Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MF611849

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 111332
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:19098 original size:14 final size:14

Alignment explanation


    Indices: 19079--19109  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

      19069 ATAGCTGGTC

                          
      19079 AATCACTGTAAGGA
          1 AATCACTGTAAGGA

                          
      19093 AATCACTGTAAGGA
          1 AATCACTGTAAGGA

               
      19107 AAT
          1 AAT

      19110 ATCCGGGCAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23


Consensus pattern (14 bp):   
AATCACTGTAAGGA

Left flanking sequence: Indices 18579 -- 19078
GGTGTTAACGGAGCAATTAGGGGAAACAAGGATGTAGAAGTGACAGCTCACTCACCAATCCAAAT
CTCTGCTGGGCAAGAGGATACTGTGTCAGTTTTGCCAAAAGAGTATGTTAGTGTTGGGGCAAAGG
AACTTAATGACCCAGTGGGCCCTGTGACCAAGGAACGGGCTAAAGGGGATAGTTTGACAAAAGAG
ATGGTGAAGTTCTGCCCGAACTAAACCACAAGCCTCTGTTACGTGCACGAAGAGAACAAAAACAT
GGAGAAGAATACAGAAGAGGGAGGGGAAAGGCAAACCTGGTACTAGGGTTTTGGATAACGGTAAG
AGGAAAGAGACCAGGTATGATGTTCAGGTCATGGATTATGAGGAACGACGCCCAGAAAGGCGAAT
GAGGGAGTAGTCTAAGGACTTACCTTTACCTTCCTTCCTCCGGCCCTTGGTGACATCGCTAACGA
ACTGAGCCCTGACCTTCGAACCTCCCATTCCTAATATAGCTGGTC


Right flanking sequence: Indices 19110 -- 19609
ATCCGGGCAATCCACCGAAACAGAGAAAGATAGGGGCGAAGGGCATCGGAGCATATGGAAAAGGA
TCTGCTCTTGCCAGGCTTACGGGGGATAAATCCCATCTATCCTCTACTCCTAAATTCATACCAAC
CAGCCTACCAAACTGCTTGAAATCGGTCTAGAATCGGCAGTATGAAAAGCTGATTCAATTTCAAT
TTTATCCCACAGACATTCCAATCTCGGATGCTTCCTACGCTCCAACATCTTGAACAAGCGTCGTC
TTTTTCTTTTTCCCGCTTTCCGGAGGTTTGTGCACATGAATGAATAGTATAAGTAGTTGGAAGAT
GGCATAGAGCATAGAATGAGATTGATGCTTCTCATGCCCTGTTTTCAGGGGTTGTGATAGAAGGA
GCTGTGGCACTTTCGGAAGGGGGAATCGGACTAGGCTGTCACTGTTCTAGAAGAGGAAGCGTAGC
TGGCACGTTGAACCATGTCTGTCAACGGTGAAAGATAGCCCGGTC



Found at i:73585 original size:14 final size:14

Alignment explanation


    Indices: 73566--73592  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

      73556 GCGGATAAAT

                          
      73566 CAAAGAAAATGAAC
          1 CAAAGAAAATGAAC

                         
      73580 CAAAGAAAATGAA
          1 CAAAGAAAATGAA

      73593 ATTTTTAGAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.67, C:0.11, G:0.15, T:0.07


Consensus pattern (14 bp):   
CAAAGAAAATGAAC

Left flanking sequence: Indices 73066 -- 73565
TAGGCAGCGATAGAGGGGGGGAAGGTCGAGATGAAGAAAAAGAGGGGGAGTTTGCGGCGAACTGG
GAACGTTCATAGTGAAAATCGAGGGAACGGAGCTTACAAGATCGCCCAGATGGACGGACAAATAG
TGCCGAGAACCTGGAACAACCAGAGCTTATATAGGCCACAAGGGCGAGGAAAAAGCCCAAAGTAC
CCGAGTCAATAGACTAAGTATAATAGTCTTTTTCTTATGTAACCCTTCTGAAGGGAGAGCCAAGG
CCAATGTACCCTCAGAGCAGATGCGAAACAAAGAAGAAGAGGCTATGAAATAGAAGGGCGAGCTA
AGGAAGCAAAGCGTGCTTGCTTATCGGCTGTTGTCACAATTGAGCTACGATCAATGAAAATATCG
TATTATAGTCATAGAAACAATATACGTGTCCCATGTCTTTGTTGGAAAAAAGCCAACAACCCGTA
TTTAAATGAAAAGTCTTTCTCTTTTTTTGGGAGGAGCGGATAAAT


Right flanking sequence: Indices 73593 -- 74092
ATTTTTAGAATGGCTATTTCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGAT
TTCAAGACGCAGCAACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTTTTCTTC
CTCATTCTTATTTTGGTTTTCGTATTATGGATCTTGGTTCGCACTTTATGGCATTTCCACTATAA
AAAGAATCCAATTCCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTTGGACCATATTCC
CTAGTATCATCCTGATGTTCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTA
GTAGTAGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGAGTGCGCCCCTTCA
CGAGGGTGATTTAAGTGCAACGAAATGCCTTAAAGTTGAATATGGTTCGCGAAGCATCTGGCTTA
CCGGTAATCTCCCATTCCCGCCGTCGAGAGACTTTAATAACTATA


Done.