Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: OM066876

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 29468
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27


Found at i:1201 original size:12 final size:12

Alignment explanation


    Indices: 1184--1208  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1174 CGACATTTCC

                        
       1184 ATTTATAACAAA
          1 ATTTATAACAAA

                        
       1196 ATTTATAACAAA
          1 ATTTATAACAAA

             
       1208 A
          1 A

       1209 ACAAAAGCCA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32


Consensus pattern (12 bp):   
ATTTATAACAAA

Left flanking sequence: Indices 684 -- 1183
CCAGCGACTTCATCCCAGGGCGGCTTGAGCCAATGCTAAGCCTAAATGCACCAAGCATTGCCATT
GAGCCAGTTTTTGGGGAGTAACCCGGGATACTGCTCTAATCAATAAATTTCTATCTTTTCTTTGG
CCGAGGATACCCAATTAGGGGAGAGCGAGCTTCCTGAACTCCCAACTTCCATTAAAAAAACTGAA
ATGGACAATTCAACCGCTACTTCAACAACATCAATCGATGAAGCTGATACAGAACTTTTCAATCT
TGCACATTGAAGGGGAGGCGTCGGCCTGGCCCATTTTTCGATCTTTATACGAGCTTTGAAGCCCA
TTCAAGCGATTGAAGCAGGTACTAAAAACAATCGGTCTACGAGACTAAGTCCTTAACTCCAGAAG
CAAGAACGGACGGATGCCCGAGGAGTTCTACCGTTGACGACAGCAGCGGGAATGGCTTGTCAAAA
GCAGCTGCTAACGACCACCGAGAAGGCTAATAAAGCGACATTTCC


Right flanking sequence: Indices 1209 -- 1708
ACAAAAGCCATTGCCATTTAAGATCTTTTTCCACCAGGTCGTAATACCACCCCTATACTCCTCTT
TGAACTAAAAAAAGAAAGTGAGTTACAAATTCCCTTCCGGACCTTTCGTTTGAGGAGAGAAGACA
ATGAATGGAATGGTCCGGCAGTCGCTATAGAATATCGACTTAGTCTTAGTGAAGCTAGTCTATTA
ATTAGATCACGCACAGGTGATCTAATTATCTATAGAGAATTAGAGAAATACCAGGCTCAAGCCCA
AGGTGAGAAAGACCAGGGTCGCTTTAGAGCCTTTCTAAAGCGAACGAATGGAACTAAAGGAATGC
TTGCTGTCAGCTTTCAGTCCAATGCATTCTCCCCATATCAAAAAAAAAAGAGGAAAGAAGGGGCT
TTGATTACTCCGGGTGAAGCTCAACTTTCTATTGAGCGAAGTCTGGCTGGATTAGTTTAAATTGA
TGTTGCATTCGAGGCGCGTAGCGTAGTATTCGATTCTTTCTTTCG



Found at i:12107 original size:27 final size:27

Alignment explanation


    Indices: 12076--12130  Score: 92
    Period size: 27  Copynumber: 2.0  Consensus size: 27

      12066 CTGCATCAGA

                                   *   
      12076 GGTCGAGGAAGTAGCCGACTCGACTCC
          1 GGTCGAGGAAGTAGCCGACTCGAATCC

                              *        
      12103 GGTCGAGGAAGTAGCCGAGTCGAATCC
          1 GGTCGAGGAAGTAGCCGACTCGAATCC

             
      12130 G
          1 G

      12131 CAGTTTTGGG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.24, C:0.25, G:0.36, T:0.15


Consensus pattern (27 bp):   
GGTCGAGGAAGTAGCCGACTCGAATCC

Left flanking sequence: Indices 11576 -- 12075
GCACAAGAAGGATTGAGTGAGAAGGGACACCACTTTTTCGTTGGAATAAAAAAAAGCGATGCAAG
AAAAAACAAAGCCTCTCGGATTCTAAAGGAGGCCTTTCCAGAGTTCGAAGGAGCACAAATGAATG
TGTCTTTTAATCGACTTCGTAGATTTCTCTATTCATTTCTATTTGTGGCCATTATGGTTTTGGTT
ATGTATCTTATTTGTCTGTGTATGGGGTCAATCAACTCTTTTTTTGTCCTACTTTCAAAGGCTGG
GGTCTCTCTAGGAGGTCGAGCCCTATCGTTAGCTCTATGTAAGGGCTTGGGCTGCTCCGGCGGTC
TGGCCTTAGCCATTGGTTTTGCTGCTAGGGCCCTCTTCGCTAGCGAGGCACCTGCGGCCCTACCT
CTATTTATGAATGAAGACGGGAGTGCTGGCGCGGTCGATGCGTCCACAAGTGGGGCCTCAGACGA
GAGCTCAAGCTCTTCCTCAGAAGAAGTTTCAGTTTCTGCATCAGA


Right flanking sequence: Indices 12131 -- 12630
CAGTTTTGGGGGAAATGGGAAGAACCAGAGATAGAACTCTATGATCGGGCAAAATCCCTCCTCCT
TCGGGAAGAAATAGACACGGAATACTTTAACGATATTCCTATAAATATGGGCAAGTTTGCCGACC
TCGGCGAGGTAGCATACCAAGCTAATCTCGAATTTGAGGAATTCGAAGTCGGGATGGTAGAAAAG
CGGAGCGAAATAAAGGATCGGCTCATCGATCTCTTTTCGAATGACAACGACCCCGAAGTGGTCCA
ATATAGGCAAGACAACCCCAACCCCAACCCGAGGCTTCAAAGGGATTTTCGCGCTTTCGATGAAG
AAGCGCTTTCAGGCCCCATTGAAACCTGGGATCGTAAAGCCCCAGGCTTTCGGGAGAGGGCCGAA
AATCATATAGATTCATATCATAATGCCCTTTTTAGGAAGGGAAATAATTCCATTACATACATACA
ATTCAAAAAAGAGGTTTTCAATAAATAGTCCCGTATAGATCTCAA


Done.