Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: OM066875
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 32048
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Found at i:9495 original size:17 final size:19
Alignment explanation
Indices: 9453--9488 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9443 AGCTACCCCC
9453 CGCT-TCTTTCGTTGAGCT
1 CGCTGTCTTTCGTTGAGCT
9471 CGCTGTCTTTCGTT-AGCT
1 CGCTGTCTTTCGTTGAGCT
9489 TCTGTCTCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.06, C:0.28, G:0.22, T:0.44
Consensus pattern (19 bp):
CGCTGTCTTTCGTTGAGCT
Left flanking sequence: Indices 8953 -- 9452
ATAAGTTTTGGAATCAGAAGAGTTTTTTTTGGGGCAGTGGCACAAGAACCAGAACCTGAGGGTGT
TGGCTTCTTTCAAGTCGAAGGGCTAGTCGAAGGCGAAGGTCAATGGTATGTCTTGTCACGTCATG
GCCAGGGCTCATTCCTCTTTTACATATTGATCCTTTCCAGCTCTAGTTGTACCAGCCTGTGCTTC
GAAAACTCCTTCACTCAGAAAGAGCCTGAAAACGAGAGTTTCTGGGCCTCGGAGACACAAGGGCG
TAGCGCGTTGGACATATGAAATCCATGTTGCTTGAAGCTCTATTTCGATATCTTAGTGAATTGTT
TGCTTTCCGCCTCTTTCGACTTCCAATCACACCAAAGATCAAAGAAGATTTTAACTCCCCTTGTT
AGGCTAGACTGCCTGTCTGATCTGAACTGCGTCACCGAGCTTGGGTTTCATGGAGTAGCTAAGGC
TGAGCGGTAAGATTCCCTTTCCGCGTTAATCTATAAGCTACCCCC
Right flanking sequence: Indices 9489 -- 9988
TCTGTCTCGGATTACACTCGAGTTTATGCGTTCACTAACACGACGACCCGCAGCTTCTGCTTCCG
CTTCCCCTTTATATCGTAAGAGAAAGCGTTGTCGCTTCAGCCCTTTCCGAGGCCATAGAACACAT
TTCTTTCGGTACACGCGCACACACGCATACACGCATAAGGCCTTCTTCCCTTAAACCAAGCTACC
AAGTAGTTTAGTTTGGTCCGAACCTAGCTTATTAACATTCTCAAGAATACCTTGAAGAGTGCCTA
AAGAGGCGCTTGCGACACAACCTTGATGCCGAATATAAGGGCTGCTTTAGTGACCAGTTGAGCCG
TCAATCTCCGCTCTCTTTGACCTGCAAGCCGGAAAGGAAAGAATGGCTTTCGTCGAGAAGTTTGC
CAATGAAAGTCATGATAGCGAGCTCTACTATACCCATATCCTTTTTCGTTAGTTGTCAAGCAAGC
AAGAATCCCGCCTTTACTTGAACAATGGGGCCATAGATAAGTCCT
Done.