Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MK574877
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 701719
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 800 characters in sequence are not A, C, G, or T
Found at i:1081 original size:33 final size:33
Alignment explanation
Indices: 1034--1113 Score: 123
Period size: 30 Copynumber: 2.5 Consensus size: 33
1024 GAGAAAAGGC
1034 ATGAAGG-GGCTTACTAATAAAGATAAGGCATGA
1 ATGAAGGAGG-TTACTAATAAAGATAAGGCATGA
1067 ATGAAGGAGGTTAC---TAAAGATAAGGCATGA
1 ATGAAGGAGGTTACTAATAAAGATAAGGCATGA
1097 ATGAAGGAGGTTACTAA
1 ATGAAGGAGGTTACTAA
1114 GGAATGAAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
30 30 0.70
33 11 0.26
34 2 0.05
ACGTcount: A:0.42, C:0.07, G:0.29, T:0.21
Consensus pattern (33 bp):
ATGAAGGAGGTTACTAATAAAGATAAGGCATGA
Left flanking sequence: Indices 534 -- 1033
GAGTCCTTACCCCGCATTCATCAATATCAATAAAAGTAGCAGGCGTGAAGGTTTAGTATACTCAC
TTCTAGTTACCGCACAACGTCCTATCTTCATTCCCTTGGAACTATGTATTGCAGTTGGCAGATCA
CAGAAGGAAGTCAATAGCATACTAGAGTAGAGGGTAGGGGGGAAGGAACTGATTTAGCAATACAG
CTAAACCACTAATTATCTATAATAGGTGCCTATCTCTTTTCTTTTGTTACAGAATTAAAGAGTAA
GGCATGAAAGATCAGAGAAAAAGGAATCAGTCTTAGAAGTTCATAGACGGTTAAATGCAGTCCTC
GGATAATAACTAGGAGAGACAGAACTAGGAAGTTCTAACTCTAGCAACAGGGAAAGAGAACTCCT
AAGAGTAAGAGCAGCCCTTCGTGTAGGAAGGTGTAAGAGCGAAGCCACTCTTGCCCCTTCTTCCA
CTAGTCTTAGAGCTAGGAACTGGGAAAGAGTAACCGAGAAAAGGC
Right flanking sequence: Indices 1114 -- 1613
GGAATGAAGGAGCCTAGTCTATTTGAGGCGGGATGCCCAAGAATAGAAGTAGCCATATGCCGAAA
ATCGTCTTCTGTGATGTCAGGGAGAAATCGTCTGCTCACTTGCGACAAGAGGGCATTCTCTGCCA
TTGATTCTAGCACAACCGATTCGATGTCAAAGGACAAAGGAAAGGCGACAAAAGCTCTTATTCCA
ACAAGCCCAGAAAAGAAAGAGGAGAAATTGGCTTAATTCTTACCGATGATATTACCAGTTATTCC
GACAACAGCTTATGATATCACCCTCGGGTCACTCCCTAAAGAGTGAAATCCATTCCTTTAGCATA
GCAAGGCTACGTGGTCTTCTCTTCCCACAGCGGATTCTATACCAGTCTTCTATCCAACAGCGCTT
ACTCTTGAACCGGTTACTCTCGTTGCGGTTATTGCATCAAGCACGGGTTACGAAAGCAAGGGCGT
TAAGGCTTTCCCTCTCAGATGGGGCCTCAGGACTCTTTTATCGGT
Found at i:1087 original size:30 final size:30
Alignment explanation
Indices: 1051--1113 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
1041 GGCTTACTAA
1051 TAAAGATAAGGCATGAATGAAGGAGGTTAC
1 TAAAGATAAGGCATGAATGAAGGAGGTTAC
1081 TAAAGATAAGGCATGAATGAAGGAGGTTAC
1 TAAAGATAAGGCATGAATGAAGGAGGTTAC
1111 TAA
1 TAA
1114 GGAATGAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.44, C:0.06, G:0.29, T:0.21
Consensus pattern (30 bp):
TAAAGATAAGGCATGAATGAAGGAGGTTAC
Left flanking sequence: Indices 551 -- 1050
TCATCAATATCAATAAAAGTAGCAGGCGTGAAGGTTTAGTATACTCACTTCTAGTTACCGCACAA
CGTCCTATCTTCATTCCCTTGGAACTATGTATTGCAGTTGGCAGATCACAGAAGGAAGTCAATAG
CATACTAGAGTAGAGGGTAGGGGGGAAGGAACTGATTTAGCAATACAGCTAAACCACTAATTATC
TATAATAGGTGCCTATCTCTTTTCTTTTGTTACAGAATTAAAGAGTAAGGCATGAAAGATCAGAG
AAAAAGGAATCAGTCTTAGAAGTTCATAGACGGTTAAATGCAGTCCTCGGATAATAACTAGGAGA
GACAGAACTAGGAAGTTCTAACTCTAGCAACAGGGAAAGAGAACTCCTAAGAGTAAGAGCAGCCC
TTCGTGTAGGAAGGTGTAAGAGCGAAGCCACTCTTGCCCCTTCTTCCACTAGTCTTAGAGCTAGG
AACTGGGAAAGAGTAACCGAGAAAAGGCATGAAGGGGCTTACTAA
Right flanking sequence: Indices 1114 -- 1613
GGAATGAAGGAGCCTAGTCTATTTGAGGCGGGATGCCCAAGAATAGAAGTAGCCATATGCCGAAA
ATCGTCTTCTGTGATGTCAGGGAGAAATCGTCTGCTCACTTGCGACAAGAGGGCATTCTCTGCCA
TTGATTCTAGCACAACCGATTCGATGTCAAAGGACAAAGGAAAGGCGACAAAAGCTCTTATTCCA
ACAAGCCCAGAAAAGAAAGAGGAGAAATTGGCTTAATTCTTACCGATGATATTACCAGTTATTCC
GACAACAGCTTATGATATCACCCTCGGGTCACTCCCTAAAGAGTGAAATCCATTCCTTTAGCATA
GCAAGGCTACGTGGTCTTCTCTTCCCACAGCGGATTCTATACCAGTCTTCTATCCAACAGCGCTT
ACTCTTGAACCGGTTACTCTCGTTGCGGTTATTGCATCAAGCACGGGTTACGAAAGCAAGGGCGT
TAAGGCTTTCCCTCTCAGATGGGGCCTCAGGACTCTTTTATCGGT
Found at i:37126 original size:19 final size:19
Alignment explanation
Indices: 37102--37142 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
37092 ACCCCGGGAA
37102 AATCATTCTTCTAGGAACG
1 AATCATTCTTCTAGGAACG
*
37121 AATCATTCTTCTAGGAATG
1 AATCATTCTTCTAGGAACG
37140 AAT
1 AAT
37143 AATAGGGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (19 bp):
AATCATTCTTCTAGGAACG
Left flanking sequence: Indices 36602 -- 37101
AATAAAAACCTAACTTGAAGAAGCAATTCCCTACTTCGGTAGCTCAGCCTTAATCAGTATAGGGG
CGAGTCCAGTCCTTAATCAAGCGCTTTCTATCTATCTTTCATATTGAGTGCTCTCAGAGGTGCAT
GCCTTGACCCCTTTGCGGATGTCGCAGCACAAGCCTGACTTGTAAGTGAATCTCCAGACCGTCTT
TGTCCTCGCTTAGACCCTTATTGATTAGATTAGGGCACACTGCCTTAGTCAATAGGGGGAAGATC
TTGTACATAACATATATGGATACCGAGCAGAATACTCTCTTGAGCTCTTGCTTTGCTTTAGGGCT
TCTTAGTGATCAACCTTTCGCAGCCGCTTTCCTCTTCCGAACCAAGCTAAAGTAAGCAAGCTACC
TTTTGTCGAGCTTTAGCTTTCGCCTTCCTATCTTTCATTGAGTCCACGCTTTCGCTTTAACACCT
TCTTCTTATATGAAGATAGTTTAATATTTGAATAAACCCCGGGAA
Right flanking sequence: Indices 37143 -- 37642
AATAGGGAACTAATTGGCAGAAGGTGGTGCTCTTCTCTTATACGTAGTGCAGTTCTCTCCCTGTT
GAGGCTTTTCCCGTCCTTCCTTTTCTTTTAGAGTTTCAACTCCGCTTCTACTGACTTAAGAGCTT
TTTAGGAATCCTTTCTTTCTGCTTACTAACTATACTGGGCTAAGTTGGTTGCTCCCGAGAGTTCA
CATCATCATCAGTACTGGATAACTCTGAGCTCCAATCTGATCTCTTGCCTTTCCGAATTTCCAAT
AACTTTCAGTCCCTTCCCTCTTAGAGACATTTTCATTTGATCCTCGCTCGCCCTAATCAATAGGG
GGCTAGGCGTCCTCACTTTCATTTTGTCTGTAATCGAGTCAGTCCCGCCAGGAAAGATTCATTCT
TTTGAACCATGGCTCAAAACTACTACTACTAATTCACAAAGACTAAAGAAACTACTTTCCCCTTG
CTAACCAAGCGACTCCTATCTCCTATCTGAAGCTGCCAGCCACTC
Found at i:55576 original size:21 final size:21
Alignment explanation
Indices: 55550--55604 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
55540 CCCCCGTTGG
*
55550 TTGTTGGGTTTGACCAACCAC
1 TTGTTGGGCTTGACCAACCAC
* * **
55571 TTGTTGAGCTTGGCCCGCCAC
1 TTGTTGGGCTTGACCAACCAC
55592 TTGTTGGGCTTGA
1 TTGTTGGGCTTGA
55605 TTGTTCACAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.13, C:0.24, G:0.29, T:0.35
Consensus pattern (21 bp):
TTGTTGGGCTTGACCAACCAC
Left flanking sequence: Indices 55050 -- 55549
TCTCCTGTTGGCGAATCCCCTTGCTATTGTTCTTTTATAAATATATCCCATTCCTGCCTGTCTTG
CGGCACATGCGGTACCAGCTCTTGTTCTTGATGTGGCTCTTTCGGAAGTTGCGGAAGATAGTATA
GATGCTCCTGTTCTTTCTGCGGCAGTTGTGGATGCGCTTTCCTTTTTAGTATCCCGGTGCAGCTG
TCTTGTTTAAGCTATGGATCTTATATAGAGAAGGAGTGTGAAAGCTAGCTCTTGAAAGCAGTGCG
AGTTAGGCGCGAATCCCTTTATTTAGAAAGCAAAGCAATCCTTTAGGTAGTCAATCTATCCACAA
ATTCCTTTATTTTAATAGATATCCCCGCCCGCTTTTTGCCGTCCAACCTGGAATCAAATCTATGC
CGCCGGGTGTCTTCTCTTTCTCCTAGTTAGCAGACGAAGACGCGTCTTATCGTCTGCATCTAGAA
CTACTTCTAACTCAAGAACGCATTCTCCAGAGGTGCCCCCGTTGG
Right flanking sequence: Indices 55605 -- 56104
TTGTTCACACCAACCATACGTGCCGTCAAATTGGCAACTTCAGCTTCTTTTTCTTCCAATCGCCT
CCGCAGTTGTGCCAGCTCTTCTTCTATAGTGTTGTTAGCAGGTGGAGGAACAAAGTGTGATGTGG
AGGCAGCATCCGCTGCTGCGACCATAACTGACACCGTTTTAGGAATAAATTCGTCGGATACACTT
CTCGGAGATGGAAGTGGAGTGATTTCAGGAGAGATAACCGGGGTAGAAGCCTCCGAGAAACCTGA
TGAGGGGATTATCGGGAACTCCTCCTCAGCAACAAAAAGATTTAGAGAGAGAAAAAGGGGTTTGG
AGATCAGAGAGAGGAAGTAGGCTTTAGAGAAAAAGTCCCTCTTGTGCCGGTAGTAGGGAAAGCAG
CTGAGATAGAGAGAGCAGTTCTCCCTTAAAGTCCTTTATGGATTTTGAGTCGGGAATAGGGCTGT
GGCTTAGATCCCCTGATCGAGTAATGGGGTTTGTTTTTCTCTCGT
Found at i:57431 original size:15 final size:15
Alignment explanation
Indices: 57390--57435 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
57380 ATCCTCCATA
57390 CAGCCGGTACCTCCT
1 CAGCCGGTACCTCCT
* * *
57405 CAGGCGGGACCTTCT
1 CAGCCGGTACCTCCT
57420 CAGCCGGTACCTCCT
1 CAGCCGGTACCTCCT
57435 C
1 C
57436 TTCCGGCCCC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.13, C:0.43, G:0.24, T:0.20
Consensus pattern (15 bp):
CAGCCGGTACCTCCT
Left flanking sequence: Indices 56890 -- 57389
GTTAGGGCACAGCTGCCGGCTTCCCCAGCATCTCAAGTGATTAGGGAATAATCTATTTCTTATTA
GTTGAGTTTGCTTCGAATGAATAAAGTACTATACTCATTTTGGGGCTTTCTTACCCTGATGGTCG
CCGGTTTTGCCGGGCGTTTCATTGGAGCGGAAGTCAATCCTTTTCTAACAAAAATAAATTCTTAT
CTCGTTTTATTTTTCTTTTATTAGTTTGTATTGTTGTCTATAATATAATATTTTATAATTGCAGG
TCTAAATACAAAGCTTATTTTTTTTTTTGAGTCTATAGCGTAACTTTATTTTTATTGCACATCTC
TCGCATTTCCATTCTTTCGATGTTGCAAAATTGGATTTGTTTTGCTGTCTTAACTAGTGATTTAA
TAATGTCTGTTTCCTCATCGGATAACTCTTCGTCTGCTCGGGATACGCTCCGAGCGCTTATGAGA
TCCCCCCGTAGTCCACCACAGTTTGACCAGGGGGAATCCTCCATA
Right flanking sequence: Indices 57436 -- 57935
TTCCGGCCCCTTCCTCCCCTCCCCAACCAAGGGCTTTTTCATTCCGAGCCTCATTAGCGTGCTCG
TCTGCGAGCTATGCTGGTTCTGTAGAGTAAAGGCGCGCAACAACGAGAGAGAGAGGCGGGCTTGG
CGACCGAACGCGTCACGGCTATTCCTTCTGTACTACAGTTTGGTGGAGGAACTGTAAGAGAACAA
TTGAAATCCGTGCTCTAACTCGATATCTTCAGCGGAATCTTCATCTTCTCCAGTTGATGATGCAT
ATTCATATTGAACTTCAACCAATGTCACTTGCTCAACAACTGCCTTCTTCCACAGTAGCTTCCTC
TCCATCCTGAGGCGAGTCCGCAAATAACATTTTGTCCATTTCTTCTCCGTCTGTTGATGATGCTG
AAGCGGATCTAACTTCAACGGGTACTGGTAGATTTCCACTGGCACAGCGGCACTTCTGGCTTAAA
GGCTTGCTTTCCTGGCTCCTTTCAAAGGTAGGCTTATCGCCGAGG
Found at i:161138 original size:17 final size:17
Alignment explanation
Indices: 161118--161161 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
161108 ATGAACCTTT
161118 GGAGTACGAGCTTCGAA
1 GGAGTACGAGCTTCGAA
161135 GGAGTACGAGCTTCGAA
1 GGAGTACGAGCTTCGAA
*
161152 GGGGTACGAG
1 GGAGTACGAG
161162 TTTCCCGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.41, T:0.16
Consensus pattern (17 bp):
GGAGTACGAGCTTCGAA
Left flanking sequence: Indices 160618 -- 161117
CCTGAGCAACATCTTGCCCTCGCGCACGATCCCGAGCTCGAGCATGTTTACAGATTCGGTGATGT
CTTGAAAAAGGCCTGCGGGTCCTTGAGCTGAATATTCTGGATACTGATGACGGAGGTTATGGGGA
TTTTAGTTCTCCTTCTGCCAATAATTTCCTTATACTGGGGGCTACCGAGGAACACTTTGATGATG
TGACCTTTCAGTTCCTCACATACATGATTGCTGAGGTCCGTACGCGGACGCCGTTCCGTACCCTT
CACAAACCTTGTACTCTAAAGAGAACTCCATTGTTTACAATGACGATTGCTTTGTTGAAAGATAT
TGGGCTTCGCCAAGTCGCTATCGCTCTGTTTCGCTGATCGCACTTGTTGTACCAACTGGCGTGCA
ATCTGCGAGGGGGCTTCTTGTTTATACGGATATTAGCGGATATTAGCCGGAGATTTCCCCGTCGG
GCAGAAATAATCGACGCAAAGAAGTACGGCTGTACATGAACCTTT
Right flanking sequence: Indices 161162 -- 161661
TTTCCCGAGAGGAGCTTCTTTGTACGAGCCTTGAAAGAGTACGAGCTTCCCAGTACGAACTCCTG
ACTATGAGCCTATCCACACGACCTCACTTTGATAATGATTCTTCTTCTGTTACTACCAGGAGCGA
ACGGTCTATGGACACTCCTAAGTAGAGAGTCTTTATTGTGTATGTATATTGTGTGTCCTCTCTCT
CACGTCCGTATGTACCAATTTAGGTGTAGGTTCCCTCGTAAGTTCAGTCAGTTATTTTGGGGATG
TAGTACGGTAGGGAATGTTTTAGAAGCAATAAGTGGGAGACAGCTGTCACCAGCTCATCAGCAAT
CACGGGGAGTTAGTTGGTCCCACGTGTGCACTTTTTCGATCGGCCAATAGCACACTGCCACGTGC
TGGTTGGTGATTGGCGAGAGCCCAGCTCTAATCCCTATAAATAGGGGTTGTCTCCCTCATTTCAG
GGAGAGAGTTCGGACAGACTTTGAAGAAGATAAATTTGAGACTAA
Found at i:266867 original size:26 final size:26
Alignment explanation
Indices: 266831--266882 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
266821 TCAGTTTAAG
266831 CTTAGGACATACCCAGGCTAATATGA
1 CTTAGGACATACCCAGGCTAATATGA
* *
266857 CTTAGGACATAGCCATGCTAATATGA
1 CTTAGGACATACCCAGGCTAATATGA
266883 TCAGTCGTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGGACATACCCAGGCTAATATGA
Left flanking sequence: Indices 266331 -- 266830
AGATGAAGAAAGATAGAACAACAATTGAAATAGATAGCCCTGCCTTGAAAATAGCAGTTTTGCTG
TTTTATTGAGAGGTGGAAGTTGCGGAAGATAGTATAGATGCCAGAGAGATTTAGTAGGAAAGTGG
AAGACCGGTCTTGGGACTTTAGACCGGAGGAGAAGAATAGGTAGGTATAAGCTGTCTAGCGACCA
GCAACCCTCTTGCAGCTTATCTGCTTTCGTAACCACTCATTTCCGGTTCTCTCAAACAGATCGGG
GGCACACCTTAGTCATTCAACAGGAATTCCCTGTTCCTAGGGGAAGAAAGACTAAGCCTAATACC
TTTACCTTCCCTCCAAAGGTATAGCTCTGCTTTCAGACTCCTTTTATGCTTCGCTTTTATACAAT
TATGAACTCTAGTTGATCTATTCAATTCTAACTTCTAACCTAGATGGAAATGGGACCTGATCCCT
CCGTAGCTTAGGACATACGTTTATGCTGCTAACTCTCAGTTTAAG
Right flanking sequence: Indices 266883 -- 267382
TCAGTCGTAGAACCAGCTAACCATAGACCACCGACGAATGTCACTATCATAAACCCTATCGCTAT
TGCCCCTCCTAGGGCTCTTTGTTCAGTTGTGGTAGTCTGACCTTCTTCTTCGTCTGCTAGTGCAC
TATTCCCATGCTCCTGCAAAGCTGTAGAGATTTGCTATTCTTTCCTTTACTGCTGGGTGAATCTC
TGGACAACCGCTATTAGAGGCCGTTTCTTTTATGATATCCACCTGATGAGGGTCTAGAATGAGAG
CGGGATCCAAGTCAAGTAGCTGAGGTACGGGTATGACTAATAAAAAGAAGAAGGCTAGTAGTATA
GATCCCGCGATTACGATATATGAAAGGAGTACGGATTGCGTGCTAGCAGGGTCGTTCCCCCGAAC
CCAAGGCTCGTCGATTAAGGAACGAACGGTTCGATGCCTAATCGCTTCCTGAATTTCATGGAATC
TATCGACCTCATATGGGCCCAGTCGGTGACAAATCCTCAAAAAGG
Found at i:302807 original size:17 final size:18
Alignment explanation
Indices: 302773--302809 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
302763 TTCCATCTTA
302773 TCATATTGATTCTATTTT
1 TCATATTGATTCTATTTT
*
302791 TCATATTTATT-TATTTT
1 TCATATTGATTCTATTTT
302808 TC
1 TC
302810 CACCAAGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.22, C:0.11, G:0.03, T:0.65
Consensus pattern (18 bp):
TCATATTGATTCTATTTT
Left flanking sequence: Indices 302273 -- 302772
ATCTATAGTAAGGGGCCCTTTCTTGCTGGGCTTGAATGCTTACCTTATTCTTAGAGAAAGGGGAA
AGGGGCAACCAACATAGGGGGCTAGCTTGCTTCCACTGGTGGCGGGCGGGCGAAGGGTCCAAAGG
ACACGTAGCCGGGGTCGAGTAAAAAAATCCAAGAGTTCCATTTTCCTTCTTGTTCATCAATCGGA
AATCAAGACAAACCGGGCACTACGGTGAGACGTGAAAACACCCGATCCCATTCCGACCTCGATAT
GTGGAATCGTCTTGCGCCATATGTACTGAGATTGTTCGGGAGACATGGTCCAAGCCCGGTGAAGA
AATGAAAATTTCAAAGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGCTATAAC
GTAAGTAACTCAGTGCTCTCCTTAATTGGAAATGAAAGAAAGAAAAAATAAAATGTTCGGATCCT
CCCACATGTTAAATCTTGTTTTCACATTACAAATTTTCCATCTTA
Right flanking sequence: Indices 302810 -- 303309
CACCAAGTTGTATGTGCGTAATTCAAGTTTTCACCCCATTCACCTTCGGGAAGTTTTATCTTCTT
TCGAGCAACGCATTTTTTTCTTTTTTATAAAAAAGAAAGATTTTCATAATTTAATTCGAAGAAAA
GTACGAAAATCTTTCTTTTGTTTTGTAAAGACGAAGAGAGAAATTCGATTTTCTCTTCTATTTAC
TACGGCGACGAAGAATCAAATTATCACTATATTTATTCCTTTTTCTACTTCTTCTTCCAAGTGCA
GGATAACCCCAAGGAGTTGTGGGTTTTTTTCTACCAATTGGGGCCCTCCCTTCACCACCCCCATG
GGGATGGTCTACAGGGTTCATAACTACTCCTCTTACTACAGGACGCTTACCTAGCCAACGCTTAG
ATCCGGCTCTACCCAAACTTTTCTGGTTCACCCCAACATTCCCCACTTGTCCGACTGTTGCTGAG
CAGTTTTTGGATATCAAACGGACCTCCCCAGAAGGTAATTTTAAT
Found at i:319701 original size:18 final size:18
Alignment explanation
Indices: 319678--319712 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
319668 ACTGCATGAA
*
319678 CTGATTCTAATCCTTGAG
1 CTGATTCGAATCCTTGAG
*
319696 CTGATTGGAATCCTTGA
1 CTGATTCGAATCCTTGA
319713 ATTCGCCCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (18 bp):
CTGATTCGAATCCTTGAG
Left flanking sequence: Indices 319178 -- 319677
ACCAAAGAATTGCATTGCATATGTAACGGTTTCATCCGAGACGACTGATCTAAGAGTATAGAATA
GAGGGTAACGCGGGTGGAATAATAAAGATAGGAAAGAATGTTCCCTACCTAACCGTATACTAAGA
ACTATAGGGTGGAGGACGGCATAGAGAAAACAAACACTAGCCGAACAACCAGTAGAGCGGGGATA
ACGTACGAAACCGATAGTGAGAGCTAGCTGAGCAATAGCACAAAAAAGAGGTCACGTTCGAACGG
TAAGCTACAACTAAGAAATATGTATATAATATAGAAGAGCATTTCCGCGGCCTGTAACACAATCG
TTTCGGATCCCCGCAAGCATGCGCTTCTGATTAGAAGGGTGGTTTACATGATCCGCTCGAAACTC
GAGATGTCCTATTTTCTTATAGGAAACTGCCCATTTAATCGATCTTGAGATTGAGGCGCTAGCCA
GAGATGACCCTCTTTGAAGATCTGGCCTCGCATGGACTGCATGAA
Right flanking sequence: Indices 319713 -- 320212
ATTCGCCCAGGGAAGAGGTATCAAGTTCAGACGATTTTGAAGACGATCAGACGAGAAATGAGATT
CTAACTAAGAGGGTTGCTGCAAAATACGCTTTTTACGCAATAAAATAAAGAAGAGTGAGCAGAGT
GGCTGTTGGTTTCGTTGAAGACGTGAAGGCGAGAACTCTCACCTCTGCCAGTGGGACTCAAAAAC
CATTGATTTCAGATTTCATTGGAGAATGAAAGTGAAACTGATTAAATCATAATAAGGATCGTGCG
CCTAATCCTCATAAGCTTCCGATTCGATTAGGGAAGTTCTTTATTCTTTATTTGGGATCGGATTC
AAGCTCATCAGAGTCAAGCTCAGAGGGGAAGGTTGGAGAAGTCCATTGTCTTTGGCTTATTCGCT
TCCAACCGTTGAATGAAAGCGAAAGTGGCTTTTTCAATCCCCCATCGTGGGGTAGAACTCTGATT
GGAAAGACCGATGCGTCTCAGGCTCAATCTTGGGCTTGCCTGGCA
Found at i:481275 original size:14 final size:13
Alignment explanation
Indices: 481240--481278 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
481230 AGCCCGTAGG
481240 CTAACTCCAAGGT
1 CTAACTCCAAGGT
* *
481253 TTCACTCCAAGAGT
1 CTAACTCCAAG-GT
481267 CTAACTCCAAGG
1 CTAACTCCAAGG
481279 CTTTACGGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (13 bp):
CTAACTCCAAGGT
Left flanking sequence: Indices 480740 -- 481239
CTTCAAATTCCTTGATGTAGGGTCAAGGGGATAACAGAAGTGAGTCTTGAAAGTGGATAAGTGAT
CATCCCTTTCTTTAAAGTCAGCTAATGAAACCAACCTTGGAGTTCCAGCTGTAAGTGAAGTTCAA
AATCTCTCTTCCTTTCGGTAAGCTCAGTACTCGAGGGAGGATCATAGAATCCACTCTTTACGTTA
CGGCTAGCGGTATCTGTTTCTGTATCGGCTTTATCTAGCGAGTGGGCTTCTTCGTTGAGTAGACG
TCTCGAGGGAACAAACCAGACAAAATCCGTTTTTTTAGTAAAAACTCCTGCTTTTGGCTTTCTCT
TCCGGTTGCGTAAGTCGGAAACACGTTCAGCAGACAGATCAGAAAAGAGCTTTCACTACTTTTAG
CTTGGCTTGACTTGACTACCGCCCTAAGCGCAAGGAATAAAAGAAAGAAGTCAGGCAAGTGGTTT
TCTCGATGAACTCCTTCCTTTTCTATTTCTTTTTGAGCCCGTAGG
Right flanking sequence: Indices 481279 -- 481778
CTTTACGGCTTGACGAGGGTTGACGAATCCTTGCACACTCCAACTACTGTACGAGAACCACGGGT
TGGGTTCTGCTTTCTCTTTGCACAGAGTAACTCGCAATTTGATGACAGCACTACATACAACCTTC
AAGGAAAGAACCTTGACTTCTTTCTTCTTTAGAGGAGGCTCACTCAGGGAATTTGCAGAGATAGA
TCGGCAAACTTATCAACCAACAAAATAAGACAAATAGAAATCCTCTCTTTCTCAATAGGCACATT
GCCTTCGCTTCCCTCATAGGACTTAGATGCTTACTCAGTCCCTCGAGACTAGCATTCGGGAGAAT
AAGACGCTTAAAGCAGTCCACATGAAACGAGGAAAGAGAACTGACTAAACCTCTCATTTACACAT
GGTCCTTTACCCGCCAAGAGACTGGCATTCAATCTTTCTTCAAAGAGGGAAGGGGTACGCTTTCA
CTCCAATCATCGGAATCGGATTGGACTCATTGAAATAGGAAGAAG
Found at i:488386 original size:19 final size:19
Alignment explanation
Indices: 488362--488399 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
488352 AAAATGCCTC
488362 TCTGAAAGATAGACTCTTT
1 TCTGAAAGATAGACTCTTT
488381 TCTGAAAGATAGACTCTTT
1 TCTGAAAGATAGACTCTTT
488400 CTAGAATTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (19 bp):
TCTGAAAGATAGACTCTTT
Left flanking sequence: Indices 487862 -- 488361
CCATGTGAGATGTCCCTTCTTAATCACTATCTTAATCAACCAAACCAGGACCCGGAATGGGTGGA
ATTTGTACGACAGGGCCTACAAACCCAAAGTCTTTCCCCTAGTCAATACGAGGTCATGGTTCGAG
ACTTCCTTAATACGGAGATGTGTGTGTCGACTCGAGAAAAAATTTCCGTATTATATCAAATCCTT
TTTTATGGGCGAGAGGATCCACAATTCTTTATTGATCCCATTGACCTCGATTACATAATTCATGT
CTATCTGGAGAAAAAAGAATTTAACCATCCCGCTCTCGCGGAGGTTCTGTTGAGTCTCAGTATAG
ACAGAGAAAACTCTCCTTTCTATACTGAGGTAAAAACTACCCAAGCAAAGCATTTCCAGGGCTTT
ATCAATTTAAGAAAGAAGGCCCAACTAGATCTCGTACGCCGAAACCATATTTTGAATGAAGCGAA
AGCTTTAGAAAATAGAATCCAATTTCTCCAATCCCAAAATGCCTC
Right flanking sequence: Indices 488400 -- 488899
CTAGAATTCCTTTAAGGAGGGAGTTATAACATTTGAATTTCTCTTACATTCTACGTTCCCGAAAC
GGATCCTATCAAATATTTCACATTTTCTATGATCATCTCTATTTCAGGTATTCGGGGAATCCTCC
TTAATAGACGAAATATTCCTATTATGTCAATGCCAATTGAATCAATGTTATTAGCTGTGAATTCG
AACTTTTTGGTATTTTCCGTTTCTTCGGATGATATGATGGGCCAATCATTTGCTTCATTGGTTCC
AACGGTGGCAGCTGCGGAATCTGCTATTGGGTCAGCCATTTTCGTTATTACTTTCCGAGTCCGAG
GGACTATTGCTGTAGAATCTATTAATAGCATTCAAGGTTAAACATGACTCCTAGAGAGTTACCAA
AATACGAAGTTCTCTTCCCCTTTCGTTCTCTTCTTTCTTTTTTATTTTTACTTGGTTGGCAGGGT
CAGGGCCTTTCTCGCTGGGCGAGCGCATCCGATTCTAAAGTCCTT
Found at i:497431 original size:33 final size:34
Alignment explanation
Indices: 497389--497466 Score: 140
Period size: 35 Copynumber: 2.3 Consensus size: 34
497379 CCTTTGAGTT
497389 CTCTTTAGAATATACCCT-AAAAATAAAAGTACA
1 CTCTTTAGAATATACCCTAAAAAATAAAAGTACA
497422 CTCTTTAGAATATACCCTAAAAAAATAAAAGTACA
1 CTCTTTAGAATATACCCT-AAAAAATAAAAGTACA
497457 CTCTTTAGAA
1 CTCTTTAGAA
497467 AATCAAATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
33 18 0.42
35 25 0.58
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.28
Consensus pattern (34 bp):
CTCTTTAGAATATACCCTAAAAAATAAAAGTACA
Left flanking sequence: Indices 496889 -- 497388
CCAACGAGCCTAGGCGGCCTAGGTGGACTTTGTCCACTTCCTATCAAAGCTCGAGTCTCCGGACT
TGAAGAAAATGGTGCCTACGAGACGGCTATGGTGTTGCACAGGAAAGTCTGTTGGGCAGCAAAAA
CTACGTAATTAATAAAAAAAGACTATTCTAACTCAGTCTTGCTGTTGCCAATCGTTTTCTCGCTC
GGAGGAAGGTATTTCCTTATTAAGTAAGTTCAAAGAATGGCTTGAGTGAAAGCTGGAGTGGCACA
AGACAGATTGAAAGCAAAGGGAAGGGAGGTTCCCTGTCCTTCCTAACCTTCCAAGAGCCTTCCTG
ACTGGCATTTCAACTGGGCTTGACTAAAGGGGGTTGTCCGGTTCTGATCCTCATTGTACTCGTCT
CAAGCTATTAAAAAAAGTACCTATACCCTTTGAGTTCTCTTTAGAATATAAAGTCAGTCCCAGTG
TTATAATATCTAATTACCCTAAAAAGTACCTATACCCTTTGAGTT
Right flanking sequence: Indices 497467 -- 497966
AATCAAATGTGGGTTTTATAGCTCACTTATTAATAACCTAAAGGCATATCTGCCCCGGAAAATCA
ATCCCAATAGCCGGATGCTCCCTACAGATTATAGTAAGGCTTCTATATATCAGTTAGGGAGAAGG
ATATAAAATCCAGGGTAAGGCAAAGGGCGGTGTGTCCAAAATAGTTTGCTACAAGACCTAGTGAT
GTGAGGATTCATATATAGTGTGACCTATCCGAATTTAAATTTACTATTGCTGATCTATAAGCAAG
CGACAAGTTCACGAAAGGAGCCGACTGGAGGGCATATAAGACGAAGGGCATAGGGTGTCGAATGT
CACTGAACCGCTAGGTAGTGACATTCCCCCGTAAGAGGGGAGTCTTGGGAGCCTCTGAAGGGGTG
AGCGAGGGGGGCAGGGGGGGGATGGGAATACCCCCCTCCCTAGCCCGTAGTCTTATAGGACCGCA
AGAAGGCAACTGAAGGGAACGCAAGGAGCGATCTAATAAAAGCGT
Found at i:498122 original size:23 final size:23
Alignment explanation
Indices: 498095--498156 Score: 115
Period size: 23 Copynumber: 2.7 Consensus size: 23
498085 ATGCTTGAAT
498095 CGTGTTATCGTACGTTGAAAAAC
1 CGTGTTATCGTACGTTGAAAAAC
498118 CGTGTTATCGTACGTTGAAAAAC
1 CGTGTTATCGTACGTTGAAAAAC
*
498141 CGTGTCATCGTACGTT
1 CGTGTTATCGTACGTT
498157 ATAGCAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (23 bp):
CGTGTTATCGTACGTTGAAAAAC
Left flanking sequence: Indices 497595 -- 498094
GGATATAAAATCCAGGGTAAGGCAAAGGGCGGTGTGTCCAAAATAGTTTGCTACAAGACCTAGTG
ATGTGAGGATTCATATATAGTGTGACCTATCCGAATTTAAATTTACTATTGCTGATCTATAAGCA
AGCGACAAGTTCACGAAAGGAGCCGACTGGAGGGCATATAAGACGAAGGGCATAGGGTGTCGAAT
GTCACTGAACCGCTAGGTAGTGACATTCCCCCGTAAGAGGGGAGTCTTGGGAGCCTCTGAAGGGG
TGAGCGAGGGGGGCAGGGGGGGGATGGGAATACCCCCCTCCCTAGCCCGTAGTCTTATAGGACCG
CAAGAAGGCAACTGAAGGGAACGCAAGGAGCGATCTAATAAAAGCGTTGAAATCGAAACGAAAGG
CATCACACCACTAGTTCTAAATAGCAAGCTAACCCGTACCATCGTACGTTGAAAAACCGTGCCAT
CGTACCATCGTACGTTGGTTCAAATAACGACGGAAATGCTTGAAT
Right flanking sequence: Indices 498157 -- 498656
ATAGCAAGCTAACTCGTGCCATCGTACGTTGGCTCAAATAACTAACGAATAATAATTTCCTTTTG
AATACGCCCGGGCTTATTAGTGAAAGAAGGACCAACGAGGAGCTAGGTAGGTACGGCCGATACCA
CAATACGGGGATATTATCCATCTTATGGGATAAGAAACAAATATAATGAACATATAGGATTCATT
CTATTTGACCCACTACGGTCGTGACAGGTTGATCATTGTCGTCAACTAGGAAGACCTCAGTCAGC
TTCCCGCCAATGAAAGCTGGTGACTTCTGTTCCAACTGGACTGGGGACGGTCAGAGTGCACCCAT
TGGACTCTGGAGCCAATGTTCTACATACAGAAGGACTGCACACAACAAAAGAAATCAAAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAATCGTTTTC
Found at i:499010 original size:33 final size:34
Alignment explanation
Indices: 498968--499045 Score: 140
Period size: 35 Copynumber: 2.3 Consensus size: 34
498958 CCTTTGAGTT
498968 CTCTTTAGAATATACCCT-AAAAATAAAAGTACA
1 CTCTTTAGAATATACCCTAAAAAATAAAAGTACA
499001 CTCTTTAGAATATACCCTAAAAAAATAAAAGTACA
1 CTCTTTAGAATATACCCT-AAAAAATAAAAGTACA
499036 CTCTTTAGAA
1 CTCTTTAGAA
499046 AATCAAATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
33 18 0.42
35 25 0.58
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.28
Consensus pattern (34 bp):
CTCTTTAGAATATACCCTAAAAAATAAAAGTACA
Left flanking sequence: Indices 498468 -- 498967
CAGAGTGCACCCATTGGACTCTGGAGCCAATGTTCTACATACAGAAGGACTGCACACAACAAAAG
AAATCAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAATCGTTTTCTCGCTC
GGAGGAAGGTATTTCCTTATTAAGTAAGTTCAAAGAATGGCTTGAGTGAAAGCTGGAGTGGCACA
AGACAGATTGAAAGCAAAGGGAAGGGAGGTTCCCTGTCCTTCCTAACCTTCCAAGAGCCTTCCTG
ACTGGCATTTCAACTGGGCTTGACTAAAGGGGGTTGTCCGGTTCTGATCCTCATTGTACTCGTCT
CAAGCTATTAAAAAAAGTACCTATACCCTTTGAGTTCTCTTTAGAATATAAAGTCAGTCCCAGTG
TTATAATATCTAATTACCCTAAAAAGTACCTATACCCTTTGAGTT
Right flanking sequence: Indices 499046 -- 499545
AATCAAATGTGGGTTTTATAGCTCACTTATTAATAACCTAAAGGCATATCTGCCCCGGAAAATCA
ATCCCAATAGCCGGATGCTCCCTACAGATTATAGTAAGGCTTCTATATATCAGTTAGGGAGAAGG
ATATAAAATCCAGGGTAAGGCAAAGGGCGGTGTGTCCAAAATAGTTTGCTACAAGACCTAGTGAT
GTGAGGATTCATATATAGTGTGACCTATCCGAATTTAAATTTACTATTGCTGATCTATAAGCAAG
CGACAAGTTCACGAAAGGAGCCGACTGGAGGGCATATAAGACGAAGGGCATAGGGTGTCGAATGT
CACTGAACCGCTAGGTAGTGACATTCCCCCGTAAGAGGGGAGTCTTGGGAGCCTCTGAAGGGGTG
AGCGAGGGGGGCAGGGGGGGTATGGGAATACCCCCCTCCCTAGCCCGTAGTCTTATAGGACCGCA
AGAAGGCAACTGAAGGGAACGCAAGGAGCGATCTAATAAAAGCGT
Found at i:499701 original size:23 final size:23
Alignment explanation
Indices: 499674--499735 Score: 115
Period size: 23 Copynumber: 2.7 Consensus size: 23
499664 ATGCTTGAAT
499674 CGTGTTATCGTACGTTGAAAAAC
1 CGTGTTATCGTACGTTGAAAAAC
499697 CGTGTTATCGTACGTTGAAAAAC
1 CGTGTTATCGTACGTTGAAAAAC
*
499720 CGTGTCATCGTACGTT
1 CGTGTTATCGTACGTT
499736 ATAGCAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (23 bp):
CGTGTTATCGTACGTTGAAAAAC
Left flanking sequence: Indices 499174 -- 499673
GGATATAAAATCCAGGGTAAGGCAAAGGGCGGTGTGTCCAAAATAGTTTGCTACAAGACCTAGTG
ATGTGAGGATTCATATATAGTGTGACCTATCCGAATTTAAATTTACTATTGCTGATCTATAAGCA
AGCGACAAGTTCACGAAAGGAGCCGACTGGAGGGCATATAAGACGAAGGGCATAGGGTGTCGAAT
GTCACTGAACCGCTAGGTAGTGACATTCCCCCGTAAGAGGGGAGTCTTGGGAGCCTCTGAAGGGG
TGAGCGAGGGGGGCAGGGGGGGTATGGGAATACCCCCCTCCCTAGCCCGTAGTCTTATAGGACCG
CAAGAAGGCAACTGAAGGGAACGCAAGGAGCGATCTAATAAAAGCGTTGAAATCGAAACGAAAGG
CATCACACCACTAGTTCTAAATAGCAAGCTAACCCGTACCATCGTACGTTGAAAAACCGTGCCAT
CGTACCATCGTACGTTGGTTCAAATAACGACGGAAATGCTTGAAT
Right flanking sequence: Indices 499736 -- 500235
ATAGCAAGCTAACTCGTGCCATCGTACGTTGGCTCAAATAACTAACGAATAATAATTTCCTTTTG
AATACGCCCGGGCTTATTAGTGAAAGAAGGACCAACGAGGAGCTAGGTAGGTACGGCCGATACCA
CAATACGGGGATATTATCCATCTTATGGGATAAGAAACAAATATAATGAACATATAGGATTCATT
CTATTTGACCCACTACGGTCGTGACAGGTTGATCATTGTCGTCAACTAGGAAGACCTCAGTCAGC
TTCCCGCCAATGAAAGCTGGTGACTTCTGTTCCAACTGGACTGGGGACGGTCAGAGTGCACCCAT
TGGACTCTGGAGCCAATGTTCTACATACAGAAGGACTGCACACAACAAAAGAAATCAAAAAAATT
AAAATGAAAAGAACACCATCAATTATGATGCGGCTTTGCAGTGCCGGAAACTGCAAAATACTAAT
TTTCGTACGATCTTATGCTGGTAATGCTAATAACAGTAAACAAAA
Found at i:536609 original size:13 final size:14
Alignment explanation
Indices: 536578--536610 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
536568 TCATACCCTA
536578 AAGTTGCAGAGATGC
1 AAGTTGCAGAGA-GC
536593 AAGTTGCAGAG-GC
1 AAGTTGCAGAGAGC
536606 AAGTT
1 AAGTT
536611 CCAACCGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
15 11 0.61
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.21
Consensus pattern (14 bp):
AAGTTGCAGAGAGC
Left flanking sequence: Indices 536078 -- 536577
CTCGCTCCGACGATTCTACGGCCGGAAAGAGAGAGAGCAGTGTGATTGGCTCTATAATTGAAATA
ATGGAAATGCTCTGTCGTAGAGCTTCGCTAGCAGTGTCGAGCTTTGCTCGCGATTCAACTGGAAC
TAAGGACCTGAATGGAATTTCAGAGCTCTCACGCTGCTATCTAAAGAATGAAGAAACCGCTACTG
AACGAGAGCGAGTGAAGTGAGTAAGCCCCTGACGAGATAGGGGCGAGCCAAAGAGAAGTTGTAGC
AAGGAGCTACTAAGGAGTGACTGTGTTGAAGCTTCAAACGTAGAGCTCGCGACGACTTCGAGCGA
ACTCCACGAGTGTGCCGAAAAAGACTAAAAAGAATCTGCGTTCAGTAAATCGCAATTCTTTTTGT
GTGTCGGGCAGTTAAGATTCGTCGCGTGATTGTCCGGGCGAGGTATAAAGCCAAAACAAGTTGGA
GTTCCCCGCCATCACCTCGCCTAGATACGGGGGCTTCATACCCTA
Right flanking sequence: Indices 536611 -- 537110
CCAACCGAGGTAGGAGATCCATCATATCCATACGAACAAACCAGCACAGGTAGCAGTGGTTGCCT
TTACGTTTATAGGGGGCTCGACTTTCCCCTTTGTCACTATCTCGCCCAGCATATCTGCCGAGAGC
AGGAGCATATCCAAGTCTCATATTCAGTTGAATCAGATCTAGCAGCGCTCACTACTGAGACGAAA
GAAAGGAGCAAGATACGGCCAAAAAAAAAGCCGGAGATTCTCGCGCAGGAACAAGCGTAGGCCTG
TAGCGTGCCCTTCACCCAAAAAGAAATGCTTTTCTTGGCGAAGCGAGGAAGCACAGTTGCGCGCC
TCTCCATAGCCCCTCTATACTCTATAGGCTATTAGTACCAAGCGCAAGCGCCTGATTTGGAAGCT
TGCTGTGTAATTTCATAAATAAACAAAAGTGTGTGAACCTCAGCGAGTCCGGGTTTCAAACTAGC
CTCCTAGACTGAACCGACCTTTTTCTTTTTAATAGGGTATAACTA
Found at i:580601 original size:23 final size:23
Alignment explanation
Indices: 580575--580626 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
580565 AAAGAGAGGG
* *
580575 AAAAATATTAAAAAAT-ATTAAAT
1 AAAAATA-AAAAAAATAAGTAAAT
580598 AAAAATAAAAAAAATAAGTAAAT
1 AAAAATAAAAAAAATAAGTAAAT
580621 AAAAAT
1 AAAAAT
580627 GAAGTAGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (23 bp):
AAAAATAAAAAAAATAAGTAAAT
Left flanking sequence: Indices 580075 -- 580574
ATAGAATAGAAAAGAACTGTCTTTTCTGTATCCTTTCCCCGGTTCCGTTGCTACCGCGGGCTTTA
CGCAATCGATCGGATTATATAGATATCCCTTCAACAAACATAGGTCATCGAAAGGATCTCGGAGA
CCCACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCG
CATGGATAAGCTCACACTAACCCGTCAATTTGGGATCCAATTCGAGATTTTCCTTGGGAGGTATC
GGGAAGGAATTGGAATATAAGAATATCGATTCATACAGAAGAAAAGGTTCTCTATTGATTCAAAC
ACTGTACCTATGGGATAGGGATAGAGGAAGAAGAAAAAATCGAAGATTTCACATAATACTTTTGA
TCGAAAAATCAATCTGATTTATTTCGTACCCCTCGCTCAATGAGAAAATGAGTCAAAATCTACAG
GATCAAACCTATGGGACTTAAGGAATGATATAAAAAAAGAGAGGG
Right flanking sequence: Indices 580627 -- 581126
GAAGTAGAAGAGCCCAGATTCCAAATGAACAAATTCAAACTTGAAAAGGATCTTTCTGATTCTCG
AAGAATGAGGGGCAAAGGGATTGATCGAGAAAGATCTCTTGTTCTTATTATAAGATCGTGATTGG
AGCCGCATATGTTTGGTAAAGAGAATAATCTTCTCCTTTGAGAAGAATCAAAAATAAAAATGGAA
AGTGTTCAATTGGAACATGAAAACGTGACTAAATGGGTCCTATCGGGACGGAGTGGAAGAAAGGA
GGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAG
GTGAAAATCTCATGTACGGTTCTGTAGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCAC
TATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATTAACCTCTGGAT
TTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTCACAAG
Found at i:585125 original size:33 final size:33
Alignment explanation
Indices: 585075--585137 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
585065 GATTCTCTCA
585075 GGGGGAGTCGTCCCCATGATTTGGAGTTGCTCG
1 GGGGGAGTCGTCCCCATGATTTGGAGTTGCTCG
*
585108 GGGGGATTCG-CCTCCATGATTTGGAGTTGC
1 GGGGGAGTCGTCC-CCATGATTTGGAGTTGC
585138 CCCGCTGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.13, C:0.21, G:0.38, T:0.29
Consensus pattern (33 bp):
GGGGGAGTCGTCCCCATGATTTGGAGTTGCTCG
Left flanking sequence: Indices 584575 -- 585074
ACCGGAATCCTATCTATGGGCCTGTACCTAAACTCTGAAAGCGGGAACCTCTATTGTCGTCCCAC
ATTCCGAAATGAAAGCGGTAACTCTAATTCCGTTTATCTCCTTAACAGTAGAGCCACTCCTAGTC
AGTTGAAGGGTCAGTTCAAGGTTAGCGTCCGATTGTGCGCAATGAATAAATCAATGTATTTGCGG
AAAATGGGACGCTGAAGGTCCGGGGTAGTAGCAGCCGATGAAAGCAGAGGCAAGAAGCCTACCAG
TCAAGCATTAGATACCTCTCTGGGAGCTCTTCGAGCTCGTATTCAGCTGGTTGACCCTGTCTGTG
TAAATAAGAAAGAAAGCGCTCTCCTAGCGTCGCCCGCGAATTTGAAAGAGCCTGCAGATCCTCGT
ATAGATTCCGAATGTTCTCATAGGACTTCACGGCAAGCTTCCTTAAGACCGGATCGTCATAGATT
TCGTACCAATGGTTACATCTTTCGAGCTTTCTTATGATTCTCTCA
Right flanking sequence: Indices 585138 -- 585637
CCCGCTGGGGTTCTAGTCGTAGCCTTTTTGTTCTTTTGACTAGCCCCGGCGGCAATCGAAAGTCT
TTATTCCGAGGAGTATTCCCCCCACACAAGGGGTTGTCCGTCCAGCTTGAAAAGGAACCCACAAA
TGGACGCCTAATTTATATGGAATTGAACATCCAACGTGCGCCCCTCCCATTCAGGGAAGACCCGC
CTTATTCTTTTCAGGGCTGTGTTTTTTGAGGCATCCCGGTTAAGGATGCCCGCGTGAAGGTTGTA
GCCGCTTTCGGAATTGCTTTCCTTCGCAACAAGAATGGCCCGGCAGTCAAAGAGTTCCCTAAGCC
GGTCCCTCACCCACTCAGGATTTGCGGTTGGTCTGCCCTCCGCGTGACTGAGTCTTAAAAGTATA
TATGGCAAAAAAGTAGAGATCTTAGTTTTAGTCATGGTGATTGTTTAACATCTAGTCAACTAGGT
TCTGAATGAGAATTAGAAGACTCGCAATTTCCAATTGTTCTCTAG
Found at i:616319 original size:18 final size:18
Alignment explanation
Indices: 616296--616333 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
616286 GCGCCCCTCT
616296 TTCGATTGGCCTTTCACC
1 TTCGATTGGCCTTTCACC
* *
616314 TTCGATTGTCTTTTCACC
1 TTCGATTGGCCTTTCACC
616332 TT
1 TT
616334 GTAAGGCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.29, G:0.13, T:0.47
Consensus pattern (18 bp):
TTCGATTGGCCTTTCACC
Left flanking sequence: Indices 615796 -- 616295
TTCGATTGCTTGATTGCTGGGATTGACAGCTTGAATTGGGGGGCCGGTTAAAGACTTCCAGCTGA
GAAAGATACAGATATAGATTTATAGGTCGAGGGGGCGGCAGAGATCAATTGAGAGGAAGGCAGTC
CTGCCTTCAGATAGATACGACTCGGCCTGGGGAAGAGGCAGATTGACAAGATTCCGCTACTTGTC
CAAAAGCAAGCGGAGGAGCCGGCAAATTCCAAGTTGCCGTTTCAGATGATTAATGCGGCAACTTG
GATATGAATATGCCATTATTATGTATTGTAAGTTATTTAGGTGACATACTCGCTTGCGGACTCTT
TCCGTCTTATCGGATATGAGTGTTACCTTCAAAGAGAGAAATGCTCTAGGTCTTCCTCAGCGGGC
ATGTGATCATTCTTCTTCTTCATTTGCCTTGGAATCTCAACCTATACACGGTCCTCACAGGAGAT
CCCCTCCTTATCCACAACACATGTGTGGTCCGGCCGCGCCCCTCT
Right flanking sequence: Indices 616334 -- 616833
GTAAGGCAAGCATACCCCCTCTGTTGGAGCTTCCCTACTTCGTCTTCTATCTCCCTTCTACCCCC
TGGACACCATTCTACCCAGTTGCTTTCGTGTATGGATCGAGAGCTTAGAATGCCGTTAGCATCCC
TATGACGTCCCTCCCTTCGTCAATCTTTTGCTTACCTGGGTCGTCTCTGCTGAACATCTCGTGGG
TGAAACTTTTATCCATTTTTATGTAACCCCTCCCCTCTAAAGAGGACGAAAGTAGAATGCCATGC
AGTTGTAGAACCCGGCTAATCAGCCTAATGTAAACACCAATCCACTCCCGAACCACGGAGCAGTC
AATTTCTTGTCAGATAATCCAAGATCCCAGTCCATTTATAGGACCCCCTGACACATTGGTAGCGG
TGACTGTCGACCAGGAGGGAAACCAAGTCTGGCCTCAAGAGTACCGATCCGAAATCTGGGAAAGT
CCCCTCATACGTAAATATATGGAGGATATGGGGTTCAACCCCAGC
Found at i:637401 original size:17 final size:18
Alignment explanation
Indices: 637369--637406 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
637359 GGAAGAGCTT
* *
637369 CTTCTCCTTCCTTGGCTG
1 CTTCTCCTTACTTGGCAG
637387 CTTCTCC-TACTTGGCAG
1 CTTCTCCTTACTTGGCAG
637404 CTT
1 CTT
637407 TTATCACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.05, C:0.37, G:0.16, T:0.42
Consensus pattern (18 bp):
CTTCTCCTTACTTGGCAG
Left flanking sequence: Indices 636869 -- 637368
TCATTATCCGAGCTATAGGTAGTTCATAGCTCAACGTAGTTGTTCCTATCCTAGCGATTTCCTAA
TAAAGAGTCCAACTGCCTGCTTGAACTGCTGTACAGAAGGAGCTATGAATATTAGCCAACCGCCT
ACTTGAAAGTGGAAGTTGTTTTGCTAACTGCCTACTCGCCTGCTTGGAAAGAAGGAAAGATAGGA
TTGGGCAATTCCGCCGGTTCCATCGCCTGGAATCTCGTCATCTGAGAAGGAGATAACATTGGGGG
ACATAACTATTCCCACCATGTTCTGGAGTGCATCTGGAGAAATGTCATTCGGGACATGTGCTTCT
TTCAGAATGGAGAGCAGAGCGTCCCTGTGTTTGTCTGAAGTAAGGAGCAGCGAGAGAATGTTGAT
ATGAGCTGGAGTCTTCTTCAGCTGCTCGACGACATCGTACTCACTCTTCTTCTTCTTCAAGACCC
TGAGCACTTCTGCAGTCTCTTTTTCTGTTAAAGGGGGAAGAGCTT
Right flanking sequence: Indices 637407 -- 637906
TTATCACTTTTAAGTAAAACTTATTATTTTTTGATTGGCTTTTACGACAGGAATAGCCTTATTGT
AATCCTTTTTCAAAAAAGTCTATCAAAACAGATTCAATGTTGTAGGGAACCGGCTCTGTATGCTG
CTAGTGCACGGGATAGAAAGCCATCATATGGAGCGTCTTCGTCTTGTCTTTTGTGTTGCGAGTGC
ATGCGTCCACCCCAGTCAACGGTTGGCAGGGCTTTCACAGGTACCTTGTACGTAGTTAAGGTGAA
GCTTTGTTTGATTTGATCCCGAACCGCCCGATCCCTATTTAGAAGCCCAGACCCCCTTTGCTCAT
GAAGACATACTACCAACTGGATTCCTTTTATAATGGACCCACTTGATAATGAAGAAAGAGGGTTG
CAACCAAAATGCTAAGTACGGGGACTAGGTTACGACGTTGGAAGACAAAGGGCTACTCCGTATTC
TTCCTAACCATCAGTTCGTATCGCAACTAAGAATCTATTTTCTTT
Found at i:657156 original size:26 final size:26
Alignment explanation
Indices: 657123--657174 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
657113 GAAAGATCTC
657123 CAATAGAGAAAGAGGTGTCTGGTGAT
1 CAATAGAGAAAGAGGTGTCTGGTGAT
* * *
657149 CAATAGAGGAATAGGTGTCTGTTGAT
1 CAATAGAGAAAGAGGTGTCTGGTGAT
657175 GGATCGGTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.08, G:0.33, T:0.27
Consensus pattern (26 bp):
CAATAGAGAAAGAGGTGTCTGGTGAT
Left flanking sequence: Indices 656623 -- 657122
CTGAACGAAAGCCTGAAGAAGCACGAGCTGGCTTGCCTTCGCTTAGGAAAAGTAAGCTTATTTGT
GGAACGAGACCAGGATATTATCTATCTTCCCCTCTTGGTTATGCCATTTTGGGCTTTGCGCTTCT
AGAATGTATTGCATTCGAAAGGCCTGGTTAGAGGAATAGGTGCCTCCTCATCCGTCATGAAATGG
TTGGAAGAGAGATTAGTAGCTCATGCGTTCCAAGGGAAAGATGTTCTTTCTAAGTTGTGAAATGA
ATTGGTGCCTGAGCTGCTCTAATTGCTTCAGCAGGAGTTGGTATCGGTATAGTTTTCCTTCGAAG
TTACTCTATTCATTCTGTGTCTAGAAATCCGTCATTGGCTAAACAATCATAAGATGAAATTGGAA
ATGTCAATCCGCTACGAAAGCGTGGTCTAAAACCCGAGGGAAGCATCCGCTATAGTGCGACCTTT
TACCAAGGGTAGCTCCGTCAGTGTGACTTTGTACAGAAAGATCTC
Right flanking sequence: Indices 657175 -- 657674
GGATCGGTGATGGGGAAAGATCTCCAATAGGGAAGTTGTATCGTAAATAGAGAAGTTGTGATGTC
CTGTGAAGGAAATGTGGTAAATAGAGATCTGTTGATCGTTGATGTGGAAATATCATAAGTAGAGT
TGTCTGTTGATCGTTGATGGTTGCTCGGTAGAATTGCTTCTAGTAAGGAACGAGTTGATCGATCG
AACAAACCACAAAAAGCGTTACCAAAAAGAGATGACGATGTGATTGTTTTCGGATTTGTCTTAGT
GATAGCGGATCAAAATCGTTGAGCGGTCAAAATCGTTGTATCGTTAACAAACGAAAGTGTATCCG
CTTTTTGTGATAGTGGAGCGAAAGAATAGTTCCGCGAAATCTTTGTATCTATTGATCTTTGTTGA
GATTGTGTTGGTCTTCCGTGTACCTGAGTACAAGATCGAAAAGAATCGACCCATGCCCAAAGACT
CCCATGCCTTTCTTAGCTAAGGAAAATCTTTCTTTCTGTGATCTT
Found at i:657466 original size:17 final size:18
Alignment explanation
Indices: 657438--657472 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
657428 TCTTAGTGAT
657438 AGCGGATCAAAATCGTTG
1 AGCGGATCAAAATCGTTG
657456 AGCGG-TCAAAATCGTTG
1 AGCGGATCAAAATCGTTG
657473 TATCGTTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (18 bp):
AGCGGATCAAAATCGTTG
Left flanking sequence: Indices 656938 -- 657437
TCCTTCGAAGTTACTCTATTCATTCTGTGTCTAGAAATCCGTCATTGGCTAAACAATCATAAGAT
GAAATTGGAAATGTCAATCCGCTACGAAAGCGTGGTCTAAAACCCGAGGGAAGCATCCGCTATAG
TGCGACCTTTTACCAAGGGTAGCTCCGTCAGTGTGACTTTGTACAGAAAGATCTCCAATAGAGAA
AGAGGTGTCTGGTGATCAATAGAGGAATAGGTGTCTGTTGATGGATCGGTGATGGGGAAAGATCT
CCAATAGGGAAGTTGTATCGTAAATAGAGAAGTTGTGATGTCCTGTGAAGGAAATGTGGTAAATA
GAGATCTGTTGATCGTTGATGTGGAAATATCATAAGTAGAGTTGTCTGTTGATCGTTGATGGTTG
CTCGGTAGAATTGCTTCTAGTAAGGAACGAGTTGATCGATCGAACAAACCACAAAAAGCGTTACC
AAAAAGAGATGACGATGTGATTGTTTTCGGATTTGTCTTAGTGAT
Right flanking sequence: Indices 657473 -- 657972
TATCGTTAACAAACGAAAGTGTATCCGCTTTTTGTGATAGTGGAGCGAAAGAATAGTTCCGCGAA
ATCTTTGTATCTATTGATCTTTGTTGAGATTGTGTTGGTCTTCCGTGTACCTGAGTACAAGATCG
AAAAGAATCGACCCATGCCCAAAGACTCCCATGCCTTTCTTAGCTAAGGAAAATCTTTCTTTCTG
TGATCTTCACGTACAGCTTCTTTTCCTGCTACACCCGGATGTCTATACATGTTCGGGAGACCTCT
TTCTTTGTGCTTTCTTCTCAACGAACTCGGTTCCGTCTTCCGTTCAGTCGCCCCTCTCGTCAGGG
GCTTATGCACTCCACGACTTTCCCAAGCCCGGTGAAGAAATGAAAAAAATAGGATGAAGATAGAA
CATGTTCGGTGCCTCGCCCTTGTCTCCTTCGCCGGAGACTGCAAATGATACGCTACTAAGGACCT
ATACATCCCGCAGAAATCACGCATGGCTCAAGTCCTCTCTCTTTC
Found at i:683764 original size:57 final size:57
Alignment explanation
Indices: 683695--683817 Score: 246
Period size: 57 Copynumber: 2.2 Consensus size: 57
683685 TAATACTTAT
683695 GGCGAAAGGAAGTCCCTGAAAGGAAGGTAACGGCTGGCTAGCCCCTACTACTATAAA
1 GGCGAAAGGAAGTCCCTGAAAGGAAGGTAACGGCTGGCTAGCCCCTACTACTATAAA
683752 GGCGAAAGGAAGTCCCTGAAAGGAAGGTAACGGCTGGCTAGCCCCTACTACTATAAA
1 GGCGAAAGGAAGTCCCTGAAAGGAAGGTAACGGCTGGCTAGCCCCTACTACTATAAA
683809 GGCGAAAGG
1 GGCGAAAGG
683818 TAGCGAAGTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 66 1.00
ACGTcount: A:0.33, C:0.22, G:0.30, T:0.15
Consensus pattern (57 bp):
GGCGAAAGGAAGTCCCTGAAAGGAAGGTAACGGCTGGCTAGCCCCTACTACTATAAA
Left flanking sequence: Indices 683195 -- 683694
CTCTTTAACAAGCTTTCTTTCTACAGATAAGTGCCAATAGATCGACGAAACTCCAGGTTTACTAT
CAGACAGATCTTTCACAGTAGAGATCCGTTACAGTTTCCCGATTAAAGCGAGAACAGCAATTCAT
TCTAAACCGCTATTCGTATGTGTACCGATTTCGAAATGCTTTCTCATAAGAAAAGAATAGGGTAC
TCTATTGGGGGATAGTCTTATATAGTTCTTTACTCTACGCTAATAAAAGAAGTTAGTAGACTAGC
TGAGCTCTTCTTATAACTCTAATGCTTGTGAGTAAGTAACTCTCTGGAAAGCCCTGTCCTTTAGA
GGAAGGAAAGCAAGCCCCTTCTACTATAAAGCAAAGCTATTGGATTCAAGCTAGGAAGCAAACGG
ATAGGGACATCGGTCGCGCATTCCGGTAGCAGCCTATTGAGTCTCGTGTCTGGGTGCGATTCCCT
TCCTTTTAATAGATATCTTCTTTCCTTTAGAACTCTAATACTTAT
Right flanking sequence: Indices 683818 -- 684317
TAGCGAAGTCTCATATACCATAAAGCCAAGAGCAGCATCGGGCAGGCGATAGTGGCTGAGGTAAG
CATTCCGGTCTTAAGCAAAGCCGTCCTGCCCCCTTCCTCTTTAGGGCCCCTCTCGTCTGGCGACT
CAACCTCTTTCATTGACATTACCTTTGCTTTCTTCACCTACTCGTCCTCAACAATTTCATTGCCT
TCTCTTTCCTTCCTGTCCAACTATAGTATAGCGTGACTCTTTTCCTGTTCTGCTTGCTGCTTGTT
CTGATCTCGTCTGTTCGCTCCTTGTCTAGTTCCGCCAACGGTCAGAGCTCGAGAACCTCTATGTA
TTCCTATCACCGAGGAAAAAGAGCGCTTGTAAAGAATGCCCCCATTGATGACATATTGTGCTGCG
AGCCTTCGGAGGGTTCGACGATCATTAGCAGTTGCGTCCTTCGGAAAGGCTTGGCTTTCCAAGTT
TGTTTTGATGTCGGAATACCATGGATGACCGTTGTGAGGATCTGC
Found at i:686009 original size:29 final size:30
Alignment explanation
Indices: 685947--686010 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
685937 AACAACAAAC
*
685947 AACTACCTAGCTACAGGAGGAGAACTACAG
1 AACTACCTAGCTACAGGAGGAGAACTACAA
685977 AACTA-CTAGCTACTAGGA-GAGGAACT-CAA
1 AACTACCTAGCTAC-AGGAGGA-GAACTACAA
686006 AACTA
1 AACTA
686011 GCTACAACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.16
Consensus pattern (30 bp):
AACTACCTAGCTACAGGAGGAGAACTACAA
Left flanking sequence: Indices 685447 -- 685946
TATCTCCTACATTCGACTAGCTACCATGGCTAGATCTAATTAGTTCTGTTCTGTCCTTGTTTGAT
AGATTGGTAGATAGATGCCCTACTGGCTTAGTTAGGTACTTACCTCAGGTATTGGATTACAGGAG
CAGAGCTGGCTCTATCCATACCATATAGGGAAGACGCAGATTGCTAATTGTTGTTGTTGCGTCTT
CCGTCTGCTAGGAGAGATCAAACTAGTCAATCCAGGGAAGATATAATAAAGAAGGAAGAGAAGAT
GGTTTAGGATTAGACTGATTTCGAAAGCTAATGAAAAGAGTCTATCAATCGGGAAAGGATAGATC
TAAGAGGCTAGGCTAACACTATCAAGGCAGGAAAGAGACATTCGCATACTAGCTATCACAAACTA
GATGCTTACAGTCCTCTCCCAGTGCAGTAAGTAATAAATACATCTAGAAAGAAGATATTCTCTAG
CCTAGAGGAAAGAGAACTACTAGAATAGGAATGCCAACAACAAAC
Right flanking sequence: Indices 686011 -- 686510
GCTACAACTAGCTACTAGCTACATGGTTTAGGAAGAGAAGACAGCTCCTATCCGAGCAAGCCTAA
CTCGTTGTGCTGATCGGACAAGCAGTATGTATTGATCGAAGCGGGTGTAAGGAGTTCCCCAACTG
ATCGAAGCGAGGGAGACGGGAAAGGCGAGAGGAGCGGGTGAGGTTTACGGATTGAAAGCAAGCGG
AGCGAGGAAGCAGGGAAGGACAGGCTTTGTGGGTTCCTCCCCTTAAGGCGCGCTGCCCGACCGAC
CGAGCAAGTAGGTTCTTTTCTCGAACGCAAGGATTTATTTTTCGGAGTGAACGAGATAGATTCGA
AAGCAAAGGCACATTGAGTACCCAACCATAAGTCATCCCTTGAAACCCTCTCGCCACGACAGATT
CACATCCTTAACGAACGTACAAATAAATCAACGAACCATCCCGTCGGGAGATGATATACTACTAT
TGAGTTTCGAACAGACAGACAAGCTATGGTCGAGTTACTTAGTTC
Found at i:693005 original size:16 final size:16
Alignment explanation
Indices: 692980--693017 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
692970 TAAAAGCGAA
*
692980 GATT-CCTTCCGCTTT
1 GATTCCCTTCCGCTAT
692995 GATTCCCTTCCGCTAT
1 GATTCCCTTCCGCTAT
693011 GATTCCC
1 GATTCCC
693018 ACCCGCATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.11, C:0.37, G:0.13, T:0.39
Consensus pattern (16 bp):
GATTCCCTTCCGCTAT
Left flanking sequence: Indices 692480 -- 692979
TATACCGTTCGTGCCCTACGACGAGTAGGCCACTCACTCCCTTTAGAGTTGGTTTAACACTAATA
AGGGCGCTGCGAGTGCTATCGATAAAGGCTGCACATGAAGCTGTGGGACTTGAGCTAGTGGCGTG
AATCGTCCGCTGCCTAGCTCAAGTCCAACAGCTAGCTCGCTGTCACTTGGTATCTGAGAAGAATT
CGACATCCTACTACTTCTAGTTAGTCTACCTACGTCATTCTTTCTTTACTTTAATAAATCAGTCA
ATTTACCATGGTAGAGAAGGCGAACCACAGAAAGGGAAACCTCACACTGGCCAATTTCACACCTT
CCGAATGTGCCATTTGACCAAATATGAAAGCTAATCAAAAGACACTAATTCATTTCGGGAACATG
AGAAAGGTATGCCCAGCTAACTAAGGGACATAACAAAGATTGGGACCTGAAGTAGTAAAACGAAG
AAGGTCAACCACCTGACTTGACCAACTACTGCAACTAAAAGCGAA
Right flanking sequence: Indices 693018 -- 693517
ACCCGCATAACACCTCACTACGATCGCCTTAGAGTACATCTGTACCTAAACCAGAGTCACAAGTC
TCTTCTCACTCATGAACGTATACTTGCCATACCCTTCAGCGATAAGTTCAGATGATAAATCATCC
GCAAAGCACGTTCCAGATTGGAATTGTGAAGCCCTAAACCTAACTGGGGTCTCGAAACGGATAGG
CTTAGAATACCACACCTGAAAAACAAAAGACTCCTTTCCTTACGCCCTAAACGTGTCCACCAAAA
CTGCAGCCCGGCTTTCAGGCTTCCAGCTACCGGACCACCCGGATGTCTTACTAGTCTAGTAGTCT
TCGGCATCTCATCATAACTTATTTATAACAACTATCTGATTTATTCCCATTGGACCGGTAAACAT
AAGTAGTGGCGTGCTTCACTTCCGCTTTCGGTCGGTAAACTGATTCGAGCCCAATTTACGGGGTT
TTTGAAACTTAACGTTTAGTGAACTGAAAAAACCGAACTTACATA
Done.