Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: OM066883

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 16969
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26


Found at i:7554 original size:12 final size:12

Alignment explanation


    Indices: 7537--7561  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       7527 CTGTGTCATT

                        
       7537 TCATCTAAAAAA
          1 TCATCTAAAAAA

                        
       7549 TCATCTAAAAAA
          1 TCATCTAAAAAA

             
       7561 T
          1 T

       7562 GTTTACTAAC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28


Consensus pattern (12 bp):   
TCATCTAAAAAA

Left flanking sequence: Indices 7037 -- 7536
ACTTCCGAAGCGCTTAAGGTTGTTCCGCAACTGCACCGTCACCCCAAACCTAACTCCAACAGTCA
GAAGTTTCACCCGCGACGAAGACTTCTCACCTTACAGAACATAAGAACCTAACGGGAATGAAGGC
CTGTTCCCCGGCAACATTACCTGACTTTGAAGCCGCAGCGTACACGCTCACTTCCCTTAACTAAC
CTATCCGGAATTGTGTTGTGGGAAGATTAAGAGGTCAGGTGCTAATAAACGCGCTTGCGACTGCA
GTTTTCCATCTCTCTGCAGTTTCTAATAAGCCGCCCCAGGCCCGGATGGATTCTCTGGGGACTTT
TTTACTCATTGTTGGGAGCCAATACCAGTAGCGGATGATGTTGTTGCTGCTGTCCAAGACTTCTT
TAGTGGAGGTTGCCTTCCAAGAGGATACACCTCCTCCTTCCTCGCCTTGATCCCTAAAACAGAGG
ATGCCTCCAAGTTTTCTGAGTTCCGTCCCATAAGCCTGTGTCATT


Right flanking sequence: Indices 7562 -- 8061
GTTTACTAACAGGTCGGGTGCTTCCAAAGATTATTTCACCTCAACAAGGTGCCTTCATCAGTGGA
AGAGGGGAGGTGAGTTGAGTATCCACTCTCTCTCTCGCCTTTCTTCAGCTTGCTTCTTCCTGTTC
GTCCATTCGGGACGGGGCAGGCAGCCCACATACATGAAGAGAAGAAGAGGGGGGGTTCCTTGTCT
GTCGGTCGAAGAAGGCCGCAAGTGGAAGCAACCGATGCTTTGGTCATTCAGTCGCAAGCGCCTTG
CTGCCAGTCTGTGCTTGCTGTCATGCTGGCAAAAGCGGGGGTTTCGGCCGGGAACTTACCTACTA
TTGGATTTGAACCAATGACTCTCGCCGTATGAAAGCGATACTCTAACCGCTGAGTCAAGTAGGTC
AAGCTGAGTCAAGTCAGAGAAAATAGGCCTATAAGAGAAAGCCAACCAAAGCGCAACCAGAGTTC
TCCGCGGGGCGGAGCGCTAAGAAAGAGAAAGCGTTATCGCTATAC



Found at i:9121 original size:21 final size:21

Alignment explanation


    Indices: 9081--9121  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       9071 CCTTTGCTTT

                           *     
       9081 CTTTATTACTTATCGCACGTG
          1 CTTTATTACTTATCGAACGTG

                                 
       9102 CTTTATTACTTACTC-AACGT
          1 CTTTATTACTTA-TCGAACGT

       9122 CACTTCCTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   16  0.89
  22    2  0.11

ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44


Consensus pattern (21 bp):   
CTTTATTACTTATCGAACGTG

Left flanking sequence: Indices 8581 -- 9080
GACCAACGGAAACCTAGTGGCATGGGTTGGTTTGGCGCCAGTACAAAAAGAGCGGTTCGGTTGGT
ATGCCGGAATCACTTCGTGCTATTGCTATTAGAGTGGGGAGAGAGATGGAGAAGGGGCTTTTTCT
CTTTCCTCCCACCAAAACAGGGGTAAGCTATGGGCGGGCCCGCAAGCGCCTCACCATTTTCCTCA
AAATGGTATGATGGCTTCCTCCTATGCTCCTGCTGGCTTTTCTTATCCTAAATTCATTGTCTTGT
TGCGGGCGAATCATCGAATCAAATCGGTTGCTGGCTCCTATCCGCCGTTCATCCTGCTGAGCTTT
GATCTCACTATCAAATGAGCTCACTAAGTTCTGCTGCCTGCTGGCTGCCTGGACAGAGGTTTTGG
TGCTACGAGAGAGAAAAAAGAGAGCTCTCTGCTTAGCGCCCTCGCATAGCTAATAGCTTGTTGAA
CCTTCGGAGAGAACCATAGAGCTCCTGCTTAGCGCCCTTTGCTTT


Right flanking sequence: Indices 9122 -- 9621
CACTTCCTAAACCAAAACCGCCTTTCCCAGATCTATGAAAGGTGAAACGTTGAAGGTCCACAACA
GGTAACATAAATGAACAAGTTGATTTTGTATTCGAGTTGCTGAGGGCCGGAGCTCGTATGGATAC
ATTACTTCATTGTTCTATAAGGCGTTGCACTAAGCCCATACTCGGATAGGGTCGCGAAGTGCAAA
GATCCGGTCTTTGACAACCGTCGTAAGGACAACAAAACCTAGACTACTTATGTGTCTTCGACACT
ATAGGCGGGACCAGTTGTAGGATGATCGCCGAGTGGCGTTCTGCTCGATTAGGCGAATGCGAGTG
AGGGATAAGCTTTCCCCGTTCGCTAGGAGGGAAACTCAGGAAGAGTTCGGGCAGAAGAAAGAACA
GCTTGGCGCCCTTGTTCATTCCTTTGATTTAAGCCTTATATTAGTGAAAACCAAGTTGATGAGTT
TCCCAGCTATACGAGTGTGAAAATGCTGCATCGACATCAATCACA


Done.