Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: OM066882
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 19531
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Found at i:13490 original size:20 final size:20
Alignment explanation
Indices: 13465--13510 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
13455 TCCACTGCGT
*
13465 AAGCCGTAGCGTGCGCTTCA
1 AAGCCGTAGCGCGCGCTTCA
*
13485 AAGCCGTAGTGCGCGCTTCA
1 AAGCCGTAGCGCGCGCTTCA
13505 AAGCCG
1 AAGCCG
13511 GAGCTTAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.17
Consensus pattern (20 bp):
AAGCCGTAGCGCGCGCTTCA
Left flanking sequence: Indices 12965 -- 13464
AGCCCGCTTAGAAGTGGATTCGAACCACTGACACAAGGATTTTCAGTCCTTTGCTCTAACCAGCT
GAGCTACCTGAACCACTTTCCTAAAGTCTATTTTATTCATCGAATAGCTGGGTTGGTTTGGCCGC
AGTGGAGGAGCTTGCTCAAGAACCGAGAGCCGGCCAGGGACTGGACGGCCCTCGTTCGGTCAGGT
CTTCTTCGCTATAGACGCCACCAAGAACAAGAAAGAGGCTCTCCGCTCCTAGTCACTAAGTCAAG
TAGTGCTTGTCCTCCGGGGGACTCCACCAAGAGGTTCTTTCTCTCACGTAATTTCGTTTCGCCCG
CCCGTTCCACTTCCGTGCCGGAGGAAATGGGATTCGAACCCATGATACAATCTTCTTGTATGTCG
ATTTAGCAAACCAATGCCTTAAGCCACTCAGCCATACCTCCAAGTTGTTGATCGGAATTGGATGT
GCCGGGTTGGTTGCCCGAAGTCAAATCTGATCCGATCCACTGCGT
Right flanking sequence: Indices 13511 -- 14010
GAGCTTAGAGTTTCCCTCAGCTAGTCTGTAGTTTTGAAGCTAGCGCGCGTACTCTTCTTCTATGA
GCGAGACTCTACCCAGATCTATGGATCTCCCCAGCATCCAAGTCCATCAAAATCCGCCACTCGTT
GGGCGACGCCTTCCTTTCTATGAACACCCCACCGCTGAATGATGAACTTTGCCAGTCTTCACCTC
CGACCCGACCAGGAGAGAGAGAACACACGGTCAAGCCAATCTAAAGATTGCCTTACCTGCCTGAA
TTTCATTCGCTACGCGCCTTCGTCTGGTCGAGAAGGGAGAAAGCCCGGGGAACTGGACCGTGACT
AACCATTACATTACGGAGAAGTCCATTCTCGTCATGATCGATCCACGTCCTACCATAGTGCCCGG
AGAACCAGGCTTGCTTAGCTTACCAAGCTGGCTTACTAAGCTAAGCGCGAAGGCGTCTAAGATTG
CACGAGCTAGCCAGAAGGTAGCGTAGCTTGCTTCTAGAATCTTCT
Done.