123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: MZ900994
Parameters: 2 7 7 80 10 50 500
Length:  558032

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21851--21890	20	2.0	20	85	0	53	40	20	15	25	1.90
67972--68008	14	2.6	14	82	0	56	21	16	18	43	1.88
108904--108936	16	2.1	16	94	0	57	45	6	9	39	1.61
113151--113218	35	1.9	35	96	0	127	26	19	11	42	1.85
114915--114972	29	2.0	29	93	0	98	29	29	17	24	1.97
114952--115001	24	2.1	24	92	7	84	24	34	12	30	1.91
126244--126304	21	2.9	21	77	2	59	36	36	11	16	1.85
128708--128757	25	2.0	25	92	0	82	32	20	8	40	1.81
145541--145573	2	16.5	2	93	0	57	51	0	0	48	1.00
225697--225753	27	2.0	29	83	6	73	15	26	15	42	1.87
228030--228089	21	2.6	25	67	25	58	55	13	15	16	1.70
246510--246547	18	2.1	18	95	0	67	60	5	5	28	1.40
255623--255663	19	2.3	18	84	12	50	58	14	24	2	1.49
268089--268143	24	2.3	23	78	9	65	18	29	20	32	1.96
282555--282597	18	2.6	16	82	10	52	20	20	32	25	1.97
320194--320266	35	2.1	35	87	5	103	30	13	34	21	1.92
339738--339776	19	2.1	19	95	0	69	61	5	5	28	1.39
354968--355073	32	3.3	32	98	0	203	8	42	18	30	1.80
377745--377775	14	2.2	14	94	0	53	35	29	12	22	1.91
383211--383245	18	1.9	18	100	0	70	17	31	11	40	1.85
386908--386935	8	3.5	8	100	0	56	50	0	10	39	1.37
433841--433888	16	3.0	16	84	0	69	16	18	22	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433835--433928	32	2.9	32	80	0	89	18	17	25	39	1.91
433876--433928	16	3.3	16	91	0	79	16	18	24	39	1.91
433951--434020	35	2.0	35	100	0	140	45	22	20	11	1.82
436492--436529	19	2.0	19	100	0	76	36	15	31	15	1.90
463359--463389	2	15.5	2	93	0	53	48	0	0	51	1.00
492657--492689	13	2.5	13	81	18	50	39	0	0	60	0.97
499238--499279	21	2.0	21	100	0	84	42	23	0	33	1.55
505888--505929	15	2.8	15	81	0	57	19	26	40	14	1.89
512748--512790	18	2.4	18	81	18	54	34	25	20	18	1.96
520799--520894	38	2.6	35	75	9	95	17	27	16	38	1.91
529062--529195	31	4.3	31	100	0	268	20	23	29	26	1.99
544118--544178	31	2.0	31	93	0	104	37	24	9	27	1.87
552826--552890	21	3.0	21	79	20	73	32	24	21	21	1.98

Tables:   1

The End!