Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: ON674117
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 425973
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Found at i:23936 original size:15 final size:15
Alignment explanation
Indices: 23916--23947 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
23906 CCTCATAGTT
23916 AGTAGTAGTAGTGTA
1 AGTAGTAGTAGTGTA
23931 AGTAGTAGTAGTGTA
1 AGTAGTAGTAGTGTA
23946 AG
1 AG
23948 CGGCTGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (15 bp):
AGTAGTAGTAGTGTA
Left flanking sequence: Indices 23416 -- 23915
CCACTATCGTAGCAAATAGCCTACTGGTGTCGGGACCTACTGGCGGCATTAGGCTACTGACCTGG
ATAGGCGAACCGCCTACATGCGAAAAGAAGGAAGCAAACAAGGTGGATACGACTCTTCCAATCTA
GTTTCCGATAGTCATCCTTCTATCTTATTCTTGTACTGGACCTTCTTCATTATGATCCACTATTT
CTTCTATTCTTTTTGGTCATAATGGATTAGCAATCTGAGTGGCGATTCGCTCGCAAGCCTCTCTC
CTCCGGCGAAGTGGAAGACTCGAATTTAAAAAGAATATGACGGTCTAAGTCCAACAGTTCCAAAA
CGCCGATTAGGAGTGAGTAGGAAAAGCCAGGCAAGGCACAGCAAATCGAAAATAGGGCAGATGGA
CTTCTTTTTCCGAGACTTATGTGCTCGTATTCAAAAACCTGATTCCAACAGAACCGATGATAAGG
CTTTTCAAAGCCGATTTCCTAGCCTTCTATCGATTCCTCATAGTT
Right flanking sequence: Indices 23948 -- 24447
CGGCTGAATTGACTCACTTTAAGGCATAGTTCAGGTTCCTTTCTTAATAAGCGCAGATTGTCCGT
TCGGCCCACTCTGTTCACATTCATTCCCAACCGGTGTGCTCTCTCTTGATGTCGCAAACAGGGAC
AAAGACGCAATCAAGGCTTCATATTTTCATATAAAAGCATTGCGAACTGCTAATCCCTGATTGAC
GACTTGACCCAAATTTCTTATTTATTGAATATCTCGATGTCGGATCAACTTTCAAAGTCGTAGGA
CAACTTCGACTTGGACCCGTAGTTAGCGATACGTGTGTGACGATCGATCTGCTTTCACCTTCGAT
CCTGGATGAAAGAGGCGAGACCCACTTGAATCTTCTGTTTACTGAACTTCTCTCTGAAACACCCA
ACGTTCATGATCGGTGGGTGATGACTAACCCGTTCGTTCAACTGAAACTCCCTCCTGCCTGAAAC
CAAAGTCTGACTTGACCCTCCGTCTTTCTTTGCTCACAGCTCAAG
Found at i:32361 original size:19 final size:19
Alignment explanation
Indices: 32337--32374 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32327 TCTCGTCAAC
32337 GAAACTCTCAAAGTATGAG
1 GAAACTCTCAAAGTATGAG
32356 GAAACTCTCAAAGTATGAG
1 GAAACTCTCAAAGTATGAG
32375 AGTTCCTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21
Consensus pattern (19 bp):
GAAACTCTCAAAGTATGAG
Left flanking sequence: Indices 31837 -- 32336
AAGCAAGGTGATAATACGGTAAGGAGTAGTTCACTTTCCCCGCTCCAAACATACCAATTTCTTGA
TTTATTGATAAGGCTTCATGAAAGGGGATTCCAGAACAGGTGGTCTGTGATAAGATAAGATAAGA
TAATAAGGGCATTGCTCCTGCGCCTGCCGTGGCTACTAAATCTGCAGCTGCGTCCGCTACTAAGG
GCTCTGGGTTTCCAACTGAAATGGGATCTGTATATGGAACGTCTACAGAGACTGGAAGGGATGCC
GTGTGCTATGGAACAGGATCCGCGCCTGTCCAGGTCGAGATCCAAAGCCATCACCTATAGGGGCC
CATTCCTTTTCCATATCCAGTTGGAGTTCAAGCAGCGGATTCAGTGGCAAGGTCTCTAGGCGCAG
ATCTTGCTTGTGTCCATGTCCAGTAGCCCGGCTCCGCTCCTGCGGCTAAGGAAGTTCTCTTCACT
TCGTGCCTTTCGTAAATCTCGTATAATAAGAAAAGTCTCGTCAAC
Right flanking sequence: Indices 32375 -- 32874
AGTTCCTGGAGTGATAGGATTCAGAGATTCGCAAGCAGGGAACAAGAGACCGAGGAGCCAGAGTG
CCCACCATTATTGCCTTGCGGGGCAGGTGGGTCGGTAATCCCAGGGTGAGATCCCAGTAAGCGAG
TCCATGAATCGAGGAACTCCGATTTAGGGCGGATAACATGATTTAGTAATAATAATTGAGTCTAG
AGCAAAGATTTTCCAAGCCTTCATTCCCGGGGAAGATGATTGACTTCGTCTCCTCTGTCCTCCCT
ATGTCCCGGGAAACCTACCCTATGCCTCAAATCCCGGGGGGGACAAGATTCTCATCACAACCGAA
GCACCCCCCCCCGGACATATTCAAGCGAAGCCTTCTCGTATGGGATTCATAGAATTGGATCTCTT
CCTCTTTATGGACGTGCCGACTCCGCCTCAATTCCCTTCTTCAGGAACGGACGTCATGTCCAGGA
ACGGACTTACGCCCAAATTACGAGTAATGTCCAGGAAGATGAAAG
Found at i:106479 original size:27 final size:27
Alignment explanation
Indices: 106449--106529 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
106439 CTCAACTCGC
106449 AATTCAATAGTTATTGCTAAACTAACG
1 AATTCAATAGTTATTGCTAAACTAACG
* ** *
106476 AATTC--T--TGAGCGCCTCAACT--CG
1 AATTCAATAGTTATTG-CTAAACTAACG
106498 CAATTCAATAGTTATTGCTAAACTAACG
1 -AATTCAATAGTTATTGCTAAACTAACG
106526 AATT
1 AATT
106530 GGCGACTTGC
Statistics
Matches: 38, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
22 2 0.05
23 8 0.21
24 6 0.16
25 2 0.05
26 6 0.16
27 12 0.32
28 2 0.05
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (27 bp):
AATTCAATAGTTATTGCTAAACTAACG
Left flanking sequence: Indices 105949 -- 106448
TTTATAAGGGCGACAGGAGTCAACCCTGTAGTATTGGTTTAGCGATTATGTCAAGTCTCCCCAGC
TGCTCACTTGGCTTCGGATGATCAGACCTGTCTTGGACGTGGAACCCCAGAATTGAGGACTTGTG
GAGACGCGGAATATCAATCAGACTTAGGCTCAAACGGAAGCCCCGGGAGCACAGGAAAATAAGGA
ACTGTATATATAACCACTGGGATCCGGCACTGCCACTGGGTCTATTGCCCACCCCTCTCTCTTTG
GCGGTTACAGTATTCTATTCTTTCTCTGATCCAGCAAGAGCAATTCGTTAGTCTTAGCTTCAAAA
AGAAAAGAGCGGCGTTCGCTTTTGACGTTTATTAACGAATTGCTCTTTAATGGATTGCGGCACTA
ATGGATTTAGGGCCTCAACTCGCAATTCAATAGTTATTGCTCTTGCTCTTTCATTTCATAGTGCC
GGAATTGCCTTGCTTAAAGTATAAAACTGGCGCGCCTCAACTCGC
Right flanking sequence: Indices 106530 -- 107029
GGCGACTTGCTTGTTGGGTTGCTTGCATGGGTTCTTGAACTGGACAACCTCACTCTCGCTCGATG
CTTTGAATAGCGTGCGTAGCTTCGTACCCGAACAATAATCGGATCCGGGCCTTGCTATTGTTCGG
CCTGAAACAACTGTATGTAGTAGAGAGAGAGAGGGGCTTTTTGCGAAAGGCTATCAACGTATACG
TATATAGATATAGTGAGTGTGCGTGCAGGGTGTAGGTGTACCACTTACGAGAAAGAACCCCAAGT
CAGTCAAGTAGTTAACCAAACACAAGTAAGTAGTTCGTCAGTCCTTCCTCCGACGCCTCCCGTGC
ATTCTTCTGCATTTCATCATGTTTGTTGTGTTGTTCCGTTCATAGGTCCCAAGTCTGTCTCCTCC
CTCTCCTTAAGTTAAGAAAAAAAAAAAAAGAATGCTGCTGGATTGAACGAACATTGTAAGAACCA
CCAACCACAGGCCACCCACGTCTATTTTGTCTTTTGAACAAAGAG
Found at i:106489 original size:50 final size:50
Alignment explanation
Indices: 106435--106529 Score: 190
Period size: 50 Copynumber: 1.9 Consensus size: 50
106425 TAAAACTGGC
106435 GCGCCTCAACTCGCAATTCAATAGTTATTGCTAAACTAACGAATTCTTGA
1 GCGCCTCAACTCGCAATTCAATAGTTATTGCTAAACTAACGAATTCTTGA
106485 GCGCCTCAACTCGCAATTCAATAGTTATTGCTAAACTAACGAATT
1 GCGCCTCAACTCGCAATTCAATAGTTATTGCTAAACTAACGAATT
106530 GGCGACTTGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (50 bp):
GCGCCTCAACTCGCAATTCAATAGTTATTGCTAAACTAACGAATTCTTGA
Left flanking sequence: Indices 105935 -- 106434
ACGGACTTCCACTATTTATAAGGGCGACAGGAGTCAACCCTGTAGTATTGGTTTAGCGATTATGT
CAAGTCTCCCCAGCTGCTCACTTGGCTTCGGATGATCAGACCTGTCTTGGACGTGGAACCCCAGA
ATTGAGGACTTGTGGAGACGCGGAATATCAATCAGACTTAGGCTCAAACGGAAGCCCCGGGAGCA
CAGGAAAATAAGGAACTGTATATATAACCACTGGGATCCGGCACTGCCACTGGGTCTATTGCCCA
CCCCTCTCTCTTTGGCGGTTACAGTATTCTATTCTTTCTCTGATCCAGCAAGAGCAATTCGTTAG
TCTTAGCTTCAAAAAGAAAAGAGCGGCGTTCGCTTTTGACGTTTATTAACGAATTGCTCTTTAAT
GGATTGCGGCACTAATGGATTTAGGGCCTCAACTCGCAATTCAATAGTTATTGCTCTTGCTCTTT
CATTTCATAGTGCCGGAATTGCCTTGCTTAAAGTATAAAACTGGC
Right flanking sequence: Indices 106530 -- 107029
GGCGACTTGCTTGTTGGGTTGCTTGCATGGGTTCTTGAACTGGACAACCTCACTCTCGCTCGATG
CTTTGAATAGCGTGCGTAGCTTCGTACCCGAACAATAATCGGATCCGGGCCTTGCTATTGTTCGG
CCTGAAACAACTGTATGTAGTAGAGAGAGAGAGGGGCTTTTTGCGAAAGGCTATCAACGTATACG
TATATAGATATAGTGAGTGTGCGTGCAGGGTGTAGGTGTACCACTTACGAGAAAGAACCCCAAGT
CAGTCAAGTAGTTAACCAAACACAAGTAAGTAGTTCGTCAGTCCTTCCTCCGACGCCTCCCGTGC
ATTCTTCTGCATTTCATCATGTTTGTTGTGTTGTTCCGTTCATAGGTCCCAAGTCTGTCTCCTCC
CTCTCCTTAAGTTAAGAAAAAAAAAAAAAGAATGCTGCTGGATTGAACGAACATTGTAAGAACCA
CCAACCACAGGCCACCCACGTCTATTTTGTCTTTTGAACAAAGAG
Found at i:110704 original size:16 final size:16
Alignment explanation
Indices: 110683--110719 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
110673 TATATATATC
110683 TAAATAAAATAAAGAA
1 TAAATAAAATAAAGAA
*
110699 TAAATAGAATAAAGAA
1 TAAATAAAATAAAGAA
110715 TAAAT
1 TAAAT
110720 CAATAGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.22
Consensus pattern (16 bp):
TAAATAAAATAAAGAA
Left flanking sequence: Indices 110183 -- 110682
TTCGTCGAGCCTTTCCTTTAGTGGTTGGGGGAAGCATTCCCTTATCTGAACTTGGCGGGCATTCT
TTCGCTATGGGGTGGGTTTGAACATAGGCTCAAACATTGAAGGGTCCTAGCTACGCCATGCGTTC
AATACCAAAAAAGAAGCCTCTGGAAAGCTGCAGGGATGAAGAAAATAGGGCGCTTTCCTGTCTTG
CACTGAAAAAAGGACCTAAGATAAGAGCGTCTTCTCTTAGGTTTATTCCTCCCGCGCCCGCCGCC
GCCCGGCCCGCGTTAGAGGGGGAAGATTAGCAAAGCGGGAAAAGACAGATGGAGGGGGAGCAGCA
TCTTATTCTCTTCGCTAGAACTTCCGGATCGGATAAGCATTCGGAACGGGCTCCGCGTTCATTTC
GTTGGCAGAAACGATCCAATCCATTCGGGGAACCCAAAAAGTGTTTTTTTTGACTTCATTCATAG
ATAGAATCAATGGATAGATAGACATAGATGAACGATATATATATC
Right flanking sequence: Indices 110720 -- 111219
CAATAGATATTCTCTCTAAAATAAAGGAATAGAATAGACATCCCTTTAGATGTCTATGTATCCTT
TCTCTCTCCATTATTTTTATATTTCTCTCTCAAAAAAATGGAGAGAGAAAGAGCAGATGAATCCT
ATCCCCTATATCGAACACTCATTCCTATCTATTGATAGAAAGATCTTCGTCAAATACAATACCGC
TTTGTCTTTTTTTTTTTCTTCCTCATATCCAAGGCAGCTTACCACAAGCACCCCACCCCATACGA
CTATAAGGGGGGCTGTTCGCCTTTTGAATCAAACAAAGTCGTAGGGGCTTCATAGCAACTTTCAT
TCTAAAGGAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCTTCAGTCGCAAACCC
AAGAAGCAAGGCCCCGCAATCCATTAGTGAATTAGTTGCCAATTCGTTAGTAAGCGCACGAAAGC
TCAATGATCGATAAAGGCGAACGAACAAGCAACTTCGCGCTAGGC
Found at i:154641 original size:19 final size:18
Alignment explanation
Indices: 154619--154655 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
154609 TTAGGGCAAG
154619 GAGTAAGCTTTCAATCTAT
1 GAGT-AGCTTTCAATCTAT
*
154638 GAGTAGGTTTCAATCTAT
1 GAGTAGCTTTCAATCTAT
154656 CCCAAGCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.38
Consensus pattern (18 bp):
GAGTAGCTTTCAATCTAT
Left flanking sequence: Indices 154119 -- 154618
AATCTAGCCAACTTCTCTGATATATAGGTGATCCTGGCCTCTACTCGAAGGTTAGCCCCCTCCGC
TAGCCTTGAGGGAAGCGAAAGAAGTCAGGCAAGTGAAAGTTCAGTTGACTATAGCTTTTTGGCAA
GCGGGAGGTACAAGTGTCGCAGATCAAATTGTCGGCAAGCAAGCTCATAATAAACCTACTTTCCG
GCGAGTGGTAGCGGTTGAGAGCGAAGCGAAACTTTTTTTCAAAAATCTCGTCTTTCCTTTAGGAA
ATATTGTCAATTCTACTTTCTTTTCTCTCCCCTTCATTTTTCATTCTTTCTTTCCGTAAAAGCAG
TTACGGGTTCAGGGCAGTCGGAACTCAAACAGTAAGAGTAGGCGGTGCGGTTACAAGTCCTGGGG
ATAAATGAAGTGAGTCTTTCTTTTTAGTCAGCCTTTCAAGAGAAGACCCTCTAGTTGCTAAATCT
TAAAGTTTTCAAGTCAGATTCAAAACTGGCTTACTTTAGGGCAAG
Right flanking sequence: Indices 154656 -- 155155
CCCAAGCACAGAAGAAAAGGAGGAAGGGAAGGTGCCAAGCCTGATTTGATTGCAGCACTAGTAAG
GGAAGGAACTAGCTCTCAAGGGGTGAGTGACCTACATTGAGTGTCATATCAATTAATAGAATACT
AAGCCGCTGCTTGAGAACTTGAGAAGAAGCTATGGGACTTTAAGGGATAGAATAGGCGAAGGAAT
CTGCTGCTATTGCCGTTGAAAGAATAAGCGATGTGATCTTTTCAAGTTCATCCTAGCTATCATTC
TTCATTCAATCATCGCCAACTTTTTCCTACCGAGTAGTTCTCTCATCCAGGAGAGTAGTCTTAGA
GCTTAGTAGTTTTAGGCTCCTCCCTCTCCTTTTTAGATGGTATCTTCTCTGTCCTTCCCCTTTCC
CTTTTCTCTAATAAGCTCGAGAACCCTTGAAGGGCACTGGAAGCATCTCAAGGAAAAGAGAGAAG
TCAAATATCGTAGGTTTTAGATAAGATTCCCTAGTAGATAGCTAA
Found at i:164050 original size:18 final size:18
Alignment explanation
Indices: 164010--164052 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
164000 AGAGCCCTGC
164010 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
164029 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
164046 CATAGTC
1 CATAGTC
164053 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 163510 -- 164009
ACGGAACCTAACAAAGAAGCATAGGTGTAGTTCCGTCAGGCTTCCCCTCGCTCTCCTTTCCCTAA
TATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCTACTGGCG
CTTCAAAAGGCGAAACTCTCAATTCTCGATAAAGGGCTTGTTATTTGAAAAGGCGGACACTTTGA
GTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCT
CCGGCTCCGCGCACCTGCCCTTTCGAAGCACTTTCTAGTGTGAACCACCAAGGAACGTCCCGCGT
TCCGGCTTGTTCGAATCGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAC
TATTCCCCCGTTCAAATTCCGTACCGTCACGTTCCGCCCTATCACGTAAGGGGGCCTTTAGTATT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCTTAGAGCCCTGC
Right flanking sequence: Indices 164053 -- 164552
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:174556 original size:24 final size:24
Alignment explanation
Indices: 174526--174573 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
174516 CTTACGTACG
174526 AGAGTTCAATCTAGAGCT-AGAGTC
1 AGAGTTCAATCTAGAG-TGAGAGTC
174550 AGAGTTCAATCTAGAGTGAGAGTC
1 AGAGTTCAATCTAGAGTGAGAGTC
174574 TTTACCGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (24 bp):
AGAGTTCAATCTAGAGTGAGAGTC
Left flanking sequence: Indices 174026 -- 174525
TGAGAAAGGGTATGATATTCTTTCTTCAAGAAAGGAGATAGTCTTAACAGAATGAGAAAGGAGAT
AGGATAGTTCCCTAGTTGGATGGAATGAGAAAGCTAAGGAAGTTCCCGATCTGACTGAAAAAGAG
AAGAAAGCTAAGGCACAGTTCCCTTTCCTCTGAGAGGTTTAAGGAAATTCCCAGCTAAGGCAGTT
ACCTAGTTGAAACGAGAGGTATTTGATGACTCTCTTTCCTCTCTAAGAAAAGAGAGAGACAAAAC
AAACGAGAAATCTCGCCTTTATAAAGCAAGCCTTAAGTATTAAATAAGTGAATACGCCAGCGGGA
ACTTTAAATCTTTCGCTTTCTTGGCGAGTGTTCGTCTATCAATGAATGGAATCGGTAAAGTGGTC
TCGGCGGTTCGACTGCTTTGTTCTCCACGCCTTCGTTCATTTGCCAACTTTCTGACTGCAAAAGC
CAGTCCGAGGTTGGAGTTAGAGTTCCTATCAGGGCCTTACGTACG
Right flanking sequence: Indices 174574 -- 175073
TTTACCGCAACTGAGTCACTCAGTTATTTTCTGAGTCACTTAGGCAACTGAACTTGTGATTCCGG
GTAACCGCATCGGATTCAGGGAGAAGGGTTCATCCGCTTTCCGTTGATAGCTACAAAGGCGTGGC
TACTTCAACTTCCCACAGGTGAGTGGCTTACACATTAGATGCCCCCCATCTACTCCTTTTTCAGA
ATGGAGAAAGAATAGAATTGTGGATTTGGGAACTCAAAAGGAATCCTTTTCGTCATAGTAAGGTC
TCGCTTGGACTGTCCTACCCGGTATTGGCCGGGACTCTAAATACGAGAGCAAGAGTGGGAGGCTC
CTGAATAGCTTGCGAGTGATGGTCTTTCTTTCAAAGTGAAATTCTTTACACTTTTTCAATCTTTT
AGGTACGCTATTTATATATATTAACAGTTGCCGATCGATTTAAAATAGTAGGGCTCATAAAGAGG
ACTTAAGTTAAACACTATCACAACAAAGAATAGAGCCATTTAAGA
Found at i:181578 original size:32 final size:32
Alignment explanation
Indices: 181514--181578 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
181504 CTGGAGTCTC
*
181514 GTATCTGATTGACTCTCTCAAGATCCGTTTTT
1 GTATCTGATTGACTCTCTCAAGATCCGCTTTT
*
181546 GTATCTGATTGGA-TCTCTCAAGATCTGCTTTT
1 GTATCTGATT-GACTCTCTCAAGATCCGCTTTT
181578 G
1 G
181579 GTGCTGCTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 28 0.93
33 2 0.07
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.43
Consensus pattern (32 bp):
GTATCTGATTGACTCTCTCAAGATCCGCTTTT
Left flanking sequence: Indices 181014 -- 181513
ACGGCGGCTATCCCGAGCTAGCCATCCATAGTTGTCAGCCTCCCTTACCCACAACCCTCACCTGT
GACCCTCACTGAAATTCAATTCAATGAAAGGCGGACCCCATAGAAGTAAGCCTGAGCCAGCTCAG
TGAAGACTTCTCAAATACCATCCAGCCAGACCCTTGAATAGCATGTATAAGATTTAAGATTAGTC
CTGGCTACCGTGAGCATGAATTGTATTTGAAGCAGGAAAAATGAAGCTTCGCTTAGACAGAGATT
CCGTTTTTGGGACATCGTATTGGGCACGGACAGGTTGCCAGAAAGAAAAGTCAAGGCTATTCTTG
AGCGGCCTACGCCCACTAAGGTCACTGAATTGAGATCTTTTTCTTTTGAGAAACCGGGGTTGTAT
GACTAGCTTATCCGGCATATGATCTTAGTCGATAAGATAGTGAGAAAGTTGCTAAAAGTGACTTT
CTGTGAGAACTCTCTTCTTGATGATCTGTCTTTTACTGGAGTCTC
Right flanking sequence: Indices 181579 -- 182078
GTGCTGCTAGCTCCGCCCGTTGAACCGGCCGGATCTACTGAATCAACAGAGTCGACTAGATCGAG
ATCAACATTATGTTCCCTCTAACGATCACAAAATTCGTAAAGAAATAGAGTGAAAGAGAAAAGGG
AAGGCATATTTTATATGAAAGTAGGGGCTTGATAGTTCTATTTCTAGGAAGCTTCAGCTCGCTCT
TCTCATGCGCAAGTCTCAGTAGGGCTGATCTTCTTTTGAATAAGTTGTATAGTCTGATATGATCT
TTCCCATCGCTGAATGCTTACTTATTAACTAGATTCCTGCTGCTCTCATTGTCAAGCAAAGACAT
GCGGATAAGCTTCAAGCGAAGAACAGAGCGTCAGCCCTGCCTTAAGAGTCAGAGAGCGGGTAAGA
TTCCACTACCCCCTGATTTGCCGACAGACAATGCCAACCCTTATCGTTCGATGATAAAGTACCTT
CCTTTCATACTAGCTAATAAGAGAGTTACCAATTCTGAGACTGGT
Found at i:193669 original size:18 final size:18
Alignment explanation
Indices: 193646--193698 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
193636 GATTCGTTGA
*
193646 TTCTGATGATGGTCTTGG
1 TTCTGATGATGGACTTGG
*
193664 TTCTGATGATGGAGTTGG
1 TTCTGATGATGGACTTGG
193682 TTCTGATGATGGA-TTGG
1 TTCTGATGATGGACTTGG
193699 AGTTCGTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
17 4 0.12
18 29 0.88
ACGTcount: A:0.15, C:0.08, G:0.36, T:0.42
Consensus pattern (18 bp):
TTCTGATGATGGACTTGG
Left flanking sequence: Indices 193146 -- 193645
GCGTGCTGTTGGCTAACTTCCTATCTTCCTTCCCTGTCTATAACCGCTTACCTCAATCGAACTAC
TCGATTCCTTAGGAGCTACTACTGAGTGAGCATGGGATGAGATCGTTCTTTACTCACATTCATCG
GTTCAATAGCCACCACTACTCACAGTTGGGGTCTCGGATTGAGCCATTGATGGGAGCAATGGATA
AAGGAATAGGGATCTTGCAGAAATAGAGGGATGTTACTAATAGGGAGATCAGACGAGAGAGATAG
ATATTCGTTTTCGTCAGGTGATTAGCTACCATTAGGAATGGGATCAGCTGGGGATAGCTTTGATC
GAGGAGTTGGGATTTGCTTCGCCCCAAAAGGAGAACTCTTTCCCAAAGAAAGCAAGGAAATGAAA
TTGAAGAGAGAGACTAGCTCGACGAAAGACTGACGGAATGGAACTAAGAAATCGAGGACTTGGGC
TTTTCTTCGGGAATTAATCGAAACCATTATGTACCGATTCGTTGA
Right flanking sequence: Indices 193699 -- 194198
AGTTCGTTCCGTTCTATGCTGACTCCGTTCGTACCTCTCTTGGAGCATGAAAACGGCTGCGCTAA
CGCGCAACGGCTTTTCGAGCTAGGCGCTCATCCCTTGCTTGTTCCTCCCTCACTTGCTTGAAAGA
GAAAAGCCGATCTCCTTCACCTACTCCACACATGATCGGATGAGCCTTGACACCGATAGCCGATG
AGCCTTAGGACATAGATGAGACTGAATGAAGCCCTGAGCTTAGATGATAACTCCGGCATAGATAA
GTAGACAGACCACTGAGATAGATTCTTCTATCTAGCAGCTATGAGGACATGAAAGGGTCCAAAGG
ACAGCTAGCATAGTAGCAGCGAAGGTAGAGCAAGCTGTGAGTAGCAGTAGCGCCGCGTCACGAAG
ACCTGTAAGGAGAAGAATTGGTTGACCCATCATAAGCATCACCCGATCTGAAGAATGAAGGTTCA
AACCACTTCTATTATAGAATAGAGGCCAAGAGTCAAGGACTGAAA
Found at i:205969 original size:12 final size:12
Alignment explanation
Indices: 205952--205981 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
205942 GGATTTGTAG
205952 CGTCGTTTCAGT
1 CGTCGTTTCAGT
205964 CGTCGTTTCAGT
1 CGTCGTTTCAGT
205976 CGTCGT
1 CGTCGT
205982 GGTCGACGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.27, G:0.27, T:0.40
Consensus pattern (12 bp):
CGTCGTTTCAGT
Left flanking sequence: Indices 205452 -- 205951
AATGCATTTTGTTCTTTGTATTCAATAAGTATTGCATGACCGAATAATTCAAGGAGGGACGCACT
GCAGGGAGGGTCCTTTTTAGTAGATGACTCGTTGGGCCGTCGGAGCGGGACTTCCTTGGGAAAAA
GAACTTGAATAACTTAGTTTTTCTGGAGGAGTCGTAATTTTCTATCAGGAACGCTATGTCATTTA
CAACCCCGGCGTATTTCGGATGCTTGAAAGCCCCGCTGACCTGAAGTGATTTAGCAAGATTTTTC
TTTCTCGATGGTGATCGGTCATGGTATCCATAGCGTTGCTTCTTTTTCGGCCAAATCCGGATTTC
GTTTTGCTTCCCCCGGTCGTCGAGCCTGATCGACTCGACTCTTTTCCCTGCCCTCCGGCCTCTCA
CTTCGTTTCGTTCTTCTTCTGTACCGTCGCCTGAATGAAGACACCCGATCGGCCCGACTTTCTCA
AATGCCCACCACCGGCCCTTCTTCTTTCCGGGTCTGGATTTGTAG
Right flanking sequence: Indices 205982 -- 206481
GGTCGACGGGGAAGAAAGAAATGAATGAATGTTCTTTTGGGAAAATGTATAATAATACACCTACC
GAGACGAAAGCCAAAGGTTCGTCTCGTAGGTGGACGTATCGAACCGAAAAAAGATCTCAGATTGA
CATCTTGATACACTGATTTACCATAATAATAAATAGAGTCAATGGTGACTCCGCCGTGGGAAGAG
CCGCTTCTTTCTTGCTTGATAGGGGGGCTTCCATTCACCAGCGCAGACTACAAGTGCTCTCCGAA
CCGTGCTGGATAGTCACCCATCACACGGCTCTCAAACCCAACCTGTGGTGGATCCCGGGGGACAA
AGTCAAAGCGCTTGATCCTTTGCCCCATACTTTGAGATGCTCCTCCCCGCCGATCAAGCAGCGAC
GCTGCTCATGATAGGCGTTAGCGGCTTGCCGCGTTCGGTTCGGATAAGTCAAGTCCCCTCGGTCG
GTTCGCTCAGGTGGTCTTCCCTTATCTTCCCTAACGTTCAGAGTT
Found at i:212181 original size:21 final size:21
Alignment explanation
Indices: 212151--212190 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
212141 GTAGCTTTCG
212151 AGACTAAGAG-TGAGTGAAGCT
1 AGACTAAGAGCT-AGTGAAGCT
*
212172 AGACTGAGAGCTAGTGAAG
1 AGACTAAGAGCTAGTGAAG
212191 GCGTGACGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.38, C:0.10, G:0.35, T:0.17
Consensus pattern (21 bp):
AGACTAAGAGCTAGTGAAGCT
Left flanking sequence: Indices 211651 -- 212150
TAAGATCCATAATCATTCTTAATGCTCTGTCTTTCATACCCAAAGAGTGTTTCCTAGTCAAGCCC
TTGATTTGCCTGTTCCTAAATTTAGGAGCTCTCTCACGTCTTCGTGATACTAACCCAAGACTCTT
TCGCGAAGAGAATAAATAAACGAAAGAAAGCATAAACCTGTTCAATAGCTCTTTCCAATATAAAG
CGTAACGGCTAGAGAAGGAAGGAGTTCAGTCGTGAAGCTAAGGAGCTCTAGCTTTCTACACTGTG
AGCTAGGCCAGCCGTGAAGCGCAACGAGCTGAGCTGATTGCTTCGATATGAGGATAGCGTAACCA
AGGACTTCTGGCTTCGAGGTGAGTCTAGTCATTAAGCTAAGGAAGGACTTCAGTCGTGAAGCGTA
ACGAGCCAGTCTAGTTTGGCTGGCTTGAAGCGGAACCAGCTTTCCCCGGAGAGCGAGTGAAAGGA
AGGCGCCTTCGTCTTGGGTGGAAGCGGAAGGAGCAGTAGCTTTCG
Right flanking sequence: Indices 212191 -- 212690
GCGTGACGGTGGCGTGAAGCCTTACGAGATCTAGTGAAGTAAAGCGTGCTATCCGTTGGCTTTCT
AGCAGTGCGTGAAATCGCTCTTTGAAGGCCGTTCCGCATGGTATCGCGCGAAGCGCGGGCGAGGA
ATCCTCCGTATATTTGTCGGATATGTCGGACCCTTGCTCTCAGAAGAATGACAGGACTAGAGTCA
AGAACGTGAGTGAAGTGCATAGAATTAAGTGCGGTGACGTGAAGAAAGGGAAGCTCCCTATCGGC
CAATGATAATCAAAGGCACTCAGCTAGAGTGGCAAGCCAACCAACAACCATAAGAGCTTGAAGCA
CGTTCCGAATCTAAAGAAGCTAGCAGCATAGATAGCTAGACCAAAAGCAGACGCAGCACCCGAAT
CAATCCGAAGAGGGAAAATCATCCTATGAAAGATACGCTTACTCAAAAGCATTTGAAGCAGCTGA
ATCTAAAACAACAGAGACTGAAGCACCCAAATCCGATGATCCGGA
Found at i:223529 original size:16 final size:16
Alignment explanation
Indices: 223505--223538 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
223495 CAGACGAAGA
*
223505 CGCTTGCACCATCGTC
1 CGCTAGCACCATCGTC
*
223521 CGCTAGCACGATCGTC
1 CGCTAGCACCATCGTC
223537 CG
1 CG
223539 TTCGGTGCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.41, G:0.24, T:0.21
Consensus pattern (16 bp):
CGCTAGCACCATCGTC
Left flanking sequence: Indices 223005 -- 223504
TAAATATATGTGAGTCGTCTATCTTCACAACTGGAAATGCGCTCCGAAGGGAATAGCTTTCTCCA
TTGAATCAGTCTAATGTGGAAATGGAAGTGAAATTCATTCATAAATCTTGTGTTCTTCTGTGTAG
CGTACGGTGTCTCGTGCCAAGTGAAAGGAAAGCTGAGCTTGCTCAAAACCATGAGATCCAAGAGA
GTGCCCGGTCATCATCATTCCACTCTGGTCTACTTCGGTTACAACTTGATCTACGGTGCGATCAG
ACCAAGTGAGAGATTGGTTCGAACAATCGGCGCTCCATATGGCTTTCGTTCGCGAACTTAACCTG
GTCCCCGCTGGTCCAGTAGAACCGCTATCTCACTCTGGAAGCCCTTTCTTAAGCCATTAGGCAAC
CTAACGCATTGCGGCGCCGCGCTGACGCGCTGCGGCTACTTAAGCAACCTAACGCGCTACGGCTT
TCGTCCGGAAAAATGGGGCTTTATCGAGTGACGAGCAGACGAAGA
Right flanking sequence: Indices 223539 -- 224038
TTCGGTGCCTTTATCCCGCTCTTTCTGTCTGTATGTGTGAGTCTTGTTTTTTTCTTTTCTCTCGG
TCAAGTGAGCGTAGGTCCCTATCCTTCAAGTACTCAAGTCTTATCTCTGGAAGGTAGGGTAGCGC
CCGCTGCTCCGTTAATCCCTTTCGTTTTCTTGCTATTTCCCTTGCCCTGCTGCTGGATTAGACTA
TCAATAGTGCAGGATGCACTGGAACCAATCAAAAGGAAGAAACTCCTTCTTACCTTTCTTGCTTT
GTCACGAGAGCCATTATAGAACCTTACTTGCAGAATAGTGAATTAAGGAAAATGCACCACTATAA
GGTAAGGAAAATATACAAGTCATTTGTCACGAGAGCCATTAAGTGGGTGGTCATCCAGGAACTCG
CTCGGCTACCTAAGAAGCAAGGAATCGAGTTAGCGGGGTGAACATATCTCTTCTATCGTGGGGTC
GGGGGCTCGTATGGCATATAAAAGGACGGTGACGAGTTCTATCAC
Found at i:230710 original size:23 final size:23
Alignment explanation
Indices: 230680--230724 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
230670 TGCTAGCGAG
* *
230680 CACGAATCCTTTGTTTGTTTAGT
1 CACGAATCCCTTCTTTGTTTAGT
230703 CACGAATCCCTTCTTTGTTTAG
1 CACGAATCCCTTCTTTGTTTAG
230725 CTCGCAATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (23 bp):
CACGAATCCCTTCTTTGTTTAGT
Left flanking sequence: Indices 230180 -- 230679
CATCACACTCAGCCCTTACTTGGTCGGCTAAACATTCATTTTTGAAATCCATATACTTTTCCGGG
GGGTTCGGGTGCGCTTCTTCTTCCTGCTGGTTCAGGAGCTTAGGCCCAAGCGGTAGTCGTTTCCT
AGTTGGAGTTGGCACAGGTAGGCCCGGCACCTCCGGTTGGTTGGCGCATTCGGTAAAGCATTCCG
CTAGCTGGCGCATAGCAAGCAAGAAAGCTAAAAGCCAGCAGTAAGGTCCGGAGCAGGAGCATTAG
GGTAGGCGATGGCCGCTGCATAGGTGATAGTGGCTTCGGGCAGGCTGCGCTAGGAGCAAGAAAAT
GGGGATTCGTGAGTGGCTTTGTCTTTCGTGAGCGTAGGCGTAGGCAGTAAAGGGTGGTCTTAGAT
CAGGTGCCGGAGTGAAAGCCAGGTGCGCTCGAATCCCTTGAGTCCGCATTCCGGTGAGCAGGATA
GGATCCGGAGGCGTAGGAGTTCAATTAAGATCAAATGCTAGCGAG
Right flanking sequence: Indices 230725 -- 231224
CTCGCAATGTATCTTGTGCAAAATGAATAGTAGCGGGGATGCAAGAATTGCTTCAGCAGGATCTG
CTTTCGCTATTGGTAAGTTCCCTTCTTTCTTTGAATTTGTCTCGAAAATCAAAAAATTTCCTTAC
TTATAGAGCTAAGCCCTCTGTAAAGCACTGCCCTTGCCGCGATTCTCTTATCTGGAATCGACCTC
TAGTCCGCCTGTCCGCTCTTTGCTGTCTTTTTCGGTGAATCGCTTTCATCTCTGATTTACAACCA
GCCTTTCATTGGTCTAGGTCTAGTAGATCTAGGGATTCCCGTCTTTTCCTCCGCCATCAGTAAAT
GAATTCCGATTTATGTAAAGACTTCTGTGTAAATATATCCCCCTCCGAAAATCTCTCGAAATGGT
CCCCAAATGTTACAGGGGGGGTGAATTCTAGTGAATATGAGGAGGAAGCATCATCGGGAGAATCT
GCATCTCCTGCTTCTTCCCCGCTCTCTTGCCACGAGCTAGGTTTT
Found at i:241398 original size:18 final size:17
Alignment explanation
Indices: 241375--241409 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
241365 GATTCGTTGA
241375 TTCTTCTGATGGACTTGG
1 TTCTTCTGATGGA-TTGG
241393 TTCTTCTGATGGATTGG
1 TTCTTCTGATGGATTGG
241410 AATTCGTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.11, C:0.14, G:0.29, T:0.46
Consensus pattern (17 bp):
TTCTTCTGATGGATTGG
Left flanking sequence: Indices 240875 -- 241374
GATGAATTGAGTCATTTTGGGGTCCACCCGTAGCAATTCGAATGCTTGGTAGGAAGAAAAAGGTG
GGTCACATATGTAATTCCCCTTTGCGAATCCGGTGCCAGCACGGTAATTGCCCCTCGGTGAACTG
GGCCTTATGCTTATAGGGCACAAACAAAGGATTCTATCTCCTGTACAATAGCAAGGATAGAAGCA
CCCTTTTTAATTAAATAAATAATAACAGTAGGATTTCGTAGACGAGATCAGCACGAGAGAGATAG
ATATTCGTTTTCGTCAGCTGATTAGCTACCATTAGGAATGGGACTAGCTGGGATAGCTTTGATCG
AGGTCTTGGGCTTTTCTTCGCCCCCATAAGGAGAACTCTTTCCCAAAGAAAGCAAGGAAATGCAA
TTGAAGAGAGAGACTAGCTCGAGCAAAGACTGAGGGAATGGAACTAAGAAATCGAGGACTTGGGC
TTTTCTTAGCCAATTAATCGAAACCATATTGTACCGATTCGTTGA
Right flanking sequence: Indices 241410 -- 241909
AATTCGTTCCTGGTTCATCCCGGAGAGGTGTAGGAAGGAATAAGCAAGGGATTAGCTCCCTACCG
TTGTGTTAGCGATGCCGTTTTCTTGCTGGGGAAGAGAACCGGCAAGGGATTCTCGAACAAGAGGA
CGAGCAAGGCTTTATCGAGGAGCAGGCTTATGCACCTTTTAAAAGTAGGTTCTTGTAATATGCAA
TTAGTGATGAAGGAATAAGCAAGTCTTCTACTAGTTGCGAATGAACTTGATTGGTAAGGCGTGTT
AGCGATGCCGTTTTCTTGCGGGGAGTGAAACAAGCAACGGTAGAGCGCACTAGCGCGAAAGCCGT
TGTGCGTTAGTCACGCGCATACGTTTTCTTGCTGTGAGAGAAGATCAACCGAAGGGGAAGGCCGT
GAACGAGTGGTAGCTATGCTTGCTAACGTGTGCAGCTAAAACCTTGACTTAATACCTGATATGAT
TGGGGGATGGTGTGAGGAGCTAGCCAAGGTAGGTCCGAGGGAAAT
Found at i:248916 original size:18 final size:18
Alignment explanation
Indices: 248876--248918 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
248866 AGAGCCCTGC
248876 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
248895 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
248912 CATAGTC
1 CATAGTC
248919 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 248376 -- 248875
ACGGAACCTAACAAAGAAGCATAGGTGTAGTTCCGTCAGGCTTCCCCTCGCTCTCCTTTCCCTAA
TATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCTACTGGCG
CTTCAAAAGGCGAAACTCTCAATTCTCGATAAAGGGCTTGTTATTTGAAAAGGCGGACACTTTGA
GTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCT
CCGGCTCCGCGCACCTGCCCTTTCGAAGCACTTTCTAGTGTGAACCACCAAGGAACGTCCCGCGT
TCCGGCTTGTTCGAATCGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAC
TATTCCCCCGTTCAAATTCCGTACCGTCACGTTCCGCCCTATCACGTAAGGGGGCCTTTAGTATT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCTTAGAGCCCTGC
Right flanking sequence: Indices 248919 -- 249418
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:295125 original size:13 final size:14
Alignment explanation
Indices: 295101--295129 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
295091 GCTATTCCCC
295101 TTTTATATGTCCTT
1 TTTTATATGTCCTT
295115 TTTTATA-GTCCTT
1 TTTTATATGTCCTT
295128 TT
1 TT
295130 GGTTGTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTATATGTCCTT
Left flanking sequence: Indices 294601 -- 295100
GCAAGCTAGCTGAAACTTGCTACTTGCCTGTAGTTTTCGAGCAAGGAAGGCTAGAATTTCTTTCC
TAGTTTGCTTGTGAGCGAGCAGTGTCCCGTTGTATACTGGGATGCACCTGTGTATAGCAGGATAG
ATAAGACTCGATTTTCTCTTGCTTCTAGTCGAAGATCTAAGGATAGATAGAGGAATGAGATTTTG
ATTTCCTCTAGGCCAGTACTAATGAGCGAAGGGCTCCCCCTGCCTCACCGTTGGAGGGGTTCCCG
AGCGTTAACTCATTCCATCCTCTATTCTAGGTCTCTCTTTATCCTTTAGTGTTATAGCCAGCTAG
GATATATTAGAATAGATTCTATCTCTCAAGCTTAGGGGTAGATCAGGACAGATAAGAATGAATTA
GCCATCTTTTTTCCTCCTCCTGTATGGTTAGAGCACTACTCTTGGATCCGTCCTGAGAGATCAAT
CCAAAGGTGGGATAACTAGACTTTCCCGAGGTTAAGCTATTCCCC
Right flanking sequence: Indices 295130 -- 295629
GGTTGTATCAAAATCTTAATATAAGAACTTGTTACCAGGCACTATTGATAAATAAAGATACGGAA
CCTGTCTATGACCACCCTCCTGTCTAGAGGGAGGAGCGTAACTGCCTGTCTTGTCTAGTTAATAA
TGTTATCTCTGGAATTCGCCGGCAGTGAGTAAGTCAACCGAGTCTGATCTTCTTTCCCCCACGGG
TGCTTCTGGCATGTGAGCTTCTGGATTTCATCTTTATTCGTTGCTTGTTCCTTACTCAGGGAAAG
ATAAGAGGGAGTCTGTGAAAGATCCATTTACCCAGACGGTGTACGACAAATGAGTTCTCGGGCAT
GGGAAAAAGCCTTCGAGTGGGAACCGAGCTGTCCTCCTTTCCACGACTGGCTCTTTAAAGAGATG
GCGGGGAAGGGCGTGTTCTCACTCAGTCGTCCCGTCCAAGGCTCAACTCATGCGTGGTGGCAAAA
CCGGATACCATGAATATAGCCCGGTAACTTACTCGTTATAGGCTG
Found at i:311898 original size:13 final size:13
Alignment explanation
Indices: 311880--311909 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
311870 CCTATCGAGG
311880 TTTTTTTATTCTT
1 TTTTTTTATTCTT
311893 TTTTTTTATTCTT
1 TTTTTTTATTCTT
311906 TTTT
1 TTTT
311910 CTTTCTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTTTATTCTT
Left flanking sequence: Indices 311380 -- 311879
AAGCAGCCGAAGCAAGTTGCCCACTCCACTAATTGAGAGTGGCTAGCTTAACTCTGAGGAAGAGA
CCGAAGAAATGGCAATGGAGTGAGAACAGTATGACCCTTTGCTTTAAGGCAAGGTGGAGTAGCAA
GATTTTACCTTCTTCTCCCCTCTTCTCTCTTTGAATCGGCAGCTGGCCCTGATCAATGCGAAATT
TATCAATATGGGATCATGATTTGATTGAAAATGTGTAAGTCATCACATCAGAGAAGGGAGATTTA
ACAGAAAACCTTTCTTTATTTTGAAATAGCAGCTCAAGTAGAGCAAGAAACTTCCAATTCTGAGG
CTGTGAAGGCCGCTTAAGCCGCATTATTTACGCAATTCCTTGATCTGATCGGAACCTTACCCCCT
ACCCCCACAAGGGAATAAGAGCTCCGTTAAAGGATATCTATAGCTGCGCAGAGGGAAGCGCTTAG
AAGCTATGCTCTTCTTGAAGAAGTGGGAACATATCCCTATCGAGG
Right flanking sequence: Indices 311910 -- 312409
CTTTCTTTGTGGAAGGGAAGCAGTTCGGTGCAAGCACCAACTGAGAATAGAATAGAGACTGACAA
TAGAGGATTTCCATTCATTTTCCTATCTGCTATAGAAGTCAGATCTCTGTCACTGACGGCAAGCC
TTGATAGGTATGGCAAGTCTCTCTTTCTCTTACGCAATTTCTCAGTGTGGAGTGAGGTCTGAATT
CTCAATTTAGCTATTGCGTACAATCTCAGATTCTAACCTAGCTATCTATATCTATAAAATATTGG
AATGAAAACAAAGAACTTAGCAAAGAGAGATGGCAAGAGGAACGGGCTCAGGGCCTACTAGTATT
ATTTAATAAGACATGGAACTTGGGGCGCTCGGTAGCGATTTTACTTGGACCAGCATCGAGTGAAC
ATTTTCCCAACGGAAGGGGCTTGGCTTTGAAGCCGTAGCTAGCTAGACTAATGGAGCAGATTCAT
CTGCGGCCTCTGGTGGGATTGATGCTAGTAGTCTGTTCTGTACTT
Found at i:346022 original size:9 final size:9
Alignment explanation
Indices: 346008--346109 Score: 159
Period size: 9 Copynumber: 11.3 Consensus size: 9
345998 CTAGGAAGAG
*
346008 AAGATTCAA
1 AAGAATCAA
*
346017 AAGATTCAA
1 AAGAATCAA
346026 AAGAATCAA
1 AAGAATCAA
346035 AAGAATCAA
1 AAGAATCAA
*
346044 AAGATTCAA
1 AAGAATCAA
346053 AAGAATCAA
1 AAGAATCAA
346062 AAGAATCAA
1 AAGAATCAA
*
346071 AAGATTCAA
1 AAGAATCAA
*
346080 AAGATTCAA
1 AAGAATCAA
346089 AAGAATCAA
1 AAGAATCAA
346098 AAGAATCAA
1 AAGAATCAA
346107 AAG
1 AAG
346110 GATCGAACTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 88 1.00
ACGTcount: A:0.62, C:0.11, G:0.12, T:0.16
Consensus pattern (9 bp):
AAGAATCAA
Left flanking sequence: Indices 345508 -- 346007
CATTTGAAAGTGTCCCACGGTGATCTAATATCTTTTCAAGAAAATGACGCGAGAGCCCGCGGTGA
AGAAATAAGGAGATCTTTCTATATCGACATATCAGTTGAAAAAATCATAGGAAAATTCCTGGATC
ACCCGGTAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCGCCTACTCAAAACTAAGAGGGGG
TGCCGCCTACTACTAAAATCCCGGTTTTTGCAACGGTTGCGTTCTTCTATGCAAGAAAAAGACTT
AGAAAGAACAAAGAAGTTTGGATCCGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACA
GAATGAAGCAAAATTTGTATCATTTCAAATCGTTCCTTCTCTTCGATAAGAAAAACGAGAAAAAC
CGAAATCTTCTACTACTTAAAAGGGCAAGAAGTCCTATAGTTAAAAACTCTTATTTATATAGTAA
TTCGACCTATTGCTCCGGATCCCCCCATCAGTTTACTAGGAAGAG
Right flanking sequence: Indices 346110 -- 346609
GATCGAACTACCTAATCATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATG
GACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCACACCTTCATCTTCGGAGC
GGAAACGGACGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCGGACATATCTATCCGGATAG
AGGATAGTCTAGATCGATTCATAGATAGATCTCTCTCCATATAGATAGGTATCTCCGTGGATAGA
GATAAAGATAGGGATCCATCTAGATCTTGATTCACTATTTCCATTTTTTTGGATTCCGCCTTTTT
TACGACAAGTTTTAAATCAGGAAACATCGTTTTTCAATTATGACTTGCTGGGTCGGAGCGTAGAC
GAGCGAGCAGAGCCCAGGAAACAGGGAAGCCCGTCATAGAGCAGTCGACTAGAAGTAAAAGACTG
CTGGCCTGAGAGAAGGCGGCCTCTCTCGGGAAACATGGCCCAATT
Found at i:346046 original size:27 final size:27
Alignment explanation
Indices: 346008--346109 Score: 177
Period size: 27 Copynumber: 3.8 Consensus size: 27
345998 CTAGGAAGAG
*
346008 AAGATTCAAAAGATTCAAAAGAATCAA
1 AAGAATCAAAAGATTCAAAAGAATCAA
346035 AAGAATCAAAAGATTCAAAAGAATCAA
1 AAGAATCAAAAGATTCAAAAGAATCAA
*
346062 AAGAATCAAAAGATTCAAAAGATTCAA
1 AAGAATCAAAAGATTCAAAAGAATCAA
*
346089 AAGAATCAAAAGAATCAAAAG
1 AAGAATCAAAAGATTCAAAAG
346110 GATCGAACTA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.62, C:0.11, G:0.12, T:0.16
Consensus pattern (27 bp):
AAGAATCAAAAGATTCAAAAGAATCAA
Left flanking sequence: Indices 345508 -- 346007
CATTTGAAAGTGTCCCACGGTGATCTAATATCTTTTCAAGAAAATGACGCGAGAGCCCGCGGTGA
AGAAATAAGGAGATCTTTCTATATCGACATATCAGTTGAAAAAATCATAGGAAAATTCCTGGATC
ACCCGGTAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCGCCTACTCAAAACTAAGAGGGGG
TGCCGCCTACTACTAAAATCCCGGTTTTTGCAACGGTTGCGTTCTTCTATGCAAGAAAAAGACTT
AGAAAGAACAAAGAAGTTTGGATCCGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACA
GAATGAAGCAAAATTTGTATCATTTCAAATCGTTCCTTCTCTTCGATAAGAAAAACGAGAAAAAC
CGAAATCTTCTACTACTTAAAAGGGCAAGAAGTCCTATAGTTAAAAACTCTTATTTATATAGTAA
TTCGACCTATTGCTCCGGATCCCCCCATCAGTTTACTAGGAAGAG
Right flanking sequence: Indices 346110 -- 346609
GATCGAACTACCTAATCATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATG
GACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCACACCTTCATCTTCGGAGC
GGAAACGGACGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCGGACATATCTATCCGGATAG
AGGATAGTCTAGATCGATTCATAGATAGATCTCTCTCCATATAGATAGGTATCTCCGTGGATAGA
GATAAAGATAGGGATCCATCTAGATCTTGATTCACTATTTCCATTTTTTTGGATTCCGCCTTTTT
TACGACAAGTTTTAAATCAGGAAACATCGTTTTTCAATTATGACTTGCTGGGTCGGAGCGTAGAC
GAGCGAGCAGAGCCCAGGAAACAGGGAAGCCCGTCATAGAGCAGTCGACTAGAAGTAAAAGACTG
CTGGCCTGAGAGAAGGCGGCCTCTCTCGGGAAACATGGCCCAATT
Found at i:373278 original size:15 final size:16
Alignment explanation
Indices: 373258--373287 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
373248 CTCAGTCAGG
373258 AAGCAG-AAAGCCGTC
1 AAGCAGTAAAGCCGTC
373273 AAGCAGTAAAGCCGT
1 AAGCAGTAAAGCCGT
373288 ACAGTAGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.23, G:0.27, T:0.10
Consensus pattern (16 bp):
AAGCAGTAAAGCCGTC
Left flanking sequence: Indices 372758 -- 373257
GTCGACGACTCGAATCCTTACTACGAGGATATCCCGCAAACAATCCATCTTAAGCAGCTGCTCAT
CATCGAAATCTCTTCATCAAAGAATCGAGTCCACAACACAAGCCTTCGAAAAGCAGCACTACAGA
AAGGGCAAGACCCCCCGGAAAGAGGCCCTCATTAGACACACTTCAAAGGAAATAAGAAAACTTTC
TAAAAACAAAAAACAAAAACGCGTATGTATATAATCATAATCAAAAACAAGAAAGAGTCTTCTAA
ACCTAAGACTCGCGGGGCAGAGAAGCAAGTCCAGTGAGAGAAGCAAAAGAAGCGAGCAGGAGAAG
TTACTAGCTATTGGGTTGGAAGAGCAGGGAGAAGAGTAGGAAAGGAAGTCAAAGAGTTTTCTTTT
TTTTCGGGAATGAAAAGAGCGGTTGGTACAGTGTTGGCGGGCGAAGGAAACCCATTTTTCTAGTA
GGCGCTTGGCTTGATTGAAAAGTATGTTTTGCCTTCTCAGTCAGG
Right flanking sequence: Indices 373288 -- 373787
ACAGTAGCGAGCGAGAGCGAGGATTTCCATCTTTCTGGTAGCAATTGGCTTTCTAGTAGCAATTG
GCAGTCAGCAAGCACTTGCTTTGATTTACAAGTCTCTTTCTGTCTATCAGTTAGCAAGCGAGTAG
GGGAACCGTTCCTTCCGTTCAGTAAGGGAATACAAGCATTACGGGGATTTTTATAAAAGGAATAT
GAATATGACTCTTCCCAACTCAAGTCAAGCGAAGCGTAGTGAGGAAGGAGGGGAAGAACTACTAG
AGAAAGGCTAAGTGAAGTACTTCTCGGGACTTCTCTTTTCTTCTTTCAAATTCTTCTCCTCTTGC
TTATCACCGACTTTCCGAGCGTAGTCTGTAGTAGGGAGGGCCATTCTCGCAGGAGTTGGAGTAGG
AACATGACAAACCATTAGAATGCATTCTCGCAGGAAGTAGCCATGTTGCCTGCTTTCGTTCCTTT
CGTCTCGAAGGCCGGTTCAGTAAGAGTTCAAATCCTTCTAACTGG
Found at i:373341 original size:18 final size:18
Alignment explanation
Indices: 373318--373354 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
373308 GGATTTCCAT
*
373318 CTTTCTGGTAGCAATTGG
1 CTTTCTAGTAGCAATTGG
373336 CTTTCTAGTAGCAATTGG
1 CTTTCTAGTAGCAATTGG
373354 C
1 C
373355 AGTCAGCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (18 bp):
CTTTCTAGTAGCAATTGG
Left flanking sequence: Indices 372818 -- 373317
CTCATCATCGAAATCTCTTCATCAAAGAATCGAGTCCACAACACAAGCCTTCGAAAAGCAGCACT
ACAGAAAGGGCAAGACCCCCCGGAAAGAGGCCCTCATTAGACACACTTCAAAGGAAATAAGAAAA
CTTTCTAAAAACAAAAAACAAAAACGCGTATGTATATAATCATAATCAAAAACAAGAAAGAGTCT
TCTAAACCTAAGACTCGCGGGGCAGAGAAGCAAGTCCAGTGAGAGAAGCAAAAGAAGCGAGCAGG
AGAAGTTACTAGCTATTGGGTTGGAAGAGCAGGGAGAAGAGTAGGAAAGGAAGTCAAAGAGTTTT
CTTTTTTTTCGGGAATGAAAAGAGCGGTTGGTACAGTGTTGGCGGGCGAAGGAAACCCATTTTTC
TAGTAGGCGCTTGGCTTGATTGAAAAGTATGTTTTGCCTTCTCAGTCAGGAAGCAGAAAGCCGTC
AAGCAGTAAAGCCGTACAGTAGCGAGCGAGAGCGAGGATTTCCAT
Right flanking sequence: Indices 373355 -- 373854
AGTCAGCAAGCACTTGCTTTGATTTACAAGTCTCTTTCTGTCTATCAGTTAGCAAGCGAGTAGGG
GAACCGTTCCTTCCGTTCAGTAAGGGAATACAAGCATTACGGGGATTTTTATAAAAGGAATATGA
ATATGACTCTTCCCAACTCAAGTCAAGCGAAGCGTAGTGAGGAAGGAGGGGAAGAACTACTAGAG
AAAGGCTAAGTGAAGTACTTCTCGGGACTTCTCTTTTCTTCTTTCAAATTCTTCTCCTCTTGCTT
ATCACCGACTTTCCGAGCGTAGTCTGTAGTAGGGAGGGCCATTCTCGCAGGAGTTGGAGTAGGAA
CATGACAAACCATTAGAATGCATTCTCGCAGGAAGTAGCCATGTTGCCTGCTTTCGTTCCTTTCG
TCTCGAAGGCCGGTTCAGTAAGAGTTCAAATCCTTCTAACTGGCTAGTGCATTAAGGTGGCATGT
CTTACTCCGGGCCAGCAGTGAACGAAGTGTTAAAGTAGAGAAAGC
Found at i:374192 original size:15 final size:15
Alignment explanation
Indices: 374151--374194 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 15
374141 GGGGGCCGCC
* *
374151 CCTTTGAAGCAAATG
1 CCTTAGAAGCTAATG
374166 CCTGTGAGAAGCTAATG
1 CCT-T-AGAAGCTAATG
374183 CCTTAGAAGCTA
1 CCTTAGAAGCTA
374195 CAGGACATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 11 0.44
16 2 0.08
17 12 0.48
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (15 bp):
CCTTAGAAGCTAATG
Left flanking sequence: Indices 373651 -- 374150
GGCCATTCTCGCAGGAGTTGGAGTAGGAACATGACAAACCATTAGAATGCATTCTCGCAGGAAGT
AGCCATGTTGCCTGCTTTCGTTCCTTTCGTCTCGAAGGCCGGTTCAGTAAGAGTTCAAATCCTTC
TAACTGGCTAGTGCATTAAGGTGGCATGTCTTACTCCGGGCCAGCAGTGAACGAAGTGTTAAAGT
AGAGAAAGCTAGCGTTCCGTACTCAGCCGGCCAAGCAAAACTCCAGCTAAGCTAATAGCTCTAAT
TGTGGGGATATCTAAAAAATATGCTCTCTCTCTCATCCACATCAAAATCTTTGTCAAGCTGGACC
CTGATGAGGGATGGGAATGGCTGAATCCGTCTGCCCTTTTCTTCGTACGCAAGTAAGCAACTGGC
CTTAGATTGTATCGAGCTACATGCCCTTCTCATAAGATGTTGTAAGCTACGGGCCATAAAATCTC
CGACGAAGCTTAAAGCAGGCATCAAGAGCTAAGAAGGGGGCCGCC
Right flanking sequence: Indices 374195 -- 374694
CAGGACATAGAAGCAGCACCTAAGAAGCAGGCCAACAAGCGGATTGAATCTTTTCCAGTCTATTT
TCTGGCGGCCTCGAAACAAAGGATTTTTATATTCCTTCTGCTTTGGACAAAATAAGTGGAGTGGA
CAGATGAGTTGAATAATACAAGGACAGATAAGCTAGGCGAGGTTCCCCCTTTGATATCTCCCAAC
CTAAAGGCTTTATTCAGAGGTGGGTCTTTGCCTACTCTTTCGATGAAGGGTGCACTACAAGACAA
TCGGTACCATAGGGATCAAATGGGGGATTTCGTCGATATTGAGTCGACTATAAACTACTCATCTT
GCTTTGAACCGTCGTTGTGTATGGGAAAGAGGGGTTCGTTCTACCTATGCTTGGTTGGGAAAAGG
GTGAATGGTCGTCCCAAAAGGGACGGGAAAAAACCCACTAGAAAGAACGGGCCCAGGGTAGTCCA
CTTTATCCGTGACTCTGAGTACAAGATTTCCGGGATCAAGAAACG
Found at i:409351 original size:36 final size:36
Alignment explanation
Indices: 409304--409375 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
409294 CTACGACGAT
409304 GGTAGGATACCCGGAGTATAGTGAAAGAGGAAGGGC
1 GGTAGGATACCCGGAGTATAGTGAAAGAGGAAGGGC
409340 GGTAGGATACCCGGAGTATAGTGAAAGAGGAAGGGC
1 GGTAGGATACCCGGAGTATAGTGAAAGAGGAAGGGC
409376 TGGCTTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.42, T:0.14
Consensus pattern (36 bp):
GGTAGGATACCCGGAGTATAGTGAAAGAGGAAGGGC
Left flanking sequence: Indices 408804 -- 409303
AAGGAACAAGCAACGGCGTACTACTAATAGTTAGTTGCGAAAGCCGTTGCGGGGCATACTCTTGC
TGGGTCCGACCGAACGTAAGACTAGAGCAACCGAAGGAGCCTTGCAGCTGTTTACTTTTTTCTTT
TGGCAAGAGCCCCTGCCACCTTCAAACTCTTTCGGCATGCATTGGAAATCATGGCCTGGCTACGA
TATGCTCTCAGGTCTAGGCAAAGAAGGGCAAGGGATTAAGATCCCAATCAAGACTACTCGCTACT
AACTGAAGGCGTGACGCTCGTGCTTCTTTCGAGGAAACCTTACGCTGTGTAAGCTTAAAGAATAG
GTGGTCATGTGATGAGATTGGCAGTCCAATATTCATGCTTTGAAAACAAGACGTGAGTGGATACT
TTCTCTTTCGACAACATTGGGTCCGGAAGTTCGATATCGAGATCAGAGCTTGTAGCTCAATGGCT
AGGCCTGAACTCGCTTTCCTTATGTAGCTATTTCCCTACGACGAT
Right flanking sequence: Indices 409376 -- 409875
TGGCTTACTTAAAACTGTTTTGGGACGCCACCTAATGAGAGCTGGTAAAGAGATTACTTATTCTT
CTTAACAGACAGGGACTGCTCTCACCTTTGCCTACATTTATGAACCCGAGATCGAGAGAAGACCA
CCCGAACACGCTATCTTGAACCGAGAAGGGCGAAACCCGATAAGCAAGCCGAAATGGAGAGCATG
ACCCTACTATACTAGATCGAAAGCACTAGCCGGAAAGAAAGCCTAGACTGCTACTTGCTTTCCTG
CTCTCTCTCACTATCCTAATGAAAGGTCAAGCCTAAGATTGAGTGAGGGGTCTTCGGGAACAAGA
ATCCACGATTTGATACCGCTCTCCCACATCAAGAATAAAAAAGGTCTTCTTTCGCTGCCTACAAA
GAATTAGGGTAATAAAAGCCGGAGCTAATGATAGGAACTGTTTATCCCCGATCTTTTGGTTGACA
ACAAAAAGAGCTATGTTAGCCCAGTTTAGTTGTTGATGGACTAAG
Done.