Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MZ826165
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 287410
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Found at i:16270 original size:5 final size:5
Alignment explanation
Indices: 16260--16302 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
16250 TCCACCCTAT
16260 TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAA
1 TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAA
16303 GTTCAGGCGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (5 bp):
TAAAG
Left flanking sequence: Indices 15760 -- 16259
CTTGTTGCCTTGAACAAAGTAGATCCCCAGGGAAGAATCTTGGGACAAACCTAACTAAGAACTAG
CTACTCGGATACGAGGGAAGCTACATCAACGGACCTTATCCCTCGATCCCATCGTAAGCTCTTCT
ACTAGCAACGGCGAACTAACGGGAGACCTAGCTGCTATAACAAGGAGAGGCCTGACTCTATTTAA
GCCTGGCCTCGGGAGTAGCGCTCTTCTTTTAGCTCAGAGTGGAGCTCACAGAAAAGAGGGAAGCC
CTTAGACCAGTCTCGAGGGAAGGGAAAGAAAGCTGCCTTCAAGAACTGAAAGGGAGGGAAGGAAG
TCAATGGGAAGTCATAACAAGAAGAGAGAAAGAATCTCTCCTCAGCTCGTCGATAGCTCCCAGAT
TCCATTAGCTACTTCCCTAAGGTAGTTGATTACAGAACCAAACGTAGTCACATCTAGCTCTCAAA
TTTATATATAGTGCAAGCTTACTTGCCAAAGCCTGTCCACCCTAT
Right flanking sequence: Indices 16303 -- 16802
GTTCAGGCGGAAGCGACTCGATCTTCTCTCTCATTCCAAATCAAAGGCAAGGGAAGCAACGAAGG
GCATTTACCTAGTTTTGTTGATAAGATGGGCTCAGTAGGCTTCGAACCTACAGTCTCAACCGGTA
TTGATGAGCCCGAGATCCAATACTCTCACTTCCAATCGCCACACGTAGCATTCATTTTCCGATAT
GAGACCTCTCGAGACTCTTGTACCATTCCCCTCTCCTTGAACCGTGGAACCCCTACTTGCTTGAC
TTGCTACCCCGAATATTGGACTAGGCTACTAACGGCTCCGAACCTGTCTTCTTTCCTCTCCTTTC
TGTGGAACCGAGTTTATGCTCTTCCTGTTCTGGTGGTACTAGGCCTTCTGCCGCTCTTTCTTCGG
CTATTCCACTTGTCGATATTGGTATCTCTAGAATAAATATCAGTGTGATGTCCTTTCCTTTCTTT
TCCTTCTTAGCGCGTAGTGGGAAGAGATGGTGCTATCGTATACTT
Found at i:85038 original size:24 final size:24
Alignment explanation
Indices: 84998--85051 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
84988 AAATAAAGTG
*
84998 AATTGTATTTTGATTTGTTTTATT
1 AATTGTATTTTGATTTGTTTCATT
*
85022 AATTGT-TTCTTGGTTTGTTTCATT
1 AATTGTATT-TTGATTTGTTTCATT
85046 -ATTGTA
1 AATTGTA
85052 AATGTATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.19, C:0.04, G:0.15, T:0.63
Consensus pattern (24 bp):
AATTGTATTTTGATTTGTTTCATT
Left flanking sequence: Indices 84498 -- 84997
TTTTGAAAATTCTCGTTTTTATTTGGGTTTGGTAATGAATATACTTCAAAATCGTTTTGTTTTTT
GTAATGAAGTAATCGGTCTTTTGAATCCCATTTTGTTAAATTTTTTTTTTGAGTTATACGGCCTT
GATTGATTGTATTTCGCCATTTTTGTGGTATTAATCCAGACCATCTAATCTGAGATAAATTGTAT
TGATAATGACCTCTTAACCAGTTTTTCCATTGATTCGTTCCATAACTTGGAAATTTCGTATGCTC
TAATTCGGAATGAAATATTCCTTGTGTTCCAAAAGAATCCTTTATTGCAGTCTTAAGAAAAAAAG
AAGTTCCATGATATTCAAGAACAGATCTTAACTTATATAAATTAATAACTCGGGTTTGGGATAAT
TTGTAAAATACATATGCTTGCGACAAGGAGGATAAGTCAAAAAAAAGATGTGAATTTTTCTTACT
ATTACTAATATTATAAAGTGACTTTTTTATAGTCGAAATAAAGTG
Right flanking sequence: Indices 85052 -- 85551
AATGTATTTATATTTTTGAATAATTTTTTTTGTTGATTCAAGAACAAGTTGTGTATACATTCTGG
CAATATTAATGATATATAGAAAGATATCTATGTATATTTTTTCAATAAAAATTTTTATAAAAACC
TGTAATTTCCAGATTAATCGAGTATTTCTTCTTTTTAATATTTGCCAAATATCTTTTGGCCATTC
TACATTATAACTTCTTTTATTAGGACTACTGTTTATTCCTGGAGTTCCTTTTTTTTTTTCTTTTG
TAATACTCTTTATTTTCTTTCTGATTGTGCTTGTTCTATCAGTTATATTTTTAATTTTTCTTTCT
CTCGGTGAATAATTATCTGTAGATCGAATTTTATTAAACGAGTTATGAATTGTCTGATTGCTGAT
TATAGAACCTTTTTCTTGGTTAGTTTCACCGGATTCATATACTTCTTTCAATCTAAATAGAGTTG
GATTTGCTTTTGAGAGCTCTTTTTTTTTTCTTTTTAGAAACAGAA
Found at i:89315 original size:9 final size:9
Alignment explanation
Indices: 89301--89328 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
89291 ACCATTTACG
89301 ATAAATAAA
1 ATAAATAAA
89310 ATAAATAAA
1 ATAAATAAA
89319 ATAAATAAA
1 ATAAATAAA
89328 A
1 A
89329 AAGGGCCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
ATAAATAAA
Left flanking sequence: Indices 88801 -- 89300
GTTAACTGACTGGTCGTAGGTTCGAATCCTACCTGGGGAGATTTGATTCATTCTGAATTCTTTAA
TTCAGAATAAAAGGGCTCGCTTTGACCGTTAAGAGTAGGTAACCCATTCCCCGTCTTTGTTTCTA
TTGCATTCTATCTCATCGTATCACATCCTGTTCTGCGAGATTTTAAAATCACCGTCAATACCTCG
GTGTAGGTCCGGGATAATCCTTTGTTCCATAGCCCTGGGGCTATTTACAACTATCCAATTAAGAA
TTCTCAGATGTACTAGTACTAGCAGTGCATCAAAGATGCAGTCATCGATTCTCCCGAGAGGCCAC
AATTGCCGTGAGCAAACATATTAATGACGAGGAACGCATTTTTGTTATGCTACTAATACTTGTAC
TTGCTCTGCTATTCTGCCCCAGCCTGGCTGAGGAAGAGTTACGGGGCGTAAAACAAAAAATACGC
TGAGGGGGGTCGGGCATACTATGTGTAATGAATAAACCATTTACG
Right flanking sequence: Indices 89329 -- 89828
AAGGGCCATTCCATTTCGACAAAAGACCCACACCCAAGTTCCATAGCTTTTGGTCCGCTATCCCG
ATCATGATTTTCCTACCCCCAGAGGGAAAGGCCCTTCCCTTTTGGGCCGGTTGTGGGCGAGGAGG
GATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCAC
CCCGTCTCCACTGGATCTGTTCCCGGGAGTACCCTCAAAAAAAGGAACCTTTCCTCTCCCCAGCC
ATTTCGGGTTAAGAAGATGTGAAAGCGCCTTTCTCTCTATACGAACGGAACGGTGCGTTCCGAGG
TGTGAAGTGGGAGAGAGGGGATGTCATAATTGGGGTTTTGAATAAGACGACCTTTTGATTGATTT
TTCATTTATTTATTTTTCATATTGAAAAAGAAATAAGAATGGGAGGTGTTAAGCTTTTTATCATC
CTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGT
Found at i:98271 original size:23 final size:23
Alignment explanation
Indices: 98226--98271 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
98216 ATCACTAACT
* ** *
98226 AATACTAATCTAATCTAATAGAA
1 AATACTAATATAATAGAAAAGAA
98249 AATACTAATATAATAGAAAAGAA
1 AATACTAATATAATAGAAAAGAA
98272 CTGTCTTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.09, G:0.07, T:0.26
Consensus pattern (23 bp):
AATACTAATATAATAGAAAAGAA
Left flanking sequence: Indices 97726 -- 98225
GCGCCAAAGATCTTACCATTTCCGAAGGAACTGGAGTTCCGTCTCTTTTCCATTTCCATTCAAGA
GTTCTTATGTGTTTCCACGCCCCTTTGAGACCCCGAAAAATGGACAAATTCCTTTTCTTAGGAAC
ACATACAAGATTCGTCACAAAAAGGATAATGGTAACCCCACCATTAACTACTTCATTTATGAATT
TCATAGTAATAGAAATACATATCCTACCGAGACAGAATTTGTAACTTGCTATCCTCTTGCCTAGC
AGGCAAAGATTGACCTCCGCGGAAAGAATGATTCATTGGGATCGACATGAGAGTCCAACTACATT
GCAGTGCCAGAATCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCACGGTACAA
CCCTCTTCCCGCTGAGCCCCCTTTCTCCTCGGTCCACAGATACAAAATGTAAGACTGGCGCCAAC
AGTTCATCACGGAAGAAAGGACTCACTAAGCCGGGATCACTAACT
Right flanking sequence: Indices 98272 -- 98771
CTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTTTACGCAATCGATCGGATT
ATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGA
AAGCCGGGATCTTTCAGAAAAAGGATTCCTATTCAAAGAGTGCATAACCGCATGGATAAGCTCAC
ACTAACCCGTCAATTTGGGATCCAATTCGAGATTTTCCTTGGGAGGTATCGGGAAGGAATTGGAA
TGGAATAATATCGATTCATACAGAAGAAAAGGTTCTCTATTGATTGTACCTATGGGATATAGGAA
GAGGAAAAACCGAAGATTTCACATAGTATTTTTGATCGAAAAATCCATCTTATTTATTTCGTACC
CTTCGCTCAATGAGAAAATGGGTCAAATTCTAAAGGATCAAACCTATGGGACTTAAGGAATGATA
TAAAAAAAGAGAGGGAAAAATATTCAATAAAAAGAAATAAAAAGA
Found at i:103435 original size:17 final size:17
Alignment explanation
Indices: 103413--103446 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
103403 TTTTTGATAG
103413 ATTGGATATCTATATAA
1 ATTGGATATCTATATAA
103430 ATTGGATATCTATATAA
1 ATTGGATATCTATATAA
103447 GGCATTCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (17 bp):
ATTGGATATCTATATAA
Left flanking sequence: Indices 102913 -- 103412
CGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTA
TTGCAATTGCTCAGGATACCCTTTTTTAGCTTCTAGGGTCTATTTCTTAGTTCAAAATCCCTCTT
ACTAACTGGAATCAAAGAATTAGTAGATCTGTTCCGCCCAAAATGGGAATGGGCTAGGGTTATGA
ACTTATAATCTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATTCCATACCGGACC
AGACCGGAATAGAGTTATATACATTCTCATTATGAGAAGGGGTCATTTGAGCGTATCTAAATAGA
GACTATGTTTACATATGGATCCCTACGTCGTTACATTACATTTAGGATTAGGAATAGGCGTAGTA
ATCGGACCTGCTTTTTACATATCTCTCGTTATTTGGGACCCTATTCACCTCTTTGGGCTTCTATT
GAATCGAGAAATGGGTTTGATTGTGTCCATCTTTTTTTTTGATAG
Right flanking sequence: Indices 103447 -- 103946
GGCATTCTCCGGATAATTCAAATCGAAGCAATTGGATGTCCAACTCGGGCCTATATGACATGACC
GATCAATAGAAATACTCCACCTTTGTCATATATTCCATACATCACACTAGATAGATATCATATTC
ATGGAATATGATTCACTTTCAAGATGCCTTGGTGGTGAAATGGTAGACACGCGAGACTCAAAATC
TCGTGCTAAAGAGCGTGGAGGTTCGAGTCCTCTTCAAGGCATAATATTGAGAATGCTCATTGAAT
GGGCAATTCCATAAGAGAGCTCGGATCGAATCGGTATATCAATACCGATTCGATCCGAGCTCTTG
GAATTTGAATAAGTTCGGCAGCGGATCACTAAATCTTGGTGATCTTCTCTATCTAATGAATGGGG
AGTCTGCTTTAAAATCGTCCGCCCTGCACCCAACCCACCCCCCGAGTATATGCTTCAACAGGAAT
CACACAGGGGTAGATTAGAAACCTCTGGTAAAATGCCCGCCCGTA
Found at i:106175 original size:18 final size:18
Alignment explanation
Indices: 106152--106211 Score: 120
Period size: 18 Copynumber: 3.3 Consensus size: 18
106142 GTCACGATCG
106152 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
106170 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
106188 ATATCGTCACTAGCATCA
1 ATATCGTCACTAGCATCA
106206 ATATCG
1 ATATCG
106212 ATATCATCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (18 bp):
ATATCGTCACTAGCATCA
Left flanking sequence: Indices 105652 -- 106151
TTGATTTCTTCTGTGTAATACTAATCGATAGGGCCTCATTGGTAAGTGCTACAAGATCTCGTGCA
TTGGAACCCATGGTTATGGACCCGAATCCATTAGTATGGAACATTTTATTTTCCAAGCGAAATCC
CCTAGTATATGAAAGGGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAA
TGCACGTATTTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAA
GCAATAACAAGAATATTTCTAGTGGAACATCTTTCACAATCCCTGGAGAGATGGTTCACTAATAG
ACCGAGGGAGAAGTAATTCGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGC
AAGGAGACATTGCTTTTGCTAATTCGAATTGAAGGGTGATATAAAATCGGTCTATTTCCGGCATC
ATATCCATAGTTAGCAGTTCCAGCTCCGTATGAAGGTCACGATCG
Right flanking sequence: Indices 106212 -- 106711
ATATCATCAATAAGAAAACCTTTAGGCTTGTTATCCAGGAACTTGTTCAGAAATACCGTAATGAA
AGGAACATAGGAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTA
TCACTAAAATACCCCTAGAGGGGGATAAGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGATGGG
AAATTCAAACTATTAGCCCCACACGAGGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAA
TATCCGTCTTTCTGCTAAACAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGT
CAACTAAGTATCGTAAGTAAATTGCTCCCGGTTGTTCAATCATTTGATAGCCAGAGTCATTCTTT
GATAAATGATCACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTAAGGT
GGAGAACTGAACCAAGAATTCTCTTTCTTCATCATCAATCGAATC
Found at i:122798 original size:19 final size:19
Alignment explanation
Indices: 122774--122811 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
122764 ATAATTTCAT
122774 CTTTTTAGTTGGAACTTTA
1 CTTTTTAGTTGGAACTTTA
122793 CTTTTTAGTTGGAACTTTA
1 CTTTTTAGTTGGAACTTTA
122812 GGCGGTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (19 bp):
CTTTTTAGTTGGAACTTTA
Left flanking sequence: Indices 122274 -- 122773
AAAACGGAAGAATTATAAATCTCCAAAATAATAGATAGAAATATCGCAAATAGGGCCATTGCGAC
ACCCATCAAAGGAGTCGTTCCCCATCCAGGAGCTACTTTACCATATTCCGAATTCAATGGTTTCA
ATAAATTCCCTACAGTAGTTGGTTTTGGACGAGATCTAGAACCGTTCTCAACAGTTTGTGTAGCC
ATAAATCCTATTGTATTCATTGAGATCTGTTGACTTTGTATACCATTCCGTTGTAAATAAACGAT
CTTATCATAGATCCGTTGTGGTCTTGAAATTATATAATAATGGAAACAGCAACCCTAGTCGCCAT
CTTTATATCTGGTTTACTTGTAAGTTTTACCGGGTACGCCTTATATACCGCTTTTGGGCAACCTT
CTCAACAACTAAGAGATCCATTCGAGGAACATGGGGACTAGTTGAAGTAATGAGCCCCCCAATAT
TGGGGGGCTCATTACTTCAATTGAGATAATGAAAAATAATTTCAT
Right flanking sequence: Indices 122812 -- 123311
GGCGGTTCTCTAAAAAAGATAGCGAAAAAAATTATACCTAGAGTCGAGACTAAGAGGAATGTATA
AACCAATGCTTCCATAAATTCGATCGTGGTTTACAATTATAGCTTCCATACCTGTTTGTTTTTTG
TTTATTTTTATTTGTGATCATCTCCCGGATAAAGAAAGGACAAGAGTCAAAAAAGGGTGATTCAA
ATCAAGATTTCTCCGGTACCCTATATTATAAAATTATAAAGAAAGATCAAATCACAAAAAGAAAA
ATAAAGTCGAAAGACACCAAAGCAATGGTGTATCAGACTACTTGTCTTCTTGTAGTTGGATCTCC
CAGTTTTTGGAATGCTCCAAATTCTACTTGAGCATCCAAATCTGGATCAATACCAGCAAAAACAT
CTCTGAACAAGGTTCTAGCACCATGCCAAATATGTCCAAAAAAGAAGAGCAAAGCAAAAGAAGCA
TGTCCAAAAGTAAACCAACCCCTCGGACTGCTACGAAAAACACCA
Found at i:124971 original size:25 final size:25
Alignment explanation
Indices: 124937--124986 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
124927 CCTTATTTAT
124937 TCTGTATTTCTAATCTATGTATAAA
1 TCTGTATTTCTAATCTATGTATAAA
124962 TCTGTATTTCTAATCTATGTATAAA
1 TCTGTATTTCTAATCTATGTATAAA
124987 ATATGATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (25 bp):
TCTGTATTTCTAATCTATGTATAAA
Left flanking sequence: Indices 124437 -- 124936
AAGGGTATAACGAACATACCCTGTCTCCACATTGGATCAAGAACAGGGTCAGAGGGATCAAAAAC
TGCTAATTCATATAGAGCCATCGAACCCGCCCAACCAGCAACTAGAGCTGTATGCATTATATGGA
CAGAAAGCAACCGGCCGGGATCATTCAATACAACGGTATGAACACGATACCAAGGCAAACCCATG
GAAATACCCCTTATTTATATCAAAGAAAAAAAGACACTACGTAACTTTATTGCATTGGAAAAGAC
TATACTATGACTATGTTCCCCTGTTCAGGGGATTGTTTCAGAGCAAGGGTTAATATTTGTTCTAT
TCTGTTGGTAATAATGGAACGATTCCGTTCGTAGGAACAAAGAGAAGCAGATTTATTCTATACTC
GATAAGTACCAATACGCAATGGGGAGGTTGATACCGTTTTCTATGAGCGAATGCGTCCATACTTC
TTCATCATTAGAAGGGCCTATTCATAAGAATTTTCCCTTATTTAT
Right flanking sequence: Indices 124987 -- 125486
ATATGATAAAGGACAATATTATAAAGACAATAAACCCATTGTTACGTTTCCACATCAAAGTGAAA
TATAGTACTTAATTCTTTTTTCTTTTTTTTCATGCCTATTGGTGTTCCAAAAGTACCCTTTCGAA
GTCCTGGAGAGGAAGATGCATATTGGGTTGACATATAGTGCGACTTGTCAGATATATTGGGTCAT
ATGGGATTTCCCCGTTCTCTCCCCCGATCGAGATATCCTCTGTTTCGCCCAAGAAAGATTAATTG
AATCATCAAAAATTTGGAGCGTGAAGTGCAATTAGACCCATTTTTGAGGGGGTTCAGATTACTAT
TACCAATTAGAATAATTTATGGTTGGCTTGGTTGGACTAATAAAATGAAGTATCCAGGCTCCGTT
TAGAAAAAACCCACTTGGAAATAGATCTATGATTACTACTTGTATCATAAGCGGTTGCTATTTGT
AAAGAGAAGCGATCTCAAACTCTTAATCAATCGAGTAATATGCAC
Found at i:125017 original size:14 final size:15
Alignment explanation
Indices: 124986--125018 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
124976 CTATGTATAA
124986 AATATGATAAAGGAC
1 AATATGATAAAGGAC
*
125001 AATATTATAAA-GAC
1 AATATGATAAAGGAC
125015 AATA
1 AATA
125019 AACCCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (15 bp):
AATATGATAAAGGAC
Left flanking sequence: Indices 124486 -- 124985
CAGAGGGATCAAAAACTGCTAATTCATATAGAGCCATCGAACCCGCCCAACCAGCAACTAGAGCT
GTATGCATTATATGGACAGAAAGCAACCGGCCGGGATCATTCAATACAACGGTATGAACACGATA
CCAAGGCAAACCCATGGAAATACCCCTTATTTATATCAAAGAAAAAAAGACACTACGTAACTTTA
TTGCATTGGAAAAGACTATACTATGACTATGTTCCCCTGTTCAGGGGATTGTTTCAGAGCAAGGG
TTAATATTTGTTCTATTCTGTTGGTAATAATGGAACGATTCCGTTCGTAGGAACAAAGAGAAGCA
GATTTATTCTATACTCGATAAGTACCAATACGCAATGGGGAGGTTGATACCGTTTTCTATGAGCG
AATGCGTCCATACTTCTTCATCATTAGAAGGGCCTATTCATAAGAATTTTCCCTTATTTATTCTG
TATTTCTAATCTATGTATAAATCTGTATTTCTAATCTATGTATAA
Right flanking sequence: Indices 125019 -- 125518
AACCCATTGTTACGTTTCCACATCAAAGTGAAATATAGTACTTAATTCTTTTTTCTTTTTTTTCA
TGCCTATTGGTGTTCCAAAAGTACCCTTTCGAAGTCCTGGAGAGGAAGATGCATATTGGGTTGAC
ATATAGTGCGACTTGTCAGATATATTGGGTCATATGGGATTTCCCCGTTCTCTCCCCCGATCGAG
ATATCCTCTGTTTCGCCCAAGAAAGATTAATTGAATCATCAAAAATTTGGAGCGTGAAGTGCAAT
TAGACCCATTTTTGAGGGGGTTCAGATTACTATTACCAATTAGAATAATTTATGGTTGGCTTGGT
TGGACTAATAAAATGAAGTATCCAGGCTCCGTTTAGAAAAAACCCACTTGGAAATAGATCTATGA
TTACTACTTGTATCATAAGCGGTTGCTATTTGTAAAGAGAAGCGATCTCAAACTCTTAATCAATC
GAGTAATATGCACGAATACATCAAATATTTGGCGGAAGCATGAAT
Found at i:129034 original size:21 final size:21
Alignment explanation
Indices: 129008--129048 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
128998 AAACGCCTAC
129008 GAAAAGATCGCTTGGATTTAA
1 GAAAAGATCGCTTGGATTTAA
*
129029 GAAAAGGTCGCTTGGATTTA
1 GAAAAGATCGCTTGGATTTA
129049 TCCATGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (21 bp):
GAAAAGATCGCTTGGATTTAA
Left flanking sequence: Indices 128508 -- 129007
GAGTTCCCCGGAGAATGAACTCCGGGAGGGTAGAGTCAAAATTAATATGATAAAATATGCTAAAC
TAAAGTAGTAAAAATGAATGAACACACTCAATAAAAAAGGATTTATTCTTCCCCGATTCTTTTTT
TTTTCTTACGACACGATAATCAAATCTGTATTTTCGTATTTTTCGAACAAAACATCAACCCGCGT
TTGAGTTCGGATTGGAATTTTTATTCAAGTGAAGAAAGAGTAAGCCTATTTTTTTCTGGCTCTAA
GACCAGCAGTTCTAGCGGTCGACTCGGTTCTTTCAAATTGTTTATCATTATTAAGAAAAGGTAAC
AAAGATAAAATACGAGCTTGTTTTATAGCAATAGTAATTAATCGTTGTTGTTTCAAGGTCAATCT
ATTCACCCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTC
TATAATCAATTCGATCCCCCGATTGGATCGGGGGCAAACGCCTAC
Right flanking sequence: Indices 129049 -- 129548
TCCATGGTTTGTTTACTGTATTCCTTATCTCGAAAATCCTATTTCGGTCGGATCTAAAATGAATT
AGAATAAATAAATAGGATTTGGTTTGTTTATATTTAAATATGTTATATATATAATGTAATTTTTT
CCCCTTCCAAGGAAGGGTTACATACAGGCGCTCGATTTGATCTATTTCTTTATCTCCCCATGAAT
CGTATGTTTGTAACAATATGGACAGAATTTTCTCAATTCCAATCGATTAGGCGTATTGTGCCGGT
TCTTTTGAGTAATATATCTGGAAATACCCGTTGATACCTTATTAACACCGTTTCGAACACAACTG
GTACATTCCAAAATAACGGTTATTCGGACATCCTTCCCCTTGGCCATGAACCTCCTTTTTCTTTT
TTTATTTTTGATTTACTCAACTCTTCTATTTTCGATCTGAAACGAAGAAGAAGAAAGGAAGGAAA
AATAGAAGTTACTAACTTGAAATCCAATTATGAAAGATTTCGCTG
Found at i:129783 original size:17 final size:17
Alignment explanation
Indices: 129758--129790 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
129748 CCCTTATTCT
129758 AAAAAAG-AAAAGGGGA
1 AAAAAAGAAAAAGGGGA
129774 AAAAAGAGAAAAAGGGG
1 AAAAA-AGAAAAAGGGG
129791 GGCGAAGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 2 0.13
18 8 0.53
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAAGGGGA
Left flanking sequence: Indices 129258 -- 129757
AATATGGACAGAATTTTCTCAATTCCAATCGATTAGGCGTATTGTGCCGGTTCTTTTGAGTAATA
TATCTGGAAATACCCGTTGATACCTTATTAACACCGTTTCGAACACAACTGGTACATTCCAAAAT
AACGGTTATTCGGACATCCTTCCCCTTGGCCATGAACCTCCTTTTTCTTTTTTTATTTTTGATTT
ACTCAACTCTTCTATTTTCGATCTGAAACGAAGAAGAAGAAAGGAAGGAAAAATAGAAGTTACTA
ACTTGAAATCCAATTATGAAAGATTTCGCTGCAATCAATATAGTAAATAATATACAAAGATTTCT
AAACTAAATTTCAAATCTACAGTATTTCATTTACATTTAAGTATCTTGTATAAGAGCCTTGCCCT
AGACCTAGACCCCACATTGTTTATTCTACCTACATCCCTATTTAATTCGAACTTGAACCCAAGTC
TGGCAGCTGTTACTTTTTCTTTTTTTCTCTTTCCTCCCTTATTCT
Right flanking sequence: Indices 129791 -- 130290
GGCGAAGGATTAGTCACAGATATTTAATTGTATCCCTAATCTTTGTTATTCGTTACCGTGTCAAT
AACTAGAATCAAAAAAAGGGGAATGTCAACGCATCTGGGAAAAAACGATTAATCTCTATCAATAG
ACCTGCTAAAGACCCGAACCATAGAGTACTTAATACCGGTGCCACGGAGAGATATGTTTTTAGAT
CTCGCATTGAAAAACCTCCTTCTTTTATTGTAATATATATTCTATTGTAATATATAATGGTAATA
CATATATGATCAGATGCATATGCAGTTAAGGACCGCTTATAGTTGTACACGCAATCCCTAATTCA
AATGGAAATGTACAACGATCCGGTGAATAAGATTTTCTTAAAACAACATAAAAAAAGTCCCCGAG
CATTCCCGAAAATACTCATTTATTTTTACGGCGGGTTCCGTTCCGCATTTCATATGTATATAAAT
AAGTCTTTTACTATTATTATATAATAAATGAGACCAAAAAGACGA
Found at i:134091 original size:20 final size:20
Alignment explanation
Indices: 134066--134105 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
134056 TTTTTCTTTT
134066 TATGTTATGAACTCAATGTC
1 TATGTTATGAACTCAATGTC
134086 TATGTTATGAACTCAATGTC
1 TATGTTATGAACTCAATGTC
134106 GATAAATCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
TATGTTATGAACTCAATGTC
Left flanking sequence: Indices 133566 -- 134065
TATCTAAAAAGTTCTGATATATCTGGAAAAATTGAAACTAACACTAGGAACCTTTGACGAACAGG
ATCAAGAATCCTTTTTATTTCGACACAAGAAAGAGGTGTGGAAAATTCCTTTTCTTGTGTCGAAG
ACTAGGAAGACGAATAATCCCCCCTAGAATTATTTGTTCCATGCATTTATCCGTTCTATTCCCCG
CTTACTTATGTCTAGTATCTAGTCGAATTTCATTCTATTAGAATAGAAAACACTATTGATGCATT
TTATGACATTAAAATGTGATAATAGTAACATAGCCACACCACCCCAATTTGGATTAAAAAACAAA
CAAAGACAAAGAAGGGGTAAAGTCAAACAGTCTTCTTCACAATCTACATACTATGACTAGGAATG
CGGTACAAGGAATTCCCGACATCTCGTGGAAAAATAGTATAAATAAGCAAAAGGCTTTTCATAAT
GTAATTTTTTTATCATAGATAATCACCAAAAATCATTTTTCTTTT
Right flanking sequence: Indices 134106 -- 134605
GATAAATCCGCGAGTCTAGAAATTCATTTCGGACAATTGAACCTTCTCGAACTGTTTCTTTTTAA
GAACCAAAAAGATTTGTGCCAAAATAACAGATGCCAAGAAGAACAAAAGGCCTTGGACACGTAAT
GGATCTTGAAGTACTATTTCTGCATCTCCCTGACCAAATCCGCCCACATTAGGATTACTCGTCAA
TGGTTGATCAAATTTGATAGATTCGCCTTCTGAAACAAGAAGTTCTGGCCCTGGAGGGATAATAT
CAACCACTTGACGTCCATCCGATGCATCCGTTATGGTTATTTCGTAACCCCCCTTTTCTTTTCGT
ATTATTTTGCCTACTATACCTGCTGCTGTAGCATTATAAACCGTATTGTTACTCTTGCTCCCGTC
GGGATAAATCTGACCCCTTCCCCTGTTTCCGCCTACATATATAGGATATTTTAAGAAGTGAACAT
CTTTCTTAGTAGCGGGGTCCGGGGAAAGAATAGGAAAGGTGATTT
Found at i:139787 original size:25 final size:25
Alignment explanation
Indices: 139759--139808 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
139749 AACCCCCTTT
139759 CCAATAATATCCAATTATAAATAGA
1 CCAATAATATCCAATTATAAATAGA
*
139784 CCAATAATATCTAATTATAAATAGA
1 CCAATAATATCCAATTATAAATAGA
139809 ATTGGGCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.04, T:0.30
Consensus pattern (25 bp):
CCAATAATATCCAATTATAAATAGA
Left flanking sequence: Indices 139259 -- 139758
ATATGGAATAACTGTTCCCATTACTATCCCTAACTAAAAAAGTTTCATCAGAGATGAAATTCCGA
ATGTCCTTGACGCCGAATAAATGATCAACATTACTGTAATTCGAATTGTCACGACCCCCCCAACT
ATGAATATTTTTCTTCATATCATTTATATTCGGATCTTCACTTTCACTGGTATTTTCAATAGGAC
CAAGACTACCCGTTGATTTACTTAGCCCACACCTGTGTTCGAACTCTTTCTTAAACAGTATCGAA
TTGAACCACCATCTTTCCATAGAGTTTTCTTGCCCCTTATTTGTATGAAAATACAATAGATGAAT
AGTCATTCGATGAAAAATCTTTTATTTGAATCTCTTTTTCCCGTCAAAATAAACATAGAAATCCA
ATCACCAGGATTATTAACTAATAAGGAGTGTGGGTATTAAAAAAAAGGATTTTCTTTTGTGGGAC
TCCAGGTTAGCACTTCACTAGAGATAAATATGATGAACCCCCTTT
Right flanking sequence: Indices 139809 -- 140308
ATTGGGCTTTCTACTCTACTATGTCGTGTCAAATTCGCATCGAAAAAAAGAAAGATTTTTCTCCT
ATGAAGAATTTTTTTGTAAAATCTCGTCCAATAACTAAAATAAGTAATAAGTTTATATTCCAACA
CGGAACGAAAAGGACAATATACAGGATGGGTAGAAAGAGTTGTGATACTTGGCTCGATCCAGAGA
AATTCCAGGATAGAAAAGAATATACCAATCCTAAGGATCCATCGGATTAATTGTGGATTCAACAC
ACCAATAGAAACGTTTGAGTTGTTTAGTCTTAGATTTTGTATATTCTTCTATATCTAGATAAGTA
TGTATCTATCTAAAAAATATAATATATATATGCAATAGGGTCTTTGTATTCGGCTCAATCCTTTT
AGTAAAAGATTGGGCCGAGTTTAATTGCAATTTAATTAAGAGAACGAACGGTAATTATTGGATTA
CAAAACATCCAAAATATCCACTGCTTCAAATTCAAATTTGATCTC
Found at i:179977 original size:21 final size:21
Alignment explanation
Indices: 179951--179994 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
179941 AAATCTGATT
*
179951 ATAAATCTTATATAGATATAA
1 ATAAATCGTATATAGATATAA
179972 ATAAATCGTATATAGATATAA
1 ATAAATCGTATATAGATATAA
179993 AT
1 AT
179995 GAACCTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (21 bp):
ATAAATCGTATATAGATATAA
Left flanking sequence: Indices 179451 -- 179950
CTCTCTCGTTACCAGTTGATCCTCAGACCTACCCCCTTATTGCTCCATCAACTAAATTTATTCTT
AGATCTTGTTCGTGAAATTGAGAAAAAAAATATCTTTATAAATTCTTCCAATTTCTATGTATACT
AAACTACTACAGTATCCTTATTTTATTAATTTATTTTTTTCATTTTCTTTTAGTGTCTTCTTTAT
TATATCTCCCCTTCCTTCCAAGAAATCTAAAACTCCAGAGTATATCTTTCCACGGGTCGAAGCAA
GAAAAAGACTTCGGGTTTTTTTCTTTTTTGTTCTGTTAGAAAAAGAAAGAATTTCCTATTTTTCC
TTAAAATCAATACAATATAAAATAAATAACTAAGAGACTGGAAATGGAAGTATTTTCCACGCATC
CATTCTCCATCACGCTGTCGGAACAAAAATCTTGGATGCTGTAATATGGAAATATTTGGTACATG
AAGCTACGATCTGATAGATATACATCTAAATAAATAAATCTGATT
Right flanking sequence: Indices 179995 -- 180494
GAACCTTGATCTGTAATCAAAGAATGGCTCTTATGTTGTGACTCGGAATAAAAGTTTTTCTGTGG
AGGAACGGAATAACAATTTATTCCTATGGAATATCTAGGAACAATAAGATTGAATTATTGGAAAT
ATCGACAAATTCTTGCGGAGTCCAAAGAAATGAAAATAAAAGGGGTTAACTTGTTCCAATTTTAT
CTTTATCGAATTTTAATATCAGAATAGCGGATATAGTCATGATTCAATGGGTCAGGTCCACTTAT
TTTTTTCTTTTGTTGATTTCTAATCTTTACAATGCATTTGATTAGCAAAATGGAAAATAGGAATG
TTTGGTGATTCCAGAGACGACTTATCATTATTCATCATAATTCTAATTTACTGAACAAATGTTCA
ACTTTAGAACTATTCACTAAACTACTATACTATAACTCAGTAACTCAGTAGAATGACAACGTATT
ATTATACAGTTGGTTACTTTGTTCTATTAAAAATCTCTCTATTCT
Found at i:180682 original size:14 final size:16
Alignment explanation
Indices: 180663--180716 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 16
180653 AAGTCTATCC
180663 ATATACATAA-TAT-T
1 ATATACATAAGTATAT
*
180677 ATATACTTAAGTATATAT
1 ATATACATAAG--TATAT
180695 ATATACATAAGTAGTAT
1 ATATACATAAGTA-TAT
180712 ATATA
1 ATATA
180717 TACATAAGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
14 9 0.27
16 2 0.06
17 11 0.33
18 11 0.33
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.41
Consensus pattern (16 bp):
ATATACATAAGTATAT
Left flanking sequence: Indices 180163 -- 180662
AAAGGGGTTAACTTGTTCCAATTTTATCTTTATCGAATTTTAATATCAGAATAGCGGATATAGTC
ATGATTCAATGGGTCAGGTCCACTTATTTTTTTCTTTTGTTGATTTCTAATCTTTACAATGCATT
TGATTAGCAAAATGGAAAATAGGAATGTTTGGTGATTCCAGAGACGACTTATCATTATTCATCAT
AATTCTAATTTACTGAACAAATGTTCAACTTTAGAACTATTCACTAAACTACTATACTATAACTC
AGTAACTCAGTAGAATGACAACGTATTATTATACAGTTGGTTACTTTGTTCTATTAAAAATCTCT
CTATTCTCACTTCAAATATGAATACTACGACTGTAGTTTTATGAAAAAAGCCAAAGCCCCTTATC
GGATTTGAACCGATGACTTACGCCTTACCATGGCGTTACTCTACCGCTGAGTTAAAAGGGCCCGT
TTGATTCAACTCCTGAATCAGCCACTATATAGGTAAAGTCTATCC
Right flanking sequence: Indices 180717 -- 181216
TACATAAGTCCATCCAGTAAACTCATAGTGGATAGTGGCTTATTCTTGAATAATCAAATTTATTT
ACCTAGCAAGTCTAGCAATGAATCGTTTCAAAACCGATCCTAATTTCTTTTCTTTTATTGAATGA
AATGATCCCCATCAGAACGAAATTCATTTGATTAATACACGTACACCTATCAATTCGACATAGAT
TCAAGATATTTCATCAAATCATGTGATGAAGAGATTCTATTTGTCCCTGAACTAAATTCTTATAG
AAATAGAAAAAAATTTTCGATAACTTCTTGATCCCTCTTCTCAAATTTTTTGTTTGTGAATTTCC
GAGCTTAGTGCGAGCCCCTTTTTCTTTTTCTTTTCTGACGGACCAACCACTCCCTGAAAGTATTC
CCCGTATTTTTTCTATTTTTTTATTCTATAATTATATTAATAAGAATTTTTTTAGAATAAAATAT
AATAAATATAATAGAATAATATATTAATTCGCTATTGTATTTGTA
Found at i:180712 original size:19 final size:18
Alignment explanation
Indices: 180672--180725 Score: 83
Period size: 19 Copynumber: 3.0 Consensus size: 18
180662 CATATACATA
*
180672 ATAT-TATATACTTAAGT
1 ATATATATATACATAAGT
180689 ATATATATATACATAAGT
1 ATATATATATACATAAGT
180707 AGTATATATATACATAAGT
1 A-TATATATATACATAAGT
180726 CCATCCAGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
17 4 0.12
18 13 0.38
19 17 0.50
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (18 bp):
ATATATATATACATAAGT
Left flanking sequence: Indices 180172 -- 180671
AACTTGTTCCAATTTTATCTTTATCGAATTTTAATATCAGAATAGCGGATATAGTCATGATTCAA
TGGGTCAGGTCCACTTATTTTTTTCTTTTGTTGATTTCTAATCTTTACAATGCATTTGATTAGCA
AAATGGAAAATAGGAATGTTTGGTGATTCCAGAGACGACTTATCATTATTCATCATAATTCTAAT
TTACTGAACAAATGTTCAACTTTAGAACTATTCACTAAACTACTATACTATAACTCAGTAACTCA
GTAGAATGACAACGTATTATTATACAGTTGGTTACTTTGTTCTATTAAAAATCTCTCTATTCTCA
CTTCAAATATGAATACTACGACTGTAGTTTTATGAAAAAAGCCAAAGCCCCTTATCGGATTTGAA
CCGATGACTTACGCCTTACCATGGCGTTACTCTACCGCTGAGTTAAAAGGGCCCGTTTGATTCAA
CTCCTGAATCAGCCACTATATAGGTAAAGTCTATCCATATACATA
Right flanking sequence: Indices 180726 -- 181225
CCATCCAGTAAACTCATAGTGGATAGTGGCTTATTCTTGAATAATCAAATTTATTTACCTAGCAA
GTCTAGCAATGAATCGTTTCAAAACCGATCCTAATTTCTTTTCTTTTATTGAATGAAATGATCCC
CATCAGAACGAAATTCATTTGATTAATACACGTACACCTATCAATTCGACATAGATTCAAGATAT
TTCATCAAATCATGTGATGAAGAGATTCTATTTGTCCCTGAACTAAATTCTTATAGAAATAGAAA
AAAATTTTCGATAACTTCTTGATCCCTCTTCTCAAATTTTTTGTTTGTGAATTTCCGAGCTTAGT
GCGAGCCCCTTTTTCTTTTTCTTTTCTGACGGACCAACCACTCCCTGAAAGTATTCCCCGTATTT
TTTCTATTTTTTTATTCTATAATTATATTAATAAGAATTTTTTTAGAATAAAATATAATAAATAT
AATAGAATAATATATTAATTCGCTATTGTATTTGTATATAAAAAA
Found at i:204346 original size:15 final size:15
Alignment explanation
Indices: 204326--204357 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
204316 AAGGTCCTCT
204326 TTTTTTTTCTTTCTA
1 TTTTTTTTCTTTCTA
204341 TTTTTTTTCTTTCTA
1 TTTTTTTTCTTTCTA
204356 TT
1 TT
204358 GAATCCTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTTTCTTTCTA
Left flanking sequence: Indices 203826 -- 204325
TTAGGCGTAATCAAGATAGGATCATAAAAGAATCATGAAAATTAGAGTGTTGACATTTTTCGTGG
GGGATTAAAATTTAATAAAATTTAAAAGAAAAGAGGGCTCATTTAAATAACTAAATAACAAGTTC
TATCTTTTCTTTTGCTGGAGGAGTTTTGATAGATATGGTTTGCCAAAAACACCGAAATCATAACA
AAAAAATGCATTGTGTAAAAATCCATAGTTTTTTTTTATTCCAGTAAGAATAAGGTTGTCAAGGA
AATAAAAAAGGAAGAAAGAATAATAAGAAATGACACTTTGATTTTGTATAATAAGAATGAAAATA
TTCCTTCGTCTTTTTGTTGTTGCTTTAATAGCAAACCTTTTTTGTTTTCAAATCAGATAAATTGT
TTTAGCTAGGATTCGTTGGAACAAAAAAGGCCCGGCTAGGTAGTGACCAGGCCAGGCCACGGGAG
TAAAAAAGGGGCCTTTCGAACAAAATCAAAGCAAAAAGGTCCTCT
Right flanking sequence: Indices 204358 -- 204857
GAATCCTTCGAGTCCTTACTTGATCTAAATGGAATTGCTAATAAAAGTTGTAGATATATAATATA
GATAAAGACAGAGAAAGAAAGCTTTTTTCAATCCTTATTTCATGTGTAATGTAACATAATAATTA
TCTTTTTCAATTGGGAGAGATGGCTGAGTGGACTAAAGCGGCGGATTGCTAATCCGCTGTACGAG
TTATTCGTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTTTGTTGATGACTTGATATTTTATTTC
TCTTTCAAATTTCGCCAATCCTTTTATTTTTTCTTAGTTAAACATGTCGAATAGATAAAAAACCC
TAAGAAAATTTAAAAATCAAGCAAGGAAAACGAAAAACCTCCTTTTATTCTTCACGTCCAGGATT
ACGCCCCGGATCATTAGATAGGAATCCAAAGATAAAGAGAGAAACAAAGAATATCACTACTGTGT
AAACGAAAAGTTTGAGAGTAAGCATTACACAATCTCCAAGATCCT
Found at i:206959 original size:16 final size:16
Alignment explanation
Indices: 206938--206970 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
206928 AATATTTAAT
206938 ATAGAATATCCAAAAC
1 ATAGAATATCCAAAAC
*
206954 ATAGAATATCCATAAC
1 ATAGAATATCCAAAAC
206970 A
1 A
206971 GTGACAGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.18, G:0.06, T:0.21
Consensus pattern (16 bp):
ATAGAATATCCAAAAC
Left flanking sequence: Indices 206438 -- 206937
TTTGTCTTTGTCCCTAGATAGTTCCCTTTCCGTAAAAGGGATCTTTTTTGATTTCTGATTCAGCA
TTCCCAGAGAATTGGGGGGGGGGAGTAGATAGGTCTTAATCAGCAACGGGAGATATTCATTTAAA
TATCTGTGTCTGTCCGAATCTCATTAACAACGAATCAAGTTACATATGTAACCGATGTTTTTTTG
ACCTTTTTAGGTATTTCGCGTTTGGCTCTAATGAAGAATTGTAAATCGATGTAACGATTGATACG
GGGTAATTCATATATTTTTTTTAGTCACTTTATGCCAAGATTGCAGAAAGATTACTTAATTCCAG
GTTAAATAATAAAAATACATATAAAATGAGGAAATGCTTAGTTTAACTTAATATGTAATATATAT
GTATTTTTATTATTCGATTTCCTTCTATTTTAGTGACAACGTTCAGTGACAACAGCCTTTCCATT
TTTGTGAAAAAGAAATGGAATCCCTTAAATATTTCAATATTTAAT
Right flanking sequence: Indices 206971 -- 207470
GTGACAGTTGTTCAATCTATCTGATAGATACGAAAAACCCATACTCGTTCATCTGATTAATAAAA
TAAGAATCGAACGACTAAGGACCTAAATCTTCTCTTATATCAGTCTTTTTTATTCATCTCACGAA
AAAATTTGGGTTTCTTGTTCAATCTATTTATCAGCTTTAAATCATTGATGATTCAATTCGAAAAG
AAAGAGATATTTCTCTTTTTTTTATGATGATCAAGTGTAGTCTTTACCGTAAAACTTTATTCCAA
AAATGATGTCGAAATAGGAAACCCGTTCGATTATAAAAATTTTGAATGATTCCTTATGAGTTGAA
TCTTTGGTATTCAAATAAGTCGGAGATGGGTCAATCTCTTCTATTGAGTCACTTGAAGATGCAGG
GTTGAAAAGAATTCATTTATTCGTGTTATTTATGTTAGTTATGTTATTTATGTTATTTCTGTTAG
TTTGTTTTTTTATAAAAAAAGTTGCATTTATACAATAAAAGGTGG
Found at i:207396 original size:9 final size:9
Alignment explanation
Indices: 207384--207424 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
207374 CATTTATTCG
207384 TGTTATTTA
1 TGTTATTTA
*
207393 TGTTAGTTA
1 TGTTATTTA
207402 TGTTATTTA
1 TGTTATTTA
*
207411 TGTTATTTC
1 TGTTATTTA
207420 TGTTA
1 TGTTA
207425 GTTTGTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.20, C:0.02, G:0.15, T:0.63
Consensus pattern (9 bp):
TGTTATTTA
Left flanking sequence: Indices 206884 -- 207383
CTTTCCATTTTTGTGAAAAAGAAATGGAATCCCTTAAATATTTCAATATTTAATATAGAATATCC
AAAACATAGAATATCCATAACAGTGACAGTTGTTCAATCTATCTGATAGATACGAAAAACCCATA
CTCGTTCATCTGATTAATAAAATAAGAATCGAACGACTAAGGACCTAAATCTTCTCTTATATCAG
TCTTTTTTATTCATCTCACGAAAAAATTTGGGTTTCTTGTTCAATCTATTTATCAGCTTTAAATC
ATTGATGATTCAATTCGAAAAGAAAGAGATATTTCTCTTTTTTTTATGATGATCAAGTGTAGTCT
TTACCGTAAAACTTTATTCCAAAAATGATGTCGAAATAGGAAACCCGTTCGATTATAAAAATTTT
GAATGATTCCTTATGAGTTGAATCTTTGGTATTCAAATAAGTCGGAGATGGGTCAATCTCTTCTA
TTGAGTCACTTGAAGATGCAGGGTTGAAAAGAATTCATTTATTCG
Right flanking sequence: Indices 207425 -- 207924
GTTTGTTTTTTTATAAAAAAAGTTGCATTTATACAATAAAAGGTGGGGTCTTGCTAAGATTTCTT
CAGAAAAATCTTTACCATCTATGTATAGAAGAAAAAGGTATAGATTAATATGTCTATGTACCGAC
TGAACCAATGACTATTCATGATTCCATAATTGAATCAATTCCATACTGGCTCCAAATTAGAGGAA
TGTTATGGTAAAACTTCGTTTGAAACGATGTGGTAGAAAGCAACGTGCGACTTGAAGGACACGAT
CCGGTGTGGATTCTCTTATTCTTACATCCGCCATTTTATATAGGAATGAAGGTGCTCTTGGCCCG
ACATCGTTTGTTCTGTTCCACTAGAACCCCTCTTTTTGTTGGGTTGTAATGTAAATAGTACATGA
TGGAGCTCGAGTAGTAAAGTATTGATTCAGCTTTCAGGGGCAAGGATCTAGGGTTAATGCCAATC
AATAAATTGGAACAACTTCGTAAATATATCATCAATATAGAAATC
Found at i:209078 original size:22 final size:23
Alignment explanation
Indices: 209037--209084 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
209027 GGAATAAAAA
209037 ATTTTTATTCTACTTAATTATTG
1 ATTTTTATTCTACTTAATTATTG
209060 ATTTTTATTCTACTT-ATTATTG
1 ATTTTTATTCTACTTAATTATTG
209082 ATT
1 ATT
209085 GAATAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.40
23 15 0.60
ACGTcount: A:0.25, C:0.08, G:0.04, T:0.62
Consensus pattern (23 bp):
ATTTTTATTCTACTTAATTATTG
Left flanking sequence: Indices 208537 -- 209036
ACTTACATCTATCCCAATGAGCCGTCTATCGAATCGTTGCAATTGATGTTCGATCCCGAAGAGAA
GGAAGAGATCTTCGGAAAGTGGGTTTTTATGATCCGATAAAGAATCAAAGTTGTTTAAATGTTCC
CGCTATTCTATATTTCCTTGAAAAAGGCGCTCAGCCGACAGGAACTGTTCGGGATATTTTAAAGA
AGGCGGAGGTTTTTAAGTAACTTTGCCCTAATCAAAATCAAACGAAATTCAATTAAGGAAATAAA
AAAGGGGGCAGTGATTCGTATAAAATTTTGTATAACTTTTCTATACTTTGTTTTTTATTCCCCCC
CCTTTTTTGCGCCCTATTCGTATCTATTTCTCATTGATTGCTTCTATAGAATCTAATATTCTATA
ACGACATAACCCCAGTTGGTTGATCCTAGAAATGTAAAATTCTGGCATTTCCTTCAATCGGGCGG
CTTTCGTTGGAACTTTACTAACACGTAATAAACAAGGAATAAAAA
Right flanking sequence: Indices 209085 -- 209584
GAATAAATTTATTGATTGAATAAATCTAAATCCGAGATTTTTTTCTACTTCTTCCTTATTTATTC
CCCCATCTAAACTTTTTGCATCTATGTAGTGCCAATCCAACACAAGTCCTTTTTTTTTTGATTAA
TATTATTGAAATTGAATTTCTTTTGTTTTTTCCATTGTATTCTTTTCTCAACATTTATATTGACA
ACAGGGTATCGAACAAATATAATTATCGTGATAAGCGGGTCGATTTATTTCCGTGCCATAGGTTT
GGTTTTTACCTTACATCATTCAAATGATGGGTTCGTTGGATTCGCTTTGATACAAGAAGGTTTTT
TTGATTGAAAGGTCGATAACATAAGAGATGGTTTATAAATTTTTACATTTATTTATCTTTTTATT
TTATCGGAGAATTTCTTGTATTTTCGTCTCATCTATTCATTTTGATGTTCCGAATCAATTTCAAA
ATGTGTTTTTTTTGATTTTTTATTTCTTAGTTCAATGGTTTGATT
Found at i:209098 original size:17 final size:17
Alignment explanation
Indices: 209076--209109 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
209066 ATTCTACTTA
209076 TTATTGATTGAATAAAT
1 TTATTGATTGAATAAAT
209093 TTATTGATTGAATAAAT
1 TTATTGATTGAATAAAT
209110 CTAAATCCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (17 bp):
TTATTGATTGAATAAAT
Left flanking sequence: Indices 208576 -- 209075
CAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGGAAAGTGGGTTTTTATGATCCGATA
AAGAATCAAAGTTGTTTAAATGTTCCCGCTATTCTATATTTCCTTGAAAAAGGCGCTCAGCCGAC
AGGAACTGTTCGGGATATTTTAAAGAAGGCGGAGGTTTTTAAGTAACTTTGCCCTAATCAAAATC
AAACGAAATTCAATTAAGGAAATAAAAAAGGGGGCAGTGATTCGTATAAAATTTTGTATAACTTT
TCTATACTTTGTTTTTTATTCCCCCCCCTTTTTTGCGCCCTATTCGTATCTATTTCTCATTGATT
GCTTCTATAGAATCTAATATTCTATAACGACATAACCCCAGTTGGTTGATCCTAGAAATGTAAAA
TTCTGGCATTTCCTTCAATCGGGCGGCTTTCGTTGGAACTTTACTAACACGTAATAAACAAGGAA
TAAAAAATTTTTATTCTACTTAATTATTGATTTTTATTCTACTTA
Right flanking sequence: Indices 209110 -- 209609
CTAAATCCGAGATTTTTTTCTACTTCTTCCTTATTTATTCCCCCATCTAAACTTTTTGCATCTAT
GTAGTGCCAATCCAACACAAGTCCTTTTTTTTTTGATTAATATTATTGAAATTGAATTTCTTTTG
TTTTTTCCATTGTATTCTTTTCTCAACATTTATATTGACAACAGGGTATCGAACAAATATAATTA
TCGTGATAAGCGGGTCGATTTATTTCCGTGCCATAGGTTTGGTTTTTACCTTACATCATTCAAAT
GATGGGTTCGTTGGATTCGCTTTGATACAAGAAGGTTTTTTTGATTGAAAGGTCGATAACATAAG
AGATGGTTTATAAATTTTTACATTTATTTATCTTTTTATTTTATCGGAGAATTTCTTGTATTTTC
GTCTCATCTATTCATTTTGATGTTCCGAATCAATTTCAAAATGTGTTTTTTTTGATTTTTTATTT
CTTAGTTCAATGGTTTGATTGCCTTGTCTAATCTTTTATTTTGAT
Found at i:209656 original size:16 final size:16
Alignment explanation
Indices: 209637--209667 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
209627 ACCCTTTTGC
209637 TTATTTATTATTTTAA
1 TTATTTATTATTTTAA
209653 TTATTTATTATTTTA
1 TTATTTATTATTTTA
209668 GACTTATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTTATTATTTTAA
Left flanking sequence: Indices 209137 -- 209636
TCCTTATTTATTCCCCCATCTAAACTTTTTGCATCTATGTAGTGCCAATCCAACACAAGTCCTTT
TTTTTTTGATTAATATTATTGAAATTGAATTTCTTTTGTTTTTTCCATTGTATTCTTTTCTCAAC
ATTTATATTGACAACAGGGTATCGAACAAATATAATTATCGTGATAAGCGGGTCGATTTATTTCC
GTGCCATAGGTTTGGTTTTTACCTTACATCATTCAAATGATGGGTTCGTTGGATTCGCTTTGATA
CAAGAAGGTTTTTTTGATTGAAAGGTCGATAACATAAGAGATGGTTTATAAATTTTTACATTTAT
TTATCTTTTTATTTTATCGGAGAATTTCTTGTATTTTCGTCTCATCTATTCATTTTGATGTTCCG
AATCAATTTCAAAATGTGTTTTTTTTGATTTTTTATTTCTTAGTTCAATGGTTTGATTGCCTTGT
CTAATCTTTTATTTTGATTCTGATTGTATCTACATACCCTTTTGC
Right flanking sequence: Indices 209668 -- 210167
GACTTATTCTATTCGGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAAGTGCGGCTAGGATC
TTTTACACATTTGGATGAAGCGAAGGATTCGTCCATACCATCGGTAAAGTTTGGAAGACCACGAC
TGATCCTGAAAGGGAATGAATGGAAAAAATAGCATGTCGTATCAACGAAGAGTTCTGAGAATATT
TCATTCTTTCCGGATCGGTCCAAACCCTTGTTTGATTTTTTGAAACGGAGCAAAAAAATGAATTC
AATTTCAAGTTGGGTCGAATGAATAAATGGATAGAGATAGAGCCTTGTGGCTTCAATTAATTGAT
TATAGGGAAAAAAGCAACGAGCTTCTGTTCTTAATTTGAATGATTACCCGATCTAATTAGACGTT
AAAAATATATTAGTGCCTGATACGGGAAGAGCTTCTCCCATGGAGTGGATTCTTTATTTTTTAAT
GAATCCTAACTATTATCATTTTCTATTATGGAATGGAAATGCTTG
Found at i:268180 original size:18 final size:18
Alignment explanation
Indices: 268157--268216 Score: 120
Period size: 18 Copynumber: 3.3 Consensus size: 18
268147 TTGATGATAT
268157 CGATATTGATGCTAGTGA
1 CGATATTGATGCTAGTGA
268175 CGATATTGATGCTAGTGA
1 CGATATTGATGCTAGTGA
268193 CGATATTGATGCTAGTGA
1 CGATATTGATGCTAGTGA
268211 CGATAT
1 CGATAT
268217 CGATCGTGAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (18 bp):
CGATATTGATGCTAGTGA
Left flanking sequence: Indices 267657 -- 268156
GATTCGATTGATGATGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAG
GATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGCTATC
AAATGATTGAACAACCGGGAGCAATTTACTTACGATACTTAGTTGACATTCATAAAAAGTATCTA
ATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTATCAGAC
AATCACTTATTCACAAACCTCGTGTGGGGCTAATAGTTTGAATTTCCCATCTCATGGAAAACCCT
TTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGTATTTTAGTGATAGGTTCTATAGGAACTGGA
CGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACGGTATTTCTGAA
CAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGATAT
Right flanking sequence: Indices 268217 -- 268716
CGATCGTGACCTTCATACGGAGCTGGAACTGCTAACTATGGATATGATGCCGGAAATAGACCGAT
TTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAAC
ATTCATGATCTGGATGTGAATGAGTCGAATTACTTCTCCCTCGGTCTATTAGTGAACCATCTCTC
CAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTCATATTCCCCAAA
AAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACGTGCATTAAGATACGAAGGCTTCTT
ATTCCACAACAACGAAAGCACTTTTTCACCCTTTCATATACTAGGGGATTTCGCTTGGAAAATAA
AATGTTCCATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATGCACGAGATCTTGTAGCAC
TTACCAATGAGGCCCTATCGATTAGTATTACACAGAAGAAATCAA
Found at i:270944 original size:17 final size:17
Alignment explanation
Indices: 270922--270955 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
270912 GGAGAATGCC
270922 TTATATAGATATCCAAT
1 TTATATAGATATCCAAT
270939 TTATATAGATATCCAAT
1 TTATATAGATATCCAAT
270956 CTATCAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
TTATATAGATATCCAAT
Left flanking sequence: Indices 270422 -- 270921
TACGGGCGGGCATTTTACCAGAGGTTTCTAATCTACCCCTGTGTGATTCCTGTTGAAGCATATAC
TCGGGGGGTGGGTTGGGTGCAGGGCGGACGATTTTAAAGCAGACTCCCCATTCATTAGATAGAGA
AGATCACCAAGATTTAGTGATCCGCTGCCGAACTTATTCAAATTCCAAGAGCTCGGATCGAATCG
GTATTGATATACCGATTCGATCCGAGCTCTCTTATGGAATTGCCCATTCAATGAGCATTCTCAAT
ATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTC
TACCATTTCACCACCAAGGCATCTTGAAAGTGAATCATATTCCATGAATATGATATCTATCTAGT
GTGATGTATGGAATATATGACAAAGGTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCG
AGTTGGACATCCAATTGCTTCGATTTGAATTATCCGGAGAATGCC
Right flanking sequence: Indices 270956 -- 271455
CTATCAAAAAAAAAGATGGACACAATCAAACCCATTTCTCGATTCAATAGAAGCCCAAAGAGGTG
AATAGGGTCCCAAATAACGAGAGATATGTAAAAAGCAGGTCCGATTACTACGCCTATTCCTAATC
CTAAATGTAATGTAACGACGTAGGGATCCATATGTAAACATAGTCTCTATTTAGATACGCTCAAA
TGACCCCTTCTCATAATGAGAATGTATATAACTCTATTCCGGTCTGGTCCGGTATGGAATGAACT
TATAATCATGGAATCGACTCGATCATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCC
CATTTTGGGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATTTTGAACTAAG
AAATAGACCCTAGAAGCTAAAAAAGGGTATCCTGAGCAATTGCAATAATCGGGTTCATTGATATT
CCTGGTATAGTAGATGCTATCACACATACAATCATACTCAATTCG
Done.