Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_072135
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 345604
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:51 original size:36 final size:36
Alignment explanation
Indices: 1--192 Score: 368
Period size: 36 Copynumber: 5.4 Consensus size: 36
*
1 TAACAT-GAACCTCTTTACTTACAGTCGAGCTCTAT
1 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
36 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
1 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
72 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
1 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
108 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
1 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
144 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
1 TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
180 TAACATAGACCCT
1 TAACATAGACCCT
193 ATAGCTTAGC
Statistics
Matches: 155, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
35 6 0.04
36 149 0.96
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (36 bp):
TAACATAGACCCTCTTTACTTACAGTCGAGCTCTAT
Left flanking sequence: None
Right flanking sequence: Indices 193 -- 692
ATAGCTTAGCTCGAGTAACTACGTGCCTTTAGCTCTAGTTCAGTTACACTTATTAACACGAAGGC
TAGTGCTAGTTGAGATCAGGGACGGACTCTAACTGCCCCGCTGGCCGGAGGGAAAAAGAACTCCA
TAGATTGAGTCAATTTACACAAAAAGAAGGAATATTGGCCTATTGATCTTGACCAGCCTCGACAG
GTTCCACAGCATTTGTAATTAATTTCAGTTGCAGAAGTATGGTAGAAGTTTGTGCAACTGCAGGC
TCGGCTTAGTAGGTAGCAGTCCCCTAGGTCAGACTTTGAGTTTGATTTATTTCCATCTTAGAGGT
ACGTAGTTCTCGACTGTAAAGGAGAGGATGGAAGACTTAGCAACTTAGCAATTACGTAAGCTTTT
GAATTACTTGTAATTCTTACGGCTTTGGAATACCATATAGTTGCAAGCAAGAGCAGAGCGAAGGT
TCGGAGATCTCGAGCGAAGCCAGGAAACAGAAAGTCTGATTATTA
Found at i:5672 original size:53 final size:56
Alignment explanation
Indices: 5606--5717 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 56
5596 GTGGCAAAGG
5606 ATATGAAGTTCT-A-A-TATCTGCACTAAGAAGTGATTACGACTTGTTGTAGATGA
1 ATATGAAGTTCTAATATTATCTGCACTAAGAAGTGATTACGACTTGTTGTAGATGA
* *
5659 ATATGAAGTTCTAATATTTATTTGCATTAAGAAGTGATTACGACTTGTTGTAGATGA
1 ATATGAAGTTCTAATA-TTATCTGCACTAAGAAGTGATTACGACTTGTTGTAGATGA
5716 AT
1 AT
5718 TAGTGTGTCT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
53 12 0.23
54 1 0.02
55 1 0.02
57 39 0.74
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.38
Consensus pattern (56 bp):
ATATGAAGTTCTAATATTATCTGCACTAAGAAGTGATTACGACTTGTTGTAGATGA
Left flanking sequence: Indices 5106 -- 5605
GTTTGCATTCACTACTAGAAAAGGTGTCAAAAGTGGAAAGTAGAAATAAGCCATATGAAGAGACT
GATGAAGATAGAGATGAAGATAAGCCGAACTCCGCACATCATGCAGATGAACCCCAGCCATGATA
TGACAGAAGAGAGCGAGCACATCCCAGTTGCTGCTGAAAATGGCAAAATCCCATATCAGGTATGT
AATGGCTTGGTCTTGTTCAATATTGGTTCTTTAATTGTACTCACAAGTTATGCTTCTTAATCAAT
CTTTTTTTGCATATTGGCATAGGTAGGACTGGACAAGACCACTTTCATTTGTATCGGAGGTTGGG
AATGACTATTTGATTCTGACTACGCCGGGTGACTTTATTGCAACTTAGATTAATTGATGTTTCAT
GCTTAATCCACGTTCTTTTTTGTAGGGGAAGGATATTCTTAAGAAGCTGTTAGTGTTGAATGGGC
TGAGAAGTGTGTAAGCCTTACTTTAAGGTGTCCTTGTGGCAAAGG
Right flanking sequence: Indices 5718 -- 6217
TAGTGTGTCTGATTCCCGGTTGTCACTAGAATCAATGTACATCACTTACATTCAGTTATGTAAAT
AAAATGTTGTGTACTATCTAAGTGAAGAGTTCGCAGCTTGTGGAGGCGGAGGAAAGAGCACCAGC
AGCAGAGCTAGAGAGTCTCAGCCTTGCCTGTTATGTTAGGGTGCCTGCCAATGGGAATTGCTTGC
ATGGGGTGCATTGTAAAGGCCCAAAGGCATCAAAGGCGCATGATTTTCTTATCTTAATGAATTCA
ACGCCATTGAGCGTGTGAGAGAGGCAGGTAGCTCACCCACAAGATGCTCGGTCAACATCTCTCTT
TCTCTCTCTTTGTTGACTGCTTTACTCTTTGTGTGCTTAATGCATATGTTGGGTAGGTTTCTGCT
TTGTTCACACAAAACCACCTCACCTTACTTAAGAGGCAGAGTGGCTGGGTTAGATCCCGTTGCAG
ATGTCAAGGTTGTTTCACGTGCGGGGTCTCAGTCTTTCTTGAGCC
Found at i:16117 original size:29 final size:32
Alignment explanation
Indices: 16084--16152 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
16074 GACCGGTAGA
*
16084 GAGAGGTATG-AAG-TA-ACTCGACTGATAAG
1 GAGAGGTATGAAAGCGATACTCGACTGATAAG
* *
16113 GAGAGGGATGAAAGCGATGCTCGACTGATAAG
1 GAGAGGTATGAAAGCGATACTCGACTGATAAG
16145 GAGAGGTA
1 GAGAGGTA
16153 GGTAAAGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 9 0.27
30 3 0.09
31 1 0.03
32 20 0.61
ACGTcount: A:0.36, C:0.10, G:0.36, T:0.17
Consensus pattern (32 bp):
GAGAGGTATGAAAGCGATACTCGACTGATAAG
Left flanking sequence: Indices 15584 -- 16083
ACAGTAGTGCCCTATTTATATGGGGTCGTAGCGCCGGTTACCGAGGGTTTTGATCCTTGAGGAGC
TAGCTAAATTGCAATTGCAGATTCTGTTAGTGTTAAGTGTAAGCAATGATTTACAGTCCCTTCGA
TTATCGCCTCCCAGCCGGAAGCCTCTAGCTCGAAATCCGATCCGCGTCTCCATCTAGTGAAAGTT
CCACCTCTACTCCCGAAACCGGTATTGAGAGTGCTTCCAGCCCACTTGAGCAATTTGAGATTCTC
CCGTTAATTCCTATCTTCATAGGAGTGATAAGGCAGTTTTTTTGGGGGAGTGATCTTATATCAAT
TGAATAAGAAAGACTTTCTACGCGACTCTCGCCTCTATCTAAGTAAGAGGAGGTTGAAGCTTATA
GTAAGTAGCCTAAGCTTTAAGAGCCTCCAATCATGCTACTTCAGCTATATGCTTAACACATGCAA
GTCGACCCGTCGTTTAGTTAGGAACGAAGATAGTAGACCGGTAGA
Right flanking sequence: Indices 16153 -- 16652
GGTAAAGCAGCCTTAACTAGTCAAAAGCAATTGTAGAAATTACGTACGTAGGTGATTTGAACCAC
TTTCGTTGTAGCGCTTCCATCTCGTGGTAGCGAAAGACGATTCCAACTCCTAAACCGCTGAGTGA
AGGGCAACGATCTCTAATTACCTATGACGAGATGACCGAGGTTGCGCGCGCCGCTCCGTCAAAGC
TTTATTCCAGGTTCAACTCCCTGGCGTCGAGATCTTTTTCGTTTGTGAATCTTTTTCCCATGCAT
AATTTGGTCAACAACCAAGCACATCTAACTTTCTTTCTTCACTACTCCGGACTCTCTTTCTGTCT
TGTCTGGAGGTAATTTTTTTGTCTCAATCAATCACTATGTTTCCACTTCCACTCAATTTTCATTA
CGAAGATGTATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATGGAAGTTCCTG
GATCGTGTGAAATAAGATTAGTACCTAAGGCACCCTATGATTTAA
Found at i:44369 original size:22 final size:22
Alignment explanation
Indices: 44341--44401 Score: 122
Period size: 22 Copynumber: 2.8 Consensus size: 22
44331 GTTAAAGAGG
44341 TTCGATGTAATTGATTTCGCCA
1 TTCGATGTAATTGATTTCGCCA
44363 TTCGATGTAATTGATTTCGCCA
1 TTCGATGTAATTGATTTCGCCA
44385 TTCGATGTAATTGATTT
1 TTCGATGTAATTGATTT
44402 GAGGAAGAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (22 bp):
TTCGATGTAATTGATTTCGCCA
Left flanking sequence: Indices 43841 -- 44340
ATCTTCAACCCTACCGCCAGGACGTTCATCTTAGGGAATCCTCTCCTTATTCTATAGGTCGAGTG
GCTTTCGCTTAGCAACCTTTACCATAAGCGAAATCTTAATTGGTGATCTCCGTTAAATTAAGGGC
ATTCGAAAAAGACTCTAGGATCTTATACTGTCTTGAATCGAGGATTTATTTCCTTCCCTCCCTCC
AGCTCGCTCTCTAGTTCTCTTCCTTCGGCTCTCTTTTAAGGTATTCCACTGGTGTCTATTCACCC
ATATCTTAAAAAGTATAACTCGGGGTTTAAGAACAACGCTCCGAAACGAGCCCTAGAAGAGGATC
CTATCCGCTCATGGAAGCTAGTCACACAGCTCTAAAAACTAGAACTCAAGAAAGAATGAATAACC
GCTCCAACTCCATAACTCACTAACCACAGAAACAGAGAGAAGCAACTCGGAACGGCAAGTTCGAA
CTGAAAGAGCTACTGAACTAACTAAACAATAAGAAGTTAAAGAGG
Right flanking sequence: Indices 44402 -- 44901
GAGGAAGAGTTGTTTGCAGATAGTCTTCTGAACTACGTACACCCAAGTCTTCCACTCGTCCGCGC
TTCCCCTAGTGAGTTGAGTGAGGGTTGATAAAAATTATCAGAATTCTATCGAATGATATTAGTAC
GCCTGGTGAACCATGCCTGGCCCTTTTGTATAGTATAAAAAAGATAGATAATCCCCTCACCTCAA
TTCTTTCTTTTACTTTGAAAGGTGAGGACGCAGAACTTCCCTTTTGGCTTTCTTCCGCGGACTCT
GACTGAGTGTGAATGACCGACTTGGCATTCTCCGCCGGCCTCCTTGCTACGTTGAAAGAACACAG
GGAGTAGAGCGGCCCGTCTGAGTACATAAGATATTGTTTACCAGTGCAAGGTTGTTGGGGAGGAT
AGGCAGATCCGGATAAACGAAAGGGGCTTGTCCTCACTTACTTGAGCAAGGAATGAAGTACCACT
CCTCAGTCAACCTAGGACCCCTGCCGGGGGCTATATTACGTGCCA
Found at i:57311 original size:36 final size:36
Alignment explanation
Indices: 57271--57486 Score: 432
Period size: 36 Copynumber: 6.0 Consensus size: 36
57261 GCTAAGCTAT
57271 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
1 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
57307 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
1 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
57343 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
1 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
57379 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
1 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
57415 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
1 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
57451 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
1 AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
57487 GAGAGGAAGA
Statistics
Matches: 180, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 180 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (36 bp):
AGGGTCTATGTTAATAGAGCTCGACTGTAAGTAAAG
Left flanking sequence: Indices 56771 -- 57270
TAATAATCAGACTTTCTGTTTCCTGGCTTCGCTCGAGATCTCCGAACCTTCGCTCTGCTCTTGCT
TGCAACTATATGGTATTCCAAAGCCGTAAGAATTACAAGTAATTCAAAAGCTTACGTAATTGCTA
AGTTGCTAAGTCTTCCATCCTCTCCTTTACAGTCGAGAACTACGTACCTCTAAGATGGAAATAAA
TCAAACTCAAAGTCTGACCTAGGGGACTGCTACCTACTAAGCCGAGCCTGCAGTTGCACAAACTT
CTACCATACTTCTGCAACTGAAATTAATTACAAATGCTGTGGAACCTGTCGAGGCTGGTCAAGAT
CAATAGGCCAATATTCCTTCTTTTTGTGTAAATTGACTCAATCTATGGAGTTCTTTTTCCCTCCG
GCCAGCGGGGCAGTTAGAGTCCGTCCCTGATCTCAACTAGCACTAGCCTTCGTGTTAATAAGTGT
AACTGAACTAGAGCTAAAGGCACGTAGTTACTCGAGCTAAGCTAT
Right flanking sequence: Indices 57487 -- 57986
GAGAGGAAGATACTTTATCTCCAGCTCAATCACCAGCGCGTAAATAGAAGATATTCCGCTTCTAT
GCTCGATTTCTATTTCTTGTTTACTTCGTTCCACTCGCTTGTGAGCTCGTTTGGGAAGCTAGATC
ATTCAACATGCTTTCTTAGCTGGAAATAGAATGATACTGATTATCTTATTATTACATTACAGCTT
AAGTGCATTTTCTATATAAGATATAATCTCATGCATGCTTGGAAGTTAGGTTACTCTAAAGGATT
TTCTTAGGTGCTAGAAGCTGCTTGAGGACTTGCTAACCTTACTCTTCCTTATCCAGTGAAAGATT
CATTTTTTGAGTTAGATCGAGTGCCGAGAAGAGGTGCGGTGCGGCTAACTAGTATGAGCTCATAC
CCGCCTTTCCCTGCAGCTTGAACGTGGCACTAAAGCTGAGCTCATGAAAGAGACTTCAGGTTATA
AAAATCTTTCCGGCTAGCTCATTTCCCGATTCGAGGACTTATTAC
Found at i:59416 original size:30 final size:30
Alignment explanation
Indices: 59380--59481 Score: 89
Period size: 30 Copynumber: 3.4 Consensus size: 30
59370 CGGGTAGCCC
59380 CGGAGGTTGAGGAGGAGTTTCGGGCTGCTG
1 CGGAGGTTGAGGAGGAGTTTCGGGCTGCTG
* * * * * ** * **
59410 CAGAGGTCT-TGCAAGACTTAAGGGCAGCCC
1 CGGAGGT-TGAGGAGGAGTTTCGGGCTGCTG
*
59440 CGGGGGTTGAGGAGGAGTTTCGGGCTGCTG
1 CGGAGGTTGAGGAGGAGTTTCGGGCTGCTG
59470 CGGAGGTTGAGG
1 CGGAGGTTGAGG
59482 TGCCCCCCGC
Statistics
Matches: 48, Mismatches: 22, Indels: 4
0.65 0.30 0.05
Matches are distributed among these distances:
29 1 0.02
30 46 0.96
31 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.46, T:0.21
Consensus pattern (30 bp):
CGGAGGTTGAGGAGGAGTTTCGGGCTGCTG
Left flanking sequence: Indices 58880 -- 59379
TCGTAACTCTCTCTATATTAGGTGTCGGCATCACACATATCATATAGATTTTGTGTAGTGAGTGA
GATTTCCCAAACAAAACATTAGGAAAGGAGTTAAAAAAAGAATAGAGGCCATCTGACTTGGTTAA
GTCATGTTAGTTGTGGTTAACAGCAGAACCAAAGCAGAATGACTGACCCTGCCTCCAAAGAGGAA
GGTGCATTCCTTGTTATATCCCATAGCTTGCTGAGACCGGGTCCCCTCAGATATGACGATAGGTA
CGTTCCTGCCAAACATGTTAATAATCTAGGTTTCCCTATGGGCATATCCCTTAAAATAGACAATC
ACAAAAAAGCAATAAAATAGCTCGACTGTAATCCGAGTAACGAAGACTGATAAGCATAAGGATTG
AGAATTCATGGGATTGATCAGGTCTCAAGACTGGGACGTCGCTTTTAGCGATGGGTTAGGAGGTG
TGGAGGGACCTCCTTCACCGCCTGTTGTGGGCATTCGGGTAGCCC
Right flanking sequence: Indices 59482 -- 59981
TGCCCCCCGCAGAGCCTTTTATTCCTTATTTGAACCCCCCGTACCCAGCCTCCAAAGGCAGGAAG
AGCTGTACGAGCGGCTCCTGCTTAATCGCTGGGGCGAAACCCCAAACGGGGTTAACGAGACCGTA
GCCGTGCAATGTTCGATCGAAAGTCTCATGGAAGCCAGCCGGCTTGGTTCATAGCGGCTTCAACC
CCGAGAGTGTTTACCGGAACCGCCATAGAATACGGGGATTCTTATTCTACCCACAAGGCCGGGCC
TTGTCCTACAGGCAGTATCGTACCCACCTCCGTCAGATATACAGGTTAGGCACCCGGGACACACG
GGCCTTCCAACGTATTATGACGGCGGTTAGAAACTATGATCTATTCCTATAGGAATAGATCATAG
TAGAGGTGGATAGCGTGGGTGGGGGCGGGGCAAGGCAAGAAAGGGGGGCAACCTGCCTGTGAGGT
TTTTGACTCAGTGCTACATGCGGGGAAAATGAAAACTGAATTCGT
Found at i:97710 original size:16 final size:16
Alignment explanation
Indices: 97689--97720 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97679 CCCTTTCTTT
97689 CTTGTTATTAGTAAAG
1 CTTGTTATTAGTAAAG
97705 CTTGTTATTAGTAAAG
1 CTTGTTATTAGTAAAG
97721 GGCTTTTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (16 bp):
CTTGTTATTAGTAAAG
Left flanking sequence: Indices 97189 -- 97688
GTTCGTCCTTTCCGCCCCCTAGCCAAGCCACTTGAGACGGGTTTTGCGCTGCGCAATGTTGCATT
TGATTTTTGAATCACTGTATGTAATGCGATTGAAGCTATTAGAGAATCTCGTAGCGATTGGTACT
GTACTGTGTGAGAAGAAATACTGGTCGCTAAGTGGTTTAGCGGGCGACAGTTAGAGTTGGTCGTT
GTTGTGTGGGTTCGAATCCCATTTCCTCCGGCACGGAAGTGGAACGGGCGGGCGAAATTACGTGA
GAGAAAGAACCTCTTGGTGTTGGTGGAGTCCCCCGGAGGACAGAATAGCACTACTTAGTGAGCGG
AGAGCCCGTTGCGCGTTGTTTTGACCGGCCTATCTTCTTTTTATAAGCAAGCTCCCTCCGGCAGT
CCCTGGGCTGGGCGGCTCTCGGTTCTTGAGCATGTTGGGAGAGGGAGGAGATTAGGCGGCAGTTG
AAAGAGCTGCTCGAAAGCTTGACGAACGAAAAAAACCCTTTCTTT
Right flanking sequence: Indices 97721 -- 98220
GGCTTTTCCCTGACTAGTCAAGTGGTAAGTAAGGTAGGGCGCTATTCGATGAAGAAAACATACTT
TAGGAAAGTGGTTCAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAATCCTTGTGTCAGTGGT
TCGAATCCACTTCTAAGCGGGCTTTGGGTCCAAAGGACAGGTAGCCGAGCCGGGTTTTCTTAAAT
TAAAGTTAATTAAAGAGGAAGCCAAAATCAAATGTGAGCGCTCCTGCACTACACTATAAGGCTTT
TTGGCGTCGCCCTATCTTGTCTTGCTGGAGTGGAGGCAGTCTAAAAAAAGCGGTTGATTAGGTTC
TCGCGTCCCTATGCCCAAAAAAAAGGATGGGCGAGTTCGGTTCGAGTGTTCATCGATCGGGTGGA
TCTATATGCTGAGGGGGTGAGACGAGGTGTAGCGCAGTCTGGTCAGCGCATCTGTTTTGGGTACA
GAGGGCCATAGGTTCGAATCCTGTCACCTTGATGTGATGGGCTGA
Found at i:135050 original size:27 final size:27
Alignment explanation
Indices: 135018--135071 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
135008 AACCATAGCA
135018 TCTGTATCACTTCTTTACTTGGCTTAT
1 TCTGTATCACTTCTTTACTTGGCTTAT
135045 TCTGTATCACTTCTTTACTTGGCTTAT
1 TCTGTATCACTTCTTTACTTGGCTTAT
135072 CTAGTAGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.22, G:0.11, T:0.52
Consensus pattern (27 bp):
TCTGTATCACTTCTTTACTTGGCTTAT
Left flanking sequence: Indices 134518 -- 135017
CCACAGAATCCGATGCAGTTAGCGAGAGTCGTGGTAGTTCAGTTCGAAAGGCAGTTCAGTCATTT
TAGGGTAGAAATCCTAAAAAAGGTATGCCCTACCCTTCTTGCCATTTCCTGCACTAAGCCAAGTT
AGCTCATCTTAGGGTTTTCTTTCTTATTAAGAAAGGCTTAAGTTCTTCCTTTATTTTATTAAGGT
AAGGTCCGAGAGTAAGATGGCTATCTTTTCAGCTCTTCTTACTATGCTTTCCGTGGTAGCAAGGC
TTATATCAAACCAGACTAGTTACAGGTGGTTTAGTAAGGGGTTTAGCTAAAGACGTAACAGCGGG
GCTACTAGATGGGAAAGATATGCCACACCGCTTAAAACTAGGAGTCTTCCCGACTGTGGGAGCCG
AGGAGATTGATTGGACTTTATACCGTACCTTAACTCAGTCTTCCGCGATTCTCTAAAGCTTAAAA
ATAGGGAGGAATTTACTTCTGTAAAAAGGAGAGAAAACCATAGCA
Right flanking sequence: Indices 135072 -- 135571
CTAGTAGACTGGGGTTTAGCTTTAGCAAGTACTACTCTAACTACTCCAGGATAGTATAACCGATG
ATATGATGTTCTTTTCGCGGTTTGAAAGGTGACGGAGCAGAGAAGCACAGACAGAGTTCTATTCC
TAATCTCTCAAGTCCCCCAACGAGCACAGTAAGAAGAAAAGCCTTTGGACAACTCGATAGGAAGA
AGAGGAGAAATCAACTGTCATTGTAGTTCTAACCGCTGTCAGAAGACGTGAAGTGAGGGCGTGGT
TCAAGTCACATCGTATGCTCGTCTTCATAAAGGTTTGAGTTAGTTGCGAGTTCATTTATAGAGCA
AGAGTACAGAAAGCTGAGGCCAAGAGATCAGATCATAAAGGGCGGCTAATGTAAATCGGGGTAGA
GGCAACCTCTAAATAATGGAAGTTCCTGGACTGTGAAGGTCAAATAGATTCGTCAAGTTTTCTTT
TAATAAGAGAATTTTATTATTACATACCTCAACCTGGATAGAAAA
Found at i:137054 original size:27 final size:27
Alignment explanation
Indices: 137016--137072 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
137006 ACTCCCAGTC
137016 ATTCTCAATCCACGACGACTATTAACG
1 ATTCTCAATCCACGACGACTATTAACG
137043 ATTCTCAATCCACGACGACTATTAACG
1 ATTCTCAATCCACGACGACTATTAACG
137070 ATT
1 ATT
137073 ATAGTCTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (27 bp):
ATTCTCAATCCACGACGACTATTAACG
Left flanking sequence: Indices 136516 -- 137015
GCCTTCCTTCACTTACTTACTTTACTACCTTAGAAAGGTAGAAGCTTAACTCATACGAGCCTCCT
TGCATTGTCGCTATACTATTTTCTCGCTGTCGTGGAAGAATAGGGTTCGAGTCCCACCACGAATC
ACGAGGGCGGAGAATTTCTTATATAAAGATAACGCTCTTGAAGCCGGGAATCGTCTTGCGATAAT
GAGTTATCATATAAATTTATGACTCATTCTCTTTGATTGCTTTTAGTAGCCCTTTTTCCTTATCC
TTAGTTTTAAGCTCTTCAATCCTTTCGTTTGTGAATCTTTTTCCCATGCATAATTTGGTCAACAA
CCAAGCACATCTAACTTTCTTTCTTCACTACTCCGGACTCTCTTTCTGTCTTGTCTGGAGGTAAT
TTTTTTGTCTCAATCAATCACTATGTTTCCACTTCCTCAAATCCGACGACTCTTTTTTTTTGATG
AAGAAAGTCTTAATTCGGGTTCCAGTGATACTCGAACTCCCAGTC
Right flanking sequence: Indices 137073 -- 137572
ATAGTCTTCAATCGTCCGGTACTCAAGGTTCTTCTGATGGTATTTTTGAGGACCATCCCGGTCTT
AACCCCTCTAGTGAACGTGTAGTAGAGCTTCAATCTGATATACACGATAAATTAGGGGAGTTGAT
GATTAACAAGGGTCCCGACGATGTTCTGGCTGCGGCCGAATTACATGCGGAAAGCGGCGATATCG
GGTTTCTTCAGCACCTTTTAGATGATTTGAAGGCAGGGGGAATTGGGAGTGAAGCCTATAGGGAG
GCCCTAAATTCTTTGGTGACTAAAGCTGATAGTGATGTAGCGGGACCATTTCAATTAGGATTTCA
AGACGCAGCAACACCTATGATGCAAGGAATAATAGACTTACATAACGATATCTTTTTTTTCCTGC
TTCTTATTGGATTTGGCGTATCATGGATCTTGGGTATCGCTTTATGGTATTTCCACTTTCAAAAA
AATCCAATCCCGCAAAGGATTGTTCATGGAACAACTATCGAGATT
Found at i:151252 original size:25 final size:25
Alignment explanation
Indices: 151218--151267 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
151208 TGATTTCCGA
151218 TTGATGAACAAGAAGGAACGAAGTG
1 TTGATGAACAAGAAGGAACGAAGTG
151243 TTGATGAACAAGAAGGAACGAAGTG
1 TTGATGAACAAGAAGGAACGAAGTG
151268 CTCGACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.32, T:0.16
Consensus pattern (25 bp):
TTGATGAACAAGAAGGAACGAAGTG
Left flanking sequence: Indices 150718 -- 151217
ACTTGAACGACCGGTTGTTGAGTCTTATTCCCCCATATGATCTGAGAAAGCCTCCCAGATAGGCA
GTTTGCTCCCCAGTGTAGGTAGGGGTGAACCTGTCAAGAACAATAGTTTGTAACGCGCTTAAGGT
AAGGCCGGCCTCACCATTTCCGTGAGAGATCCGATCTCAGTTGTTTTCAACTTAATCTCCCTCTC
AATCGGTAGGGCTCTTGGGGGAAAGAGGATCCTGGTTGCTTTACCAACCCGACGGATCGTAACCT
TAAGGGCGACCCCCAACCAAGGTTTGCCCGCCCCCCCTATTTCTTTTATTCGTCGGTGTCGGAAA
CTTAGAGCGTTCACGCTCACTCACATAATCTTTTTTCATTTCTTCACCGGGCTTTTACCATGTCT
CCCGAACAATTTCAGTACATATGGCGCAAGACGATTCCACATATCGAGGTCGGAATGGGATCGGG
TGTTTTCACGTCTCACCGTAGTGCCCGGTTTGTCTTGATTTCCGA
Right flanking sequence: Indices 151268 -- 151767
CTCGACCGGAAGGGAAAGGAAAATGGAACTCTTTTCTTTTTTGACTCGCCCCCGGTCTCCTTTGG
ACCCAAAGCCCGCATTCCAGCAAGCTAGCCCCGTAGGTTGGGGGGGCATTTCCATCGCGAAGGAT
TCCATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCAC
CGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGG
TGATCATTGGTCGGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAAGG
CCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGTAGG
CGAGTTGCAGCCTACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGC
TTCCCATTGTAATTGCCATTGTAGCACGTGTGTCGCCCAGGGCAT
Found at i:189620 original size:12 final size:12
Alignment explanation
Indices: 189603--189627 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
189593 TTGGTTGTTA
189603 ATTTATAGCAGC
1 ATTTATAGCAGC
189615 ATTTATAGCAGC
1 ATTTATAGCAGC
189627 A
1 A
189628 CCGAGCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (12 bp):
ATTTATAGCAGC
Left flanking sequence: Indices 189103 -- 189602
GAGGAAATTTTTCTAAGATTCATTGCTCGATTTTGCATGCTCTGCTCCCAAAATGCAGAGAGACT
TTCGAGGGCAGATCCGGGTTGGTCCGGGGAGAGGCGGGCTAGGCTAAGTGAAAGAAAAAAAAGAA
TATAAATATAAATGGAGCTATGTCGACTTACGTACGTCTCGTTGACCAAACGATCAGGTATACCA
CGCCACGTATCATCCCCTCTTTCTATAGAGGAGAGATAAAGAAAAAGAAAAGAGATAGCGATCGT
GCCGTAAGACCTTGTTCGTTTCTACTTGACGTTATTTTCCTCGGTTTTTTTATTTGACATGACAT
TAAGGCCTTTAGTTTAAGTAGGTTTGGGCTAGGTCGTTGCGCTCCTGCCACGTCTTGGCAAAGTA
GGCTGATGGGCAAGCCTCCTCCTGCCGCAACGGTGTGGGGCGTCAGAGGGCTGTTGCCCCGTCGC
CAACTCGAAGGGGCTGAAGTTCGACGCAGAGCTTTTTGGTTGTTA
Right flanking sequence: Indices 189628 -- 190127
CCGAGCAACATCCAACAGCTCCTGTCCTTCTGGTTGGTTTGCTTGCACTAAAGTGCCTTAAGTAG
CCCTCGAGGAGTCCGTTTATATCCGTCTGAGCTTTCAAAGATATACCGACCATAGGTATCTTACT
TACCATCAGATACCGACAGTCGTCTTCTAACATTACCGACCTTAAAATATCGGGTTTTCATCATC
AGAAACAACCCCTTTTACGAGACCTCTTGCATTACCATAACGAAAAAAAAAGAGATAAATTGCTC
TTGTGACTCGGAATGAACCTTTCTCGGTGGAAGAAAGGAATAGCGATGGATTCCTATGAAGCATT
CAGGAACAAGAAGATTCAATCGGACGACGAATTCATACGTGGTCCAAGGAAAGAAAAGGTCCGCT
TCCACGATTTCATCTATATCGAATCTGAATATCAGAATAGCTTATATAGTCATGATTCAATTCAG
GTCCACTGACTTTTGATTGATTTCTCTTCGGATCTGATTGGAACA
Found at i:217476 original size:15 final size:15
Alignment explanation
Indices: 217456--217485 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
217446 GATCATGTTG
217456 TCTGACGTCCTTCCT
1 TCTGACGTCCTTCCT
217471 TCTGACGTCCTTCCT
1 TCTGACGTCCTTCCT
217486 GATGATACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.40, G:0.13, T:0.40
Consensus pattern (15 bp):
TCTGACGTCCTTCCT
Left flanking sequence: Indices 216956 -- 217455
AGTTGCTATATGGAAAAGCTTTGTTCTACCCCTTGTTATGTGTCTGAGGTCATCTGCCTCCATTT
GCGTGGGTTTTGGAAAGCAGACTTTTGATCCTTCATTTTTAAGGGACTGATTCTACTGTTGAATA
TTAGGATCTTCCAGTGATAAAGAGGAGCCCTCGTGTCCCTTCCTTCATCAGTCTTTCTCATGTTC
TAGGTCCCTGCTTATCTGTCATGGCGTTCCTTGGCTAAGTCTGAAAGCCCATTTGTGTCAAGACT
GGCCTACCATTCTTCCATCTCCGTGTCTCACGTAAGAGAAGGTTAGCGATCCTACACAGATTCTC
AATCAATATGCATTGAATAATGGTCCATTCCCTGGGTAAATCATCTTTCTTTCCCTGCGAGAACA
GCTCTTCTTCAGCTACCGAAGCTTGCAGGTGTGTAGCTGCACCGAGCTTTCTTTTTTGAATTCGG
GTTCCCACGGTATTGATGAGAGCCTTTTTTCCTCGGATCATGTTG
Right flanking sequence: Indices 217486 -- 217985
GATGATACCTTTTTCAAAGTCCCTTGTTTTAATTCGACGAAGAGCTTCTTTATCTTAATCTTACG
CAATTTCGAGATCAGGATATTGAAGAATACCTTCGACGTGTAGCTAAGTAGCTTCGGATTCCTTT
TCCTTGGTTGCCGATCATGAAGAATAAATATAACAGAGTCCACTCCTCTCCCTATTCTATAGGTC
GAGCTATTTCATACCGTCAACTCTTCCTAGTAGCTACCCTTGCTAGCATTGTGCTTTGGAATCGA
TTCTTTATCAATGGCCCACCCTTTCTTTGAACCTTGTCAATGATCGAACTTAAAGATATGAACTG
AGTGCCATTTGATGAGTAACTGAGAACAAGGGAGAGGGATATGGAAAGGATGAAGTAATGAAAGA
CGAAGTCATTGCTAGTAGTAACGACTTGTCACGATCCATTGGTTCATATAAAATCCATGTCCTAG
GTGTATCAAAAAACATTCTTTTCGCTAAGCGTATATAATAAAATA
Found at i:263712 original size:19 final size:19
Alignment explanation
Indices: 263649--263713 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
263639 AAATGAATTT
263649 AATTATCTTATCTAAAATA
1 AATTATCTTATCTAAAATA
* * * * *
263668 TTAATTTATTTTATATATATTT
1 --AA-TTATCTTATCTAAAATA
263690 AATTATCTTATCTAAAATA
1 AATTATCTTATCTAAAATA
263709 AATTA
1 AATTA
263714 ATATTATGGA
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
19 17 0.52
20 2 0.06
21 2 0.06
22 12 0.36
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (19 bp):
AATTATCTTATCTAAAATA
Left flanking sequence: Indices 263149 -- 263648
CTCAATCTATAGATAGAAAGCCCTATGATGGGAAACTATCACGTTAGGTTTGGAGAGAGATCGGA
CCTATTAGATTAACGAATAGGGAGAGCAGATGCAAGCTTTTTCTTTCAATAGCCGGCCAAATGAC
TACAGGATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCG
TACCAGCTCCTTCTACCTATACCTCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTC
AGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGG
ACTCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATCATAGGTACTCAAGATA
TTGTGTCTGGAGAGGTGGATAGATAGGACTGCTAGTTGCTCGATCAGGACCCTAGCTTTATTGCG
AGCCAAAAACCTATTCCTGCGGCATTCCCCCGGTAAAATGAATTT
Right flanking sequence: Indices 263714 -- 264213
ATATTATGGAATTCTCTGTAAGAGCTGCGGAACTAACAACTCTATTAGAAAGTCGAATTACCAAC
TTTTACACTAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACG
TGTTTATGGATTGAACGAGATTCAAGCTGGGGAATTGGTTGAATTTGCCAGCGGTGTGAAAGGAA
TAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTTGTCTTTGGTAGTGATACCTCTATCAAA
GAAGGAGATCTTGTCAAACGTACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGG
GCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAA
GACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACGTAAATCAGTGCATGAGCCTATGCAAACT
GGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAA
Found at i:270930 original size:18 final size:19
Alignment explanation
Indices: 270907--270942 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
270897 AAGAAACAAC
270907 CACCTGC-GTTTGGTGCAG
1 CACCTGCAGTTTGGTGCAG
*
270925 CACCTGCATTTTGGTGCA
1 CACCTGCAGTTTGGTGCA
270943 TTCTTCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.31
Consensus pattern (19 bp):
CACCTGCAGTTTGGTGCAG
Left flanking sequence: Indices 270407 -- 270906
TTTTCGAGGACTACCCTAAGCCTACAAGTAGGCAGGACTTTCAGTTACAATATCTAGGTTGGGCA
AGCTTGGATGCCCCTACTCCCAACAAGTTGCTGGTCGGGATCGTGAAACTCTCGCTGTTTGGTCA
TAAGGATAATAGTTCTTATCTTATTAGGTCAGGGGCGGCCGGCCCGGGGGTTACCCGCGATTGGT
AATGGCATAACCAGAAGAGGAGTAGGGGAGACAAGGTGTAGCGCTGGGTAGCGCATCTGTTTCGG
GTACAGGGGCGACGAGGGGTGCTAACCCGGCCACCCAACCCAGCAGGTCAGGGGCGGGCCGGCCA
TAGGTTCGAATCCTGCCACCTTTCTTGTGGATCATCCTGTGGTTACCGGATGATGGGAATAACAA
AGCAGAAATTGAAAAATGAGCAGAGCACGAAATGTACATAATATATGAATTCTTTCATTTATCGT
TATTTCCGGGTCTTTTCGTTGCATTCACTTACAACAAGAAACAAC
Right flanking sequence: Indices 270943 -- 271442
TTCTTCTTTCTTTCCTCGGTCTTTCGTTCCGTCATATTCCTAATAACTTATCCAATTACAACGTA
TTAACCGCTAATGCACCTTTCTTTTATCAAATCTCAGGGACATGGTCTAATCATGAGGGTAGTAT
TTTATCATGGTGTCGGATCCCACGTTTTTATGGATTCCTTCTTTGTTACCGGGGTCGACCCCAAA
GCCATAATGTCTCAAAACGAGGAGGCCATAGAGAAGTTTTGTATGACTTTGTCTCGAACTTCGTG
AAGAACTCCATTATATCTCTCCCTCGTTACGAACAAAAAAGTGGGGCTGCGCCCCAGTTGTACAC
TCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTCGCGAAGGAACCGGACGTTTGACG
GGCCAGCCCTTTTTTATGCGCCGCTTTACCCTGAAAGGATAATTAGCTTTGCTCCTCTGGGTGCT
AGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGAAGGACTCATCCT
Found at i:283505 original size:28 final size:28
Alignment explanation
Indices: 283465--283521 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
283455 TAGGATAGGG
283465 TGCAGGCGAATAGAAAGAGCCCGGCACC
1 TGCAGGCGAATAGAAAGAGCCCGGCACC
283493 TGCAGGCGAATAGAAAGAGCCCGGCACC
1 TGCAGGCGAATAGAAAGAGCCCGGCACC
283521 T
1 T
283522 TTAGTAGGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.28, G:0.32, T:0.09
Consensus pattern (28 bp):
TGCAGGCGAATAGAAAGAGCCCGGCACC
Left flanking sequence: Indices 282965 -- 283464
TCTTTCTTTCTCGTTAGAGGTAAGAGTATGACCAACCCGGTGCAGTGGTTCCATTCCCCCCTGCG
GTCAACTAGATTCGGAATTGGAAACGACGAATCACACTCTGCAAGGTTTTCCATAGATGTCTGAA
GGGATCAACGCGTGATTGCTCTGTCATCCTCCGACAGCCCCGCTTCCTGCTGCTCCTGCTAATGC
TACCTCCTCCTTTGCTCCTTCGATACGTGCCCGGTCGAAATGTCTTTTTGAGGCCTTGTCAGTTG
CTTTCACTAGCAGCGCTTATGCAAGAAGCACTCGTAGGGTAAAGAACGGTAAGATTGGATGGGCT
TGTTCTTGGGACTAAGAAGACTGCAGCCATTCCATTCAGGTAATGAATGCAATAGTGAATGTCCG
ATCAATAGTAATAGTGCAGTGGGACTTCTTTATGACTTTCCTGTACTTCTGGAGGGTTTGATATG
GATGTAACTTGCTCTAGAATCTTTTCCTAATCGAATAGGATAGGG
Right flanking sequence: Indices 283522 -- 284021
TTAGTAGGACGGCATGAGTGAGCATATTAAAGCGCGAATCCTAGAGGAGGGCAACTTAGCCGGCT
AAACGATACCCAAATGGTCAACCCCCGCTGCTTAACCGGAATCGAAAACTAGAAAGCTAGCACAG
AATAGGTACTTTACGGAATATGGATGTAGTACTGAACTGCTAATGGAAAGCGTACGGGTTCTACG
GGCTAAGAGATTTATCCGGAAATTCAATGCCGTTAGTCTTTTATAAAGAATCAAGCTAGGCTAGT
AAGAGAAGGGAAGAAGTCGAGAAGTCAACTAACTTATAGTGCTTTCCACACCCCGCCCCGTTGAG
GGAAATTTACCTGTGAATGCGGTGCGCTCTCCCTTTCACTCAAAACAAGAGTTCCGTGCCAAGCA
TAAAGATTGAATCAATAGGACCGTATTCTAATCCTAGAAATGCCATAACTCTCTTTCTGAATGTC
TCGACTTTCTTTCTCAAAAAACCGGACCGGACAGGGGTGCGAAGC
Found at i:315146 original size:25 final size:25
Alignment explanation
Indices: 315118--315168 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
315108 GGTAAGGCAT
315118 GGGTGAGGGATTAATAAACTAGCTC
1 GGGTGAGGGATTAATAAACTAGCTC
315143 GGGTGAGGGATTAATAAACTAGCTC
1 GGGTGAGGGATTAATAAACTAGCTC
315168 G
1 G
315169 TACCACGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.33, T:0.24
Consensus pattern (25 bp):
GGGTGAGGGATTAATAAACTAGCTC
Left flanking sequence: Indices 314618 -- 315117
CGGTGGAGGTTTGACCTCGGCGCCGATGAGGATTAAGGTGCCGGACGTCATCCGCAACGTCAAGA
TCGTGGTGCACAGTGTGTACTTGCCATTTCCACATATTAATCAATCCTGTGGCTGCGGCTTACGA
CAGTATCCTAGGAGGCTCAGAAGTCTCAGGAGGAGATCAGACGATGGAAGGAACGTGTGCTGCTC
TGGATGGGCATGGAGGTTGTGGTGAGTCCCCGATGCCTCAGGTCAAGCCAATGGTGGAGATCGAA
GATCACCATGGCCTGTAATTAATCCTGAAAGTGTTGCTTTGGTGACACGTCTCCGTTTATTTTTT
GTCTTTTTTGTGGTCAGTCAAAGACAGAAGAAAGGGGCCGAGGAAGGGGAACCCCTTCGAGTACC
AATCCGGTCCATGTGCTGGTCATTCTTAAATTTAGTCAGACTATAGCCTGGGAAAAATTACATAT
AGAATGTAGATCATATAAAATGAAGGATGATCTAGGGTAAGGCAT
Right flanking sequence: Indices 315169 -- 315668
TACCACGTAGGAAAGGGCGTAACCCCACTCTAAAAGTAGTTCGGTTCCCCTCGGGGAGGTTGAAA
AAGCTCTTCACAATAGGAGCAAAAAGAAGAATTGTCAAGGTAAGGTTGTCGGCATATCTGCACCC
GGCTCAGCTCAAGGTGCAATCCAAGCAAAGTGAGAAGAGCAGGCGAAAGCAAGGTGCGAAGCACT
AGTGACATCCTCAAGGCAACGAGTTATGAGCTCCTAACGGGTAGGAAAACAGAGAATAGAAGAAG
CTGCAATTGCTCCTGTTGAATGAGTTTCAGTTGGAAGAGGGGGCATTAGCCTTTATTATCTATTC
TATCCCGCAAGGCCGAGATTAGTGATTCTCGTCGCTAAGCGAAGACTCTATCATAATCATAACAG
AGTAGCGTACCGGGCAGTCCCCTCGGATCAAAGGAAGGGGTCAGACTAGCAACGGACGAAGCGGG
TGAAGAGCTTAGGTATAGAAAAGGACAAAGAGGCTAGGAGCCGAA
Found at i:323021 original size:5 final size:5
Alignment explanation
Indices: 323011--323035 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
323001 TCGGGAAGAG
323011 ATTCA ATTCA ATTCA ATTCA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA
323036 CATAGAGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTCA
Left flanking sequence: Indices 322511 -- 323010
AGTATACCGGGGTCCCCGGCCAGAACCACACGTGCAAGTTTCCCTGCATGTGGCTCGTCCGCGCT
TTCCGAGGCGCTGCCTGTGACTCAGCATGGGATGGATAAGAAAGAGGGCGTCACACTTTCGTGTT
TAGAGCATTGTCCGAGTGAATAGGCAGCGCCTACCAAGCAAAGCTTTCTTGAAGAGGCTGGTTCC
GCATTTTTTTAAGATGTAGGGGCAAGGCAAGCCCCAGGAAAGTCTAGGTTGGCTTGGCTCCCAGC
TCAATCTCGGCCGGCATCCAGCTCTCGAGGGGGTGGGGTCCTGGAGCGAACTACTCATTGCAGTC
TTGCCCCAACCCAAGGCCGGCCGTTAAGGTTGGTGAGGAGCATTGTTTTGAGGGAGGGAAAGCGT
GGTTGACAAGCCACTTCGAGGAAGCGACTGGAGTGCTTTCATCAAATGATGCATATGGGCTGAGC
CATTCCCATCCCAAGTGGTGGCCCGATTCGGCCTGTCGGGAAGAG
Right flanking sequence: Indices 323036 -- 323535
CATAGAGACTTTTGGAGACTTTTGAGACTTTTGCTATCCGGGAATCTCTTTCTATGTTAGCTAGC
GGGGGCGGGCTTTCCTATGATAGTCCCGCTGCGGCCTCTGACCGTCCGTTACGTCTCATCTTGAT
TTGGCTATACTTGTATGTAGCCAGCCATGTTAGCTTCACATGAGAGAGCCCTTTTTTTTAAGGCT
AAAAACTCATCAGTCAGCTCGGCCCCTTTCCTATTCAGCTTTGCCGCCTATTATATTAAGAGAAT
AGGTCCCGCGGCCCGCCTTTATTCATCTATACCAGCTGCCACGCACGACCCAATAGGAACGATTT
CAGCGCCCCTATCTAGATAAGAAGCAGAACGCGCCATCACCTACAGCCCTTTCCTCTGCCGGGGA
CTTCCACGAAATGAAAACGGGCGGCATCGTCGTATGCTCGACATTGGTTGCCCTGGTTTATATCC
CGGAGTACTCCTATGGCCGATCTGTCACCCAACCTACTAAAATAA
Found at i:323053 original size:10 final size:10
Alignment explanation
Indices: 323040--323068 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
323030 AATTCACATA
323040 GAGACTTTTG
1 GAGACTTTTG
323050 GAGACTTTT-
1 GAGACTTTTG
323059 GAGACTTTTG
1 GAGACTTTTG
323069 CTATCCGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.21, C:0.10, G:0.28, T:0.41
Consensus pattern (10 bp):
GAGACTTTTG
Left flanking sequence: Indices 322540 -- 323039
ACGTGCAAGTTTCCCTGCATGTGGCTCGTCCGCGCTTTCCGAGGCGCTGCCTGTGACTCAGCATG
GGATGGATAAGAAAGAGGGCGTCACACTTTCGTGTTTAGAGCATTGTCCGAGTGAATAGGCAGCG
CCTACCAAGCAAAGCTTTCTTGAAGAGGCTGGTTCCGCATTTTTTTAAGATGTAGGGGCAAGGCA
AGCCCCAGGAAAGTCTAGGTTGGCTTGGCTCCCAGCTCAATCTCGGCCGGCATCCAGCTCTCGAG
GGGGTGGGGTCCTGGAGCGAACTACTCATTGCAGTCTTGCCCCAACCCAAGGCCGGCCGTTAAGG
TTGGTGAGGAGCATTGTTTTGAGGGAGGGAAAGCGTGGTTGACAAGCCACTTCGAGGAAGCGACT
GGAGTGCTTTCATCAAATGATGCATATGGGCTGAGCCATTCCCATCCCAAGTGGTGGCCCGATTC
GGCCTGTCGGGAAGAGATTCAATTCAATTCAATTCAATTCACATA
Right flanking sequence: Indices 323069 -- 323568
CTATCCGGGAATCTCTTTCTATGTTAGCTAGCGGGGGCGGGCTTTCCTATGATAGTCCCGCTGCG
GCCTCTGACCGTCCGTTACGTCTCATCTTGATTTGGCTATACTTGTATGTAGCCAGCCATGTTAG
CTTCACATGAGAGAGCCCTTTTTTTTAAGGCTAAAAACTCATCAGTCAGCTCGGCCCCTTTCCTA
TTCAGCTTTGCCGCCTATTATATTAAGAGAATAGGTCCCGCGGCCCGCCTTTATTCATCTATACC
AGCTGCCACGCACGACCCAATAGGAACGATTTCAGCGCCCCTATCTAGATAAGAAGCAGAACGCG
CCATCACCTACAGCCCTTTCCTCTGCCGGGGACTTCCACGAAATGAAAACGGGCGGCATCGTCGT
ATGCTCGACATTGGTTGCCCTGGTTTATATCCCGGAGTACTCCTATGGCCGATCTGTCACCCAAC
CTACTAAAATAAAAAATCTAAAGGCTTGACCCCGTCCCGTTTGGA
Found at i:345554 original size:36 final size:36
Alignment explanation
Indices: 345510--345604 Score: 190
Period size: 36 Copynumber: 2.6 Consensus size: 36
345500 TCTTCCTCTC
345510 CTTTACTTACAGTCGAGCTCTATTAACATAGACCCT
1 CTTTACTTACAGTCGAGCTCTATTAACATAGACCCT
345546 CTTTACTTACAGTCGAGCTCTATTAACATAGACCCT
1 CTTTACTTACAGTCGAGCTCTATTAACATAGACCCT
345582 CTTTACTTACAGTCGAGCTCTAT
1 CTTTACTTACAGTCGAGCTCTAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 59 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (36 bp):
CTTTACTTACAGTCGAGCTCTATTAACATAGACCCT
Left flanking sequence: Indices 345010 -- 345509
GTAATAAGTCCTCGAATCGGGAAATGAGCTAGCCGGAAAGATTTTTATAACCTGAAGTCTCTTTC
ATGAGCTCAGCTTTAGTGCCACGTTCAAGCTGCAGGGAAAGGCGGGTATGAGCTCATACTAGTTA
GCCGCACCGCACCTCTTCTCGGCACTCGATCTAACTCAAAAAATGAATCTTTCACTGGATAAGGA
AGAGTAAGGTTAGCAAGTCCTCAAGCAGCTTCTAGCACCTAAGAAAATCCTTTAGAGTAACCTAA
CTTCCAAGCATGCATGAGATTATATCTTATATAGAAAATGCACTTAAGCTGTAATGTAATAATAA
GATAATCAGTATCATTCTATTTCCAGCTAAGAAAGCATGTTGAATGATCTAGCTTCCCAAACGAG
CTCACAAGCGAGTGGAACGAAGTAAACAAGAAATAGAAATCGAGCATAGAAGCGGAATATCTTCT
ATTTACGCGCTGGTGATTGAGCTGGAGATAAAGTATCTTCCTCTC
Right flanking sequence: None
Done.