Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MZ826164
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 317650
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:7023 original size:22 final size:22
Alignment explanation
Indices: 6998--7040 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6988 GCGGCAACAG
*
6998 AATATCCTTATTTTA-ATCTAGA
1 AATATCC-TAATTTACATCTAGA
7020 AATATCCTAATTTACATCTAG
1 AATATCCTAATTTACATCTAG
7041 GAGGTCTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (22 bp):
AATATCCTAATTTACATCTAGA
Left flanking sequence: Indices 6498 -- 6997
ACTTCAATAGGCCTATCAAGCAATCTCGTTCAATCCATAAACAGGTCCCCCTACGAATATACAGT
AGTAGTCTTCTCCAGTACTTACTAATACACGTCTAAATCCCTCTTTTACACTGGGCGAAGCATGA
TGAAAATAAGGAAGATATTTTATCACTACTTTTAGCTGCTTGCCTCACTAACCCGCCCTATTTGA
GTTTGAGTAAGGGGGGGAACCACAAGTAGCCAGGTCTTCTCAAAACCATAACTATCAAATTCTTC
GTTATTCCGTGTTAGGCGAAGCATTAAGAGAAACCCGAAAGGAAGCTCAAAGTCCAATTTTTAAA
TATAGTCAGATTCATTTCCCTTCTTTTAAGCTAGCTTGCTTGGTTTGGTATTCTATTTTCGAATA
TAGTAACGCAACCTTATGTGCTATCTCGGATAGTTGGGGGCTGGTATCCACTTGGGGTCACATCA
TGCTTGCATGATTGGGTATTGCACTATGAGAGTATGCGGCAACAG
Right flanking sequence: Indices 7041 -- 7540
GAGGTCTATATTTGCTGTTAAAGCTAGTGGGAAAGATATACCTTGGTTTTATATAAGACATCACT
ATATGGCGATACCGATCAATATAATATTTGCTAGACTAATAATGGAACATTTACTATAAGAGGAT
AATCGTTGGTGAGTAAAGAAAGCAAAACAAAAAAATTTCCTTACCCTTTCTACTTTGGACGTGCC
CGTGCCATTCTATATTTCATTACCGTTTTAATATCAAAATATAGATATCTTTCTTCTTAATTGTC
CAATGAACACTAATAAAATCACCGGCCCTGGTTAGGATGTCGAGATCGAGCCTTCTGCTGCATCC
TTTTTTAATCCATCCCCCACTGTGAACTCCTGTCTGTCATTCATCCAGTTGTGACCGCTCTCGCC
CCGTATCTCTCAACAAAGCCTCCCCCCGAGAGTGCCTTCGCTACCGCTCTTTGTACATCCGGTTA
AGGTACTTCCCTGCGCACGGGAATTACGGAGAATCTTGGGACCCT
Found at i:58597 original size:18 final size:19
Alignment explanation
Indices: 58563--58599 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
58553 AGGGATTTCT
58563 CTAGTAGGTAGCGACAAGA
1 CTAGTAGGTAGCGACAAGA
*
58582 CTAGTA-GTATCGACAAGA
1 CTAGTAGGTAGCGACAAGA
58600 AGCTACATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (19 bp):
CTAGTAGGTAGCGACAAGA
Left flanking sequence: Indices 58063 -- 58562
TCCTGAGGCTCATCCCTCGATGTGAATTGACCCTTTGCCTTTGATTCATCATCTTAGTAGTTTTG
CCTTGAACCTGCCGATGCAAACTGAGATTCGGAATCTGACCTTGCAACTAAGCGAGGGCTGAGGT
AACGAGTGAAATCGCTCGACTAAAAGGAGAGGAGATGAAAAAGAATTCCTGTCTTTAGAAGAAAA
TCCCACTAAACTACACTTGTACGCTTGACATGAAAAGTAGAGGCAACTTGTTATAGACGTCAAAG
GCCGAGCCTCAACCAGCAAAGGGGGACAGCCATGCCAATCCAAGCAGAGCAACTAGAAGCCCACT
CTACCTTTCTTTCTTTACCTTAGACTTCGTTCTTCAAGGAGACCCGTGTGCATTTCCTCTGTTCT
GTGCTCTTGAACCCTTGATTCCCTTGTGCCTTTAGTTGAAGTATAGGTCGTCGATTCAATCTATC
TTGATGGGATTTTTGCTTCTGTTGAGTGGTATAGAAGGGATTTCT
Right flanking sequence: Indices 58600 -- 59099
AGCTACATCAATAGCTGAAACTTGTTTTCGGGTAGGCTTGGAGTCAGAAGTCCTCTCTTTCCCAA
CCAAATAAGCACTTTTGCAAAGTTCACCTTCCCGCGCAAGACTTGCGGATAACAATCAGACCTTA
CCAGGGACAGGGACCAGACTATAGAGCCTAATTAAAAAGGAATTCGGGCTTGCTTTCTCAATTCA
CATCTATGAGCGATGATTCCTCTATCTCTTGCTCGCTTCGATCGGACTCTGACAGCTTAGGGAAG
AATGATGGGTCGCTAACAAGGCCCCTAAATGACCGGCCTACCTTTTTTTTTCCCAATCTGTCACT
TGCTCGTCCCTCTCTCATGAAAGATTGTCTCTCCTCTCCCGGCGGCTTTGACTCATGTCTATAGC
CAGTTGCTAAGACGATTCCCATTCAAGCATTCTCATTCAACGGTCTATCAATGCTGCCTTCTTTT
GTTCAAAATTCCTTTCTTTCTACTAGTTCTTACATAAGAAATTTG
Found at i:114204 original size:14 final size:15
Alignment explanation
Indices: 114174--114204 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
114164 GAATAAATGA
114174 AGGGAAATCCAAGCT
1 AGGGAAATCCAAGCT
114189 AGGGAAATCC-AGCT
1 AGGGAAATCCAAGCT
114203 AG
1 AG
114205 CTCGGATGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (15 bp):
AGGGAAATCCAAGCT
Left flanking sequence: Indices 113674 -- 114173
TCGGGGCATGACTTCCCTTCTAGTCGCGACGCCATCGACCAACACTATGACTTACAGCTATACAA
GAGGAGATCCTTCACACATTCACGTCAGTGAATATAAGAGAAGAGTTACTCACTCGGCCGTCCCA
CTTAATTACGAAATGAAAATCTAGTAAATAACAAAGTAGTTTTCGTAGAGATTGAGAAAGCGTAA
GTGAAGCGGTGGTGGTGATCCAGTCTTCAAAGAGAATCTCTCGACGGTCTCGAAGGTCTAGCTAG
AAGGTCGTCTAAGCCACTATGGAATAGTTTTAGGAATCTATCAATATTATGGTACGAAACGGCAT
TAATGTCTTAAACCTTAAACCACTTGGCCATTCAAAATAAGTGAATTTCTTCTTGAGCTATAGAC
TCAAGAAATGGCTTTTCTTTTCTTTCGCATGATGCTAACGAAACCGAAACCCTAGCTAGTAGGTA
GGTAAGGCTTTCGGCTTTCCTCGGGCTCGGGGATAGAATAAATGA
Right flanking sequence: Indices 114205 -- 114704
CTCGGATGCTAAGAAACATCGTAAGAGAAGTCGTCCTGACAAACGGTTATTTCAGACCTACGTGG
AAAGCTTTCGACAGAAAAAAGAAAGTGATACTCGTGCTGCTAGAGGAATTGATCCGAAAGGTGTT
ACATCACTAAGGAGATACTTCTCCTGATCACTGGCACTTAGTACGAACAACTACCTTAGCACTAC
GTTCTTACTTTCCGATTGGAGTTTTCACACAAGTAGATCGCTACCCAGGGCAGATGCCGGGAAGC
AAGGTGGTTAAAAGAGTTCTTGCTCCAATCTCTTCGGCGGATCCAACTAAGGAATGAACTGGCTT
ATTTGTAGTTTTAGGGGAGGAATCCTTTGTTTTTTTAATACTATATTATATGGTTTTTCCATAAA
TCATTGGTGTAGCACGTAGGTGGATGAACCCTTATAACATGAGATCCGTGGTAACCGACTCTCCT
CAATGGGATCATCAATACAAGTACCCACCCACCACCATGAGCAAG
Found at i:117686 original size:16 final size:16
Alignment explanation
Indices: 117667--117697 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
117657 ACCCTTTTGC
117667 TTATTTATTATTTTAA
1 TTATTTATTATTTTAA
117683 TTATTTATTATTTTA
1 TTATTTATTATTTTA
117698 GACTTATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTTATTATTTTAA
Left flanking sequence: Indices 117167 -- 117666
CAACCCATTTCTTACATAACCGATTCTTTCCCTGAATAGGTTGCTAGTGTTCGGTCCTGATCCAA
GATGAGGAACCAAACCAAGTCTTGAAAGTCTTCCTCAAGTGAGTACTGGTCCACCTATCCAGTAT
GTGAGGAAGTTTCTCCCATGGAGCTAGCTTTTGTATGTTACTAAGCCGGATCGCCCATACTAGGT
TCTTTTTCCACGCTATGTGACTAGCCGACGATGATGGGACTAGTAGACGCAGCAGACTGAACTTG
TCTCATGAAATGGTTCTTCTCGACAATCCATTTATTGTAGGTTAGATTCAGCCCTATTAAGTAAA
GGCAGACTGACGCTCTTGCGTCTGCATGATCTGACTTCTATGACTTGTAGTATAAAATCAAAAAA
GACTAAAGCCAAGTCCTTTTTTTTTTGATTTTATATTTCTTAGTTCAATGGTTTGATTGCCTTGT
CTAATCTTTTATTTTGATTCTGATTGTATCTACATACCCTTTTGC
Right flanking sequence: Indices 117698 -- 118197
GACTTATTCTATTCGGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAAGTGCGGCTAGGATC
TTTTACACATTTGGATGAAGCGAAGGATTCGTCCATACCATCGGTAAAGTTTGGAAGACCACGAC
TGATCCTGAAAGGGAATGAATGGAAAAAATAGCATGTCGTATCAACGAAGAGTTCTGAGAATATT
TCATTCTTTCCGGATCGGTCCAAACCCTTGTTTGATTTTTTGAAACGGAGCAAAAAAATGAATTC
AATTTCAAGTTGGGTCGAATGAATAAATGGATAGAGATAGAGCCTTGTGGCTTCAATTAATTGAT
TATAGGGAAAAAAGCAACGAGCTTCTGTTCTTAATTTGAATGATTACCCGATCTAATTAGACGTT
AAAAATATATTAGTGCCTGATACGGGAAGAGCTTCTCCCATGGAGTGGATTCTTTATTTTTTAAT
GAATCCTAACTATTATCATTTTCTATTATGGAATGGAAATGCTTG
Found at i:131773 original size:5 final size:5
Alignment explanation
Indices: 131763--131802 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
131753 AAGCTCTTCC
**
131763 CTTTA CTTTA CTTCC CTTTA CTTTA CTTTA CTTTA CTTTA
1 CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA
131803 AAAGGGCTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.17, C:0.25, G:0.00, T:0.57
Consensus pattern (5 bp):
CTTTA
Left flanking sequence: Indices 131263 -- 131762
TAAAACCTTAATCATCATGAATTGAATTTATATGGGCATACTGAACTGATCTCCTTTGGGTATCC
TCCGCTGGGGAAAGAACTAAGATGGAAGGACGGACGATCGACAGGAAAGAAAGTGACTGCCCTAT
CCCTCCCTTGATGGACCCCTCTAATTTGGTCAATTTGAATCTTGTGAAACTTCTGAACTTGGAAA
ATGTGGAGGTCATTGCTCATACCAATGAATTGAAGCGGATGTTGAGCTTGCCATGTTCAGTACTT
CAAACTGAAAAAGAAAAAGTTCCAAACCGGGGCTAAATGCTTTTTTTTAAAAGAAGGGCTTGCTT
CAGATCGGAATAGAATGCGCACAGAGCTTGTCTAGTTACTTCTAAAAAGGTGATGGCACAGTCCC
CTTAAGAAAAAGCTGTTCGAGAATGCCCTCTTGCTGCAAGAATGGCTTGTGACAGTGAATCAATA
GTAAAAGTAGACATGATACGAATGGAATTGAGAAGAAGCTCTTCC
Right flanking sequence: Indices 131803 -- 132302
AAAGGGCTTGGTCTTCCCCGGCTTACCATTCAAAAAAAGGAAAGTCTCATCTTGTTCACATCATA
GGCAGTAGAAGAGTCCTATCCTGGTCTTAGTTTGTTTGACTCGGTGGTTAAGCAGTGGATGTGCA
AAGATTAACAGAGATCTCATAGGTGCCCTTCTAATCTAAGGCTAAGAGAAATAAAAGATGGCGCA
CGGCGCGTCAGGATGGATAAGGCTTTTGAATCAATAGATGTGTCCGCTTCGCTCTTGTCCATCAG
GTGCAGGTGTAGTACCGTCAAGTGATTTTCTTTTTGCATAAAATCTTATTGTCGCCCCAAAGGAA
GAATCGTTCGTCAGAAAACGCGTACGAACAAAGAGTTCTTGCTCTTTTGGCAGTTGGTGCGTCTA
CTCGTTGGCTACTTTATACCAAACGAGCACCTTCTGCATGGCTGAACTTTGCCTTATGTGGCTTG
GCGAAACAACATCTTTCTATAAAGCTTGCTCCATTGCTTGCTTCT
Found at i:131778 original size:15 final size:15
Alignment explanation
Indices: 131758--131802 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
131748 AGAAGAAGCT
131758 CTTCCCTTTACTTTA
1 CTTCCCTTTACTTTA
131773 CTTCCCTTTACTTTA
1 CTTCCCTTTACTTTA
**
131788 CTTTACTTTACTTTA
1 CTTCCCTTTACTTTA
131803 AAAGGGCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.16, C:0.29, G:0.00, T:0.56
Consensus pattern (15 bp):
CTTCCCTTTACTTTA
Left flanking sequence: Indices 131258 -- 131757
CATGATAAAACCTTAATCATCATGAATTGAATTTATATGGGCATACTGAACTGATCTCCTTTGGG
TATCCTCCGCTGGGGAAAGAACTAAGATGGAAGGACGGACGATCGACAGGAAAGAAAGTGACTGC
CCTATCCCTCCCTTGATGGACCCCTCTAATTTGGTCAATTTGAATCTTGTGAAACTTCTGAACTT
GGAAAATGTGGAGGTCATTGCTCATACCAATGAATTGAAGCGGATGTTGAGCTTGCCATGTTCAG
TACTTCAAACTGAAAAAGAAAAAGTTCCAAACCGGGGCTAAATGCTTTTTTTTAAAAGAAGGGCT
TGCTTCAGATCGGAATAGAATGCGCACAGAGCTTGTCTAGTTACTTCTAAAAAGGTGATGGCACA
GTCCCCTTAAGAAAAAGCTGTTCGAGAATGCCCTCTTGCTGCAAGAATGGCTTGTGACAGTGAAT
CAATAGTAAAAGTAGACATGATACGAATGGAATTGAGAAGAAGCT
Right flanking sequence: Indices 131803 -- 132302
AAAGGGCTTGGTCTTCCCCGGCTTACCATTCAAAAAAAGGAAAGTCTCATCTTGTTCACATCATA
GGCAGTAGAAGAGTCCTATCCTGGTCTTAGTTTGTTTGACTCGGTGGTTAAGCAGTGGATGTGCA
AAGATTAACAGAGATCTCATAGGTGCCCTTCTAATCTAAGGCTAAGAGAAATAAAAGATGGCGCA
CGGCGCGTCAGGATGGATAAGGCTTTTGAATCAATAGATGTGTCCGCTTCGCTCTTGTCCATCAG
GTGCAGGTGTAGTACCGTCAAGTGATTTTCTTTTTGCATAAAATCTTATTGTCGCCCCAAAGGAA
GAATCGTTCGTCAGAAAACGCGTACGAACAAAGAGTTCTTGCTCTTTTGGCAGTTGGTGCGTCTA
CTCGTTGGCTACTTTATACCAAACGAGCACCTTCTGCATGGCTGAACTTTGCCTTATGTGGCTTG
GCGAAACAACATCTTTCTATAAAGCTTGCTCCATTGCTTGCTTCT
Found at i:142426 original size:16 final size:16
Alignment explanation
Indices: 142396--142447 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
142386 GACTTAAGTA
142396 TATATATACTACTTATG
1 TATATATA-TACTTATG
*
142413 TATATATATACTTAAG
1 TATATATATACTTATG
142429 TATATA-ATA-TTATG
1 TATATATATACTTATG
142443 TATAT
1 TATAT
142448 GGATAGACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
14 9 0.27
15 3 0.09
16 13 0.39
17 8 0.24
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (16 bp):
TATATATATACTTATG
Left flanking sequence: Indices 141896 -- 142395
CAATTCGCTCACTTCGGGAAGAGCGGACGGAAAGAGGAGGCCTTTGCTCTATCCGCTTCTTCCTC
TTCCCAGGAATGAACAATTGGATAAAAAAAAAGAAAAAATACGGGGAATACTTTCAGGGAGTGGT
TGGTCCGTCAGAAAAGAAAAAGAAAAAGGGGCTCGCACTAAGCTCGGAAATTCACAAACAAAAAA
TCTGAGAAGAGGGATCAAGAAGTTATCGAAAAATTTTTTCTATTTCTATAAGAATTTAGTTCAGG
GACAAATAGAATCTCTTCATCACATGATTTGATGAAATATCTTGAATCTATGTCGAATTGATAGG
TGTACGTGTATTAATCAAATGAATTTCGTTCTGATGGGGATCATTTCATTCAATAAAAGAAAATA
AATTAGGATCGGTTTTGAAACGATTCATTGCTAGACTTGCTAGGTAAATAAATTTGATTATTCAA
GAATAAGCCACTATCCACTATGAGTTTACTGGATGGACTTAAGTA
Right flanking sequence: Indices 142448 -- 142947
GGATAGACTTTACCTATATAGTGGCTGATTCAGGAGTTGAATCAAACGGGCCCTTTTAACTCAGC
GGTAGAGTAACGCCATGGTAAGGCGTAAGTCATCGGTTCAAATCCGATAAGGGGCTTTGGCTTTT
TTCATAAAACTACAGTCGTAGTATTCATATTTGAAGTGAGAATAGAGAGATTTTTAATAGAACAA
AGTAACCAACTGTATAATAATACGTTATCATTCTACTGAGTTACTGAGTTATAGTATAGTAGTTT
AGTGAATAGTTCTAAAGTTGAACATTTGTTCAGTAAATTAGAATTATGATGAATAATGATAAGTC
GTCTCTGGAATCACCAAACATTCCTATTTTCCATTTTGCTAATCAAATGCATTGTAAAGATTAGA
AATCAACAAAAGAAAAAAACCCGAAGTCTTTTTCTTGCTTCGACCCGTGGAAAGATATACTCTGG
AGTTTTAGATTTCTCGGAAGGAAGGGGAGATATAATAAAGAAGAC
Found at i:142438 original size:19 final size:19
Alignment explanation
Indices: 142387--142424 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
142377 TACTGGATGG
142387 ACTTAAGTATATATATACT
1 ACTTAAGTATATATATACT
*
142406 ACTTATGTATATATATACT
1 ACTTAAGTATATATATACT
142425 TAAGTATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (19 bp):
ACTTAAGTATATATATACT
Left flanking sequence: Indices 141887 -- 142386
CTCTACATGCAATTCGCTCACTTCGGGAAGAGCGGACGGAAAGAGGAGGCCTTTGCTCTATCCGC
TTCTTCCTCTTCCCAGGAATGAACAATTGGATAAAAAAAAAGAAAAAATACGGGGAATACTTTCA
GGGAGTGGTTGGTCCGTCAGAAAAGAAAAAGAAAAAGGGGCTCGCACTAAGCTCGGAAATTCACA
AACAAAAAATCTGAGAAGAGGGATCAAGAAGTTATCGAAAAATTTTTTCTATTTCTATAAGAATT
TAGTTCAGGGACAAATAGAATCTCTTCATCACATGATTTGATGAAATATCTTGAATCTATGTCGA
ATTGATAGGTGTACGTGTATTAATCAAATGAATTTCGTTCTGATGGGGATCATTTCATTCAATAA
AAGAAAATAAATTAGGATCGGTTTTGAAACGATTCATTGCTAGACTTGCTAGGTAAATAAATTTG
ATTATTCAAGAATAAGCCACTATCCACTATGAGTTTACTGGATGG
Right flanking sequence: Indices 142425 -- 142924
TAAGTATATAATATTATGTATATGGATAGACTTTACCTATATAGTGGCTGATTCAGGAGTTGAAT
CAAACGGGCCCTTTTAACTCAGCGGTAGAGTAACGCCATGGTAAGGCGTAAGTCATCGGTTCAAA
TCCGATAAGGGGCTTTGGCTTTTTTCATAAAACTACAGTCGTAGTATTCATATTTGAAGTGAGAA
TAGAGAGATTTTTAATAGAACAAAGTAACCAACTGTATAATAATACGTTATCATTCTACTGAGTT
ACTGAGTTATAGTATAGTAGTTTAGTGAATAGTTCTAAAGTTGAACATTTGTTCAGTAAATTAGA
ATTATGATGAATAATGATAAGTCGTCTCTGGAATCACCAAACATTCCTATTTTCCATTTTGCTAA
TCAAATGCATTGTAAAGATTAGAAATCAACAAAAGAAAAAAACCCGAAGTCTTTTTCTTGCTTCG
ACCCGTGGAAAGATATACTCTGGAGTTTTAGATTTCTCGGAAGGA
Found at i:146378 original size:39 final size:39
Alignment explanation
Indices: 146323--146401 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
146313 CCCATCCTTC
*
146323 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
146362 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
146401 A
1 A
146402 TAGAAAATAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 145823 -- 146322
TCTCTCAGCGATTCTTTTCTCCGCTAATCACCCCTTCCCAACCAGCCCGCCCGATCGATCTTGTA
AGATCGGCTAATTCAAAGGGGTTAATCTGGTCTTAAGTTGTCGGAACGAATCGTTTGCTTTATCG
AAAAAAGCTTTATTAGGGGGTCTTGGTTGACCCCCTATTTTCAACCATGACAGCTGGCGTCGACC
AGCTTTGCAATACGGACGGACACGAAGAAGAACGCAGGCAGCGGAAATGCAAAAGAGAAGAGCAA
AGATTCCCGACCCAGAGCATGTTATTGACTCAACCACAAATCTGTTAAATGAAGGTAGCTTGCTT
ACTCTCAGCCACTAGTTAGAAGAAAATCCCTTGACTTCGCTTATCCCTTATGCAGTAAAGAAAGC
AAGTGAGGCGGGCTAAGATTCCATTCGAAGTAACGTAACAGGATTCGATGTTGCACCATCTTCAA
CTCTTCTCGGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 146402 -- 146901
TAGAAAATAGAAAATGTACATAGCTGTTCCAGCCGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTCGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCATTTGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:175803 original size:21 final size:20
Alignment explanation
Indices: 175777--175815 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
175767 GCGAAGGGCA
175777 AGGGTCAATGTAATATGAGAG
1 AGGGTCAATGTAAT-TGAGAG
*
175798 AGGGTCGATGTAATTGAG
1 AGGGTCAATGTAATTGAG
175816 CTCTATCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.05, G:0.36, T:0.26
Consensus pattern (20 bp):
AGGGTCAATGTAATTGAGAG
Left flanking sequence: Indices 175277 -- 175776
CCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCGATCTTGT
ACCCCTAGTTTGATCGAGGGCGGTACACTGAACACCAACCCAATATCTATTCAAAAAAGAAAGAA
TAGCAACTACGAAAACGACAAGCAACTACATCAACTGAGGGGAGATAGAATCGGTAGTCTCGTTC
CTAGCGGTTCTAGCTCTTATTCCCTCTCATACGATTGAGAGACGCCAAGGGGATGTATCCTATCC
TCTATCCTAAGCGGGACGAGTACCCGCTCAAGCGAAGACTCAAGCTCGAGTGAAAGGTCAATAAG
GTAATCCGTAAAGAGAATGAGGCATTTCAAAGATGATGTTTCAAGTTAGGCCCCCGACCTGACCT
TATTTCTTTGGTGGTTCTCTGTCTCCCGGTGTTACTATAGGGTAGGGACTCCCTATCTCTTAATT
TCTTGATCGCTAGCCCCTGGAACGAACAACCATCAGCGAAGGGCA
Right flanking sequence: Indices 175816 -- 176315
CTCTATCTATATACGGATTTGCAACCACAAGACACCTTTCATATAGCCCTGTCAAGTACCCAAGT
TAGGCTTAGGCCATGCAAGCCAGCCTGTCCTTCGGAACGGAATAAGAGTCCTAAGTTCGGGCCAA
TGCTTTCTTTCTTTCTAGAGGCTTTGACTTGAAATAGTTGCCTTCCTCCTTCGTACGCCAGCTTA
TTCCGTCCGTCGAATCATCAGTAAGGCTTTCTGTCTTTCATCTAAAAGTCCTTTCAATCTCCATT
CTCCATACCGGCCGATAGTGGAATGAGCCTCTGGGTGATCCCTGCCATCAATTGATTGCTGTTTC
GGACCATCCAATCTTTCCCGTGCTGCTTGCAATCCCGTTTTCTTGAACAATGGAACTGCACTCCC
TTCAAATCGAGATTAGAAATCTCTCTCATTCTTCGATCCGTTCCGAACAACCCAATGAACGGGAA
AGCGACTTGACAAAGAGAATTCATTCCCGAACTGAACAGATCGAA
Found at i:179006 original size:15 final size:15
Alignment explanation
Indices: 178986--179023 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
178976 TCTTTCTTTT
178986 TTATA-TAATTAATAA
1 TTATATTAA-TAATAA
179001 TTATATTAATAATAA
1 TTATATTAATAATAA
*
179016 TTTTATTA
1 TTATATTA
179024 GAATCTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 18 0.86
16 3 0.14
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATATTAATAATAA
Left flanking sequence: Indices 178486 -- 178985
GTGCTGCCTCGACTTCAAACTCGATGTTTGTTAACTACGCGGGACACTCCCAAACTCTTTCTTAT
CAAACCCCTTTATCGTTCCCTTGTACAGCCCTTACCAGGCAGTTTTCATTATGTGTTCTTTGCAG
TGTCTAGGGAGGTTAGGACTGAATTAAGCCAATGCGTACAAATAGACAGACCAGGCTCATCCTTT
TTTTTATGTTGAGGTCGCAAGTCTGTCTATGATTAAGAGTCTAGGTGGTGTTGAAGCTGGCTCAT
TCATGCTAGTCATCTTAGAGCTATGAGTCAGAACAATGTTCACCAACTCTTCCATAGCAATCTTG
TTCATATATCGAAAACGCTTTAGAATATGAGTTTCTCTTGTTCTATTAAAGCCTCCCCAAGGTAG
CATTGCCGAGCGGGCGATCCCTGTCTTGTTTATCCAGCTAGCTTTTCTCCGTGGTACTCAAATTC
TATTTGTGAGAGCTCCTTCGGCTCGGCTACCTTTTTCTTTCTTTT
Right flanking sequence: Indices 179024 -- 179523
GAATCTAATATAATAGAATAATATATTAATTATATATTTTATTTGTATATTGTATATTTTATATA
AAAATAAAATAGCGAATCTAATGAATGATTCATGAATATGAATTCAAAAATTCTATGAAATATGA
AATGATGAAAAACGGAAAGATCCCCCGGATCGAATCATATCATTCCATTATATTGACAATTTCAA
AAAACTGTTCATACTATGAACATAGTATGATGGCTGTTGGGTAAGTATGCCCCCATCGTCTAGTG
GTTCAGGACATCTCTCTTTCAAGGAGGCAACGGGGATTCGACTTCCCCTGGGGGTAGGGTACTAC
GAAAGGAAGTTGATCATGGATTACCAATAAACCTCAAATGGATTCTTCCTGGGTCGATGCCCGAG
CGGTTAATGGGGACGGACTGTAAATTCGTTGGCAATATGTCTACGCTGGTTCAAATCCAGCTCGG
CCCAACAATTCGCCAATATACCACGAGATGGTATAACCCCCTTGT
Found at i:254686 original size:15 final size:15
Alignment explanation
Indices: 254663--254692 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
254653 TTAAAGAAGG
254663 TTTTACCTTTACCTT
1 TTTTACCTTTACCTT
*
254678 TTTTGCCTTTACCTT
1 TTTTACCTTTACCTT
254693 GACCCTTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.27, G:0.03, T:0.60
Consensus pattern (15 bp):
TTTTACCTTTACCTT
Left flanking sequence: Indices 254163 -- 254662
TATTCATTAGGTTATAACTATCAAGAAAGTAGGAATGGCAGAGAAAGAGATGCACTTTCTGGACA
CAGGATCCAGAGTTTTTCGAGAAAAGGTCCCATCCCTCAATATCATGATCGGGTCGACCTGGCCA
GATCATGAGTGAATAGAAAATAGAAAATTTCAATAGCTGTTGCTGTTCCAGCCATTTTTTTTACC
ACTTCTTCTAGGTATTATATATATGGTTTGTTCTTTTTTTAATAGGAATAGTGCTTTCGGAAATG
CGAGGTACCGGGGGGGCAAACAAGGTCGCAGACAAGAGGTGCTTGCAAGCACCAGTGGTGCTCCC
ACTAACGAAAAGCCCAAAGGAAAAAAAGGGGGGCAAACAGAACTGCAGGCCGAGGGGTATACCGC
AGTTGAAGACTCCGGTTAGCAGTCCTCGCTCGTCTTATTCTTCTACTTTGTCACCTTTACTTTTT
ACTTTTTTTCTTTCACTTCACCTTTCCTCTCGCTATTAAAGAAGG
Right flanking sequence: Indices 254693 -- 255192
GACCCTTATCCTCTTCTTTGGATTTCAATACCCCTTCCTTAACACTCTCATTATCATCCAATATC
TCCTTAACACTCTCATCTTGATCATCATCCAATACCCCCTTAACACTCTCATCCAATATCACAGA
ATCCTCTCCGAGCGGCTTCGCACCTTCACTATCCTCTTTCTATTTATCCAATATCGCTGCACCCA
TATCACCACTAAGAGCTTTCATTCGTACAGCATAATCCATTCGATCCAGCAAAGTAGCGAGCCTA
ACAACCGGTTTATCCTTAATACAGCTGAAGAGTAATCCTAGTACATAAATAATGATGGACTCCAG
CGTATAGGCTTTCAAGTTATGAATAAGAGGTAGTTCCTCATTTGGGAGATTGTTCTTGAGATATT
CTTTAGCAGTAGTCTTATCATTACTAATCAATAACTTTAGCAAGTTAGGAGAGGTTTTATGTAAA
TTCCTTTCATTGTAATCCATACTCATTTCTTCAATCATTAACTGA
Found at i:254764 original size:30 final size:32
Alignment explanation
Indices: 254728--254809 Score: 96
Period size: 36 Copynumber: 2.5 Consensus size: 32
254718 CAATACCCCT
*
254728 TCCTTAACACTCTCAT-T-ATCATCCAATATC
1 TCCTTAACACTCTCATATCATCATCCAATACC
254758 TCCTTAACACTCTCATCTTGATCATCATCCAATACC
1 TCCTTAACACTCTCA---T-ATCATCATCCAATACC
*
254794 CCCTTAACACTCTCAT
1 TCCTTAACACTCTCAT
254810 CCAATATCAC
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
30 15 0.34
33 2 0.05
35 1 0.02
36 26 0.59
ACGTcount: A:0.28, C:0.37, G:0.01, T:0.34
Consensus pattern (32 bp):
TCCTTAACACTCTCATATCATCATCCAATACC
Left flanking sequence: Indices 254228 -- 254727
CAGGATCCAGAGTTTTTCGAGAAAAGGTCCCATCCCTCAATATCATGATCGGGTCGACCTGGCCA
GATCATGAGTGAATAGAAAATAGAAAATTTCAATAGCTGTTGCTGTTCCAGCCATTTTTTTTACC
ACTTCTTCTAGGTATTATATATATGGTTTGTTCTTTTTTTAATAGGAATAGTGCTTTCGGAAATG
CGAGGTACCGGGGGGGCAAACAAGGTCGCAGACAAGAGGTGCTTGCAAGCACCAGTGGTGCTCCC
ACTAACGAAAAGCCCAAAGGAAAAAAAGGGGGGCAAACAGAACTGCAGGCCGAGGGGTATACCGC
AGTTGAAGACTCCGGTTAGCAGTCCTCGCTCGTCTTATTCTTCTACTTTGTCACCTTTACTTTTT
ACTTTTTTTCTTTCACTTCACCTTTCCTCTCGCTATTAAAGAAGGTTTTACCTTTACCTTTTTTG
CCTTTACCTTGACCCTTATCCTCTTCTTTGGATTTCAATACCCCT
Right flanking sequence: Indices 254810 -- 255309
CCAATATCACAGAATCCTCTCCGAGCGGCTTCGCACCTTCACTATCCTCTTTCTATTTATCCAAT
ATCGCTGCACCCATATCACCACTAAGAGCTTTCATTCGTACAGCATAATCCATTCGATCCAGCAA
AGTAGCGAGCCTAACAACCGGTTTATCCTTAATACAGCTGAAGAGTAATCCTAGTACATAAATAA
TGATGGACTCCAGCGTATAGGCTTTCAAGTTATGAATAAGAGGTAGTTCCTCATTTGGGAGATTG
TTCTTGAGATATTCTTTAGCAGTAGTCTTATCATTACTAATCAATAACTTTAGCAAGTTAGGAGA
GGTTTTATGTAAATTCCTTTCATTGTAATCCATACTCATTTCTTCAATCATTAACTGAAAAGAAA
TTCTCTGTTCTCTAGGATAACATGGGAATATATCCTTCTTATCATGTAATAACCTGATTATTTCA
TCCTGATACTGAACTGTATTAGATTTCTTATTATCAGGATCAGGC
Done.