Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MZ826166

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 55806
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27


Found at i:34102 original size:9 final size:9

Alignment explanation


    Indices: 34088--34115  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

      34078 ACCATTTACG

                     
      34088 ATAAATAAA
          1 ATAAATAAA

                     
      34097 ATAAATAAA
          1 ATAAATAAA

                     
      34106 ATAAATAAA
          1 ATAAATAAA

             
      34115 A
          1 A

      34116 AAGGGCCATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21


Consensus pattern (9 bp):   
ATAAATAAA

Left flanking sequence: Indices 33588 -- 34087
GTTAACTGACTGGTCGTAGGTTCGAATCCTACCTGGGGAGATTTGATTCATTCTGAATTCTTTAA
TTCAGAATAAAAGGGCTCGCTTTGACCGTTAAGAGTAGGTAACCCATTCCCCGTCTTTGTTTCTA
TTGCATTCTATCTCATCGTATCACATCCTGTTCTGCGAGATTTTAAAATCACCGTCAATACCTCG
GTGTAGGTCCGGGATAATCCTTTGTTCCATAGCCCTGGGGCTATTTACAACTATCCAATTAAGAA
TTCTCAGATGTACTAGTACTAGCAGTGCATCAAAGATGCAGTCATCGATTCTCCCGAGAGGCCAC
AATTGCCGTGAGCAAACATATTAATGACGAGGAACGCATTTTTGTTATGCTACTAATACTTGTAC
TTGCTCTGCTATTCTGCCCCAGCCTGGCTGAGGAAGAGTTACGGGGCGTAAAACAAAAAATACGC
TGAGGGGGGTCGGGCATACTATGTGTAATGAATAAACCATTTACG


Right flanking sequence: Indices 34116 -- 34615
AAGGGCCATTCCATTTCGACAAAAGACCCACACCCAAGTTCCATAGCTTTTGGTCCGCTATCCCG
ATCATGATTTTCCTACCCCCAGAGGGAAAGGCCCTTCCCTTTTGGGCCGGTTGTGGGCGAGGAGG
GATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCAC
CCCGTCTCCACTGGATCTGTTCCCGGGAGTACCCTCAAAAAAAGGAACCTTTCCTCTCCCCAGCC
ATTTCGGGTTAAGAAGATGTGAAAGCGCCTTTCTCTCTATACGAACGGAACGGTGCGTTCCGAGG
TGTGAAGTGGGAGAGAGGGGATGTCATAATTGGGGTTTTGAATAAGACGACCTTTTGATTGATTT
TTCATTTATTTATTTTTCATATTGAAAAAGAAATAAGAATGGGAGGTGTTAAGCTTTTTATCATC
CTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGT



Found at i:43058 original size:23 final size:23

Alignment explanation


    Indices: 43013--43058  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 23

      43003 ATCACTAACT

                     *    **  *    
      43013 AATACTAATCTAATCTAATAGAA
          1 AATACTAATATAATAGAAAAGAA

                                   
      43036 AATACTAATATAATAGAAAAGAA
          1 AATACTAATATAATAGAAAAGAA

      43059 CTGTCTTTTC


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.59, C:0.09, G:0.07, T:0.26


Consensus pattern (23 bp):   
AATACTAATATAATAGAAAAGAA

Left flanking sequence: Indices 42513 -- 43012
GCGCCAAAGATCTTACCATTTCCGAAGGAACTGGAGTTCCGTCTCTTTTCCATTTCCATTCAAGA
GTTCTTATGTGTTTCCACGCCCCTTTGAGACCCCGAAAAATGGACAAATTCCTTTTCTTAGGAAC
ACATACAAGATTCGTCACAAAAAGGATAATGGTAACCCCACCATTAACTACTTCATTTATGAATT
TCATAGTAATAGAAATACATATCCTACCGAGACAGAATTTGTAACTTGCTATCCTCTTGCCTAGC
AGGCAAAGATTGACCTCCGCGGAAAGAATGATTCATTGGGATCGACATGAGAGTCCAACTACATT
GCAGTGCCAGAATCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCACGGTACAA
CCCTCTTCCCGCTGAGCCCCCTTTCTCCTCGGTCCACAGATACAAAATGTAAGACTGGCGCCAAC
AGTTCATCACGGAAGAAAGGACTCACTAAGCCGGGATCACTAACT


Right flanking sequence: Indices 43059 -- 43558
CTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTTTACGCAATCGATCGGATT
ATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGA
AAGCCGGGATCTTTCAGAAAAAGGATTCCTATTCAAAGAGTGCATAACCGCATGGATAAGCTCAC
ACTAACCCGTCAATTTGGGATCCAATTCGAGATTTTCCTTGGGAGGTATCGGGAAGGAATTGGAA
TGGAATAATATCGATTCATACAGAAGAAAAGGTTCTCTATTGATTGTACCTATGGGATATAGGAA
GAGGAAAAACCGAAGATTTCACATAGTATTTTTGATCGAAAAATCCATCTTATTTATTTCGTACC
CTTCGCTCAATGAGAAAATGGGTCAAATTCTAAAGGATCAAACCTATGGGACTTAAGGAATGATA
TAAAAAAAGAGAGGGAAAAATATTCAATAAAAAGAAATAAAAAGA


Done.