Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: OM066878
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 27358
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Found at i:15003 original size:40 final size:40
Alignment explanation
Indices: 14959--15044 Score: 172
Period size: 40 Copynumber: 2.1 Consensus size: 40
14949 GGGCAGCTAG
14959 AGGATTTCTGCGCCTTGACAGAATTGGGCTTCCTTACATT
1 AGGATTTCTGCGCCTTGACAGAATTGGGCTTCCTTACATT
14999 AGGATTTCTGCGCCTTGACAGAATTGGGCTTCCTTACATT
1 AGGATTTCTGCGCCTTGACAGAATTGGGCTTCCTTACATT
15039 AGGATT
1 AGGATT
15045 GCTGAACGCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (40 bp):
AGGATTTCTGCGCCTTGACAGAATTGGGCTTCCTTACATT
Left flanking sequence: Indices 14459 -- 14958
TTCTGCTTTCACACATATTATATTATAGAACAAATCATTGTTTACTGGAAGAAGCCCAGCCAAGG
TTCTCTAAAGCTTAATATCGACGGGGCAGCAAAGGGCAACCCGGGTCGATCTGGTGGTGGAGGTG
GAGTTCGGGATAGTCAGGGCAATCTGCTCTTTGCTTTCTTTTCCTATTTTGGCATTAGAACCAGT
TTTATGGCGGAGCTGCGAGCATTGGTGACTGGTCTCAGATTATGTCTAGCTCTTGGTTGTAGGCC
TGGCATAGTCGAAATGGACTCCAAAATCATTGTTGAGTTGCTTACCAACAGGTCTCACCCACCTT
GGACAGCTCATCCTTGGTGGCGAGAGGCAATCTCCATCTCAGACCGCTTGCAGGTCAGATTCATC
CACACATATCGAGAAGGGAATTGTTTTGCTGATTCCTTGGCAAATCACGGGGTTATAATGGAGCA
AAACCGGTTAATACTTCAGGAGAATGAGCTACCTCGGGCAGCTAG
Right flanking sequence: Indices 15045 -- 15544
GCTGAACGCCATTGTTATATTACTATTGTGCTGAATTCAAAAAACTCATTCATGTACTCAGTCAT
TTTCATGCAATAAATGCCTCATATTGAAGATAGATCCAGATAGAGATCTAGATCTTTCTATAGAT
AGATCTCCTATTTCACTCAAAAAAAAAGATTCTTTAGAAAGATTCTCCGGATAAAGAAAGATCTA
ATATTTAGAATCTAAATAAAGGCGCATACGTGGGCGGGAAGGGGGCCCCACTACTTCTTCTTTCA
GGGGGGGGGACTAGCCTCATGACTTCCCACTGGGCGAGAGGTGCACCTAACCCACCTACCCACTC
ATCAATCACGGTGTTCAGCTGACTTGCACTGAAAGACCCCTATTGTATAGGAATTCGGCGCCCCA
TCTTTTGACTGTTGTCAACTAATCTCTTCAATCTTCGATTCTACTCTATGTTAGAACATTTCTGT
GAATGCTATTCCGATCTAAGTGGTCCTATTCCGTGTCCCGTGCTA
Done.