Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: KX171638
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 364070
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 1 of 3
Found at i:36 original size:5 final size:5
Alignment explanation
Indices: 26--64 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
16 CGCAGGGGTT
*
26 CTCCC CTCCC CTCCC CTCCC CTCCC ATCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
65 GGGGTTTGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.03, C:0.77, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 1 -- 25
GCAGAAGTCTCTTCGCGCAGGGGTT
Right flanking sequence: Indices 65 -- 564
GGGGTTTGCAGAAGTGTGTTTCAACCAACCTTCTGCACACTTTAAAGCAAGCAAGCAAGCAAGCA
AGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAAAAGGACTAACTTTTGCACTCATT
CGGCCCGTTCACTCATTCGAAATTACAAAGGTAGGCACGGATAAAAGGCACTCAAAAAAGTGGCA
AGCAAGCAAGCAAGCAAGCAGAAGTTACCCGGCGGGCGGGTCCAACCACAGGAGGGCCGGCTCCC
CCTTCTAACTCACTTACCCAGCTCGAGCGAAAGGGAATCATCGCCCGGGCGGGAGGGGTACCCCT
ACCCCATTAATGCTCCCCCGGGAAGCCTGCCTGCTGTTTGCCGGCGCTAAGGCTGCCGCTAAGGC
GGCTTTAAAGTTGCAGGCTGCCGCTAAGGCTGCTTCTAAAGCAGGCGCTAAGGCGCAACTGTTTG
GGGGAGCCTTTGCAGCATTTCCGTCAAATGACCTGGCCTCCCTGG
Found at i:118 original size:4 final size:4
Alignment explanation
Indices: 109--170 Score: 124
Period size: 4 Copynumber: 15.5 Consensus size: 4
99 GCACACTTTA
109 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
157 AAGC AAGC AAGC AA
1 AAGC AAGC AAGC AA
171 AAAGGACTAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 58 1.00
ACGTcount: A:0.52, C:0.24, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGC
Left flanking sequence: Indices 1 -- 108
GCAGAAGTCTCTTCGCGCAGGGGTTCTCCCCTCCCCTCCCCTCCCCTCCCATCCCCTCCCCTCCG
GGGTTTGCAGAAGTGTGTTTCAACCAACCTTCTGCACACTTTA
Right flanking sequence: Indices 171 -- 670
AAAGGACTAACTTTTGCACTCATTCGGCCCGTTCACTCATTCGAAATTACAAAGGTAGGCACGGA
TAAAAGGCACTCAAAAAAGTGGCAAGCAAGCAAGCAAGCAAGCAGAAGTTACCCGGCGGGCGGGT
CCAACCACAGGAGGGCCGGCTCCCCCTTCTAACTCACTTACCCAGCTCGAGCGAAAGGGAATCAT
CGCCCGGGCGGGAGGGGTACCCCTACCCCATTAATGCTCCCCCGGGAAGCCTGCCTGCTGTTTGC
CGGCGCTAAGGCTGCCGCTAAGGCGGCTTTAAAGTTGCAGGCTGCCGCTAAGGCTGCTTCTAAAG
CAGGCGCTAAGGCGCAACTGTTTGGGGGAGCCTTTGCAGCATTTCCGTCAAATGACCTGGCCTCC
CTGGCTTTACCGTCCTATGCTCCCGCAGCTCTGCCGGTTCCCATATCCGCTCTGCTGGGCCCCTA
CTGCCGGCCGGCTTTAAAGTTGCAGGCCGGCTGGGAGTGCGCCTG
Found at i:2575 original size:5 final size:5
Alignment explanation
Indices: 2565--2593 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
2555 CGCAGGGGTT
2565 CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
2594 GGGGTGGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 2065 -- 2564
TGGATCGATAGATTGAATCATCGCAGGCTGAGGTGTAATAGTTCTCCACCCCGTGAGAATGGCTA
TTATTATTTCGACTAGGTAGGAGATCCAAGGGGCAACTACGGTATCCAAGTCAAGGTATGTGCAG
AAGGGTGTTCTCCGAGCGCAGGGGGAGGTGGCAGGAGTTCTTGACCGAGCGCAGGGGTAACTTAT
TCCCCACTTCAGAGGGATATAAGAGGGAGGTGGCAGGGGTGGACGACTTTTTGCTGGCTGAACCA
AAAGAACTTACCTTTTGCGGCACGGCAGAAGTTGCTCTTCCCTTCACCTCGCTACGCTCGGTAAA
GGTAAGACCTTTTTTGGGGTGGGGAAGACCTCCAAAAAAATGCGCAGCGGGGAGGGGAGAAGCAA
GAAAGATCCAAAAGTTCCTCGGAGAACCCCTGCGCTCGGCCCTTCTGCACATACCTTTTTTTTGG
ACCAGAAAGACTTCTGGCAGAAGTCTCTTTCTGAGCGCAGGGGTT
Right flanking sequence: Indices 2594 -- 3093
GGGGTGGAAAAGAACTTCTGCTTTCAAACAACCAACAACCTTTTGCCAACAACCAGAGACTTATG
CCTGTTCCCCGGGTTGTCTCTTGCGTGTTGAATCTTCGCGTAGCGAAGAACTTCGCTACTGGTTT
CAAACAACCAACCAAACTTCTGCCTGCCAAGAAGGGCGGTTGAATCTTCGCGTAGCGAAGTGTTT
AAAGTGTGCAGGAGAGACTTCTGCTTCGCGCAGCGGGGAAGAGCTCTTCTCCCTTTTTTTAGGAA
ATCCGTCCGAAAAAGATTGATTGCTGAGCGCAGCGGGGAAAAGCGAAGGCTACAAAAAAGCTATC
TGAGCGCAGCGAAGCGAAGAGAGTGCCAGGGGGAACCACTCTCCCACCCCTGCAGGGGGAAGACA
CTCGTAAGACCGACTTTGCCAGGAGTCCCGTCGTGAGAGTGTCTCCCGTTGCGCAAGGGACTCCT
TGGATCTCCGCCGCCCCCCGTACTCAGAGGAATATAAAGGGGTGG
Found at i:4685 original size:47 final size:47
Alignment explanation
Indices: 4631--4727 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 47
4621 AATCCAAGGA
*
4631 CCCGCCTCCCCAGAGGGAGAGTTATCCGGGGGGGAAGACACTCGGAT
1 CCCGCCTCCCCAGAGGAAGAGTTATCCGGGGGGGAAGACACTCGGAT
**
4678 CCCGCCTCCCCAGAGGAATCGTTATCCGGGGGGGAAGACACTCGGAT
1 CCCGCCTCCCCAGAGGAAGAGTTATCCGGGGGGGAAGACACTCGGAT
4725 CCC
1 CCC
4728 TAACGGGTGG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.13
Consensus pattern (47 bp):
CCCGCCTCCCCAGAGGAAGAGTTATCCGGGGGGGAAGACACTCGGAT
Left flanking sequence: Indices 4131 -- 4630
TTCTGCACACTTTTTGGAACCAAGCAAGAAGTTAGTCTCTTCTGCTTCCAAAAGAACGCGCAGAA
ACCAACCCAAACAAACAACCCTTCTGCACACTTTTTGGAACCAAGAAAGGTTGGTTGCAGAAGAG
ACTTCTGCTTCGCGCAGCGAAGTGAAGGAACCAAAAGCGCTTTCTGAGCGCAGCGAAGAACTTCT
GCGGATCTCAAAAGAGAGTTCTGAGCGCAGCTACCGTGCCAGGCACGGCACGGGGGAAGGGCCTT
CTGCAAGCAAGCAACAAACAACCTTCTGCACGAAAAGTTTCGAATGAACTTCTGCTGCCGTACGG
GGTGGCAACTTGGATCCCACCCGTTGCTTTCGCAACGGGTGGGATCCAAGGACCGGTAAGTCCAC
TCTCCCTTTACTTGGATCCCACCCCTGCCGGGGGAAGACACTCGATCTTAAAAAAAAAAAAAAAA
GGGTGGGATCCAAGTAAAGGGAGAGTGGACAAGGGAATCCAAGGA
Right flanking sequence: Indices 4728 -- 5227
TAACGGGTGGGATCCAAGTAAAGGTATGTGCAGAAGGGTGTTCTCCGAGCGCAGGGGGAGGTGGC
AGGAGTTCTTGACCGAGCACAGGGGTTTGAAGAGGTGGCAGGGGAAGGGAGAGTGGTTCCCCCTT
GACGGTCGAGTGTCCCTTACGGGTCCTTGGATCCCACCCGTGCCGGGTGCCTTGGATCCCACCCC
GTACGGCAGCCTACTCCAGAGGTGCGTGCAGAAGGGTGTTCTCCGAGCGCAGGGGAAGAGTTTAA
GGAAGAGGGAAGACACTCGACCGTTTTGGATACCGTAAAAGTCCACTCGTTCCCCCGGGAGCCCG
GCTTTGTTCACTCCTTGGATACCACCCGTTGCGCAGGGTGGGGAGGGGGCAGGGGAAGTTAGTCC
TTTTGGATCCAAGGACTCCATTGACGGGAGAGACACTCTCACAACTCGGATCCCCTCCCCAGTCC
CCCTACGGTCCACTCTCCCACCCCGTACGGCAGCCTACTCCAGAG
Found at i:4934 original size:25 final size:25
Alignment explanation
Indices: 4882--4934 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
4872 CCTTACGGGT
* **
4882 CCTTGGATCCCACCCGTGCCGGGTG
1 CCTTGGATCCCACCCGTGACGGCAG
4907 CCTTGGATCCCACCCCGT-ACGGCAG
1 CCTTGGATCCCA-CCCGTGACGGCAG
4932 CCT
1 CCT
4935 ACTCCAGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.11, C:0.43, G:0.26, T:0.19
Consensus pattern (25 bp):
CCTTGGATCCCACCCGTGACGGCAG
Left flanking sequence: Indices 4382 -- 4881
AAGGGCCTTCTGCAAGCAAGCAACAAACAACCTTCTGCACGAAAAGTTTCGAATGAACTTCTGCT
GCCGTACGGGGTGGCAACTTGGATCCCACCCGTTGCTTTCGCAACGGGTGGGATCCAAGGACCGG
TAAGTCCACTCTCCCTTTACTTGGATCCCACCCCTGCCGGGGGAAGACACTCGATCTTAAAAAAA
AAAAAAAAAGGGTGGGATCCAAGTAAAGGGAGAGTGGACAAGGGAATCCAAGGACCCGCCTCCCC
AGAGGGAGAGTTATCCGGGGGGGAAGACACTCGGATCCCGCCTCCCCAGAGGAATCGTTATCCGG
GGGGGAAGACACTCGGATCCCTAACGGGTGGGATCCAAGTAAAGGTATGTGCAGAAGGGTGTTCT
CCGAGCGCAGGGGGAGGTGGCAGGAGTTCTTGACCGAGCACAGGGGTTTGAAGAGGTGGCAGGGG
AAGGGAGAGTGGTTCCCCCTTGACGGTCGAGTGTCCCTTACGGGT
Right flanking sequence: Indices 4935 -- 5434
ACTCCAGAGGTGCGTGCAGAAGGGTGTTCTCCGAGCGCAGGGGAAGAGTTTAAGGAAGAGGGAAG
ACACTCGACCGTTTTGGATACCGTAAAAGTCCACTCGTTCCCCCGGGAGCCCGGCTTTGTTCACT
CCTTGGATACCACCCGTTGCGCAGGGTGGGGAGGGGGCAGGGGAAGTTAGTCCTTTTGGATCCAA
GGACTCCATTGACGGGAGAGACACTCTCACAACTCGGATCCCCTCCCCAGTCCCCCTACGGTCCA
CTCTCCCACCCCGTACGGCAGCCTACTCCAGAGGAATATAAGAGGGAAGTCCTTGGATCCCTTGT
CCTTGGATACCGGTCCACTCTCCCGACTTTTAGATTCTCTCTTCGCTGACCCCGCCCGGAACGGC
GAGGCGCTTGGCACCAGTCTTTTTGGCAAGGCAAAAAAAAGAAAGTTCTTCTGGTTATTGAATTC
TATATGGCTCTTCTCTTCAATCTCTGAATTGATAGCCTTTTCTGG
Found at i:6362 original size:25 final size:24
Alignment explanation
Indices: 6338--6383 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6328 TAAAGGGAAC
6338 CCCCCGAG-TGGACTTTCAAAAGAA
1 CCCCCGAGCT-GACTTTCAAAAGAA
* *
6362 CGCCCGGGCTGACTTTCAAAAG
1 CCCCCGAGCTGACTTTCAAAAG
6384 TAAATACCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.28, C:0.30, G:0.24, T:0.17
Consensus pattern (24 bp):
CCCCCGAGCTGACTTTCAAAAGAA
Left flanking sequence: Indices 5838 -- 6337
TCATGGACCGTCCATCCGTCCGGAAGCAGCGACCCATTCCATCCAGCGTGAGGAGTTCGAGCCAG
CGGCCCTCAGGCAAGCAAAGCATGCTTCCCGAACCTAAAGCCTCTGAGAGCATACGTCCATTCTC
GCCTTACATCCGGATGGGGTCCCCTTTCCCAAACTACCCGACCCGCTTCTTAGACCTTGACCAGC
ACTTTATTTATAAGGGGGGCCAGCCAATAAAGCTTGCTTGCTTGTTGATCCGTGCCTACCTTTGT
AAGCGAAACAACCAACCGCCCCTCTCTTTATCCCAAAACTGATGAATTCGTGCCACTACGAAGGG
TGGTGGGGAGGGGGCCCCTCCGGGGGAAGGGCCCCCTCGCCACTATTACTCTGAAAAAAGGGGCC
CGGCCCGAGGCAGAAGGTTGGAAGTTATTGACCGAGCGCAGGGGAAGAGAACTTCTGCGGATAGT
GGATGGCAGGTAGAGGGTACCATTAGGGACCCTTTTAAAGGGAAC
Right flanking sequence: Indices 6384 -- 6883
TAAATACCCGTCCTTCCATTCAGAGTAATACAAGAGGAAAGAGGGGGAATACCCGATTGAAAGGG
GGAAAGCCAAGGGGGGTGGTTAGAAGTAGCGCTTTCAATCCACCCGACCAAGGGCGGGCGGGTAA
ATCACGTATATAGAGAAAGCGCTTCTTGGAGCGCCGGCCTCGCACTAACTTGCCTCCCGTACTCA
GAGGGTATGAGTGCCTGGGTATTCGTGCCACTTCTTTTCTTAAAGTGGCCAAACAAACTCATTCA
AACAACCAACCAACCAAACAAACAACCAACCGGCACTTTTATCACGAAGTGCAAAAGTTTGTGGC
TTGCTTTCATTCGTGCCACTTTTTTTTAAAGTGGCCCGTTAAAATCAGAACTGTTCTGCTTTCAT
TCGTGCCAAAGGGGTGCGGTGCGGGGGAAGCGGTGCCCCGTGCCACTTTTAATGGCAAGAAACCA
ACTTCTCGGCACGCACGGCAGAAGGTTGTTTGTTGCTTGCTTGCA
Found at i:6663 original size:16 final size:16
Alignment explanation
Indices: 6642--6674 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6632 CAAACTCATT
*
6642 CAAACAACCAACCAAC
1 CAAACAAACAACCAAC
6658 CAAACAAACAACCAAC
1 CAAACAAACAACCAAC
6674 C
1 C
6675 GGCACTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.42, G:0.00, T:0.00
Consensus pattern (16 bp):
CAAACAAACAACCAAC
Left flanking sequence: Indices 6142 -- 6641
AATTCGTGCCACTACGAAGGGTGGTGGGGAGGGGGCCCCTCCGGGGGAAGGGCCCCCTCGCCACT
ATTACTCTGAAAAAAGGGGCCCGGCCCGAGGCAGAAGGTTGGAAGTTATTGACCGAGCGCAGGGG
AAGAGAACTTCTGCGGATAGTGGATGGCAGGTAGAGGGTACCATTAGGGACCCTTTTAAAGGGAA
CCCCCCGAGTGGACTTTCAAAAGAACGCCCGGGCTGACTTTCAAAAGTAAATACCCGTCCTTCCA
TTCAGAGTAATACAAGAGGAAAGAGGGGGAATACCCGATTGAAAGGGGGAAAGCCAAGGGGGGTG
GTTAGAAGTAGCGCTTTCAATCCACCCGACCAAGGGCGGGCGGGTAAATCACGTATATAGAGAAA
GCGCTTCTTGGAGCGCCGGCCTCGCACTAACTTGCCTCCCGTACTCAGAGGGTATGAGTGCCTGG
GTATTCGTGCCACTTCTTTTCTTAAAGTGGCCAAACAAACTCATT
Right flanking sequence: Indices 6675 -- 7174
GGCACTTTTATCACGAAGTGCAAAAGTTTGTGGCTTGCTTTCATTCGTGCCACTTTTTTTTAAAG
TGGCCCGTTAAAATCAGAACTGTTCTGCTTTCATTCGTGCCAAAGGGGTGCGGTGCGGGGGAAGC
GGTGCCCCGTGCCACTTTTAATGGCAAGAAACCAACTTCTCGGCACGCACGGCAGAAGGTTGTTT
GTTGCTTGCTTGCAGAAGGCCCTTCCCCCGTGCCGTGCCTGGCACGGTAGCTGCGCGAAGATGGA
GGTCCTTGGGCCTTCCCCTTCTTTTATTGCAGGGGAAAAGAACTTCTGCTCTTCCCGGAGGGGAG
GGGAGAACCCCTGCGCTCGGAAAACTTCTGCTTCCCCTTCTTCGCACGGGGGAAGGGAAAGCTGC
GCTCAGTAATCTTTTTCGGATTTCCAACTGCCTTTAAAGAGCTTGCTTGCTTTTCCCCGCTGCGC
GAAGCTATTCCCGGAGTTCCAAAAAGAAAGTGTGCAGAAGGGGGT
Found at i:7513 original size:4 final size:4
Alignment explanation
Indices: 7504--7547 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
7494 CTTGGTCCAA
7504 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
7548 TTAGTTCTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
AAAG
Left flanking sequence: Indices 7004 -- 7503
GAACCCCTGCGCTCGGAAAACTTCTGCTTCCCCTTCTTCGCACGGGGGAAGGGAAAGCTGCGCTC
AGTAATCTTTTTCGGATTTCCAACTGCCTTTAAAGAGCTTGCTTGCTTTTCCCCGCTGCGCGAAG
CTATTCCCGGAGTTCCAAAAAGAAAGTGTGCAGAAGGGGGTTGGGTTTCTGCGCATTCTTTTGGA
GGTCCAAACCAAAAAGAAAGTGTGCAGAAGGGTTGGGTTGGGTTGGGTTGGGCGCATCTTTTTGT
TTGTTTTGTTTTGGAGGTCCAAAAAAAGCAAGCAAGACTTTCGTGTGCAGAAGAAACTAACTTCT
GCTGCGCGAAGATTCGGTCCAAAAGTGTGCAGAAGGTTTGTTGTTTGGGTTGGGTTGGTTTCTGC
GCGAAGCAGAAGATCTTTCTTGTCCAAAAAAAGCAAGACGCAGTTTCGTGTGCAGAAGAAAAGAA
GTTCTTCTGCGCGAAGATTCAACAACCTAACCTTTCTTGGTCCAA
Right flanking sequence: Indices 7548 -- 8047
TTAGTTCTTAGCTGCGCTCAGATTCTTTTGTTCACACCTTTGGGGAGGGGAGGGGAAGGGCCTTC
CCCCAACCGTGGCCGAACAACCTTTAAGGTTGTTTCGAATAACAACCTTTTCCCCTGCGGAAGCC
AGCCCGAATTCGAAGTTGCCGAACAACCTTTAAGGTTGTTTTCCCCCGTGCAAGCCTACCTTTGT
AACTTTTTGGGCTTGCCGAACAACCAACCTTCCTTTAAGGTTGTTTTGAATAACAACCTTTTCCC
CTGCGGAAGCCCTCAGACCCACGTGCCTAAAAGCTATGAGTGCCAGTGAGTTTGTTGGCAAACCT
GAAAGTTGATTCGTGCCTTCGCTGGGGGAAGGGCCCTTCCCCTGCGCTCAGAGTCTTTTGGAAGT
CCTTCGCTGGGGGAAGGGCCCTTCCCCTGCGCTCAGATTCAACCTTTTGGCAGAAGAACTTCTGC
AAACCCCGGAAGGGGAGGGGAGAACCCCTGCGCTCAGATAGCTTT
Found at i:13042 original size:18 final size:18
Alignment explanation
Indices: 13019--13062 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
13009 TCCCCTTCAC
*
13019 CGAGTGGGCTTTTACGGT
1 CGAGTGGACTTTTACGGT
13037 CGAGTGGACTTTTACGGT
1 CGAGTGGACTTTTACGGT
13055 CGAGTGGA
1 CGAGTGGA
13063 AAAGGGAGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.39, T:0.30
Consensus pattern (18 bp):
CGAGTGGACTTTTACGGT
Left flanking sequence: Indices 12519 -- 13018
ACACTCCCGTACTCAGAGGAAGAGGGAATACACTCGTTAGTAAGACCTTAACGGTAGTGCCGGTT
GGTTGTTTGGTTCATTCGAAACAACCTTTTCGGTTGGTTGTTGGGGTGCCGTGCCTTTGTCATTT
CGAAACAACCGCACGGCAGAAGTTCACACTTTTTGCTTGCTTGCTTGCAGGGTAAAAGGTTCTTT
CCCCTGCAACCCCCGTGCCGTGAACCTTCGCAAGCAACTTTTGCCCAGCCGTTCACCTGCTTGGA
GAACAACACGCAACCCAAGAAGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTCTTCAGGTTG
TTTGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACACCCTTCTGCACCTCTGGAGTAGGCTG
CCGTACGGGGTGGGATCCAAGGCCCAGGTCTTCCCTTCCCGAGTGGACTTCCTTAAACGGTATCC
AAAACGGTCTTCTTCCCCTTCACGTTTTCACTTCTTCCCCTTCAC
Right flanking sequence: Indices 13063 -- 13562
AAAGGGAGGGTCTTCCCGTCTTCCCCCGCCTCCTCAGAGGAATAGTTCTCCGGGGGGACTCGGGA
AGACCTTGATTTGGATACCGTTTACTGCCAGTCCACTCGACCCAAGAAGGCGTGCGTTTTGGATC
CCACCCTTGCGCAACGGGATCCAAGGAGGGCTTACCGGGAAGTCCACTCTCCCTTCCCCTGCCAC
CTCGCAGGGGAAAAGCCCTGCGCTCGGTAAAGAACTCCTGCCACCTCTCTCTTATATTACTCTGA
AGGTTGGTTGTTTGTGGGGAAAACCTGCGCTCGGAGAACTTCTGTACATACCTTTACTTGGATCC
CACCCTTGACGGGAGACACTCTCACGACGGGTCCCGACCGACGTACTTTTAGGACGGTTGTTTTG
CCCGACCGACCGACGAGTAATCCCCACCCCCTCCTGCCAGCCGCCTGCCCGGGCGGAGCAAGCCA
GTACATATGCTGCGTTGAGAATGGGTATTTTCCCCTCCCCTCCCC
Found at i:17302 original size:5 final size:5
Alignment explanation
Indices: 17292--17332 Score: 64
Period size: 5 Copynumber: 8.2 Consensus size: 5
17282 CAGCTCTCAC
* *
17292 GGGAA GGGAA GGGAG GGGAG GGGAA GGGAA GGGAA GGGAA G
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA G
17333 AACCCCGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (5 bp):
GGGAA
Left flanking sequence: Indices 16792 -- 17291
ATAAGAGCCATAGGTGATACCGGCGAAACCCAGCCAGATATAAATTCTCTGGCAGGTAGTCAGAG
GACTCATAGTACCCGCCATGAAGGGTAACCCATGGTGAGGGGAAGGCGCTAGTTCGAGGACTTAG
TCAGTCGTCTTTTCTTCGTCCCTTCACTATTCGCTTTCTCCCAGCAGCAGGAAAGGAGTCTAGAT
GTCTGCCTAGCTTTGGCAGATTTTACTCAACGCAATCTACAAACTCAAATCCCACGAATCCCTTT
TAATAAAAAGGATAAATCCGACTCAGTGCGGAATGGGGTTGATCGTCGTCTTGTGGATCTTTGGA
TCTCTAGTGACCGGAGGGACAATACATCCCACAGGATTCGAGGTCTTTTTTTCGCGAAGCGATCG
ATATGCCGAAAGAGATCGATCATCTCGGGCGGCGGCGGCCCAACGTTCGAAACGGGTTCGGGCGA
GGGGGGCGTTGGCGAGTTCTTTTCTTTTTTTCGTGCAGCTCTCAC
Right flanking sequence: Indices 17333 -- 17832
AACCCCGGTTATCTTCCTAAGCGGCAGGAGCGGGTACCTCAGAACATACAGCCCCTTTGCAACTG
CGTGCTTGATGCATGAGTACCACCAGTAGCCAGGGATAAAAGTAAACCTAGGAGATCCAAGGGAA
ACTCCTCGGCTTGCCACTTTTTATAGAAACTAACTTTTCGTGCAACTTTTAAGAAGGGCTGCAAA
CTTCTGCCGTGCAAGCCTACCTTTGTAACTTTTTGGGCTTGCGGTTGGTTGTTTCGGATAACCCA
AAAAGAAAGTTCCTGGCACGGGACTTTTCGGCCAGGCCGTTGCACTTTTAATTGAAGTGGCACAT
TGAGGTCCAAAACTTATTCCCACTTGCCACACAAACTAACTTTTATCACGAAGTGTAAAAGGTTG
TTTGTGGCAAACTTCTGCCGTGCCTATCTTTGGTTCCAGGGCCTTCCCCCAACCGTGGCGTTTCG
AAGTTTGTGGCAACCCAATTTTGGTTGTTTCCGTGCCTTCCCGTG
Found at i:21762 original size:4 final size:4
Alignment explanation
Indices: 21753--21840 Score: 176
Period size: 4 Copynumber: 22.0 Consensus size: 4
21743 CCCTACCTTT
21753 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
21801 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
21841 AGAAGGTTCT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 84 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 21253 -- 21752
TGCGGGGTTCTCCGGCCGTTTTTGGCAGGGCAGCAAAAAAAAAGCAGAAGTTTCTTTTTTTTGGA
CCTCCAAAAAGAAAGCAGAAGTTCTTCGCGCAGCGAAGCAGAAGTTCTTGCCACAAGAAGAAAGT
TCTGAGCGCAGCTACCGTGCCGGGGAAGGCAACTTTATCTTTGGTTGTTTGGTTGGCCGGATAAA
AGTTGCCGTGCCTTCACTCCGCTGCGCGAAGCAGAAGTTCACACAAACAACCCGGCAGAAGTTCT
TGGTCCACTTCGCTGCGCGAAGCAACCAGAAGGGTTGTTCCCGCTGCACGCCTTCTGGGTCCTTT
GTAATTTCGAAACAACCTTAAAGGGGCACGGCAGAAGGTTGTTTGTTGCAGAGCTTTTTGGTTCC
AAGGTGTGCAGAAGGTTGTTTGTTGCTTGCTTGCAGAAGGTTCTTTCCCCCGTGCCAGCCTACCT
TTGTAACTTCGAAACTCTTCGTGCAGAAGTTCCTACCCTACCTTT
Right flanking sequence: Indices 21841 -- 22340
AGAAGGTTCTCCGTAAAAGTTGCCGTGAACCCGCACGCAAGCAACTTTTGCCCGCTGCGAAATTT
TGGCACTCTTTTTTGCAGGCAGGAAATCCGTCAAACCTGTAGGGTTCTCCTTCCCGCACGGGGGA
GAGCTGCGCTCAGAAAGCGCTTTTGTTTAAACCTTCCTTTTCCCCGGTGGCGTTTCGCTTACAAA
GGACGGATTTCAAAAAAAGAGTGCAACTTCTGCGGGGTAGGGTTGGGTTAAAAGTTGGGTTGGGT
TGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGCGGGAAGGCAACAACTTAAGTTGTTGAGTT
CTTTTTGGGCAGAAGTTTGGTTGGCCCGTTGCACACCTTGTTTTTGGTTCCAAAAAGTGTGAACT
TCTGCCGAGCGGTTGTTTCGAAACAACCTTTTCGGCACGGGGGAAAGAACCTTCTGCAAGCAAGC
AAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCA
Found at i:22295 original size:4 final size:4
Alignment explanation
Indices: 22286--22345 Score: 120
Period size: 4 Copynumber: 15.0 Consensus size: 4
22276 AGAACCTTCT
22286 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
1 GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA
22334 GCAA GCAA GCAA
1 GCAA GCAA GCAA
22346 CTTCTGCACT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00
Consensus pattern (4 bp):
GCAA
Left flanking sequence: Indices 21786 -- 22285
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCAGAAGGTTCT
CCGTAAAAGTTGCCGTGAACCCGCACGCAAGCAACTTTTGCCCGCTGCGAAATTTTGGCACTCTT
TTTTGCAGGCAGGAAATCCGTCAAACCTGTAGGGTTCTCCTTCCCGCACGGGGGAGAGCTGCGCT
CAGAAAGCGCTTTTGTTTAAACCTTCCTTTTCCCCGGTGGCGTTTCGCTTACAAAGGACGGATTT
CAAAAAAAGAGTGCAACTTCTGCGGGGTAGGGTTGGGTTAAAAGTTGGGTTGGGTTGGTTGTTTG
AACTTCTGCGCAGCTTTCCCCCGTGCGGGAAGGCAACAACTTAAGTTGTTGAGTTCTTTTTGGGC
AGAAGTTTGGTTGGCCCGTTGCACACCTTGTTTTTGGTTCCAAAAAGTGTGAACTTCTGCCGAGC
GGTTGTTTCGAAACAACCTTTTCGGCACGGGGGAAAGAACCTTCT
Right flanking sequence: Indices 22346 -- 22845
CTTCTGCACTCATTCAAAGGGGATCCGCCTACCTTTGTAAGCGTGTTAAAGTGTGGCAAGTCGGG
GGATTTCCAACACGCACGCTTTTGCCAAAAGAGCTTGCTTGCTTGCTTTCTGAGCGCAGCGAAGA
ACACCGGACGGATTTCCAAGAGTTCTGAGCGCAGCTACCGAACTTTGAACCACTCTCCCTGCCAC
CTCGCAGAAGTTACCCTTCCCCGGTGCTCGGTCAAGAACTTCCAACCTTCTGCGCAGAAGGGTGT
AAGTTCTCGCAGCCCCAACTCCTGGCTCGGTAAAGAACTTCCAAACTCCTGCCACCTCTGGAACC
CCCTTATTCTTCGTGGCACACCTTGGATTCGTGGCACTCATTGGGCGCTTGCCGGGGGCGAGTTG
CGGTGGGTGGTGCCGGGGGGCCGGGTAACGGGCTGATGAGTGCCTGATCGAGTCGGGACGAACAA
ATAGCTAACCTCAAGGCTGGCTACAAGTAGTATAGCCGAGGGAAG
Found at i:22714 original size:18 final size:18
Alignment explanation
Indices: 22680--22714 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22670 CCCCTTATTC
*
22680 TTCGTGGCACACCTTGGA
1 TTCGTGGCACACATTGGA
*
22698 TTCGTGGCACTCATTGG
1 TTCGTGGCACACATTGG
22715 GCGCTTGCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.26, G:0.29, T:0.31
Consensus pattern (18 bp):
TTCGTGGCACACATTGGA
Left flanking sequence: Indices 22180 -- 22679
GTTTGGTTGGCCCGTTGCACACCTTGTTTTTGGTTCCAAAAAGTGTGAACTTCTGCCGAGCGGTT
GTTTCGAAACAACCTTTTCGGCACGGGGGAAAGAACCTTCTGCAAGCAAGCAAGCAAGCAAGCAA
GCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAACTTCTGCACTCATTCAAAGGGGATCCGCC
TACCTTTGTAAGCGTGTTAAAGTGTGGCAAGTCGGGGGATTTCCAACACGCACGCTTTTGCCAAA
AGAGCTTGCTTGCTTGCTTTCTGAGCGCAGCGAAGAACACCGGACGGATTTCCAAGAGTTCTGAG
CGCAGCTACCGAACTTTGAACCACTCTCCCTGCCACCTCGCAGAAGTTACCCTTCCCCGGTGCTC
GGTCAAGAACTTCCAACCTTCTGCGCAGAAGGGTGTAAGTTCTCGCAGCCCCAACTCCTGGCTCG
GTAAAGAACTTCCAAACTCCTGCCACCTCTGGAACCCCCTTATTC
Right flanking sequence: Indices 22715 -- 23214
GCGCTTGCCGGGGGCGAGTTGCGGTGGGTGGTGCCGGGGGGCCGGGTAACGGGCTGATGAGTGCC
TGATCGAGTCGGGACGAACAAATAGCTAACCTCAAGGCTGGCTACAAGTAGTATAGCCGAGGGAA
GCCCCCAGAGACTGGATGAGTTACAGGTCGCAGGGCGTGCCGGGAATGGGTAAACTAGGCTCTGG
AACACCCGCTAACAGCTATATTGCTGATCCGGATAACGATAGTGGGATACTATGGTGGGTGGTGT
GGCCGAATAACTGACAGGAGGCGCTATCCACTCGGTAATTGCAAACTTCCCCTCCGTTCCCTAGG
CATCCCTGGACATGCATCGATAGGCACTCCAGACGACTTTTCCAAGTGGAGGGCCGGGTCTTGGG
GGGTCCAGAGAAAGCTAAGATTATTCCTAGGTTGTTCCTTTGGGTTCCCTTTCAGCTTTCTCGGA
CCGGCCCCCTCCCCTCCCCTCCCCTCCCTCGGGGCCGAAGGCGGG
Found at i:25926 original size:41 final size:43
Alignment explanation
Indices: 25881--25962 Score: 132
Period size: 41 Copynumber: 1.9 Consensus size: 43
25871 TTTTGGGCTG
25881 AAGGAGGGAGAGTGGGAC-AC-GATCCCGACTTTTAAGGTTGC
1 AAGGAGGGAGAGTGGGACAACTGATCCCGACTTTTAAGGTTGC
25922 AAGGAGGGAGAGTGGGACAACTTGGATCCCGACTTTTAAGG
1 AAGGAGGGAGAGTGGGACAAC-T-GATCCCGACTTTTAAGG
25963 CTGGCACATT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
41 18 0.49
42 2 0.05
45 17 0.46
ACGTcount: A:0.28, C:0.16, G:0.37, T:0.20
Consensus pattern (43 bp):
AAGGAGGGAGAGTGGGACAACTGATCCCGACTTTTAAGGTTGC
Left flanking sequence: Indices 25381 -- 25880
GGGAAACTTAAGGCACGGGGCCGTGCTAGCCGGGAGAATACACTTTAATTGAAAAGAGTGGACCG
GTCGAGTGTCCCTTATGGGTCCTTGGATCCCACCTTCCCTTCCCTTCCCTTCCCTGGAACTTCCC
TTCCTTGAATTTGTTTGTTTTCCGGAAGGAAGGAGGGAGAGTGGTTCCTTGGATCCCGACAACTT
TTAACCCTCGTGCCTTAATACACTCTAAAAGTAGGGATCCAAGGGGATCCAAGGAGTGCCTGGAG
ATCCGTGCCTACCTTTGTAAGCGAAACAACAACCCGCAGAAGTTAGTTCTTTTAACTCGGTTCAG
TTGTTTGCGCTGCTTTCATTCGTGCCACAGGTTGCCTGGCAAATACAGTTGTCGGGATCCAAGGT
GTCCCACTCTCCCGACTTAGTCTTTCAAGGAAGGAGGGAGAGTGGTTCCTTGGATCCCGACAACT
CGGATCCCTTCGTGCCACTACGAATGAGTGAACTTTTTTGGGCTG
Right flanking sequence: Indices 25963 -- 26462
CTGGCACATTCGTGCAAGAGGGAAGGAGGGAGAGTGGTTCCTTGGATCCCGACAACTGTTTCCAT
CCGTGCGGTGGCACTCATTCGAAGAATGAGGGCTTCCGCAGGGGAAAAGGTTGTTATTCGAAACA
ACCTGGCACGGCCACGGGGAAGGCCCTTCCCCAAAGGTAGGCACGGATAAAAGCCACTTTTAAAG
AATGAGGGAAGGAGGGAGAGTGGGACAAAAGGGAACCTTCGCACGCCAACAAGTAAGTCCCCGCT
GCGCTCAGAAAGCAAGCAAGCAAGCGGGAACTGGCAGGCAGGCACTTAAAGCGTGCGTGCGTGCG
TGTTGGAAATCCGTCAAGAACACCACACTTTGTGTGCAGAAGAACTTCTGCAAACCCCGGAGGGG
AGGGGAGGGGAGGGGAGGGGAGGGGAGAACCCCTGCGCTCAGAACTTTACTTTCTTTTGGAAATC
CTTGGATCCCGACTTGCCACACTTGCCAGCTTACAAAGGTAGGCA
Found at i:26356 original size:5 final size:5
Alignment explanation
Indices: 26346--26379 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
26336 TGCAAACCCC
26346 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
1 GGAGG GGAGG GGAGG GGAGG GGAGG GGAGG GGAG
26380 AACCCCTGCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.79, T:0.00
Consensus pattern (5 bp):
GGAGG
Left flanking sequence: Indices 25846 -- 26345
CGTGCCACTACGAATGAGTGAACTTTTTTGGGCTGAAGGAGGGAGAGTGGGACACGATCCCGACT
TTTAAGGTTGCAAGGAGGGAGAGTGGGACAACTTGGATCCCGACTTTTAAGGCTGGCACATTCGT
GCAAGAGGGAAGGAGGGAGAGTGGTTCCTTGGATCCCGACAACTGTTTCCATCCGTGCGGTGGCA
CTCATTCGAAGAATGAGGGCTTCCGCAGGGGAAAAGGTTGTTATTCGAAACAACCTGGCACGGCC
ACGGGGAAGGCCCTTCCCCAAAGGTAGGCACGGATAAAAGCCACTTTTAAAGAATGAGGGAAGGA
GGGAGAGTGGGACAAAAGGGAACCTTCGCACGCCAACAAGTAAGTCCCCGCTGCGCTCAGAAAGC
AAGCAAGCAAGCGGGAACTGGCAGGCAGGCACTTAAAGCGTGCGTGCGTGCGTGTTGGAAATCCG
TCAAGAACACCACACTTTGTGTGCAGAAGAACTTCTGCAAACCCC
Right flanking sequence: Indices 26380 -- 26879
AACCCCTGCGCTCAGAACTTTACTTTCTTTTGGAAATCCTTGGATCCCGACTTGCCACACTTGCC
AGCTTACAAAGGTAGGCACGGATCCCCGAAAAAGTTATCCGTGCCTTCGCAAGCAACCCAACCCA
ACCCAACCTTTTGCCCGCTGCGAAATCTTGGCATAACTTTTTCGGATCTCCAAAAAAAAGGGTTG
CAGAAGGGTTGTTGGAAGTTCTTTACCGAGCCAGGAGTTGGGGCTGCGAGAACTTACACCCTTCT
GCGCAGAAGGGTTGTTGGAAGTTCTTGACCGAGCACAGGGGAAGAGAACTTCTGCGGAGAAGAGC
TTTTCCTTCCCCCAGTAACTTCTGCACACAAAGTGTGGTGTTCTTGACGGATTTCCAACACGCAC
GCTTTTGCCAAAAGAGCTTGCTTTCTGAGCGCAGCGGGGAAAAGAACTTCTGCTTTCACCCACTC
TTTCCCCCGCAGAAGAACTTCTGCTCGGAGGGGAAAACCCCTGCG
Found at i:29835 original size:14 final size:14
Alignment explanation
Indices: 29816--29843 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
29806 CCCCCGGCAC
29816 GGGACACTCGACCT
1 GGGACACTCGACCT
29830 GGGACACTCGACCT
1 GGGACACTCGACCT
29844 TTGACGGGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.14
Consensus pattern (14 bp):
GGGACACTCGACCT
Left flanking sequence: Indices 29316 -- 29815
GAAAGACTGCTACTGGCGTCTCATGAGCGAATCAAGCCTAAACCAGGCCACTCAAACCTTGATAT
TAGGGCCACTTTAAATGAGTGCGGAGAGGGAGGGGGTGGGGAGGGGTTAAACGGGGCCCCCTCCC
CCACCACCTCCCCACCCCAGGGCTCATTTTTGAAACCCTGTTTTAGTAAGAAGGGAATCTCTTTG
GAATGGTTGGAGAGAGCCTCGCAGCGCCTCCTGCCAGGCGCCTGGCCCGGGGTGATGATACCGCT
CATTCCTGAAAACAAGGCCTCAGAAATCGCATTTGGGGCTGGATATTCTCTCTCCTTATCTTCGG
GCCACTTCTACCAGGGTCCCATGAGATACACTCGACCGAAAGGTTCTGACGGGGAATACACTCGA
CCGATAGGGTCTGACCCGTGGCGGGGAAGACACGATACCAAAGGGCCTAACGGGGAAGACACTCT
TAGCACCCGGGTTCCCTACAGGGTGGGATCCAAGTCCCCCGGCAC
Right flanking sequence: Indices 29844 -- 30343
TTGACGGGCGAGGGAGAGGGTCTGACCCAGGAAGACACTCGACCAATTATAGGGTCTGACCCAGG
AAGACACTCGACCTTTGACGGGAGAGGGGATAAAGAGGCAGCACGGGGCCCTCATAGGCCGATGA
TAGCTTTATTGCCAGGCTTTGCTCCTGAGTTTGAACCGCTCGCAGTAGTAGCACCGAGAGACAAG
ATCATTCAGGGGGCGATAAAGACGGTACTCGAATCTATTCACGAGTTTCTAGACACATCGCACGG
ATTCCGCCCGGGTCGAGGCTGCCACTCGGCCCTGATACGGATCAGAGCACGGTGGGCTGGAACCT
CTTGGTTTTCAGAATCCGACCTCGTAAAGTGTTTTTACACCATCGACCGACCTCGACTTATCTCA
ATCTCGAAAGGGGAGATCGACGATCCCAATTTATTGAACCCAACTCACAAAATGGCCGGACTTGT
AGAGGGTGGGAAGGGTGGCCCTTCCTCCAGGGGGGTCCCACAAGG
Found at i:33425 original size:8 final size:8
Alignment explanation
Indices: 33423--33596 Score: 158
Period size: 8 Copynumber: 21.8 Consensus size: 8
33413 ATATAGATAT
33423 ATATATAG
1 ATATATAG
33431 ATATATAG
1 ATATATAG
33439 ATATATAG
1 ATATATAG
33447 ATATATAG
1 ATATATAG
33455 ATATATAG
1 ATATATAG
33463 ATATATAG
1 ATATATAG
*
33471 ATATATAT
1 ATATATAG
*
33479 ATAGATAG
1 ATATATAG
*
33487 ATATATAA
1 ATATATAG
*
33495 ATAGATAG
1 ATATATAG
33503 ATATATAG
1 ATATATAG
33511 --ATATAG
1 ATATATAG
*
33517 ATATCT--
1 ATATATAG
33523 ATATATAG
1 ATATATAG
*
33531 ATATATATCT
1 ATATATA--G
*
33541 ATATATAT
1 ATATATAG
* * *
33549 CTATCTAT
1 ATATATAG
33557 ATATATAG
1 ATATATAG
*
33565 ATAGATATAT
1 AT--ATATAG
*
33575 CTATATAG
1 ATATATAG
* *
33583 ATAGATAT
1 ATATATAG
33591 ATATAT
1 ATATAT
33597 CTATATATAT
Statistics
Matches: 135, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
6 11 0.08
8 111 0.82
10 13 0.10
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.40
Consensus pattern (8 bp):
ATATATAG
Left flanking sequence: Indices 32923 -- 33422
CGGCATCTGTTCGAAAGGTTGCGGTTCGACTCCGCATCCCGTCGTCTTGTTGGAAATCTAGATGT
GCCACTAGTCCTTCGCTCACCGCTCATCGGGCCACACATCAATGCATTCAGACCACCTCCGATCT
TCGAACCAAACCGCCCAGCCCGGCTAGCCCGAAGATGCATGCTGAAAGCTGTTTTCGTGCGTTAC
AGCGCGTTCTAACAGCCTCTCTACAAATTGGATGGACTACTTCATTCAATTCCCACGAACATCGC
ATGCTTGCTCGCTTGTGAGCTTTGGGAAAGCTGGAAACAACTTTCTTTGTACCCGGGTTCTTGTT
TGTGCATAGATGCTTCCTGAGAAGACCACTGATAGAGGCCCCCTTCAAAGTCGCTCTGGCCCGTC
GCTTTGAGAAGATCGATCGAAAAAAGGCGAAGGGGCTCCGCCCCTTCGGAGTGAACTTCTATGGC
CAACTTCTTCTTCTTCTTCTTGTGAAGCTTATCCTATATAGATAT
Right flanking sequence: Indices 33597 -- 34096
CTATATATATCTATATATACCTATATATATCTATATATCTATATGCCTATCTATCTATCTATCTA
TATACATATAGATATATAGATAGATATCTATATAGATATCTAGATATCTATCTATATATCTATAT
ATCTATATAGATATCTAGATAGATATATCTATATCTATAGATATAGATATATCTATATCTATAGA
TATATATCTATTATTATTCAATTAAAAAATATGGGTCTAGCATCGAAGGTTTAAACACTGACATG
CATTACCAAGAGAAAAGGCTATTATTCATTGGCCATTGCTTGCTCTTTTAAAATAAGAGGGATAA
GGAACTCTAAGAAACGAGAAGAGAGTGAATGAAGTTGTTTTTCGAAGGGTCGGAAGGACCGCGAT
AAATAAAGGGAGTCTTGTCGGTTGCTTCCGGTAGTCGCCGATTAGCATATATTGGGCTGGGCCTT
GGGATGGGTTTGCTGGCAAGAAAGCTGTAATGAAGAAATGACTGA
Found at i:33429 original size:12 final size:12
Alignment explanation
Indices: 33412--33798 Score: 169
Period size: 12 Copynumber: 32.2 Consensus size: 12
33402 AAGCTTATCC
33412 TATATAGATATA
1 TATATAGATATA
33424 TATATAGATATATAGA
1 TATATAG--ATAT--A
33440 TATATAGATATA
1 TATATAGATATA
* * *
33452 TAGATATATAGA
1 TATATAGATATA
33464 TATATAGATATA
1 TATATAGATATA
*
33476 TATATAGATAGA
1 TATATAGATATA
33488 TATATA-A-ATA
1 TATATAGATATA
* * *
33498 GATAGATATATA
1 TATATAGATATA
*
33510 GATATAGATATCTA
1 TATATAGATA--TA
33524 TATATAGATATA
1 TATATAGATATA
*
33536 TATCT--ATATA
1 TATATAGATATA
* **
33546 TATCTATCTATA
1 TATATAGATATA
*
33558 TATATAGATAGA
1 TATATAGATATA
*
33570 TATAT--CTATA
1 TATATAGATATA
*
33580 TAGATAGATATA
1 TATATAGATATA
**
33592 TATATCTATATA
1 TATATAGATATA
* *
33604 TATCTATATATA
1 TATATAGATATA
* *
33616 CCTATATATATCTA
1 --TATATAGATATA
** *
33630 TATATCTATATG
1 TATATAGATATA
** ** *
33642 CCTATCTATCTA
1 TATATAGATATA
* **
33654 TCTATCTATATA
1 TATATAGATATA
*
33666 CATATAGATATA
1 TATATAGATATA
* *
33678 TAGATAGATATC
1 TATATAGATATA
*
33690 TATATAGATATC
1 TATATAGATATA
* ** *
33702 TAGATATCTATC
1 TATATAGATATA
**
33714 TATATATCTATA
1 TATATAGATATA
* * *
33726 TATCTATATAGA
1 TATATAGATATA
* *
33738 TATCTAGATAGA
1 TATATAGATATA
*
33750 TATAT--CTATA
1 TATATAGATATA
*
33760 TCTATAGATATA
1 TATATAGATATA
* **
33772 GATATATCTATA
1 TATATAGATATA
*
33784 TCTATAGATATA
1 TATATAGATATA
33796 TAT
1 TAT
33799 CTATTATTAT
Statistics
Matches: 289, Mismatches: 70, Indels: 32
0.74 0.18 0.08
Matches are distributed among these distances:
10 30 0.10
11 2 0.01
12 220 0.76
14 29 0.10
16 8 0.03
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (12 bp):
TATATAGATATA
Left flanking sequence: Indices 32912 -- 33411
GGGGCCTCGTTCGGCATCTGTTCGAAAGGTTGCGGTTCGACTCCGCATCCCGTCGTCTTGTTGGA
AATCTAGATGTGCCACTAGTCCTTCGCTCACCGCTCATCGGGCCACACATCAATGCATTCAGACC
ACCTCCGATCTTCGAACCAAACCGCCCAGCCCGGCTAGCCCGAAGATGCATGCTGAAAGCTGTTT
TCGTGCGTTACAGCGCGTTCTAACAGCCTCTCTACAAATTGGATGGACTACTTCATTCAATTCCC
ACGAACATCGCATGCTTGCTCGCTTGTGAGCTTTGGGAAAGCTGGAAACAACTTTCTTTGTACCC
GGGTTCTTGTTTGTGCATAGATGCTTCCTGAGAAGACCACTGATAGAGGCCCCCTTCAAAGTCGC
TCTGGCCCGTCGCTTTGAGAAGATCGATCGAAAAAAGGCGAAGGGGCTCCGCCCCTTCGGAGTGA
ACTTCTATGGCCAACTTCTTCTTCTTCTTCTTGTGAAGCTTATCC
Right flanking sequence: Indices 33799 -- 34298
CTATTATTATTCAATTAAAAAATATGGGTCTAGCATCGAAGGTTTAAACACTGACATGCATTACC
AAGAGAAAAGGCTATTATTCATTGGCCATTGCTTGCTCTTTTAAAATAAGAGGGATAAGGAACTC
TAAGAAACGAGAAGAGAGTGAATGAAGTTGTTTTTCGAAGGGTCGGAAGGACCGCGATAAATAAA
GGGAGTCTTGTCGGTTGCTTCCGGTAGTCGCCGATTAGCATATATTGGGCTGGGCCTTGGGATGG
GTTTGCTGGCAAGAAAGCTGTAATGAAGAAATGACTGAAGCTGGTGATGAAAAGCATAGCATCGT
CTTCGGTCTATCGGTGAAGGGGAAGAACTCGCATTCACTTATTGCGTTATGAAGATCTGATCGTT
GGCTAGAGGAGTTCACGAGCAGGAAAGAGAGGTAGGTGAGCATCTTCACACGTGGGAATTGAGAG
AACCCGGGGGGAAGGCCGGCACGGAGGGTGGGGAGGGGGCAGGGG
Found at i:33437 original size:20 final size:20
Alignment explanation
Indices: 33412--33777 Score: 163
Period size: 20 Copynumber: 18.3 Consensus size: 20
33402 AAGCTTATCC
* *
33412 TATATAGATATATATATAGA
1 TATATAGATATATAGATATA
33432 TATATAGATATATAGATATATAGA
1 TATATAGATATATAG--ATAT--A
33456 TATATAGATATATAGATATA
1 TATATAGATATATAGATATA
* * *
33476 TATATAGATAGATATATAAA
1 TATATAGATATATAGATATA
*
33496 TAGATAGATATATAGATATA
1 TATATAGATATATAGATATA
* **
33516 GATATCTATATATAGATATA
1 TATATAGATATATAGATATA
* ** *
33536 TATCT--ATATATATCTATC
1 TATATAGATATATAGATATA
* *
33554 TATATATATAGATAGATATA
1 TATATAGATATATAGATATA
* *
33574 TCTAT--ATAGATAGATATA
1 TATATAGATATATAGATATA
* * *
33592 TATAT--CTATATATATCTA
1 TATATAGATATATAGATATA
** * *
33610 TATATACCTATATATATCTA
1 TATATAGATATATAGATATA
** * ** *
33630 TATATCTATATGCCTATCTATC
1 TATATAGATAT--ATAGATATA
* ** *
33652 TATCTATCTATATACATATA
1 TATATAGATATATAGATATA
* * *
33672 GATAT--ATAGATAGATATC
1 TATATAGATATATAGATATA
* *
33690 TATATAGATATCTAGATATC
1 TATATAGATATATAGATATA
* * * * *
33710 TATCTATATATCTATATATC
1 TATATAGATATATAGATATA
*
33730 TATATAGATATCTAGATAGATA
1 TATATAGATATATAGAT--ATA
* * *
33752 TATCTATATCTATAGATATA
1 TATATAGATATATAGATATA
*
33772 GATATA
1 TATATA
33778 TCTATATCTA
Statistics
Matches: 267, Mismatches: 65, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
18 58 0.22
20 158 0.59
22 35 0.13
24 16 0.06
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.41
Consensus pattern (20 bp):
TATATAGATATATAGATATA
Left flanking sequence: Indices 32912 -- 33411
GGGGCCTCGTTCGGCATCTGTTCGAAAGGTTGCGGTTCGACTCCGCATCCCGTCGTCTTGTTGGA
AATCTAGATGTGCCACTAGTCCTTCGCTCACCGCTCATCGGGCCACACATCAATGCATTCAGACC
ACCTCCGATCTTCGAACCAAACCGCCCAGCCCGGCTAGCCCGAAGATGCATGCTGAAAGCTGTTT
TCGTGCGTTACAGCGCGTTCTAACAGCCTCTCTACAAATTGGATGGACTACTTCATTCAATTCCC
ACGAACATCGCATGCTTGCTCGCTTGTGAGCTTTGGGAAAGCTGGAAACAACTTTCTTTGTACCC
GGGTTCTTGTTTGTGCATAGATGCTTCCTGAGAAGACCACTGATAGAGGCCCCCTTCAAAGTCGC
TCTGGCCCGTCGCTTTGAGAAGATCGATCGAAAAAAGGCGAAGGGGCTCCGCCCCTTCGGAGTGA
ACTTCTATGGCCAACTTCTTCTTCTTCTTCTTGTGAAGCTTATCC
Right flanking sequence: Indices 33778 -- 34277
TCTATATCTATAGATATATATCTATTATTATTCAATTAAAAAATATGGGTCTAGCATCGAAGGTT
TAAACACTGACATGCATTACCAAGAGAAAAGGCTATTATTCATTGGCCATTGCTTGCTCTTTTAA
AATAAGAGGGATAAGGAACTCTAAGAAACGAGAAGAGAGTGAATGAAGTTGTTTTTCGAAGGGTC
GGAAGGACCGCGATAAATAAAGGGAGTCTTGTCGGTTGCTTCCGGTAGTCGCCGATTAGCATATA
TTGGGCTGGGCCTTGGGATGGGTTTGCTGGCAAGAAAGCTGTAATGAAGAAATGACTGAAGCTGG
TGATGAAAAGCATAGCATCGTCTTCGGTCTATCGGTGAAGGGGAAGAACTCGCATTCACTTATTG
CGTTATGAAGATCTGATCGTTGGCTAGAGGAGTTCACGAGCAGGAAAGAGAGGTAGGTGAGCATC
TTCACACGTGGGAATTGAGAGAACCCGGGGGGAAGGCCGGCACGG
Found at i:33444 original size:16 final size:16
Alignment explanation
Indices: 33412--33798 Score: 206
Period size: 16 Copynumber: 24.2 Consensus size: 16
33402 AAGCTTATCC
* *
33412 TATATAGATATATATA
1 TATATATATAGATATA
*
33428 TAGATATATAGATATA
1 TATATATATAGATATA
*
33444 TAGATATATAGATATA
1 TATATATATAGATATA
*
33460 TAGATATATAGATATA
1 TATATATATAGATATA
*
33476 TATATAGATAGATATA
1 TATATATATAGATATA
* *
33492 TAAATAGATAG--ATA
1 TATATATATAGATATA
* *
33506 TATAGATATAGATATC
1 TATATATATAGATATA
* *
33522 TATATATAGATATATA
1 TATATATATAGATATA
* ** *
33538 TCTATATATATCTATC
1 TATATATATAGATATA
33554 TATATATATAGATAGATA
1 TATATATATAGAT--ATA
*
33572 TATCTATATAGATAGATA
1 TATATATATAGAT--ATA
* *
33590 TATATATCTATATATA
1 TATATATATAGATATA
* **
33606 TCTATATATACCTATA
1 TATATATATAGATATA
* * *
33622 TATATCTATATATCTA
1 TATATATATAGATATA
*** ** *
33638 TATGCCTATCTATCTA
1 TATATATATAGATATA
* * * *
33654 TCTATCTATATACATA
1 TATATATATAGATATA
* *
33670 TAGATATATAGATAGA
1 TATATATATAGATATA
* *
33686 TATCTATATAGATATC
1 TATATATATAGATATA
* * **
33702 TAGATATCTATCTATA
1 TATATATATAGATATA
* **
33718 TATCTATATATCTATA
1 TATATATATAGATATA
* * *
33734 TAGATATCTAGATAGA
1 TATATATATAGATATA
* *
33750 TATATCTAT--ATCTA
1 TATATATATAGATATA
* * * *
33764 TAGATATAGATATATC
1 TATATATATAGATATA
*
33780 TATATCTATAGATATA
1 TATATATATAGATATA
33796 TAT
1 TAT
33799 CTATTATTAT
Statistics
Matches: 281, Mismatches: 84, Indels: 12
0.75 0.22 0.03
Matches are distributed among these distances:
14 20 0.07
16 232 0.83
18 29 0.10
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (16 bp):
TATATATATAGATATA
Left flanking sequence: Indices 32912 -- 33411
GGGGCCTCGTTCGGCATCTGTTCGAAAGGTTGCGGTTCGACTCCGCATCCCGTCGTCTTGTTGGA
AATCTAGATGTGCCACTAGTCCTTCGCTCACCGCTCATCGGGCCACACATCAATGCATTCAGACC
ACCTCCGATCTTCGAACCAAACCGCCCAGCCCGGCTAGCCCGAAGATGCATGCTGAAAGCTGTTT
TCGTGCGTTACAGCGCGTTCTAACAGCCTCTCTACAAATTGGATGGACTACTTCATTCAATTCCC
ACGAACATCGCATGCTTGCTCGCTTGTGAGCTTTGGGAAAGCTGGAAACAACTTTCTTTGTACCC
GGGTTCTTGTTTGTGCATAGATGCTTCCTGAGAAGACCACTGATAGAGGCCCCCTTCAAAGTCGC
TCTGGCCCGTCGCTTTGAGAAGATCGATCGAAAAAAGGCGAAGGGGCTCCGCCCCTTCGGAGTGA
ACTTCTATGGCCAACTTCTTCTTCTTCTTCTTGTGAAGCTTATCC
Right flanking sequence: Indices 33799 -- 34298
CTATTATTATTCAATTAAAAAATATGGGTCTAGCATCGAAGGTTTAAACACTGACATGCATTACC
AAGAGAAAAGGCTATTATTCATTGGCCATTGCTTGCTCTTTTAAAATAAGAGGGATAAGGAACTC
TAAGAAACGAGAAGAGAGTGAATGAAGTTGTTTTTCGAAGGGTCGGAAGGACCGCGATAAATAAA
GGGAGTCTTGTCGGTTGCTTCCGGTAGTCGCCGATTAGCATATATTGGGCTGGGCCTTGGGATGG
GTTTGCTGGCAAGAAAGCTGTAATGAAGAAATGACTGAAGCTGGTGATGAAAAGCATAGCATCGT
CTTCGGTCTATCGGTGAAGGGGAAGAACTCGCATTCACTTATTGCGTTATGAAGATCTGATCGTT
GGCTAGAGGAGTTCACGAGCAGGAAAGAGAGGTAGGTGAGCATCTTCACACGTGGGAATTGAGAG
AACCCGGGGGGAAGGCCGGCACGGAGGGTGGGGAGGGGGCAGGGG
Found at i:33603 original size:8 final size:8
Alignment explanation
Indices: 33517--33735 Score: 108
Period size: 8 Copynumber: 27.4 Consensus size: 8
33507 ATAGATATAG
33517 ATATCTAT
1 ATATCTAT
*
33525 ATATAGATAT
1 ATAT--CTAT
33535 ATATCTAT
1 ATATCTAT
33543 ATA--TAT
1 ATATCTAT
*
33549 CTATCTAT
1 ATATCTAT
33557 ATA--TAT
1 ATATCTAT
* **
33563 AGATAGAT
1 ATATCTAT
33571 ATATCTAT
1 ATATCTAT
** *
33579 ATAGATAG
1 ATATCTAT
*
33587 ATATATAT
1 ATATCTAT
* *
33595 ATCTATAT
1 ATATCTAT
33603 ATATCTAT
1 ATATCTAT
33611 ATATACCTATAT
1 ATAT--C--TAT
33623 ATATCTAT
1 ATATCTAT
33631 ATATCTAT
1 ATATCTAT
**
33639 ATGCCTAT
1 ATATCTAT
*
33647 CTATCTAT
1 ATATCTAT
*
33655 CTATCTAT
1 ATATCTAT
33663 ATA-C-AT
1 ATATCTAT
**
33669 ATAGATAT
1 ATATCTAT
** *
33677 ATAGATAG
1 ATATCTAT
33685 ATATCTAT
1 ATATCTAT
**
33693 ATAGATAT
1 ATATCTAT
* **
33701 CTAGATAT
1 ATATCTAT
*
33709 CTATCTAT
1 ATATCTAT
33717 ATATCTAT
1 ATATCTAT
33725 ATATCTAT
1 ATATCTAT
33733 ATA
1 ATA
33736 GATATCTAGA
Statistics
Matches: 165, Mismatches: 34, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
6 15 0.09
7 1 0.01
8 133 0.81
10 9 0.05
12 7 0.04
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (8 bp):
ATATCTAT
Left flanking sequence: Indices 33017 -- 33516
GGCCACACATCAATGCATTCAGACCACCTCCGATCTTCGAACCAAACCGCCCAGCCCGGCTAGCC
CGAAGATGCATGCTGAAAGCTGTTTTCGTGCGTTACAGCGCGTTCTAACAGCCTCTCTACAAATT
GGATGGACTACTTCATTCAATTCCCACGAACATCGCATGCTTGCTCGCTTGTGAGCTTTGGGAAA
GCTGGAAACAACTTTCTTTGTACCCGGGTTCTTGTTTGTGCATAGATGCTTCCTGAGAAGACCAC
TGATAGAGGCCCCCTTCAAAGTCGCTCTGGCCCGTCGCTTTGAGAAGATCGATCGAAAAAAGGCG
AAGGGGCTCCGCCCCTTCGGAGTGAACTTCTATGGCCAACTTCTTCTTCTTCTTCTTGTGAAGCT
TATCCTATATAGATATATATATAGATATATAGATATATAGATATATAGATATATAGATATATAGA
TATATATATAGATAGATATATAAATAGATAGATATATAGATATAG
Right flanking sequence: Indices 33736 -- 34235
GATATCTAGATAGATATATCTATATCTATAGATATAGATATATCTATATCTATAGATATATATCT
ATTATTATTCAATTAAAAAATATGGGTCTAGCATCGAAGGTTTAAACACTGACATGCATTACCAA
GAGAAAAGGCTATTATTCATTGGCCATTGCTTGCTCTTTTAAAATAAGAGGGATAAGGAACTCTA
AGAAACGAGAAGAGAGTGAATGAAGTTGTTTTTCGAAGGGTCGGAAGGACCGCGATAAATAAAGG
GAGTCTTGTCGGTTGCTTCCGGTAGTCGCCGATTAGCATATATTGGGCTGGGCCTTGGGATGGGT
TTGCTGGCAAGAAAGCTGTAATGAAGAAATGACTGAAGCTGGTGATGAAAAGCATAGCATCGTCT
TCGGTCTATCGGTGAAGGGGAAGAACTCGCATTCACTTATTGCGTTATGAAGATCTGATCGTTGG
CTAGAGGAGTTCACGAGCAGGAAAGAGAGGTAGGTGAGCATCTTC
Found at i:42643 original size:17 final size:17
Alignment explanation
Indices: 42618--42650 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
42608 CCGGGGAACC
42618 AGACATAGTCATGGACA
1 AGACATAGTCATGGACA
*
42635 AGACCTAGTCATGGAC
1 AGACATAGTCATGGAC
42651 GGACAGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.18
Consensus pattern (17 bp):
AGACATAGTCATGGACA
Left flanking sequence: Indices 42118 -- 42617
GTGACTCTGGTTAAACGGGAGGCCGGGGGGCCCCCCTGCGCTCGGAGAACACCCTTCTGCACATA
CCTGGGTTTACGGGGGTCCCGTGCCCACCCCTACAGCCAACCTTCTGCCCACCTATTAATAGACT
ACACCACCAACACACAGACCAACATCACCTTCAACACCAACACCTGTTCGGATCAACAAACACAC
GAATCACTCACGATTCGACCCACTCACCAACAACTAAGCCCACCCAGCACAGTTGGCGATACGCG
AAAGGAACGAGCAAACCTCGTACAACTTGCCCGGACACACACCCAAGACCACACCACCCAGACAC
CCACCGGCAGGACTCACGACACCCAGGACAGGGTGACAGGGTATAACAGGCAGGAACAAAGACAC
ACCTGTCACACCCGAGGCCCACATTATGGATGGATGGATGGAAGTATTGGGCATACCACTGAAAC
TCCCCTCCCCGGATTACCCAATACAGAATGGAAACCCGGGGAACC
Right flanking sequence: Indices 42651 -- 43150
GGACAGGGATGGAGGAATATGTAAGTGGGATACCACCTCTTCCCCCAGGGGCATACACTGGTTGC
CGGGGGGGGATACCGATACGTTAGGGAGGATTGGGGAGATGGGGGGGCCCGCCCAAAGAGTAAGG
AAGGAAGGTGTCATTTGGGGGGGCAGTGGGAAAGGAGGGGAGAACAATCACACCTATCCACGGGG
CATTACGAGGTATCCCCCCAGAGATAGATCACACCGCTTCTTCAACGGGCAGTTACCTCAGGAGA
GGAAGGGATGGGAAAGGCACCTTGTCAGACTGGCTTCATGGACCCTCTTCATCTCGACCCGGGGG
AGGGGAGAAGCTGGGGGGGACATAACTGTTATCGTACTCAGCCAGGAACCAGTCACGCTCGGGAT
ACACTGCTCACTGATTATTCTCATATGGAGGTGGAGAGACTATTGGGTACACCGAAAGGGATTAC
CCAGTCACCGGGGCAGCAGGCTCGATAAGAGGAACTCGGAACCAA
Found at i:52501 original size:19 final size:17
Alignment explanation
Indices: 52478--52511 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
52468 CGATCCAGCC
52478 TCTCTCTATTTCCAGGG
1 TCTCTCTATTTCCAGGG
52495 TCTCTCTATTTCCAGGG
1 TCTCTCTATTTCCAGGG
52512 AAGTACTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.29, G:0.18, T:0.41
Consensus pattern (17 bp):
TCTCTCTATTTCCAGGG
Left flanking sequence: Indices 51978 -- 52477
TGGGACGCTGTTTTCTTGGGCTATTGCCTTGTCTCACCCGCAACCAACTTTAATAGCTATCCAAC
TATTAAAGTTGGTTGCGGTATAGCGGCCAGGGAGAGTGGATGGCCTGCCAGGGTCCGGTCCCTGC
CATCCACTCGAACTTTTGCATGCATGCAAACAAAAGGTGTGAACAAAAGAATCTGAGCGCAGGGG
AAGGAGTGAAGGTTCACACCAACTTTACGTGCCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCTA
CCGTTCTTCTTGGGACCAAGAAAGTGCGCAGCGGGAAAAGGTTGCTTCGCACAGGGGTTCTCCGG
GGAAGGGTAACTTCTGCACACTTTAAAGAAAGCAAGCAAGCAAGCAAGTTGGGACCAAGAAAGTT
GAATCTTCGCGCAGGGGAAGAAGTGAAGGTCGTATTATTTTAGAAAACCAGGCCATTGTGTGAGA
GTCGTACAACACCTAGTTATCCCGGTGTGCTTTTCCGATCCAGCC
Right flanking sequence: Indices 52512 -- 53011
AAGTACTTGAGTTTGATTTTATCGCGACCCGTATAATAAAGGGCCGTCGGTACACCCATGCTTGG
AGCTTCCGGAAAATGCCATGGTCTAGTCTCTGAAATACGCTGCCGCATTCAGAGTAGTCTGGGAA
ATTAAGTAGTTGCCCCATCCCACTATTCAGCTGGGGACCCTGGTGGCGATAAGTGGGTGGGCCGC
TTTCACTCTTTCGTTGAGACGGCCGGCCGTATCTTCAATAAATCTCCTAGAGACGATGGGGTGAT
TGCATTATTAACAAAAGCAGCCTGATTGATTGACCGAATTGTCACCGGTTCGACTATCTGGGTAT
TCTCCGGGTGCAATTTAAGCCCGCCCCATGGGCTGGCTGCTTTAACCATTCCCTCAGGCCCCTTA
TTTGTTAAGTACAACGAAGTGGTCGGCATATCGTATCGGAGTTGGTTCTCCGGGGTGTGCTTTCT
CCAGTGACCACTCCCTTGAAAGAGCTGTCTCCATCCCACTTGCCC
Found at i:60732 original size:5 final size:5
Alignment explanation
Indices: 60722--60761 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
60712 TTAAAGGGCT
*
60722 CCTCC CCTCC CCTCC CATCC CCTCC CCTCC CCTCC CCTCC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC
60762 GAGGTTCAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.03, C:0.78, G:0.00, T:0.20
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 60222 -- 60721
ACCGTTCTTGTTGGGCCAGAAGTTTGGTTGGCTGGTTCTCCGCGCAGCTACGTGAAGGCACGGCA
ACGTTTACGGAGAACCTTCTGGCACTCATTCGAAATGACAAAGGACTTAAAAGAAAGTTGCTATC
CGTGCAAGCCTACCTTTGTAACTTTTTGGGCCGGGGGTTGGTTGTTTCGGATAAAAGGCCCTCAT
TCTACGAATGAGTGCAAAAAGCTCGGAGGTATGTGCCGAGCGCAGCGAGAACTTCTGCGGAGAGT
GGGTCCTTGGATCCCGACAACTGTTTAAGGCCAGTTTGTGGCACGAATAGCTGCCCTATGAGTGC
CACGTAGTGGCACGGAGTTATGGCACTCATATCGTGCCACTATAAAAGTGGCAAGCACCCTTGTG
CCGGCAAATACAGTTGTCGGGATCCAAGTTGTCCCACTCTCCCTCCTTCCCTCATTGGGATCCAA
GGACCCTGTGCACGGGGGGGGGTCGGTTAAGCTTTTTAAAGGGCT
Right flanking sequence: Indices 60762 -- 61261
GAGGTTCAGGGAAGTGCCTTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCGAGGTTCAGGGTTG
CAGAAGGTTGGTAAGTTCTTGACCGAGCGCAGGGGTTCTCCCCACAAACAACCTTCAGAGGAATA
TAAGAGGGAACTTCTTGGATCTTTCTTGCTTCTCCCCTCCCCGCTGCGCTCAGAACTACTTTCTT
TCTTTTTGGCTGGCTTGTGGTAAATCTGTCCTTCGCTTTTCCCCGCTGCGCGAAGCAGAAGTTCG
CACTTTCTTGGTTCCAACTTTCTTTTTTTAATTAAAGTGTGCAGAAGAAAAGAAGCAGAAGTTCT
GCGCAGAAGTTTCAAACAACCCGCACTCTTTTTTTGTTCACACCTTTCTAAACCCCGTGCCAGCC
TACCTTTGTAATTTCGAATGAGTGCCAGAAGGTTCTTTCCCCCGTGCCAGCCTACCTTTGTAACT
TCGTGGCCGAATAACCGGTTGGTTGTTTCGAAGACTGTGGCTAAA
Found at i:61299 original size:5 final size:5
Alignment explanation
Indices: 61289--61360 Score: 90
Period size: 5 Copynumber: 14.4 Consensus size: 5
61279 ACCAACCGCC
* * * * *
61289 ACTTT ACTTT ACTTT ACTTT ACTCT ACTCT ACTTT ACTCT ATTTT ACTCT
1 ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT
*
61339 ACTCT ACTTT ACTTT ACTTT AC
1 ACTTT ACTTT ACTTT ACTTT AC
61361 AAAGGTGTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 59 1.00
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (5 bp):
ACTTT
Left flanking sequence: Indices 60789 -- 61288
CGCAGGGGTTCTCCCCTCCCCTCCGAGGTTCAGGGTTGCAGAAGGTTGGTAAGTTCTTGACCGAG
CGCAGGGGTTCTCCCCACAAACAACCTTCAGAGGAATATAAGAGGGAACTTCTTGGATCTTTCTT
GCTTCTCCCCTCCCCGCTGCGCTCAGAACTACTTTCTTTCTTTTTGGCTGGCTTGTGGTAAATCT
GTCCTTCGCTTTTCCCCGCTGCGCGAAGCAGAAGTTCGCACTTTCTTGGTTCCAACTTTCTTTTT
TTAATTAAAGTGTGCAGAAGAAAAGAAGCAGAAGTTCTGCGCAGAAGTTTCAAACAACCCGCACT
CTTTTTTTGTTCACACCTTTCTAAACCCCGTGCCAGCCTACCTTTGTAATTTCGAATGAGTGCCA
GAAGGTTCTTTCCCCCGTGCCAGCCTACCTTTGTAACTTCGTGGCCGAATAACCGGTTGGTTGTT
TCGAAGACTGTGGCTAAAAGTTTGTTTCCGAAACAACCAACCGCC
Right flanking sequence: Indices 61361 -- 61860
AAAGGTGTGAACAAAAAAAGAGTTCTGAGCGCAGCGGAGCGTGCGTGCGTTTGAAGGTTCCAACT
AACTTGTGTGAACCGCAAGCAAAAAAGAGTGCAACTTCTGCGGGGTTTGGTTGGGTTAAAAGTTG
GGTTGGGTTGGGTTGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGCGGGAAGGCAACAACTT
AAGTTGTTGAGTTCTTTTTGGGCAGAAGTTTGGTTGGCCAAGTTGCCGTGCCTTTGTCATTTCGA
AACAACCAACCGCAAGCCCAAAAAGTTACAAAGGACCAAGAAGGTGTGACCTGGTTCTTCGCGTA
GCGAAGAACTTATGCTTCCAAACAACCAACCTTCTGCCGATTTCCAGAAGGTTGGCAAAAGGTTG
AACCGGCTGGTTCTCCGCGCAGGGGTTCTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCCGGG
GAACCCGGCACTCCCGTACTTCAGAGGGATATAAGAGGGAGACCC
Found at i:61309 original size:15 final size:15
Alignment explanation
Indices: 61289--61356 Score: 100
Period size: 15 Copynumber: 4.5 Consensus size: 15
61279 ACCAACCGCC
*
61289 ACTTTACTTTACTTT
1 ACTTTACTCTACTTT
*
61304 ACTTTACTCTACTCT
1 ACTTTACTCTACTTT
*
61319 ACTTTACTCTATTTT
1 ACTTTACTCTACTTT
*
61334 ACTCTACTCTACTTT
1 ACTTTACTCTACTTT
61349 ACTTTACT
1 ACTTTACT
61357 TTACAAAGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (15 bp):
ACTTTACTCTACTTT
Left flanking sequence: Indices 60789 -- 61288
CGCAGGGGTTCTCCCCTCCCCTCCGAGGTTCAGGGTTGCAGAAGGTTGGTAAGTTCTTGACCGAG
CGCAGGGGTTCTCCCCACAAACAACCTTCAGAGGAATATAAGAGGGAACTTCTTGGATCTTTCTT
GCTTCTCCCCTCCCCGCTGCGCTCAGAACTACTTTCTTTCTTTTTGGCTGGCTTGTGGTAAATCT
GTCCTTCGCTTTTCCCCGCTGCGCGAAGCAGAAGTTCGCACTTTCTTGGTTCCAACTTTCTTTTT
TTAATTAAAGTGTGCAGAAGAAAAGAAGCAGAAGTTCTGCGCAGAAGTTTCAAACAACCCGCACT
CTTTTTTTGTTCACACCTTTCTAAACCCCGTGCCAGCCTACCTTTGTAATTTCGAATGAGTGCCA
GAAGGTTCTTTCCCCCGTGCCAGCCTACCTTTGTAACTTCGTGGCCGAATAACCGGTTGGTTGTT
TCGAAGACTGTGGCTAAAAGTTTGTTTCCGAAACAACCAACCGCC
Right flanking sequence: Indices 61357 -- 61856
TTACAAAGGTGTGAACAAAAAAAGAGTTCTGAGCGCAGCGGAGCGTGCGTGCGTTTGAAGGTTCC
AACTAACTTGTGTGAACCGCAAGCAAAAAAGAGTGCAACTTCTGCGGGGTTTGGTTGGGTTAAAA
GTTGGGTTGGGTTGGGTTGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGCGGGAAGGCAACA
ACTTAAGTTGTTGAGTTCTTTTTGGGCAGAAGTTTGGTTGGCCAAGTTGCCGTGCCTTTGTCATT
TCGAAACAACCAACCGCAAGCCCAAAAAGTTACAAAGGACCAAGAAGGTGTGACCTGGTTCTTCG
CGTAGCGAAGAACTTATGCTTCCAAACAACCAACCTTCTGCCGATTTCCAGAAGGTTGGCAAAAG
GTTGAACCGGCTGGTTCTCCGCGCAGGGGTTCTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCC
CGGGGAACCCGGCACTCCCGTACTTCAGAGGGATATAAGAGGGAG
Found at i:61790 original size:5 final size:5
Alignment explanation
Indices: 61780--61811 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
61770 CAGGGGTTCT
61780 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
61812 CGGGGAACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 61280 -- 61779
CCAACCGCCACTTTACTTTACTTTACTTTACTCTACTCTACTTTACTCTATTTTACTCTACTCTA
CTTTACTTTACTTTACAAAGGTGTGAACAAAAAAAGAGTTCTGAGCGCAGCGGAGCGTGCGTGCG
TTTGAAGGTTCCAACTAACTTGTGTGAACCGCAAGCAAAAAAGAGTGCAACTTCTGCGGGGTTTG
GTTGGGTTAAAAGTTGGGTTGGGTTGGGTTGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGC
GGGAAGGCAACAACTTAAGTTGTTGAGTTCTTTTTGGGCAGAAGTTTGGTTGGCCAAGTTGCCGT
GCCTTTGTCATTTCGAAACAACCAACCGCAAGCCCAAAAAGTTACAAAGGACCAAGAAGGTGTGA
CCTGGTTCTTCGCGTAGCGAAGAACTTATGCTTCCAAACAACCAACCTTCTGCCGATTTCCAGAA
GGTTGGCAAAAGGTTGAACCGGCTGGTTCTCCGCGCAGGGGTTCT
Right flanking sequence: Indices 61812 -- 62311
CGGGGAACCCGGCACTCCCGTACTTCAGAGGGATATAAGAGGGAGACCCACTCGGGAAGGGAAGG
GAAGACCTCTTGTTTTCTTTTCTTTTAAAGGGGTCCCTCTCCCTTGAAAAAGCGTCGAGTGTACC
TACCTTATGGCAGGCCGACCGGTGCGTTGAGTGTCCCGGCCGGGTGCGTCGAGTGTATCCCCCCG
TGCCGGGACTTACGTAGTAAAACCTTCCTTCCTTCCTTGGGATCCCAAAACCTCATCCCCTCATT
GGCTGTAGGCCCGGTCAATGCGGCCCCCCTTGCCGTTCGAATTGCTTAATCTAGACGTACCAGGC
CTGCCGGTTGAGAAGCGCTAACGCGCTTCCCTCCCTCCCTCTATCCCCCCAGGGGAGGGGGTGCT
TGGGGGAAGGGGTGGGGCCCCTCCCCCACGGGGCCGGGGGTTTGGCAATTTAACCGGTTGGCAAC
CAACTTTCAAACTCCCCCCGTGCCCCCCGTTGCCCGAAGATAAGG
Found at i:65647 original size:4 final size:4
Alignment explanation
Indices: 65630--65687 Score: 93
Period size: 4 Copynumber: 15.0 Consensus size: 4
65620 CACGCTTTAT
*
65630 AAGA AAGG AAGA AAG- AA-A AAGA AAGA AAGA AAGA AAGA AAGA AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA
65676 AAGA AAGA AAGA
1 AAGA AAGA AAGA
65688 GTTAGTTTTC
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
3 4 0.08
4 46 0.92
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAGA
Left flanking sequence: Indices 65130 -- 65629
CACGGCCGGGCGGGTATCGGCAGAGTCCAGTATGCCCCTTTCCCGACATGCTCTGGGGCTCCGGG
GGAGTTGTCCCATAGAGTGAGTCGAGTCCGTCTCGCCACAGAGCAACAGCAGCGTCCGGATAATA
ATCTATCCGGCAATTCATTCGGTGACTTCAAAAACCAGGTCGCCAAAGAAGCCCCGAGAAGCATC
AAACATCTCCGAGAAAATCCATGGGGCAATCTTTATATAGCAAGCACTGGCTCCCAGTGCGACTT
CGTAAAAAGCAATCAAGGAGAGTATAAATGATAATGAAACGCACGTGGTGGTTACTATAGCGGTT
CCTTTTGACCCCAGAAAACGACCAGGAACACCTGCTACGAAGCTACCAAGCAAAGGCAACGAGAC
GATTAGTGAATACGTAACCAATGAATCCTTCTTCTCTCGCTTTCGATATGCATGGGCATTTTTTG
TTCTTTTTTGGTGAGAACGCACGCACGCACGCACGCACGCTTTAT
Right flanking sequence: Indices 65688 -- 66187
GTTAGTTTTCAATACAATGTGGGGCTAAGAGCAGCTATGAGTGCCAATGAAACTTACCGGTTTTG
CCTTAAATCCGTGCCGTGCAAAGTTCGGTAGCTGCGCTCAGAAAGCAAGCAAGCTCTTTTGGCAC
GCACTTAAAGCGTGCGTGCGTGTTGAAATCCGTCCTTTGTAAGCGAATCCGTGCCTACCTTTGTA
ATGCTTCGCTGCGCGAAGCAGAAGTTGCTTTCAACACGCTTGCGAAGTAAGTTTCTTGGTCCAAA
AAAAAGCAAGCAGAAGTTCACACTTTTTGCTGCAAAAAGTTAAGTTGTGTTGTTCCCGCCCTGCT
TGCTTTTCCCGCTGCGCATCTTTTTGGAGGTCCAAAAAAAAGGGTTGCAGAAGGTTGGAAGTTAT
TGACCGAGCACCGCGAGAACACCCAACCCTTCTGCCAACGCAGAAGGGTTGTTGGAAGTTATTGA
CCGAGCACCGCGAGAACAACCTTCTGCCAACGCAGAAGGGTTGTT
Found at i:66193 original size:57 final size:57
Alignment explanation
Indices: 66066--66222 Score: 260
Period size: 57 Copynumber: 2.7 Consensus size: 57
66056 GTTGCAGAAG
66066 GTTGGAAGTTATTGACCGAGCACCGCGAGAACACCCAACCCTTCTGCCAACGCAGAAGGGTT
1 GTTGGAAGTTATTGACCGAGCACCGCGAG-A-A--CAA-CCTTCTGCCAACGCAGAAGGGTT
66128 GTTGGAAGTTATTGACCGAGCACCGCGAGAACAACCTTCTGCCAACGCAGAAGGGTT
1 GTTGGAAGTTATTGACCGAGCACCGCGAGAACAACCTTCTGCCAACGCAGAAGGGTT
*
66185 GTTGGAAGTTCTTGACCGAGCACCGCGAGAACAACCTT
1 GTTGGAAGTTATTGACCGAGCACCGCGAGAACAACCTT
66223 TTCCCCTGCG
Statistics
Matches: 94, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
57 60 0.64
58 3 0.03
60 1 0.01
61 1 0.01
62 29 0.31
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (57 bp):
GTTGGAAGTTATTGACCGAGCACCGCGAGAACAACCTTCTGCCAACGCAGAAGGGTT
Left flanking sequence: Indices 65566 -- 66065
TATGCATGGGCATTTTTTGTTCTTTTTTGGTGAGAACGCACGCACGCACGCACGCACGCTTTATA
AGAAAGGAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGTTAGTTT
TCAATACAATGTGGGGCTAAGAGCAGCTATGAGTGCCAATGAAACTTACCGGTTTTGCCTTAAAT
CCGTGCCGTGCAAAGTTCGGTAGCTGCGCTCAGAAAGCAAGCAAGCTCTTTTGGCACGCACTTAA
AGCGTGCGTGCGTGTTGAAATCCGTCCTTTGTAAGCGAATCCGTGCCTACCTTTGTAATGCTTCG
CTGCGCGAAGCAGAAGTTGCTTTCAACACGCTTGCGAAGTAAGTTTCTTGGTCCAAAAAAAAGCA
AGCAGAAGTTCACACTTTTTGCTGCAAAAAGTTAAGTTGTGTTGTTCCCGCCCTGCTTGCTTTTC
CCGCTGCGCATCTTTTTGGAGGTCCAAAAAAAAGGGTTGCAGAAG
Right flanking sequence: Indices 66223 -- 66722
TTCCCCTGCGGTGCGGAGAAGAGCTTGCTTTTTGGACCAAGAAAGGTTGTTGAAACTTCTGCTCC
GCTGCGCATCTTTTTGGAGGTATTCCCGGTTGTTCCTTCTGCCAAGAAGGTGTGAACTTCTGCTT
CGCGCAGCGAAGAACCTCTGCTTCCCAAACAACCTTCTGCCGATTTCCAGAAGGTTGTTTGGTTG
GCTGGTTCTTCGCGCAGCGGAGAACACCCTTCTGCGGTGTGAAGAGCTTGCTTGCTTTTCCCGCT
GCGAAAAACAACCCGCACTCTTTTGGTCCAAAAAAAAGGTCTTACCTTTACCGAGCGCAGGGGTT
CTCCCCTCCCCTCCCCTCCGAGGTTCAGGGAAGTGCCTTTACCGAGCGCAGGGGTTCTCCCCTCC
CCTCCGAGGTTCAGGGTTGCAGAAGGTTGGTAAGTTCTTGACCGAGCGCAGGGGTTCTCCCCACA
AACAACCTTCAGAGGAATATAAGAGGGAACTTCTTGGATCTTTCT
Found at i:67104 original size:5 final size:5
Alignment explanation
Indices: 67094--67165 Score: 90
Period size: 5 Copynumber: 14.4 Consensus size: 5
67084 ACCAACCGCC
* * * * *
67094 ACTTT ACTTT ACTTT ACTTT ACTCT ACTCT ACTTT ACTCT ATTTT ACTCT
1 ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT
*
67144 ACTCT ACTTT ACTTT ACTTT AC
1 ACTTT ACTTT ACTTT ACTTT AC
67166 AAAGGTGTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 59 1.00
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (5 bp):
ACTTT
Left flanking sequence: Indices 66594 -- 67093
CGCAGGGGTTCTCCCCTCCCCTCCGAGGTTCAGGGTTGCAGAAGGTTGGTAAGTTCTTGACCGAG
CGCAGGGGTTCTCCCCACAAACAACCTTCAGAGGAATATAAGAGGGAACTTCTTGGATCTTTCTT
GCTTCTCCCCTCCCCGCTGCGCTCAGAACTACTTTCTTTCTTTTTGGCTGGCTTGTGGTAAATCT
GTCCTTCGCTTTTCCCCGCTGCGCGAAGCAGAAGTTCGCACTTTCTTGGTTCCAACTTTCTTTTT
TTAATTAAAGTGTGCAGAAGAAAAGAAGCAGAAGTTCTGCGCAGAAGTTTCAAACAACCCGCACT
CTTTTTTTGTTCACACCTTTCTAAACCCCGTGCCAGCCTACCTTTGTAATTTCGAATGAGTGCCA
GAAGGTTCTTTCCCCCGTGCCAGCCTACCTTTGTAACTTCGTGGCCGAATAACCGGTTGGTTGTT
TCGAAGACTGTGGCTAAAAGTTTGTTTCCGAAACAACCAACCGCC
Right flanking sequence: Indices 67166 -- 67665
AAAGGTGTGAACAAAAAAAGAGTTCTGAGCGCAGCGGAGCGTGCGTGCGTTTGAAGGTTCCAACT
AACTTGTGTGAACCGCAAGCAAAAAAGAGTGCAACTTCTGCGGGGTTTGGTTGGGTTAAAAGTTG
GGTTGGGTTGGGTTGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGCGGGAAGGCAACAACTT
AAGTTGTTGAGTTCTTTTTGGGCAGAAGTTTGGTTGGCCAAGTTGCCGTGCCTTTGTCATTTCGA
AACAACCAACCGCAAGCCCAAAAAGTTACAAAGGACCAAGAAGGTGTGACCTGGTTCTTCGCGTA
GCGAAGAACTTATGCTTCCAAACAACCAACCTTCTGCCGATTTCCAGAAGGTTGGCAAAAGGTTG
AACCGGCTGGTTCTCCGCGCAGGGGTTCTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCGGGG
AAGAGTTCTTGTTGGCGTGTTGAATCTTCGCGCAGCTTTCCCTTC
Found at i:67114 original size:15 final size:15
Alignment explanation
Indices: 67094--67161 Score: 100
Period size: 15 Copynumber: 4.5 Consensus size: 15
67084 ACCAACCGCC
*
67094 ACTTTACTTTACTTT
1 ACTTTACTCTACTTT
*
67109 ACTTTACTCTACTCT
1 ACTTTACTCTACTTT
*
67124 ACTTTACTCTATTTT
1 ACTTTACTCTACTTT
*
67139 ACTCTACTCTACTTT
1 ACTTTACTCTACTTT
67154 ACTTTACT
1 ACTTTACT
67162 TTACAAAGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (15 bp):
ACTTTACTCTACTTT
Left flanking sequence: Indices 66594 -- 67093
CGCAGGGGTTCTCCCCTCCCCTCCGAGGTTCAGGGTTGCAGAAGGTTGGTAAGTTCTTGACCGAG
CGCAGGGGTTCTCCCCACAAACAACCTTCAGAGGAATATAAGAGGGAACTTCTTGGATCTTTCTT
GCTTCTCCCCTCCCCGCTGCGCTCAGAACTACTTTCTTTCTTTTTGGCTGGCTTGTGGTAAATCT
GTCCTTCGCTTTTCCCCGCTGCGCGAAGCAGAAGTTCGCACTTTCTTGGTTCCAACTTTCTTTTT
TTAATTAAAGTGTGCAGAAGAAAAGAAGCAGAAGTTCTGCGCAGAAGTTTCAAACAACCCGCACT
CTTTTTTTGTTCACACCTTTCTAAACCCCGTGCCAGCCTACCTTTGTAATTTCGAATGAGTGCCA
GAAGGTTCTTTCCCCCGTGCCAGCCTACCTTTGTAACTTCGTGGCCGAATAACCGGTTGGTTGTT
TCGAAGACTGTGGCTAAAAGTTTGTTTCCGAAACAACCAACCGCC
Right flanking sequence: Indices 67162 -- 67661
TTACAAAGGTGTGAACAAAAAAAGAGTTCTGAGCGCAGCGGAGCGTGCGTGCGTTTGAAGGTTCC
AACTAACTTGTGTGAACCGCAAGCAAAAAAGAGTGCAACTTCTGCGGGGTTTGGTTGGGTTAAAA
GTTGGGTTGGGTTGGGTTGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGCGGGAAGGCAACA
ACTTAAGTTGTTGAGTTCTTTTTGGGCAGAAGTTTGGTTGGCCAAGTTGCCGTGCCTTTGTCATT
TCGAAACAACCAACCGCAAGCCCAAAAAGTTACAAAGGACCAAGAAGGTGTGACCTGGTTCTTCG
CGTAGCGAAGAACTTATGCTTCCAAACAACCAACCTTCTGCCGATTTCCAGAAGGTTGGCAAAAG
GTTGAACCGGCTGGTTCTCCGCGCAGGGGTTCTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCC
GGGGAAGAGTTCTTGTTGGCGTGTTGAATCTTCGCGCAGCTTTCC
Found at i:67595 original size:5 final size:5
Alignment explanation
Indices: 67585--67616 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
67575 CAGGGGTTCT
67585 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
67617 GGGGAAGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 67085 -- 67584
CCAACCGCCACTTTACTTTACTTTACTTTACTCTACTCTACTTTACTCTATTTTACTCTACTCTA
CTTTACTTTACTTTACAAAGGTGTGAACAAAAAAAGAGTTCTGAGCGCAGCGGAGCGTGCGTGCG
TTTGAAGGTTCCAACTAACTTGTGTGAACCGCAAGCAAAAAAGAGTGCAACTTCTGCGGGGTTTG
GTTGGGTTAAAAGTTGGGTTGGGTTGGGTTGGTTGTTTGAACTTCTGCGCAGCTTTCCCCCGTGC
GGGAAGGCAACAACTTAAGTTGTTGAGTTCTTTTTGGGCAGAAGTTTGGTTGGCCAAGTTGCCGT
GCCTTTGTCATTTCGAAACAACCAACCGCAAGCCCAAAAAGTTACAAAGGACCAAGAAGGTGTGA
CCTGGTTCTTCGCGTAGCGAAGAACTTATGCTTCCAAACAACCAACCTTCTGCCGATTTCCAGAA
GGTTGGCAAAAGGTTGAACCGGCTGGTTCTCCGCGCAGGGGTTCT
Right flanking sequence: Indices 67617 -- 68116
GGGGAAGAGTTCTTGTTGGCGTGTTGAATCTTCGCGCAGCTTTCCCTTCCCCCGTGCCAAAAGTT
CTTGTTGGACGCTTGCTTGCGCGGGTTAAAAGTTGGGTTGGGAACTTCTGCTTCGCGCAGGCAGC
GAAGAACTTATGCGGATTTCAACTTGCAACTTCTTAAGAGTTATGAGCGCAGCGAAGCAGAAGTT
CACGGCACGGGGGAAAGAACCTTCTGCAAGCAAGCAACTTCTGCCTGCCTGCGGGGAGGACCTTC
TGCACACCTTGGAACCAAAAAGCTCTGCTCTGCTCTGCAACCAACTTGAAACAACCAACAACCTT
CTGCCGTGCCGAATAGTTTCGAAGTTACAAAGGTAGGCACGGATCAAAGGCACACCTGAAAGTAA
GTTAAGTTGGAACCCGCACGCAAGCAACTTTTGCCCAGCCGTTCACATGCTTGGAGAAACCAACA
CGCAACCCAAGAAGTTTGTGTGAACTTCTGCTCTCTCTTATATCC
Found at i:71289 original size:12 final size:12
Alignment explanation
Indices: 71274--71339 Score: 60
Period size: 12 Copynumber: 5.3 Consensus size: 12
71264 CTATATCGAT
*
71274 ATATATAAATAG
1 ATATAGAAATAG
*
71286 ATATAGATATAG
1 ATATAGAAATAG
*
71298 ATATATAGATATAG
1 --ATATAGAAATAG
*
71312 ATATAGATATAG
1 ATATAGAAATAG
**
71324 ATATAGGTATAG
1 ATATAGAAATAG
71336 ATAT
1 ATAT
71340 CTATACCAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
12 37 0.76
14 12 0.24
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (12 bp):
ATATAGAAATAG
Left flanking sequence: Indices 70774 -- 71273
TTATTGAAAAGGGGCACGCGCATTTAGCCTGCTTAGCCCTCGACCTTTATCTATATACGCGATTT
TATCAAACATATCGGCTCAAGAGTTAGTTTTCAGTCGGCTAATCTCAGCCAATAGGCAGGGGGTC
ATGCTCATTCCCCTGATCGCGTGGCTTGCCTTGAACTGAATGCATTGAACGCCTTGTGAGCGGCT
ACAGAAACCGTCGGGATCCAAGACCGACCTAAAAGTCAGTCGTTTTGCCCTCCTATTCCCCCTCC
AATCGCACGACGCAGGATATCTGTTCGTTTTGCAGCCCCAGCTAAACTATGGGTGAAAGCGTTTC
ACTACGGCCATAAACATCACCAGCGAATAATACACTAAACCTTTTATCAAGCCTGGCTGTGGAAG
TTTGACTAGTATTATTTCCTTCATTATCGCTGCAGAAAGCGCGAACCGATCCAGGAAAAGTAGTA
TTTGACAGCACGCCAATATTCAGTAAAACACGTATCTATATCGAT
Right flanking sequence: Indices 71340 -- 71839
CTATACCAATACCTATAGATATCTATATATCTATCTATATAGATATATAGATACCTATACATATA
TACCTACAGGGACACATATATATATAGGTACGTATATAGGTATATAAATAGGTATATATCTATCT
ATATCTATATATAGGTATATAGATATAGATAGATATGTGCCTATATACCTATCTATATATAGGTA
CACACACACGTATATAGATAGATATATAAATATATACCTATGTCTTTATATATCTATATACCTAT
ATATAGGTATAGATATATATATAGCTATCTATATATCTATATATCTATATATATATCTATATATC
TATATAGATATAGATATATATATGTGTGTGTGTATGTATATAGGTATATATGTATGTATATAAAT
ATAATATATTTATATAAATATAATATATTATATTTATATCTATAGATTTTATATATCTATGTCTA
TATATAAATATTTATATATCTAAATAGATATAGATATATAAATAT
Found at i:71291 original size:6 final size:6
Alignment explanation
Indices: 71282--71339 Score: 89
Period size: 6 Copynumber: 9.3 Consensus size: 6
71272 ATATATATAA
*
71282 ATAGAT ATAGAT ATAGATAT ATAGAT ATAGAT ATAGAT ATAGAT ATAGGT
1 ATAGAT ATAGAT ATAG--AT ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT
71332 ATAGAT AT
1 ATAGAT AT
71340 CTATACCAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
6 42 0.88
8 6 0.12
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (6 bp):
ATAGAT
Left flanking sequence: Indices 70782 -- 71281
AAGGGGCACGCGCATTTAGCCTGCTTAGCCCTCGACCTTTATCTATATACGCGATTTTATCAAAC
ATATCGGCTCAAGAGTTAGTTTTCAGTCGGCTAATCTCAGCCAATAGGCAGGGGGTCATGCTCAT
TCCCCTGATCGCGTGGCTTGCCTTGAACTGAATGCATTGAACGCCTTGTGAGCGGCTACAGAAAC
CGTCGGGATCCAAGACCGACCTAAAAGTCAGTCGTTTTGCCCTCCTATTCCCCCTCCAATCGCAC
GACGCAGGATATCTGTTCGTTTTGCAGCCCCAGCTAAACTATGGGTGAAAGCGTTTCACTACGGC
CATAAACATCACCAGCGAATAATACACTAAACCTTTTATCAAGCCTGGCTGTGGAAGTTTGACTA
GTATTATTTCCTTCATTATCGCTGCAGAAAGCGCGAACCGATCCAGGAAAAGTAGTATTTGACAG
CACGCCAATATTCAGTAAAACACGTATCTATATCGATATATATAA
Right flanking sequence: Indices 71340 -- 71839
CTATACCAATACCTATAGATATCTATATATCTATCTATATAGATATATAGATACCTATACATATA
TACCTACAGGGACACATATATATATAGGTACGTATATAGGTATATAAATAGGTATATATCTATCT
ATATCTATATATAGGTATATAGATATAGATAGATATGTGCCTATATACCTATCTATATATAGGTA
CACACACACGTATATAGATAGATATATAAATATATACCTATGTCTTTATATATCTATATACCTAT
ATATAGGTATAGATATATATATAGCTATCTATATATCTATATATCTATATATATATCTATATATC
TATATAGATATAGATATATATATGTGTGTGTGTATGTATATAGGTATATATGTATGTATATAAAT
ATAATATATTTATATAAATATAATATATTATATTTATATCTATAGATTTTATATATCTATGTCTA
TATATAAATATTTATATATCTAAATAGATATAGATATATAAATAT
Found at i:71294 original size:20 final size:19
Alignment explanation
Indices: 71266--71338 Score: 94
Period size: 20 Copynumber: 3.8 Consensus size: 19
71256 ACACGTATCT
* *
71266 ATATCGATATATATAAATAG
1 ATATAGATATAGAT-AATAG
71286 ATATAGATATAGATATATAG
1 ATATAGATATAGATA-ATAG
71306 ATATAGATATAGAT-ATAG
1 ATATAGATATAGATAATAG
*
71324 ATATAGGTATAGATA
1 ATATAGATATAGATA
71339 TCTATACCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.35
19 1 0.02
20 30 0.62
ACGTcount: A:0.49, C:0.01, G:0.15, T:0.34
Consensus pattern (19 bp):
ATATAGATATAGATAATAG
Left flanking sequence: Indices 70766 -- 71265
ACCTTTTTTTATTGAAAAGGGGCACGCGCATTTAGCCTGCTTAGCCCTCGACCTTTATCTATATA
CGCGATTTTATCAAACATATCGGCTCAAGAGTTAGTTTTCAGTCGGCTAATCTCAGCCAATAGGC
AGGGGGTCATGCTCATTCCCCTGATCGCGTGGCTTGCCTTGAACTGAATGCATTGAACGCCTTGT
GAGCGGCTACAGAAACCGTCGGGATCCAAGACCGACCTAAAAGTCAGTCGTTTTGCCCTCCTATT
CCCCCTCCAATCGCACGACGCAGGATATCTGTTCGTTTTGCAGCCCCAGCTAAACTATGGGTGAA
AGCGTTTCACTACGGCCATAAACATCACCAGCGAATAATACACTAAACCTTTTATCAAGCCTGGC
TGTGGAAGTTTGACTAGTATTATTTCCTTCATTATCGCTGCAGAAAGCGCGAACCGATCCAGGAA
AAGTAGTATTTGACAGCACGCCAATATTCAGTAAAACACGTATCT
Right flanking sequence: Indices 71339 -- 71838
TCTATACCAATACCTATAGATATCTATATATCTATCTATATAGATATATAGATACCTATACATAT
ATACCTACAGGGACACATATATATATAGGTACGTATATAGGTATATAAATAGGTATATATCTATC
TATATCTATATATAGGTATATAGATATAGATAGATATGTGCCTATATACCTATCTATATATAGGT
ACACACACACGTATATAGATAGATATATAAATATATACCTATGTCTTTATATATCTATATACCTA
TATATAGGTATAGATATATATATAGCTATCTATATATCTATATATCTATATATATATCTATATAT
CTATATAGATATAGATATATATATGTGTGTGTGTATGTATATAGGTATATATGTATGTATATAAA
TATAATATATTTATATAAATATAATATATTATATTTATATCTATAGATTTTATATATCTATGTCT
ATATATAAATATTTATATATCTAAATAGATATAGATATATAAATA
Found at i:71295 original size:26 final size:26
Alignment explanation
Indices: 71266--71328 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
71256 ACACGTATCT
* *
71266 ATATCGATATATATAAATAGATATAG
1 ATATAGATATATAGAAATAGATATAG
*
71292 ATATAGATATATAGATATAGATATAG
1 ATATAGATATATAGAAATAGATATAG
71318 ATATAGATATA
1 ATATAGATATA
71329 GGTATAGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.51, C:0.02, G:0.13, T:0.35
Consensus pattern (26 bp):
ATATAGATATATAGAAATAGATATAG
Left flanking sequence: Indices 70766 -- 71265
ACCTTTTTTTATTGAAAAGGGGCACGCGCATTTAGCCTGCTTAGCCCTCGACCTTTATCTATATA
CGCGATTTTATCAAACATATCGGCTCAAGAGTTAGTTTTCAGTCGGCTAATCTCAGCCAATAGGC
AGGGGGTCATGCTCATTCCCCTGATCGCGTGGCTTGCCTTGAACTGAATGCATTGAACGCCTTGT
GAGCGGCTACAGAAACCGTCGGGATCCAAGACCGACCTAAAAGTCAGTCGTTTTGCCCTCCTATT
CCCCCTCCAATCGCACGACGCAGGATATCTGTTCGTTTTGCAGCCCCAGCTAAACTATGGGTGAA
AGCGTTTCACTACGGCCATAAACATCACCAGCGAATAATACACTAAACCTTTTATCAAGCCTGGC
TGTGGAAGTTTGACTAGTATTATTTCCTTCATTATCGCTGCAGAAAGCGCGAACCGATCCAGGAA
AAGTAGTATTTGACAGCACGCCAATATTCAGTAAAACACGTATCT
Right flanking sequence: Indices 71329 -- 71828
GGTATAGATATCTATACCAATACCTATAGATATCTATATATCTATCTATATAGATATATAGATAC
CTATACATATATACCTACAGGGACACATATATATATAGGTACGTATATAGGTATATAAATAGGTA
TATATCTATCTATATCTATATATAGGTATATAGATATAGATAGATATGTGCCTATATACCTATCT
ATATATAGGTACACACACACGTATATAGATAGATATATAAATATATACCTATGTCTTTATATATC
TATATACCTATATATAGGTATAGATATATATATAGCTATCTATATATCTATATATCTATATATAT
ATCTATATATCTATATAGATATAGATATATATATGTGTGTGTGTATGTATATAGGTATATATGTA
TGTATATAAATATAATATATTTATATAAATATAATATATTATATTTATATCTATAGATTTTATAT
ATCTATGTCTATATATAAATATTTATATATCTAAATAGATATAGA
Found at i:71450 original size:10 final size:10
Alignment explanation
Indices: 71423--71490 Score: 50
Period size: 10 Copynumber: 6.6 Consensus size: 10
71413 GGGACACATA
71423 TATATATAGG
1 TATATATAGG
71433 TACGTATATAGG
1 TA--TATATAGG
71445 TATATAAATAGG
1 TATAT--ATAGG
*
71457 TATATAT--C
1 TATATATAGG
* **
71465 TATCTATATC
1 TATATATAGG
71475 TATATATAGG
1 TATATATAGG
71485 TATATA
1 TATATA
71491 GATATAGATA
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
8 6 0.13
10 21 0.45
12 20 0.43
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (10 bp):
TATATATAGG
Left flanking sequence: Indices 70923 -- 71422
CGTGGCTTGCCTTGAACTGAATGCATTGAACGCCTTGTGAGCGGCTACAGAAACCGTCGGGATCC
AAGACCGACCTAAAAGTCAGTCGTTTTGCCCTCCTATTCCCCCTCCAATCGCACGACGCAGGATA
TCTGTTCGTTTTGCAGCCCCAGCTAAACTATGGGTGAAAGCGTTTCACTACGGCCATAAACATCA
CCAGCGAATAATACACTAAACCTTTTATCAAGCCTGGCTGTGGAAGTTTGACTAGTATTATTTCC
TTCATTATCGCTGCAGAAAGCGCGAACCGATCCAGGAAAAGTAGTATTTGACAGCACGCCAATAT
TCAGTAAAACACGTATCTATATCGATATATATAAATAGATATAGATATAGATATATAGATATAGA
TATAGATATAGATATAGGTATAGATATCTATACCAATACCTATAGATATCTATATATCTATCTAT
ATAGATATATAGATACCTATACATATATACCTACAGGGACACATA
Right flanking sequence: Indices 71491 -- 71990
GATATAGATAGATATGTGCCTATATACCTATCTATATATAGGTACACACACACGTATATAGATAG
ATATATAAATATATACCTATGTCTTTATATATCTATATACCTATATATAGGTATAGATATATATA
TAGCTATCTATATATCTATATATCTATATATATATCTATATATCTATATAGATATAGATATATAT
ATGTGTGTGTGTATGTATATAGGTATATATGTATGTATATAAATATAATATATTTATATAAATAT
AATATATTATATTTATATCTATAGATTTTATATATCTATGTCTATATATAAATATTTATATATCT
AAATAGATATAGATATATAAATATCTATATCTATATATCTAGATAATAGGTATATAAGACGGTGT
ATCGTATGAGGAGTGAACTCTTTCATTGCTCCGCCGATTATTTACTGGGCTGCGTCTTCGCTCTG
AATAGAGTGGGTTTTTTCTATATCCCTATAAGGGAATTTGATATA
Found at i:71455 original size:12 final size:12
Alignment explanation
Indices: 71421--71463 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
71411 CAGGGACACA
71421 TATATATATAGG
1 TATATATATAGG
**
71433 TACGTATATAGG
1 TATATATATAGG
*
71445 TATATAAATAGG
1 TATATATATAGG
71457 TATATAT
1 TATATAT
71464 CTATCTATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (12 bp):
TATATATATAGG
Left flanking sequence: Indices 70921 -- 71420
CGCGTGGCTTGCCTTGAACTGAATGCATTGAACGCCTTGTGAGCGGCTACAGAAACCGTCGGGAT
CCAAGACCGACCTAAAAGTCAGTCGTTTTGCCCTCCTATTCCCCCTCCAATCGCACGACGCAGGA
TATCTGTTCGTTTTGCAGCCCCAGCTAAACTATGGGTGAAAGCGTTTCACTACGGCCATAAACAT
CACCAGCGAATAATACACTAAACCTTTTATCAAGCCTGGCTGTGGAAGTTTGACTAGTATTATTT
CCTTCATTATCGCTGCAGAAAGCGCGAACCGATCCAGGAAAAGTAGTATTTGACAGCACGCCAAT
ATTCAGTAAAACACGTATCTATATCGATATATATAAATAGATATAGATATAGATATATAGATATA
GATATAGATATAGATATAGGTATAGATATCTATACCAATACCTATAGATATCTATATATCTATCT
ATATAGATATATAGATACCTATACATATATACCTACAGGGACACA
Right flanking sequence: Indices 71464 -- 71963
CTATCTATATCTATATATAGGTATATAGATATAGATAGATATGTGCCTATATACCTATCTATATA
TAGGTACACACACACGTATATAGATAGATATATAAATATATACCTATGTCTTTATATATCTATAT
ACCTATATATAGGTATAGATATATATATAGCTATCTATATATCTATATATCTATATATATATCTA
TATATCTATATAGATATAGATATATATATGTGTGTGTGTATGTATATAGGTATATATGTATGTAT
ATAAATATAATATATTTATATAAATATAATATATTATATTTATATCTATAGATTTTATATATCTA
TGTCTATATATAAATATTTATATATCTAAATAGATATAGATATATAAATATCTATATCTATATAT
CTAGATAATAGGTATATAAGACGGTGTATCGTATGAGGAGTGAACTCTTTCATTGCTCCGCCGAT
TATTTACTGGGCTGCGTCTTCGCTCTGAATAGAGTGGGTTTTTTC
Found at i:71676 original size:16 final size:16
Alignment explanation
Indices: 71545--71686 Score: 77
Period size: 16 Copynumber: 8.6 Consensus size: 16
71535 CACACACACG
*
71545 TATATAGATAGATATA
1 TATATATATAGATATA
* ** *
71561 TAAATATATACCTATG
1 TATATATATAGATATA
* * **
71577 TCTTTATATATCTATA
1 TATATATATAGATATA
*
71593 TACCTATATATAGGTATAGA
1 TA--TATATATA-G-ATATA
* *
71613 TATATATATAGCTATC
1 TATATATATAGATATA
* * *
71629 TATATATCTATATATC
1 TATATATATAGATATA
**
71645 TATATATATATCTATA
1 TATATATATAGATATA
*
71661 TATCTATATAGATATA
1 TATATATATAGATATA
*
71677 GATATATATA
1 TATATATATA
71687 TGTGTGTGTG
Statistics
Matches: 93, Mismatches: 29, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
16 72 0.77
17 1 0.01
18 15 0.16
20 5 0.05
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (16 bp):
TATATATATAGATATA
Left flanking sequence: Indices 71045 -- 71544
GCAGGATATCTGTTCGTTTTGCAGCCCCAGCTAAACTATGGGTGAAAGCGTTTCACTACGGCCAT
AAACATCACCAGCGAATAATACACTAAACCTTTTATCAAGCCTGGCTGTGGAAGTTTGACTAGTA
TTATTTCCTTCATTATCGCTGCAGAAAGCGCGAACCGATCCAGGAAAAGTAGTATTTGACAGCAC
GCCAATATTCAGTAAAACACGTATCTATATCGATATATATAAATAGATATAGATATAGATATATA
GATATAGATATAGATATAGATATAGGTATAGATATCTATACCAATACCTATAGATATCTATATAT
CTATCTATATAGATATATAGATACCTATACATATATACCTACAGGGACACATATATATATAGGTA
CGTATATAGGTATATAAATAGGTATATATCTATCTATATCTATATATAGGTATATAGATATAGAT
AGATATGTGCCTATATACCTATCTATATATAGGTACACACACACG
Right flanking sequence: Indices 71687 -- 72186
TGTGTGTGTGTATGTATATAGGTATATATGTATGTATATAAATATAATATATTTATATAAATATA
ATATATTATATTTATATCTATAGATTTTATATATCTATGTCTATATATAAATATTTATATATCTA
AATAGATATAGATATATAAATATCTATATCTATATATCTAGATAATAGGTATATAAGACGGTGTA
TCGTATGAGGAGTGAACTCTTTCATTGCTCCGCCGATTATTTACTGGGCTGCGTCTTCGCTCTGA
ATAGAGTGGGTTTTTTCTATATCCCTATAAGGGAATTTGATATACCGATACGGAGGTTCGGCAAA
TACAACAACATTGGGTTTTCCATACTCGACCTCTAAATAGTGTGGATGGTAAAAGTCTGGATAAT
GGAAAAGAACATTCCTTTTTAACCTCCCCTCATAATTCCCTCTTCTCTCTCCTATTCTTTTCTGA
ATAAAGGGAGAGAATTTTTCAAGAAAAGGATCCGAAGAACGAGGA
Found at i:71745 original size:19 final size:18
Alignment explanation
Indices: 71721--71762 Score: 75
Period size: 19 Copynumber: 2.3 Consensus size: 18
71711 TATATGTATG
71721 TATATAAATATAATATATT
1 TATATAAATATAATATA-T
71740 TATATAAATATAATATAT
1 TATATAAATATAATATAT
71758 TATAT
1 TATAT
71763 TTATATCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TATATAAATATAATATAT
Left flanking sequence: Indices 71221 -- 71720
AAGTAGTATTTGACAGCACGCCAATATTCAGTAAAACACGTATCTATATCGATATATATAAATAG
ATATAGATATAGATATATAGATATAGATATAGATATAGATATAGGTATAGATATCTATACCAATA
CCTATAGATATCTATATATCTATCTATATAGATATATAGATACCTATACATATATACCTACAGGG
ACACATATATATATAGGTACGTATATAGGTATATAAATAGGTATATATCTATCTATATCTATATA
TAGGTATATAGATATAGATAGATATGTGCCTATATACCTATCTATATATAGGTACACACACACGT
ATATAGATAGATATATAAATATATACCTATGTCTTTATATATCTATATACCTATATATAGGTATA
GATATATATATAGCTATCTATATATCTATATATCTATATATATATCTATATATCTATATAGATAT
AGATATATATATGTGTGTGTGTATGTATATAGGTATATATGTATG
Right flanking sequence: Indices 71763 -- 72262
TTATATCTATAGATTTTATATATCTATGTCTATATATAAATATTTATATATCTAAATAGATATAG
ATATATAAATATCTATATCTATATATCTAGATAATAGGTATATAAGACGGTGTATCGTATGAGGA
GTGAACTCTTTCATTGCTCCGCCGATTATTTACTGGGCTGCGTCTTCGCTCTGAATAGAGTGGGT
TTTTTCTATATCCCTATAAGGGAATTTGATATACCGATACGGAGGTTCGGCAAATACAACAACAT
TGGGTTTTCCATACTCGACCTCTAAATAGTGTGGATGGTAAAAGTCTGGATAATGGAAAAGAACA
TTCCTTTTTAACCTCCCCTCATAATTCCCTCTTCTCTCTCCTATTCTTTTCTGAATAAAGGGAGA
GAATTTTTCAAGAAAAGGATCCGAAGAACGAGGAATAGATATTCCCCGAAGAAAGGGATAAAACA
GAGGTCTCAAAAAAGTTCGTTTTACTCCTTTCTTCAGTTGTCTTA
Found at i:71871 original size:2 final size:2
Alignment explanation
Indices: 71581--71853 Score: 122
Period size: 2 Copynumber: 138.5 Consensus size: 2
71571 CCTATGTCTT
* ** ** *
71581 TA TA TA TC TA TA TA CC TA TA TA TA GG TA TA GA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
** * * * * *
71623 GC TA TC TA TA TA TC TA TA TA TC TA TA TA TA TA TC TA TA TA TC
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * * *
71665 TA TA TA GA TA TA GA TA TA TA TA TG TG TG TG TG TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
** * * * * *
71707 GG TA TA TA TG TA TG TA TA TA AA TA TA -A TA TA TT TA TA TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
71748 TA TA -A TA TA T- TA TA TT TA TA TC TA TA GA T- TT TA TA TA TC
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * * *
71787 TA TG TC TA TA TA TA AA TA TT TA TA TA TC TA AA TA GA TA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
71829 TA TA TA AA TA TC TA TA TC TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
71854 CTAGATAATA
Statistics
Matches: 189, Mismatches: 78, Indels: 8
0.69 0.28 0.03
Matches are distributed among these distances:
1 4 0.02
2 185 0.98
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 71081 -- 71580
TATGGGTGAAAGCGTTTCACTACGGCCATAAACATCACCAGCGAATAATACACTAAACCTTTTAT
CAAGCCTGGCTGTGGAAGTTTGACTAGTATTATTTCCTTCATTATCGCTGCAGAAAGCGCGAACC
GATCCAGGAAAAGTAGTATTTGACAGCACGCCAATATTCAGTAAAACACGTATCTATATCGATAT
ATATAAATAGATATAGATATAGATATATAGATATAGATATAGATATAGATATAGGTATAGATATC
TATACCAATACCTATAGATATCTATATATCTATCTATATAGATATATAGATACCTATACATATAT
ACCTACAGGGACACATATATATATAGGTACGTATATAGGTATATAAATAGGTATATATCTATCTA
TATCTATATATAGGTATATAGATATAGATAGATATGTGCCTATATACCTATCTATATATAGGTAC
ACACACACGTATATAGATAGATATATAAATATATACCTATGTCTT
Right flanking sequence: Indices 71854 -- 72353
CTAGATAATAGGTATATAAGACGGTGTATCGTATGAGGAGTGAACTCTTTCATTGCTCCGCCGAT
TATTTACTGGGCTGCGTCTTCGCTCTGAATAGAGTGGGTTTTTTCTATATCCCTATAAGGGAATT
TGATATACCGATACGGAGGTTCGGCAAATACAACAACATTGGGTTTTCCATACTCGACCTCTAAA
TAGTGTGGATGGTAAAAGTCTGGATAATGGAAAAGAACATTCCTTTTTAACCTCCCCTCATAATT
CCCTCTTCTCTCTCCTATTCTTTTCTGAATAAAGGGAGAGAATTTTTCAAGAAAAGGATCCGAAG
AACGAGGAATAGATATTCCCCGAAGAAAGGGATAAAACAGAGGTCTCAAAAAAGTTCGTTTTACT
CCTTTCTTCAGTTGTCTTACTGATCTTCCAATTCGTTTTGTCCTCTCTCTATACTCTGTTATGTT
CGATCTAATAATATCTTTAGAAGCCTCCCTAATAGATATGGGATC
Found at i:72941 original size:6 final size:6
Alignment explanation
Indices: 72932--72979 Score: 51
Period size: 6 Copynumber: 7.5 Consensus size: 6
72922 ATCTATATAG
* *
72932 ATAGAT ATAGAT ATATAAT ATAGATAT ATAGAT AGAGAT ATAGAT ATA
1 ATAGAT ATAGAT ATA-GAT ATAG--AT ATAGAT ATAGAT ATAGAT ATA
72980 TCTATCTATC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
6 24 0.69
7 5 0.14
8 6 0.17
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (6 bp):
ATAGAT
Left flanking sequence: Indices 72432 -- 72931
TGCTTGTAAGATATGTTTACGGAAAGAAATACGAACCGGAATAACGTCCAATCTCCTTTCCAGAA
GGGGTAGAAAACTTATGTTTCTCTTGATAGTGCTTAATAATGGTTTAACCTTTCGGAGCTTTTTC
TTCATGGGTAATCCATAAAAGAGGGACAACTTTCGTGGGGTTTGTGGTTTTTCGAAAAAACCCTC
AGATTTACGTCTTTTGAATGGTTTTTTTCGAAGCTCTTTCCGGAAGGTCAACCCCCAAACGAGAG
CTCTCTTTCTCGGATTAAGTCTTCTATGCCGAACGTTTTCCTTCATTTGACGACGAATTTTAGAT
CCCGATGCAAGCATATCTCGTTTACTCTTTCTTCTATTTGAGAGATGAAATCCACACTGAAGTTT
GCTTTGTCACTTATATATCTACACATACATCTATATAGGTATATACATCTACAGACATATAAGAT
ATATTTTTATATAGAAATATATCTTATATATCTATATCTATATAG
Right flanking sequence: Indices 72980 -- 73479
TCTATCTATCTATCTATCTATCTATATAGATAGTTATATATATAATATATATACACCTATATATA
CCTATATATATACGTGTATAGGCATATATCTATATGTACCTACAGGCATATATATAGACAGGCCT
ATATGTATATCTATACCTATATATCTATACCTATATCTATATGTATAGATATATAGGTATAGATA
TATCTATAGATATAGGTATATAGATATACTATCTATATAGATATATATAGATATATATATATCTA
TATAGATATATATAGATACATATTATAAGGAAACAGTCTTGACTAAACAACACCAATCCTCTTGA
TTCGAGTCGACTTTCATCGGACGGAAGACCGACTTGACGTTCCTCTGCGTTTCGTCTGCTCCATC
CTGGATGTTTATTATTACCCTGTAAAACTAAGCCTTCCATGGCCTGCTAGGCTTTACGAGGACCA
AACCATATTTACCTTCCAACACCGGTGAAGGCGATCAATATCTTG
Found at i:73021 original size:4 final size:4
Alignment explanation
Indices: 72911--73056 Score: 64
Period size: 4 Copynumber: 37.0 Consensus size: 4
72901 AAATATATCT
* * * * * *
72911 TATA TATC TATA TCTA TATA GATA GATA TAGA TATA TA-A TATA GATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * * * * * * *
72958 TATA GATA GAGA TATA GATA TATC TATC TATC TATC TATC TATC TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * ** **
73006 TAGA TAGT- TATA TATA TA-A TATA TATA CACC TATA TATA CCTA TATA
1 TATA TA-TA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
73053 TATA
1 TATA
73057 CGTGTATAGG
Statistics
Matches: 108, Mismatches: 30, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
3 7 0.06
4 101 0.94
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (4 bp):
TATA
Left flanking sequence: Indices 72411 -- 72910
TTTATGTCTCACTGGCTGTCTTGCTTGTAAGATATGTTTACGGAAAGAAATACGAACCGGAATAA
CGTCCAATCTCCTTTCCAGAAGGGGTAGAAAACTTATGTTTCTCTTGATAGTGCTTAATAATGGT
TTAACCTTTCGGAGCTTTTTCTTCATGGGTAATCCATAAAAGAGGGACAACTTTCGTGGGGTTTG
TGGTTTTTCGAAAAAACCCTCAGATTTACGTCTTTTGAATGGTTTTTTTCGAAGCTCTTTCCGGA
AGGTCAACCCCCAAACGAGAGCTCTCTTTCTCGGATTAAGTCTTCTATGCCGAACGTTTTCCTTC
ATTTGACGACGAATTTTAGATCCCGATGCAAGCATATCTCGTTTACTCTTTCTTCTATTTGAGAG
ATGAAATCCACACTGAAGTTTGCTTTGTCACTTATATATCTACACATACATCTATATAGGTATAT
ACATCTACAGACATATAAGATATATTTTTATATAGAAATATATCT
Right flanking sequence: Indices 73057 -- 73556
CGTGTATAGGCATATATCTATATGTACCTACAGGCATATATATAGACAGGCCTATATGTATATCT
ATACCTATATATCTATACCTATATCTATATGTATAGATATATAGGTATAGATATATCTATAGATA
TAGGTATATAGATATACTATCTATATAGATATATATAGATATATATATATCTATATAGATATATA
TAGATACATATTATAAGGAAACAGTCTTGACTAAACAACACCAATCCTCTTGATTCGAGTCGACT
TTCATCGGACGGAAGACCGACTTGACGTTCCTCTGCGTTTCGTCTGCTCCATCCTGGATGTTTAT
TATTACCCTGTAAAACTAAGCCTTCCATGGCCTGCTAGGCTTTACGAGGACCAAACCATATTTAC
CTTCCAACACCGGTGAAGGCGATCAATATCTTGGAATTGAACATAGTATGGTCAAGTAATAATGG
AGAATAGAGAGATTTCTGCTGGAGTCTTTGAACACGACGTTTTTT
Found at i:73123 original size:12 final size:12
Alignment explanation
Indices: 73108--73156 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
73098 ATAGACAGGC
73108 CTATATGTATAT
1 CTATATGTATAT
*
73120 CTATACCTATATAT
1 CTATA--TGTATAT
**
73134 CTATACCTATAT
1 CTATATGTATAT
73146 CTATATGTATA
1 CTATATGTATA
73157 GATATATAGG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
12 19 0.63
14 11 0.37
ACGTcount: A:0.35, C:0.16, G:0.04, T:0.45
Consensus pattern (12 bp):
CTATATGTATAT
Left flanking sequence: Indices 72608 -- 73107
GTTTTTCGAAAAAACCCTCAGATTTACGTCTTTTGAATGGTTTTTTTCGAAGCTCTTTCCGGAAG
GTCAACCCCCAAACGAGAGCTCTCTTTCTCGGATTAAGTCTTCTATGCCGAACGTTTTCCTTCAT
TTGACGACGAATTTTAGATCCCGATGCAAGCATATCTCGTTTACTCTTTCTTCTATTTGAGAGAT
GAAATCCACACTGAAGTTTGCTTTGTCACTTATATATCTACACATACATCTATATAGGTATATAC
ATCTACAGACATATAAGATATATTTTTATATAGAAATATATCTTATATATCTATATCTATATAGA
TAGATATAGATATATAATATAGATATATAGATAGAGATATAGATATATCTATCTATCTATCTATC
TATCTATATAGATAGTTATATATATAATATATATACACCTATATATACCTATATATATACGTGTA
TAGGCATATATCTATATGTACCTACAGGCATATATATAGACAGGC
Right flanking sequence: Indices 73157 -- 73656
GATATATAGGTATAGATATATCTATAGATATAGGTATATAGATATACTATCTATATAGATATATA
TAGATATATATATATCTATATAGATATATATAGATACATATTATAAGGAAACAGTCTTGACTAAA
CAACACCAATCCTCTTGATTCGAGTCGACTTTCATCGGACGGAAGACCGACTTGACGTTCCTCTG
CGTTTCGTCTGCTCCATCCTGGATGTTTATTATTACCCTGTAAAACTAAGCCTTCCATGGCCTGC
TAGGCTTTACGAGGACCAAACCATATTTACCTTCCAACACCGGTGAAGGCGATCAATATCTTGGA
ATTGAACATAGTATGGTCAAGTAATAATGGAGAATAGAGAGATTTCTGCTGGAGTCTTTGAACAC
GACGTTTTTTGGGGGGTCGGCATCCATTATGCGGCATTGGGGTTACATCGCGAATCTCGGTAATA
ATAAGACCTCCTTCCCTTGAACCTTTTGGCGAACAGTTCTTTCTG
Found at i:73132 original size:14 final size:14
Alignment explanation
Indices: 73115--73145 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
73105 GGCCTATATG
73115 TATATCTATACCTA
1 TATATCTATACCTA
73129 TATATCTATACCTA
1 TATATCTATACCTA
73143 TAT
1 TAT
73146 CTATATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATCTATACCTA
Left flanking sequence: Indices 72615 -- 73114
GAAAAAACCCTCAGATTTACGTCTTTTGAATGGTTTTTTTCGAAGCTCTTTCCGGAAGGTCAACC
CCCAAACGAGAGCTCTCTTTCTCGGATTAAGTCTTCTATGCCGAACGTTTTCCTTCATTTGACGA
CGAATTTTAGATCCCGATGCAAGCATATCTCGTTTACTCTTTCTTCTATTTGAGAGATGAAATCC
ACACTGAAGTTTGCTTTGTCACTTATATATCTACACATACATCTATATAGGTATATACATCTACA
GACATATAAGATATATTTTTATATAGAAATATATCTTATATATCTATATCTATATAGATAGATAT
AGATATATAATATAGATATATAGATAGAGATATAGATATATCTATCTATCTATCTATCTATCTAT
ATAGATAGTTATATATATAATATATATACACCTATATATACCTATATATATACGTGTATAGGCAT
ATATCTATATGTACCTACAGGCATATATATAGACAGGCCTATATG
Right flanking sequence: Indices 73146 -- 73645
CTATATGTATAGATATATAGGTATAGATATATCTATAGATATAGGTATATAGATATACTATCTAT
ATAGATATATATAGATATATATATATCTATATAGATATATATAGATACATATTATAAGGAAACAG
TCTTGACTAAACAACACCAATCCTCTTGATTCGAGTCGACTTTCATCGGACGGAAGACCGACTTG
ACGTTCCTCTGCGTTTCGTCTGCTCCATCCTGGATGTTTATTATTACCCTGTAAAACTAAGCCTT
CCATGGCCTGCTAGGCTTTACGAGGACCAAACCATATTTACCTTCCAACACCGGTGAAGGCGATC
AATATCTTGGAATTGAACATAGTATGGTCAAGTAATAATGGAGAATAGAGAGATTTCTGCTGGAG
TCTTTGAACACGACGTTTTTTGGGGGGTCGGCATCCATTATGCGGCATTGGGGTTACATCGCGAA
TCTCGGTAATAATAAGACCTCCTTCCCTTGAACCTTTTGGCGAAC
Found at i:73132 original size:20 final size:20
Alignment explanation
Indices: 73109--73151 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
73099 TAGACAGGCC
* *
73109 TATATGTATATCTATACCTA
1 TATATCTATACCTATACCTA
*
73129 TATATCTATACCTATATCTA
1 TATATCTATACCTATACCTA
73149 TAT
1 TAT
73152 GTATAGATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.16, G:0.02, T:0.47
Consensus pattern (20 bp):
TATATCTATACCTATACCTA
Left flanking sequence: Indices 72609 -- 73108
TTTTTCGAAAAAACCCTCAGATTTACGTCTTTTGAATGGTTTTTTTCGAAGCTCTTTCCGGAAGG
TCAACCCCCAAACGAGAGCTCTCTTTCTCGGATTAAGTCTTCTATGCCGAACGTTTTCCTTCATT
TGACGACGAATTTTAGATCCCGATGCAAGCATATCTCGTTTACTCTTTCTTCTATTTGAGAGATG
AAATCCACACTGAAGTTTGCTTTGTCACTTATATATCTACACATACATCTATATAGGTATATACA
TCTACAGACATATAAGATATATTTTTATATAGAAATATATCTTATATATCTATATCTATATAGAT
AGATATAGATATATAATATAGATATATAGATAGAGATATAGATATATCTATCTATCTATCTATCT
ATCTATATAGATAGTTATATATATAATATATATACACCTATATATACCTATATATATACGTGTAT
AGGCATATATCTATATGTACCTACAGGCATATATATAGACAGGCC
Right flanking sequence: Indices 73152 -- 73651
GTATAGATATATAGGTATAGATATATCTATAGATATAGGTATATAGATATACTATCTATATAGAT
ATATATAGATATATATATATCTATATAGATATATATAGATACATATTATAAGGAAACAGTCTTGA
CTAAACAACACCAATCCTCTTGATTCGAGTCGACTTTCATCGGACGGAAGACCGACTTGACGTTC
CTCTGCGTTTCGTCTGCTCCATCCTGGATGTTTATTATTACCCTGTAAAACTAAGCCTTCCATGG
CCTGCTAGGCTTTACGAGGACCAAACCATATTTACCTTCCAACACCGGTGAAGGCGATCAATATC
TTGGAATTGAACATAGTATGGTCAAGTAATAATGGAGAATAGAGAGATTTCTGCTGGAGTCTTTG
AACACGACGTTTTTTGGGGGGTCGGCATCCATTATGCGGCATTGGGGTTACATCGCGAATCTCGG
TAATAATAAGACCTCCTTCCCTTGAACCTTTTGGCGAACAGTTCT
Found at i:73162 original size:6 final size:6
Alignment explanation
Indices: 73160--73257 Score: 53
Period size: 6 Copynumber: 16.5 Consensus size: 6
73150 ATGTATAGAT
* * * * **
73160 ATATAG GTATAG ATATAT CTATAG ATATAGG TATATAG ATATA- CTATCT
1 ATATAG ATATAG ATATAG ATATAG ATATA-G -ATATAG ATATAG ATATAG
* *
73209 ATATAG ATAT-- ATATAG ATATAT ATATATCT ATATAG ATAT-- ATATAG
1 ATATAG ATATAG ATATAG ATATAG ATATA--G ATATAG ATATAG ATATAG
73255 ATA
1 ATA
73258 CATATTATAA
Statistics
Matches: 70, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
4 8 0.11
5 3 0.04
6 46 0.66
7 2 0.03
8 11 0.16
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (6 bp):
ATATAG
Left flanking sequence: Indices 72660 -- 73159
CTCTTTCCGGAAGGTCAACCCCCAAACGAGAGCTCTCTTTCTCGGATTAAGTCTTCTATGCCGAA
CGTTTTCCTTCATTTGACGACGAATTTTAGATCCCGATGCAAGCATATCTCGTTTACTCTTTCTT
CTATTTGAGAGATGAAATCCACACTGAAGTTTGCTTTGTCACTTATATATCTACACATACATCTA
TATAGGTATATACATCTACAGACATATAAGATATATTTTTATATAGAAATATATCTTATATATCT
ATATCTATATAGATAGATATAGATATATAATATAGATATATAGATAGAGATATAGATATATCTAT
CTATCTATCTATCTATCTATATAGATAGTTATATATATAATATATATACACCTATATATACCTAT
ATATATACGTGTATAGGCATATATCTATATGTACCTACAGGCATATATATAGACAGGCCTATATG
TATATCTATACCTATATATCTATACCTATATCTATATGTATAGAT
Right flanking sequence: Indices 73258 -- 73757
CATATTATAAGGAAACAGTCTTGACTAAACAACACCAATCCTCTTGATTCGAGTCGACTTTCATC
GGACGGAAGACCGACTTGACGTTCCTCTGCGTTTCGTCTGCTCCATCCTGGATGTTTATTATTAC
CCTGTAAAACTAAGCCTTCCATGGCCTGCTAGGCTTTACGAGGACCAAACCATATTTACCTTCCA
ACACCGGTGAAGGCGATCAATATCTTGGAATTGAACATAGTATGGTCAAGTAATAATGGAGAATA
GAGAGATTTCTGCTGGAGTCTTTGAACACGACGTTTTTTGGGGGGTCGGCATCCATTATGCGGCA
TTGGGGTTACATCGCGAATCTCGGTAATAATAAGACCTCCTTCCCTTGAACCTTTTGGCGAACAG
TTCTTTCTGGAAAGACCAATTCCCTTTATCCTCACTTCAACCGACTCAATCTTTGGTAAAATGGC
AGCTCGCGCGACATGTTCTGCAGTTGCGTGAGCTGCATACTTGGT
Found at i:73162 original size:12 final size:12
Alignment explanation
Indices: 73147--73194 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
73137 TACCTATATC
73147 TATATGTATAGA
1 TATATGTATAGA
73159 TATATAGGTATAGA
1 TATAT--GTATAGA
*
73173 TATATCTATAGA
1 TATATGTATAGA
*
73185 TATAGGTATA
1 TATATGTATA
73195 TAGATATACT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 19 0.61
14 12 0.39
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (12 bp):
TATATGTATAGA
Left flanking sequence: Indices 72647 -- 73146
GTTTTTTTCGAAGCTCTTTCCGGAAGGTCAACCCCCAAACGAGAGCTCTCTTTCTCGGATTAAGT
CTTCTATGCCGAACGTTTTCCTTCATTTGACGACGAATTTTAGATCCCGATGCAAGCATATCTCG
TTTACTCTTTCTTCTATTTGAGAGATGAAATCCACACTGAAGTTTGCTTTGTCACTTATATATCT
ACACATACATCTATATAGGTATATACATCTACAGACATATAAGATATATTTTTATATAGAAATAT
ATCTTATATATCTATATCTATATAGATAGATATAGATATATAATATAGATATATAGATAGAGATA
TAGATATATCTATCTATCTATCTATCTATCTATATAGATAGTTATATATATAATATATATACACC
TATATATACCTATATATATACGTGTATAGGCATATATCTATATGTACCTACAGGCATATATATAG
ACAGGCCTATATGTATATCTATACCTATATATCTATACCTATATC
Right flanking sequence: Indices 73195 -- 73694
TAGATATACTATCTATATAGATATATATAGATATATATATATCTATATAGATATATATAGATACA
TATTATAAGGAAACAGTCTTGACTAAACAACACCAATCCTCTTGATTCGAGTCGACTTTCATCGG
ACGGAAGACCGACTTGACGTTCCTCTGCGTTTCGTCTGCTCCATCCTGGATGTTTATTATTACCC
TGTAAAACTAAGCCTTCCATGGCCTGCTAGGCTTTACGAGGACCAAACCATATTTACCTTCCAAC
ACCGGTGAAGGCGATCAATATCTTGGAATTGAACATAGTATGGTCAAGTAATAATGGAGAATAGA
GAGATTTCTGCTGGAGTCTTTGAACACGACGTTTTTTGGGGGGTCGGCATCCATTATGCGGCATT
GGGGTTACATCGCGAATCTCGGTAATAATAAGACCTCCTTCCCTTGAACCTTTTGGCGAACAGTT
CTTTCTGGAAAGACCAATTCCCTTTATCCTCACTTCAACCGACTC
Found at i:73164 original size:14 final size:14
Alignment explanation
Indices: 73147--73266 Score: 84
Period size: 14 Copynumber: 8.4 Consensus size: 14
73137 TACCTATATC
*
73147 TATATGTATAGATA
1 TATATATATAGATA
**
73161 TATAGGTATAG--A
1 TATATATATAGATA
*
73173 TATATCTATAGATA
1 TATATATATAGATA
**
73187 TAGGTATATAGATA
1 TATATATATAGATA
73201 TACTATCTATATAGATA
1 TA-TA--TATATAGATA
*
73218 TATATAGATATATATA
1 TATAT--ATATAGATA
*
73234 TATCTATATAGATA
1 TATATATATAGATA
* *
73248 TATATAGATACATA
1 TATATATATAGATA
73262 T-TATA
1 TATATA
73267 AGGAAACAGT
Statistics
Matches: 85, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
12 10 0.12
13 4 0.05
14 45 0.53
16 14 0.16
17 12 0.14
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (14 bp):
TATATATATAGATA
Left flanking sequence: Indices 72647 -- 73146
GTTTTTTTCGAAGCTCTTTCCGGAAGGTCAACCCCCAAACGAGAGCTCTCTTTCTCGGATTAAGT
CTTCTATGCCGAACGTTTTCCTTCATTTGACGACGAATTTTAGATCCCGATGCAAGCATATCTCG
TTTACTCTTTCTTCTATTTGAGAGATGAAATCCACACTGAAGTTTGCTTTGTCACTTATATATCT
ACACATACATCTATATAGGTATATACATCTACAGACATATAAGATATATTTTTATATAGAAATAT
ATCTTATATATCTATATCTATATAGATAGATATAGATATATAATATAGATATATAGATAGAGATA
TAGATATATCTATCTATCTATCTATCTATCTATATAGATAGTTATATATATAATATATATACACC
TATATATACCTATATATATACGTGTATAGGCATATATCTATATGTACCTACAGGCATATATATAG
ACAGGCCTATATGTATATCTATACCTATATATCTATACCTATATC
Right flanking sequence: Indices 73267 -- 73766
AGGAAACAGTCTTGACTAAACAACACCAATCCTCTTGATTCGAGTCGACTTTCATCGGACGGAAG
ACCGACTTGACGTTCCTCTGCGTTTCGTCTGCTCCATCCTGGATGTTTATTATTACCCTGTAAAA
CTAAGCCTTCCATGGCCTGCTAGGCTTTACGAGGACCAAACCATATTTACCTTCCAACACCGGTG
AAGGCGATCAATATCTTGGAATTGAACATAGTATGGTCAAGTAATAATGGAGAATAGAGAGATTT
CTGCTGGAGTCTTTGAACACGACGTTTTTTGGGGGGTCGGCATCCATTATGCGGCATTGGGGTTA
CATCGCGAATCTCGGTAATAATAAGACCTCCTTCCCTTGAACCTTTTGGCGAACAGTTCTTTCTG
GAAAGACCAATTCCCTTTATCCTCACTTCAACCGACTCAATCTTTGGTAAAATGGCAGCTCGCGC
GACATGTTCTGCAGTTGCGTGAGCTGCATACTTGGTCGAGCGACG
Found at i:73170 original size:8 final size:8
Alignment explanation
Indices: 73153--73251 Score: 58
Period size: 8 Copynumber: 12.5 Consensus size: 8
73143 TATCTATATG
73153 TATAGATA
1 TATAGATA
*
73161 TATAGGTA
1 TATAGATA
* *
73169 TAGATATA
1 TATAGATA
* * *
73177 TCTATAGA
1 TATAGATA
*
73185 TATAGGTA
1 TATAGATA
73193 TATAGATA
1 TATAGATA
**
73201 TACTATCTA
1 TA-TAGATA
73210 TATAGATA
1 TATAGATA
73218 TAT--ATA
1 TATAGATA
* *
73224 GATATATA
1 TATAGATA
**
73232 TATATCTA
1 TATAGATA
73240 TATAGATA
1 TATAGATA
73248 TATA
1 TATA
73252 TAGATACATA
Statistics
Matches: 67, Mismatches: 21, Indels: 6
0.71 0.22 0.06
Matches are distributed among these distances:
6 5 0.07
8 56 0.84
9 6 0.09
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.40
Consensus pattern (8 bp):
TATAGATA
Left flanking sequence: Indices 72653 -- 73152
TTCGAAGCTCTTTCCGGAAGGTCAACCCCCAAACGAGAGCTCTCTTTCTCGGATTAAGTCTTCTA
TGCCGAACGTTTTCCTTCATTTGACGACGAATTTTAGATCCCGATGCAAGCATATCTCGTTTACT
CTTTCTTCTATTTGAGAGATGAAATCCACACTGAAGTTTGCTTTGTCACTTATATATCTACACAT
ACATCTATATAGGTATATACATCTACAGACATATAAGATATATTTTTATATAGAAATATATCTTA
TATATCTATATCTATATAGATAGATATAGATATATAATATAGATATATAGATAGAGATATAGATA
TATCTATCTATCTATCTATCTATCTATATAGATAGTTATATATATAATATATATACACCTATATA
TACCTATATATATACGTGTATAGGCATATATCTATATGTACCTACAGGCATATATATAGACAGGC
CTATATGTATATCTATACCTATATATCTATACCTATATCTATATG
Right flanking sequence: Indices 73252 -- 73751
TAGATACATATTATAAGGAAACAGTCTTGACTAAACAACACCAATCCTCTTGATTCGAGTCGACT
TTCATCGGACGGAAGACCGACTTGACGTTCCTCTGCGTTTCGTCTGCTCCATCCTGGATGTTTAT
TATTACCCTGTAAAACTAAGCCTTCCATGGCCTGCTAGGCTTTACGAGGACCAAACCATATTTAC
CTTCCAACACCGGTGAAGGCGATCAATATCTTGGAATTGAACATAGTATGGTCAAGTAATAATGG
AGAATAGAGAGATTTCTGCTGGAGTCTTTGAACACGACGTTTTTTGGGGGGTCGGCATCCATTAT
GCGGCATTGGGGTTACATCGCGAATCTCGGTAATAATAAGACCTCCTTCCCTTGAACCTTTTGGC
GAACAGTTCTTTCTGGAAAGACCAATTCCCTTTATCCTCACTTCAACCGACTCAATCTTTGGTAA
AATGGCAGCTCGCGCGACATGTTCTGCAGTTGCGTGAGCTGCATA
Found at i:73223 original size:10 final size:10
Alignment explanation
Indices: 73167--73262 Score: 84
Period size: 10 Copynumber: 9.3 Consensus size: 10
73157 GATATATAGG
73167 TATAGATATA
1 TATAGATATA
73177 TCTATAGATATA
1 --TATAGATATA
** * *
73189 GGTATATAGA
1 TATAGATATA
* *
73199 TATACTATCTA
1 TATA-GATATA
73210 TATAGATATA
1 TATAGATATA
73220 TATAGATATA
1 TATAGATATA
* *
73230 TATATATCTA
1 TATAGATATA
73240 TATAGATATA
1 TATAGATATA
*
73250 TATAGATACA
1 TATAGATATA
73260 TAT
1 TAT
73263 TATAAGGAAA
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
10 50 0.74
11 8 0.12
12 10 0.15
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (10 bp):
TATAGATATA
Left flanking sequence: Indices 72667 -- 73166
CGGAAGGTCAACCCCCAAACGAGAGCTCTCTTTCTCGGATTAAGTCTTCTATGCCGAACGTTTTC
CTTCATTTGACGACGAATTTTAGATCCCGATGCAAGCATATCTCGTTTACTCTTTCTTCTATTTG
AGAGATGAAATCCACACTGAAGTTTGCTTTGTCACTTATATATCTACACATACATCTATATAGGT
ATATACATCTACAGACATATAAGATATATTTTTATATAGAAATATATCTTATATATCTATATCTA
TATAGATAGATATAGATATATAATATAGATATATAGATAGAGATATAGATATATCTATCTATCTA
TCTATCTATCTATATAGATAGTTATATATATAATATATATACACCTATATATACCTATATATATA
CGTGTATAGGCATATATCTATATGTACCTACAGGCATATATATAGACAGGCCTATATGTATATCT
ATACCTATATATCTATACCTATATCTATATGTATAGATATATAGG
Right flanking sequence: Indices 73263 -- 73762
TATAAGGAAACAGTCTTGACTAAACAACACCAATCCTCTTGATTCGAGTCGACTTTCATCGGACG
GAAGACCGACTTGACGTTCCTCTGCGTTTCGTCTGCTCCATCCTGGATGTTTATTATTACCCTGT
AAAACTAAGCCTTCCATGGCCTGCTAGGCTTTACGAGGACCAAACCATATTTACCTTCCAACACC
GGTGAAGGCGATCAATATCTTGGAATTGAACATAGTATGGTCAAGTAATAATGGAGAATAGAGAG
ATTTCTGCTGGAGTCTTTGAACACGACGTTTTTTGGGGGGTCGGCATCCATTATGCGGCATTGGG
GTTACATCGCGAATCTCGGTAATAATAAGACCTCCTTCCCTTGAACCTTTTGGCGAACAGTTCTT
TCTGGAAAGACCAATTCCCTTTATCCTCACTTCAACCGACTCAATCTTTGGTAAAATGGCAGCTC
GCGCGACATGTTCTGCAGTTGCGTGAGCTGCATACTTGGTCGAGC
Found at i:74073 original size:4 final size:4
Alignment explanation
Indices: 74064--74132 Score: 138
Period size: 4 Copynumber: 17.2 Consensus size: 4
74054 TTACTTCATA
74064 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
74112 GTGC GTGC GTGC GTGC GTGC G
1 GTGC GTGC GTGC GTGC GTGC G
74133 GAAAACACTG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 65 1.00
ACGTcount: A:0.00, C:0.25, G:0.51, T:0.25
Consensus pattern (4 bp):
GTGC
Left flanking sequence: Indices 73564 -- 74063
CGGCATCCATTATGCGGCATTGGGGTTACATCGCGAATCTCGGTAATAATAAGACCTCCTTCCCT
TGAACCTTTTGGCGAACAGTTCTTTCTGGAAAGACCAATTCCCTTTATCCTCACTTCAACCGACT
CAATCTTTGGTAAAATGGCAGCTCGCGCGACATGTTCTGCAGTTGCGTGAGCTGCATACTTGGTC
GAGCGACGAGAACCCTTGAAACCCTTCAAACAACCCGAGGAGGACCCTGTTTTTTCATCCCCCCT
AGAATCCGTGACAGTTATAAAGGTATTACTAGAAGTCGCGTTAATATAGGCAATACCGTGGTGTT
TAGAGGGCTCATGGTGGTTTTTCCATTGCCGCCGATGGCAAGGCTGCTGCTGTTGGTGGTTAGAG
GGCTTTGGCATGATTTGGGTTCTCCCTTTCATTCTTTTCGGTCTCGTTGGCTATCATCGATTCGT
GGGGTCGCATCCGTTGACTAATAGAGAGAGAATAGTTACTTCATA
Right flanking sequence: Indices 74133 -- 74632
GAAAACACTGGGAGACCGGGAGGGGGACTGGGGATTGGGGGCCCCTGCCCCCAAAGAGTAATCCC
CACCCAATGAGTGCCACGAAGAATGAGGGAAGGAGTTCCGAGTGGTTCCTTAACGGTAGCTGCGC
TCAGATTCTTTTGTTTAAACCTTGGATCCCGACAACTGTATTCACTTTAATTAAAAGTGGCACGA
ATCCCCTAAAAGTTGTGAGAAATCCGTGCCTACCTTTGTAAGTAAAGAATGAGGGCCTTTCCTCC
GTGCAAGCCTACCTTTGTAATCTCGAAACTCTTCGGCAGAAGTTGGTTCCAAGGTGTGCCACAGT
TTTCGAATAGGCACGGGGGAACCTTTTGCCGTGCCCCTTGCCAGGTTGTTTCGCTTACAAGGGTA
GGCTGGCACGGGGGAAAGAACCTTCTCTTCTGCAAGCAACTTCTGCCGTGCCGAACAACCTTTAA
GGCTGTTTCGAAGGCCGAAAAGGTTGTTTCGAAAACTAACTCTCT
Found at i:74637 original size:4 final size:4
Alignment explanation
Indices: 74630--74654 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
74620 AAACTAACTC
74630 TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT T
74655 TGGTGGCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Left flanking sequence: Indices 74130 -- 74629
GCGGAAAACACTGGGAGACCGGGAGGGGGACTGGGGATTGGGGGCCCCTGCCCCCAAAGAGTAAT
CCCCACCCAATGAGTGCCACGAAGAATGAGGGAAGGAGTTCCGAGTGGTTCCTTAACGGTAGCTG
CGCTCAGATTCTTTTGTTTAAACCTTGGATCCCGACAACTGTATTCACTTTAATTAAAAGTGGCA
CGAATCCCCTAAAAGTTGTGAGAAATCCGTGCCTACCTTTGTAAGTAAAGAATGAGGGCCTTTCC
TCCGTGCAAGCCTACCTTTGTAATCTCGAAACTCTTCGGCAGAAGTTGGTTCCAAGGTGTGCCAC
AGTTTTCGAATAGGCACGGGGGAACCTTTTGCCGTGCCCCTTGCCAGGTTGTTTCGCTTACAAGG
GTAGGCTGGCACGGGGGAAAGAACCTTCTCTTCTGCAAGCAACTTCTGCCGTGCCGAACAACCTT
TAAGGCTGTTTCGAAGGCCGAAAAGGTTGTTTCGAAAACTAACTC
Right flanking sequence: Indices 74655 -- 75154
TGGTGGCTAAACGAACTCTTATGCCGTGCCTTTGGTTCCAGGGCCTTCCCCCAAGAAGTGGCACA
CCTTCACTTCGCTGCGAAAAACAACCCGCACTCTCTTTTGAAATCCGTCCTTGGAACCAAAAAGC
TCTGCTCTGCTCTGCAACCCTTCTGCACGGCACGAAAAGGTTGTTTCGAAATTACAAAGGTATGT
GCAGAAGGGTGTAAGTTCTCCGAGCACCGCGAGCAGAAGTTCACACAAACTTCTTGGGCCGATTT
CCAGAAGGTTGGTTGGAACTTCTGCGTTGTTGGTTGGCTGGTTCTTCGCGCAGCGAAGTGAAGGT
AGGCACGGATCTTTTTTCAGGCCCTCATTGGCACGAATGTTTAGCCTTCAAAGCAAAGCGCCCGA
AAAGCTAGCTTCTATCCCTTCCCCTGGCGCTTCGCTTTCCCTCCCTACGTAAGGCGGTTTTTTAC
AAATCGTGGCCGTTGAATTGAGAATTGTCTGGATTTGCGACAAGT
Found at i:76166 original size:17 final size:17
Alignment explanation
Indices: 76144--76187 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
76134 AACTCTCCTC
76144 TCCTCAAAGGCAGGAAT
1 TCCTCAAAGGCAGGAAT
76161 TCCTCAAAGGCAGGAAT
1 TCCTCAAAGGCAGGAAT
76178 TCCTCAAAGG
1 TCCTCAAAGG
76188 TATGTGCAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (17 bp):
TCCTCAAAGGCAGGAAT
Left flanking sequence: Indices 75644 -- 76143
GCAAAAAACGCGAACTGAAGGCGTAACTTCAAGTCGAATCTCATGACTAAATCCTGATTTCGAAT
CTGAAATAGAGCCTTCTGGGTTAGTACTGGCTTTGCCTCCAATTATTCGCGAGAAACAAACGAAT
TGCGCTTCCATCTCGACTTTATCTTTCCTAGGAAGTAAACCCTTAAAGCACGAATGGAAAAAGAA
CGGAACGAAATCTTCTTGTACCATATCAGGGGTATTCTTACCTCTCTCTAATGTTTGTTTGTTAC
CAAACCTTCGTTGTATCCAATAAGAATGAGATTCAAACATGGATTCGTTTTAGCCAAAAAGTCCT
CCACGGGAAGGGATTGTTACCCGAGGAAAAAAAAGGGCCGATTTCCAGAAGGAAGGTTGGTTGTT
TGGTGTGAACTTCTGCTTCGCGCAGCGAAGTGAAGGAATGGAATTCCCTTCCTCGGAACCCTTTT
CACAATAATCTTCCCTTCTTGCCCTTCTTGCCCGGAACTCTCCTC
Right flanking sequence: Indices 76188 -- 76687
TATGTGCAGAAGGGCCGAGCGCAGGGGAAGAGGTTAAGGAATTCGGTATTCCTCAATTCCTCAAA
AATCAATACACTGTTACCGGGTAAAAATCCCGGGTTGTATTACTGTTCCTAAAGATGCAGCCCGG
CGGGGCGGGTAAATCCCCCATCGATACGCTGTCTCTTAGCCTCCACCCGAGGCTGGCCCATCCCC
TCCCCTCGAGGGCAAACGGCCGGGCTGCGTCCTCGCATGCTGGGGTGTCCTAGGCCATGACCCGT
TAAAAGTTGTCGGGATCCGGGTGTGAACAAAAAAAGAGTGCGGCTGGCTGCTTTCGCAGGTATGT
GCAGAAGGGTGTAAGTTCTCCGGGGTAACTTCTGCGAGGTTCAGGTATGTGCAGAAGTTCTCCGA
GCGCAGGTGAATGGGAAGGGGCAGAAGGTTGTTTCAACCAACCTTCTGGCCGTTATTTCACCCAC
TCTCCCTGCCACCTCGCAGAAGTTACCCGGTGCTCGTTCAAGAAC
Found at i:80179 original size:23 final size:23
Alignment explanation
Indices: 80149--80194 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
80139 TTCCGATAGA
*
80149 GGACGAGT-AAGGGCTCAATAAAG
1 GGACGAGTAAAGAG-TCAATAAAG
80172 GGACGAGTAAAGAGTCAATAAAG
1 GGACGAGTAAAGAGTCAATAAAG
80195 AGACTGACGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.43, C:0.11, G:0.33, T:0.13
Consensus pattern (23 bp):
GGACGAGTAAAGAGTCAATAAAG
Left flanking sequence: Indices 79649 -- 80148
TTCGTGGTGATCGGCCCCTCAACGAAGCCTCTCTGTTAAATGGGCTTGTGACCGGTAAAGGGGAG
GGTAGCCTTGAGGAATGGTTGACAAATGATGGGATAAGAATAAGTCTCCGGTTGGATTTCCTTGA
ACTAAAGGGCGTAAAGCTCTAGCGTAATGCTGGCAGCCAGAGAGGGAGCTACGTGTCGGAAGCCC
GGGCTGCCAGGCCGACATGGAGCGGAAAGAGGGGCGCGTAACGAGCGTGCTAAAATAAGTGTGGG
TTTGTGGCCTATAAAAGAGAGAACCAAGTGAGGAGTGGCCAGTACCGGGGGGAAGGGCTCGGGTG
GTCAATACGGGATGACGTGGTTGTCCGGTCCACCAACTAATCCCTTTAATCCCTCTTGTCCACGA
CCCCCACGAGTGAAAGTAACGAGTGGCGAGCTCTTCCCCTCTAAGTAACGAGTGGCGATCGACTC
TAAGTAACGAGTAGCGTAGCCACGTAGTTCCTTGTTTCCGATAGA
Right flanking sequence: Indices 80195 -- 80694
AGACTGACGGGTAGTGAATAAAAGTAGAGCGTAGTGCCGGCTGCTCCGTTGGTTCACGGCACGAG
CTCGTTCTGCCCGGTCCTAGGCGAATCGATTCCCGTTCCGAAAAGAGAAAAGAGACGAGGGAGCG
TAGTGCCAGCTGGCCCGTGAATGGGCGTAGTGTCGGATGCCACTGCCGGGATGGCAGGGCGACAA
GAATCCCAAGGAGGTACACGGCACGAGCGTCGTCCTCAACTCCGGGAGTTAAAAGGAAAATAAGC
AAACACACGTCCATGAGTGCTTGCCACTTTTTATAGTGGCGCGGGGCCGGGCAAACTGTTGATTC
GTGCAAAGAATCCCGCTGCGCTCAGAACAACACACAAACTTTCTTGGTCCAAAAAAAATAAACTT
CTGCCAGAAGGTTGGTTGTTTGGGGTGAGGCCCTGCCAAAAATGGCCGGAGAACCCCTGCCACCT
CGCAGAAGTTACCCCTGCGCTCGGTCAAGAACTTCCAACCTTTTC
Found at i:81045 original size:14 final size:14
Alignment explanation
Indices: 81026--81055 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
81016 CGGAGAACCA
81026 GCCAACAACCTTTT
1 GCCAACAACCTTTT
81040 GCCAACAACCTTTT
1 GCCAACAACCTTTT
81054 GC
1 GC
81056 TGGCCCGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.37, G:0.10, T:0.27
Consensus pattern (14 bp):
GCCAACAACCTTTT
Left flanking sequence: Indices 80526 -- 81025
AGAATCCCGCTGCGCTCAGAACAACACACAAACTTTCTTGGTCCAAAAAAAATAAACTTCTGCCA
GAAGGTTGGTTGTTTGGGGTGAGGCCCTGCCAAAAATGGCCGGAGAACCCCTGCCACCTCGCAGA
AGTTACCCCTGCGCTCGGTCAAGAACTTCCAACCTTTTCCCCTGCGTTGGCAGAAGTTCTTTTCC
CGCTGCGCTCAGAAGAAACTTCTGCAACCTTTTTGGTTGTGAACCTGACAGATTTCCTACAAAAA
AAGAGTGCGGTTGGTGCAGGTGAACTCTTTGGGCTGGGCAAAAGTTGCTTGCGAAGGCACGGATT
TAAAGGGATCCGAGTTGTCGGGATCCAAGGACCCACTCTCCCTCCTATCTGCACTCATTCGAAAG
CTGTGTAAAAGGTTGGTTGTTTTTCCCCCGTGCCTACCTTTGTAAGCGAATGAGTGAACGGCCAA
GCCCCAAAAAGTTGCCGTGCCTTCACGTAGCTGCGCGGAGAACCA
Right flanking sequence: Indices 81056 -- 81555
TGGCCCGCAGAAGTTGGTTTCTGCGCTCAGATTCAACACGAAGGTTTGCCAACTTTTAAGCAGGC
AGAAGTCCTACGCGAAGAACCAGCCAACCAACCGGTCCGGTCAACCCTTCTTGGTCCTTTGTAAG
CGAAACAACCTTTTCGGCCACGGTTGGGGGAAGGCCCTTCCCCTCCCCAAAGGTTTAAACAAAAG
AATCTGAGCGCAGCGGTGAAGGGGAAGCAAAAGTTGCTTGCTTGCGTGCGGGTTCACGGCAACTT
TTACGGGGGCCTTCTGCAAGCAAGCAACAAACAACCTTTTCCCCTGCAAGCAAGAAGTTTGTCGC
TTACAAAGAAACCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCGGTGAAGGGGAAGCAAAAGTTG
GTTGCTTGCGAGGGGCACGGATAGCAACAAACAACCTGGCCTTCCCCCGAGAACCCCTGCGCACT
CATTCGAATGAAAGCAAAACAGTTGTCGTGAGATCCAAGTTGTCC
Found at i:82871 original size:4 final size:4
Alignment explanation
Indices: 82862--82926 Score: 130
Period size: 4 Copynumber: 16.2 Consensus size: 4
82852 CGACAAACTT
82862 CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG
1 CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG CTTG
82910 CTTG CTTG CTTG CTTG C
1 CTTG CTTG CTTG CTTG C
82927 AGGGGAAAAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 61 1.00
ACGTcount: A:0.00, C:0.26, G:0.25, T:0.49
Consensus pattern (4 bp):
CTTG
Left flanking sequence: Indices 82362 -- 82861
GGAGAACCAACCTTCTGGAGGCAGAAGAAACTTCTGCTTCGCGTAGCGAAGAACCAGCCAACCAA
CCTTCTGGAGGTCCGGTCCTTCTTGGTCCTTGGATCCCGACTTGCCACACTTGCCAGAAGTGGAC
CGGATTAACAGTTTGCACGAAACTTTTCGGCATAAGGTTGTTTGTTGCTTGCTTGCAGAAGGTTC
TTTCCCCTGCAACCCCCGTGCCAGCCTACCTTTGAAAGCTCTTTTTGGGCGGGTTGTTGTTTCGA
AGAATGAGTGCGCAGGGGGGGTTGTTTGTTGCTATCCGTGCCTACCTTTGTGAGCGTGATAAAAG
TGTGGCAAGAAACTAACTGCCTTTTCGTGCAGAAGGGTTGTTGAACCCAGAAGGGGTTATCCGTG
CCTACCTTTGGGCCCCAAGAAGTGGCCGAAAAGTTAGTTTCTTGCCAGGCACCACTTTATAACGA
AAAGTTTCGCTTACAAAGGTTTAAACCTCTGTAAGCGACAAACTT
Right flanking sequence: Indices 82927 -- 83426
AGGGGAAAAGGTTGTTTGTTGCTTGCTTGCAGAAGGCTCTTTCCCCCGTGCCGTGCCTGGCACGG
GGGAAAGCTGCGCTCAGAACTTTTGGTCGTCCCCCGGTAGCTGCGCTCAGAAAGCGCTTTTGGTT
CAAAGCAGAAGTCGGTAGCTGCGAAAACAAACAAACTTCTGTAATCTTTTTCGGATCGGAATACT
TGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGGCAGAAGTCTCTTCTGCCCCGCTGCGCGAAGAT
TCAACCTTCTTGTTCTAACTTTCTTGGTCCGTGTGCAGAAGGGTTGCAAAAGGTTGTTGGTTGTT
TGTTTTGTTGAAACTTCTGCTGCGCGAAGCAGAAGTTTCTTCCCTTTCTTGGTCCGTGTGCAGAA
GGGTTGCAAAAGGTTGTTGGTTGTTTGTTTTGTTGAAACTTCTGCTGCGCGAAGAAAGCGCGCGC
TTTTTGCAGAAGAAACTAACTTCTTGGTTCCAACTTGCTTGCTCT
Found at i:83310 original size:90 final size:90
Alignment explanation
Indices: 83205--83370 Score: 332
Period size: 90 Copynumber: 1.8 Consensus size: 90
83195 CTTGTTCTAA
83205 CTTTCTTGGTCCGTGTGCAGAAGGGTTGCAAAAGGTTGTTGGTTGTTTGTTTTGTTGAAACTTCT
1 CTTTCTTGGTCCGTGTGCAGAAGGGTTGCAAAAGGTTGTTGGTTGTTTGTTTTGTTGAAACTTCT
83270 GCTGCGCGAAGCAGAAGTTTCTTCC
66 GCTGCGCGAAGCAGAAGTTTCTTCC
83295 CTTTCTTGGTCCGTGTGCAGAAGGGTTGCAAAAGGTTGTTGGTTGTTTGTTTTGTTGAAACTTCT
1 CTTTCTTGGTCCGTGTGCAGAAGGGTTGCAAAAGGTTGTTGGTTGTTTGTTTTGTTGAAACTTCT
83360 GCTGCGCGAAG
66 GCTGCGCGAAG
83371 AAAGCGCGCG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 76 1.00
ACGTcount: A:0.16, C:0.16, G:0.30, T:0.38
Consensus pattern (90 bp):
CTTTCTTGGTCCGTGTGCAGAAGGGTTGCAAAAGGTTGTTGGTTGTTTGTTTTGTTGAAACTTCT
GCTGCGCGAAGCAGAAGTTTCTTCC
Left flanking sequence: Indices 82705 -- 83204
GCCTTTTCGTGCAGAAGGGTTGTTGAACCCAGAAGGGGTTATCCGTGCCTACCTTTGGGCCCCAA
GAAGTGGCCGAAAAGTTAGTTTCTTGCCAGGCACCACTTTATAACGAAAAGTTTCGCTTACAAAG
GTTTAAACCTCTGTAAGCGACAAACTTCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCAGGGGAAAAGGTTGTTTGTTGCTTGCTTGCAGAAGGCT
CTTTCCCCCGTGCCGTGCCTGGCACGGGGGAAAGCTGCGCTCAGAACTTTTGGTCGTCCCCCGGT
AGCTGCGCTCAGAAAGCGCTTTTGGTTCAAAGCAGAAGTCGGTAGCTGCGAAAACAAACAAACTT
CTGTAATCTTTTTCGGATCGGAATACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGTTGGCAGAA
GTCTCTTCTGCCCCGCTGCGCGAAGATTCAACCTTCTTGTTCTAA
Right flanking sequence: Indices 83371 -- 83870
AAAGCGCGCGCTTTTTGCAGAAGAAACTAACTTCTTGGTTCCAACTTGCTTGCTCTCTTTAAAGT
GTGCAGAAGGTTGTTTGTTTTGTTGAAACTTCTGCTGCGCGAAGCAGAAGAACTTCTTTGATCCA
ACTTGCTTTCTTTAAAGTGTGCAGAAGTTCTGCGCGAAGAAAGCGCGCGCTTTTTGCAGAAGAAA
CTAACTTCTTGGTCCAACTTTCTTGCTTTCTTTAAAGTGTGCAGAAGAATTGTTTGGCAGAAGTT
CTGCGCTCAGATTCTTTTGTTCACACCTTTGGGGTGGGCCCTTCCCGTGGCCGAAAAGCCCCATT
CGCTTCGCTGCGCGAAGCAGAAGTTCTAACAACTTATGCGTCCAACTGCCTTTAAAGTGTGCAGA
AGAACTTCTGCAGTTCTTCTGCGAAATCTTGGCTTGGCAGAAGTTGCTTTCAAACAACCAGAAGG
TCACCTGCCTGCTTTTTGGAGTGGAATACTCTTTCTTTAAAGTGT
Found at i:84808 original size:5 final size:5
Alignment explanation
Indices: 84798--84859 Score: 97
Period size: 5 Copynumber: 12.4 Consensus size: 5
84788 CTGCGCGCTT
* *
84798 CTCCC CTCCC CTCCC CTCCC CGCCC CTCCC CTCCC CGCCC CTCCC CTCCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC
*
84848 CTCCC CGCCC CT
1 CTCCC CTCCC CT
84860 GCGGGGTCGG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.00, C:0.79, G:0.05, T:0.16
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 84298 -- 84797
GTGGCACGTGGACTTTTGCGCGCGCGCAAAGAAAGAATGAGTGCCACGGCACGGATAGCAACCCC
TGCGCACGAAAAGCTAGCTTCAGTGGCACGAAACAACAACCCGCCCAAAAAGAGCTTTCAAAGGT
AGGCTGGCACGGGGGTTGCAGGGGAAAGAACCTTCTGCAAGCAAGCAACAAACAACCTTCTGCCG
AAAAGTCTCTTGCTTGCCAGCTTACAAAGGCACGGATTATTACAAAGGTAGGCACGGATTAACAA
CAGTTTGCACTACCGGCTTTAAATCCGTGCCTTCGCAAGCAACTTTTGCCCAGCCGTTCACCTGC
TTGGAGAAACCAACACGCAACCCGCACTCTTTTTTTGTAGGAAATCTGTCCGGTGGCCAACAAAA
ACCTCTCATTGGCCCTCATTCGCTTACAAAGGTAGGCTTGCACGGATCCCCTTTAAATTCGTGCC
ACAGTGGCCCTCATTGGCACTCAGTTGAAGCGCTTCTGCGCGCTT
Right flanking sequence: Indices 84860 -- 85359
GCGGGGTCGGGATCCAAGTTGTCCCACAACTGTTTTTTTTGCCCAAACTCCAACAACCTTCTGCC
TCAAAATACAGTTGTCGGGATCCAAGTTTGTAGAGTCGGGATCCAAGGACCCACTCTCCGCAGAA
GGGTGTTCTCGCGGTGCTCGGTCAAGAACTTCCAACCTTTTCCCCTGCGTTGGCAGAAGTTCTCT
TCCCCTGCGCTCGGTCAAGAACTCCCAAACAACCTTCTGCCGAAAAGAAAAAGTTGTTTTGGCAA
ATCTCCCAAACTACAACTGAACTGTTTATCTGCCTGCCGAAAAGGGTTGTTGTTTCGAAGTGGCA
CTTTTAGAAGGTTTGTTGAAGTCGGGAGGTTTGCGGGTCTTGGATCCCGACAACTGTATTTTTGG
CAACCTGGCAAATACAGTTGTCGGGATCCAAGGATTTCCAAAAGCGCTTTCTGAGCGCAGCTTTC
CCCCGTGCCAGGGGAAGACCTCCATCTTCGCGCAGCGGGGAAAAG
Found at i:87746 original size:5 final size:5
Alignment explanation
Indices: 87736--87790 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
87726 GAACCAAAAA
87736 GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC
1 GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC GGGGC
87786 GGGGC
1 GGGGC
87791 ACCTCCTACT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.00, C:0.20, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGC
Left flanking sequence: Indices 87236 -- 87735
GTTGGTTGGCTGGTTCTTCGCGTAGGACTTCTGCCTGCTTAAAAGTTGGCAAACCTTCGTGTTGA
ACCTGAGCGCAGGGGAATAAGTTCAGGTAGGCACGGGGGCCCGGCCGTTGCACTTCGTGATAAAA
GTGCCACTACGACACGAGTGCCACTTTTTATAGTGGCACTCCTTGGATCCCTATGAGTGCCTTAA
AAGTTGCTTCATTCGTGTAAAAGGGCTGGCTTTGAGCCCAAAAGCGCTCTTCCCCCAGGAAGTCG
GGAGAGTGGGACAACTTGGATCCCTACTTTTTAAACGAATGAGTGCCACTTCGAATGAGGGGGTT
CCAGAGGTGGCAGGAGTTTGGAAGTTCTTGACCGAGCGCAGGGGTTTTCCCCTCCGAGCAGAAGT
TCTTCTGCGGGGGAAAGAGTGGGTGAAAGCAGAAGAACTCCTGCCACCCTCTTATATTCCTCTGA
AGTTTGTGGGGAAACCCCTGCGCTCAGACTTTTTTGAACCAAAAA
Right flanking sequence: Indices 87791 -- 88290
ACCTCCTACTTTTTTTTAACTTCGTGCCACTTTTAAAGAATGAGGGCAACCGGTTGGTTGTTGTT
TTTCCCCCGTGCCTACCTTTGTGAACGTGTGGCAAGGGGGAACTTTTTTGCGGCAAACTGTTTGT
GCCACTTCAATTAAAAGTGCGGGCCCCCGTGCCTTCGCTTCGCTGCGCGAAGATTCAATACGCAA
GCAAACCTTCTTGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGT
CCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGTCCGGT
CCGGTCCGGTCCGGTCCAAAAGGGTGTGAAGAGCTAAAAAATCCCCTTCCCCTGCGAAACCGGCA
CTCTTTTTTTGTAGGAAATCTGTCCGGTTCACACAAAAAAAGAGTGCAAATAAGGGGTGTTGTGT
TGTTCGCAGCGAAGCGAAGGAAACTTTTCGGCTCGGCAGAAGTTG
Found at i:88008 original size:5 final size:5
Alignment explanation
Indices: 87998--88132 Score: 270
Period size: 5 Copynumber: 27.0 Consensus size: 5
87988 AAACCTTCTT
87998 GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC
1 GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC
88048 GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC
1 GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC
88098 GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC
1 GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC GGTCC
88133 AAAAGGGTGT
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 130 1.00
ACGTcount: A:0.00, C:0.40, G:0.40, T:0.20
Consensus pattern (5 bp):
GGTCC
Left flanking sequence: Indices 87498 -- 87997
AGAGTGGGACAACTTGGATCCCTACTTTTTAAACGAATGAGTGCCACTTCGAATGAGGGGGTTCC
AGAGGTGGCAGGAGTTTGGAAGTTCTTGACCGAGCGCAGGGGTTTTCCCCTCCGAGCAGAAGTTC
TTCTGCGGGGGAAAGAGTGGGTGAAAGCAGAAGAACTCCTGCCACCCTCTTATATTCCTCTGAAG
TTTGTGGGGAAACCCCTGCGCTCAGACTTTTTTGAACCAAAAAGGGGCGGGGCGGGGCGGGGCGG
GGCGGGGCGGGGCGGGGCGGGGCGGGGCGGGGCACCTCCTACTTTTTTTTAACTTCGTGCCACTT
TTAAAGAATGAGGGCAACCGGTTGGTTGTTGTTTTTCCCCCGTGCCTACCTTTGTGAACGTGTGG
CAAGGGGGAACTTTTTTGCGGCAAACTGTTTGTGCCACTTCAATTAAAAGTGCGGGCCCCCGTGC
CTTCGCTTCGCTGCGCGAAGATTCAATACGCAAGCAAACCTTCTT
Right flanking sequence: Indices 88133 -- 88632
AAAAGGGTGTGAAGAGCTAAAAAATCCCCTTCCCCTGCGAAACCGGCACTCTTTTTTTGTAGGAA
ATCTGTCCGGTTCACACAAAAAAAGAGTGCAAATAAGGGGTGTTGTGTTGTTCGCAGCGAAGCGA
AGGAAACTTTTCGGCTCGGCAGAAGTTGCTTGCTTGCTTGCTTGCTTTTCGTGCGCAGGGGAAAA
GTTGCTATTCGTGCTAACCACTTTTAATGGCAAGAAACTAACTTTTCGTGCAGAAGTTGGTTCCA
AGGAGTGCCACTTCTTGGGGGAAGGCCCTGGAACCAAAGGTAGGCACGGCAGAAGTTTGCCACAA
ACAACCAACCTTTTACACTTCGTGATAAAAGTGTGGCAAGAAACTAACTGCCTTTTCGTGCAAAA
GAAAGCCTCATCCGAAACAACCATAAAAGGTTCTGGTTGAGAGTTCGGCCCAAAAAGAGCTTTCA
AAGGTAGGCACGGGGGGAGGGCCTTCTGCAAGCAAGCAACTTCTG
Found at i:93390 original size:16 final size:17
Alignment explanation
Indices: 93369--93400 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
93359 TTCGCTGCGA
93369 AACC-AACTTTTAACCC
1 AACCAAACTTTTAACCC
93385 AACCAAACTTTTAACC
1 AACCAAACTTTTAACC
93401 AAACAACCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (17 bp):
AACCAAACTTTTAACCC
Left flanking sequence: Indices 92869 -- 93368
AGGCCACTTGCCGAAGTGGCACTCCTTGGATCCGGTGGCTTCGAAACTTTTCGTGCAGAAGTTGG
TTTGGGCCAAGCCCCAAAAAGAACTCAAAAGTTGCCTTCCCCCGCTGCGAAAAACAACCCGCACT
CTTTTTTTGAAATCCGCAGAAGAAACTAACTTCTTGGTTCCGTTCCAAAAAGTGTGCAGAAGAAT
TGTTTGGCAGCAGAAGTCTGCTGCGCTCAGCAGAAGTTCTTTCTAACCTTCTTGGTCCGGTCCAA
AAAGTGTGCAGAAGTCTCTTCGCTGCGCGAAGATTCAACAACCAACCAAAAGTGTGCAGAAGTCT
CTTCGCTGCGCGAAGATAGCTTTTTTGGAGATCCTGAAAGGAACCTTCGCAAGCAACCAACTTTT
GCTTCCCCTTCACCGCTGCGCTCAGATTCTTTTGTTCACACCTTTGTAAGCGAAACTTTTCGTGC
AGAAGGTTGTTGGGTTCTCCGTGCCTTCCCTTCGCTTCGCTGCGA
Right flanking sequence: Indices 93401 -- 93900
AAACAACCCGCAGGGTTGCACTCTTTTTTTTGAAATCCGCATAAGTTCTTCGCTGCGCGAAGCAG
AAGTTCCTTCTGGAGGCAGAAGTTCTTAGCTGCGCTCAGATTCAACACGCCAACAAGAACTTCGC
TACGCGAAGCAGAAGTTCCTTCTGGAGGTCCGGTCAACCCTTCTTGGTCCTTTGTAATCTGCGAA
ACAACCCTTCTGCACGTGCGGGTTGTTTCGCTTACAAAGGTAGGCTGGCACGGGGGAAAGAACCT
TCTGCAAGCAAGCAACAAACAACCTTCTGCACGAAAAGTTTCGCTTACAAAGGTAGGCACGGATT
GGGACGCCACTTTTACAAGCAGTTGAATCGGCCACTTGTTCCCCCACACGCTTACAAAGGTAGGC
ACGGATCTTTTTTCAGGCCCTCATTGGCACTCATAGCTTTGCCGTTAAAAGTTGTCGGGATCCAA
GGTTTAAACAAAAGAATCTGAGCGCAGCTTTCCCCCGTGCGGGGG
Found at i:94455 original size:12 final size:12
Alignment explanation
Indices: 94438--94467 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
94428 TTGGTTGTTG
94438 TTCTTCAGAAGT
1 TTCTTCAGAAGT
94450 TTCTTCAGAAGT
1 TTCTTCAGAAGT
94462 TTCTTC
1 TTCTTC
94468 TGCAAAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (12 bp):
TTCTTCAGAAGT
Left flanking sequence: Indices 93938 -- 94437
CTGCAAAAAAGAGTGCGGGTTGCAGAAGGGTGTTCTTTACCGAGCGCAGGGGTAACTTTTCCCCA
CAAACTTCAGAGGGATATAAGAGAGAGCAGAAGTTCACACAAACTTCTTGGGTTGCCTTCTGCGC
AGCTTTCCCCCGTGCGGGGGAAGAAGGAGAACCCTACAGGTTTTACGGATTTCCAAAAGTCCTGA
GCGCAGCTACCGTTAAGGAACCACTCTCCCTCCTTCCCTCATTCCTTACAAAGGTAGGCACGGAT
CCCCGAAAAAGTTATCCGTGCCTTCGCAAGCAACTTTTGCCCAGCCCAGCCCAGCCCAAAAAGTT
CACCTGCACCAACCGCACTCTTTTTTTGAAATCTGTCCTGTCCTAAAAGGTGTTAAAAGTTGTCG
GGATCCAAGGACCAAGAAGGTGTGCAGCGGGAACAACCCTTCTGGTTGCTTCGCGCAGCAGAAGA
ACAACAACAACCAACAACCAACAATTGGTTGTTGGTTGGTTGTTG
Right flanking sequence: Indices 94468 -- 94967
TGCAAAATTGGCAAGCAAGCTGTTGGGCCGGGTTGTTTGTGCGCAGCGGGAACAACCCTTCTGGT
TGCTTCGCGCAGCTACGCAGAAGTTCACACCTTCTGCGACGGATTTCCAAAAGCAGAAGCAGAAG
TTTTCGCAGGGGTTTCCCCACAAACAACCTGAAGAGGGATATAAGAGGGTGGCAGGAGTTAGTTC
TTCTGCACACTTTACAAAGTGTGGTGTTCTTTACGGATTTCCAAAAGCAGAAGTCTGAGCGCAGC
TTTCCCCCGTGCGGGGGAAGAAGGAGAACCCTACAGGTTTGACGGATTTCCTGCAATCTGAGCGC
AGCGAAGTGACTTCTGCACACTTTGTGTGGTGTTGGATTTCCTGCCAAAGAGTGCGGGTTGTTTT
TCGCAGCGAAGAACTTTGAACCACTCTCCCTCCTTCCCTTAACCTCTTCCCCTGCGCTCGGTCAA
GGCACATACCTCATTGGCCCTCAGACCCCCTCCCCACCCGGCTAG
Found at i:95332 original size:5 final size:5
Alignment explanation
Indices: 95324--95348 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
95314 AGCAAAAGAT
95324 TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC
95349 GGAGAACCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 94824 -- 95323
GTTGGATTTCCTGCCAAAGAGTGCGGGTTGTTTTTCGCAGCGAAGAACTTTGAACCACTCTCCCT
CCTTCCCTTAACCTCTTCCCCTGCGCTCGGTCAAGGCACATACCTCATTGGCCCTCAGACCCCCT
CCCCACCCGGCTAGCACGGGTCCGAGGGGTTACCCGGGACGTGACGGGGCCTTCCCCGCCCTTCC
CCAGAGTGGACTTCGTCCCCGTTTTGCCCCCTGCCGAGTAAACCCCACCCCCTCCTGGCAAGGGG
GGAAGACCCCACTAAACTTCCACCGACCCCCGTGGGCTTTGTCCCCCTCGCCCCTAAACCTTCGC
AAGCAACTTTTGCTTCCCCTTCACCGCTGCGCTCAGCAATCAATCTTTTTCGGACGGATTTCCGG
GGCTTGCTTGCTCTTTGGACGTAGAAGGGTTGTTTGTGTGAACTTCTGCTCCTTCCCCTGCGCTC
AGCCATTTTTTTCGGATTTCCGGGACTTTTTGCAAAGCAAAAGAT
Right flanking sequence: Indices 95349 -- 95848
GGAGAACCCCTGCGCTCAGACTTATGCTTTTGGAAGCAGAAGTCTCTTCGCTGCGCTCAGAACTT
AAAGAACTTCTGCAGTGCGGATTTCCTTTGAAAAAAGGGGGAGTGGACTTTAAAAAGTACCCCCG
TATCTCTTTATCCCAAAACTGGCTTGCTGGTAGAAGGCTGGCTGTTTGTGGCTAGCCCGAAGATA
ACGGGCGTAGCGGTCCTAACCGCCACCCACCCTTCAGGGTGTCCGATCTCTCGTACTTCCTCCGC
ATATATAGTGTGCCCTTTGATTGAGTGCCCCAAACGCACACCCCTGCCAAGGCGGGTTCGGCGCT
GGAAGTTGGCCCCCCCGCTACTATATCCTGCTGCTTGGAAAATAAATCCTGCGGAGGCAGGAGGT
TGTTTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTGCGAGAACTTACACCCTTCTGCCTTCTG
CCTTCTGCAACTGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCTT
Found at i:98309 original size:5 final size:5
Alignment explanation
Indices: 98299--98371 Score: 130
Period size: 5 Copynumber: 14.6 Consensus size: 5
98289 GCCTCCCGAG
98299 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGG-A GGGAAA GGGAA
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGG-AA GGGAA
98349 GGGAA GGGAA GGGAA GGGAA GGG
1 GGGAA GGGAA GGGAA GGGAA GGG
98372 CCCCCCCCTG
Statistics
Matches: 66, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.06
5 58 0.88
6 4 0.06
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (5 bp):
GGGAA
Left flanking sequence: Indices 97799 -- 98298
GGGTTGGCCATTGAATTTACTCGGCGGGAGGGGGAACCCGGTGGAATGGCCCGTTTAGGGCCGGG
CGACGGGTTCCCCCCGGGAGCGAGTAGGGGGGGTACCCGGGAGGGCTTTAGCTATCGATCGTACA
TAGAGAATATTTCGTAAAGGCGGAGATCATGACCAGCGATCTTATTAAATACTCTAGCTGTCGTA
CCCAGTTTAAACTTGGCTGCATACATCCCGGCTAGGGGCATTCGGAATACGAAGGACATTAAATA
GCTGATATTACGTATTCCTTGGATCCGGCGTATTTGTACCACTCCGGCAGGCCTCTGAGATTTAT
TTCAGGACTTTCTCGGTTTAGGCAACCGCCTTCTCGTGGTAAACTTATAAAACTGAAGCGGGGTC
CGAAAGTTTGTTTGGGGAAAGCCGGTTGAAGGGAGGCCGGAGGCCCGTATTTCGAACCTTTCCCA
TACTCCCATACCGCATTCCCCACTTTGAACTTTATGCCTCCCGAG
Right flanking sequence: Indices 98372 -- 98871
CCCCCCCCTGTCGGGGGTACCCCTCTCTAACTATCCTTTGTGCCGGGGGTCGAGAGTACCTAAAC
TTGGGGCGGGAGTGAGATCTCTTCTCTTTGCACGCACACGCCAATCTTGGTTGGCTGGCTTTTAC
CCAGTCCGGATTGGGTTGATAACTTCCCCGTCTCGGATGGTTTTTGTGGGATGCTGTACAATACA
CTACAGTTCATCATCGCGACCCAAGTCACCACCCTGCACTAACCATTGGCTTGATGAAAGGTGCT
CCTGATGATGCGTAGGGCTCCATGTGGACCTATCAAAGGTCCGGAACCGTCGGGGGCAATGACGG
CGTCTCCTAAAAGCAAGCCTCTAGCTCGAGGTTGTTTATTGTGCCGTCAATGGCCTCCCCATCGG
CAAAAGGGGGGGGAGGGCAAAACGGGTGTCCACAATCCCGTATTTCAGCTGAGTTTTTGGTAGGC
AGTAATCTATGAAGACTATGTTACACAGCCGGTAATAATAAAGCT
Found at i:100482 original size:12 final size:12
Alignment explanation
Indices: 100457--100496 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
100447 TAGAAGGTTG
*
100457 TTGGTTGGTGTGT
1 TTGGTT-GTTTGT
100470 TTGGTTGTTTGT
1 TTGGTTGTTTGT
*
100482 TTGGTTGGTTGT
1 TTGGTTGTTTGT
100494 TTG
1 TTG
100497 AAAGCAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 19 0.76
13 6 0.24
ACGTcount: A:0.00, C:0.00, G:0.40, T:0.60
Consensus pattern (12 bp):
TTGGTTGTTTGT
Left flanking sequence: Indices 99957 -- 100456
GAGAGACACGATAACGAACTCGGATCCCCGACCCAGTAAAGCCCCAGGGGGAACCACTCTCCCAC
ATGCCCCCGGAAAACTATTCCTCTGAGGGGAAGAGGCCGGCGGGACTCCTTGGATCTCCTTCCCC
GGCAAAGTCGGGATAAAACCAAGGACTTGCCCCCTCTCGCCGGGATAATAAATGGAGAGCTATCC
CGCACTCTGAGGAGGAAAGTATGAGGGCCAGAAGGTTGCTATTCGTGCTCCCAGGAAGTCGGGAG
AGTGGGACAAAAGGCCTTCGCAAGCCAACAAGTAAGTTCCCGCTGCGCTCAGAAGAGACTTCTGC
TTGCTTTTTGGAGGTCCAAAAAAAAAGTGTGCAGAAGGTTGGTTGTTTGTTTGTTTTGTTGAAAC
TTCTGCTTTTCCCCGCTTCGCTCAGAAGAGACTTCTGCTTGCTTTTTGGAAGCAGAAGTTCAAAA
AGTGTGGGTTGGGTTGTTTGCAGGCAGTTTGGACGTAGAAGGTTG
Right flanking sequence: Indices 100497 -- 100996
AAAGCAGAAGTTTCTCTTCCCCGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGA
GAACCCCTGCGCGAAGCAACCTTTTCCCGCTGCACACCGGAAGTTCTTCTGCCTGCTTTTTGGAC
GGGGCTGCGAAATGCAGAAACTTCTGCTTGCTTTTTGGAGGTCCAAAAAGTGTGCAGAAGAACTT
CTGCAAACCCCGCTGCGCGAAGATGGAGGTCTTCCCCGGTAGCTGCGCTCAGATTCAACCTTCTG
CACACCTTGGATCCCTACTTTTTAAACGCGATTGAATTCGTGCAATAGGGAAGGAGGGAGAGTGG
TTCCTTGGATCCCGACAACTGTTTCCATCCGTGCCTTCGCAAGCAACTTTTGCCCAGCCGTTCAC
CGAGAAACCGTATCTTTTTGTAGGAAATCTGTCCGGTTCACACCTACAAAACAAAAAGATACGGT
TTCTCGGTGAACGGCTGGGCAAAAGTTGCTTGCGAAGGTTCACAC
Found at i:100529 original size:5 final size:5
Alignment explanation
Indices: 100519--100560 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
100509 TCTCTTCCCC
100519 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GG
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GG
100561 AGAACCCCTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 100019 -- 100518
CACATGCCCCCGGAAAACTATTCCTCTGAGGGGAAGAGGCCGGCGGGACTCCTTGGATCTCCTTC
CCCGGCAAAGTCGGGATAAAACCAAGGACTTGCCCCCTCTCGCCGGGATAATAAATGGAGAGCTA
TCCCGCACTCTGAGGAGGAAAGTATGAGGGCCAGAAGGTTGCTATTCGTGCTCCCAGGAAGTCGG
GAGAGTGGGACAAAAGGCCTTCGCAAGCCAACAAGTAAGTTCCCGCTGCGCTCAGAAGAGACTTC
TGCTTGCTTTTTGGAGGTCCAAAAAAAAAGTGTGCAGAAGGTTGGTTGTTTGTTTGTTTTGTTGA
AACTTCTGCTTTTCCCCGCTTCGCTCAGAAGAGACTTCTGCTTGCTTTTTGGAAGCAGAAGTTCA
AAAAGTGTGGGTTGGGTTGTTTGCAGGCAGTTTGGACGTAGAAGGTTGTTGGTTGGTGTGTTTGG
TTGTTTGTTTGGTTGGTTGTTTGAAAGCAGAAGTTTCTCTTCCCC
Right flanking sequence: Indices 100561 -- 101060
AGAACCCCTGCGCGAAGCAACCTTTTCCCGCTGCACACCGGAAGTTCTTCTGCCTGCTTTTTGGA
CGGGGCTGCGAAATGCAGAAACTTCTGCTTGCTTTTTGGAGGTCCAAAAAGTGTGCAGAAGAACT
TCTGCAAACCCCGCTGCGCGAAGATGGAGGTCTTCCCCGGTAGCTGCGCTCAGATTCAACCTTCT
GCACACCTTGGATCCCTACTTTTTAAACGCGATTGAATTCGTGCAATAGGGAAGGAGGGAGAGTG
GTTCCTTGGATCCCGACAACTGTTTCCATCCGTGCCTTCGCAAGCAACTTTTGCCCAGCCGTTCA
CCGAGAAACCGTATCTTTTTGTAGGAAATCTGTCCGGTTCACACCTACAAAACAAAAAGATACGG
TTTCTCGGTGAACGGCTGGGCAAAAGTTGCTTGCGAAGGTTCACACCTTACCCCGTGCCAGCCAA
AAAAACCTGAGCGCAGAAACCAACTTCTGCAACAAACAACCCGGA
Found at i:103598 original size:20 final size:21
Alignment explanation
Indices: 103575--103621 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 21
103565 ATCTATCTAC
103575 CTATCTATATCTAGATATA-T
1 CTATCTATATCTAGATATAGT
103595 CTATC--TATCTAGATATAGGT
1 CTATCTATATCTAGATATA-GT
103615 CTATCTA
1 CTATCTA
103622 GGTAGATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 12 0.52
20 11 0.48
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.43
Consensus pattern (21 bp):
CTATCTATATCTAGATATAGT
Left flanking sequence: Indices 103075 -- 103574
CTGTGACGTTTGGAGTTGTCGTTTGTGCACCTGTCCCCAATGGAATGAGTAATCCACTCCCCTGC
CCATGGCCGCCCGCACTCAGTCTCGATGGCTGCTGGCGGGGAGTGCAGCTTACGTTCGCGCGTTT
CCCTACTAAGTAGTAAAGTGTGCCGCTGTGGGAAGTATTGTTCCAAAAGGTACTCCGATTCGCCA
ATTCAGGCTCAACTCGCTTGACGTTAGCGGACTTGCATGATATTATCGGGCAATCTTCTGTATGG
GAGGCGGAGAGAATGCGTTAAGGACGGATTTCAAACCGGAAAGGTGTGCCGGTTTCGCAGCGGGA
ACTTATTGCGTGCGAAGGCGCGTTGCGAACTCTAAGTTTTTACTCTGAGCCTAGAGAACGCTATG
CATCTTACGGAGTAAACCGAGAGCCTTTTTATTGACCCAGCTCTTTATCGGATGAACAACCAACA
ATAGAGCGGGCGCATCTATCCATCTATATCTATCTATCTATCTAC
Right flanking sequence: Indices 103622 -- 104121
GGTAGATAGATGGATATAGATATAGATATAGATACATATACTCTCGAATATGGATACTGAATAAT
ATTAGATCTTTGTCCGTAGAGCCAGCGAAGTCCCTCTACCCCACTCACTTTAACCTCTCTGCCTT
TCGTGCCGGCAGGGAATGGAAAACGTATTTTCTTACCCGAGGCCCCGCATCCAGCGCAAGTACTT
TATGCTAAAGCCGATCAAGCTTTTCCCCTGCGACATGCTATGTTTTCTACCCCATCGCTGGGGGG
GTTGATGAGTCTAAGCCCGGCACACATGTTTTGGCAAAACTTGTGTGTTTATAACCATAGGTGAC
TGTTAGGCCGCCCGACTAAACATACCAATAGTGACGAAATTCATATGAGCTACTGAAGAATAGGC
AATAATCTTCTTCGGATCGATTTGTCTTATGGTAGTCAAGGAAGTATATGGAATAGCAATCACGC
TTGAAGTATGAATGAGGGGAGTGAAATAAAGTGTCGCTTCGGGAA
Found at i:103619 original size:24 final size:24
Alignment explanation
Indices: 103565--103621 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
103555 ATATCTATCT
* *
103565 ATCTATCTACCTATCTATATCTAG
1 ATCTATCTACCTATCTAGATATAG
* *
103589 ATATATCTATCTATCTAGATATAG
1 ATCTATCTACCTATCTAGATATAG
*
103613 GTCTATCTA
1 ATCTATCTA
103622 GGTAGATAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (24 bp):
ATCTATCTACCTATCTAGATATAG
Left flanking sequence: Indices 103065 -- 103564
CACCTATAGGCTGTGACGTTTGGAGTTGTCGTTTGTGCACCTGTCCCCAATGGAATGAGTAATCC
ACTCCCCTGCCCATGGCCGCCCGCACTCAGTCTCGATGGCTGCTGGCGGGGAGTGCAGCTTACGT
TCGCGCGTTTCCCTACTAAGTAGTAAAGTGTGCCGCTGTGGGAAGTATTGTTCCAAAAGGTACTC
CGATTCGCCAATTCAGGCTCAACTCGCTTGACGTTAGCGGACTTGCATGATATTATCGGGCAATC
TTCTGTATGGGAGGCGGAGAGAATGCGTTAAGGACGGATTTCAAACCGGAAAGGTGTGCCGGTTT
CGCAGCGGGAACTTATTGCGTGCGAAGGCGCGTTGCGAACTCTAAGTTTTTACTCTGAGCCTAGA
GAACGCTATGCATCTTACGGAGTAAACCGAGAGCCTTTTTATTGACCCAGCTCTTTATCGGATGA
ACAACCAACAATAGAGCGGGCGCATCTATCCATCTATATCTATCT
Right flanking sequence: Indices 103622 -- 104121
GGTAGATAGATGGATATAGATATAGATATAGATACATATACTCTCGAATATGGATACTGAATAAT
ATTAGATCTTTGTCCGTAGAGCCAGCGAAGTCCCTCTACCCCACTCACTTTAACCTCTCTGCCTT
TCGTGCCGGCAGGGAATGGAAAACGTATTTTCTTACCCGAGGCCCCGCATCCAGCGCAAGTACTT
TATGCTAAAGCCGATCAAGCTTTTCCCCTGCGACATGCTATGTTTTCTACCCCATCGCTGGGGGG
GTTGATGAGTCTAAGCCCGGCACACATGTTTTGGCAAAACTTGTGTGTTTATAACCATAGGTGAC
TGTTAGGCCGCCCGACTAAACATACCAATAGTGACGAAATTCATATGAGCTACTGAAGAATAGGC
AATAATCTTCTTCGGATCGATTTGTCTTATGGTAGTCAAGGAAGTATATGGAATAGCAATCACGC
TTGAAGTATGAATGAGGGGAGTGAAATAAAGTGTCGCTTCGGGAA
Found at i:103621 original size:4 final size:4
Alignment explanation
Indices: 103543--103605 Score: 53
Period size: 4 Copynumber: 16.2 Consensus size: 4
103533 GAGCGGGCGC
* *
103543 ATCT ATCC ATCT A--T ATCT ATCT ATCT ATCT ACCT ATCT A--T ATCT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT
*
103587 AGATAT ATCT ATCT ATCT A
1 --ATCT ATCT ATCT ATCT A
103606 GATATAGGTC
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
2 4 0.09
4 40 0.85
6 3 0.06
ACGTcount: A:0.30, C:0.24, G:0.02, T:0.44
Consensus pattern (4 bp):
ATCT
Left flanking sequence: Indices 103043 -- 103542
CTTAGCTGAATCTCGCCGGTGTCACCTATAGGCTGTGACGTTTGGAGTTGTCGTTTGTGCACCTG
TCCCCAATGGAATGAGTAATCCACTCCCCTGCCCATGGCCGCCCGCACTCAGTCTCGATGGCTGC
TGGCGGGGAGTGCAGCTTACGTTCGCGCGTTTCCCTACTAAGTAGTAAAGTGTGCCGCTGTGGGA
AGTATTGTTCCAAAAGGTACTCCGATTCGCCAATTCAGGCTCAACTCGCTTGACGTTAGCGGACT
TGCATGATATTATCGGGCAATCTTCTGTATGGGAGGCGGAGAGAATGCGTTAAGGACGGATTTCA
AACCGGAAAGGTGTGCCGGTTTCGCAGCGGGAACTTATTGCGTGCGAAGGCGCGTTGCGAACTCT
AAGTTTTTACTCTGAGCCTAGAGAACGCTATGCATCTTACGGAGTAAACCGAGAGCCTTTTTATT
GACCCAGCTCTTTATCGGATGAACAACCAACAATAGAGCGGGCGC
Right flanking sequence: Indices 103606 -- 104105
GATATAGGTCTATCTAGGTAGATAGATGGATATAGATATAGATATAGATACATATACTCTCGAAT
ATGGATACTGAATAATATTAGATCTTTGTCCGTAGAGCCAGCGAAGTCCCTCTACCCCACTCACT
TTAACCTCTCTGCCTTTCGTGCCGGCAGGGAATGGAAAACGTATTTTCTTACCCGAGGCCCCGCA
TCCAGCGCAAGTACTTTATGCTAAAGCCGATCAAGCTTTTCCCCTGCGACATGCTATGTTTTCTA
CCCCATCGCTGGGGGGGTTGATGAGTCTAAGCCCGGCACACATGTTTTGGCAAAACTTGTGTGTT
TATAACCATAGGTGACTGTTAGGCCGCCCGACTAAACATACCAATAGTGACGAAATTCATATGAG
CTACTGAAGAATAGGCAATAATCTTCTTCGGATCGATTTGTCTTATGGTAGTCAAGGAAGTATAT
GGAATAGCAATCACGCTTGAAGTATGAATGAGGGGAGTGAAATAA
Found at i:103627 original size:20 final size:18
Alignment explanation
Indices: 103585--103629 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
103575 CTATCTATAT
*
103585 CTAGATATATCTATCTAT
1 CTAGATATATCTATCTAG
103603 CTAGATATAGGTCTATCTAG
1 CTAGATATA--TCTATCTAG
*
103623 GTAGATA
1 CTAGATA
103630 GATGGATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 9 0.39
20 14 0.61
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (18 bp):
CTAGATATATCTATCTAG
Left flanking sequence: Indices 103085 -- 103584
TGGAGTTGTCGTTTGTGCACCTGTCCCCAATGGAATGAGTAATCCACTCCCCTGCCCATGGCCGC
CCGCACTCAGTCTCGATGGCTGCTGGCGGGGAGTGCAGCTTACGTTCGCGCGTTTCCCTACTAAG
TAGTAAAGTGTGCCGCTGTGGGAAGTATTGTTCCAAAAGGTACTCCGATTCGCCAATTCAGGCTC
AACTCGCTTGACGTTAGCGGACTTGCATGATATTATCGGGCAATCTTCTGTATGGGAGGCGGAGA
GAATGCGTTAAGGACGGATTTCAAACCGGAAAGGTGTGCCGGTTTCGCAGCGGGAACTTATTGCG
TGCGAAGGCGCGTTGCGAACTCTAAGTTTTTACTCTGAGCCTAGAGAACGCTATGCATCTTACGG
AGTAAACCGAGAGCCTTTTTATTGACCCAGCTCTTTATCGGATGAACAACCAACAATAGAGCGGG
CGCATCTATCCATCTATATCTATCTATCTATCTACCTATCTATAT
Right flanking sequence: Indices 103630 -- 104129
GATGGATATAGATATAGATATAGATACATATACTCTCGAATATGGATACTGAATAATATTAGATC
TTTGTCCGTAGAGCCAGCGAAGTCCCTCTACCCCACTCACTTTAACCTCTCTGCCTTTCGTGCCG
GCAGGGAATGGAAAACGTATTTTCTTACCCGAGGCCCCGCATCCAGCGCAAGTACTTTATGCTAA
AGCCGATCAAGCTTTTCCCCTGCGACATGCTATGTTTTCTACCCCATCGCTGGGGGGGTTGATGA
GTCTAAGCCCGGCACACATGTTTTGGCAAAACTTGTGTGTTTATAACCATAGGTGACTGTTAGGC
CGCCCGACTAAACATACCAATAGTGACGAAATTCATATGAGCTACTGAAGAATAGGCAATAATCT
TCTTCGGATCGATTTGTCTTATGGTAGTCAAGGAAGTATATGGAATAGCAATCACGCTTGAAGTA
TGAATGAGGGGAGTGAAATAAAGTGTCGCTTCGGGAAACATGGGT
Found at i:105510 original size:6 final size:6
Alignment explanation
Indices: 105501--105559 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
105491 ATACATAGTT
** * ** *
105501 ATATAG ATATAG ATATAG ATATCT AGATAG ATATAG ATATCT AGATAG
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG
*
105549 ATATGG ATATA
1 ATATAG ATATA
105560 TGTATTGTCT
Statistics
Matches: 39, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.46, C:0.03, G:0.17, T:0.34
Consensus pattern (6 bp):
ATATAG
Left flanking sequence: Indices 105001 -- 105500
TCGCACCCTCCTCTGACAGCACTACCCACGGAGAACGAACGCTCCGCCGGGGAGAGAGTCTGAGT
GGGTGATAAGAAGCAAGCTTCTTTGCATCCAACCAAGCCGGGCGCAAAAGTTATTCGTGCAAGAA
AGTTTAACTTGCTTGCTTTTTGGCAATAAAAGTTAGTTCTTTTCCCCCGCTTCGCGCTTTCTCAA
GGTGTGAACAAAAAAAGAGTGCGGGTTGTAAAAAGCAAGTTCTTCTGCTTCTTGCAGCGGGAAAA
GAACTTCTGCCAACGTTAGCAGGTATGTGCAGAAGGTTGTTTGTTTTCCGAGCGCAGGGGAAGGG
CCTCCGAGGGGGATTTTTTTTGGTTGTTTGGAAGTTCTTGACCGAGCGCAGGGGTTCACCTGCGC
CCTTCTGCGTATGTGCAGAAGTTCTCCGAGCACAGGGGTTTCCAGAGGTGGCAGGAGTTCACACT
TCTGGGGCCCGGGAGGTATATCCATACCCATACACATACATAGTT
Right flanking sequence: Indices 105560 -- 106059
TGTATTGTCTTACTCGCTATCCCGGCCCCTGCCAGCCAGCCTTGGCGCGACTATTGCGAGCGTAG
GAGATCCCAGTTTAAAAGTTGGGAGTCCAGACTGTCGGGTTTATCGTGTCCGGACTCCTTGGATC
TCCTAGCCCCGTACTCAGAGGAATATAAGGGGGACACTCGTAAGACCACCCGGGATTTGGGGTTC
CCCTACTCAGAGGAATATAAGAGGGGGCGCGCACTTGTGCGAAGGTGCAGTGGGGAGGGTACCCC
CGACCGAGAAACAAAAAAGATCGTTCTTTCTGAATCAAACGTCGTTCTCTAAAGTTTCTGAGCCC
CGGCTTGCTTTCACCCAAGTGACCCAGCTTGGATTTGATTTCAGCTGCCAATAGCAGTATCTTCT
CCGTCCTTATACCGAAGGCCCTCCATCTCGCTCCAGCGACTCCGTAATACCTCCTATGGCCTGGC
CTCGCCAAAGTCCCCTTCGCTTCGCTGCGCGGGGACGGATTTACT
Found at i:105530 original size:18 final size:18
Alignment explanation
Indices: 105509--105558 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
105499 TTATATAGAT
105509 ATAGATATAGATATCTAG
1 ATAGATATAGATATCTAG
105527 ATAGATATAGATATCTAG
1 ATAGATATAGATATCTAG
*
105545 ATAGATATGGATAT
1 ATAGATATAGATAT
105559 ATGTATTGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.44, C:0.04, G:0.18, T:0.34
Consensus pattern (18 bp):
ATAGATATAGATATCTAG
Left flanking sequence: Indices 105009 -- 105508
TCCTCTGACAGCACTACCCACGGAGAACGAACGCTCCGCCGGGGAGAGAGTCTGAGTGGGTGATA
AGAAGCAAGCTTCTTTGCATCCAACCAAGCCGGGCGCAAAAGTTATTCGTGCAAGAAAGTTTAAC
TTGCTTGCTTTTTGGCAATAAAAGTTAGTTCTTTTCCCCCGCTTCGCGCTTTCTCAAGGTGTGAA
CAAAAAAAGAGTGCGGGTTGTAAAAAGCAAGTTCTTCTGCTTCTTGCAGCGGGAAAAGAACTTCT
GCCAACGTTAGCAGGTATGTGCAGAAGGTTGTTTGTTTTCCGAGCGCAGGGGAAGGGCCTCCGAG
GGGGATTTTTTTTGGTTGTTTGGAAGTTCTTGACCGAGCGCAGGGGTTCACCTGCGCCCTTCTGC
GTATGTGCAGAAGTTCTCCGAGCACAGGGGTTTCCAGAGGTGGCAGGAGTTCACACTTCTGGGGC
CCGGGAGGTATATCCATACCCATACACATACATAGTTATATAGAT
Right flanking sequence: Indices 105559 -- 106058
ATGTATTGTCTTACTCGCTATCCCGGCCCCTGCCAGCCAGCCTTGGCGCGACTATTGCGAGCGTA
GGAGATCCCAGTTTAAAAGTTGGGAGTCCAGACTGTCGGGTTTATCGTGTCCGGACTCCTTGGAT
CTCCTAGCCCCGTACTCAGAGGAATATAAGGGGGACACTCGTAAGACCACCCGGGATTTGGGGTT
CCCCTACTCAGAGGAATATAAGAGGGGGCGCGCACTTGTGCGAAGGTGCAGTGGGGAGGGTACCC
CCGACCGAGAAACAAAAAAGATCGTTCTTTCTGAATCAAACGTCGTTCTCTAAAGTTTCTGAGCC
CCGGCTTGCTTTCACCCAAGTGACCCAGCTTGGATTTGATTTCAGCTGCCAATAGCAGTATCTTC
TCCGTCCTTATACCGAAGGCCCTCCATCTCGCTCCAGCGACTCCGTAATACCTCCTATGGCCTGG
CCTCGCCAAAGTCCCCTTCGCTTCGCTGCGCGGGGACGGATTTAC
Found at i:108153 original size:5 final size:5
Alignment explanation
Indices: 108143--108273 Score: 154
Period size: 5 Copynumber: 25.6 Consensus size: 5
108133 TGCCCCCCCC
***
108143 GGGAA GGGAA GGGAA GTTCCA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
1 GGGAA GGGAA GGGAA G-GGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
*** ***
108194 GGGAA GGGAA GTTCCA GGGAA GTTCCA GGGAA GGGAA GGGAA GGGAA GGGAA
1 GGGAA GGGAA G-GGAA GGGAA G-GGAA GGGAA GGGAA GGGAA GGGAA GGGAA
108246 GGGAA GGGAA GGGAA GGGAA GGGAA GGG
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGG
108274 GTTTACTAGG
Statistics
Matches: 105, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
5 99 0.94
6 6 0.06
ACGTcount: A:0.36, C:0.05, G:0.55, T:0.05
Consensus pattern (5 bp):
GGGAA
Left flanking sequence: Indices 107643 -- 108142
GCCCCTGCGGCACAACTAAACACCCGGCTATAGCGGGACTCCTTGGGTTTATCCGACTTGGCCAG
GGCTGGCTGCTTTGGGCGGCGGGAAAGGGCGGGCGGGTAGTCTAGGGTTTCGCCCCCCCAAGGCA
GCCCCCTCAGTGCTAGGGGGCGGGAAAAGAAGCAGCCCTATCCTTCGGAGTGCTGAGGTGCCCGG
GCATCTCCGTATCGCCGGGAGTGCACTCCAGTGGGGAGTGCTGAGTAAACCCCTGTCGGGGGTCT
CACCCACCGGGATCCCTACCCATCCGGGGCGGGTCCAGTCAGCTGCTGTTCGTTCTGTCCAACTT
CCCGCCCGCCCTCCGGCCACAACCCCTTTCGTGCTTTACCACACCGGGGGGAATAGATGCTTGAC
TGCTGGTCAATCACTAAAAGTCGGATCCAAGGGCCGGGCCGTGCCGGTCCTCCTTGGATCTCCTA
CGTTCCTCGCTTCCTTCGCCGGAACAGCTCGTGCTTGCCCCCCCC
Right flanking sequence: Indices 108274 -- 108773
GTTTACTAGGAATGAGTGGGACAAGAGAGCAATGGCAATATTAATTAGTCTTACTGGCGGCAGGG
CTCGAAGAAACTGTGTTTACTTTTGCATCATATTTATTGTCCTTAAGATTGGCCAGATCATACAG
GTGGAGCGACTGTTTAGAGACGAGGTGGGCTTTCGGTGGGTGTTGTTTCACCGATCTGTCCATTC
GATGCGTTGTGCTACCGACCACCCCGTAAGCGAGAGCCATTGAAGCAGATACCTATTGGACATGA
GATGCGGCACTCGGGGCTACTGGCTCAACACCTCGTGATAAAGTCCAACTCCTGCTTTAAAGTTA
TTCAAAAGGCCAACTTTACTACGGGCTCTACCATGAAACCGGCCACTATGCCGACCTGTAAGCTG
AAAATCAAAGTTCTACCGGGCTCGACACTGCCACACCTGCGCACGCCATTGCTGTGCTGTTGTCC
AGATAGATACTCCTGCCGCAACCGGAGATAAGATGTTGTCGTTCC
Found at i:108214 original size:11 final size:11
Alignment explanation
Indices: 108198--108226 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
108188 AGGGAAGGGA
108198 AGGGAAGTTCC
1 AGGGAAGTTCC
108209 AGGGAAGTTCC
1 AGGGAAGTTCC
108220 AGGGAAG
1 AGGGAAG
108227 GGAAGGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.41, T:0.14
Consensus pattern (11 bp):
AGGGAAGTTCC
Left flanking sequence: Indices 107698 -- 108197
ACTTGGCCAGGGCTGGCTGCTTTGGGCGGCGGGAAAGGGCGGGCGGGTAGTCTAGGGTTTCGCCC
CCCCAAGGCAGCCCCCTCAGTGCTAGGGGGCGGGAAAAGAAGCAGCCCTATCCTTCGGAGTGCTG
AGGTGCCCGGGCATCTCCGTATCGCCGGGAGTGCACTCCAGTGGGGAGTGCTGAGTAAACCCCTG
TCGGGGGTCTCACCCACCGGGATCCCTACCCATCCGGGGCGGGTCCAGTCAGCTGCTGTTCGTTC
TGTCCAACTTCCCGCCCGCCCTCCGGCCACAACCCCTTTCGTGCTTTACCACACCGGGGGGAATA
GATGCTTGACTGCTGGTCAATCACTAAAAGTCGGATCCAAGGGCCGGGCCGTGCCGGTCCTCCTT
GGATCTCCTACGTTCCTCGCTTCCTTCGCCGGAACAGCTCGTGCTTGCCCCCCCCGGGAAGGGAA
GGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA
Right flanking sequence: Indices 108227 -- 108726
GGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGGTTTACTAGGAATGAGTG
GGACAAGAGAGCAATGGCAATATTAATTAGTCTTACTGGCGGCAGGGCTCGAAGAAACTGTGTTT
ACTTTTGCATCATATTTATTGTCCTTAAGATTGGCCAGATCATACAGGTGGAGCGACTGTTTAGA
GACGAGGTGGGCTTTCGGTGGGTGTTGTTTCACCGATCTGTCCATTCGATGCGTTGTGCTACCGA
CCACCCCGTAAGCGAGAGCCATTGAAGCAGATACCTATTGGACATGAGATGCGGCACTCGGGGCT
ACTGGCTCAACACCTCGTGATAAAGTCCAACTCCTGCTTTAAAGTTATTCAAAAGGCCAACTTTA
CTACGGGCTCTACCATGAAACCGGCCACTATGCCGACCTGTAAGCTGAAAATCAAAGTTCTACCG
GGCTCGACACTGCCACACCTGCGCACGCCATTGCTGTGCTGTTGT
Found at i:108215 original size:57 final size:57
Alignment explanation
Indices: 108152--108261 Score: 220
Period size: 57 Copynumber: 1.9 Consensus size: 57
108142 CGGGAAGGGA
108152 AGGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGTTCC
1 AGGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGTTCC
108209 AGGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAG
1 AGGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAG
108262 GGAAGGGAAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.36, C:0.05, G:0.53, T:0.05
Consensus pattern (57 bp):
AGGGAAGTTCCAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGTTCC
Left flanking sequence: Indices 107652 -- 108151
GCACAACTAAACACCCGGCTATAGCGGGACTCCTTGGGTTTATCCGACTTGGCCAGGGCTGGCTG
CTTTGGGCGGCGGGAAAGGGCGGGCGGGTAGTCTAGGGTTTCGCCCCCCCAAGGCAGCCCCCTCA
GTGCTAGGGGGCGGGAAAAGAAGCAGCCCTATCCTTCGGAGTGCTGAGGTGCCCGGGCATCTCCG
TATCGCCGGGAGTGCACTCCAGTGGGGAGTGCTGAGTAAACCCCTGTCGGGGGTCTCACCCACCG
GGATCCCTACCCATCCGGGGCGGGTCCAGTCAGCTGCTGTTCGTTCTGTCCAACTTCCCGCCCGC
CCTCCGGCCACAACCCCTTTCGTGCTTTACCACACCGGGGGGAATAGATGCTTGACTGCTGGTCA
ATCACTAAAAGTCGGATCCAAGGGCCGGGCCGTGCCGGTCCTCCTTGGATCTCCTACGTTCCTCG
CTTCCTTCGCCGGAACAGCTCGTGCTTGCCCCCCCCGGGAAGGGA
Right flanking sequence: Indices 108262 -- 108761
GGAAGGGAAGGGGTTTACTAGGAATGAGTGGGACAAGAGAGCAATGGCAATATTAATTAGTCTTA
CTGGCGGCAGGGCTCGAAGAAACTGTGTTTACTTTTGCATCATATTTATTGTCCTTAAGATTGGC
CAGATCATACAGGTGGAGCGACTGTTTAGAGACGAGGTGGGCTTTCGGTGGGTGTTGTTTCACCG
ATCTGTCCATTCGATGCGTTGTGCTACCGACCACCCCGTAAGCGAGAGCCATTGAAGCAGATACC
TATTGGACATGAGATGCGGCACTCGGGGCTACTGGCTCAACACCTCGTGATAAAGTCCAACTCCT
GCTTTAAAGTTATTCAAAAGGCCAACTTTACTACGGGCTCTACCATGAAACCGGCCACTATGCCG
ACCTGTAAGCTGAAAATCAAAGTTCTACCGGGCTCGACACTGCCACACCTGCGCACGCCATTGCT
GTGCTGTTGTCCAGATAGATACTCCTGCCGCAACCGGAGATAAGA
Found at i:110482 original size:5 final size:5
Alignment explanation
Indices: 110474--110504 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
110464 TGCTTGCCGG
110474 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA G
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA G
110505 AAGATCGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 109974 -- 110473
CGTGAGCGGTTGTGATTAAATAACAGTATCCGGGAACATATCTTGAGGACGTCCCAACGCACTCA
TAGTATCGTTGTGAATGTATAAGCTGAAGCTATGGAAACCCAAACTTTCGGGAAGTAAGTTTAAA
AGTTGCTTGCCCAGTTGAGATGTTAAATTATTGCATCTCGGAACACGATCCAATAATTATTGTAT
TGAGTAGTCGGATTGGCCTTCAGAACTAACTCTTTTTTGCTCTGAGAGTGCGTGCCCATCCGCTA
ACCAGCCAGCCTTTCCGGCAAGGATTGGCCTTTAGAAGCTAGCTCTTTCCGGCATTGCCCGGAGT
GAGTGTCCATCCGCCAGCCTAGAAGTGAAGGCTCTTGGTTGCCCATACGCCAACTGTTATGGCTC
TTGGTTGCCTATCCCGCCACGAGGTTTTGGTATATAAAAGGGGTGGGGTGAGAAGCCAACGGATG
CCTAGTAACGGGAAAGGCCCGGCAACATTTTGCTTTGCTTGCCGG
Right flanking sequence: Indices 110505 -- 111004
AAGATCGATACGGCCCAGCGTTGGGATCTGGACCTACGCTTGCCCGGAGGAGGATGGGTAGGCGG
AGAGGGCGGCTTGGAGGCCTTCCATTCCCCTTTTATATCCGCAGGCAGTGGGGGGAAGGAGAAGC
TTCGAGCTACGGTTGCTACGCAAAGCAAGTTTCTATCTACGAATGAAAGAAGCAAGTTTCGGGGC
GGGGGAAGAAGCGCGCGCGCGCTTCTTCCCCTGGCAGCAGATCGCGGAAGAGGGCAGGAGCCCGA
ACACTTGCTTTTTGTTGGCCATTTGTTTTTTGGGCTAGTAATAAGCCAGCCTTTACTGCTGTCAG
GACTCAAGCACTGCACTGCCTACCACTCGAGGAATGCCTACCAATGGAAAGCCTTCACGGCGCCG
CATTGGTTTATGGAAAGCCTTGCTTGCCTTGGCACAGCAGCCCTTCACCTCTTCCCCTGCGCTCG
GGACTTCTGCACATACCTGAGACATCTATTGTAGTTACGTGTAGA
Found at i:111817 original size:5 final size:5
Alignment explanation
Indices: 111809--111848 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
111799 GGCACGGCAC
111809 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
111849 AAGAACCTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 111309 -- 111808
TTGGGAAGCTTGCTTGCTTGCGCAACTCAGCGCTAAGGCCGGCTGGCTGAAGCCCAGCCCAGTTG
GTTGGTTTGGGTATAGCAGGACTTGAACCTGCGACCATTAGGTTAAAAGCCCAATGCTCTACCGA
CTGAGCTATACACCCAGATCTTATTATTATTATTATTCTTATTGCTATTACTAGTTAGGTCGGAT
CAGCCAGTCGTCTGCATACCTTATCTAAACCTGGGCACGCACGGGGAGAGTGGGTTGGCCAGGGT
GGGTACCCAGGGGGAAGAGGAAGGTTGTTTAAAAGGGGAAGGTAGGAGATCCAAGGGATCCGAGG
ACACCCGTAAAAGGAGGGAGAGTGGGACAACTTGGATCCCGACAACTGTTTAAGGCCAGTTTGCC
ACTTTTTGATTAAGAATAGTGTAAAAAAAGGTTGTTTGTGGCTTGCGGTTGTTTTCCCCCGTAAA
AGTTGCCGTGCCTTCACTTCGCGCAGCGAAGTGAAGGCACGGCAC
Right flanking sequence: Indices 111849 -- 112348
AAGAACCTTTTCCCCTGCAAGCAAGCAAGCAAAAAGTTCACTCATTCGAAGGTATGTGCAGAAGT
TCTCCGAGCGCAGGGGAAGAGGTTAAGGGGCTTTTAAATACGTCGGGAGAGTGGGACACTCGACT
GACTTTGCCAGGATTCCCGTGCTAGCCGTCCCGACTGACTTTTTTAATAGGTTCTTTATTTAAAT
AAACCGACGGCAAAGGAGGGCTACGCTCCTCTGGAGTACATGTTTAACGGCTGCCGGCAGTGGCA
TCCGACACTACCTCTTAACAGAGTCACTCGCCACTGCTCACTAGACAAGAGCAATCACACCTGGG
AACCTGCTCCTTATCTAGTTAAAGGCTCCTTATCTAGTTAAAGCCCAGAGACTTATAAAAAAAAA
CGGGAATCGAGCCTGGCCAATTGGACTGGGGCACGAAGAAGCATCTCAGCCGGCCAGCCAATCCA
ATAAGGTATGTGCAGAAGGGCCGAGCGCAGGGGAAGGCCCACAAA
Found at i:112203 original size:19 final size:19
Alignment explanation
Indices: 112179--112216 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
112169 CTGGGAACCT
112179 GCTCCTTATCTAGTTAAAG
1 GCTCCTTATCTAGTTAAAG
112198 GCTCCTTATCTAGTTAAAG
1 GCTCCTTATCTAGTTAAAG
112217 CCCAGAGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (19 bp):
GCTCCTTATCTAGTTAAAG
Left flanking sequence: Indices 111679 -- 112178
CTGTTTAAGGCCAGTTTGCCACTTTTTGATTAAGAATAGTGTAAAAAAAGGTTGTTTGTGGCTTG
CGGTTGTTTTCCCCCGTAAAAGTTGCCGTGCCTTCACTTCGCGCAGCGAAGTGAAGGCACGGCAC
GGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAAAGAACCTTTTCCCCTGCAAGCAAG
CAAGCAAAAAGTTCACTCATTCGAAGGTATGTGCAGAAGTTCTCCGAGCGCAGGGGAAGAGGTTA
AGGGGCTTTTAAATACGTCGGGAGAGTGGGACACTCGACTGACTTTGCCAGGATTCCCGTGCTAG
CCGTCCCGACTGACTTTTTTAATAGGTTCTTTATTTAAATAAACCGACGGCAAAGGAGGGCTACG
CTCCTCTGGAGTACATGTTTAACGGCTGCCGGCAGTGGCATCCGACACTACCTCTTAACAGAGTC
ACTCGCCACTGCTCACTAGACAAGAGCAATCACACCTGGGAACCT
Right flanking sequence: Indices 112217 -- 112716
CCCAGAGACTTATAAAAAAAAACGGGAATCGAGCCTGGCCAATTGGACTGGGGCACGAAGAAGCA
TCTCAGCCGGCCAGCCAATCCAATAAGGTATGTGCAGAAGGGCCGAGCGCAGGGGAAGGCCCACA
AACAACCAACCTTCAGAGGGATATAAGAGAGAGCAGAAGTTCACACAAACTTCTTGGGCCGATTT
CCAGAAGGTTGGTTGGAACTTCTGCGTTGTTGGTTGGCTGGTTCTTCGCGCAGCTACGTGAAGGA
GCCCGCCCAATTTAATCGAGCCCAAGATTAACAAGAGACACTCGCCAATTAGACAATTTAAAAAT
CCGGTACGGTCCGGGGGGGGGGAAGGGCAAGAGAAACAATCTCTTGTATCCCCAATCCGGATCAC
AATTACAATCAATAATGGCCCGGTGGCCCACTTGACTTGGATTCCCAAGCCCCTCTATATACGTG
GTTTCAATAAGGATCTCAATTCCAAGCCGGGGTAATACCCACTTT
Found at i:113218 original size:20 final size:20
Alignment explanation
Indices: 113193--113233 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
113183 CGTATACCCC
113193 CTTGGATTGGAACAACTACA
1 CTTGGATTGGAACAACTACA
113213 CTTGGATTGGAACAACTACA
1 CTTGGATTGGAACAACTACA
113233 C
1 C
113234 GTACGGCAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (20 bp):
CTTGGATTGGAACAACTACA
Left flanking sequence: Indices 112693 -- 113192
CCAAGCCGGGGTAATACCCACTTTCCTCCTTGAAAGTCAGTCGGGTATTATGGCCCTTCCCCTCT
TTACTTGGAGTACCAATCCCAAGACAATTAAGGATCCCAATGACAATAAAGACTGGCCAAAACTA
CCGTACGTAGGGAATCTGGCCAATCGTGGATTCCCGTGGGGAAGGGGTTGGGACAAGCAATTCAA
GATCCCAATTACAATAAATAATGGCTAAACCGGTTTGATGATAATATGGCCCTTATATCTTGCTT
GGGATTTATATACTTATCTAAGTGGTATGAATGGAAACACCCCACTAGGATCCTTAGCAAATACA
CCGTTTAAAAGGAGAGATAGCTAATCTCCTAGTGAAGCCATTCCACCAGAAATGGGATGCCCGTA
CCTTTTACAGAAACCCCTTAACGAGGGGCAAGTGTTACCCTGGAAGGAGGATCTATTGTCAACTT
GACTGGCACTCCCTTATGGTAAGAACCCATCTCTTCGTATACCCC
Right flanking sequence: Indices 113234 -- 113733
GTACGGCAGATAGCAAAGATAGGATATCCAAGGGCACACTTATCTAATCAGAGGGATTTACTAGG
GGATCCGTGCCTACCTTTGTAAGCGAATGAGGGGTTCATTCGTGCAACCAACAACCTTTTGGGCC
CAGAAGGTTGGTTGTTTGAATGAGGTATGTGCAGAAGTTATCCGAGCGCAGGGGAAGAGGTTAAG
GGGGTTCCAGAGGTGGCAGGAGGTTGTTTGGAAGTTCTTGACCGAGCCAGGAGTTGGGGCTGCGA
GAACTTACACCCTTCTGCCTTCTGCCTTCTGCAACTGTATGTGCAGAAGGGTGTAAGTTCTCCGA
GCTTGCCAGAAGTTGGGGTAACTTCTGCCCCGCGAGAACACCCTGCCACCTCTTCCCCCCTGCGC
TCGGTCAAGGTATGTGCCTTCTGCAACTGTATGTGCAGAAGGGTGTAAGTTCTCCGAGCACCGGG
GTTTTCCCCACAAACAACCAACCAACCTTCAGAGTAATATAAGAG
Found at i:114201 original size:12 final size:12
Alignment explanation
Indices: 114184--114246 Score: 98
Period size: 12 Copynumber: 5.6 Consensus size: 12
114174 AACAACCTTA
114184 AAGAAAGAAATC
1 AAGAAAGAAATC
114196 AAGAAAGAAATC
1 AAGAAAGAAATC
114208 ----AAGAAATC
1 AAGAAAGAAATC
114216 AAGAAAGAAATC
1 AAGAAAGAAATC
114228 AAGAAAGAAATC
1 AAGAAAGAAATC
114240 AAGAAAG
1 AAGAAAG
114247 TTCGGCCACG
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
8 8 0.17
12 39 0.83
ACGTcount: A:0.67, C:0.08, G:0.17, T:0.08
Consensus pattern (12 bp):
AAGAAAGAAATC
Left flanking sequence: Indices 113684 -- 114183
CCGGGGTTTTCCCCACAAACAACCAACCAACCTTCAGAGTAATATAAGAGAGAGCAGGAGTTATT
TTACCGCGGGCCTTCCCCCGGGACAGGAGGGTGTTCTCTTCCCCTGCGCTCGGTCAAGAACACCC
TTCTGCCTGCTACGGGTGGGTGAAAGCAGAAGAACCCCTGCCACCCTCTTATATCCCTCTTCAGG
TTGTTTGTGGGGAAACCCCTGCGAAAACTTCTGCTTCTGCTTTTGGAAATCCTTGGATCCCGACA
ACTGTATTCGTCAGAAGTTGCTATTCGTGCTAACCACTTTTAAAGTATTTTAAAGGGCCTTCCCC
CGTGCAAGCAAGCCTACCTTTGTGAACGTGATAAAAGTGTGGCTCCGTGCCTACCTTTGTAAGCG
AAACAACCTGGCACGGCCTTTCGTGCCACTTCTGGCAAGCAAGCAAGCAAGAAGCCACCGCACGG
GACTTTTCGGCAAGCCACTTTTACACAGTTTTCGAAACAACCTTA
Right flanking sequence: Indices 114247 -- 114746
TTCGGCCACGAGATTACAAAGGTAGGCACGAGGGAAGGGAAAGGTGTGAACAAAAAAAGAGTGCG
GCTGCTTTCGCAGAAACCAACTTCTGCAACCTTTTTGGAACTCCCAAAAAAGCTATCTTCGCGCA
GCGAGGAAAAGCAAGCTCTTCCCCCGTTTTTTAGGAAATCCGAAAAAGATTGCTGAGCGCAGCGG
GAACTTATTGCTTGCGAAGGTTAAGCCTACCTACCGTGCCCGTGCCAGCAAAAAAGAGTGCCGGT
TTCGCAGCGAAGCGAAGGACAGCAAAAAAGAGTGCCGGTTTCGCAGCGGGAGGTAGCAGGCATGT
GCAGAAGTTCTCCGAGCGCAGCGAGCAGAAGTTCACACTTCTGGGGGTTCCCGGTTTTTGCTGGC
TGCAAAAAGTGTGAACTTCTGCTTGCTTTTTTTTGGACCAAGAAAGTGCCAAAAGAATCTTCGCG
CAGCGAAGCATTACAAAGGTAGGCACGGATTCGCTTACAAAGGCA
Found at i:114225 original size:32 final size:32
Alignment explanation
Indices: 114184--114245 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
114174 AACAACCTTA
114184 AAGAAAGAAATCAAGAAAGAAATCAAGAAATC
1 AAGAAAGAAATCAAGAAAGAAATCAAGAAATC
114216 AAGAAAGAAATCAAGAAAGAAATCAAGAAA
1 AAGAAAGAAATCAAGAAAGAAATCAAGAAA
114246 GTTCGGCCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.68, C:0.08, G:0.16, T:0.08
Consensus pattern (32 bp):
AAGAAAGAAATCAAGAAAGAAATCAAGAAATC
Left flanking sequence: Indices 113684 -- 114183
CCGGGGTTTTCCCCACAAACAACCAACCAACCTTCAGAGTAATATAAGAGAGAGCAGGAGTTATT
TTACCGCGGGCCTTCCCCCGGGACAGGAGGGTGTTCTCTTCCCCTGCGCTCGGTCAAGAACACCC
TTCTGCCTGCTACGGGTGGGTGAAAGCAGAAGAACCCCTGCCACCCTCTTATATCCCTCTTCAGG
TTGTTTGTGGGGAAACCCCTGCGAAAACTTCTGCTTCTGCTTTTGGAAATCCTTGGATCCCGACA
ACTGTATTCGTCAGAAGTTGCTATTCGTGCTAACCACTTTTAAAGTATTTTAAAGGGCCTTCCCC
CGTGCAAGCAAGCCTACCTTTGTGAACGTGATAAAAGTGTGGCTCCGTGCCTACCTTTGTAAGCG
AAACAACCTGGCACGGCCTTTCGTGCCACTTCTGGCAAGCAAGCAAGCAAGAAGCCACCGCACGG
GACTTTTCGGCAAGCCACTTTTACACAGTTTTCGAAACAACCTTA
Right flanking sequence: Indices 114246 -- 114745
GTTCGGCCACGAGATTACAAAGGTAGGCACGAGGGAAGGGAAAGGTGTGAACAAAAAAAGAGTGC
GGCTGCTTTCGCAGAAACCAACTTCTGCAACCTTTTTGGAACTCCCAAAAAAGCTATCTTCGCGC
AGCGAGGAAAAGCAAGCTCTTCCCCCGTTTTTTAGGAAATCCGAAAAAGATTGCTGAGCGCAGCG
GGAACTTATTGCTTGCGAAGGTTAAGCCTACCTACCGTGCCCGTGCCAGCAAAAAAGAGTGCCGG
TTTCGCAGCGAAGCGAAGGACAGCAAAAAAGAGTGCCGGTTTCGCAGCGGGAGGTAGCAGGCATG
TGCAGAAGTTCTCCGAGCGCAGCGAGCAGAAGTTCACACTTCTGGGGGTTCCCGGTTTTTGCTGG
CTGCAAAAAGTGTGAACTTCTGCTTGCTTTTTTTTGGACCAAGAAAGTGCCAAAAGAATCTTCGC
GCAGCGAAGCATTACAAAGGTAGGCACGGATTCGCTTACAAAGGC
Found at i:114245 original size:20 final size:20
Alignment explanation
Indices: 114188--114233 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
114178 ACCTTAAAGA
114188 AAGAAATCAAGAAAGAAATC
1 AAGAAATCAAGAAAGAAATC
114208 AAGAAATCAAGAAAGAAATC
1 AAGAAATCAAGAAAGAAATC
114228 AAGAAA
1 AAGAAA
114234 GAAATCAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.67, C:0.09, G:0.15, T:0.09
Consensus pattern (20 bp):
AAGAAATCAAGAAAGAAATC
Left flanking sequence: Indices 113688 -- 114187
GGTTTTCCCCACAAACAACCAACCAACCTTCAGAGTAATATAAGAGAGAGCAGGAGTTATTTTAC
CGCGGGCCTTCCCCCGGGACAGGAGGGTGTTCTCTTCCCCTGCGCTCGGTCAAGAACACCCTTCT
GCCTGCTACGGGTGGGTGAAAGCAGAAGAACCCCTGCCACCCTCTTATATCCCTCTTCAGGTTGT
TTGTGGGGAAACCCCTGCGAAAACTTCTGCTTCTGCTTTTGGAAATCCTTGGATCCCGACAACTG
TATTCGTCAGAAGTTGCTATTCGTGCTAACCACTTTTAAAGTATTTTAAAGGGCCTTCCCCCGTG
CAAGCAAGCCTACCTTTGTGAACGTGATAAAAGTGTGGCTCCGTGCCTACCTTTGTAAGCGAAAC
AACCTGGCACGGCCTTTCGTGCCACTTCTGGCAAGCAAGCAAGCAAGAAGCCACCGCACGGGACT
TTTCGGCAAGCCACTTTTACACAGTTTTCGAAACAACCTTAAAGA
Right flanking sequence: Indices 114234 -- 114733
GAAATCAAGAAAGTTCGGCCACGAGATTACAAAGGTAGGCACGAGGGAAGGGAAAGGTGTGAACA
AAAAAAGAGTGCGGCTGCTTTCGCAGAAACCAACTTCTGCAACCTTTTTGGAACTCCCAAAAAAG
CTATCTTCGCGCAGCGAGGAAAAGCAAGCTCTTCCCCCGTTTTTTAGGAAATCCGAAAAAGATTG
CTGAGCGCAGCGGGAACTTATTGCTTGCGAAGGTTAAGCCTACCTACCGTGCCCGTGCCAGCAAA
AAAGAGTGCCGGTTTCGCAGCGAAGCGAAGGACAGCAAAAAAGAGTGCCGGTTTCGCAGCGGGAG
GTAGCAGGCATGTGCAGAAGTTCTCCGAGCGCAGCGAGCAGAAGTTCACACTTCTGGGGGTTCCC
GGTTTTTGCTGGCTGCAAAAAGTGTGAACTTCTGCTTGCTTTTTTTTGGACCAAGAAAGTGCCAA
AAGAATCTTCGCGCAGCGAAGCATTACAAAGGTAGGCACGGATTC
Found at i:117618 original size:5 final size:5
Alignment explanation
Indices: 117608--117639 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
117598 CGACGCTCCC
117608 AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AG
1 AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AG
117640 AAGTCCCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.78, T:0.00
Consensus pattern (5 bp):
AGGGG
Left flanking sequence: Indices 117108 -- 117607
GATTTGCGAGCCACATCTTCTTCCTAGCATAAGAGATATGAGTAGCTTATAGTGTTGAACCGGCC
CGGCTTTGTTCAGCAAGGGCCTCCAGAAGGGTGGTTGGCTGGTTCTCCGCGCAGCTACGTGAAGG
AAAGGGGAGTGGGATTGAGGGGCTAGGCTAGAATCATTCAGTGTCACCCCGAGATCGATTGATCT
TTTTTCGTTCGTTCTGAGCTGGGGGGAACCTATAGGTTGATGCACTTCCATCCGACCGACCGACC
TTTATTTATGAGTAGCGACGATTCGTCATCGAGCAGTGAGCTTTTCACAATCAATAGTGAGTCCG
CTTTCATCAAACGCGCATTCCCTCTTCCTACCGAGCGCCAGAAGCAGCTATCTTCGCCCGCCATA
AAGTTGGTTGGTTGTTTCTCTATCGAGAAACAGTCTTCCGGCAGTGGAGGAATTCACTCGGAAGG
GCCTCGGAGGCCTCTCCCTACCCGGCCAAGACACTCGACGCTCCC
Right flanking sequence: Indices 117640 -- 118139
AAGTCCCTGTTCCGGTAAAGACATGACCTCTATTTGAAGAGGGAGATAGATGCCCCTCCTCCTGG
TTTGTTGGTAAAGGAACATCCGGATCAGCTTGTCTTACCGAGAGCTTGTCTCTTTTATGAGCTCT
TCGTTCCTCTACTTGTTCTTGTTCTTGTATCTGTTCTTTGTTCCCTACTTGTTTATTCATTTGTT
CTTGCCCGTGCTTCCATCAATCAAAGGCACATACCTTGACCGAGCGCAGGGGTTCTCCGAGGAAC
TTCTGCGGATCGAACTAGGGATTAGTCAACTGCCTCTAACTAAAAGGAATCAAACTAGAGGTTAG
TTCAACTGCTTCTAACTAATCCCTTCCATTAGTATTCCTAATATATGGACCAAAATGAGCTGAGC
CCGGTAGACCTTCCATCTATGCTTCTGGGACTGACTTCAGAAAGAAGGGGGCCCAGTTCACCTCT
CTATATAGGTGTTCGGTTTGCTCACTCCAGTGGGAATAGGCGTGC
Found at i:119054 original size:17 final size:17
Alignment explanation
Indices: 119032--119065 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
119022 GGAGGTCCTT
119032 TTGAAAAGATAATACCG
1 TTGAAAAGATAATACCG
119049 TTGAAAAGATAATACCG
1 TTGAAAAGATAATACCG
119066 GCCGGCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (17 bp):
TTGAAAAGATAATACCG
Left flanking sequence: Indices 118532 -- 119031
ATCACGTATATAGAGTACAATCTGGGTCACACACCAATTGATCTCTCATCTCCTCGGTGATGACG
GATCGGTGTCCGAGTTAGCCTCTACCCTTTGGACCTTTCCGAGTTATTCAATATTGCTTCTTTCG
TATGGCGGCACTTGTGACCCACCCTTCACGTAGCTGCGCGAAGAACTTACTTTTGGCCCCCCGCC
AACCCGCGCAAGCAAGCTTCTTGGTCCAACAACTTCCACGCAGAAGATACTTCTGCTGCGCGAAG
ATTCAACACGCAAGCAAACCGCAGAAGATTGTTTGGTTGGAACTTCTGCTTCGCTACGCGAAGAT
TCAACACGCAAGCAAGCCTGCAACCCTTCTTGGTCCAACAAGAACTTCGCTACGCGAAGATTCAA
CACCCTTTCTTGCTTGCTTTGTCCAACAAGAACTTCGCTACGCGAAGAACCAACCTTCCAACCGG
CCAACCTTTTCCCCACCCCACCCCACCCCACCCCTGGAGGTCCTT
Right flanking sequence: Indices 119066 -- 119565
GCCGGCAATAAATCAACCCGTTAAGCGAGTCGGGATCCAAGGACCCACTCGTAGCAGGCAGAAGG
GTGTTCTTTACCGAGCGCAGGGGAAGAGAACACCCTTCTGTCCCCCCGCGGTAAAATAACTTCTG
CTCTCTCTTATATTCCTCTGAAGGTTGGTTGGTTGTTTGTGGGCCCTTCCCCTGCGCTCGGTAAA
GAACTTCCAACAACCCTTCTGCCTCCTACAACTCTATTCTATCCTAAAAAGTTCACCGGGAGACG
ACTCCTTGGATCCCCCTTACGGGACCCCTAAGCCGGGGGGCCGGCCTGGGATATCATCCCTTCCA
CAGCAAGCGATGGTCGATGGAGGTATGGCTGAGTGGCTTAAGGCATTGGTTTGCTAAATCAACAT
ACAAGAAGATTGTATCATGGGTTCGAATCCCATTTCCTCCTTTCTGAATCACGAGAGTGGAACGA
ATCAAGAGTGGCTGCCGGCAGGCGGAGTGCCAGCTCCCTCTCCCA
Found at i:122795 original size:15 final size:15
Alignment explanation
Indices: 122775--122808 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
122765 TGCGCGGGGG
122775 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
122790 GAAGGGGAAGAAGAA
1 GAAGGGGAAGAAGAA
122805 GAAG
1 GAAG
122809 CAGAAGCCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (15 bp):
GAAGGGGAAGAAGAA
Left flanking sequence: Indices 122275 -- 122774
AGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACC
AAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCGTATAAGGTCCATGGCCCG
AGGTAGAGCACTCAATGGGCGGCGGGTGGCCCAAAGCTTGACCAACCCCAAGGAAACTCCGAATA
CAGGCCTAGAATCGTTTGTACAGACAGACTTTGGGTGCTAAGATCCAAAGTCGAGAGGGGAACAG
CCCAGATCGTACGCTAAGGTCCTTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGAC
AACCGGGAGGTGGGCTTGGAAGCAGCCATCCTTCGAAGAAAGCGTAATAGCTCACCGGCCTAGCG
ATTTCATGGCACCGAAGATGTCCCGGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGC
AAGCAAGCATCATCGCGGGCCTGAACTTATTCCCCTGCGCGGGGG
Right flanking sequence: Indices 122809 -- 123308
CAGAAGCCCGTTGTAAGTTCGCAGGGGAAAAGGTTGAAACTTCTGCGTAGCTGCGCGAAGCAGAA
GTTCACACCAAACTCCTGGAGTTCCTTCACTGAACTATCCAACCAACCAAACTTCCCGCTTGCCC
GCGGGGGAAGAAGGGGCTTGCTTGCCCGCTTGCTTGCTTGCTTCTTCAAGTGTCAGTAGCGGAAC
GTTCTGTCAATCGAGGAAGGTTGTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGAC
ATGAGTAACGAGAAATCATGCGAAAAACATGATCGCCTGCCAGTTCCAGGGTTTCTGCGTTCAGT
CAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCGAAAGGGCTGCCGTCCGATGGGTACACG
AAAGTGACGAAGTTGCTTGCTTTGACTACATGCGTGTTTGTTAAACTCGTGGATTGGATGATTGG
GCGGGGGGCTACAAAGCAGCCACCCGGCACTCATTGGCTGGGGCT
Found at i:122814 original size:15 final size:15
Alignment explanation
Indices: 122781--122814 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
122771 GGGGGAAGGG
**
122781 GAAGAAGAAGAAGGG
1 GAAGAAGAAGAAGCA
122796 GAAGAAGAAGAAGCA
1 GAAGAAGAAGAAGCA
122811 GAAG
1 GAAG
122815 CCCGTTGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.41, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAGAAGCA
Left flanking sequence: Indices 122281 -- 122780
GAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATC
GGATATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCGTATAAGGTCCATGGCCCGAGGTAG
AGCACTCAATGGGCGGCGGGTGGCCCAAAGCTTGACCAACCCCAAGGAAACTCCGAATACAGGCC
TAGAATCGTTTGTACAGACAGACTTTGGGTGCTAAGATCCAAAGTCGAGAGGGGAACAGCCCAGA
TCGTACGCTAAGGTCCTTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCGG
GAGGTGGGCTTGGAAGCAGCCATCCTTCGAAGAAAGCGTAATAGCTCACCGGCCTAGCGATTTCA
TGGCACCGAAGATGTCCCGGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAAGCAA
GCATCATCGCGGGCCTGAACTTATTCCCCTGCGCGGGGGGAAGGG
Right flanking sequence: Indices 122815 -- 123314
CCCGTTGTAAGTTCGCAGGGGAAAAGGTTGAAACTTCTGCGTAGCTGCGCGAAGCAGAAGTTCAC
ACCAAACTCCTGGAGTTCCTTCACTGAACTATCCAACCAACCAAACTTCCCGCTTGCCCGCGGGG
GAAGAAGGGGCTTGCTTGCCCGCTTGCTTGCTTGCTTCTTCAAGTGTCAGTAGCGGAACGTTCTG
TCAATCGAGGAAGGTTGTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGT
AACGAGAAATCATGCGAAAAACATGATCGCCTGCCAGTTCCAGGGTTTCTGCGTTCAGTCAATCT
ACGCAGAGTGAATCGGTCCCTAAGGAACCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTG
ACGAAGTTGCTTGCTTTGACTACATGCGTGTTTGTTAAACTCGTGGATTGGATGATTGGGCGGGG
GGCTACAAAGCAGCCACCCGGCACTCATTGGCTGGGGCTCCCAGG
Found at i:125472 original size:5 final size:5
Alignment explanation
Indices: 125462--125495 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
125452 CTCGCAGGGG
125462 CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCC
1 CCCCT CCCCT CCCCT CCCCT CCCCT CCCCT CCCC
125496 GGGGAGGGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.82, G:0.00, T:0.18
Consensus pattern (5 bp):
CCCCT
Left flanking sequence: Indices 124962 -- 125461
GAGAGCCAGTCACTCCACGTGTTCCCCCCGCCCCCCGGCTGGCTTGCCAGCGGGAGTCCACTCCT
TCACCCCCGTGTTCTGCCAAACTGCCATGCGGCACCGGTTTGTCGAGGGAAAGCAAGGGGGGGAA
TACCACTCGACCCAGTGCCGGCAAATTGCAATTCGTGCAAGAGGGAGGGTGGTTCCTGGCACGGT
AGCTGCGCTCAGATTCAAACAACCTTCTGCACACCTGAACTCCGCTGCGCGAAGAACCAGGTCCA
ACAAGTGCGAACTTTCGGTAGCTGCGCGAAGAACCAGCCAACCAACCAAACAACCTTCTGGAGTT
CGCAGAAGTTCTCTTCCCAGGGGAGGGTAGGGGAGGGGAGGAGAACCCCTGCGCGAAGCAGAAGT
CCCGCAGGTATGTGCAGAAGGGTGTTCTCCGAGCGCCCCCTGGGGAAAAGAACTCCTGCTCGCGG
TGCTCGGCCCTTCTGCACATACGCAGAAGGGTGTTCTCGCAGGGG
Right flanking sequence: Indices 125496 -- 125995
GGGGAGGGGCCTGCGCTCGGTCAAGAACACCCTTCTGCAACCAAGGGGAAAAGGTTGACCTTCTG
GTTCCAAACAACCAACAACCTTCTGCTTCCCCCCAAACAACCCGTCCAACAAGTGCGAACTTTCG
GCACGGGGGAAGGGAGGGGAAAGCTGCGCGAAGAACCGGCCAAACAGCAACCCAACCAAACTCCT
GGTCCAACAAGAAAAGAACTCTTCCCCTTCTTGCTGCGCGGAGAACAACTCCTCTCTTATATCCC
TCTGAAGGTTGGTTGTTTGTGGGGTCTGCCCAACAAGAACTTCGCGTAGCGAAGAACCAGCCAAC
CAACGGTCAACCCGCCAACCCGCGCAAGCAAGCTTCTTGGTCCAACTTTTAAGCAGGCAGGTTCT
TCGGTTGTTCTACGCGAAGCAGAAGCCCCCCTTCCCGCGCGAGCCGAGCGAGCTTCTTGGTCCAA
CTTTTAAGCAGGCAGGTTCTTCGGTTGTTCTACGCGAAGAACCAG
Found at i:127200 original size:79 final size:79
Alignment explanation
Indices: 127069--127230 Score: 324
Period size: 79 Copynumber: 2.1 Consensus size: 79
127059 AACCCCGCCA
127069 ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
1 ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
127134 CGGTAAAGGCACAT
66 CGGTAAAGGCACAT
127148 ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
1 ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
127213 CGGTAAAGGCACAT
66 CGGTAAAGGCACAT
127227 ACCT
1 ACCT
127231 TTTTTTTGGA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 83 1.00
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (79 bp):
ACCTGAACCTCTCTCTTATATTACTCTGAAGGTTGGTTGGTTGTTTGTGGGCCTTCCCCTGCGCT
CGGTAAAGGCACAT
Left flanking sequence: Indices 126569 -- 127068
GTTAGAACCTTCGCGGTAGCTGCGAAACCGGCACTCTTTTTTGATCCGTCCAAAAAGAACTTCTG
CTTCGCTGTGCGAAGCAGAAGTCTCTTCTGCACACTTTAAACACTTCTTCCCCTGCGCGGGAAGA
AGGGGAAGAAGAAGAAGCAGAAGTTCTGCCAAACTGCCTGCAACCCGTCCAACAAGTGCGAACTT
TCGGCACGGGGGAAAGCTGCGCGAAGAACCCCGCCAACCCGCATAAGTTCCGGAGTGGAATACTT
GCTTGCTTTCTTTAAAGTGTGCAGAAGAACTTCTGCAGTTCTTCTGCGCGAAGATTGATTCTTTT
GGGAGTTCCGTTCCAACTTGCTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGAAAGTTGGTTGAAA
CACACTTCTGGGGTTGGTTTCTGCGCGAAGCAGAAGAACTGCAGAAGTTCTTCTGCAACCAACAC
TCCAACAAGTGCGAACTTTCGGTAGCTGCGCGAAGAACCCCGCCA
Right flanking sequence: Indices 127231 -- 127730
TTTTTTTGGAGTGGAATACTTGCTTGCTTTCTTTAAAGTGTGCAGAAGGCGCATTCTTTTGTCTT
GGAGGTCTTCCCCAAAAAGAACTTACTTCGCTGCGCTCAGAACCAACCTACCTTTCTGGTCCAAG
AAGAACTTTCGGTAGCTGCGCGAAGATTCTTTTGGAAGTCCAATCCAATCCAAAAAGTGTGCAGA
AGTTCTGCGCTCAGAACCAACCTACCTTTCTGGTCCAAGAAGAACGGCACGGCAGCTGCGCGAAG
ATTCTTTTGGAAGTCCTGGCACGGGGGAAAGCTGCGCAGAAGTCTCTGCTTCAAACAACCAACAA
CCAACCTTTTGCAACCCTTCTGCACACCTGAACTCCGCTGCGCTCAGAACCCCGCCAACCCGCAG
AAGTTCCTTGGCAGAAGGGTTGTTTGCTTCTGCTTCGCTGCGCGAAGAACCCCGCCAACCCGCAG
AAGTTCCTTGGCAGAAGGGTTGTTTGTGTGAACTTCTGCTTCGCT
Found at i:130801 original size:41 final size:41
Alignment explanation
Indices: 130744--130821 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
130734 TGGGGAAGAC
130744 CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACCGGAG
1 CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACCGGAG
130785 CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACC
1 CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACC
130822 TTTAAAGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.19, C:0.26, G:0.27, T:0.28
Consensus pattern (41 bp):
CGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACCGGAG
Left flanking sequence: Indices 130244 -- 130743
ACGAGACCAGAGACTCGAGGACGAGAGACTTGAAAACAGCAACAACTTTGTGCGTGCAAAAATCT
CCACCAGAGACCCGAGGCCAACGGAAGGGAGCACTTGAAATGACGACGAGTCAGTCAACCTGGAG
GAAAGACGGAAAGCCAGAGGAAAACCGAGTAAAGACACTCCTCGATACCGAGGACAACTTCTCCG
AGGACAGACACTTGAGATCACAAAGACATGGGGGGCGGGTGGGATAGCGGGTCGGGAAGCGGGAG
CGTGTCACCCAATGAGTGCAAAAGTGCCTACCTTTGTAAGCGAAACAACAACCCGCCACCCCACC
CCAACCCAAAGGTGTGAACAAATCTGAGCGCAGGGCTCTCTCTTATATCCGGGGATTTTTTGCAA
AAAACCTTTCCAAGAAGTTCCTCGGAGAACCCCTGCGCTCGGTCAAGAACTAACTTCTGCCTCCA
AAAAAATGCGCAGCAAGCAACTTCTGCAACCTTTTTGGGGAAGAC
Right flanking sequence: Indices 130822 -- 131321
TTTAAAGTTGGGACGGGACTCCAAAAGGATCTCCGCAGAAGTTCTTCGCGCAGCGAAGAACTTCT
GGTTTCAAACAACCTTCTGCAACGGTTGGCGGGGGTTGGGGACTTCTGCTTCGCGCAGGGGAAGA
AGTGTTTAAAGTGTGCAGAAGAGACTTCTGCTTCGCGCAGGGGTTCTCCGGGGAGGGGAGGGGAG
GGGAGGGGAGGGGAGGGGACTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCGATCCGAAAA
AGATTACAGAAGTTTGTTTGTTTTCGCAGCTACCGAACCAAAAGCGCTTTCTGAGCGCAGCTACC
GGGGGAGGGGAGGGGAGGGGACCTTCTGCTTCGCGCAGCTACCGTGCCAGGCACGGCACGGGGCC
TTCTGCAAGCAAGCAACAAACAACCCGCCCGGCCCTGCAAGCAAGCAAGAAGTTTGTCGCTTACA
AAGAAACCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCTACCGTG
Found at i:131011 original size:5 final size:5
Alignment explanation
Indices: 131001--131035 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
130991 GGGGTTCTCC
131001 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
131036 CTTCTGCACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 130501 -- 131000
GAGCGTGTCACCCAATGAGTGCAAAAGTGCCTACCTTTGTAAGCGAAACAACAACCCGCCACCCC
ACCCCAACCCAAAGGTGTGAACAAATCTGAGCGCAGGGCTCTCTCTTATATCCGGGGATTTTTTG
CAAAAAACCTTTCCAAGAAGTTCCTCGGAGAACCCCTGCGCTCGGTCAAGAACTAACTTCTGCCT
CCAAAAAAATGCGCAGCAAGCAACTTCTGCAACCTTTTTGGGGAAGACCGGTTGCAGAAGTTTCT
TCGCGCAGCAAGTTCTTACCGGAGCGGTTGCAGAAGTTTCTTCGCGCAGCAAGTTCTTACCTTTA
AAGTTGGGACGGGACTCCAAAAGGATCTCCGCAGAAGTTCTTCGCGCAGCGAAGAACTTCTGGTT
TCAAACAACCTTCTGCAACGGTTGGCGGGGGTTGGGGACTTCTGCTTCGCGCAGGGGAAGAAGTG
TTTAAAGTGTGCAGAAGAGACTTCTGCTTCGCGCAGGGGTTCTCC
Right flanking sequence: Indices 131036 -- 131535
CTTCTGCACACTTTAAAGAAAGCAAGCAAGTATTCCGATCCGAAAAAGATTACAGAAGTTTGTTT
GTTTTCGCAGCTACCGAACCAAAAGCGCTTTCTGAGCGCAGCTACCGGGGGAGGGGAGGGGAGGG
GACCTTCTGCTTCGCGCAGCTACCGTGCCAGGCACGGCACGGGGCCTTCTGCAAGCAAGCAACAA
ACAACCCGCCCGGCCCTGCAAGCAAGCAAGAAGTTTGTCGCTTACAAAGAAACCAAAAGAGCTTG
CTTGCTTTCTGAGCGCAGCTACCGTGCCAGGCACGGCACGGATTGTTACAAAGGTAGGTAAGCAC
GGATAACCCGCACGAACCGCACGAATTATTTGCCCGAATTATTACAAAGGTAGGCACGGATTCAA
AGGACCTCCAGAAGGTTGGCTGGTTCTTCGCGTAGCGAAGCAGAAGTTTCCCTTCTGCCAAGAAG
GCTTGCGTGTTGAATCTTCGCGCAGGGGAATAAGTTCAGGTAGGC
Found at i:133100 original size:22 final size:22
Alignment explanation
Indices: 133072--133114 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
133062 AGAATTATTA
133072 CAAAGGTAGGTAAGCACGGATT
1 CAAAGGTAGGTAAGCACGGATT
133094 CAAAGGTAGGTAAGCACGGAT
1 CAAAGGTAGGTAAGCACGGAT
133115 CCCCTTCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.33, T:0.16
Consensus pattern (22 bp):
CAAAGGTAGGTAAGCACGGATT
Left flanking sequence: Indices 132572 -- 133071
TAGGAGGTAGAGTGGGACAACTTGGATCTCACGACAACTGTTTTGCGGCACTGCCAGCTATCCGT
GCCACGGGCCTGCCGGTAGTGCCACTACGAATGAGTGCAACCGGCTGCGGCACTTGCAATCCGTG
CCTACCTTTGTAAGCGAATGAGTGCGCAGAAACTCGGTTCGTGCCACTGTTAAAGTTGTTGGCCG
GTTGAAAGTTGATCCGTGCCTACCTTTGTAAGCGTGTGGGGGAACAAGTGGCCGACTGCTTGTAA
AAGTGCAAAAGTGGGAAGCTGGGCTGGCTTGCTTTCATCCGGAAATCCGAAAAAGAGTTGGCTTG
CTTTCTGAGCGCAGCTTTCCCCCGCCGGTTTGCCCAAAAAGTAAGTTCTTTTTGGGCAAAAGCTT
GGCAACAAACCTTGCCGCAAGCCCCAACCCAAAGTGCCGTTGCACTCATTCGAAACAGGTAGGCG
GATTGCCAGGCACTCATTCTTGCTTGCTTGCCAGGAGAATTATTA
Right flanking sequence: Indices 133115 -- 133614
CCCCTTCGAATGAGTGCCACGGTTGGGGGCCAGGCAGGCCCTTCCCCACCCCTGCCGGCTTGAAG
GTGTGAACAACCGCCCTCTTATATTCCTCTGAAGGTTGTTTGTGGGGAAAAGGTTGTTTGTTTTC
GCAGCTTTCCCCGGAACAGCGGCTGGCACGCCACTTCTTAAAATAAGATTCGTGGCGGTAAGTTT
CATTGGCACTCATAGCAACAAACAACCGCTTCTTTTCCCCCTGCGCACGAATTAACAACAGTTTG
CACGAATGAAAGCAGCGTCTTGTCTCCCGGGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGA
GGGGAGGGGAGGGGAGGGGAGGGGTCTTCCCCGGCCAGGCCAGCCCCGCCGGCTCAACCTAGGTT
ATATCCATTCCGACGCAACTCTTGCTTCCCCTTCACCGCTGCGCTCAGAACTTACTTTTGAAATC
TGTCCTGGGCAAGCAATTGGGCGGGCGGCGTCGCGGACAGGCTTT
Found at i:133413 original size:5 final size:5
Alignment explanation
Indices: 133405--133463 Score: 118
Period size: 5 Copynumber: 11.8 Consensus size: 5
133395 TGTCTCCCGG
133405 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
1 GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA GGGGA
133455 GGGGA GGGG
1 GGGGA GGGG
133464 TCTTCCCCGG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 54 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 132905 -- 133404
GCGCAGCTTTCCCCCGCCGGTTTGCCCAAAAAGTAAGTTCTTTTTGGGCAAAAGCTTGGCAACAA
ACCTTGCCGCAAGCCCCAACCCAAAGTGCCGTTGCACTCATTCGAAACAGGTAGGCGGATTGCCA
GGCACTCATTCTTGCTTGCTTGCCAGGAGAATTATTACAAAGGTAGGTAAGCACGGATTCAAAGG
TAGGTAAGCACGGATCCCCTTCGAATGAGTGCCACGGTTGGGGGCCAGGCAGGCCCTTCCCCACC
CCTGCCGGCTTGAAGGTGTGAACAACCGCCCTCTTATATTCCTCTGAAGGTTGTTTGTGGGGAAA
AGGTTGTTTGTTTTCGCAGCTTTCCCCGGAACAGCGGCTGGCACGCCACTTCTTAAAATAAGATT
CGTGGCGGTAAGTTTCATTGGCACTCATAGCAACAAACAACCGCTTCTTTTCCCCCTGCGCACGA
ATTAACAACAGTTTGCACGAATGAAAGCAGCGTCTTGTCTCCCGG
Right flanking sequence: Indices 133464 -- 133963
TCTTCCCCGGCCAGGCCAGCCCCGCCGGCTCAACCTAGGTTATATCCATTCCGACGCAACTCTTG
CTTCCCCTTCACCGCTGCGCTCAGAACTTACTTTTGAAATCTGTCCTGGGCAAGCAATTGGGCGG
GCGGCGTCGCGGACAGGCTTTGCCGGGATTGATTAAGCCGGAATTATCGCCCAAAGATCCTGTCT
TTGCAGCCCACACCTGAGAGTTAAGTTAAGTTGGAACCCGCACGCAAGAAGTTAGTCCCGCTGCG
CTCAGAAAGCAAGCAAGCAAGCGCAACCGTTCTTTTTGTTCACACCTTAAAAAAGAAGAGAGTGG
AAAGGAAAGCTGTAATTGTCTCGAACCTCATGTTCAAGGGACTGGCAAGCCGTCTCCTTCGGATA
CTCTTCGGAACCACCCTCTTGGAATAAGCTGGAAGCTTTCACCTATGCAAACATGTCTAATGTAA
GACGTGGAGTTGGGATGCACTCGCTCCTTCTCCAGAGCCCGTAAT
Found at i:134770 original size:5 final size:5
Alignment explanation
Indices: 134760--134784 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
134750 GCACAGGTTT
134760 TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC
134785 CAGAGGTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 134260 -- 134759
GAAAGTCGATGCTTCGGGCGAGGCCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGG
TACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCTCGAGTTG
CAGAGAACAATCCGAACTGAGGCAATCTTTCTGGATTCGCTCCGCCTTACGGCCTTGCTTCCCAT
TGTAATTGCCATTGTAGCACGTGTGTAGCCCAGCCCATGAGGGCCATGCGGACTTGACGTCATCC
CCACCTTCCTCCATAAGTAGACTAGGCAGGCAGTCTTTTGTGAGTGCAAACCTATTTCAACACGG
AGTGCCATCCGAAAGCCCGCCCGAGTCGGGATCCAAGTTGTCCCACTCTCCCTCCTTGACTGAAC
ACAGAACTTTGCCAGGCGGCAAGCAGGTATGTGCCTTGACCGAGCCAGAAGTTGGGGCTGCGCCC
TTCTGCGTATGTGCAGAAGGTTGTTTGTTTTCCGAGCACAGGTTT
Right flanking sequence: Indices 134785 -- 135284
CAGAGGTGGTTTGCAGGTGCAGAAGGTTGTAAGTTATCCGAGCACCGGGGCTCCTCCCCTCCCCT
CCCCTCCCCTCCCCTCCCCCGGTGGCAGGGCCCGAAGGACACTACGTTACGGGGTGCACTGCCAG
GAAATACGCAGAAGTTCCGAGCGCAGGGGTTTGAAGAGGTGGGTGCCGGCGCCCGTAACATCTTA
AGGGGTAACGGGCTTGCGGGCTACCGGGGCCGTGGGTTGCCCGGGTGGTCCGAAAAGGCAGGCCG
GGAGCCCTTCACCTCGGAGGGGAGGGGAGCCCTGCGCTCGGAACTTCTGCACATACCTGGCTGGC
ACGTGCCACTATTGCCAGTGGCTCCGCCCCTCGGGGAGGGGAGGAGAACCCCTGCGCTCGGAAAA
CAAACAACCTTCTGCACCTGGCTTATGCCGTCCCACGGTAGTGCCCTGCCAGGCTGGCGCCAAGA
GGGAAGTTTGTGGCAGCCAGCTTGGTATTGCCTTGACCGAGCCCC
Found at i:134847 original size:5 final size:5
Alignment explanation
Indices: 134837--134868 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
134827 CACCGGGGCT
134837 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
1 CCTCC CCTCC CCTCC CCTCC CCTCC CCTCC CC
134869 CGGTGGCAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.81, G:0.00, T:0.19
Consensus pattern (5 bp):
CCTCC
Left flanking sequence: Indices 134337 -- 134836
GCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCTCGAGTTGCAGAGAACAATC
CGAACTGAGGCAATCTTTCTGGATTCGCTCCGCCTTACGGCCTTGCTTCCCATTGTAATTGCCAT
TGTAGCACGTGTGTAGCCCAGCCCATGAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCC
ATAAGTAGACTAGGCAGGCAGTCTTTTGTGAGTGCAAACCTATTTCAACACGGAGTGCCATCCGA
AAGCCCGCCCGAGTCGGGATCCAAGTTGTCCCACTCTCCCTCCTTGACTGAACACAGAACTTTGC
CAGGCGGCAAGCAGGTATGTGCCTTGACCGAGCCAGAAGTTGGGGCTGCGCCCTTCTGCGTATGT
GCAGAAGGTTGTTTGTTTTCCGAGCACAGGTTTTCCCCTCCCCTCCCCTCCCCTCCCCCAGAGGT
GGTTTGCAGGTGCAGAAGGTTGTAAGTTATCCGAGCACCGGGGCT
Right flanking sequence: Indices 134869 -- 135368
CGGTGGCAGGGCCCGAAGGACACTACGTTACGGGGTGCACTGCCAGGAAATACGCAGAAGTTCCG
AGCGCAGGGGTTTGAAGAGGTGGGTGCCGGCGCCCGTAACATCTTAAGGGGTAACGGGCTTGCGG
GCTACCGGGGCCGTGGGTTGCCCGGGTGGTCCGAAAAGGCAGGCCGGGAGCCCTTCACCTCGGAG
GGGAGGGGAGCCCTGCGCTCGGAACTTCTGCACATACCTGGCTGGCACGTGCCACTATTGCCAGT
GGCTCCGCCCCTCGGGGAGGGGAGGAGAACCCCTGCGCTCGGAAAACAAACAACCTTCTGCACCT
GGCTTATGCCGTCCCACGGTAGTGCCCTGCCAGGCTGGCGCCAAGAGGGAAGTTTGTGGCAGCCA
GCTTGGTATTGCCTTGACCGAGCCCCGGGGAAGAGGTGGCAGGTATTGCCTTTACCGAGCCCCGG
GGAAGGGGCGGGCAGTGGGCAAGCAAGTTGGTGGGGAAGCTGTGT
Found at i:136014 original size:5 final size:5
Alignment explanation
Indices: 136001--136034 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
135991 CAGGACCAGT
*
136001 TCTTT TCTTC TCTTC TCTTC TCTTC TCTTC TCTT
1 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TCTT
136035 TTCAGGACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (5 bp):
TCTTC
Left flanking sequence: Indices 135501 -- 136000
GTCTTCCCTTCCCCAACTGCCTGCCTGCCGCAGAAGTTAGTTTCTGCGCGAAGCAGAGGCCCCCG
GTTTGCCTTCTGCCGGCAAACCCAAACAAACAACCCCCAGCCCCCCCCCACTCGTTCCCCCAGCT
TTGCTGAGCGCAGGGGTTCTCCCCTCCCCTCCGGGGTTTGCAGAAGTTTCAACCAACAGCAACCC
CAAACAGCCAGCCCGGCCCTTCCCCCAGCGTGCGTGCGTTTGAAGGAAAGTCGGACTTCAAACCC
CCAAGCCTCTTCCCCCAAGCATTGGGGGAAGAGAGGCAGAAGGTTGGAAGTTCTTGACCGAGCGC
AGGGAGAGGAACTTATGCGGACACTCGATTGACGCTGCCGGGTCTTTCCCTTTCCCACTCACCAC
CCATTACTAGGTGGTGGGTTGTGCCGGGCTCGCTCGTCGGAACCACACAGGATTTGCGTTACGCG
CGCGCAAAAGCGCTCCCCCGCGCGCGCTTCTTCCCCAGGACCAGT
Right flanking sequence: Indices 136035 -- 136534
TTCAGGACCAGCTTTTCCCGCAGGGTTCCTCGGAGGGGAGGGGAGAAACCCTGCGCTCGGAGAAC
TTCTGCCTGCTGGCTTTGTAAAGTAAAGTGGGGGAGTTTGCCTGCCATTGATCGCTTGCCAGGTG
GCCTTCGGCCGCGGGGGAAGCGCTAAGCCCGCCTGCCAGCGGGGTTGTGAAGGGCTGGCATTAAA
CAGTGCCGCAGGGGAATAAGTTGTTTGTTTGTTGCGGGTTGGTTGCGGGGGAAGCGGTGCGGGGG
AAGCGGTGGTTTGGGGAAGCGCTAAGGAAAGCAGGTCGGTTTGCCGCGGCCGTTCTATGAAAGTA
GTTTCTGCGGATGATGGCATTGATCCTTCGAAAGCAGCATGTCTTAGCAACACAAAACGAGGGTT
TCGCTCGTTATAGGAGTTAACCAAAAACGTCTCACGACACGAGCTGACGACAGCCATGCAGCACC
TGTATGAATTTTCGTTTCATCCTGTTAAGGACAAGCACACTTGTC
Found at i:136292 original size:14 final size:14
Alignment explanation
Indices: 136273--136302 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
136263 GCGGGTTGGT
136273 TGCGGGGGAAGCGG
1 TGCGGGGGAAGCGG
136287 TGCGGGGGAAGCGG
1 TGCGGGGGAAGCGG
136301 TG
1 TG
136303 GTTTGGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.63, T:0.10
Consensus pattern (14 bp):
TGCGGGGGAAGCGG
Left flanking sequence: Indices 135773 -- 136272
CCCCAAGCATTGGGGGAAGAGAGGCAGAAGGTTGGAAGTTCTTGACCGAGCGCAGGGAGAGGAAC
TTATGCGGACACTCGATTGACGCTGCCGGGTCTTTCCCTTTCCCACTCACCACCCATTACTAGGT
GGTGGGTTGTGCCGGGCTCGCTCGTCGGAACCACACAGGATTTGCGTTACGCGCGCGCAAAAGCG
CTCCCCCGCGCGCGCTTCTTCCCCAGGACCAGTTCTTTTCTTCTCTTCTCTTCTCTTCTCTTCTC
TTTTCAGGACCAGCTTTTCCCGCAGGGTTCCTCGGAGGGGAGGGGAGAAACCCTGCGCTCGGAGA
ACTTCTGCCTGCTGGCTTTGTAAAGTAAAGTGGGGGAGTTTGCCTGCCATTGATCGCTTGCCAGG
TGGCCTTCGGCCGCGGGGGAAGCGCTAAGCCCGCCTGCCAGCGGGGTTGTGAAGGGCTGGCATTA
AACAGTGCCGCAGGGGAATAAGTTGTTTGTTTGTTGCGGGTTGGT
Right flanking sequence: Indices 136303 -- 136802
GTTTGGGGAAGCGCTAAGGAAAGCAGGTCGGTTTGCCGCGGCCGTTCTATGAAAGTAGTTTCTGC
GGATGATGGCATTGATCCTTCGAAAGCAGCATGTCTTAGCAACACAAAACGAGGGTTTCGCTCGT
TATAGGAGTTAACCAAAAACGTCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAA
TTTTCGTTTCATCCTGTTAAGGACAAGCACACTTGTCACTTGTTCATAGGTCAAGTGTTCATATG
TCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGG
CCCCCGTCGATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTAACGCGT
TAGCTGGGCCCCCGATCAAACGCTTGCAGACCAAGGACGAACACTCATCGTTTACGGCATGGACT
ACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCA
Found at i:136556 original size:15 final size:15
Alignment explanation
Indices: 136538--136567 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
136528 ACTTGTCACT
136538 TGTTCATAGGTCAAG
1 TGTTCATAGGTCAAG
*
136553 TGTTCATATGTCAAG
1 TGTTCATAGGTCAAG
136568 GGCTGGTAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (15 bp):
TGTTCATAGGTCAAG
Left flanking sequence: Indices 136038 -- 136537
AGGACCAGCTTTTCCCGCAGGGTTCCTCGGAGGGGAGGGGAGAAACCCTGCGCTCGGAGAACTTC
TGCCTGCTGGCTTTGTAAAGTAAAGTGGGGGAGTTTGCCTGCCATTGATCGCTTGCCAGGTGGCC
TTCGGCCGCGGGGGAAGCGCTAAGCCCGCCTGCCAGCGGGGTTGTGAAGGGCTGGCATTAAACAG
TGCCGCAGGGGAATAAGTTGTTTGTTTGTTGCGGGTTGGTTGCGGGGGAAGCGGTGCGGGGGAAG
CGGTGGTTTGGGGAAGCGCTAAGGAAAGCAGGTCGGTTTGCCGCGGCCGTTCTATGAAAGTAGTT
TCTGCGGATGATGGCATTGATCCTTCGAAAGCAGCATGTCTTAGCAACACAAAACGAGGGTTTCG
CTCGTTATAGGAGTTAACCAAAAACGTCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGT
ATGAATTTTCGTTTCATCCTGTTAAGGACAAGCACACTTGTCACT
Right flanking sequence: Indices 136568 -- 137067
GGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCC
GTCGATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTAACGCGTTAGCT
GGGCCCCCGATCAAACGCTTGCAGACCAAGGACGAACACTCATCGTTTACGGCATGGACTACCAG
GGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCAGTAGAGACCCAGAGAGCTG
CCTTCGCTATTTCGGCGTTCCTTCGTATATCTCCGGATTTTATCCCTACACACGAAATTCCACTC
TCCTCTATCTCACTCAAGTGAATTGGTTTTGAAAGCATTCCGCCGGTTGAGCTGGCGCCTTTCAC
TTTCAACCTGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAATAACACTTGCCCCCC
CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTC
Found at i:139562 original size:4 final size:4
Alignment explanation
Indices: 139553--139616 Score: 128
Period size: 4 Copynumber: 16.0 Consensus size: 4
139543 AGCGAACTTT
139553 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC TTGC
139601 TTGC TTGC TTGC TTGC
1 TTGC TTGC TTGC TTGC
139617 CCCCTTTTCC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 60 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (4 bp):
TTGC
Left flanking sequence: Indices 139053 -- 139552
GGTCAAGGTATGTGCCTTGGATAAGACCAGTTGCCGGCCCTCATTCAAAGTGGTGCCGCACGAAT
GTTCAGGCCCCGTGCCACTTGCCAGAAGTGGCCAGGTTTAGAAGTCCTCGGATCCCTTGGATCCC
AGAGCAGAGGAGTAGTGGCGAGGGAAGAAAGGAGGATGGAAAACCACGTTCGACTTGCATGTGTT
AAGCATATCGCTAGCGTTCATTCTGAGCCAGGATCAAACTCGGTTTTTTGGGTACCGGTGCGGTT
CCGGATGAAGACTGACTGAATCATAAATACGAGAATTGGTTTGACTCGATGCCCATACTTCCGAG
CCGAGCGAGAGCCACTGAGATATAGAAGCGATTGAATCCAGAGGTATGTTTGGAGGTTGGTTTGT
AAGCTGGTGCAGCCTCTGTGGCCTATGCACCAGAATTGCAGTGGGGAAGAAGCAGGCAGGCTTCA
ACAAATAAATTATAAAGTAAAGCAGTCCGCAACAAAGCGAACTTT
Right flanking sequence: Indices 139617 -- 140116
CCCCTTTTCCCAGCCAAGCCCAGCCCACCCCAGCCGAGGTATGTATGAAAGCCGGTCCCAAGTCG
TCTTAGCCCTATCCCAGCTGGGCAGTTTTGGTCCCGGGTTAAGGTTCACTTCTAAACCCCGTGCC
AGCCAAAAAGAACCAAAAGCGCTTGCTTTCTGAGCGCAGGGGAAGGGGGGCCGACCCCCCATCTT
TTGCTTGCCGGGGGTACCTCTCTCACTATCCTTTGTGCCGGGGTTGAAGGGCTGCGTTAGGCTGC
AACTTTAAAGATCGGTGCCCGATTCCCAGATGGCAGTTGGCTGTTGGTCATGCTTGTTGGCTTAG
CTATCGAACTCACCGTTCCCCCAGCGCCAGCCGATGGCTTGCTTGCAAGCAGAAGTTGCCAGCCA
AAGAAGTTCTGTTAAAAAGCAAGCCGCCAAAACTGACTGAGCAGCCCGCCCAAGCAGCCCATAAC
TTAACTTCGCGCGCGCGGGGTGCTTGCTTAAATGCCGTGCCGTTT
Found at i:140427 original size:5 final size:5
Alignment explanation
Indices: 140419--140452 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
140409 GGGAAGTTCC
140419 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGG
1 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA AGGG
140453 TAACTTTTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (5 bp):
AGGGA
Left flanking sequence: Indices 139919 -- 140418
GTTGGTCATGCTTGTTGGCTTAGCTATCGAACTCACCGTTCCCCCAGCGCCAGCCGATGGCTTGC
TTGCAAGCAGAAGTTGCCAGCCAAAGAAGTTCTGTTAAAAAGCAAGCCGCCAAAACTGACTGAGC
AGCCCGCCCAAGCAGCCCATAACTTAACTTCGCGCGCGCGGGGTGCTTGCTTAAATGCCGTGCCG
TTTCCAGAAGTTGTTTGAATGAGGTTTGCAGAAGGTTGGCGAGCCAGGAGTTGGGGCTGCGGGGG
AAGCAGAAGAACTTCCCACCTCTTCCCCAGGTATGTGCCTTTACCGAGGGGTTCTCCTCACAAAC
TTCAGAGGGATATAAGAGAGAGGAACGGCCCTGCGCTCGGTCAAGGTATGTGCCTTCTGCAACTG
TATGTGCAGAAGGGTGTAAGTTCTCCTCCCCCGCGAGAACTTCCAACCTTTTCCCCTGCGTTGGC
AGAAGGTTGGAAGTTCTTGACCGAGCACCGGGGAAGGGAAGTTCC
Right flanking sequence: Indices 140453 -- 140952
TAACTTTTCCCCACAAACAACCAACCTTCAGAGTAATATAAGAGGGAGGTGGCAGGGCCTGCCTT
TTCTCCGTGCCAGCCTACAAGCCAGCCTTTTTGGGTCCTGGCACGGGGGAAAGCTGCGCTCAGAT
TCAAACAACCAACAACCTTTTGCAACCCTTCTGCACACCTTGGATCCAACAACAAACAACCCTTC
TGCCGAGCTTCTGCCGAAGTTACAAAGGTAGGCTGGCACGGATTGCCTGCCAACCGCTTCCCCCG
CCAACCCGCACAAACAACCAACCGCCACTTTTTTTTAAAGTGGCTTTCCCGCAAACCAACTGTTA
ACCTGCATACCAGGTATGTGCAGAAGGTTGTTTGTTTTCCGAGCGCAGGTATGTGCAGAAGGGTG
GCGTGTTCTCCGAGCGCAGCGAGCAGAAGTTATTTCCCCCTGCGGGAATAGGTGGCAACCCGGGG
GAAGCTGTTGGGTTAGCAGCTGGTTGTAATACCTTTACCGAGCGC
Found at i:141010 original size:5 final size:5
Alignment explanation
Indices: 141000--141029 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
140990 TGCGCAGCTT
141000 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
141030 CGTGCGGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 140500 -- 140999
GGTGGCAGGGCCTGCCTTTTCTCCGTGCCAGCCTACAAGCCAGCCTTTTTGGGTCCTGGCACGGG
GGAAAGCTGCGCTCAGATTCAAACAACCAACAACCTTTTGCAACCCTTCTGCACACCTTGGATCC
AACAACAAACAACCCTTCTGCCGAGCTTCTGCCGAAGTTACAAAGGTAGGCTGGCACGGATTGCC
TGCCAACCGCTTCCCCCGCCAACCCGCACAAACAACCAACCGCCACTTTTTTTTAAAGTGGCTTT
CCCGCAAACCAACTGTTAACCTGCATACCAGGTATGTGCAGAAGGTTGTTTGTTTTCCGAGCGCA
GGTATGTGCAGAAGGGTGGCGTGTTCTCCGAGCGCAGCGAGCAGAAGTTATTTCCCCCTGCGGGA
ATAGGTGGCAACCCGGGGGAAGCTGTTGGGTTAGCAGCTGGTTGTAATACCTTTACCGAGCGCAG
GTCTTCCCCCAGAGGTGGCAGGGTGTTTGAACTTCTGCGCAGCTT
Right flanking sequence: Indices 141030 -- 141529
CGTGCGGGGGCTTTGAAGCGGCACGGACCTTTGGCACGAATAGCAACAAACAACCAACCAAACAA
CAAACCTTCTGCGCCAAACCGCAAGCAACTTTAAAGAAACTAACTTCCAACTTGCTTGCTTTCAT
TGGCACTCACAGCAACCTTTTGCACGAATGAAAGCAAAACAGTGTGAGATCTGTCCCACAACTGC
GTGAAGGGGAAGAAGCTGGCTGCTTTTGCCCGACTGGACGGACGCACTCATTCGTAGTGGCACGG
AGAACTTCGTGCAACCTCGTGCTAAGATTCTATAAAAAGTGGCAAGCAAGCCGAGAAGCCAAGCC
AGCCTTTTGTTCCGATTAGGCACTGAGACCAAGCTACTCCGCTCCGGGGCGATTCAGCTATGGGA
GATCGATCTCATGGGTCCCGGGACAGCCTTAGGTATGTGCAGAAGTTTTCCGAGCGCAGGGGAAG
AGGTGGCAGGGGAGTGTGGATTGAAAGCCAAGGGGATCCAAGTTA
Found at i:142029 original size:4 final size:4
Alignment explanation
Indices: 142020--142113 Score: 188
Period size: 4 Copynumber: 23.5 Consensus size: 4
142010 GACCTTTAAA
142020 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC
142068 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AA
1 AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AAGC AA
142114 AAGTCTTGGT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 90 1.00
ACGTcount: A:0.51, C:0.24, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGC
Left flanking sequence: Indices 141520 -- 142019
ATCCAAGTTAGAAGTAGCGCTTTCTCGACCCCGGAGCAGGGCAGAAGTAGCGCCGTCTCCGCGAA
TTCCTTCACTTCGCTGCGCATTACCCGAGTGGAGGTCTTCCCCAAAAAAAAGGTTGCAGCCTTTT
TATAGTTCTTCTGCAAGAAGCAGATCTTTGTTTGCAGCCAGCAAAAAGTCCCCGGCCCCCCCTGC
TTGCTTTTCCCGCTGCGCATTACCCTTTTTGGAGGCAAAAAGAGAGTTGGTTGGGTGGGTTGCAG
GCAGTTAGCTTGCGGTGTTGCAGGCAGGTGAACAACCCAACCCTTCTGGGCGGTTGTTTGAACAG
AAGTTCTTCTGCTGCGCTCAGAACTAACTCTTTTTTTGTTCACACCTTAAAAGTTAATAAATAAA
GAAAGAAAGCAAGCAAGCAAGCAAGAGGCACGGCACGGCTTTATATAGAGAAAGCCAAGTTAGAA
GTAGCGCTTTCAATCCACCCTCTATATACGTGATTGACCTTTAAA
Right flanking sequence: Indices 142114 -- 142613
AAGTCTTGGTCAATCACGGAGCAGCCAGGCCAGCTTTATATAGAGAAAGCGCGACTTCTAACCAC
CCACCTTGGAAGTTAGTTTCAATCCGGGGGGGCCACCTGGCTGAAACAGCAACCAACTCCGTGCA
AGCCTACCTTTGTAACTTTTTGGGCCAACTCCTCGGGGAAGCGCCACGAAGAACCCTTTTGCACG
AATGAACCGGTATCCCTGAAGCACTTCTAAAAGTGCGTGCAAAAGTATCATTCGAACCTTAAAGG
TTGGTTGTTCGGCAAGCCCAAAAAGTTACAAAGGTAGGCTGGCACGGGGGAAAACAACCAACCTT
TTCGGCCACTTCGAATGAGTGCAGATAGGAGGGATCCAAGTCCAGGGTCAAACTTGGATCCCGAC
GTGGGGGAAAAGGAGGGAGAGTGGGACAACTTGGATCCCGACAACTCGGATCCCAAAGGTCTTAC
CTTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCGAGGCTTTAGA
Found at i:142548 original size:15 final size:15
Alignment explanation
Indices: 142528--142557 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
142518 GGGAGAGTGG
*
142528 GACAACTTGGATCCC
1 GACAACTCGGATCCC
142543 GACAACTCGGATCCC
1 GACAACTCGGATCCC
142558 AAAGGTCTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.37, G:0.20, T:0.17
Consensus pattern (15 bp):
GACAACTCGGATCCC
Left flanking sequence: Indices 142028 -- 142527
AAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCA
AGCAAGCAAGCAAGCAAGCAAAAGTCTTGGTCAATCACGGAGCAGCCAGGCCAGCTTTATATAGA
GAAAGCGCGACTTCTAACCACCCACCTTGGAAGTTAGTTTCAATCCGGGGGGGCCACCTGGCTGA
AACAGCAACCAACTCCGTGCAAGCCTACCTTTGTAACTTTTTGGGCCAACTCCTCGGGGAAGCGC
CACGAAGAACCCTTTTGCACGAATGAACCGGTATCCCTGAAGCACTTCTAAAAGTGCGTGCAAAA
GTATCATTCGAACCTTAAAGGTTGGTTGTTCGGCAAGCCCAAAAAGTTACAAAGGTAGGCTGGCA
CGGGGGAAAACAACCAACCTTTTCGGCCACTTCGAATGAGTGCAGATAGGAGGGATCCAAGTCCA
GGGTCAAACTTGGATCCCGACGTGGGGGAAAAGGAGGGAGAGTGG
Right flanking sequence: Indices 142558 -- 143057
AAAGGTCTTACCTTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCGAGGCTTTAGAAGGTCTTAC
CCTTACCGAGCGCAGGGGTTCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCGAGGCT
TTAGAAGGTCTTACCCTTACCGAGCGCAGGGGAAGAGGTGAAGGGTTCTTCGTGCCACAGTTTTC
GTGGCCTTCCCCCGTTTGCAAAAGTGCAAAAGTTTCATTCGTGCCACTGGGGTGCCACAGTTCTC
GTGGCCAAACAAACTCATTCCCTCATTCTTCGTGGCCCCAAAGGTTGTTGCACGAATGAAAGCAG
CCAACCCACAAACTCATTCTATAAAAAGTGGCAAGCAAGCAAAAGCCAAAAGGTTGGTTGTTCTT
CGTGCCCAGGGGAAAAGGTTGTTTGAATGAGGGCCAATGAGGGAAGGAGGGAGAGTGGCTCCTTG
GATCCCGACAACTTTTAACACCGCACGGATTTAAAGCAACTGGAT
Found at i:142653 original size:5 final size:5
Alignment explanation
Indices: 142643--142681 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
142633 CGCAGGGGTT
142643 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCC
142682 GAGGCTTTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.00, C:0.79, G:0.00, T:0.21
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 142143 -- 142642
CCAGCTTTATATAGAGAAAGCGCGACTTCTAACCACCCACCTTGGAAGTTAGTTTCAATCCGGGG
GGGCCACCTGGCTGAAACAGCAACCAACTCCGTGCAAGCCTACCTTTGTAACTTTTTGGGCCAAC
TCCTCGGGGAAGCGCCACGAAGAACCCTTTTGCACGAATGAACCGGTATCCCTGAAGCACTTCTA
AAAGTGCGTGCAAAAGTATCATTCGAACCTTAAAGGTTGGTTGTTCGGCAAGCCCAAAAAGTTAC
AAAGGTAGGCTGGCACGGGGGAAAACAACCAACCTTTTCGGCCACTTCGAATGAGTGCAGATAGG
AGGGATCCAAGTCCAGGGTCAAACTTGGATCCCGACGTGGGGGAAAAGGAGGGAGAGTGGGACAA
CTTGGATCCCGACAACTCGGATCCCAAAGGTCTTACCTTTACCGAGCGCAGGGGTTCTCCCCTCC
CCTCCGAGGCTTTAGAAGGTCTTACCCTTACCGAGCGCAGGGGTT
Right flanking sequence: Indices 142682 -- 143181
GAGGCTTTAGAAGGTCTTACCCTTACCGAGCGCAGGGGAAGAGGTGAAGGGTTCTTCGTGCCACA
GTTTTCGTGGCCTTCCCCCGTTTGCAAAAGTGCAAAAGTTTCATTCGTGCCACTGGGGTGCCACA
GTTCTCGTGGCCAAACAAACTCATTCCCTCATTCTTCGTGGCCCCAAAGGTTGTTGCACGAATGA
AAGCAGCCAACCCACAAACTCATTCTATAAAAAGTGGCAAGCAAGCAAAAGCCAAAAGGTTGGTT
GTTCTTCGTGCCCAGGGGAAAAGGTTGTTTGAATGAGGGCCAATGAGGGAAGGAGGGAGAGTGGC
TCCTTGGATCCCGACAACTTTTAACACCGCACGGATTTAAAGCAACTGGATCCAAGGACGGATTT
CCAAAAGTCCTGAGCGCAGCGAAGAACTTCTTGTGCCACTTCGAATTTTAACGGGCCAATGAGAG
GTTAGGTTTTTGTTGGCCTGAAAGGTTGGTTGTTGATCCGTGCCT
Found at i:143916 original size:5 final size:5
Alignment explanation
Indices: 143906--143932 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
143896 CAGGGGAAAA
143906 GGTTG GGTTG GGTTG GGTTG GGTTG GG
1 GGTTG GGTTG GGTTG GGTTG GGTTG GG
143933 AACTTCTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37
Consensus pattern (5 bp):
GGTTG
Left flanking sequence: Indices 143406 -- 143905
CCTTCTGCACATACAGTTGCAGAAGGCACATACCTTGACCGAGCGCAGGGGAAGAGGTGGGAAGT
TCTTCTGCTTCCCCCGCAGCCCCAACTCCTGGCTCGGTCAAGAACTTCCAAACAACCTTCTGCCT
CCCTCTTATATTACTCTGAAGGTTGGTTGTTTGTGGGGAAAAGGTTCCCTCATTCTTTGAAAGTG
CAACGGCCTGGCCGAAAAGTCCCGTGCCTACCTTTGTAATTTCGAAACTCTTCGTGCAGAAGGGT
TGCAAGTTTCAAGTTGGTTGCAGAGCAGAGCAGACAGTTGTTCCAAGGACCAAGAACTTCTGCGG
GTTGTTCTTCGCGCAGGGGAATAAGTTCAGGTGTGCAGAAGGGTTGCAAAAGGTTGTTGGTTGTT
TGAATCTTCGCGCAGCGAAGCAGAAGTTCACACAAACAACCCTTCTGCTTTCCAACAACCAACCA
GAAGGTCACCTGCCTGCAACACCGCTTTTTGGACGCAGGGGAAAA
Right flanking sequence: Indices 143933 -- 144432
AACTTCTGCTTCGCGCAGCGAAGAACTTCTGCTTCCAAAAAGAGAGTTAGTTCTGAGCGCACCCA
CAACTTTTTGGGGAAGACCTCCAAAAAAATGCGCAGCGAAGCAGAAGTTCACACAAACAACCCTT
CTGCTTTCAAACAACCAACCAGAAGGTCACCTGCCTGCAACACCGCTTTTTGGACTTCCAAAAAG
CAGGCAGAAGGTTGGTTGTTTGAAAGCAGAAGAACTTCTGCTTCTGAGCGCAGCAGAAGGACTTC
TGGTTTCAAACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACACCCCCCTCCTGCCACC
TCTGGAAACCCCTGCGCTCGGTCAAGAACTTCCAAACAACCTTCTGCAACCCGGACCGAAAGGGG
GCGGGCGGCTGATCTTCTGCAAGAAGTTCTTCGCGCAGCCCCCACGCTTTCTTTTTGGACCTCCC
AACTTTAAAGCTAGCTTTAAAGTAAGTTGGGAAGAGCTTCGCGCA
Found at i:144577 original size:12 final size:12
Alignment explanation
Indices: 144560--144588 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
144550 TTGCTCCCAA
144560 CTTTCGAACTTT
1 CTTTCGAACTTT
144572 CTTTCGAACTTT
1 CTTTCGAACTTT
144584 CTTTC
1 CTTTC
144589 TTTTTGGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.28, G:0.07, T:0.52
Consensus pattern (12 bp):
CTTTCGAACTTT
Left flanking sequence: Indices 144060 -- 144559
CTTCTGCTTTCAAACAACCAACCAGAAGGTCACCTGCCTGCAACACCGCTTTTTGGACTTCCAAA
AAGCAGGCAGAAGGTTGGTTGTTTGAAAGCAGAAGAACTTCTGCTTCTGAGCGCAGCAGAAGGAC
TTCTGGTTTCAAACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACACCCCCCTCCTGCC
ACCTCTGGAAACCCCTGCGCTCGGTCAAGAACTTCCAAACAACCTTCTGCAACCCGGACCGAAAG
GGGGCGGGCGGCTGATCTTCTGCAAGAAGTTCTTCGCGCAGCCCCCACGCTTTCTTTTTGGACCT
CCCAACTTTAAAGCTAGCTTTAAAGTAAGTTGGGAAGAGCTTCGCGCAGCGGGGAAGAGCAAGAA
AGATCCCTTTTTTTAGGACCAAGAAAGGGGCGGGCGGAAGTTAGTCTCTTCTGCTTCCAAAAGAA
CGCGCAGCAGAAGTTAGTTTCTTCTGCAAGAAAGCTTGCTCCCAA
Right flanking sequence: Indices 144589 -- 145088
TTTTTGGGAAGAGCTTCTCCTTCACCCGCGCAGGGGGAAGGGGTGGAAAAGAACTTCTGCTTTCA
AACAACCAGAAGGTCACCTGCCTGCAACACCGCAAACAACACCCCCACTCCTGCCACCTCTGGAA
ACCCCTGCGCTCGGTCAAGAACTTCCAAACAACCTTCTGCAACCAGGGGAAAAGGTTGGACGGAT
TTCAAAAAAAGAGTGCAACTTCTGCGGTTTGGTTGGGTTGGGTTGAAAGTTGGTTTCGCAGCTAC
CGTGAAGGTGTCCCACTCTCCCTCATTCCCTCATTCAAACGGCCTTTTCCCCTGGGCACGAAGTT
AAGCTTTACGGGTTTTACCAGGCTTAGTTCTCCTACTTCAGAGGAATATAAGGGGACACTCTTAA
GTAAGACCGGGGCGGTGACTGGGAAGAGGCTGTCACCTGGACGGCCTGGGAAAAGCCAAAGTTCG
CCCTGTCACGCTAAAGATTTCGTGAAAAAGAGGGCCAGCACTTCC
Found at i:145644 original size:19 final size:19
Alignment explanation
Indices: 145605--145645 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
145595 ACATATATCG
**
145605 ATAGATATATAGCATCTAT
1 ATAGATATATAGCATAGAT
145624 ATAGATATATAGCATAGAT
1 ATAGATATATAGCATAGAT
145643 ATA
1 ATA
145646 TCCGGAGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (19 bp):
ATAGATATATAGCATAGAT
Left flanking sequence: Indices 145105 -- 145604
CTGTTATTGATACCTACGTAGACCACCAAAAAAGATCGGTCGAAGTCGGGGTTTAGGTTGCCCTT
TCGTGAATGGGACACGTGGATGGAAAGCATACGGGTTGTATCATACTTGTGATGGTACCAAGCAG
TCTTAGTGGAGCAATGACCTATGTAAGCAATCACCTGTGAATGGTACCAAGCAGTATGGTGTGAA
GTCATCCACCCGGCAATCCAATCCGAAGGTTATCTTCTCTCTGTTCTCTCCTCTCCGGGCATCAC
GGAATACTTTTTCTGATAAGAGCAGTTAAGAACTTAACTGCTGGACAAATAATAGCCATTACTTA
AAGGCTGCACTTCGCCGGCAAGGAGCAACAACTGAACCGGGACTACCTACTGCGCGACGAGGCTG
GGGAACTCCAGTCATGTTACCAATTACCCCAGGATGCGAAATCTTAGAGAACTGCACTATACAGG
CAACCACATAGATATAGAGATGTCTCTATATATCTACATATATCG
Right flanking sequence: Indices 145646 -- 146145
TCCGGAGCCTAGATGGCTGGCCCCCCGGACCGGAGCCCTGGCACTTCGTGCCACTATAAAAGTGG
CAAGCAAGCAACTTCTGCCCAATGAGTGCAGAAGTTGCTTGCAGAAGGTTCTTTCCCCCGTGCCT
ACCTGAACTTATTCCCCTGCGCGAAGCAGAAGTTCCAACCCGCCCAACAAGAACTTCGCTGCGCG
AAGCAGAAGTTCCAACCAAACTTCTGCCGGCAAACCCTTTGTAAGTAATTTCAGTGGCACAAACA
AACAACTTTACCTTATTCCCACGTGCCACTGAAAGTTACTTACTTTTCGTGCGCAGGGGAAAAGT
TGCTATCCGTGCCAGCCTACCTTAAAGGGTGTTCTTCGCTGCGAAAGCAGCCGAGCCGTTGGTTG
GCACTCTTTTTTTGCCTTCACGTAGCTGCGCGGAGAACCAGCCAACCACCCAGGCAGAAGTTCCT
CTTCCCCTGCGCTCGGTAAAGGTATTACCTTTGTAAGTTTCGAAT
Found at i:146301 original size:6 final size:6
Alignment explanation
Indices: 146290--146314 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
146280 CAGATTTCAA
146290 CAACTT CAACTT CAACTT CAACTT C
1 CAACTT CAACTT CAACTT CAACTT C
146315 TTAGTTCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (6 bp):
CAACTT
Left flanking sequence: Indices 145790 -- 146289
CCCTGCGCGAAGCAGAAGTTCCAACCCGCCCAACAAGAACTTCGCTGCGCGAAGCAGAAGTTCCA
ACCAAACTTCTGCCGGCAAACCCTTTGTAAGTAATTTCAGTGGCACAAACAAACAACTTTACCTT
ATTCCCACGTGCCACTGAAAGTTACTTACTTTTCGTGCGCAGGGGAAAAGTTGCTATCCGTGCCA
GCCTACCTTAAAGGGTGTTCTTCGCTGCGAAAGCAGCCGAGCCGTTGGTTGGCACTCTTTTTTTG
CCTTCACGTAGCTGCGCGGAGAACCAGCCAACCACCCAGGCAGAAGTTCCTCTTCCCCTGCGCTC
GGTAAAGGTATTACCTTTGTAAGTTTCGAATGAGTGCGCAGGGGAAAAGTTGCTATCCGCCTACC
TTTGTAAGTAATTTCAGTGGCCGAATTGTAGGGTGTTTCGCTTACAAAGGTAGGCACGGGTGTGG
GAAACAACCTGGCACGGCCAGGCCATCTTTTAGGACAGATTTCAA
Right flanking sequence: Indices 146315 -- 146814
TTAGTTCTGAGCGTAGCGAAGCAGAAGATCTTGCACGGATAGCAACTTTTCCCCTGCGCACGAAA
AGGCAGGTAGGCACGGACCTTTGGCACGAATCAACAGTTTGCCAAACAAACTCATTGGCCCTCAG
ACCCGGCAGATGTGCAACCACCCTCTCCTTCCCCAGCTTCTGCCGGCTGGTTACCAAAGGCACAT
ACCTTGACCGAGCGCAGGGGAAGAGGAACTTCTGCGGGGGAGGCCCCGGCTAAAGAGTAAAGGTT
CTTTAGCCCCTCCCCTCCCCTTACAAGTTGGGAATCGACGTCTAACGCGTTTAGTGTTGTGTTCC
CTTTTGCCACTTCTTGGGGGAAGGCCCTTCCCCTCCCCTCCCCAAAGGTGTGAACAAAAGAATCT
GAGCGCAGCGAAGAACTTCTGGTTCTAACTTTCTTTAATTTAAGGTGTGAACAAAAAGTGCGGGT
TGTAAAGAAGTTCTTCTGCGCAGCAGAAGAATCTGGAAGAGACTT
Found at i:148463 original size:5 final size:5
Alignment explanation
Indices: 148453--148595 Score: 142
Period size: 5 Copynumber: 27.8 Consensus size: 5
148443 TCAATAGAGG
* ** *
148453 CCCTT CCCTT CCCTT CCCTT CCCTGG AACTT CCCTT CCCTT CCCTT CCCTGG
1 CCCTT CCCTT CCCTT CCCTT CCCT-T CCCTT CCCTT CCCTT CCCTT CCCT-T
** * ** * **
148505 AACTT CCCTT CCCTT CCCTT CCCTGG AACTT CCCTT CCCTT CCCTGG AACTT
1 CCCTT CCCTT CCCTT CCCTT CCCT-T CCCTT CCCTT CCCTT CCCT-T CCCTT
148557 CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCCT
1 CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCCTT CCCT
148596 GGAACGGAAC
Statistics
Matches: 110, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
5 102 0.93
6 8 0.07
ACGTcount: A:0.06, C:0.53, G:0.06, T:0.36
Consensus pattern (5 bp):
CCCTT
Left flanking sequence: Indices 147953 -- 148452
CGATCTTCTTGATTAGCCGAGATTAGCCACTTTTACCCGTGGCAAACTGGCAAAGTCGGGATCCA
AGTTGTCCCACTCTCCCTCCTAGTTCCTGGTTCTGACCTTTTACAAAGTTCTACCCTTTCGAGTC
AGAGGTTATGCTGGAAGGTGCCAAATCAATTGGAGCAGGAGCCGCTACCATGGCTTTAGCGGGAG
CTGCAGTAGGTATTGGACACGCATCTAGTTCTTCGATCACTCCCGTGGCACGAAATCCTTCCTTG
GCTAAACAATCATTCGGTTATGCCATTTCAGGATTTGCTTTAACAGAAGCTATTGCCTCGTTTGC
CTCAATGATGGCCTTTTCAATCTTATTCGTATTTCGAGAAGAGGTGCCAAAGCACCTCGGGGGGT
TTCAGGGGGGGTCCGAAAGGGCCCCCTTTTACCCTTTCGAAAGACGGGATACTTTAAAAAAAGAG
AGTTGAATTGGCGGGTCAACTCGATCGGCTCGAAATCAATAGAGG
Right flanking sequence: Indices 148596 -- 149095
GGAACGGAACCTTCCCTCACGCAGCCGCTTTCGGGGTATTACCCAAAGCCGAAGCCAAGAAAGAC
TCGGGCTGGCTTTTCCGCTTGCGATTAATAGATTAGCCAAATATGCTTGCATCGATATAGCTTTG
AAGTTATCAACGATAACTGAAGTTATCGGAGTCGAATGCCTATCAATTTCCACGATAGATGCTGA
ACACTCCTGTCCTGAGAGAACTTCAAGAAGTCCCGTTCTTTATTATTTCCGAGCGAAGCCAACCG
CTATTTCAGAGTAATAGTGGTAAGCGGGTTATTCATAAGATTGAGTGAATGATGCAGGCCGTGTG
AACAAAAAAAGAGTGCAAATCAAATAAGTTCGCTTGCTTTCGCAGCAGGCTTCTGCTGCCAAACA
ATTCTTCTGCACACTTTAAAGCAAGCAAGTTGGTTTGGACCTCCAAAACAAAACAAAACAAAACA
AAACAAAACAAAACAAAACAAAACAAAACAAAAGTTTGCAGAAGA
Found at i:148491 original size:26 final size:26
Alignment explanation
Indices: 148455--148600 Score: 215
Period size: 26 Copynumber: 6.0 Consensus size: 26
148445 AATAGAGGCC
148455 CTTCCCTTCCCTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTTCCCTTCCCTGGAA
148481 CTTCCCTTCCCTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTTCCCTTCCCTGGAA
148507 CTTCCCTTCCCTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTTCCCTTCCCTGGAA
148533 -----CTTCCCTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTTCCCTTCCCTGGAA
148554 CTTCCCTTCCCTTCCCTT-CC-----
1 CTTCCCTTCCCTTCCCTTCCCTGGAA
148574 CTTCCCTTCCCTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTTCCCTTCCCTGGAA
148600 C
1 C
148601 GGAACCTTCC
Statistics
Matches: 109, Mismatches: 0, Indels: 22
0.83 0.00 0.17
Matches are distributed among these distances:
20 18 0.17
21 23 0.21
25 2 0.02
26 66 0.61
ACGTcount: A:0.07, C:0.51, G:0.07, T:0.35
Consensus pattern (26 bp):
CTTCCCTTCCCTTCCCTTCCCTGGAA
Left flanking sequence: Indices 147955 -- 148454
ATCTTCTTGATTAGCCGAGATTAGCCACTTTTACCCGTGGCAAACTGGCAAAGTCGGGATCCAAG
TTGTCCCACTCTCCCTCCTAGTTCCTGGTTCTGACCTTTTACAAAGTTCTACCCTTTCGAGTCAG
AGGTTATGCTGGAAGGTGCCAAATCAATTGGAGCAGGAGCCGCTACCATGGCTTTAGCGGGAGCT
GCAGTAGGTATTGGACACGCATCTAGTTCTTCGATCACTCCCGTGGCACGAAATCCTTCCTTGGC
TAAACAATCATTCGGTTATGCCATTTCAGGATTTGCTTTAACAGAAGCTATTGCCTCGTTTGCCT
CAATGATGGCCTTTTCAATCTTATTCGTATTTCGAGAAGAGGTGCCAAAGCACCTCGGGGGGTTT
CAGGGGGGGTCCGAAAGGGCCCCCTTTTACCCTTTCGAAAGACGGGATACTTTAAAAAAAGAGAG
TTGAATTGGCGGGTCAACTCGATCGGCTCGAAATCAATAGAGGCC
Right flanking sequence: Indices 148601 -- 149100
GGAACCTTCCCTCACGCAGCCGCTTTCGGGGTATTACCCAAAGCCGAAGCCAAGAAAGACTCGGG
CTGGCTTTTCCGCTTGCGATTAATAGATTAGCCAAATATGCTTGCATCGATATAGCTTTGAAGTT
ATCAACGATAACTGAAGTTATCGGAGTCGAATGCCTATCAATTTCCACGATAGATGCTGAACACT
CCTGTCCTGAGAGAACTTCAAGAAGTCCCGTTCTTTATTATTTCCGAGCGAAGCCAACCGCTATT
TCAGAGTAATAGTGGTAAGCGGGTTATTCATAAGATTGAGTGAATGATGCAGGCCGTGTGAACAA
AAAAAGAGTGCAAATCAAATAAGTTCGCTTGCTTTCGCAGCAGGCTTCTGCTGCCAAACAATTCT
TCTGCACACTTTAAAGCAAGCAAGTTGGTTTGGACCTCCAAAACAAAACAAAACAAAACAAAACA
AAACAAAACAAAACAAAACAAAACAAAAGTTTGCAGAAGAAAAGA
Found at i:149101 original size:5 final size:5
Alignment explanation
Indices: 149029--149083 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
149019 TTTGGACCTC
149029 CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA
1 CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA CAAAA
149079 CAAAA
1 CAAAA
149084 GTTTGCAGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Left flanking sequence: Indices 148529 -- 149028
GGAACTTCCCTTCCCTTCCCTGGAACTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCC
CTGGAACGGAACCTTCCCTCACGCAGCCGCTTTCGGGGTATTACCCAAAGCCGAAGCCAAGAAAG
ACTCGGGCTGGCTTTTCCGCTTGCGATTAATAGATTAGCCAAATATGCTTGCATCGATATAGCTT
TGAAGTTATCAACGATAACTGAAGTTATCGGAGTCGAATGCCTATCAATTTCCACGATAGATGCT
GAACACTCCTGTCCTGAGAGAACTTCAAGAAGTCCCGTTCTTTATTATTTCCGAGCGAAGCCAAC
CGCTATTTCAGAGTAATAGTGGTAAGCGGGTTATTCATAAGATTGAGTGAATGATGCAGGCCGTG
TGAACAAAAAAAGAGTGCAAATCAAATAAGTTCGCTTGCTTTCGCAGCAGGCTTCTGCTGCCAAA
CAATTCTTCTGCACACTTTAAAGCAAGCAAGTTGGTTTGGACCTC
Right flanking sequence: Indices 149084 -- 149583
GTTTGCAGAAGAAAAGAAGCTCTTCTGCTTCGCGCAGCGGGGAAAAGCAGAAGTCTCTTCTGCTT
CCAAAAAGCAAGCAAGCAAGAGAGTTGGGACCTCCAAAAGAATGCACAGAACTTCTGCACACTTT
AAAGCAAGCAAGAAAGTATTCCACTCCAAAAGTTTGCAGAAGAGACTTCTGCTTCGCGTAGCGGG
GAGGGGAAAAGCTCTTCCGAAATCCGAAAAAGATTGCTGAGCGCAGCGGTGAAGGGGAAGCCAAA
GTTGCGTGCGTTTGGGGAAAAGGTTGCGGGCTGGGCTGGGCTTGGCTGGGTGTTTGGAAGCTAGT
AGCTGTGCTTGATGCTCTGGATGAGATAGACACACACAAGAGCTATCCATCACATAGAACCAACT
TCAGCTGTTGTTTAAGTTGTTGCCAGCCAAATGTTCTGGGGTCTCGGGGGAAGTCCTTGGATCCC
TTTTTACTTTTATGTCCTAACAGCTTACTCTTTAATATCCTTTGT
Found at i:149920 original size:12 final size:12
Alignment explanation
Indices: 149903--149938 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
149893 ACCCAAAATC
149903 AATCAAGAAAGA
1 AATCAAGAAAGA
**
149915 AATCAAGAAATC
1 AATCAAGAAAGA
149927 AATCAAGAAAGA
1 AATCAAGAAAGA
149939 GAGTTCTGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.64, C:0.11, G:0.14, T:0.11
Consensus pattern (12 bp):
AATCAAGAAAGA
Left flanking sequence: Indices 149403 -- 149902
GCTAGTAGCTGTGCTTGATGCTCTGGATGAGATAGACACACACAAGAGCTATCCATCACATAGAA
CCAACTTCAGCTGTTGTTTAAGTTGTTGCCAGCCAAATGTTCTGGGGTCTCGGGGGAAGTCCTTG
GATCCCTTTTTACTTTTATGTCCTAACAGCTTACTCTTTAATATCCTTTGTTGTCAGTCTCCACA
ACGGTTGGGTTGCCGAGTCCCCGAACTATCACACTTGGTGTGTCTCTGACCCAACTAAGACGAGG
GTGTGTCTTAATAGACCTATTTATAGTGTAACCTAAGATACAGTTGTCGGGATCCAAGGAACCAA
CTTTACGTGCCAAAAGAGCTTGCTTTCTGAGCGCAGCGGTGAAGGGGAAGCAAAAGTTGGGGTTC
CAACTTAACTTTCAGGATCAAGAAGGGTTGGCGGGGTTCTTCGCGCAGCGGGGAAAAGCAGAAGT
CTCTTCTGCTTCCAAAAAGCAAGCAAGAAAGTTGGACCCAAAATC
Right flanking sequence: Indices 149939 -- 150438
GAGTTCTGAGCGCAGGGGTTATCCTCCCCTCCCCTCCCCCCCTCCCCTCCCCGGGGAAGAGAGAC
TTCTGCACACTTTAAAGAAAGCTTCGCGCAGCGAAGAACACCCTTCTGGTTTCAAACAACCAACA
ACCTTTTGCCAACAACCTTTTGCCTTCTGCACACTTTAAAGAAAGTTGGACGGATTTCAAAAGCA
GAAGTTTTCGCAGCTACCGTGAAGGTCCCACTCGGAACTCCTAGGATCCCTTTTTTGATGGCACT
CTATTTGATTGACAGATTCTTTAGCGTGTTACTGTTCTGGGCTGTCTATGCTTTTCGTTAATAGC
TTTGGGGAAAAGGTGGCCCGATAGTAGCAACCGTCTTTCTGTGTCTGGTAGTGGATCCGGTGTCC
TCTAATAAAAGGGTCGTTCGACTTGGCAAATACAGTTGTCGGGATCCAAGGACCCGTTAAACGAG
TCGGATCCAAGGAGTTCCACTCTCCCTCCTTCTCTCCCTCCGGCA
Found at i:149982 original size:13 final size:13
Alignment explanation
Indices: 149964--149990 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
149954 GGGTTATCCT
149964 CCCCTCCCCTCCC
1 CCCCTCCCCTCCC
149977 CCCCTCCCCTCCC
1 CCCCTCCCCTCCC
149990 C
1 C
149991 GGGGAAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.85, G:0.00, T:0.15
Consensus pattern (13 bp):
CCCCTCCCCTCCC
Left flanking sequence: Indices 149464 -- 149963
AGAACCAACTTCAGCTGTTGTTTAAGTTGTTGCCAGCCAAATGTTCTGGGGTCTCGGGGGAAGTC
CTTGGATCCCTTTTTACTTTTATGTCCTAACAGCTTACTCTTTAATATCCTTTGTTGTCAGTCTC
CACAACGGTTGGGTTGCCGAGTCCCCGAACTATCACACTTGGTGTGTCTCTGACCCAACTAAGAC
GAGGGTGTGTCTTAATAGACCTATTTATAGTGTAACCTAAGATACAGTTGTCGGGATCCAAGGAA
CCAACTTTACGTGCCAAAAGAGCTTGCTTTCTGAGCGCAGCGGTGAAGGGGAAGCAAAAGTTGGG
GTTCCAACTTAACTTTCAGGATCAAGAAGGGTTGGCGGGGTTCTTCGCGCAGCGGGGAAAAGCAG
AAGTCTCTTCTGCTTCCAAAAAGCAAGCAAGAAAGTTGGACCCAAAATCAATCAAGAAAGAAATC
AAGAAATCAATCAAGAAAGAGAGTTCTGAGCGCAGGGGTTATCCT
Right flanking sequence: Indices 149991 -- 150490
GGGGAAGAGAGACTTCTGCACACTTTAAAGAAAGCTTCGCGCAGCGAAGAACACCCTTCTGGTTT
CAAACAACCAACAACCTTTTGCCAACAACCTTTTGCCTTCTGCACACTTTAAAGAAAGTTGGACG
GATTTCAAAAGCAGAAGTTTTCGCAGCTACCGTGAAGGTCCCACTCGGAACTCCTAGGATCCCTT
TTTTGATGGCACTCTATTTGATTGACAGATTCTTTAGCGTGTTACTGTTCTGGGCTGTCTATGCT
TTTCGTTAATAGCTTTGGGGAAAAGGTGGCCCGATAGTAGCAACCGTCTTTCTGTGTCTGGTAGT
GGATCCGGTGTCCTCTAATAAAAGGGTCGTTCGACTTGGCAAATACAGTTGTCGGGATCCAAGGA
CCCGTTAAACGAGTCGGATCCAAGGAGTTCCACTCTCCCTCCTTCTCTCCCTCCGGCACTCTCTT
TCTTGATTGATTTCTTTCTTGATCTCTTTCTTTAAAAGTCAGTCG
Found at i:150082 original size:14 final size:14
Alignment explanation
Indices: 150063--150092 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
150053 TTTCAAACAA
150063 CCAACAACCTTTTG
1 CCAACAACCTTTTG
150077 CCAACAACCTTTTG
1 CCAACAACCTTTTG
150091 CC
1 CC
150093 TTCTGCACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.40, G:0.07, T:0.27
Consensus pattern (14 bp):
CCAACAACCTTTTG
Left flanking sequence: Indices 149563 -- 150062
TTACTCTTTAATATCCTTTGTTGTCAGTCTCCACAACGGTTGGGTTGCCGAGTCCCCGAACTATC
ACACTTGGTGTGTCTCTGACCCAACTAAGACGAGGGTGTGTCTTAATAGACCTATTTATAGTGTA
ACCTAAGATACAGTTGTCGGGATCCAAGGAACCAACTTTACGTGCCAAAAGAGCTTGCTTTCTGA
GCGCAGCGGTGAAGGGGAAGCAAAAGTTGGGGTTCCAACTTAACTTTCAGGATCAAGAAGGGTTG
GCGGGGTTCTTCGCGCAGCGGGGAAAAGCAGAAGTCTCTTCTGCTTCCAAAAAGCAAGCAAGAAA
GTTGGACCCAAAATCAATCAAGAAAGAAATCAAGAAATCAATCAAGAAAGAGAGTTCTGAGCGCA
GGGGTTATCCTCCCCTCCCCTCCCCCCCTCCCCTCCCCGGGGAAGAGAGACTTCTGCACACTTTA
AAGAAAGCTTCGCGCAGCGAAGAACACCCTTCTGGTTTCAAACAA
Right flanking sequence: Indices 150093 -- 150592
TTCTGCACACTTTAAAGAAAGTTGGACGGATTTCAAAAGCAGAAGTTTTCGCAGCTACCGTGAAG
GTCCCACTCGGAACTCCTAGGATCCCTTTTTTGATGGCACTCTATTTGATTGACAGATTCTTTAG
CGTGTTACTGTTCTGGGCTGTCTATGCTTTTCGTTAATAGCTTTGGGGAAAAGGTGGCCCGATAG
TAGCAACCGTCTTTCTGTGTCTGGTAGTGGATCCGGTGTCCTCTAATAAAAGGGTCGTTCGACTT
GGCAAATACAGTTGTCGGGATCCAAGGACCCGTTAAACGAGTCGGATCCAAGGAGTTCCACTCTC
CCTCCTTCTCTCCCTCCGGCACTCTCTTTCTTGATTGATTTCTTTCTTGATCTCTTTCTTTAAAA
GTCAGTCGTTTTGATGAAGATCTTAACACGTGGGTGACTGAGGATAAGGCTGCCTTGGGCGTATT
TTATCATTCCGAACTCGGGCGTAGGAATCTATCCTCCCTCCCTCC
Found at i:150685 original size:21 final size:22
Alignment explanation
Indices: 150660--150702 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
150650 GCTTCGCGCA
*
150660 GCAGAAGTTTCAACC-AACAAC
1 GCAGAAGTTCCAACCAAACAAC
150681 GCAGAAGTTCCAACCAAACAAC
1 GCAGAAGTTCCAACCAAACAAC
150703 CAACCTTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.44, C:0.30, G:0.14, T:0.12
Consensus pattern (22 bp):
GCAGAAGTTCCAACCAAACAAC
Left flanking sequence: Indices 150160 -- 150659
CCCACTCGGAACTCCTAGGATCCCTTTTTTGATGGCACTCTATTTGATTGACAGATTCTTTAGCG
TGTTACTGTTCTGGGCTGTCTATGCTTTTCGTTAATAGCTTTGGGGAAAAGGTGGCCCGATAGTA
GCAACCGTCTTTCTGTGTCTGGTAGTGGATCCGGTGTCCTCTAATAAAAGGGTCGTTCGACTTGG
CAAATACAGTTGTCGGGATCCAAGGACCCGTTAAACGAGTCGGATCCAAGGAGTTCCACTCTCCC
TCCTTCTCTCCCTCCGGCACTCTCTTTCTTGATTGATTTCTTTCTTGATCTCTTTCTTTAAAAGT
CAGTCGTTTTGATGAAGATCTTAACACGTGGGTGACTGAGGATAAGGCTGCCTTGGGCGTATTTT
ATCATTCCGAACTCGGGCGTAGGAATCTATCCTCCCTCCCTCCAACTTCTTACACAAAGGACCTG
AAGGTTGGTTGTTAGGGTTGCAGGCAGAGACTTCTGCTTCGCGCA
Right flanking sequence: Indices 150703 -- 151202
CAACCTTCAGAAGAGACTTCTGCTTCTGCAAACAACCAACCCTTATTGGCAAGCAAGCTGTTGGA
CCTGAAGGTTGGTTGGTTGTTAGGGTTGCAGGCAGAGACTTCTGCTTCGCGCAGCTACCAACTTC
TGCTTAAAAGTTGGACCAAGAAGCTTGCGCGGGGGGTTGGGAACTTCTGCTTCGCGCAGAAACCA
ACAACCAACCAACAAACGCAGAAGTAAGTTCCAACCAAACAACCAACCTTCAGAAGAGACTTCTG
CTTCTGAACTTCTGCTTTAAAGTTTGGCGGTTCTTCGCGCAGCGGAGAACACCCCGAACTTCGGG
TTGGAACTTCTGCTTCGCGCAGCGAAGAACTTCTGCGGATTTCAAAAAAACAAAAAAACAAAAAA
AAAGAGTGCGGCTGCTTTCGTAGCGAAGCGAAGGTGTTGTTGCTATTTTGGGATAAACCATAAGT
AACCGATCCCTCGGCTTTCTATCGAAAGGATCATTCACGTCTGGC
Found at i:152628 original size:12 final size:12
Alignment explanation
Indices: 152603--152642 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
152593 TAGAAGGGTG
*
152603 TTGGTTGGTGTGT
1 TTGGTT-GTTTGT
152616 TTGGTTGTTTGT
1 TTGGTTGTTTGT
*
152628 TTGGTTGGTTGT
1 TTGGTTGTTTGT
152640 TTG
1 TTG
152643 AAAGCAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 19 0.76
13 6 0.24
ACGTcount: A:0.00, C:0.00, G:0.40, T:0.60
Consensus pattern (12 bp):
TTGGTTGTTTGT
Left flanking sequence: Indices 152103 -- 152602
GCTCCTAGCGAAGCTGATCATGTGCTTCTGGCTTGTCCGAAAGAAAGAAAGAAAACTCTGCCGGA
AATCAATCAATCAATAAAGAAAGAAAGAAAGCTTTAAGGTGTTTGGTTTGCCTGGCTGAGTGCCC
GCCCGGCAGAGTATCCTCCGTCCTAGCTGTTAACTGGTCCAATCTCTAGGCTCTGGCCCTGGTAA
GTATCTCCGTTTGGGTGTCCCGTGAGGGTCAACCAAACGGCAGGTCTGACGGGTGTATGAATATG
CCCTGTGGATGGGAGTGTAACCCCTCGTGTTGGAGGGAGCACGACCTGTTTCACTAGTGACTAGC
TCGTTATTGTTCTAACTGGCCGGCTATGTGGAAGTGAGTATCTGGGGGAGTTGGTGCCCCTAAGG
GGAACCTGACTCTGCGTCTGGTGGTTTTCCGATTCCTTCGCTTCGCTGCGCTCAGAACTAACAAC
CTTTCTTGGTCCAAAAAGAGCTAGCTTTTTGGACGTAGAAGGGTG
Right flanking sequence: Indices 152643 -- 153142
AAAGCAGAAGTTTCTCTTCCCCGGGGAGGGGAGGGGAGGGGAGGGGAGGAGAACCCCTGCGCTCA
GATTCAACTTTCTTGGTTTCTAAAAAAAGGGAACAAAAAGCAGCCAGCAAAAAGCTCGTCCCGGG
GGCCCCTGCCACCTCCCTCTTATATCCCTCTGAAGTGGGGAAAAGGGTGTTACCCTGCGCTCGGT
CAAGAACTCCTGCCTGCCACCTCTGGAACCCGCAATAAAAGTTCACCGAGAAACCAACACGCAAC
CCGCACTCTTTTTTGCACGGGGTTTAGAAAGGTGTGAACCTTCGCAAGCAACCAAAAGTCCCCTT
CCCCTGCGCGAAGCAACAAACAACCCTTCTGCGCACAAACAACCCAACCTTCTTGGTTCCAAAAA
AAACTTTTCCCGCAATAAAATAAAAAGTATAAAAGTTCACCTGCTTGGAGAAACCAACACGCAAC
CCAAGAAGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTCTGA
Found at i:152675 original size:5 final size:5
Alignment explanation
Indices: 152665--152691 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
152655 TCTCTTCCCC
152665 GGGGA GGGGA GGGGA GGGGA GGGGA GG
1 GGGGA GGGGA GGGGA GGGGA GGGGA GG
152692 AGAACCCCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GGGGA
Left flanking sequence: Indices 152165 -- 152664
GGAAATCAATCAATCAATAAAGAAAGAAAGAAAGCTTTAAGGTGTTTGGTTTGCCTGGCTGAGTG
CCCGCCCGGCAGAGTATCCTCCGTCCTAGCTGTTAACTGGTCCAATCTCTAGGCTCTGGCCCTGG
TAAGTATCTCCGTTTGGGTGTCCCGTGAGGGTCAACCAAACGGCAGGTCTGACGGGTGTATGAAT
ATGCCCTGTGGATGGGAGTGTAACCCCTCGTGTTGGAGGGAGCACGACCTGTTTCACTAGTGACT
AGCTCGTTATTGTTCTAACTGGCCGGCTATGTGGAAGTGAGTATCTGGGGGAGTTGGTGCCCCTA
AGGGGAACCTGACTCTGCGTCTGGTGGTTTTCCGATTCCTTCGCTTCGCTGCGCTCAGAACTAAC
AACCTTTCTTGGTCCAAAAAGAGCTAGCTTTTTGGACGTAGAAGGGTGTTGGTTGGTGTGTTTGG
TTGTTTGTTTGGTTGGTTGTTTGAAAGCAGAAGTTTCTCTTCCCC
Right flanking sequence: Indices 152692 -- 153191
AGAACCCCTGCGCTCAGATTCAACTTTCTTGGTTTCTAAAAAAAGGGAACAAAAAGCAGCCAGCA
AAAAGCTCGTCCCGGGGGCCCCTGCCACCTCCCTCTTATATCCCTCTGAAGTGGGGAAAAGGGTG
TTACCCTGCGCTCGGTCAAGAACTCCTGCCTGCCACCTCTGGAACCCGCAATAAAAGTTCACCGA
GAAACCAACACGCAACCCGCACTCTTTTTTGCACGGGGTTTAGAAAGGTGTGAACCTTCGCAAGC
AACCAAAAGTCCCCTTCCCCTGCGCGAAGCAACAAACAACCCTTCTGCGCACAAACAACCCAACC
TTCTTGGTTCCAAAAAAAACTTTTCCCGCAATAAAATAAAAAGTATAAAAGTTCACCTGCTTGGA
GAAACCAACACGCAACCCAAGAAGTTTGTGTGAACTTCTGCTCTCTCTTATATCCCTCTGAAGTT
TGTGGGGAAAAGTTACCCCTGCGCTCGGTAAAGAACACCCTTCTG
Found at i:155773 original size:5 final size:5
Alignment explanation
Indices: 155763--155792 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
155753 AGCGCAGCTT
155763 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
1 TCCCC TCCCC TCCCC TCCCC TCCCC TCCCC
155793 CGTGCGGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCC
Left flanking sequence: Indices 155263 -- 155762
GAACTCAACAACTTAAGTTGTTGCCTTCCCGCACGGGGGAAAGCTGCGCAGAAGTTCAAACAACC
AACCCAACCCAACTTTTAACCCAACCAAACCCCGCAGAAGTTGCACTCTTTTTTTGAAATCCGTC
GCAGAAGTTCTTCGCTGCGCGAAGATTCAACCGCTTCCCCCGCAGGCAGAAGGGAAACTTCTGCT
TAGCTGCGCGAAGCAGAAGTTTCACGCAAGCCAGCCTTCTTGGTCCAACAAGAAAGGTAGCTGCG
CTCAGATTCAACCTTCTTGGCAGAAGTTTGAAACTTCTGCTTCGCTGCGCGAAGATTCAGGTCCT
TTGTAATTTCGAAACAACCTTTTCGGCCACCCCAAAGTAAATCCGTCCAAGAGTTCTGAGCGCAG
CGAAGAAAGAAACTTCTGCTTTGTGTTCTTGACGGATTTCCAAAAGCATAAGTTTTCGCAGCTAC
CGAACTTTGAACCAAAAGAGCTTGCTTGCTTTCTGAGCGCAGCTT
Right flanking sequence: Indices 155793 -- 156292
CGTGCGGGGGAAGAAGGAGAACCGGTTTGACGGATTTCAAAAGCAGAAGAAACTTCTGCTTCGCA
GCTACCGAACTTTGCACGGCAACTTTTACGGAGAACCTTCTGCAAGCAACTTCTGCACACCTTCA
CTTCGCTGCGAGATTTTGGCAGAAGTCTCTTCTGCTTGCTTTTTGGAAGTCCAAAAAGTGTGCAG
AAGTTTGTTTGGTTGTTTGAAACTTCTGCTTCGCTACGCAGGAAGTCCAAGAAGAACGGTAGCTG
CGCTCAGAAGAAACTTCTGCTTGCTTTTTGGAAGCAGAAGTTCTTCGCTGCGCGAAGCAACCAGA
AGGGTTGTTCCCGCTGCGCACAAACAACCTTTCTTGGTTCCAAAAAAAAAGTGTGCAGAAGGGTT
AAAAGAAAGTTGGAAGATCTTCTGCTTCTGCTGCGCTCAGAAGAAACACACTTCTGCTTGCTTTT
TGGAAGCAGAAGAGACTTCTGCTTCGCTGCGCTCAGAACAACCCA
Found at i:160428 original size:16 final size:16
Alignment explanation
Indices: 160424--160483 Score: 111
Period size: 16 Copynumber: 3.8 Consensus size: 16
160414 TGGAACTTCC
160424 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
160440 CTTCCCTTCCCTGGAA
1 CTTCCCTTCCCTGGAA
*
160456 CTTCCCTCCCCTGGAA
1 CTTCCCTTCCCTGGAA
160472 CTTCCCTTCCCT
1 CTTCCCTTCCCT
160484 CGGTCCGGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.10, C:0.48, G:0.10, T:0.32
Consensus pattern (16 bp):
CTTCCCTTCCCTGGAA
Left flanking sequence: Indices 159924 -- 160423
GTCTCTGGTCCTAAGCGGTTCAACCACGGGCCGCTCTCCGGTTTGGCCTTTCTGTTGTTCCCAGA
AGGTTGGGTGGGTTCTCGCAGCCCCAACTTCTGGCTCGGTCAAGGCACATACCTTGGATTGCAAT
TTGGTGTAGGTGAGGTGGGGTTGAGTTCCTCGTGTAGGTTCGAGGCATAACGGTGAGTGTAGGTG
TTGGAGGTAGGGGCTAAACGGTGGGTGGCTTTCCCGGGTAGTGGCAAGTGATGTGGGTAGGTGCG
AGTGTAAAGTGGGTGGTGGAGTTCAGGTGTAGGTAGTGAGAGTGTGTAGGGGGTGGGGTTAGTTT
TTTTGTGTATTGAGTTCGAGGCAACGGTGCGTGTAGGTGCGGTGGAGTGGTGGAGGTAGGTTGAG
TGAGGTTCGAGGCATAACGGTGCGAGTGAGGTGATCCAAGGAAGCCGGGGATCCAAACAACCACG
GAGATCCAATCCCTTCCCTGGAACGGGACCTTCCCTGGAACTTCC
Right flanking sequence: Indices 160484 -- 160983
CGGTCCGGCACGGGGGAAGCCGAGTGTATTAAACCGCCGTTATGCCGGCTTTCACGCACGGCCCC
TTTGCAAGGTCTTCCCTCTTATATTCCTCTGAAGTGCCGTACGGGGGAAGAGGCACGGGTTAGAC
CCTCGCTTGGGGAACCCGGGAAGCCGAGTGGATTAAACCGGCTTACACGGTGCCCAGACGTCCCC
TTTGCCAGGTCTTCCCTCTTATATTCCTCTGAAAGGACAGATTTCAAAAAAAGAGTGCGGTTGGT
GCAGGTGAACTCTTATTTTATTGCGGGAAAAGCAAGCAAGAAAGATCCAAGAAGTCCCCTCTTAT
ATCCCTCTTCAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTCAAGAACTTACCAACCTTCTGC
AACCCTTTACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGCACTTCCCTGAACCTCG
GAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAGGTAAGACCTTTT
Found at i:160467 original size:21 final size:20
Alignment explanation
Indices: 160407--160465 Score: 81
Period size: 16 Copynumber: 3.1 Consensus size: 20
160397 TGGAACGGGA
160407 CCTTCCCTGGAACTTCCCTTC
1 CCTTCCCTGGAACTTCCC-TC
160428 CCTTCCCTGGAAC-T---TC
1 CCTTCCCTGGAACTTCCCTC
160444 CCTTCCCTGGAACTTCCCTC
1 CCTTCCCTGGAACTTCCCTC
160464 CC
1 CC
160466 CTGGAACTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
16 15 0.44
17 1 0.03
20 5 0.15
21 13 0.38
ACGTcount: A:0.10, C:0.49, G:0.10, T:0.31
Consensus pattern (20 bp):
CCTTCCCTGGAACTTCCCTC
Left flanking sequence: Indices 159907 -- 160406
GGCCCGGCTGTCCTCGTGTCTCTGGTCCTAAGCGGTTCAACCACGGGCCGCTCTCCGGTTTGGCC
TTTCTGTTGTTCCCAGAAGGTTGGGTGGGTTCTCGCAGCCCCAACTTCTGGCTCGGTCAAGGCAC
ATACCTTGGATTGCAATTTGGTGTAGGTGAGGTGGGGTTGAGTTCCTCGTGTAGGTTCGAGGCAT
AACGGTGAGTGTAGGTGTTGGAGGTAGGGGCTAAACGGTGGGTGGCTTTCCCGGGTAGTGGCAAG
TGATGTGGGTAGGTGCGAGTGTAAAGTGGGTGGTGGAGTTCAGGTGTAGGTAGTGAGAGTGTGTA
GGGGGTGGGGTTAGTTTTTTTGTGTATTGAGTTCGAGGCAACGGTGCGTGTAGGTGCGGTGGAGT
GGTGGAGGTAGGTTGAGTGAGGTTCGAGGCATAACGGTGCGAGTGAGGTGATCCAAGGAAGCCGG
GGATCCAAACAACCACGGAGATCCAATCCCTTCCCTGGAACGGGA
Right flanking sequence: Indices 160466 -- 160965
CTGGAACTTCCCTTCCCTCGGTCCGGCACGGGGGAAGCCGAGTGTATTAAACCGCCGTTATGCCG
GCTTTCACGCACGGCCCCTTTGCAAGGTCTTCCCTCTTATATTCCTCTGAAGTGCCGTACGGGGG
AAGAGGCACGGGTTAGACCCTCGCTTGGGGAACCCGGGAAGCCGAGTGGATTAAACCGGCTTACA
CGGTGCCCAGACGTCCCCTTTGCCAGGTCTTCCCTCTTATATTCCTCTGAAAGGACAGATTTCAA
AAAAAGAGTGCGGTTGGTGCAGGTGAACTCTTATTTTATTGCGGGAAAAGCAAGCAAGAAAGATC
CAAGAAGTCCCCTCTTATATCCCTCTTCAGTTTGTGGGGAAAAGTTACCCCTGCGCTCGGTCAAG
AACTTACCAACCTTCTGCAACCCTTTACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCGGTAAAG
GCACTTCCCTGAACCTCGGAGGGGAGGGGAGAACCCCTGCGCTCG
Done.