Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: OM066879
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 26813
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Found at i:3818 original size:17 final size:18
Alignment explanation
Indices: 3785--3819 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3775 CCCATCCACC
*
3785 CGTCGTCTTTACCTTTCT
1 CGTCATCTTTACCTTTCT
3803 CGTCATCTTT-CCTTTCT
1 CGTCATCTTTACCTTTCT
3820 TGAGGATCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.06, C:0.34, G:0.09, T:0.51
Consensus pattern (18 bp):
CGTCATCTTTACCTTTCT
Left flanking sequence: Indices 3285 -- 3784
TAGATCTGATTTTTTGCATGTTTATCAAAATTTGACTACCATGATAGCTACAGAGTTTTCTGCTC
GCATGTTGTTTTTCAGGTCTGATGCTGGGGGAACTCTCTGCTGCCTTTCGTGACTTTCTGACTAC
TCAGGGGACTCAGCCTCAGCTTTCTTATCCTCGCACTCCGCAACAGAATGGAGTAGCTGAGCGAA
AACATCGTCATATTATAGATTATAGAAACTGCTCGCTCCATGCTCTTTCCCAGTTCAGTTCTTCT
GGGCTGAGGCTATCCTTACCTCAGTCTACCTTATCAATCGTCTTCCCTCTTCTGTCACTGCTGGT
ATGTCCCCTTACCAGCGTCTGTATTGGACTCCTCCCGATTACTCTATAAGGTATTTTTCTTTTTT
ACTTGTTTTTTTATGTCTCCTCTTCTGAACGTACCAAGCTCTCTCCTCGATCAATTAATTGTGTT
TTTGGTGTGGAACACAAAGGGTATCGTTGTTATGACCCATCCACC
Right flanking sequence: Indices 3820 -- 4319
TGAGGATCTGCCCTTTTTTGCCCATTACCGTAAACCTAGTCCTGCGGCCTCCTCCTGATCAAGAG
TATATCACCTTTCTTGATCTATCACCCCGAAAAACTCCCTCACCTACACCAGCATCCCCACCACC
ATCCTCTTCTTCGGCACCAGAGGCTATATCACCTCCACGCATCCTCACCCCGTTTCCATATCACT
ACCAGCGTCGTCTTCCACCATCTCCTGTCTCTGATGCTTTGGTCCGGTCTCTTGATGCTGATCTC
TTGGAGGCTGATTCGACGTGAGACTTCTGAGGTCGCGTACTCCCCGTCGTTATCTACTCCGGGAA
CGACGCCCACCTCAACGACTTAGCCTTGTATCTGCTGACTGTTTTTCTTCAGCGTTTCAGTCCTA
TCTGTCTACAGTGCATTCCTATTCTGATATATCGCCGCAGACGTATCGCGAGGCTTCGTGTATTC
CTCATTGGCAGCAGGCCATGGATAAGGAACTCTCTGCTCTGGATC
Done.