCGGAG
GGGAGGGGAGCCCTGCGCTCGGAACTTCTGCACATACCTGGCTGGCACGTGCCACTATTGCCAGT
GGCTCCGCCCCTCGGGGAGGGGAGGAGAACCCCTGCGCTCGGAAAACAAACAACCTTCTGCACCT
GGCTTATGCCGTCCCACGGTAGTGCCCTGCCAGGCTGGCGCCAAGAGGGAAGTTTGTGGCAGCCA
GCTTGGTATTGCCTTGACCGAGCCCCGGGGAAGAGGTGGCAGGTATTGCCTTTACCGAGCCCCGG
GGAAGGGGCGGGCAGTGGGCAAGCAAGTTGGTGGGGAAGCTGTGT
Found at i:332171 original size:5 final size:5
Alignment explanation
Indices: 332158--332191 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
332148 CAGGACCAGT
*
332158 TCTTT TCTTC TCTTC TCTTC TCTTC TCTTC TCTT
1 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TCTT
332192 TTCAGGACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (5 bp):
TCTTC
Left flanking sequence: Indices 331658 -- 332157
GGTCTTCCCTTCCCCAACTGCCTGCCTGCCGCAGAAGTTAGTTTCTGCGCGAAGCAGAGGCCCCC
GGTTTGCCTTCTGCCGGCAAACCCAAACAAACAACCCCCAGCCCCCCCCACTCGTTCCCCCAGCT
TTGCTGAGCGCAGGGGTTCTCCCCTCCCCTCCGGGGTTTGCAGAAGTTTCAACCAACAGCAACCC
CAAACAGCCAGCCCGGCCCTTCCCCCAGCGTGCGTGCGTTTGAAGGAAAGTCGGACTTCAAACCC
CCAAGCCTCTTCCCCCAAGCATTGGGGGAAGAGAGGCAGAAGGTTGGAAGTTCTTGACCGAGCGC
AGGGAGAGGAACTTATGCGGACACTCGATTGACGCTGCCGGGTCTTTCCCTTTCCCACTCACCAC
CCATTACTAGGTGGTGGGTTGTGCCGGGCTCGCTCGTCGGAACCACACAGGATTTGCGTTACGCG
CGCGCAAAAGCGCTCCCCCGCGCGCGCTTCTTCCCCAGGACCAGT
Right flanking sequence: Indices 332192 -- 332691
TTCAGGACCAGCTTTTCCCGCAGGGTTCCTCGGAGGGGAGGGGAGAAACCCTGCGCTCGGAGAAC
TTCTGCCTGCTGGCTTTGTAAAGTAAAGTGGGGGAGTTTGCCTGCCATTGATCGCTTGCCAGGTG
GCCTTCGGCCGCGGGGGAAGCGCTAAGCCCGCCTGCCAGCGGGGTTGTGAAGGGCTGGCATTAAA
CAGTGCCGCAGGGGAATAAGTTGTTTGTTTGTTGCGGGTTGGTTGCGGGGGAAGCGGTGCGGGGG
AAGCGGTGGTTTGGGGAAGCGCTAAGGAAAGCAGGTCGGTTTGCCGCGGCCGTTCTATGAAAGTA
GTTTCTGCGGATGATGGCATTGATCCTTCGAAAGCAGCATGTCTTAGCAACACAAAACGAGGGTT
TCGCTCGTTATAGGAGTTAACCAAAAACGTCTCACGACACGAGCTGACGACAGCCATGCAGCACC
TGTATGAATTTTCGTTTCATCCTGTTAAGGACAAGCACACTTGTC
Found at i:332449 original size:14 final size:14
Alignment explanation
Indices: 332430--332459 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
332420 GCGGGTTGGT
332430 TGCGGGGGAAGCGG
1 TGCGGGGGAAGCGG
332444 TGCGGGGGAAGCGG
1 TGCGGGGGAAGCGG
332458 TG
1 TG
332460 GTTTGGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.63, T:0.10
Consensus pattern (14 bp):
TGCGGGGGAAGCGG
Left flanking sequence: Indices 331930 -- 332429
CCCCAAGCATTGGGGGAAGAGAGGCAGAAGGTTGGAAGTTCTTGACCGAGCGCAGGGAGAGGAAC
TTATGCGGACACTCGATTGACGCTGCCGGGTCTTTCCCTTTCCCACTCACCACCCATTACTAGGT
GGTGGGTTGTGCCGGGCTCGCTCGTCGGAACCACACAGGATTTGCGTTACGCGCGCGCAAAAGCG
CTCCCCCGCGCGCGCTTCTTCCCCAGGACCAGTTCTTTTCTTCTCTTCTCTTCTCTTCTCTTCTC
TTTTCAGGACCAGCTTTTCCCGCAGGGTTCCTCGGAGGGGAGGGGAGAAACCCTGCGCTCGGAGA
ACTTCTGCCTGCTGGCTTTGTAAAGTAAAGTGGGGGAGTTTGCCTGCCATTGATCGCTTGCCAGG
TGGCCTTCGGCCGCGGGGGAAGCGCTAAGCCCGCCTGCCAGCGGGGTTGTGAAGGGCTGGCATTA
AACAGTGCCGCAGGGGAATAAGTTGTTTGTTTGTTGCGGGTTGGT
Right flanking sequence: Indices 332460 -- 332959
GTTTGGGGAAGCGCTAAGGAAAGCAGGTCGGTTTGCCGCGGCCGTTCTATGAAAGTAGTTTCTGC
GGATGATGGCATTGATCCTTCGAAAGCAGCATGTCTTAGCAACACAAAACGAGGGTTTCGCTCGT
TATAGGAGTTAACCAAAAACGTCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAA
TTTTCGTTTCATCCTGTTAAGGACAAGCACACTTGTCACTTGTTCATAGGTCAAGTGTTCATATG
TCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGG
CCCCCGTCGATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTAACGCGT
TAGCTGGGCCCCCGATCAAACGCTTGCAGACCAAGGACGAACACTCATCGTTTACGGCATGGACT
ACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCA
Done.