Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_071216
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1174803
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
File 1 of 4
Found at i:7672 original size:11 final size:11
Alignment explanation
Indices: 7656--7681 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7646 TTTCCTTCGA
7656 CCTTTTCCCTG
1 CCTTTTCCCTG
7667 CCTTTTCCCTG
1 CCTTTTCCCTG
7678 CCTT
1 CCTT
7682 CATCCAACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.46, G:0.08, T:0.46
Consensus pattern (11 bp):
CCTTTTCCCTG
Left flanking sequence: Indices 7156 -- 7655
GCAGGGTGGGTTCGCAAGGGCTACTCAATTGGGGACTAATAACTGGTACCTAATCCAATGAGGTT
ACTCAATGGAGGACTAATCCACAGGGAGAGGCACAGAATACATCGACCGAGAGGGGCGTGGACTA
CAGCCATCCGCAGAGAGGGGCTTACAGTGAAGGATTATTGATTGCATTGATTGATACATCTGCCG
AGAGGGGACTAATCCACAGAGAGAGGCATACAGTGATTGATTGACTTGATTGATTGCATTGATTG
CACACATCGGCAGAGATAGGCATAGTGACTGATGATTGATTGCATTGATTGATACATCTACCGAG
AGGGGCATACACAATCCACAGAGAGGGGCGCAACTGACAAGAGAGATAGTCCCATTGATCCACCT
GACAATGAGATGGTATTGATCCATGAGATGGTCCCGTTCTTCCCATACCCTCTTGCCTTACACAT
TCAGTTCAGAAACGACAGCTGAATTCCGTTCAACCTTTCCTTCGA
Right flanking sequence: Indices 7682 -- 8181
CATCCAACCACCTTCCATTCAATAATTCGTTCATCCGCTGTAGTTCAACTTTCAATCGAACATCC
ACAAGATAGAGTGAAAGCTGTAGTGATACTTACTTAAGCTTTAGTGCACTCTTTCAATCGAACTG
AAACTGTCAGGGGATCCAGCCCTATTCATATATTTTGTAGTTGGGTATTAACCAGTTATATATAG
ATCAAGATCCAGCAACATTAGCAAAGGCAGCACCATAAATAGCTTCACCAGCAGCAAAGGCGAAG
ACAAGGGCAGCATAGGAAGCAAAGGCACGATCTATTGCAGCATTTCTTTCCGAGACTTATAAAGG
TCCGGACTGGAGTTGTATAGAGAGTAGGGGAACTCTGGCTGTTTTCCCGAGCAGCTATTGTAGCG
GTAGGGGTGGCCTAGAGAGGAATGCTTGATACCACGGGCCAACTATTGAATCGAATTGATGAGGA
AGGATCGGGCTGGGCTGGCTATGGGGATAAAAGGTTCACATTACG
Found at i:13464 original size:35 final size:36
Alignment explanation
Indices: 13371--13469 Score: 105
Period size: 35 Copynumber: 2.8 Consensus size: 36
13361 TTGAAGGAAG
* *
13371 GATCGCTCTCGCTTGTCGTTGATT-ATTGGGTGGGGTT
1 GATCGCT-TCGCTTGTCGTGGATTGA-AGGGTGGGGTT
* *
13408 GATTGCTTCGCTTGCCGTGGATTGAAGGGT-GGG-T
1 GATCGCTTCGCTTGTCGTGGATTGAAGGGTGGGGTT
*
13442 GATCGCTATCGCTTGTCATGGATTGAAG
1 GATCGCT-TCGCTTGTCGTGGATTGAAG
13470 AGTGATCGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
34 7 0.13
35 21 0.40
36 18 0.34
37 7 0.13
ACGTcount: A:0.13, C:0.16, G:0.35, T:0.35
Consensus pattern (36 bp):
GATCGCTTCGCTTGTCGTGGATTGAAGGGTGGGGTT
Left flanking sequence: Indices 12871 -- 13370
GGGGACACTTATTCTAGTGGATCCACTTATCGCATCTTCAACAACACCGGTTGGAGCATGCACAA
AGAAAGAAAGAGCCTTGCTTCCTTCCAATAAGAGATCGGGGAGGAGTCCAACTAAGGAGCCTTGT
CATTGAGAGCGCTACCGAACCAACCCGCCCTTCCTTCCGCTACTTACCGCTCCGCATCACGAAAG
GAACAACCACCAACAGATAAGCATCGGTAACTTAGACAGAGGAGCGAGATACAAATAGAGAGCAC
AGGCCGGGAATCCATGGTCAGTAATCAATTGAGGTTGCCTTAGGAGCGTTCATCCATATCACTTT
TCGTTGAAGGTCAGGGTCAGGTAAGGTCCAGTCAGGTCCAGTCTGGTCAGGTAAGGGTCCGGTAA
GGTCTGGTCGAGTGCTGAATAGTTACCCTTGCACCCTACTTCCAAAGGACACAAGCTTCAACCGG
ATAGGAAAAGAAAGCCCCTGATCATAGCTGCTACTTTGAAGGAAG
Right flanking sequence: Indices 13470 -- 13969
AGTGATCGCTCTCGCTTGCCTGTATTAGGAGGTGGGGTTGATCGCTATCGCTTGTAGTGGTGGAA
GAATAGAGAAACACCCTGCTCCCAGAACTTTACGGGCACAGTTACAGTCAGTGGAAACAGCAGGG
CCCACAGCAGCACCCACAGAGCCACAGAGTCACAGCAGGCAGAGGCATCGGAAAGACAGCGAGGA
GTGAGTGTCGGGTTCATCAGAGAGAAGAAAACAGAGCGGATAGATCACTTTTGTTTGTGTGAGAA
GCTGACTGAGCCTGGAACTCTAGGAAGGACCTGGATGGATGGATGGACGAACAACAGCCAACGAA
CGTATAGGTAGGTTCGTGAGGTGCACCAAGAGATAAAAGGATATGCTTGTCGCTTAAGCTGCTGG
CCGGGATCACTCAACAGAGGAGGTGGTGTCTGCAAAGAAAAGGTGTGTGCCAGTTGAACGCTTAT
CTCCTTGGTGCTGGTGTGGTGGTGGTAGTGGTGGTGGTAGTTGAT
Found at i:13957 original size:12 final size:12
Alignment explanation
Indices: 13930--13965 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
13920 CTTATCTCCT
*
13930 TGGTGCTGGT-G
1 TGGTGGTGGTAG
13941 TGGTGGTGGTAG
1 TGGTGGTGGTAG
13953 TGGTGGTGGTAG
1 TGGTGGTGGTAG
13965 T
1 T
13966 TGATGATCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.06, C:0.03, G:0.56, T:0.36
Consensus pattern (12 bp):
TGGTGGTGGTAG
Left flanking sequence: Indices 13430 -- 13929
TGAAGGGTGGGTGATCGCTATCGCTTGTCATGGATTGAAGAGTGATCGCTCTCGCTTGCCTGTAT
TAGGAGGTGGGGTTGATCGCTATCGCTTGTAGTGGTGGAAGAATAGAGAAACACCCTGCTCCCAG
AACTTTACGGGCACAGTTACAGTCAGTGGAAACAGCAGGGCCCACAGCAGCACCCACAGAGCCAC
AGAGTCACAGCAGGCAGAGGCATCGGAAAGACAGCGAGGAGTGAGTGTCGGGTTCATCAGAGAGA
AGAAAACAGAGCGGATAGATCACTTTTGTTTGTGTGAGAAGCTGACTGAGCCTGGAACTCTAGGA
AGGACCTGGATGGATGGATGGACGAACAACAGCCAACGAACGTATAGGTAGGTTCGTGAGGTGCA
CCAAGAGATAAAAGGATATGCTTGTCGCTTAAGCTGCTGGCCGGGATCACTCAACAGAGGAGGTG
GTGTCTGCAAAGAAAAGGTGTGTGCCAGTTGAACGCTTATCTCCT
Right flanking sequence: Indices 13966 -- 14465
TGATGATCGCGCGCTTGCCTCCTTGAAAAAAAGGAATAGGTTCCCTGGTGAATTACCCTGCTTCA
TCAGGATAGAAGCATCTCCCCTTGAGGTTGGTTGGAGGATCGCTATCGCTTTCCCCCATTAGATC
GCTTGGTTAGATCAATATCGCTCGATGGGTTATACCCACTGCACCTGGCTTACCTGGATCGGAAA
AGGAAACAAGTTCAATTACAATATATCTCAAAAAACCTCCCCCTCATACCTCGGGAGAGTCCCTC
CGGGTCCTGGGTTGTGGGGGGTTGGAGTCATAATCTTCCACCGGGGTCGGGAACTAGCATTTGTC
AGTAGGCAAATCGATGAACGAAGTACATGTCAGATGATTTGTCCTTCCATGTGATCTAACGCTGT
AAGTCTAAGTAAGGCAGGCAATATTTTCTCCATCCATCCAAACGAAGCCTATTTAGCAAAAATCC
TATACGTGCATGCGTTCGTTGATCGAGAGAGACCTTTGTCGCGCG
Found at i:18821 original size:17 final size:17
Alignment explanation
Indices: 18801--18834 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18791 GAGGAGGCGC
*
18801 AAAAGGTAGTGGATCAA
1 AAAAGGTAGTGCATCAA
*
18818 AAAAGGTGGTGCATCAA
1 AAAAGGTAGTGCATCAA
18835 CTGCAAGGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.29, T:0.18
Consensus pattern (17 bp):
AAAAGGTAGTGCATCAA
Left flanking sequence: Indices 18301 -- 18800
AAATGGACTTCCCATGGACTCCTGCTATAAGTTACTGATGGATCTTTATAAAGTTAAGAACCTTG
CTGACCTTACCTTCTTCACAGCGGACCTATCATAATAGATCTCTTATCAGCACGTTAATAAAAAA
GTTCCTTGGCTCCCTAAAATAAGATATTTTATTAGGCCGCGAATTTTAAGGTTTTTCGAATCTGT
CCCACCAAGACTTTGTGCCTGCTCCGAACCCAGGTATTCAACCGATCAATCCATATTGTCTGGTG
GCATAGCTTAATCGATATCTCGTAAGGTAAAACGTGGGGCTCAATGTCTTCTTCACCTCCAATAC
GTCGTGCTGTAGCTTATATATCTGCACTACTGCTAGGGCTTCTGAGCTACTGCTAATTAGAGCAA
CTAGTGCACTAATGTTAAGTTAATTACAACGATAAGTCCCCATTTCTGACCTCCTTCCTGCTGTT
GTACCTGCTGGCTCTTGGCAAAAGGTGAGAAAGGTGAGGAGGCGC
Right flanking sequence: Indices 18835 -- 19334
CTGCAAGGACGTCTCGATGCGACATCATATAGTAAGAGAGTCTCTCATTTCTATTGAACGGGGTG
GAAAAGTGAAACGTCTCTATGCAATATAGTATAGTAATTAGTAGGTCTGGCCGCTATGAGGTCTG
CTGGTTAGGTTTTTCCCAGCTAGGCCTTCTCCTTATTCCAAAGAACACACCAAGAAGCTCTTATT
TGCTTTCCGCTCTTAGAAGTAATCAGGCCTATTTATTCTTCTCTTTTTCAAATGGAGGGAGACTA
CACTATTAAGGCTTTCACTTGGATTGAACTCGGAGGGCATGGGACTAAAGCATAAATTACAATTT
ATTAATAGCAGGCAAGTGCGATTATCACATATTAAAACGTATAGAGCCGCCGTAGTCCCACCCAT
CATTCCAGTATCTGTGAGCTGTCATTCGTCCGGTGGACCACCCATTCCGGTAGATGGTTTCTATC
AATCTAAGCAATCCAATCAATCTAAATCTCTCCAGCCCAGCCGAT
Found at i:34361 original size:30 final size:31
Alignment explanation
Indices: 34307--34365 Score: 102
Period size: 32 Copynumber: 1.9 Consensus size: 31
34297 ACTACGTGGG
34307 CATTATAAATGCGGAAGGAATTCGCTTTGTAT
1 CATTATAAATGCGGAA-GAATTCGCTTTGTAT
34339 CATTATAAATGCGGAA-AATTCGCTTTG
1 CATTATAAATGCGGAAGAATTCGCTTTG
34366 AAAGATTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 11 0.41
32 16 0.59
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (31 bp):
CATTATAAATGCGGAAGAATTCGCTTTGTAT
Left flanking sequence: Indices 33807 -- 34306
ATGAATTGAAGAGTAGTGATCCGGCCCCGAACTTATTTCATGTATACCTATACATCTTAAAACCG
ATAGCGGATCTGGATATTTGAATATGTCACCGCTGTCCGGGCCCTACTTTTCTATCTTGGTAACT
AACAACAACCCTGGTTAAATCACTTCAAAGGTGGTCGAATTTACGCTGCTCCGGCACCTCTTGAT
CTCGCACCTTCCAGCAAAGGCTAGGTCTTCGAGATTTATTTCCCTAAAGAGAAATACTAATAGGG
AGGGAATAGCTGGTGTAGTGGGATTCCTGGGATTGGCATGGAAAAGCTACAAACAAACTGCTCCC
GCTTCCGAGCATTATGTCGAATTGCTGGTATCCCAGCACCTCTCTCGTTTAAACACCAATGACAC
CGGGGAGGGAAGTGGATTAAAGTGGAGCTTCGTTTGGTATGCGTTGCGGAGAAAGCAAAAATTTG
ATACGGCGCTCGAGTTGCAGAACCGACAACGGCGAACTACGTGGG
Right flanking sequence: Indices 34366 -- 34865
AAAGATTTCAGTCTGGCTCGAGAAGTAGATAGAGGACCAGAGGGGCGTGATGGACACACACCGAA
ATAGAGCCAGCCGCCAGAACTCCAACCAATTCCCTCTCGGCTTTTAAGCTTATTTTGTGAATAGT
TGATACCATCAAAGAGTGGGGCACCGAAGCATGAATAGAGGCATGCATGTATAGATGCGAATTAG
AGAACCGGCTTTAGCATCTCATTCTGCTCGCATCTCTCTTTCCAAAGCATCTCAATCTTCACTTT
TCACGTCGAAGGAGTCCTAATGTAGTTGGTGCTATCCGAACGTAAAGTAATGGCTTTCGTGCAAC
GTTGAAATCGTGAGGGATGTGACCTACAATGTCAGGTCCATGAAATACCTAACCTAAAATACCAC
TTGGAACTGGAAGTTGTTTCAAAAAGGTAGTTGTACCACCATAAGATAGACCTACAGAAGTTAGA
ATGGTAAAAAGGAAAGGTGAAGTATGGGCCTTTGTTTATTCGCTC
Found at i:42562 original size:21 final size:20
Alignment explanation
Indices: 42523--42564 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
42513 AAGGATATAG
*
42523 ATATAGAAGCTTATTCACCT
1 ATATAGAAGCGTATTCACCT
*
42543 ATATAGAAGTCGTCTTCACCT
1 ATATAGAAG-CGTATTCACCT
42564 A
1 A
42565 CCTCCCTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATATAGAAGCGTATTCACCT
Left flanking sequence: Indices 42023 -- 42522
TAAGTGGCCATAGAACGCCCGGAAATGAGTTTTTCGTGCTTTCCCCCAAACATGGATCTACGGGC
TTTGCAACGAGCAGCTCTTAAACCAGAAGGGGCGCTAGCTAGGTCACCAACTCCGAGGAGAGGAA
AGGGCCCTGATTGAGTGATTTTATTGCCAGAATATGATGACTAGGATATAGTGATTGCAGATTGG
TGGGTGAAGAATAGGAAGATATGGCCCACTACTACTAATAGGGAAAGGATGGATGACAGACAGAT
AGGGTTGTTCAGTCTGCCCCAACTAGAGAAAGGGATAGTGCTGCAACCAAACTATCCAGTATCAG
TGCCATACGATATATAGTGAATGACTGGCAGTAAAGAGAGAGAAGACAGGCAAGGCAGCTTGTAG
GTAGTTTCCCCTTTCCATAGTAGCTTAGCGTTATTCGTCGATTCCCAAATGGAAATGAAATGAAT
TAGAAACATGAAAATAGAACTATGTTGATTCACCGAAGGATATAG
Right flanking sequence: Indices 42565 -- 43064
CCTCCCTCATAGCGGGAAATAGCCGGTGTGGGATTGGTAAGAGGAAGGAAGCTTGAAAAGATAGC
AAGCGAAGGTGCAGTGCGAATCCACCGAATCAGGTCAAGTTATCTCGGTCGGCACGGCAGGCCCG
GATCGATCTTGTGAATTCACCACTAACGGAGAAGCGGAATCCCTTTCCCGCTTTTTCGCCCTAAC
GAACGAGAAAGCGCCTAAAGTCCATGAATTATTATATTATATAGGGTATAATAACACTTAACATA
ACAACGGTTACCTAACCTGTCAGGGAACGGGGGGCTGCGCCCCACCAAACAGCAATCTCCTCACT
CTAGTAATTTAAGCATCCGGTAACGGAATGCATTCCAATCAGTAACGGAGCGTAGCACGAGTAGC
GTAGCAGAAGTCGCGTAGCACCCCGACCGAAGGCCCCAAGGAAATAAAGACCTAACCCCCTAAGA
CGAGGCCTAACAAAGCCACCTAGGGAGAGACAAGCCCCTTAACGA
Found at i:42957 original size:14 final size:15
Alignment explanation
Indices: 42938--42975 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
42928 TCAGTAACGG
42938 AGCGTAGCACG-AGT
1 AGCGTAGCACGAAGT
42952 AGCGTAGCA-GAAGT
1 AGCGTAGCACGAAGT
*
42966 CGCGTAGCAC
1 AGCGTAGCAC
42976 CCCGACCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 20 0.95
ACGTcount: A:0.29, C:0.24, G:0.34, T:0.13
Consensus pattern (15 bp):
AGCGTAGCACGAAGT
Left flanking sequence: Indices 42438 -- 42937
TAGCGTTATTCGTCGATTCCCAAATGGAAATGAAATGAATTAGAAACATGAAAATAGAACTATGT
TGATTCACCGAAGGATATAGATATAGAAGCTTATTCACCTATATAGAAGTCGTCTTCACCTACCT
CCCTCATAGCGGGAAATAGCCGGTGTGGGATTGGTAAGAGGAAGGAAGCTTGAAAAGATAGCAAG
CGAAGGTGCAGTGCGAATCCACCGAATCAGGTCAAGTTATCTCGGTCGGCACGGCAGGCCCGGAT
CGATCTTGTGAATTCACCACTAACGGAGAAGCGGAATCCCTTTCCCGCTTTTTCGCCCTAACGAA
CGAGAAAGCGCCTAAAGTCCATGAATTATTATATTATATAGGGTATAATAACACTTAACATAACA
ACGGTTACCTAACCTGTCAGGGAACGGGGGGCTGCGCCCCACCAAACAGCAATCTCCTCACTCTA
GTAATTTAAGCATCCGGTAACGGAATGCATTCCAATCAGTAACGG
Right flanking sequence: Indices 42976 -- 43475
CCCGACCGAAGGCCCCAAGGAAATAAAGACCTAACCCCCTAAGACGAGGCCTAACAAAGCCACCT
AGGGAGAGACAAGCCCCTTAACGAAGTATCCCATAATGCTAGTCTGGTCTGACAAGCAAGCAAGA
TAAGGTGGGGAAATAACGTAATAGATAGATTGAGATCTACACCTCCTTACTTCCTTCTTTCCTTA
GACCCACGCCCATCTACATCTTCTTATCTCCTGAGATCCACGAAAGCCTTATATATGGGATAATC
ACACTTAACGTAACATAATATAAGGAGGGGGAAGGAACCTTTGCTGAGCTCATCAAAGCCCTCAG
ATGACAGCCAATAGATACTGATACCTCTTCACATGCTATCCCGGCCTTGGCTCCCTCCGGCTCCA
TGCTCGGGCCTTTTCCCTATCTATATGCACCGAGCAGAGTAGGGGAATTCGATAGACTCCCCGAT
CTGTTCCTTTCTTATTTTGGCTTGGTTGCTTTTCTTTCTTTCCAT
Found at i:46908 original size:15 final size:15
Alignment explanation
Indices: 46884--46916 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
46874 TGATTAGTTG
*
46884 AGATGGCCTTCCAAT
1 AGATGACCTTCCAAT
46899 AGATGACCTTCCAAT
1 AGATGACCTTCCAAT
46914 AGA
1 AGA
46917 CTTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (15 bp):
AGATGACCTTCCAAT
Left flanking sequence: Indices 46384 -- 46883
GGAACAAAGTAAGCCATTGTTGATGCGGGCTATCCTATCTTTGTCTCTGCATCACCCCGTCTTTA
GGTAATAATAAGTCTATGCATTAGCTTTTTCCTCTGCTTGCTTAGAGGTCTCTGCCCCCGCTATT
GCCCCTGCCTATTACTATGCCTTCGCGACCTATGCCTTTGTCTTTCTATTCCGACTAATGTCTCT
ATATCTCCTGCTAGTAGATCCTTTAGTTAAGGGACTGGTTTACGGGCAATTGGATCAAATAGAAC
CGGATTTGCTGCTATTGGCTATAGGACTGACTCTCGAACCGTGCCTGGATATGTATCCGCGCTTG
GGACTAGGGACTCCACACTTGGTGGCTCTCGAGAGGGAAAGGGCGCTACTATTGGTTATGGGACT
GAAACTTTATATGTTTCCAACGCTGTTAAACTACTGCTATGGGTGGAACTTAATTACTGGATCAT
GTTACTAAGTAAATCTCATCAAAATGAGGATGCGATGATTAGTTG
Right flanking sequence: Indices 46917 -- 47416
CTTATTTATAGTCTTTCCTGGTCCGTGAAGTGATGGTCCGTGAAGTGATGGTTCGTGAAGTGATT
CTTTCCTTCAATCAAGGGCTATGGAAGCATCCGGCTGGCATGGTGCTTTCGATGGATCTGGCCCG
TGCTGCGTTTTCTCAAGATGGTCCATCAAGCAAGGGGCGTCTCCTGCTGTCTTACGGTAGTCCAT
CCTCGGGGTGTCACATAGTGTTGGTGTTCATAATCGATGTTCCAGAGCGCTCTCTTGTAATTGGC
CAGAGTTAGGTCGAATCAGAACGTGGAATGACAGAGGGCACAAGGTTAGCCTAGCTTGATATATA
GTGGTTGGAAAGACTGATCCGAGTCCACTACCTGCTGGATGGGCACAAAAGGAAGGAGCATAGAG
ATGCGATGGTGATAACTTTGACAACCTACATTAGTTCCTCCCTAACAAATCCGCTGCTACCCACG
ACTTTATGGGGTTCTTCTTCTCCCTGCACTAGAAAGGAACCAGAG
Found at i:46955 original size:15 final size:15
Alignment explanation
Indices: 46935--46980 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
46925 TAGTCTTTCC
46935 TGGTCCGTGAAGTGA
1 TGGTCCGTGAAGTGA
46950 TGGTCCGTGAAGTGA
1 TGGTCCGTGAAGTGA
*
46965 TGGTTCGTGAAGTGA
1 TGGTCCGTGAAGTGA
46980 T
1 T
46981 TCTTTCCTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.20, C:0.11, G:0.39, T:0.30
Consensus pattern (15 bp):
TGGTCCGTGAAGTGA
Left flanking sequence: Indices 46435 -- 46934
TCACCCCGTCTTTAGGTAATAATAAGTCTATGCATTAGCTTTTTCCTCTGCTTGCTTAGAGGTCT
CTGCCCCCGCTATTGCCCCTGCCTATTACTATGCCTTCGCGACCTATGCCTTTGTCTTTCTATTC
CGACTAATGTCTCTATATCTCCTGCTAGTAGATCCTTTAGTTAAGGGACTGGTTTACGGGCAATT
GGATCAAATAGAACCGGATTTGCTGCTATTGGCTATAGGACTGACTCTCGAACCGTGCCTGGATA
TGTATCCGCGCTTGGGACTAGGGACTCCACACTTGGTGGCTCTCGAGAGGGAAAGGGCGCTACTA
TTGGTTATGGGACTGAAACTTTATATGTTTCCAACGCTGTTAAACTACTGCTATGGGTGGAACTT
AATTACTGGATCATGTTACTAAGTAAATCTCATCAAAATGAGGATGCGATGATTAGTTGAGATGG
CCTTCCAATAGATGACCTTCCAATAGACTTATTTATAGTCTTTCC
Right flanking sequence: Indices 46981 -- 47480
TCTTTCCTTCAATCAAGGGCTATGGAAGCATCCGGCTGGCATGGTGCTTTCGATGGATCTGGCCC
GTGCTGCGTTTTCTCAAGATGGTCCATCAAGCAAGGGGCGTCTCCTGCTGTCTTACGGTAGTCCA
TCCTCGGGGTGTCACATAGTGTTGGTGTTCATAATCGATGTTCCAGAGCGCTCTCTTGTAATTGG
CCAGAGTTAGGTCGAATCAGAACGTGGAATGACAGAGGGCACAAGGTTAGCCTAGCTTGATATAT
AGTGGTTGGAAAGACTGATCCGAGTCCACTACCTGCTGGATGGGCACAAAAGGAAGGAGCATAGA
GATGCGATGGTGATAACTTTGACAACCTACATTAGTTCCTCCCTAACAAATCCGCTGCTACCCAC
GACTTTATGGGGTTCTTCTTCTCCCTGCACTAGAAAGGAACCAGAGCAGATCCGTGAATGAAGGT
AACGATTAGAAGTACTGAGATGGGTAGATCGGGGTAATAAAATGG
Found at i:62241 original size:24 final size:24
Alignment explanation
Indices: 62197--62243 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
62187 CTGAGTTCTG
*
62197 GATAGGCAATGCAGTTAATAGTTC
1 GATAGGCAATGCAGTGAATAGTTC
*
62221 GATAGG-AGATGCAGTGGATAGTT
1 GATAGGCA-ATGCAGTGAATAGTT
62244 ATGTGCCGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (24 bp):
GATAGGCAATGCAGTGAATAGTTC
Left flanking sequence: Indices 61697 -- 62196
TGGATGGGTGCATGTATAGAAAGACAAGTGTAGGTCGGACTTGGTCAGCTAAGTTGGTAATGCAT
AATGGGTGATACACATATAGAGCAATTGGACTGAGCAAATAAGTTGTTCAACTACTTCCCTATGG
ATGCTGCTACCTTAGCTGCTGAGTAAACTGATTCTAGTTCAATTGAAACTACTGCTGTTGGCTAA
GGATCTGGGCGAAGGAAACCTGGGGCAGTCAAAGGGGGCTGGCTATGAAACGGGCAGAACGGTAA
GAACAAGCTTGAGCGTGAGTAGTGGAACCAGGTTGGACTGGCTCTTTTACTTGAAGCGATTCAAC
GCGCTCCGGTTTGAGGCGATGTGTTTCTCCTGTCTATCCTACCAGAGACACTTATATACTACCTA
TTAGGACATAGCAGTTATAGCTTCACCTAGAGCACACCCATCTCATAGTTATAGATGGGCTCTTC
TGGTTGGTAGATGTAACTGCCTGCCTTTCTCTTCTCTGAGTTCTG
Right flanking sequence: Indices 62244 -- 62743
ATGTGCCGTGGTAGCAGGGGCTAGGACTAGGGAGTAGGGCTAGGTTAGTTTATCCATATAGTGAT
AGATAAAATGGTAATTTTGATCATAAAGCAAAACTGGTTCCGTCAGTCTATATGTCCACAAAGCC
AATACAAAGCCCACGAAGCCTTGTGTCGGCCAGCCACTCTGTATCACCGCAGTCAAGCGTCATAA
TCTGTCCCCTAGCCGCTCTGTATCGGGGCCAATCAATGATTGATTTAAGGGTCCACGAGGTCCTT
GCCCATATCGTCAGTCTAGCCATTTTGGATATGACTACCAGTACAGCCATTGGAGATATAATGCC
AAGAGTGCTATCATGGATCCAGTGCCCACAGACCGATATCGAGAACCACAGCCCGTTGTTTCACT
ACATTCAAAGGTGGAACCATAAGGGACAGGTAAACAAGAAATCACAGGCATATAATCATCATTTT
GTAAAATGACTTAGTAGTTAGTATGCTGGATCTTCTGCTTGAACC
Found at i:64451 original size:15 final size:15
Alignment explanation
Indices: 64431--64468 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
64421 TATTATGAAA
64431 TGGAGTAGACTAGAC
1 TGGAGTAGACTAGAC
* *
64446 TGGAGTAGAGTAGAG
1 TGGAGTAGACTAGAC
64461 TGGAGTAG
1 TGGAGTAG
64469 GCTTATGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.42, T:0.21
Consensus pattern (15 bp):
TGGAGTAGACTAGAC
Left flanking sequence: Indices 63931 -- 64430
AGGAACTGCTGAGTAGTCCACTGGCGGATCAATGGGTGTAATTGGATCAATGGCTGCTACTTAAA
TTGGCTATCGATCTGCTGCGGGCTCTTGAACTAAATATAAATCTCGATCTGCTGGTGGTGGACCT
CGATATCGATCTCGAACCGCTGCTACTGATGCTGGTGGTGGAGCAACTGGATCAATGGGCTCTTC
TTCAACGGGTTATGAATCAACCTTGGCTACCTGCTTTGTTGCCCCTACCGGTAAGGACGCTGCCT
TTCCCTCTGCCCTAGCCTTCGCTCTACCCTTACCCATTCCCTGCTCCTTCCTTTCCAACCTTTGC
TTCTGATGCCTTAGGTGCCTTTGCTTCTGCCTCGTCTCGGACAAGGTAAGTAACTGTTGGATCAT
CTTCAGTAGTACCTGGCTGGCTTAGCCTAGCTGGCTGGGAAGGGTAGTAATATCTAACGGCTCCA
GGTCAAAGCTCATTCGTTCCAATCCGGGTCAAAGCTATTATGAAA
Right flanking sequence: Indices 64469 -- 64968
GCTTATGAGATAGACTTATGAGATTTAGGCGCTCTCCTTTCTTGGTCGAGGATCGAGTGCTCTCC
CAACCAATCAATAGGCCATAGAGAGTCTATTCTAAATGGTTCATGAATCGATGCATGCATCCATG
AACCGTTTAGAATGGTTTATAATGGAAGTGAAGAGCGTGGTTTTGGTCCCCGGGGATAAAATGCT
GCTATTGGATACAAAGGATCTGGTGTTATTGGGAAGGATGAACAAGGTATGGAGCCACCTATCCG
AATCGAGCACAGGCCAAAGTATGCTGCTTTGGGGGCTCTCCCCCAATCCATTTCTATTCCGTTAT
ACTCCTGCCCTCTCTCTTGTCTTTCTTCTTTGATTGGACTTGAGGAGCCGACCTAGCCCGTAGGT
CAGATCTCCGGCCTACCTTATAGAAGTGTTATAGCTGGCTTGAGAGGAAACCGACCCTGATTCCG
CATTCACCCCAGCCTTATCAAGTAAAGGGTAGGAGTACGATACCA
Found at i:68490 original size:14 final size:14
Alignment explanation
Indices: 68471--68511 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
68461 TTCTAGAGTT
68471 CGAGGTTATA-GAGC
1 CGAGGTTATAGGA-C
*
68485 CGAGGTTATAGGAT
1 CGAGGTTATAGGAC
68499 CGAGGTTATAGGA
1 CGAGGTTATAGGA
68512 GGGCTGTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 23 0.92
15 2 0.08
ACGTcount: A:0.29, C:0.10, G:0.37, T:0.24
Consensus pattern (14 bp):
CGAGGTTATAGGAC
Left flanking sequence: Indices 67971 -- 68470
TCCCAATCGAAATGTTCATAAGTAGAATGGTAGCCATAAGCGGATCCACTAAACTAAGTCCCCTT
TCCCTTAAGGTATAGGTTTGGAAACTTGCATTATATATGAGATTATCCAGAGTGGTAAATTTATC
CTCTGTTGGGTAAAGAGGAACCGGGGAGGCCATATGTCTTATGGCTCTGACTGTCTTGCTATGAG
TGGCACTTACCTTAAGTAAATTACTCCCGGCTCTCGGCAAGTGGAGGTGAACATCTCTCCCGGGT
ATGGCTGCTATGACTGGCAATGATCGGCTAGGCCTCCTGGAATGATTGGCTGCTATGTCTTACTG
GCGTATGACCTAAAACGGTGAAATAACATATGTAACGCATCTTCATTCCTTACATATATCCCAGG
AACAATTACAAGGTTTCCCGTATAGGTTGAGGTATAGGGTAAGGGTTTATTGTTATGGTTTTCCA
GGGTCGAGTTCTAGTAAGATTCTAGGACTATGGTTTTCTAGAGTT
Right flanking sequence: Indices 68512 -- 69011
GGGCTGTGGTTTGGTTGATTCATATAAAAAGTTTATGAGATTTCAATTTTAAGTAATAAAAAAAT
CTATTTAATTTATTATTATTGTAGTTCCAATATATGCTAATAGAACTCTTAGTAGTTCATAATTT
AAATTCTATTTATCTTACTCTCTTAGCTTTAGTTCTGTAACAACTAATTCACTCCTATTTTGCTA
TCGCGAAGCCTTACTCTAACTTGCTGTAGTTAAATATAACTAATTAGTAGTTCAACCTGTTGTTC
TCTTAGCTGAGCTAAGCATAGTTGTTCAATCAATCTCTTGCCGTTCTATATGAATTATAAAAACT
ATTTAGCTTACGCTAAGCCTGACTATCACTATAGTTTTCTCTTTAGTGCAGAAGAAATAGAAGTC
ATTCTTTGGACTTAGGCTTATGGCTCCTTCCTTCTTTCTGTTGTCCTTGTTGATTCTGGTGATGA
CGGCTTAAGTTTCCAGGTGAGGTGCGCAGCGGTGAGAGAGGCCCT
Found at i:69637 original size:13 final size:13
Alignment explanation
Indices: 69619--69652 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
69609 ATGACTGTAT
69619 CCAGCCGAGCAGC
1 CCAGCCGAGCAGC
*
69632 CCAGCCGAGTAGC
1 CCAGCCGAGCAGC
*
69645 CCAACCGA
1 CCAGCCGA
69653 TCCCGGGAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.44, G:0.26, T:0.03
Consensus pattern (13 bp):
CCAGCCGAGCAGC
Left flanking sequence: Indices 69119 -- 69618
TAGTGACCGGCTAAAGGCTTCCGGCAAAAGGTGAAAGGCTAGCTAAGGCATAAGATTCAAGGTGA
ACTGGTGCTTCCAGACGACTCACTGTGCGAAGGTTGGGGATGGTTGCAATGGGATGGCTCGATGG
GTGGTTCAATAGGTTTACTCTGAGGGTAAGACTCTTCATAATCCATCTGGCCGCGCCCTCCGGCC
AGTCAGTTATAAATCACTCAAATCCAATCAATCATGTCTGTTTGGCTGAATCCTAATCAAGCTCC
TACTAAAACTCCTTAACATGTCTTATATCGATCGATTGGACTCTGCAACTTAACAGTGACTATGC
TCCTTCCTAAACAAATTGTTAATTAACGTATGTAAGCATCGTCATTCCTTCCATCTAGCTCAGGT
AATCACATTCCCAAGGTTCCGTATCGGTAGAGTTCGAGGTCTATGGTTCCTCCTTAGAGGAGGGT
AGAGTTCGAGGTCGAGGAAGAGGTCAGATTTATGTATGACTGTAT
Right flanking sequence: Indices 69653 -- 70152
TCCCGGGAGCCCCTCCAAGTGGCCCATCCAAGTATTCCAGCCCAGCTATGACCGGCATTGAGTGC
ATCGACTCCTAGCATTGACTACCGTCTATCAAATGAGAACCGGCTATTGGTACTGCCCTTAAGGC
AAGGACTCCCGTCTATGATCGACTATGTATGATTTACTCTGATCTATGGCTCTGTCTGTTTCCAG
CCCATCCCCTGATCCCATCCCATCCCACTCGCTCTATTCCACTGGCTTACCCTAGGATACTCTTC
GATGATCCCATAGGAATAATCATCCGCAGGTGATCCAAGGGGAATAAGCAATGCCGATGACGATG
GAGATACTCCTACTACTATAGTGAGCCAATGGGAATCAATGGGAATCCTCCATGGGGCTTACAGA
GGGGGCTATTACCTACAGAAGCGCTTACTCATACAGATACACAGAGCGATACACGTAGAGAGAGG
TTGGTTACATGATACGATGATGACACGATGAGGTTAGATTAGGTT
Found at i:70226 original size:19 final size:20
Alignment explanation
Indices: 70188--70223 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70178 TTACACATTG
70188 AGGTTACCACAATGGAGGTT
1 AGGTTACCACAATGGAGGTT
70208 AGGTTA-CACAA-GGAGG
1 AGGTTACCACAATGGAGG
70224 GTTCACGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.31
19 5 0.31
20 6 0.38
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.19
Consensus pattern (20 bp):
AGGTTACCACAATGGAGGTT
Left flanking sequence: Indices 69688 -- 70187
TCCAGCCCAGCTATGACCGGCATTGAGTGCATCGACTCCTAGCATTGACTACCGTCTATCAAATG
AGAACCGGCTATTGGTACTGCCCTTAAGGCAAGGACTCCCGTCTATGATCGACTATGTATGATTT
ACTCTGATCTATGGCTCTGTCTGTTTCCAGCCCATCCCCTGATCCCATCCCATCCCACTCGCTCT
ATTCCACTGGCTTACCCTAGGATACTCTTCGATGATCCCATAGGAATAATCATCCGCAGGTGATC
CAAGGGGAATAAGCAATGCCGATGACGATGGAGATACTCCTACTACTATAGTGAGCCAATGGGAA
TCAATGGGAATCCTCCATGGGGCTTACAGAGGGGGCTATTACCTACAGAAGCGCTTACTCATACA
GATACACAGAGCGATACACGTAGAGAGAGGTTGGTTACATGATACGATGATGACACGATGAGGTT
AGATTAGGTTACAAAATGAAGTTACCGATGAGAGGTTACACATTG
Right flanking sequence: Indices 70224 -- 70723
GTTCACGATAAGGAAGGGCACGATCCACTTGAGGTTACGCGTTGAGGTTCGATGAAGTTACACGA
TACAATGAGGTTGGGTTGGTTACACGTTGAGTACTCAGTCAGAGCCATTGAGTGAAACAAATTGC
ATTGACAACTGATGAGTCTGATGGATGAGGCTGGCCGGAAGGTGCGGCCAGAGGCAACTGATTAG
TATTCTGAGAGGGGGCGCACAGACGCACAGTCTTCTGAGAGGGGCGCACACTAGGACGGGGGACA
ACAGACAGACGGGAAGGCTTTGATTGATTGAGATGGCCAACATATTGGGGGTGGGGCGGGACTAC
GGACGGAAACAGCACACATTCATCAGGCAGAGCCAGGAGGTAATCAGTGCCAGGAGGTCGAGAGA
CAGTCTCATTGCCTTAAGGTCGCCGATAAGAAGATGGAGGTGGTCACCCATAGCCAGTCTCATTG
ACAGGAGGACCATAGCCAGTCTCATTCCCAGGAGGTTTCAGTTAC
Found at i:70699 original size:27 final size:27
Alignment explanation
Indices: 70661--70713 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
70651 AGGTGGTCAC
*
70661 CCATAGCCAGTCTCATTGACAGGAGGA
1 CCATAGCCAGTCTCATTCACAGGAGGA
*
70688 CCATAGCCAGTCTCATTCCCAGGAGG
1 CCATAGCCAGTCTCATTCACAGGAGG
70714 TTTCAGTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (27 bp):
CCATAGCCAGTCTCATTCACAGGAGGA
Left flanking sequence: Indices 70161 -- 70660
AAGTTACCGATGAGAGGTTACACATTGAGGTTACCACAATGGAGGTTAGGTTACACAAGGAGGGT
TCACGATAAGGAAGGGCACGATCCACTTGAGGTTACGCGTTGAGGTTCGATGAAGTTACACGATA
CAATGAGGTTGGGTTGGTTACACGTTGAGTACTCAGTCAGAGCCATTGAGTGAAACAAATTGCAT
TGACAACTGATGAGTCTGATGGATGAGGCTGGCCGGAAGGTGCGGCCAGAGGCAACTGATTAGTA
TTCTGAGAGGGGGCGCACAGACGCACAGTCTTCTGAGAGGGGCGCACACTAGGACGGGGGACAAC
AGACAGACGGGAAGGCTTTGATTGATTGAGATGGCCAACATATTGGGGGTGGGGCGGGACTACGG
ACGGAAACAGCACACATTCATCAGGCAGAGCCAGGAGGTAATCAGTGCCAGGAGGTCGAGAGACA
GTCTCATTGCCTTAAGGTCGCCGATAAGAAGATGGAGGTGGTCAC
Right flanking sequence: Indices 70714 -- 71213
TTTCAGTTACTGCCGGTCAGACAATAGGAAATCAGTGCCAGTCAGTAATTGCATATAGCCCCATT
ACCAGCCGGCCAGCCGAGAGCCAGTGAGTGGTCGATCATAGCCAGCAGTATATTAACCATGCTTG
CCTGGAAAGATAGATATTTATTTAGTGATTTATCAATGGGCTACCTGGCTAGGGGCAGGCACTAT
GTTCGCTTAGACAAGATTCGGGAAAACCTTCTCATTTAATGGTTTTAGTCAACAAAACCTCGCTT
TGAGGGGATCGGAGGTTTAATCCTCATTTGGGCACTTAAAGGAGATTTGTTATTTACTTAACTAT
GCCTTTTCACAACGTTGACCTATGACAGGCAGGATGCCATCAATTGCTTTCGCCTATTGCTCGGG
GATAGGAGGAAACGAGGAGGGATAGTCAATTAAACGAGGGCTGCGAGAACCGAGGATCATGCATT
AGGCTGGCGGGAGGATTGAGCTTTATGACTAGATGGAGGTGTAAG
Found at i:76716 original size:15 final size:16
Alignment explanation
Indices: 76688--76718 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
76678 ATCACAAACA
76688 GAGCATTGGATTAATT
1 GAGCATTGGATTAATT
76704 GAGCATT-GATTAATT
1 GAGCATTGGATTAATT
76719 TAAGCAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (16 bp):
GAGCATTGGATTAATT
Left flanking sequence: Indices 76188 -- 76687
AGGGATCACATTGTGGAGGTTAGGCAGGCCAACGTAGTGTGAGTAGAACACGGGTCACCAATTAG
GAAGGGGAGTCTTTGTTTGATGATGAGTTATGGTTTTTACCTACCAAAGGGAGCATTCCAAGTGG
ACATTCCAAATTGGGCATTCTTGCTTCCTCCCTACAAAACAAAGTGGGCTTTATGTAACAAAAAA
GCAGCCTTCGTAGATTATAGACGTGGAGAGCACAAACAGAGCTGATTCTGTGTGGAGATAATAAA
CAGAGCCTGATCAAGTCCCATAGCACGAGAGAGGAACAGAATCACAAGAGAGGCTTGGATTTAAA
CAAGAGGAATGGAAACATAACAGAGCCGGAGCTTAACACGAGGTGATAAATAGAGCCCGGCTTAC
TGAGAAAGAGATACACTTACAGGTATACCCACTACACACACAAACACAACACGTAGAGCTAGAGC
AACACTACACACAAAGCAGAGTATATATACGTGATATCACAAACA
Right flanking sequence: Indices 76719 -- 77218
TAAGCAGTATTTAATTCGGTCTAAAGTAAAGACAGGCGCACTACGCGTTAGTGGGCGTGTGATTG
CTTTTTTTGTTTTAACGTATATAATGCAATAAGGAAGTTGTGGGAGTGAGTAAGGTCACCCATTA
ACTGAACCACCGATAAATGCATTACGTGTTTTCAATTAACAGGCCACTTATGGGGCTTCCCGCTG
AGCTGACCGGACCTGAACAGATAGATACCTTGGTCCAACTTTTATCGGGATACTCAGATTCATAC
CTACGCCTTGATCCTTGCTCGCTGGCTTGATTACAGACGGGCGGCTGCCTTCCGAGGAGGCTAGA
GGGAAGGAGGGATAAACCGGTGCTGACCCAAGTGATCGAGAGAGTTATTCACGGCCTATTACTAA
ATTTAATTACTTGTTACTAAATTTGTTCCCTTGGTTTCTAAACTTGGTTCCTTACCTCGGTTCCT
TCGTTCCTTTCATGGTTACCTTGGGCCTTCCCTTGGCCTACTGCT
Found at i:78199 original size:15 final size:15
Alignment explanation
Indices: 78148--78193 Score: 92
Period size: 15 Copynumber: 3.1 Consensus size: 15
78138 TACCCCATCC
78148 ATCTGTCACTTCTAA
1 ATCTGTCACTTCTAA
78163 ATCTGTCACTTCTAA
1 ATCTGTCACTTCTAA
78178 ATCTGTCACTTCTAA
1 ATCTGTCACTTCTAA
78193 A
1 A
78194 ATTGTCGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (15 bp):
ATCTGTCACTTCTAA
Left flanking sequence: Indices 77648 -- 78147
AGGAAGGAACTAGCTCGACCAACTACTAATGATGCCCCTCATCCGGGGTGTTGGGCGTAGCTTAG
GAACAACTGAAGGGCCGGTCCTTACCCACTCCAAGGTAAGGTAAGGGCCCATCGGTAAGAAGGCT
CCAAGACCCATCGGTAAAGTAAGGAAAGATTCTCTCTTTTGTGTCCTGCGGAGCTAACAACCCAC
GCCTATATGGATAGATTCACCCGCCCACGCCTCTAGGATTTGAGGATATACTCTTGGCCAGTTTA
TAGGCAAGAAGGCCAGTCAACTGGATGGCTTCTGGATGGCTTAATGGCTTATCAAATAGTTAGGA
GAGCTTGCCCCACACCGCGCCTCATGACTTGCTACTGGTTCTAGAGGAATAGGTGCGGGTTATGG
GAAAACACCTGGAAAGTGAATGGAGGTGGGTGGGAACGATTACGGGTAAGGGTAAAGGTAAGGGT
CAGGGATAGGCTAGGATTACGCTATAGGCTTTGTCTACCCCATCC
Right flanking sequence: Indices 78194 -- 78693
ATTGTCGAGAATCAGAAAAGGACACTTGTCGATCGAGTGTGGCGGATCTTACACATGCAGGTATT
GACAATCGCTATTGGGCATAGTAGTATCAACCGCTACATGTGCCTGTCGGCAGGCCATCGAGTGA
GTGCTCCTTCCTTAGGGCATTGCGGGACAATAAAATTGAGTATTTCTGGATGGGAAATAAACCTT
CAGTGGCCCATCCGATCAGAGAGTATCCAGATGTTCCGCATATTGAATGTAAAACAATAAAATCA
GGTTTCAATTGAATGGACTCCCCCCCATAGTGAACGATGTCGATCCCTAGGATCTAGTAACGGGA
CAAACAAAGGGATACTTACTGTATAACCCAGAGACAGGTGTTTGGATTTAAAACAGAGATGTGAT
CTTCAATGAATGAGAAGTGCAACGTCCCCAGTCGACAATTGACATGTAAATAATATATGTCGAGC
CAGCCATGACTTTCGCTATTGGCGAGTATTCAATAAGAAAGTATG
Found at i:88500 original size:19 final size:19
Alignment explanation
Indices: 88476--88514 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
88466 CCTTACCTTT
88476 CATTCAGACACTACACACA
1 CATTCAGACACTACACACA
88495 CATTCAGACACTACACACA
1 CATTCAGACACTACACACA
88514 C
1 C
88515 CGGGCAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.38, G:0.05, T:0.15
Consensus pattern (19 bp):
CATTCAGACACTACACACA
Left flanking sequence: Indices 87976 -- 88475
TCGAGAGCCAATTAAAGAGCCGGTGCCTAGCTTAGCATCGGTGTAGATAAAATATCCACTTAGAC
CTTCCAATTATAGTGCCAGTTGTTTATCTTGATCCATCACCATATAACTACGTTCCTACTTTTGA
CCCTACTGACAAATAACTAGAAACAAAGCGAGTTTCCAGGGTGGGAGAAGCATAGGTTAAAGCAG
GAGCAAAGGCAAAGGCAATTGACCTCATTGAAGTATACCCCGTAGCAGTTTAAGGTGCAAAAGGT
CAAAACCTAACAAATAAAAAGCAAATGAGGGCGCAGTATTTATGGCATCAATCAATCCAGCCCAG
GGAATGCTCACGAGCAGCCGATCCCATCCTTCCTTCCTACCAGCACGCGAGGCAATCCTTCATCC
TTACTTACAGACAGGGCTCGGAATGCAGTCAAGCATGAAATCAACTGCTCCAAGAGAGACAGACC
AGCCATTGCTTTCAGTCCTCACACGGAAGGACCACCCTTACCTTT
Right flanking sequence: Indices 88515 -- 89014
CGGGCAGGACATCAGACTCACACCCAGTGAGACCCACAACTGCTCCGCCCATGCTCTGCCAGGGG
TTGGAATGCAGCCCTCCAAGCCTTTCAATGTAGACTAAAAAGCAAGCAGGGGAGGACAGACAGCC
TACCAGCCAATTCAATGCAGACAATACACTCCCATCACTAGGCAGTTACAGCAGGCATCCAGCTT
TCCATCCAAGGGAATAATTCATCCAACTCACTAGTTGTAGTAATCAAGCTCATCTATTCAATCTA
ACCTAATTGGTACTTGCAACTACGACAAAAGGGTATGGTTATGTAACTAATTACGTAATTACTGT
TACTTGTTGTAATCACACTGATCACATTAAGTGTCACAAAGCATCATAAGCACACCATATCTAAT
CACACCAATGTTATGCTAAGCTGTTACTACGAGTCTATCAGTCTCAATATGATAGGAATAAGGAT
CTTCATTGATTAGGGAATAAGCCAAACCAATCAATAGTGCTAAGT
Found at i:90201 original size:47 final size:49
Alignment explanation
Indices: 90132--90234 Score: 165
Period size: 47 Copynumber: 2.1 Consensus size: 49
90122 CCAGCCAACT
*
90132 CAGAAGACTAATCAGTTTAGAGAATCCAATC-AATCAACTTGCCTC-CC
1 CAGAAGACTAATCAGTTTAGAGAATCCAATCGAATCAACTCGCCTCTCC
*
90179 CAGAAGACTAATCAGTTTAGAGAATCCAATCGAGTCAACTCGCCTCTCC
1 CAGAAGACTAATCAGTTTAGAGAATCCAATCGAATCAACTCGCCTCTCC
*
90228 CGGAAGA
1 CAGAAGA
90235 TGGTTCAGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
47 31 0.61
48 12 0.24
49 8 0.16
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (49 bp):
CAGAAGACTAATCAGTTTAGAGAATCCAATCGAATCAACTCGCCTCTCC
Left flanking sequence: Indices 89632 -- 90131
TACCAAAGTTACCACCAAACAAGATCGATTGATCGATGGATGGGTTACCCGGTTCGGAGCTGGTA
CTCGGGTTCGTTGCACCAGATTAGAGTAGAGACCCACTAACTCCACTAACGATTAAACTAACCAC
TCCAGAAGCTCCAGTCAGTGCATGAAGTGAAGGAAGCTCTTCTCTGTTACAGAAAAAAGCTCTAG
TCCATGGAAGCTCTAGTCGGTCCATGAATGAAGTTCTGGTCAGTGCAGGAAGCTCTAGTCAGACA
GTGCAGCTCGGCATTTACAGTCTAATTGACTGGTGGTCGCCAATAAATAGGTGGTCATATAGCCA
ATTCGATAGCTGATCATTGTAAGCCGGTGGTGTGGTCATAGCTCGGCTTGGATCCCGGGCGCGGT
TGGGCAAACAGTCATAGCCCAGAGACAATCATTTACAGTCTCATTGCCAGGAGGTCAACGATAGC
CAGTTTCATTCCCAGGAGGTTTCATTGCTAGCCGGCCAGCCAACT
Right flanking sequence: Indices 90235 -- 90734
TGGTTCAGTTGGAACTCGCTCTCCCGGAAGATGCAATAAAGTAAGAGAGCTAGTTATTCTGTCTG
GCAATGCTGGGTACGAGAGCTGGTAATGCTGGGGCCGTGAGGGAGTTTATTGGGCCTTGAGAAGG
GGAATGGATGGATGGGTACGTGGGATGTGGATATGATGGGGAATGAACTTATGCTTCGATGGGGA
CAAGCTATGGGGAATGATGGGTACGTGAGATGGTTATCAAGTAAGAAATCTAATTAGTCTTTCTA
TGAATGATGGGGACAAGCTATGGGGAATGATGGGTACGTGTTAATAATTGGGACGTGAGATGGGT
CAGTTGTAACACCTCTCCCGGAAGCCATTGGGCTGTAGTCCGTCCGTGAGAGACCCTTTCGTGGA
AGAAGTGGGCAGTCATCATTCGTGCGTAGGAGACCTTCCCTTAGAAGATGCTTCGATTCATCCGT
AGGAGACCCTCTCTTAGTTGGTAAGACGTATTTGGTGTCCGGTTG
Found at i:96537 original size:18 final size:18
Alignment explanation
Indices: 96514--96554 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
96504 CAGCAGCAAT
96514 ACCTTACCGGAATGGCCC
1 ACCTTACCGGAATGGCCC
*
96532 ACCTTACCGGGATGGCCC
1 ACCTTACCGGAATGGCCC
96550 ACCTT
1 ACCTT
96555 GATTTACGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.39, G:0.22, T:0.20
Consensus pattern (18 bp):
ACCTTACCGGAATGGCCC
Left flanking sequence: Indices 96014 -- 96513
GGGCCTACTATAGGAAGGGCTAACTCCTTTATTGATAGCAAAAGAGTTAGCTTGGCTGGGCGATG
GGAAAGATGGCGGCTTGAGAAGCCATAAACCGCCTCGTAAAAGCCACTCCCTCGTGAAAGCCTTT
CCCCCAAGAATACATTCGCTTCCTTGCCTTAACGCAGGATGGAAGACCTTCCTTAGCTAGTGCAG
GACGGGCTAACGGGTGGGGTTTCTCACTGACCTTTACTTTGGCTAACTAAGATGGCACAACCATG
CCTTTATTTTGGCTAACAAGGAAGGGAACAGAGGTAACTAAACCATGCCTAAAGAGGAAGGGTGA
TACCACTTAAACAATACGATGGATTTATCTCCTCCCCCTCCGTTGTAAGGGGAGCGATTTCTCTC
CTATTTTAGGGACTGATACAATCCACTTTTCGATATTCTAACCATATCTCGGTTTCTAACCATAA
CAGCAGCAGCAATAACCTTCCACCCACAGCAGCAGCAGCAGCAAT
Right flanking sequence: Indices 96555 -- 97054
GATTTACGGGCTTATACTACCGGGCTTATACAACGGGCTTATACAACGACTACGGGTACGGGCTC
ATGATTAATACGACTTATACGGGCTTAAATGTGTATCCTTCCTGCTAGATCAAATATCCTTCAAT
ATCAAATCGTAATTTCCATTAGTAAACCATGCTAGCTAGTCAACCATCCCAACCAACCTACCCAT
TGCTGGTTATCACTGGGTCCGAACCTTTCTGGTGGGATTCCTAGTCTCTGGTGGGCTGGTGAGCA
AAGGAAAGTAATCATATCAGTCTCAGTATTACCGCTTCTCGTGGGCGGGCTATTCTTTAGTCCTT
ACCTTCCACAGATAATATCCTTCCTGCTAGTGCAGAGCGTAGCGAGTATGGCCTTGTACTTAATA
TGAATACCTTACCTTTCTCTTCCACTCGAAAGTATTTTTGAAAGGTATTTCCAAAAGTGTTTCCA
TTACTATCCACGGCCCTGCTTTCCCCACTGCTTTCCTCAGCCCCG
Found at i:96593 original size:13 final size:13
Alignment explanation
Indices: 96560--96602 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
96550 ACCTTGATTT
96560 ACGGGCTTATACTA
1 ACGGGCTTATAC-A
*
96574 CCGGGCTTATACA
1 ACGGGCTTATACA
96587 ACGGGCTTATACA
1 ACGGGCTTATACA
96600 ACG
1 ACG
96603 ACTACGGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (13 bp):
ACGGGCTTATACA
Left flanking sequence: Indices 96060 -- 96559
TTAGCTTGGCTGGGCGATGGGAAAGATGGCGGCTTGAGAAGCCATAAACCGCCTCGTAAAAGCCA
CTCCCTCGTGAAAGCCTTTCCCCCAAGAATACATTCGCTTCCTTGCCTTAACGCAGGATGGAAGA
CCTTCCTTAGCTAGTGCAGGACGGGCTAACGGGTGGGGTTTCTCACTGACCTTTACTTTGGCTAA
CTAAGATGGCACAACCATGCCTTTATTTTGGCTAACAAGGAAGGGAACAGAGGTAACTAAACCAT
GCCTAAAGAGGAAGGGTGATACCACTTAAACAATACGATGGATTTATCTCCTCCCCCTCCGTTGT
AAGGGGAGCGATTTCTCTCCTATTTTAGGGACTGATACAATCCACTTTTCGATATTCTAACCATA
TCTCGGTTTCTAACCATAACAGCAGCAGCAATAACCTTCCACCCACAGCAGCAGCAGCAGCAATA
CCTTACCGGAATGGCCCACCTTACCGGGATGGCCCACCTTGATTT
Right flanking sequence: Indices 96603 -- 97102
ACTACGGGTACGGGCTCATGATTAATACGACTTATACGGGCTTAAATGTGTATCCTTCCTGCTAG
ATCAAATATCCTTCAATATCAAATCGTAATTTCCATTAGTAAACCATGCTAGCTAGTCAACCATC
CCAACCAACCTACCCATTGCTGGTTATCACTGGGTCCGAACCTTTCTGGTGGGATTCCTAGTCTC
TGGTGGGCTGGTGAGCAAAGGAAAGTAATCATATCAGTCTCAGTATTACCGCTTCTCGTGGGCGG
GCTATTCTTTAGTCCTTACCTTCCACAGATAATATCCTTCCTGCTAGTGCAGAGCGTAGCGAGTA
TGGCCTTGTACTTAATATGAATACCTTACCTTTCTCTTCCACTCGAAAGTATTTTTGAAAGGTAT
TTCCAAAAGTGTTTCCATTACTATCCACGGCCCTGCTTTCCCCACTGCTTTCCTCAGCCCCGCTT
TCCCCAGATGAAAGTCGCTTTCCCCACCATAAGCAAGCTTTACGG
Found at i:97337 original size:10 final size:10
Alignment explanation
Indices: 97322--97367 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
97312 GTACCTTTTC
97322 TAACCGCACA
1 TAACCGCACA
97332 TAACCGCACA
1 TAACCGCACA
*
97342 TAACCGCTTC-
1 TAACCGC-ACA
97352 TAACCGCA-A
1 TAACCGCACA
97361 TAACCGC
1 TAACCGC
97368 TACTCGAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 7 0.22
10 24 0.75
11 1 0.03
ACGTcount: A:0.35, C:0.39, G:0.11, T:0.15
Consensus pattern (10 bp):
TAACCGCACA
Left flanking sequence: Indices 96822 -- 97321
GTAATCATATCAGTCTCAGTATTACCGCTTCTCGTGGGCGGGCTATTCTTTAGTCCTTACCTTCC
ACAGATAATATCCTTCCTGCTAGTGCAGAGCGTAGCGAGTATGGCCTTGTACTTAATATGAATAC
CTTACCTTTCTCTTCCACTCGAAAGTATTTTTGAAAGGTATTTCCAAAAGTGTTTCCATTACTAT
CCACGGCCCTGCTTTCCCCACTGCTTTCCTCAGCCCCGCTTTCCCCAGATGAAAGTCGCTTTCCC
CACCATAAGCAAGCTTTACGGGCACCCACCCTAAACTATAGCTTATACCTTTCATTATCGCACAT
TACCGCACATTACCTTTACTATCCACAGCAGCGTCTTTAGCAGCAATAGTAAGTCCCCAACAGAT
TGGATAAGAAGGAGACAACTAACCCCAACAGACTATCCCCAACCTAAGGAAGATAAAAGCCCTCT
ACTATAAAAGAAAGATAGATATAGATACTTTTCACGTACCTTTTC
Right flanking sequence: Indices 97368 -- 97867
TACTCGAATGGCTTGTACTCGATGGCTTGTACTCGAACTCTATCCTTACTGGCTAATTACTGGCA
TCTATATCTATCTATTTAATTACTTCTTCACTGGCTTCTATCCCCAACAGCACATTTCCACTAAT
ATCCCACTGCCTGACTCTGAGGGGAGTACTCCGTGTATTACATATAAATTAAGCAATCCACGTAT
TTATGCCGAAGGTCCTGAACCGGAATGTACTGCCGTATGTTTCCTTCTGATGGCGAACGTATGAA
GGCGAACGTAGGTACACGCACGCACGCTCGGTCTCCACCCACACCTTCCACAGACTACTGGTACG
GGCTCATTATTAGTACTACTTATACGGGCTAAAGACTACTTTTACGGCTAAAGACTACTATATGG
TATCACGGTATCACGGAGAAGGTCTAACGGTCTCGAAGATACGAATACTGCTCCCTGCCGGTCGC
ATTAACCCAACACTACTGCTCCCGTTCAGACTACTGGCTCATACT
Found at i:97388 original size:15 final size:15
Alignment explanation
Indices: 97368--97404 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
97358 CAATAACCGC
97368 TACTCGAATGGCTTG
1 TACTCGAATGGCTTG
97383 TACTCG-ATGGCTTG
1 TACTCGAATGGCTTG
97397 TACTCGAA
1 TACTCGAA
97405 CTCTATCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (15 bp):
TACTCGAATGGCTTG
Left flanking sequence: Indices 96868 -- 97367
TCTTTAGTCCTTACCTTCCACAGATAATATCCTTCCTGCTAGTGCAGAGCGTAGCGAGTATGGCC
TTGTACTTAATATGAATACCTTACCTTTCTCTTCCACTCGAAAGTATTTTTGAAAGGTATTTCCA
AAAGTGTTTCCATTACTATCCACGGCCCTGCTTTCCCCACTGCTTTCCTCAGCCCCGCTTTCCCC
AGATGAAAGTCGCTTTCCCCACCATAAGCAAGCTTTACGGGCACCCACCCTAAACTATAGCTTAT
ACCTTTCATTATCGCACATTACCGCACATTACCTTTACTATCCACAGCAGCGTCTTTAGCAGCAA
TAGTAAGTCCCCAACAGATTGGATAAGAAGGAGACAACTAACCCCAACAGACTATCCCCAACCTA
AGGAAGATAAAAGCCCTCTACTATAAAAGAAAGATAGATATAGATACTTTTCACGTACCTTTTCT
AACCGCACATAACCGCACATAACCGCTTCTAACCGCAATAACCGC
Right flanking sequence: Indices 97405 -- 97904
CTCTATCCTTACTGGCTAATTACTGGCATCTATATCTATCTATTTAATTACTTCTTCACTGGCTT
CTATCCCCAACAGCACATTTCCACTAATATCCCACTGCCTGACTCTGAGGGGAGTACTCCGTGTA
TTACATATAAATTAAGCAATCCACGTATTTATGCCGAAGGTCCTGAACCGGAATGTACTGCCGTA
TGTTTCCTTCTGATGGCGAACGTATGAAGGCGAACGTAGGTACACGCACGCACGCTCGGTCTCCA
CCCACACCTTCCACAGACTACTGGTACGGGCTCATTATTAGTACTACTTATACGGGCTAAAGACT
ACTTTTACGGCTAAAGACTACTATATGGTATCACGGTATCACGGAGAAGGTCTAACGGTCTCGAA
GATACGAATACTGCTCCCTGCCGGTCGCATTAACCCAACACTACTGCTCCCGTTCAGACTACTGG
CTCATACTACTACGACTACAGGAAGGCATTAAGGAATTAAGGCTG
Found at i:97743 original size:19 final size:20
Alignment explanation
Indices: 97707--97751 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
97697 CATTATTAGT
97707 ACTACTTATACGGGCTAAAG
1 ACTACTTATACGGGCTAAAG
*
97727 ACTACTTTTAC-GGCTAAAG
1 ACTACTTATACGGGCTAAAG
97746 ACTACT
1 ACTACT
97752 ATATGGTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (20 bp):
ACTACTTATACGGGCTAAAG
Left flanking sequence: Indices 97207 -- 97706
CAGATTGGATAAGAAGGAGACAACTAACCCCAACAGACTATCCCCAACCTAAGGAAGATAAAAGC
CCTCTACTATAAAAGAAAGATAGATATAGATACTTTTCACGTACCTTTTCTAACCGCACATAACC
GCACATAACCGCTTCTAACCGCAATAACCGCTACTCGAATGGCTTGTACTCGATGGCTTGTACTC
GAACTCTATCCTTACTGGCTAATTACTGGCATCTATATCTATCTATTTAATTACTTCTTCACTGG
CTTCTATCCCCAACAGCACATTTCCACTAATATCCCACTGCCTGACTCTGAGGGGAGTACTCCGT
GTATTACATATAAATTAAGCAATCCACGTATTTATGCCGAAGGTCCTGAACCGGAATGTACTGCC
GTATGTTTCCTTCTGATGGCGAACGTATGAAGGCGAACGTAGGTACACGCACGCACGCTCGGTCT
CCACCCACACCTTCCACAGACTACTGGTACGGGCTCATTATTAGT
Right flanking sequence: Indices 97752 -- 98251
ATATGGTATCACGGTATCACGGAGAAGGTCTAACGGTCTCGAAGATACGAATACTGCTCCCTGCC
GGTCGCATTAACCCAACACTACTGCTCCCGTTCAGACTACTGGCTCATACTACTACGACTACAGG
AAGGCATTAAGGAATTAAGGCTGGCTCAATATCCATCCCCACCAGACCTTCCCCACCAGACCTTC
TCTTCCACCCGAAAGTATCTTTATCTTTAGTCATCTTGCTTAGCCATTCTGCCTAGTGAATGAGG
TACTTTTCTAGAGGGAAACAGATATTGAATATCAATGAATATCTTTGATGGCAGTTCATGAGGCA
CATAAGGAAGGCATTAAGGCTGGAATTAAGGCATTCCCCAACAACCAACCAACTCACGGTCTCAA
GGAGAAGGTCTAACCCAGTTAGGCAAGTCATAAGGAAGGCAACTGATATGATATCCATTAGCCCT
TTGGGAATATGGATTGGTCTAACCCTGTTGATGGAGACAGATTTA
Found at i:97936 original size:14 final size:14
Alignment explanation
Indices: 97917--97946 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
97907 TCAATATCCA
97917 TCCCCACCAGACCT
1 TCCCCACCAGACCT
97931 TCCCCACCAGACCT
1 TCCCCACCAGACCT
97945 TC
1 TC
97947 TCTTCCACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.57, G:0.07, T:0.17
Consensus pattern (14 bp):
TCCCCACCAGACCT
Left flanking sequence: Indices 97417 -- 97916
TGGCTAATTACTGGCATCTATATCTATCTATTTAATTACTTCTTCACTGGCTTCTATCCCCAACA
GCACATTTCCACTAATATCCCACTGCCTGACTCTGAGGGGAGTACTCCGTGTATTACATATAAAT
TAAGCAATCCACGTATTTATGCCGAAGGTCCTGAACCGGAATGTACTGCCGTATGTTTCCTTCTG
ATGGCGAACGTATGAAGGCGAACGTAGGTACACGCACGCACGCTCGGTCTCCACCCACACCTTCC
ACAGACTACTGGTACGGGCTCATTATTAGTACTACTTATACGGGCTAAAGACTACTTTTACGGCT
AAAGACTACTATATGGTATCACGGTATCACGGAGAAGGTCTAACGGTCTCGAAGATACGAATACT
GCTCCCTGCCGGTCGCATTAACCCAACACTACTGCTCCCGTTCAGACTACTGGCTCATACTACTA
CGACTACAGGAAGGCATTAAGGAATTAAGGCTGGCTCAATATCCA
Right flanking sequence: Indices 97947 -- 98446
TCTTCCACCCGAAAGTATCTTTATCTTTAGTCATCTTGCTTAGCCATTCTGCCTAGTGAATGAGG
TACTTTTCTAGAGGGAAACAGATATTGAATATCAATGAATATCTTTGATGGCAGTTCATGAGGCA
CATAAGGAAGGCATTAAGGCTGGAATTAAGGCATTCCCCAACAACCAACCAACTCACGGTCTCAA
GGAGAAGGTCTAACCCAGTTAGGCAAGTCATAAGGAAGGCAACTGATATGATATCCATTAGCCCT
TTGGGAATATGGATTGGTCTAACCCTGTTGATGGAGACAGATTTATGAGACTGATAGGGAAGGAG
AACAAATACAGATACCAGTCCTGATCGAATATCCTTCCTGATCGAAAAGGGAAGGAGAACAAATA
CAGATACAGATGAGAACAAATACTGATAGGGAAGGAGAACAAAGTGCTTCCACGCATAAACGCTT
CCACTGAATCTAGCCATATGCTGAGATAACAGGTAACTTAATCAT
Found at i:103652 original size:25 final size:24
Alignment explanation
Indices: 103605--103656 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
103595 TCTACTCAGC
*
103605 TACACATAGAGCTACTCACAGAGGA
1 TACACATAGAGCTACACACAGA-GA
* **
103630 TACACGTAGAGCTACACTGAGAGA
1 TACACATAGAGCTACACACAGAGA
103654 TAC
1 TAC
103657 TCACAGGGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (24 bp):
TACACATAGAGCTACACACAGAGA
Left flanking sequence: Indices 103105 -- 103604
CTAATCCACTTCCCCATAGGCTACTACTCTGCTGCTAATACAATAAAAAAAAAGGGTAAGTTATA
GATGTAATTCTCCATATTCTTGAAGAAGGGTTAGTGACACTCATATAGTGAGCTGTAGTCTGCAG
AGTCTGATAGGTATGCCCTTGCACTCCTTCCCACTTCCATAGCTGAGAGGAAGGAGAAATAAGTT
ACCCTATTGGGGTGAAACCAGAAGACATTGGTCGGAGCTTAGTTGGAGCCATGTTGGTTACTTCA
CGAGCATATACATGAGGCAGCGATCCAGGTGTTGTAGATGCCGATACTACATGCCAAGTGTCGAT
GCCCTCTTGTCTATTTTGGACCCGATAGAACATTTCTTTCTTGGACGAATGACTGCTTGAACGTT
GGCAGCCTTACCGATCGAGACAGAACACAAGGGGCCTAATCCATGGGCCTAATCACAGGAAGGGG
CCTACTACAGAGCTACTACAGGCTACAGGGAGGAGTCTACTCAGC
Right flanking sequence: Indices 103657 -- 104156
TCACAGGGCCTAATCACTGGGAGGGGCACTTACAACATCTACTGAGATGGGCTACAGTTATTGAT
TGTGATAGCCCAATCTTCGAGATAGGCGATCCCACGGACGGACAAATGACAGACTCAACCACTGG
CCCAGAGGAAGGAGATGGCCCCCATGAGAGAGAACCGAGGAACCTGAACAACGTGCCACATCCAC
CCAACACGGGAATAAGCTACGGGAAAAGGTACGAGACGGGAAGGGCCGAGTGAGTGAGGCACAGC
CGTGGGGTGGGGACTTTACCAATATACAATAGCCAATACTCTATGCTGCTACTTTATGCTGCCAC
TATACGTTGGCACTCAATGTCCGGTGTTGACGCTGCTGGTACTCAATCCAGGAGTCTTTGTCGAT
CCCAAGAGTTCAAGATGTCGATGTCAGGAGTCAATTTATTCTTGTCTGGTTGCGAACCGATGGAG
ACGATGCTTACTTACGATTCACCTGTTTGAGGTTCATCCCCATAC
Found at i:105242 original size:12 final size:12
Alignment explanation
Indices: 105225--105255 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
105215 CGACAGCATC
105225 GAGTAGCATAAT
1 GAGTAGCATAAT
*
105237 GAGTAGCATTAT
1 GAGTAGCATAAT
105249 GAGTAGC
1 GAGTAGC
105256 GGCATCGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (12 bp):
GAGTAGCATAAT
Left flanking sequence: Indices 104725 -- 105224
AGAGGTAAGACACTTACAGCCCATTCCCCTCCTTCCTACACCCATCCAAAGTACCCTTACCGCTA
GAAGAAAAGTCCGCCAAGTTTGCGTAAAGCACCCGCCCAGTCCGATCAGTACGCCCAGTACGCCA
AGTCCGCCAGATGAGAAAAGAGAAGTCCCCCTTCAATCCATACCCGAGAGAGAAGTTTCCCATCA
TAGCTAGAGAGATGTACACCATGCGACATAGAGTGAATGGCTAGACGTGTTGCTAGAGGGAGGTG
ACTAGCTCGTGGGTGGGAAAAGGGGACTATGTGCTGTGAACGACGGCTATGTGCATGCTGTTAAT
GACGGCTAGGCGATACCTTCATACCAAGAGCGAGTTACTGTACCAAGGCTGAGTGTCAGGAGAGT
GCCAAGTAGAAGTTTGATGAGGCAGAGGTTTGTCTGAGGCGGCATAGTTTTTTCGAAGAATAGTC
CAAAGGGGTATTATTTTAATGATGGACTCTTGTATCGACAGCATC
Right flanking sequence: Indices 105256 -- 105755
GGCATCGTCCAATACTACTCCTGGCTCGCCCATAGCATCGACACCTGGGATCGCCTGCATGGACT
CCTGGGTCGAGTAGCAGGATCGCCACCTGTATAACTACCGGGCACGTACAACAGTACTTGGCAAC
GTGGCACGGAATATAGGATATGAACAACTGGGTACATACTAATGGTTAATGCACCGAGTATAGCA
TCCCATGAGAGTATAGGTTCAATGACTATAGGTTCCATCCATGCACTGACCCTATTTCTAGCTTG
AGTAGAGCTATAACTGACCGTAGCATCGAGGCACTGACTGTCTGTATGCAGCCCAGCGCAGTAGC
TCAAAACTGAGTATCCAGGCTGAATAGCCCATTTGAAAAGTCCATTTGAATAGCGCAGTAGCCAA
AGTTGAGTAAAAAGGATCCAGGCGTAGTAAACCAAAGCAAGCAATTACCGGCTGAAAATGAGGGA
CTACGGGCTATGACCTTTCTAGCGATGACCTAATGGCACTGACTA
Found at i:105617 original size:13 final size:13
Alignment explanation
Indices: 105601--105634 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
105591 GTATCCAGGC
105601 TGAATAGCCCATT
1 TGAATAGCCCATT
* *
105614 TGAAAAGTCCATT
1 TGAATAGCCCATT
105627 TGAATAGC
1 TGAATAGC
105635 GCAGTAGCCA
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (13 bp):
TGAATAGCCCATT
Left flanking sequence: Indices 105101 -- 105600
AGTGTCAGGAGAGTGCCAAGTAGAAGTTTGATGAGGCAGAGGTTTGTCTGAGGCGGCATAGTTTT
TTCGAAGAATAGTCCAAAGGGGTATTATTTTAATGATGGACTCTTGTATCGACAGCATCGAGTAG
CATAATGAGTAGCATTATGAGTAGCGGCATCGTCCAATACTACTCCTGGCTCGCCCATAGCATCG
ACACCTGGGATCGCCTGCATGGACTCCTGGGTCGAGTAGCAGGATCGCCACCTGTATAACTACCG
GGCACGTACAACAGTACTTGGCAACGTGGCACGGAATATAGGATATGAACAACTGGGTACATACT
AATGGTTAATGCACCGAGTATAGCATCCCATGAGAGTATAGGTTCAATGACTATAGGTTCCATCC
ATGCACTGACCCTATTTCTAGCTTGAGTAGAGCTATAACTGACCGTAGCATCGAGGCACTGACTG
TCTGTATGCAGCCCAGCGCAGTAGCTCAAAACTGAGTATCCAGGC
Right flanking sequence: Indices 105635 -- 106134
GCAGTAGCCAAAGTTGAGTAAAAAGGATCCAGGCGTAGTAAACCAAAGCAAGCAATTACCGGCTG
AAAATGAGGGACTACGGGCTATGACCTTTCTAGCGATGACCTAATGGCACTGACTAGCTGAATGA
CTGACTAGAGCTTCTAGCAATTACTTTACTAGATCTATTAGCGCGATGACCCACCTTCTAGCTCT
GACCTTAGGGCTGCTTCTATTATACTGGCTATGATCATCAAAAAAGGGTGAATCATATATAACGA
GCTGTCGTACACCTCGCTCTTGTTGTGATATAATGCTAACCTGCTCCAATCCACAATCTAGGCAG
CTTAGTAACCTAACTCTATAAACGCGTCTAAGCATTCTATTATGTTTGCAACATATCCTTTCTCT
CGGCTATGGCCTTAGGCTATAACTACCAGCCATTGGCTCTCGGCCATGACAACTGGCAAGTCTTC
CCGGCTATGTGCTATGTATTGGCAATAACCCCTGACAATGAAATA
Found at i:112118 original size:20 final size:20
Alignment explanation
Indices: 112093--112132 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
112083 CATGGGCCTT
112093 TACCCAAGGGAGAGATCGTC
1 TACCCAAGGGAGAGATCGTC
112113 TACCCAAGGGAGAGATCGTC
1 TACCCAAGGGAGAGATCGTC
112133 CCGAAATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.30, T:0.15
Consensus pattern (20 bp):
TACCCAAGGGAGAGATCGTC
Left flanking sequence: Indices 111593 -- 112092
AGGTGTGGAGGAGGCACTTAAGAAAGAGCTCAAGGCCTTCGCTATGCGTGCGTAAGACACCGAAG
GGAAGGCCAGATCTCTAGTGACAGAATTACGGCACTATATAATGTGTGGGTGGGGGTTTGGTGAT
TCAAGTGGGGTTTCGGGGGTCCGACTCCCTGCCTATCAGGTCCGCATGCCCCAACCAAGCAAGTA
TGAAAGGGAAGGCGGTCCACGGAGCATAATAACGATATAGTCTAATTAGGTGGAAAGCTTTCAAG
ACCCAAGATCCACTCCGTCTCCATGATTTTAGGAAGTTCAGATATGGGCATCAAGGACTTGAATT
GGATTGTTTAGGATAAAAAGAGGCCTGCCTGCCATAAAAAGAGCAACGAAGTCTCTATGAAGGAA
AGGAAAGAGCCACCCTTTCTATCTGTAAGGAGGGGCCCCAACCCAAGTGAGATTCTTCATTCCTA
CCTAACTAAATGGATTAGAATGAGGGAGATCCAGCCATGGGCCTT
Right flanking sequence: Indices 112133 -- 112632
CCGAAATGAAGAGATTCATTTCATTCCTCCGATAGCCCCTGCCTGGGAGATATATGCTTCGAAGC
ACAAGTGAGAGATCCGCTTACGATCATCACTTCATCCTAGCGCATCTGATCCCGTCCGATTCTAA
CCGACCGATTGAGCCAAGCACAAGCCCTCATGTATGTACCGGCCGGATACGGATGGATGTTGGCT
CTCTTCACATATCGTTCCGTTCACCTAGACTCTATTTCACCGAACAACTAGCTGGAATTCCTCCC
AATCTGCACCCGCTAAGATGTTATCGCCCCACACTAGCATTTTATATCCGATATCCGACATCGGA
ACTTCCTGGTTGCGCGGTTCATTGCGGGTCATTGCGGAAAGCCCTCTAGTAAACTAAATCTATCC
AGTTATTTGTATGCGGGTGCCGGTGGGAGGTATAGTTGGCTAGTGAAAGTAGGAAGCTAGGTTGT
AAGCTAGGAAGCTAGGGGATATAGATAGGAAAGAGAGCTAGGAAG
Found at i:115272 original size:14 final size:14
Alignment explanation
Indices: 115253--115281 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
115243 GATAATATAT
115253 GAAGCGTATTTTCC
1 GAAGCGTATTTTCC
115267 GAAGCGTATTTTCC
1 GAAGCGTATTTTCC
115281 G
1 G
115282 TATTATACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (14 bp):
GAAGCGTATTTTCC
Left flanking sequence: Indices 114753 -- 115252
GCCAGCAGATAGGGTCACTTTGACTTATATTTTTGGGCCAGCTCGCTTGCAAGGGTTGTGATAAC
CATTTAAAGGGGCCCCTTCTAGCTAGCTCGGATAAGTGCTTTCTTTTTTAGCCGCCTTACCTGCC
AAAGATGAGCAGACTGAGCAGAGCTCAGGACCAGGACCTTATTCTTTTCATAAGTAAGTCAGGGT
GGGCTCTTTGAAGGGAAGAAATAAGCCGGTTCCTTACCTGAGCGGAGCGCAGGACCAGCCCTTCC
TTATTTCCTTGCCCCCTCAAAGCCTGAGCAGAGCTATTTTTTCTTTCCCTGCCTGAGCGTAACTC
AGTACGGCCGCCTTACCTTAGCTCTTTGAGGGGGGGGAAGAAATAAAGGGCGGCTAAGGGCCTTC
CCCGAGGTAATAACCTGAGCATGGCTCTTCGCCTAGTATCATATAGGCTTTTCAGTAATGACGTA
TATAAAAGTATTTAACTCATTACTAATGAGTATAGGATAATATAT
Right flanking sequence: Indices 115282 -- 115781
TATTATACTACTTAAAATAAAGAAATGAAAAGAAAGACTTAATATATGCTTTTCAGTAATGACGT
ATATATTTGGCTCAGCTCAGTCAGGGAAAGTCTTTTAAGGGCCCAGAGTAAACGACGTAAGGCCA
ACACCTCTCCCACAACCTCCATGAACTTTATGGCGACTCATGCTTGGGCACAGTAAAGGAAGCCA
AGGTAGTATAGAGACTTGTATTACCTTAAAAGCATTACTGGACTTCCTGTTCCTTACTATTCTGG
TCTTGCCTGACTAGTAAGGCGGGGATACGGGCCTAAAAATAGCCCTTGTGAAGCCTGTTCTTAGG
ACCAATCTGGAGTCATGTCTGAAGGCCCTAGGGAATCCGGGTCTAAAAATAGAGCCTTGTGAAGC
CTGCTCTTAGGACCAATCTTAAGTCATGAATCTTTCATTTCAAAATAGACGAAGAAAGGGACAGG
GCTGATGCCACAGCTGGCAGCCCTAGCCCAGATCAAACCAGATTA
Found at i:116825 original size:18 final size:18
Alignment explanation
Indices: 116794--116848 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
116784 CCGGGTGGCC
* *
116794 CCTTCCTGTCCCGTAACTT
1 CCTT-CTGTGCCGTAGCTT
116813 CCTTCTGTGCCGTAGCTT
1 CCTTCTGTGCCGTAGCTT
116831 --TTCTCGTGCCGTAGCTT
1 CCTTCT-GTGCCGTAGCTT
116848 C
1 C
116849 TTTCCTTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 4 0.12
17 12 0.38
18 12 0.38
19 4 0.12
ACGTcount: A:0.07, C:0.36, G:0.18, T:0.38
Consensus pattern (18 bp):
CCTTCTGTGCCGTAGCTT
Left flanking sequence: Indices 116294 -- 116793
CGCTAGATTCTAAACTCTCTCTCTTAGACACCCTTCCCCGCTTATATCTCTTCTCTCTCTCCCTC
CTCGACCTTGCAGCCTTCCAACCTGCCTTCATCGCTACGCACCTAACCTTACCCTAGATTGAGAG
CTGAGCTGGACCCTTCTTACTTGCCGTCCCTTAGAAAGGCTAAGTCAGAAGGTTCAAGGCGACTG
GCTAAAGGCTTCCGGCTGATTCCTTCCTTCCCTTCCCAGTTACATGTAAGTCTGTCCTCGCCACC
ATCCGTCCGTGGGACCGGACCACTGCTCTCAACTGGCAATAAATCAACTCAATCACTCGCTCAAA
TGACTGTTTGGCTCTGACAAGTGGGAATGATTGGGAATGATTGGCTCTTGGCTGACCAACTAGCA
ATGACACCTATCCTGGGAATGATATTGGCTATCGACAATGACCTTCTGGCAATGATTGGCTATGT
GGGCTACGTTGGGTGACTTATATGAGGCGAGTATGCCGGGTGGCC
Right flanking sequence: Indices 116849 -- 117348
TTTCCTTGTTGGGTGGATGTAGCGTGTGTTGAAGGTGACTTCGGCTGGTAGGATGGGTCTATGTC
TGGCCGGTAGGACGGGTCTACGGCTTGTATGGTGGGCTGTTGGACTTGTCTAATTGGCTTCCGGC
AGAAGTTGGGCTAGTCTAATGGATGACTTCTGGTGGAATTCTTTAGGCTTATGGCTTCTGGAAGG
TGACTGTCTAAAGGCTCAAGGCCCTTGGTTATAGGTAAAAGCTCGAGGCTCTCGGCAAAAAGGCT
CCAAGGCATCTCTCTGTTGTACCTACCTGGTGAGTCATCTGTTGTCCTTGGTGAGGCTGTGAAGG
CTAAAGTGAGGCGATTAGGCAATAAGTAAGGCGACCAGTCATGCCATGCTGCTGGTTGGTCTGTG
TCGATCTCCGAAAAGCCTTCTTAAATGCGTCTTTTCCTAAAGCAAATGGCCCATCGTGTCTCTGG
GGTCGGAGTAATATCCTCCATCCACCGGGGTCGAGAACTTTCATT
Found at i:122606 original size:23 final size:23
Alignment explanation
Indices: 122545--122606 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 23
122535 GGCTATGACT
*
122545 CTGTGGCTTGCCCTTGCCTTCGTTA
1 CTGTGGCTTG-CCTT-ACTTCGTTA
* *
122570 CTGT--ATTGCTTTACTTCGTTA
1 CTGTGGCTTGCCTTACTTCGTTA
122591 CTGTGGCTTGCCTTAC
1 CTGTGGCTTGCCTTAC
122607 CTTACCTATC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
21 12 0.40
22 3 0.10
23 11 0.37
25 4 0.13
ACGTcount: A:0.08, C:0.27, G:0.21, T:0.44
Consensus pattern (23 bp):
CTGTGGCTTGCCTTACTTCGTTA
Left flanking sequence: Indices 122045 -- 122544
TAAGAGATCAGGTTGGGTGAGACCTGGTTGGTCGGGCAAGCTCTTGTAAGAGGCATAATCAGGTG
GGCTCAGGTAAAACATGACCTTCAGGCAGGAAAAGGTAGGCAGGCTCAGGTAAGGTGAGGTAGAT
TCAGGTCAGGCAGAGTCGGATCAGGCAGGATAAAAAGGCAAAGTTGGATCAGGCAGGACCTTTTT
AGGCAGACTCAGGTAAGGTAAATTCAGGTGAGGCAGAAGCTTAGTTTTTGGGTAGCTGTTGGGAT
AGATTTTGATGCATGCCCACTAACCCTCGGTTTGAGAGAAACCCCAGGAACAAACAGAATCAATC
TCCTTCTGGGTTCGTGCTATGCCCTCTGGGTTCTTACATAGTATTACAAGCCCTTCGGTACAGAA
TCAATCGGTAGAGAAAGGCTTACAAGCCCTGCAGTAAAAAACAGAATCAATATCCTTTGGGAGCA
TTAGCTTGCCCCTACGGGATTGGGCCACAATAAATGGCTATGACT
Right flanking sequence: Indices 122607 -- 123106
CTTACCTATCCTAGCTCAGTAAGGGTTTCCGGCAGATTTGGCAGCGAAAGAGCACTTTGTGGCCT
TTCCTGGCCCCTAAGGGAGATATAGACTTATCATCCTTTCAAAGCCTTTCAACGCCTATTGGCCT
TCCTTACTGTCTGTAACGAAGTAGACTTATTTCCTTGGCCGCTATATATCCCCCACCCAGAAGAC
AGGGTCAATGCGCCTCCTTAATTCCCATAATTATTGTGTCCTCATCTTTATGCTATATACATGAT
ATGAGTCATTACTAGGTGGGTGGAAAGCCTCATATATTGGGGGTATATGGAGGTATCCCTTTAGG
CGCAAGCACACAATAGTTCAGCAGTCATATTACGTACGTATATATAGATAGATCGCTCGAACCAG
CCAGATCGGAGAGAGAAGCAAGCCGGCTATCGATCCGTCATTAGGACAATAAGGAAAGAAAGTAA
TCCTTTTCTGTCTTTTGGTTCCTTTTCTGTCTTTTTAGGCCGAAC
Found at i:133451 original size:23 final size:22
Alignment explanation
Indices: 133417--133463 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
133407 TATACGTATA
133417 TTTCCTTCGATAACTGATCTCC
1 TTTCCTTCGATAACTGATCTCC
* *
133439 TTTCCTGTCGATAGCTTATCTCC
1 TTTCCT-TCGATAACTGATCTCC
133462 TT
1 TT
133464 GGCATAGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.15, C:0.30, G:0.11, T:0.45
Consensus pattern (22 bp):
TTTCCTTCGATAACTGATCTCC
Left flanking sequence: Indices 132917 -- 133416
CAATTTCCCCCCCATTCAGCAAAAGATCGATGGGAACCATTTACTTACCGACTCCTCCGCAGCAT
CAATAGGTAAGGTCGAACTCACTACGCGCTGCACAAGTCCTCACAATCAAGATTCGCTAGAGCAA
AAAGGGAGCTCGTAAAAGCACAAAAGTCTAGTTTCGTCGCACTAAAGTTGTCGTTCAAGTTATGG
TGTTATATAGTTTAGTGTACGGCTTTATTCATGGGTAATTTGGGAGGAGGGGACGTATTCCTTCC
CTGGCTCTGGCTGGGTAAGTAATAAGTGAAGCTTAAAGGTAAGAGATATCTCGCAGGAAGAAGCA
AGAAAGCTGGATCTATGGTTAGGAAATGCATAAAATGTCTGTCTATGGTTGGCTTTGGCCCTTCG
GTAAAAGGGCCTTCCTCGTAGTTAATCTCATATGTAATGCAATCGGACTTATGCCTGGCTCCCCC
TACCCCCTGAGCTAGAGGATAGGGGAGTCAAATTATATACGTATA
Right flanking sequence: Indices 133464 -- 133963
GGCATAGCTTCGCTTCTCTGTTCCAGTGTTTTCTTCTTGTCCATAGGTGATCTGTTCCAGTGCCA
GAGCCGAGTCTCTGTTATAGTGCGTGCTAGCTATGTCTGCTGCTACAGGGATGGATAGCGGTGGC
TGGTCCAGCGATAGCAGTGATAGATGCTGTTAGAGCTCTTACCTAGGTAAGGTATCAATGAGAGC
GTGTGAGAGGACCCAGGTATCAATGATAGCGGTAGGACTGGCCCCTGCCGATCGAAATGCTAGGA
ATAGCGGCGGTGTAGGTCAGGTCCTTCCTTACCTGCTCGTATTAATTGTCTAACTGATAGGTAGG
ATCCCTGCCCGTATAAATGATCTCAATGATAGCAATAGCAATGGGGCCTGTAGACCAGTTATTAC
AGTTTTAATGCTAGGATTTGCGATCTATCCGTATACCTGTGCGACCGTATAATGGTTTTACCTGT
ATATCCGTATTAAAGATAGCACTAATTATTATATAAGTAGCTGAT
Found at i:135565 original size:15 final size:15
Alignment explanation
Indices: 135545--135578 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
135535 TTGGCAACAG
*
135545 CAACTACGGATACGC
1 CAACTACGGATACAC
*
135560 CAACTATGGATACAC
1 CAACTACGGATACAC
135575 CAAC
1 CAAC
135579 AGCCTTGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.32, G:0.15, T:0.15
Consensus pattern (15 bp):
CAACTACGGATACAC
Left flanking sequence: Indices 135045 -- 135544
CTATTTCAGTACGTGATCAGGAAAGGAGTTGTTAGTACCCACCTGTTTCATTCTCACGTGAAAAC
AGGAATGATTAGGTTGTGGTGGTGCTTCTTTATGCGTGAACAGTTTATCATACCCCCCATGCCCT
GGAGGTAGCGGTTTTCTTAGTGCATTACCCGTTATAGAGTCACCGTTGCCAGTTTGACGTGCACA
GGATGTGAGGTGCGTGGTTCTTTGTGCGTGAACAGTTTATCTCATATCCCATCCCCAGGAAGGAA
GCAGGTGGTGATTCTTAGTGTGTTACCTTTTTTCTTTACCACGTGCCTTGGAATGAGGTGGTGGC
CTATGTGTTTTACCTGTTCGACGTGCCCCATATGACGTCCAGGAAGGAAGTTCAACGAGTTCAAG
AAGACCCAGGTTATAGTGAACAAAGACCAAATGGTTTCTCACTTGTCTTATACCTTTCCCGGGAG
TTAGGAGACAGGGTAGAGAACGAAAGGATATTGTGTTGGCAACAG
Right flanking sequence: Indices 135579 -- 136078
AGCCTTGCTCATTGAGCCCCCCCCCTACCCCACAACTACGAAAGAAAGACATGCATGGAGGTGGT
GGGCTCCCTCGTATAATGCACGAATGGATGAAAAAAAAGAATTGTTAAGCCCGAATATATACAGG
TGCAGGCTCGCTTCACCCCTGGCTCTTGGTCTAGGGGGGGTTAGCTCGACTTCGTTTGACCTACA
CTTTATTTGACCTTACTATACCTAGTACGGATTAATAAGAGGGCGGCGAGATTAGGGTAGGGCAG
GGTGTTTAGTTTTTTTGTTTAGTTCCCGAACCATCCATTAGGGGTTTAGTTCCATCCAATAGGGA
GGGGTTTGGTGGGCCCGGACACTGACTTGATTGGTCCCACTGACGGCGCACATAGTGTGAGGTGA
GGCGGTTCCACGGACGGATGATGTAGACGTGTGAGGTGCACCAAGAGAGAAAAGGCTTTTATGCT
TGCCGGGTTCTTACGCTGCTGGCTGGCCGGTAGATGTTGCCAGAG
Found at i:136215 original size:15 final size:15
Alignment explanation
Indices: 136195--136227 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
136185 GAGATTTATT
136195 ACGGATGGATATCGA
1 ACGGATGGATATCGA
136210 ACGGATGGATATCGA
1 ACGGATGGATATCGA
136225 ACG
1 ACG
136228 CTTGCCTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.18
Consensus pattern (15 bp):
ACGGATGGATATCGA
Left flanking sequence: Indices 135695 -- 136194
CGAATATATACAGGTGCAGGCTCGCTTCACCCCTGGCTCTTGGTCTAGGGGGGGTTAGCTCGACT
TCGTTTGACCTACACTTTATTTGACCTTACTATACCTAGTACGGATTAATAAGAGGGCGGCGAGA
TTAGGGTAGGGCAGGGTGTTTAGTTTTTTTGTTTAGTTCCCGAACCATCCATTAGGGGTTTAGTT
CCATCCAATAGGGAGGGGTTTGGTGGGCCCGGACACTGACTTGATTGGTCCCACTGACGGCGCAC
ATAGTGTGAGGTGAGGCGGTTCCACGGACGGATGATGTAGACGTGTGAGGTGCACCAAGAGAGAA
AAGGCTTTTATGCTTGCCGGGTTCTTACGCTGCTGGCTGGCCGGTAGATGTTGCCAGAGGTGTTG
TCTGCAAAGGTGGGTGGATCGATAGAGCTAGGGTTACAACAGCGCTTTGGTTATATACGATTCAT
TCGCCCAGGACAGCTTTAAAATAGAGGGAAGGAAGGAGATTTATT
Right flanking sequence: Indices 136228 -- 136727
CTTGCCTACCAATGAAAGATCTTGCCTAACCTTCGATAGATTCATTGACATTCAAGGAGCACTGA
TCACCATTAATATGCGACCGAAGGGAGCTAAGGAACCAGGATAACGTTCAAGCGACCGAAGGGAG
CGGGTATAAAAGAAGTGGCCTGCCTGAAAGAAGTGGCCTGCCTGATGCCCGTCTACTTCTTTCTG
CCTGCCAGAGCTGTTCTACCTTATCCGTTCTGTTGGGAAAGTTACCGGCATGAGTTGGTTAGTGA
AGATCTTGGTTAGTGATGGTTATCGGTAGGACAGGAAGGATTAAGAGGAATACCAGACTGAATGG
AGGAGGCCCCTGAGTACGACCCTCTATCTAAAAGTATGGGCCCAGAACCTAAGGGAGGAAGCCCT
TATAAGGAGAAGGATAAGATGGATCCTTCTTCCACTAACGTACCTCTCCCAAAGAACATACCTTC
GATAGTCCTTCCCTAGCATCATCTCATACCTTCTTTCCTTATTCT
Found at i:136389 original size:18 final size:18
Alignment explanation
Indices: 136366--136402 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
136356 AGCGGGTATA
136366 AAAGAAGTGGCCTGCCTG
1 AAAGAAGTGGCCTGCCTG
136384 AAAGAAGTGGCCTGCCTG
1 AAAGAAGTGGCCTGCCTG
136402 A
1 A
136403 TGCCCGTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.22, G:0.32, T:0.16
Consensus pattern (18 bp):
AAAGAAGTGGCCTGCCTG
Left flanking sequence: Indices 135866 -- 136365
GAACCATCCATTAGGGGTTTAGTTCCATCCAATAGGGAGGGGTTTGGTGGGCCCGGACACTGACT
TGATTGGTCCCACTGACGGCGCACATAGTGTGAGGTGAGGCGGTTCCACGGACGGATGATGTAGA
CGTGTGAGGTGCACCAAGAGAGAAAAGGCTTTTATGCTTGCCGGGTTCTTACGCTGCTGGCTGGC
CGGTAGATGTTGCCAGAGGTGTTGTCTGCAAAGGTGGGTGGATCGATAGAGCTAGGGTTACAACA
GCGCTTTGGTTATATACGATTCATTCGCCCAGGACAGCTTTAAAATAGAGGGAAGGAAGGAGATT
TATTACGGATGGATATCGAACGGATGGATATCGAACGCTTGCCTACCAATGAAAGATCTTGCCTA
ACCTTCGATAGATTCATTGACATTCAAGGAGCACTGATCACCATTAATATGCGACCGAAGGGAGC
TAAGGAACCAGGATAACGTTCAAGCGACCGAAGGGAGCGGGTATA
Right flanking sequence: Indices 136403 -- 136902
TGCCCGTCTACTTCTTTCTGCCTGCCAGAGCTGTTCTACCTTATCCGTTCTGTTGGGAAAGTTAC
CGGCATGAGTTGGTTAGTGAAGATCTTGGTTAGTGATGGTTATCGGTAGGACAGGAAGGATTAAG
AGGAATACCAGACTGAATGGAGGAGGCCCCTGAGTACGACCCTCTATCTAAAAGTATGGGCCCAG
AACCTAAGGGAGGAAGCCCTTATAAGGAGAAGGATAAGATGGATCCTTCTTCCACTAACGTACCT
CTCCCAAAGAACATACCTTCGATAGTCCTTCCCTAGCATCATCTCATACCTTCTTTCCTTATTCT
CTATTTGTCCTTTCTTTTCTTTTTCCTCCTCTTGAAGGGAGGGGGAAACTCGAACGAACCACGGG
GCTAAAGATAGCAGAAGAATGGACAAGCTTAATCCCTCTTTCATTCGTTCTTTCATTCATATCGA
TTTGGGTCTTTTCGCACCATATTTAGATCTGCCCCTTTTTCGACC
Found at i:138557 original size:2 final size:2
Alignment explanation
Indices: 138550--138579 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
138540 TGGCTATTAC
*
138550 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
138580 CTCAAACTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 138050 -- 138549
TATCTATCTCTCAGGATCGGGTAAATCCATTCATTCCTAATAGCATAGCGGGGGGGGATAAAGAC
ACAATAGGTCCAAAACCCAACCATTTGGTGAATCGTGGAACGCATCTAATGACTCTGTTCCTTCC
AACCCCCAAATAGAGGGATTTTAATACTACCACCGTACTTGCATCCTCCACTTAACAGCCCCTAT
TGAATGGAGAATGGGGCATTGCAAGGATGGATGGTCGCAAAGCTGACATTCCAGTTCCAAAACTG
ACCTTCAAGTGGTGCATCAAAGCCAAAGGCAGGTTGCAGGTTCGTCAGAGTAGCTCTCTGTTCCC
ATTTCTCGCTTCACCGCGTTTCGAGATCAAAGTGATCTTGAGTTCACGAGAACGAGGAATGATAG
CAAAAGGTTCCTATTGGTGTTTCTCTTCTGAGCCCGCGGAGATAAAACCAACCTCCCGGGCCGGG
GGATCAAATCATTTCGAGTGTGAGAAGCATGACGATGGCTATTAC
Right flanking sequence: Indices 138580 -- 139079
CTCAAACTGGATGTAGCTATGCTTCTGGGTCTCTAAAGCTGCTCTCCCATCTGGAACACCCGTCT
TATCTACATCATGGTATACATCAGTCCTCTTACCATAGTTCTAGTTGACGAATCGCGTAGCAGTT
CGACAATGGATAGGTAATCGGGTTCGGTGGGCCAGGTTATTCCCATTTCGCAGCATGCAGCTCAT
GCCGGGGGTTCCAAAGAGCCGGCCGAAGGCAGTCGTCATTTTTATCCCGGAAGAGCTCGATCCAG
CCCTCGGTCACCATTTATAAGCTTACTATAAGCTCGATATGTAAAAGAATAGCTCAGCTAAGTGG
CAGAACGTGCACGAACCGGGCATATCATATTTCATGCAGGATCACTGAAGCCGAAGAAATCACGA
TGATATTTCTGCGTCAGTGTAGTATAAGACTGCGATGATCAAATCTGTATCGGAAAGTTGGTCAT
GCTTTACCCGCGCATTAAAGTAGTTCTGTTTCCCCCCCAATATAA
Found at i:142164 original size:18 final size:18
Alignment explanation
Indices: 142141--142177 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
142131 GCTACTTAAG
* *
142141 TTTAGGGGCAGTAGCCGC
1 TTTAGGAGCAGTACCCGC
142159 TTTAGGAGCAGTACCCGC
1 TTTAGGAGCAGTACCCGC
142177 T
1 T
142178 ACGTAACCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.24
Consensus pattern (18 bp):
TTTAGGAGCAGTACCCGC
Left flanking sequence: Indices 141641 -- 142140
GAATTTACCAGTACCAAACACCATAGAAATTCTCTTCCACTGCTATTTTGAAATCAACCCACGTT
TGGCCAGTCTTCGTTACACAAGGCGGCATGGCGAGGCACATGTTACTTCTTGATGGGGGGGGAAC
GGCATGGCAAGGCCCTTACAACATAAGGCATGCATGGGAAGGCATATACTGACTGACATAAGGAG
GGCACGTTATAGGCGGACCTATTTTATAAAGTGTAAGGACCTTCTGGTACGTGAGAACCTGACCT
TATAGCTCTCTCTGCTGGCTGGCTTGCTGGTTGGTGGGCAGGCTGACTGGTGGTGGAAGGGGTAC
CTTTTAGGTTAATTTAGAGGTAGCATCATGAAACCACGAATAGAATCGATTGATTATCTAATCTG
TTAATAAAGAGGTCGCACCATGAAGAAGCCCATTCCCTTTCATGGAGGATGGGGGGTTTTACCTG
TTAGGTATAGGAGCTGTCCCCGCAACGTAACCCATGCTACTTAAG
Right flanking sequence: Indices 142178 -- 142677
ACGTAACCCCCGCTACCATCGCTACCACGTTACCATTTCCTTCCATCGCGCCAAGAAAGAAACCC
CCACACCCCCCCTTAGGGGGGCATTCCCTACCGAAATGAATCAATGCAGGAATGAATGGGTTAAG
CTAGAGGAGGAATGGGTCAAGCTATAGGTAGAAAAGCAGGAATGAATGGGGAAAGCGCTACTTAG
TGGGCGCATCGAAACGCTAGCTGGTTGGCTAATACGTCTATCCTTTCTGCTGCTTTAAATCACCA
ATAAAGATATAGATCCATCTTTACCCTTTACTTTCAGACGGGACAGGGCTCATTCCCCCGGAGAA
TTACCCCCGCAGGGGGAATGAGCCCTTCACCCAAATAGGCCATCTCGGGAAGTAATGGTTATAGC
TCAGACGCATGAAACAATGAACGAATAGCCTCGCCCCAATAGATAGATAGATAGATAGACAGATA
GCCCCACCCAATAGATGAACGTAACCTAAGGAGGGAAGAACTGGT
Found at i:142720 original size:13 final size:13
Alignment explanation
Indices: 142702--142727 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
142692 TGTGTTTAAC
142702 CTGGGATTATTGT
1 CTGGGATTATTGT
142715 CTGGGATTATTGT
1 CTGGGATTATTGT
142728 GTGGTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.31, T:0.46
Consensus pattern (13 bp):
CTGGGATTATTGT
Left flanking sequence: Indices 142202 -- 142701
CCACGTTACCATTTCCTTCCATCGCGCCAAGAAAGAAACCCCCACACCCCCCCTTAGGGGGGCAT
TCCCTACCGAAATGAATCAATGCAGGAATGAATGGGTTAAGCTAGAGGAGGAATGGGTCAAGCTA
TAGGTAGAAAAGCAGGAATGAATGGGGAAAGCGCTACTTAGTGGGCGCATCGAAACGCTAGCTGG
TTGGCTAATACGTCTATCCTTTCTGCTGCTTTAAATCACCAATAAAGATATAGATCCATCTTTAC
CCTTTACTTTCAGACGGGACAGGGCTCATTCCCCCGGAGAATTACCCCCGCAGGGGGAATGAGCC
CTTCACCCAAATAGGCCATCTCGGGAAGTAATGGTTATAGCTCAGACGCATGAAACAATGAACGA
ATAGCCTCGCCCCAATAGATAGATAGATAGATAGACAGATAGCCCCACCCAATAGATGAACGTAA
CCTAAGGAGGGAAGAACTGGTACCTTTGAGTTTTTTGTGTTTAAC
Right flanking sequence: Indices 142728 -- 143227
GTGGTTTTAACCTGGGATTATCGCCCGGATATGAGCGCGGAGTTCTCTAGCAAATTCTATAGCAA
ACTCCGAAGTTTCTTCAAACAATCTTAGGGGCGGGGGAGCCACTAATGAGGAAGGACTTATGAAC
TCAGAACTTTTAGAGAGAACCAAATAAAGATCAATACGAAAAGGTCAATCTTACCTTATTCGGGT
TCAAGTGGGGCTACAGCGCGCTAAAATGGCCATAGAATTTGGCTTCTGAGCCTTTGGTGGGACCA
ACAAATGAGCCCTGATAAGGGTTCAAGTGGCGCTACAGCGCGCTAAAATGGCCATAGAATTGGTC
CGGGGTTTCAGAAAGTAAGCTTATTTCAGAGGCACTTGCGCTTGGCTTGAGGAAGGGCAGTGAGA
GGGTCTGCGTGGGATAGCGAGGTGGTAACCGTAAGAGCGCTCGAAGGAGTCTGATGATGGGAGTG
CCCTTCGAAGGAGGAAAAGCCCCTTGCTAAGAGTACCCGAATATT
Found at i:148522 original size:12 final size:12
Alignment explanation
Indices: 148505--148529 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
148495 GCGATCCCTT
148505 GTAAGAAGGCAA
1 GTAAGAAGGCAA
148517 GTAAGAAGGCAA
1 GTAAGAAGGCAA
148529 G
1 G
148530 CAAGGTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.36, T:0.08
Consensus pattern (12 bp):
GTAAGAAGGCAA
Left flanking sequence: Indices 148005 -- 148504
CCGTTATGGTAGTACTGGTAATTATCAACGCTAATAGTAGTTTAGGAACAAATGTAGTGCTAGTA
AAGATCCAACGACAATATTTAGCTCTCTTCCCCATGTTGTGGTTTGTGCCCCATATGTAGTGGTG
GGCAGTTCCCTATACGGTGGCTCACCATGTGGAGGTTCTTCCGCCGTTGGTTATCCTGTAGAGTG
CTGGTCCAGCTATTTCTAGTCCTCTATAGATTTATAAATAAAATAATTTCTGTAGATAAAAAAGC
TATAAAAGTACCCCGACGAGGATTGATCTATCTGGGCATCAAATCGTTTCATTTATTGCCCGTAA
GTAGCCATTTGAGTCTTTTCTCATAGAAGGATAGTGACTCCGCCTGCCCCTAAAGGCTAGCTTGG
AGTTCTTTTCCTTCCCCTTCCCCTTCTTGAGTCCCCTCCTTGATAAGCCACACCTATTTCGATAA
GCCACACCTACGATGGTTAGGTAGGCTTGGAACTAGCGATCCCTT
Right flanking sequence: Indices 148530 -- 149029
CAAGGTTATACCTTTCCTGAACTGGTAGAATAGGTCGATCAGTTTAGGTAAATTATTAAATGATT
CCTTCCCCGATCTATAGTGGGTAGGGATGGGACCAATGGGTTAGGCCCTTGCTTGGTGGGAAGGT
CCTGGATCTTTCCTGAACGCTTGGGCCCGACCTCCGGAGGACACAACTGACTGATGATGGGACTA
ACCTGCACCTGGTACTGAGACTGATTTACTTAGAATGGAACTGACTGATGAGCGGTAAGGGTGGG
AGAATGAGCTAGGCCGACCTTCCCTGAAGTGGGAGAGCTAGGCCGAACTTCCCTCTCCTCGATCG
CTTTGGTATGATTCTTCGATCGTACCTTGCTGAAGGGCCTTCCTTCATAGGCACAGGCCGATGGA
AACTAACTTCCTTCTGTCGACGGTTTCTTGCTGCATATCAGATCGATGAAGTCTTTCAGTTAGAT
GTAGTATAACTTCCTCTACAGTTCGCTGATTTACGGGTGGTGGGA
Found at i:154384 original size:17 final size:18
Alignment explanation
Indices: 154346--154384 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
154336 TCTGTAGCTT
154346 ATAATAATGGCTAAAGCTGA
1 ATAATAATGGCTAAA-C-GA
154366 ATAATAATGGCTAAA-GA
1 ATAATAATGGCTAAACGA
154383 AT
1 AT
154385 TATTAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
20 15 0.79
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (18 bp):
ATAATAATGGCTAAACGA
Left flanking sequence: Indices 153846 -- 154345
CCGACCAAGTCAATAAGTAAGTGGCCTCACGGAGGTTTTCCTTCTGATCCTACTATTATTTTGCT
AAAGGCTGCGTCCTGGGTGCCATGAAAATAAGCGAGGAGGTACTTCCCTAACATCCACAAGTACA
GGCATGAACACCCTAGTTCTGTATTTAAGGGCTAAAGCCTTACCTCATATTAGGAGGTATTAACT
GCACAAATGTTGTGAAAGAAGAAGGAAGATAGAGGATTAAGGAAGATAGAGGAGCGTCATGAACA
CCATTGTAAGATTTTATATTACACGGATTAGCTGGCTACCGTTCGTTGCGTTATTAGCTAGCATT
TCAAAGGTATTGGCGTAAGCTGTATAACGTAAGCTGTATTACGATAGACAGATTAGACGGATTAG
ATAGACGGATTATATTATGAGGTATCGGCGCCCCCGCATGAACAGTTCTAGAATTGAAAGACTTT
ATTAGCGATATCCATTCTGTAGCTTAGAGTTAAAGTCTGTAGCTT
Right flanking sequence: Indices 154385 -- 154884
TATTAAAAGAGCCGTCATGAACCAATTAACATGAGCCAATTCACATGAGCGGAACAAGACAAGGG
GGATCTCGATTGTCTGACTTTCCTTCTCTTAACCGCCATGAACAGATGTGAATGAAACGGATTAG
ATTAGACCGATTAGTGAGATATGCCAATTCGTATTAGCTTTTTGTATTAGCAGGCTAACGGCTAC
AGTAGTGGCTGTACAGTAGTTGCTGGCTACCGTTCGTATTAGATGATAGCGAGATTGGATTAGCA
CAATTGGATGATAGCAATAAATATTAGATATGACTTTCAGGATTAAGGGTGTAAGTCAGAAGCCG
CGATAAGTACCACGATAAGTATGGCCACGATCAGATTAGATATCGGATATGCCACGATAAGTTTA
TATATGCCACGATACTTTAGCTGGCTACCGTTGCGTTCGTTCTGAGCGGCTTTGCGTTCTGAGCT
GGCTACCGTTGTGTTCTGACAAGAGCCGTTCTGAACGGGCAATTC
Found at i:154423 original size:14 final size:14
Alignment explanation
Indices: 154400--154434 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
154390 AAAGAGCCGT
*
154400 CATGAACCAATTAA
1 CATGAGCCAATTAA
*
154414 CATGAGCCAATTCA
1 CATGAGCCAATTAA
154428 CATGAGC
1 CATGAGC
154435 GGAACAAGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.26, G:0.14, T:0.20
Consensus pattern (14 bp):
CATGAGCCAATTAA
Left flanking sequence: Indices 153900 -- 154399
ATTATTTTGCTAAAGGCTGCGTCCTGGGTGCCATGAAAATAAGCGAGGAGGTACTTCCCTAACAT
CCACAAGTACAGGCATGAACACCCTAGTTCTGTATTTAAGGGCTAAAGCCTTACCTCATATTAGG
AGGTATTAACTGCACAAATGTTGTGAAAGAAGAAGGAAGATAGAGGATTAAGGAAGATAGAGGAG
CGTCATGAACACCATTGTAAGATTTTATATTACACGGATTAGCTGGCTACCGTTCGTTGCGTTAT
TAGCTAGCATTTCAAAGGTATTGGCGTAAGCTGTATAACGTAAGCTGTATTACGATAGACAGATT
AGACGGATTAGATAGACGGATTATATTATGAGGTATCGGCGCCCCCGCATGAACAGTTCTAGAAT
TGAAAGACTTTATTAGCGATATCCATTCTGTAGCTTAGAGTTAAAGTCTGTAGCTTATAATAATG
GCTAAAGCTGAATAATAATGGCTAAAGAATTATTAAAAGAGCCGT
Right flanking sequence: Indices 154435 -- 154934
GGAACAAGACAAGGGGGATCTCGATTGTCTGACTTTCCTTCTCTTAACCGCCATGAACAGATGTG
AATGAAACGGATTAGATTAGACCGATTAGTGAGATATGCCAATTCGTATTAGCTTTTTGTATTAG
CAGGCTAACGGCTACAGTAGTGGCTGTACAGTAGTTGCTGGCTACCGTTCGTATTAGATGATAGC
GAGATTGGATTAGCACAATTGGATGATAGCAATAAATATTAGATATGACTTTCAGGATTAAGGGT
GTAAGTCAGAAGCCGCGATAAGTACCACGATAAGTATGGCCACGATCAGATTAGATATCGGATAT
GCCACGATAAGTTTATATATGCCACGATACTTTAGCTGGCTACCGTTGCGTTCGTTCTGAGCGGC
TTTGCGTTCTGAGCTGGCTACCGTTGTGTTCTGACAAGAGCCGTTCTGAACGGGCAATTCACATG
AGCGAAAGATCGAGATTGTCTAACTTTCTTTCTCTTAACCGCCAT
Found at i:159354 original size:10 final size:10
Alignment explanation
Indices: 159339--159365 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
159329 CTAGATTTGA
159339 TTGATTGGAT
1 TTGATTGGAT
159349 TTGATTGGAT
1 TTGATTGGAT
159359 TTGATTG
1 TTGATTG
159366 ATACATACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (10 bp):
TTGATTGGAT
Left flanking sequence: Indices 158839 -- 159338
GATGGGAAACAGCATGATTCATTCGATTGGAACAATGTCATAATACCTCCGACAAAGCAAAGGTC
AAAGTCTCCGAGCACTAGCCTACTACAGTCAGGTTATGAAGCAGCCAAACCAAGGATAATTCGAT
TTCTTCAAAATGAAAGATCTACTCTAGCACAAAGATGGGAATGGAAGAAGGACCGAAGTTTAGAT
ATAAGACTGACTGCTACAACTCGGTGAACGGGAGACCAGTATATAGTTCCCATCGTAGCGGTTAT
GGGAGTGGCTAATGGGTCTGCAGCATTCATATCTTCCATCTGGATGTAGGTAGTTTCCATTCAGG
TTGTCCCTGGATATTGAGTTGAGTGCTCGCCTTTACCCACTCCGAAACTCTTGTGGTTCCATTCC
GCCCCGGGCGAGGCATTTATGTGCCTAAGTTACAAAATTGAACATGGTTGGTTATTATACGTTGA
TGCGCCACCTCTTGATTTGAGATAGATAGGCCTTGCTAGATTTGA
Right flanking sequence: Indices 159366 -- 159865
ATACATACCGCCTACCTGATGAGAGGGGGGCACAATTGGACAGTTGCGTTAGTGCGCTTACAGGA
GCGGGCACACAACTGGTACGAATAGATGCCCTTTCACTTGATTGATTGATTCATTTGTAGCCTTC
TGAGAGCAGCCAGAGCCCGATGATGAGAGGGGTGCACAGACGGACAGTACACCAGTCGATTTACA
GCATGCTGTTACTTACGTTGCACCATGATAGGAACAGAGGTGAGTCCAATCAATGTTGAGAGGAG
CTGAGTACAATTTATGATTTATTTTGAAGAGCTGGATTATTTTGATTATGCCCCTTAGGATTATG
CCACCCATGAGTCCTCTGCCCACCCATTCCCCATCGATATGATGCCAGGAGAAGAAGAGCCCACC
TATCCATATAACAATGATGCCAGAAGTCCCAAGAGCCCTCCTCTCAATTACAGCCCATCTAAGGA
AGGATGGAAGGAAGGAGCCTGTTGCCTAATAATTTGAGCCAAGCA
Found at i:162507 original size:18 final size:18
Alignment explanation
Indices: 162484--162540 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
162474 GGCTGGGCTC
162484 CTGGGCTTTTATAAGAGG
1 CTGGGCTTTTATAAGAGG
** **
162502 CTGGGCTACTCGAAGAGG
1 CTGGGCTTTTATAAGAGG
162520 CTGGGCTTTTATAAGAGG
1 CTGGGCTTTTATAAGAGG
162538 CTG
1 CTG
162541 ATTGACTCGG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.21, C:0.16, G:0.35, T:0.28
Consensus pattern (18 bp):
CTGGGCTTTTATAAGAGG
Left flanking sequence: Indices 161984 -- 162483
AAGGCGCAAAACCTCAAAGCAATCGATAGCATCCCGCCAAACATGGGGAAACGTCGTGAAAAGGC
ATAGTTCGGTAATAAAAAAATCCATTTCTGTGCCCGGATGAGTGATTGGCCTCCCTAAGGATGAG
ATTTGAATATACAAAAACAGCGAATGAGAAGGATCGTAGAGATCTGTTCTAACAAAACTTAGTGC
CTGCTCTGAACTAGGCAATCAATCATTGGTGCTCTTATCTCGCGAAGCATCCTTAGCTTTGGCTT
TTAGGCTGAGTTGGGACCCTCGCTGGATGGGATAAAGAACCAAGGGCTGGCCGAAGAATACGGGC
TTGGATCGCTTCAACTTAGATAGAGATGCCTGCCCTCTACCGCCCTAGAGATTTGATCTTGATGC
TCACCTGCACCCGGGCCTCGAATTTACTACTTGAAGATCAGTAAGGAAGGTTAGGAAGTGGGAAT
GAATGAATGGCTTCAGTGAATGGATTCTATGTCTGGGCTGGGCTC
Right flanking sequence: Indices 162541 -- 163040
ATTGACTCGGCTACTCGACTGGGCTAAGAGGCTTGGATACCGGGCGAAAGGGCGGGGCTAAGAAA
GAAAGAGGCTTGGCTACTTGGCTGGAGAGATATTGATTGATTGGATTGCCAACAGAGAGAGATAG
ACCGGTGGAAGGAAAAGAAACGAAACAAAGAACCAGAGGAAGGCCCTTTAGCTCTAACTCTACCT
CTCTATACCGATAGCTACCGATACTCTCTCTAACCTCTCTACGCTCTAACCTAGGCCCTCTAAAC
TCATCCTTAACCTCATCCTTCACCTCATCCCTAGACTCGAGATCCTATGCCATCCATCCTATGCC
CTACATCCTATGCCTTTGATCCCTATACCAATATTCCTATAGCTATACCTATACGTGAAGCATAT
AGACGTGAAGCATATAGACGTGATATAGACGTTCAGTTCAATCCATGAGAAACAGATATTCAGTG
AAATGAAAGCATACACGTTATGTTCAATCCATGAAAGACAGATAT
Found at i:162817 original size:12 final size:12
Alignment explanation
Indices: 162800--162830 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
162790 GCCCTCTAAA
162800 CTCATCCTTAAC
1 CTCATCCTTAAC
*
162812 CTCATCCTTCAC
1 CTCATCCTTAAC
162824 CTCATCC
1 CTCATCC
162831 CTAGACTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.48, G:0.00, T:0.32
Consensus pattern (12 bp):
CTCATCCTTAAC
Left flanking sequence: Indices 162300 -- 162799
AATACGGGCTTGGATCGCTTCAACTTAGATAGAGATGCCTGCCCTCTACCGCCCTAGAGATTTGA
TCTTGATGCTCACCTGCACCCGGGCCTCGAATTTACTACTTGAAGATCAGTAAGGAAGGTTAGGA
AGTGGGAATGAATGAATGGCTTCAGTGAATGGATTCTATGTCTGGGCTGGGCTCCTGGGCTTTTA
TAAGAGGCTGGGCTACTCGAAGAGGCTGGGCTTTTATAAGAGGCTGATTGACTCGGCTACTCGAC
TGGGCTAAGAGGCTTGGATACCGGGCGAAAGGGCGGGGCTAAGAAAGAAAGAGGCTTGGCTACTT
GGCTGGAGAGATATTGATTGATTGGATTGCCAACAGAGAGAGATAGACCGGTGGAAGGAAAAGAA
ACGAAACAAAGAACCAGAGGAAGGCCCTTTAGCTCTAACTCTACCTCTCTATACCGATAGCTACC
GATACTCTCTCTAACCTCTCTACGCTCTAACCTAGGCCCTCTAAA
Right flanking sequence: Indices 162831 -- 163330
CTAGACTCGAGATCCTATGCCATCCATCCTATGCCCTACATCCTATGCCTTTGATCCCTATACCA
ATATTCCTATAGCTATACCTATACGTGAAGCATATAGACGTGAAGCATATAGACGTGATATAGAC
GTTCAGTTCAATCCATGAGAAACAGATATTCAGTGAAATGAAAGCATACACGTTATGTTCAATCC
ATGAAAGACAGATATTCAGTGAAATGAAAGACATGAAATTCAGTTTAATCCATTAGAAATAGATA
GATGTGAAGTGTTAACATGAAGTGAAGTGTGAAAACAATATATCTCTCTATACCGATCTATATAG
ATCTATAAATCTATACATCTCTATACAATACTATATCTCTCTATACCGATCTATATACCAATCTA
TATAGATCTATAAATCTATACATCTCTATACAATACTATATATACCTGTGAGACTGAGCGTTCAA
GGGCACGGATGCCTTCGAACGGATGCCACATGCGGCCAGCTAATG
Found at i:162887 original size:14 final size:14
Alignment explanation
Indices: 162842--162879 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
162832 TAGACTCGAG
*
162842 ATCCTATGCCATCC
1 ATCCTATGCCATAC
*
162856 ATCCTATGCCCTAC
1 ATCCTATGCCATAC
162870 ATCCTATGCC
1 ATCCTATGCC
162880 TTTGATCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.42, G:0.08, T:0.29
Consensus pattern (14 bp):
ATCCTATGCCATAC
Left flanking sequence: Indices 162342 -- 162841
CCTCTACCGCCCTAGAGATTTGATCTTGATGCTCACCTGCACCCGGGCCTCGAATTTACTACTTG
AAGATCAGTAAGGAAGGTTAGGAAGTGGGAATGAATGAATGGCTTCAGTGAATGGATTCTATGTC
TGGGCTGGGCTCCTGGGCTTTTATAAGAGGCTGGGCTACTCGAAGAGGCTGGGCTTTTATAAGAG
GCTGATTGACTCGGCTACTCGACTGGGCTAAGAGGCTTGGATACCGGGCGAAAGGGCGGGGCTAA
GAAAGAAAGAGGCTTGGCTACTTGGCTGGAGAGATATTGATTGATTGGATTGCCAACAGAGAGAG
ATAGACCGGTGGAAGGAAAAGAAACGAAACAAAGAACCAGAGGAAGGCCCTTTAGCTCTAACTCT
ACCTCTCTATACCGATAGCTACCGATACTCTCTCTAACCTCTCTACGCTCTAACCTAGGCCCTCT
AAACTCATCCTTAACCTCATCCTTCACCTCATCCCTAGACTCGAG
Right flanking sequence: Indices 162880 -- 163379
TTTGATCCCTATACCAATATTCCTATAGCTATACCTATACGTGAAGCATATAGACGTGAAGCATA
TAGACGTGATATAGACGTTCAGTTCAATCCATGAGAAACAGATATTCAGTGAAATGAAAGCATAC
ACGTTATGTTCAATCCATGAAAGACAGATATTCAGTGAAATGAAAGACATGAAATTCAGTTTAAT
CCATTAGAAATAGATAGATGTGAAGTGTTAACATGAAGTGAAGTGTGAAAACAATATATCTCTCT
ATACCGATCTATATAGATCTATAAATCTATACATCTCTATACAATACTATATCTCTCTATACCGA
TCTATATACCAATCTATATAGATCTATAAATCTATACATCTCTATACAATACTATATATACCTGT
GAGACTGAGCGTTCAAGGGCACGGATGCCTTCGAACGGATGCCACATGCGGCCAGCTAATGAAAG
GAAGGATATTGATTCTTGACAGAAGGGAATAAAATGATGGTATAG
Found at i:162938 original size:15 final size:15
Alignment explanation
Indices: 162918--162953 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
162908 CTATACCTAT
162918 ACGTGAAGCATATAG
1 ACGTGAAGCATATAG
162933 ACGTGAAGCATATAG
1 ACGTGAAGCATATAG
162948 ACGTGA
1 ACGTGA
162954 TATAGACGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.39, C:0.14, G:0.28, T:0.19
Consensus pattern (15 bp):
ACGTGAAGCATATAG
Left flanking sequence: Indices 162418 -- 162917
GGAAGGTTAGGAAGTGGGAATGAATGAATGGCTTCAGTGAATGGATTCTATGTCTGGGCTGGGCT
CCTGGGCTTTTATAAGAGGCTGGGCTACTCGAAGAGGCTGGGCTTTTATAAGAGGCTGATTGACT
CGGCTACTCGACTGGGCTAAGAGGCTTGGATACCGGGCGAAAGGGCGGGGCTAAGAAAGAAAGAG
GCTTGGCTACTTGGCTGGAGAGATATTGATTGATTGGATTGCCAACAGAGAGAGATAGACCGGTG
GAAGGAAAAGAAACGAAACAAAGAACCAGAGGAAGGCCCTTTAGCTCTAACTCTACCTCTCTATA
CCGATAGCTACCGATACTCTCTCTAACCTCTCTACGCTCTAACCTAGGCCCTCTAAACTCATCCT
TAACCTCATCCTTCACCTCATCCCTAGACTCGAGATCCTATGCCATCCATCCTATGCCCTACATC
CTATGCCTTTGATCCCTATACCAATATTCCTATAGCTATACCTAT
Right flanking sequence: Indices 162954 -- 163453
TATAGACGTTCAGTTCAATCCATGAGAAACAGATATTCAGTGAAATGAAAGCATACACGTTATGT
TCAATCCATGAAAGACAGATATTCAGTGAAATGAAAGACATGAAATTCAGTTTAATCCATTAGAA
ATAGATAGATGTGAAGTGTTAACATGAAGTGAAGTGTGAAAACAATATATCTCTCTATACCGATC
TATATAGATCTATAAATCTATACATCTCTATACAATACTATATCTCTCTATACCGATCTATATAC
CAATCTATATAGATCTATAAATCTATACATCTCTATACAATACTATATATACCTGTGAGACTGAG
CGTTCAAGGGCACGGATGCCTTCGAACGGATGCCACATGCGGCCAGCTAATGAAAGGAAGGATAT
TGATTCTTGACAGAAGGGAATAAAATGATGGTATAGGCTTATATCCTATAATAGGGAAGGGATAA
GGGCGTTCAAGGGCGAGGGCGTGCTGCGTGCTCAAGGCAGATTGA
Found at i:163076 original size:51 final size:51
Alignment explanation
Indices: 162962--163090 Score: 158
Period size: 51 Copynumber: 2.5 Consensus size: 51
162952 GATATAGACG
*
162962 TTCAGTTCAATCCATGAGAAACAGATATTCAGTGAAATGAAAGCATACACG
1 TTCAGTTCAATCCATGAGAAACAGATATTCAGTGAAATGAAAGCATACACA
163013 TT-ATGTTCAATCCATGA-AAGACAGATATTCAGTGAAATGAAAGACATGA-A-A
1 TTCA-GTTCAATCCATGAGAA-ACAGATATTCAGTGAAATGAAAG-CAT-ACACA
* * *
163064 TTCAGTTTAATCCATTAGAAATAGATA
1 TTCAGTTCAATCCATGAGAAACAGATA
163091 GATGTGAAGT
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
50 3 0.04
51 57 0.84
52 7 0.10
53 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (51 bp):
TTCAGTTCAATCCATGAGAAACAGATATTCAGTGAAATGAAAGCATACACA
Left flanking sequence: Indices 162462 -- 162961
ATTCTATGTCTGGGCTGGGCTCCTGGGCTTTTATAAGAGGCTGGGCTACTCGAAGAGGCTGGGCT
TTTATAAGAGGCTGATTGACTCGGCTACTCGACTGGGCTAAGAGGCTTGGATACCGGGCGAAAGG
GCGGGGCTAAGAAAGAAAGAGGCTTGGCTACTTGGCTGGAGAGATATTGATTGATTGGATTGCCA
ACAGAGAGAGATAGACCGGTGGAAGGAAAAGAAACGAAACAAAGAACCAGAGGAAGGCCCTTTAG
CTCTAACTCTACCTCTCTATACCGATAGCTACCGATACTCTCTCTAACCTCTCTACGCTCTAACC
TAGGCCCTCTAAACTCATCCTTAACCTCATCCTTCACCTCATCCCTAGACTCGAGATCCTATGCC
ATCCATCCTATGCCCTACATCCTATGCCTTTGATCCCTATACCAATATTCCTATAGCTATACCTA
TACGTGAAGCATATAGACGTGAAGCATATAGACGTGATATAGACG
Right flanking sequence: Indices 163091 -- 163590
GATGTGAAGTGTTAACATGAAGTGAAGTGTGAAAACAATATATCTCTCTATACCGATCTATATAG
ATCTATAAATCTATACATCTCTATACAATACTATATCTCTCTATACCGATCTATATACCAATCTA
TATAGATCTATAAATCTATACATCTCTATACAATACTATATATACCTGTGAGACTGAGCGTTCAA
GGGCACGGATGCCTTCGAACGGATGCCACATGCGGCCAGCTAATGAAAGGAAGGATATTGATTCT
TGACAGAAGGGAATAAAATGATGGTATAGGCTTATATCCTATAATAGGGAAGGGATAAGGGCGTT
CAAGGGCGAGGGCGTGCTGCGTGCTCAAGGCAGATTGATTGATGGCATAAGGGCGGGAGTCTGTA
TCGCCTCTTAATCCATCTTTTATCAAACTTGCCTCACCCCAATAGGCATATTTATGCTTCGGTAA
GTGTTACGTGATGGTCTAAGTGTTACGTTATATCCATATACATAT
Found at i:163196 original size:20 final size:19
Alignment explanation
Indices: 163129--163211 Score: 71
Period size: 20 Copynumber: 4.3 Consensus size: 19
163119 GTGAAAACAA
*
163129 TATATCTCTCTATACCGATC
1 TATATCTCTCTATA-CAATC
***
163149 TATATAGATCTATA-AATC
1 TATATCTCTCTATACAATC
163167 TATA-CATCTCTATACAATAC
1 TATATC-TCTCTATACAAT-C
*
163187 TATATCTCTCTATACCGATC
1 TATATCTCTCTATA-CAATC
163207 TATAT
1 TATAT
163212 ACCAATCTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
18 13 0.26
19 3 0.06
20 30 0.60
21 4 0.08
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.40
Consensus pattern (19 bp):
TATATCTCTCTATACAATC
Left flanking sequence: Indices 162629 -- 163128
GGAGAGATATTGATTGATTGGATTGCCAACAGAGAGAGATAGACCGGTGGAAGGAAAAGAAACGA
AACAAAGAACCAGAGGAAGGCCCTTTAGCTCTAACTCTACCTCTCTATACCGATAGCTACCGATA
CTCTCTCTAACCTCTCTACGCTCTAACCTAGGCCCTCTAAACTCATCCTTAACCTCATCCTTCAC
CTCATCCCTAGACTCGAGATCCTATGCCATCCATCCTATGCCCTACATCCTATGCCTTTGATCCC
TATACCAATATTCCTATAGCTATACCTATACGTGAAGCATATAGACGTGAAGCATATAGACGTGA
TATAGACGTTCAGTTCAATCCATGAGAAACAGATATTCAGTGAAATGAAAGCATACACGTTATGT
TCAATCCATGAAAGACAGATATTCAGTGAAATGAAAGACATGAAATTCAGTTTAATCCATTAGAA
ATAGATAGATGTGAAGTGTTAACATGAAGTGAAGTGTGAAAACAA
Right flanking sequence: Indices 163212 -- 163711
ACCAATCTATATAGATCTATAAATCTATACATCTCTATACAATACTATATATACCTGTGAGACTG
AGCGTTCAAGGGCACGGATGCCTTCGAACGGATGCCACATGCGGCCAGCTAATGAAAGGAAGGAT
ATTGATTCTTGACAGAAGGGAATAAAATGATGGTATAGGCTTATATCCTATAATAGGGAAGGGAT
AAGGGCGTTCAAGGGCGAGGGCGTGCTGCGTGCTCAAGGCAGATTGATTGATGGCATAAGGGCGG
GAGTCTGTATCGCCTCTTAATCCATCTTTTATCAAACTTGCCTCACCCCAATAGGCATATTTATG
CTTCGGTAAGTGTTACGTGATGGTCTAAGTGTTACGTTATATCCATATACATATCAGGGTCTTCA
TTAAGTGTTACGATTTCACCTCACTTCGATAACTTATAGGAATGGTCAAAGAGCTATTTAGAATC
TCCCTCACTCTTTAGAATCTCCCTCACTCTCGGGGGCATGAAGTA
Found at i:163682 original size:19 final size:19
Alignment explanation
Indices: 163658--163696 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
163648 CAAAGAGCTA
163658 TTTAGAATCTCCCTCACTC
1 TTTAGAATCTCCCTCACTC
163677 TTTAGAATCTCCCTCACTC
1 TTTAGAATCTCCCTCACTC
163696 T
1 T
163697 CGGGGGCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.05, T:0.38
Consensus pattern (19 bp):
TTTAGAATCTCCCTCACTC
Left flanking sequence: Indices 163158 -- 163657
CTATAAATCTATACATCTCTATACAATACTATATCTCTCTATACCGATCTATATACCAATCTATA
TAGATCTATAAATCTATACATCTCTATACAATACTATATATACCTGTGAGACTGAGCGTTCAAGG
GCACGGATGCCTTCGAACGGATGCCACATGCGGCCAGCTAATGAAAGGAAGGATATTGATTCTTG
ACAGAAGGGAATAAAATGATGGTATAGGCTTATATCCTATAATAGGGAAGGGATAAGGGCGTTCA
AGGGCGAGGGCGTGCTGCGTGCTCAAGGCAGATTGATTGATGGCATAAGGGCGGGAGTCTGTATC
GCCTCTTAATCCATCTTTTATCAAACTTGCCTCACCCCAATAGGCATATTTATGCTTCGGTAAGT
GTTACGTGATGGTCTAAGTGTTACGTTATATCCATATACATATCAGGGTCTTCATTAAGTGTTAC
GATTTCACCTCACTTCGATAACTTATAGGAATGGTCAAAGAGCTA
Right flanking sequence: Indices 163697 -- 164196
CGGGGGCATGAAGTACTTACCTCACTTTCCCTTTGGGCCATATGAGCTCTACTCTTAATATTCTC
TTTTATTTGTGCAGCGAGCGGAAGCGAACTATAAAACACATCGGTAATGCGACCGAACGGGAGCT
AAGGAACCAGTTACTAAGGTGGATGGAAGGAAAGCGAAGAAGCATAATCTCGGGTTAGTTGAGCT
CTGAAGCCGTCAAGTTCTTCGGTTGTCGTCCTCCGGACAACCTCTCCCAAAAACATGTAGTAGGC
TGTTAATAAATAAACCGCAAGCATTCCTCCGAGGTTGAGCCAAGTTGTAAACAGACAAGAGAGAT
GTTCCCCCATATACAATCTTACCGCTACGGAAAAGTAGTCATTCTCTTCCTAATTTGCTCCTAAG
GGATCCGAAAGGGCTTGGAGAATCGATAGTAATTCCAGAGAAATGCAGGTGGATCAACAACTGGA
TATGGACCTGCTACTGAGGCTACAGTAACCCACCCTTGCATATGA
Found at i:168663 original size:16 final size:17
Alignment explanation
Indices: 168631--168664 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
168621 TTGCTACTTG
168631 GCTTGGCATACTAAACT
1 GCTTGGCATACTAAACT
*
168648 GCTTGGC-TACTCAACT
1 GCTTGGCATACTAAACT
168664 G
1 G
168665 GGATGGTGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (17 bp):
GCTTGGCATACTAAACT
Left flanking sequence: Indices 168131 -- 168630
CACCTGTTTAGCATCATGCGCCAGACACATAGTTCATTCACGCAAGCCAGGTAGTTACATTCAGG
GGGGGTTGGTTCTTTAACGCAGATCCGGTAGTTTCTTCCTTCATGCAGGTCCAGTAGTTTAATTC
ACGCTAGGAAGGGGGGTAGGTGAGTGGGTGACCCAGAAAGTTCTTTATTGGGGGCCCCTTCGAGA
TGGGTGGTGCAAAGGACTAGGGTTTCAAGCCGGAGTGGGATAACGGGCGGATGAATGAGGAGGCC
TAGCCGCGAGGACTAGATAATCGTTCCCGGGAGGTCCTTGCCTAGAGCAGCAGGCATACAATGAA
CTCTACCTCGACCTCGACGGAACCACAGCCCTCGACCCTTGATCTCGACGAAACCATAGACATCG
AACACTCCGTGCCTCGACCTCACTTAACGCTACGGAACATTTGAATGCTCCTACCTGGCCTGGAC
TGCACAGTTGGGCTGATCGGTTGGACTGCTTGGCTTTGCTACTTG
Right flanking sequence: Indices 168665 -- 169164
GGATGGTGCGCTAATCGACTGTGGCTGCTGCGCTATTCGGCTGGACTAATCGACTGCGCTAATTG
AGCTACCGGGCTGGAGACAGTTAGTGCCTAGAAACTACGGTCAGTGATAGAACTCTTCTCAGTCA
GTGCATGAATGAAGCTCTACTCATCAAAGCTCTACTCATCGAACCTCTACTCAGGTGAGTGCATT
AACCTCTGGTCGATGCATGAAGCTCTGGTCCGTCGGTGCAGAAATGATGCTCCTGTCAGTCAGTT
AAGAATTAAGCTATACTCACTGCCCCTACAACCTCTACTCCGTGCTACCTCTACTCATCAATGCT
CTACTCAGTGAAGCTAGCTAGATAATAGAACTCTGGTCAGTGCATGAATGAAGCTATATACCGTG
CCATTAGTCATCCAGGAGTCGATGTCAGGACTCAATGCTGATACTCAATCAGTCGATGACAGGAT
TCTTTGCCACTAGTCGAGCCAAGAGTTGATGCCAGGTGTAGATCA
Found at i:168826 original size:15 final size:15
Alignment explanation
Indices: 168806--168847 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
168796 TGCATGAATG
168806 AAGCTCTACTCATCA
1 AAGCTCTACTCATCA
*
168821 AAGCTCTACTCATCG
1 AAGCTCTACTCATCA
*
168836 AACCTCTACTCA
1 AAGCTCTACTCA
168848 GGTGAGTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.31, C:0.36, G:0.07, T:0.26
Consensus pattern (15 bp):
AAGCTCTACTCATCA
Left flanking sequence: Indices 168306 -- 168805
TATTGGGGGCCCCTTCGAGATGGGTGGTGCAAAGGACTAGGGTTTCAAGCCGGAGTGGGATAACG
GGCGGATGAATGAGGAGGCCTAGCCGCGAGGACTAGATAATCGTTCCCGGGAGGTCCTTGCCTAG
AGCAGCAGGCATACAATGAACTCTACCTCGACCTCGACGGAACCACAGCCCTCGACCCTTGATCT
CGACGAAACCATAGACATCGAACACTCCGTGCCTCGACCTCACTTAACGCTACGGAACATTTGAA
TGCTCCTACCTGGCCTGGACTGCACAGTTGGGCTGATCGGTTGGACTGCTTGGCTTTGCTACTTG
GCTTGGCATACTAAACTGCTTGGCTACTCAACTGGGATGGTGCGCTAATCGACTGTGGCTGCTGC
GCTATTCGGCTGGACTAATCGACTGCGCTAATTGAGCTACCGGGCTGGAGACAGTTAGTGCCTAG
AAACTACGGTCAGTGATAGAACTCTTCTCAGTCAGTGCATGAATG
Right flanking sequence: Indices 168848 -- 169347
GGTGAGTGCATTAACCTCTGGTCGATGCATGAAGCTCTGGTCCGTCGGTGCAGAAATGATGCTCC
TGTCAGTCAGTTAAGAATTAAGCTATACTCACTGCCCCTACAACCTCTACTCCGTGCTACCTCTA
CTCATCAATGCTCTACTCAGTGAAGCTAGCTAGATAATAGAACTCTGGTCAGTGCATGAATGAAG
CTATATACCGTGCCATTAGTCATCCAGGAGTCGATGTCAGGACTCAATGCTGATACTCAATCAGT
CGATGACAGGATTCTTTGCCACTAGTCGAGCCAAGAGTTGATGCCAGGTGTAGATCAATTGATGA
CAGGTTGTGATTCACTGGATGCCGAGAGGAAAGCCCCTGGAAGGAGGTCCCAATTCACGATTGCT
TATGATACCCGGGAGCACATACCCACCGGAAGATGCATGCAGGCCAATAATCGTTCAATTGAGCA
GCGGCACAGAGAAGAGGTGATCCCAGGATGTTACTCGATGAGGGT
Found at i:171527 original size:45 final size:45
Alignment explanation
Indices: 171458--171550 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
171448 TTAGATACAT
*
171458 ACTCAGAAATATGCTCTATTGGGGATTGCATACACTTTGACTTTG
1 ACTCAGAAATATGCTCTATCGGGGATTGCATACACTTTGACTTTG
171503 ACTCAGAAATATGCTCTATCGGGGATTGCATACACTTTGACTTTG
1 ACTCAGAAATATGCTCTATCGGGGATTGCATACACTTTGACTTTG
171548 ACT
1 ACT
171551 TAGACAAAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (45 bp):
ACTCAGAAATATGCTCTATCGGGGATTGCATACACTTTGACTTTG
Left flanking sequence: Indices 170958 -- 171457
TCTGAGGGCAGGTTACAGTTTTCGTAGTACTACTAAGAGCCATAGGATCCAGAGTCGAAGGAAAG
GACAAGGCACGATGAACCAGATGATAAGAATAAGGGCAGAGATGGCCCATCCTAACAAGTCTTCT
TCTGGAAGGACCTAGTCGAACAAGCGAGCGGTAGTGATAACTTAAAGTAAGCAGTCTCACCAGCA
CCAAAGCAAGCCTTCCTTTCAAATGTAAGGGGTCTGTAATTCCTAAGTTCTGATGATGCAACTAC
AGGTGGTTCCTTTCCTGTGCCACCTTCCTTCCCACCATATTAATAAAGCAGGACTCAAACGCTGC
TGGCTGGATGTATATCCCATCCCCCGGCCACTCCTTCTTGCCAGCCAGGTCTCTGTCCGTGTCCC
AACTTGATATCCCTCACTCACTTGGTTGGCATCCGTCCTTCCAATCTATTCCAAACCATATAATC
AGCCTGAAACTCAGGCATTTTTAGGCCTATCGGAGTTAGATACAT
Right flanking sequence: Indices 171551 -- 172050
TAGACAAAAGGCCTAGTGGAAGTTAGTCAAGGCAGGCATTTATGAGTCTTGCGCTATTGATTAGG
TTGGGCCCTGAACCCGAACTAAATGAGGATAAGACCTTCCGTACCTATCTAATAATAGTTCGTAT
AAGCACAGGATAATAGCTCAGACCCATCTGTATGAGATTTTCCGAGAGCAGCTACCCCCCACCCC
CAAATAGTAAAAACTAAAATACTCAGTTTTTCCGAGCTTCAACCCAGTCCCAGCTTCAAGGGTCA
GTTCCTTGTCAAGGTGGTAAATTCAGGAAGAAAAGGTGGCATTGCATTGCGTTGCCCATCCAACC
ATACCAGCGAGCAGCCCAACCGGTACAATTTAGTGAGGCAGCAGTTCAAGGTAAATAGAAAGGCA
GGCACTGACATGAAAAGCAAGTCGGGATCTTCCTTCTTTCCTAGTAATGTAGTGGGTTCTCTAAT
TAATTGTATCCTGCTCGGCGGTAATAGTCTGGATGGCACCCATCC
Found at i:172697 original size:16 final size:18
Alignment explanation
Indices: 172668--172700 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
172658 CTTCTCTATG
172668 GATAGAGGGTCTTCCTCT
1 GATAGAGGGTCTTCCTCT
172686 GATAG-GGG-CTTCCTC
1 GATAGAGGGTCTTCCTC
172701 CCTTAGGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.30
Consensus pattern (18 bp):
GATAGAGGGTCTTCCTCT
Left flanking sequence: Indices 172168 -- 172667
CAGTCAACAATGGCTATATGCGCATGGGAACATGGGTGGCTATGTTAGGCAATACCTTAGAGCCA
AGATAGATTTACAAAGCCCACACATCTTAGCGGGGTGGTCCGGAGGACAACTGCCGTCTACAAAC
CCTTATACTGTTAAATCCATATTGTACTTATATAAGGAAGCAAAAAAAAACGCTAGATTCCCCAC
CCGGGCAAGCTACCCACCCAACCCCCCGCCCACCAGTTAGGGTCGAACACCTATGGCCAAGCCAC
TATCCTATCTCTAAAAGCCTTAGCCGGATAATAATACAGGAACTCTTTGGAATCTCAACAAACAG
AATCCAACTTCACATCTATCAAGCTCGATTTGCCGGTTCCGCAGGCAAAGCCCACGTAGGCTTGG
TACACTTCATTTCTAGTTTTTGGGCCTTAGAGGTATTATACCTGCTCTTAGAGGAGCCTCCTCCC
TATAGATAGAGGTAATTGTAACGAGGGCCTTATATCTTCTCTATG
Right flanking sequence: Indices 172701 -- 173200
CCTTAGGTTCTGGGCCATCTGTAAGGGAGCTATAGGTTATACCCCTAAATGCCGATATATACATA
TATAAAGGAATATCTGCTTCATCGATCTATATCGCCAACCAATCCTCTCGTTCCCACTCTTTCCC
ACTCTCGTTCCACCAGAGAAGATAAGGTCTGTTGGTGGGGAAAGCGGTGGGGAAAGCTTGTCTCA
ATCTGGGTTGGGTGCTACCTTCTGGGTTGGGTCATGTTCGACTTCCTTAGATAGAGGTAATTGTA
ACGTGAGCCTCGGTAATGCGATCGAAGGGAGCTGTCAATAACGGGTAAAGGTATGACCGAGCGAC
TTTCACTGTCCTCACTTTCCTGAAAGGCCATATGAGCTATACTCTTATCTTATCTTATTCCTAGT
TCTTGCCGGTTTGAGTGCTTGCCGGAAAGTATTTATCCCTCTCTGTAATGGGTGAGAAGTGGATG
AGTTAATATTACTTGCCTTATTATCTGTCTCCTTCCCTTAATATG
Found at i:172841 original size:12 final size:12
Alignment explanation
Indices: 172810--172841 Score: 50
Period size: 10 Copynumber: 2.8 Consensus size: 12
172800 CCAACCAATC
172810 CTCTCGTTCCCA
1 CTCTCGTTCCCA
172822 CTCT--TTCCCA
1 CTCTCGTTCCCA
172832 CTCTCGTTCC
1 CTCTCGTTCC
172842 ACCAGAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.56
12 8 0.44
ACGTcount: A:0.06, C:0.50, G:0.06, T:0.38
Consensus pattern (12 bp):
CTCTCGTTCCCA
Left flanking sequence: Indices 172310 -- 172809
AAATCCATATTGTACTTATATAAGGAAGCAAAAAAAAACGCTAGATTCCCCACCCGGGCAAGCTA
CCCACCCAACCCCCCGCCCACCAGTTAGGGTCGAACACCTATGGCCAAGCCACTATCCTATCTCT
AAAAGCCTTAGCCGGATAATAATACAGGAACTCTTTGGAATCTCAACAAACAGAATCCAACTTCA
CATCTATCAAGCTCGATTTGCCGGTTCCGCAGGCAAAGCCCACGTAGGCTTGGTACACTTCATTT
CTAGTTTTTGGGCCTTAGAGGTATTATACCTGCTCTTAGAGGAGCCTCCTCCCTATAGATAGAGG
TAATTGTAACGAGGGCCTTATATCTTCTCTATGGATAGAGGGTCTTCCTCTGATAGGGGCTTCCT
CCCTTAGGTTCTGGGCCATCTGTAAGGGAGCTATAGGTTATACCCCTAAATGCCGATATATACAT
ATATAAAGGAATATCTGCTTCATCGATCTATATCGCCAACCAATC
Right flanking sequence: Indices 172842 -- 173341
ACCAGAGAAGATAAGGTCTGTTGGTGGGGAAAGCGGTGGGGAAAGCTTGTCTCAATCTGGGTTGG
GTGCTACCTTCTGGGTTGGGTCATGTTCGACTTCCTTAGATAGAGGTAATTGTAACGTGAGCCTC
GGTAATGCGATCGAAGGGAGCTGTCAATAACGGGTAAAGGTATGACCGAGCGACTTTCACTGTCC
TCACTTTCCTGAAAGGCCATATGAGCTATACTCTTATCTTATCTTATTCCTAGTTCTTGCCGGTT
TGAGTGCTTGCCGGAAAGTATTTATCCCTCTCTGTAATGGGTGAGAAGTGGATGAGTTAATATTA
CTTGCCTTATTATCTGTCTCCTTCCCTTAATATGCGACCTTAACCATGAATCTTGGGGGAGATCC
CCCAACCCCCCACTAGCAGGAAGGATTTTTTCTATTGATTATTGAGAAGTAACCTTCCAGATGAC
TAGCAGGAAGGATATTTATTATTTACAGAAGCGGTGGGAACAGGG
Found at i:180226 original size:15 final size:16
Alignment explanation
Indices: 180196--180244 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 16
180186 TAGCTTTCGA
180196 TTCTCACCAGGGCTCT
1 TTCTCACCAGGGCTCT
180212 TTCTCACCA-GGCTCT
1 TTCTCACCAGGGCTCT
180227 TTCTTTCAACCAGGGCTC
1 TTC--TC-ACCAGGGCTC
180245 ATCTTTAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.31
16 9 0.31
17 2 0.07
18 4 0.14
19 5 0.17
ACGTcount: A:0.14, C:0.37, G:0.16, T:0.33
Consensus pattern (16 bp):
TTCTCACCAGGGCTCT
Left flanking sequence: Indices 179696 -- 180195
GAGGAAGTAAGGAACGAAGTGAAATACATGAATGAATCAAATTGCCTACTGAAAAATTGAGTTAT
TGACGCGCAAGCAGGCAAGCAAAGGCTATGCAGATTGAAAGAAGCCGATGCCAGGGAAATGGGGG
AAGGGGTGGAGAAAGAGCTGAAGCCGAGGCAGCAGCCACCCCCGAGGGAAAGAGAGAGATGGCCG
AGGTGACCAAGATACACCCCAATACGAACGATGATCGAAGCTACGCCAAACATTTCATTCCGCGC
AAACAAGCAAGAGAAGAATAGCTGGAATTCCCCACTCAAGCACAGGCAAGAGCCGGAGCAGCTTT
CTCAGTTCAGTTGAAAGTATCATAAAAGGTTTCAAAATATTGTTTCCAGAGCACTAAAGTGTGCA
TAGAATATATTTCTTCCGGTATCCACCTCAACTTCTAACTGCTCTGCCTTCAACTTATGAAAAAA
ACTCCCTCTGAATAGCTCACCGACAGCTAACAAGCTAGCTTTCGA
Right flanking sequence: Indices 180245 -- 180744
ATCTTTAACCGGGGCTCATTCACCAGGGCTATTTCAACAGCTGCTGTTCTACTAAGCAAAGGTTT
TAAATGCTTATATCTTGTTTTGCCTCCTGATACTTCTTTTAAATGCGGGAGAATGGGTTTAATTG
GGAGAATGCATTAATGCGGGCGAATAGGGACTAATATAATCAATCAATCGAATAACTCGATCACC
GGGCCCACCCCAACCAGCTACTATCTTCTATGCCATGAATCAAATCAATTACTACTGATCATCGG
TGACCACGCACCTCACAAACATTCTCGGTTTTCAGTAAGGATCCGTTCGTAGGCCCGCTCATTTG
GAAGACCTTTATACCTCGGCATCCCTAGTCCCGCCGGTATCAAATTCAATCCACTTACTGTTCCT
TCCTTTTTCGCCAATATGTGTCCTGGGCGTTATCATCCTCCTTCCTTACGCGTACTGGGCGATCC
TGGGTGACGAGGATTGGGCAGGCGTACTGAATGCGTTAATGGGAA
Found at i:180259 original size:17 final size:18
Alignment explanation
Indices: 180228--180263 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
180218 CCAGGCTCTT
180228 TCTTTCAACCAGGGCTCA
1 TCTTTCAACCAGGGCTCA
*
180246 TCTTT-AACCGGGGCTCA
1 TCTTTCAACCAGGGCTCA
180263 T
1 T
180264 TCACCAGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31
Consensus pattern (18 bp):
TCTTTCAACCAGGGCTCA
Left flanking sequence: Indices 179728 -- 180227
TGAATCAAATTGCCTACTGAAAAATTGAGTTATTGACGCGCAAGCAGGCAAGCAAAGGCTATGCA
GATTGAAAGAAGCCGATGCCAGGGAAATGGGGGAAGGGGTGGAGAAAGAGCTGAAGCCGAGGCAG
CAGCCACCCCCGAGGGAAAGAGAGAGATGGCCGAGGTGACCAAGATACACCCCAATACGAACGAT
GATCGAAGCTACGCCAAACATTTCATTCCGCGCAAACAAGCAAGAGAAGAATAGCTGGAATTCCC
CACTCAAGCACAGGCAAGAGCCGGAGCAGCTTTCTCAGTTCAGTTGAAAGTATCATAAAAGGTTT
CAAAATATTGTTTCCAGAGCACTAAAGTGTGCATAGAATATATTTCTTCCGGTATCCACCTCAAC
TTCTAACTGCTCTGCCTTCAACTTATGAAAAAAACTCCCTCTGAATAGCTCACCGACAGCTAACA
AGCTAGCTTTCGATTCTCACCAGGGCTCTTTCTCACCAGGCTCTT
Right flanking sequence: Indices 180264 -- 180763
TCACCAGGGCTATTTCAACAGCTGCTGTTCTACTAAGCAAAGGTTTTAAATGCTTATATCTTGTT
TTGCCTCCTGATACTTCTTTTAAATGCGGGAGAATGGGTTTAATTGGGAGAATGCATTAATGCGG
GCGAATAGGGACTAATATAATCAATCAATCGAATAACTCGATCACCGGGCCCACCCCAACCAGCT
ACTATCTTCTATGCCATGAATCAAATCAATTACTACTGATCATCGGTGACCACGCACCTCACAAA
CATTCTCGGTTTTCAGTAAGGATCCGTTCGTAGGCCCGCTCATTTGGAAGACCTTTATACCTCGG
CATCCCTAGTCCCGCCGGTATCAAATTCAATCCACTTACTGTTCCTTCCTTTTTCGCCAATATGT
GTCCTGGGCGTTATCATCCTCCTTCCTTACGCGTACTGGGCGATCCTGGGTGACGAGGATTGGGC
AGGCGTACTGAATGCGTTAATGGGAATGGGGGAGCGCGGTAATGC
Found at i:182991 original size:13 final size:13
Alignment explanation
Indices: 182973--182997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
182963 GCCAAGCCAA
182973 GTATCCCATCCCG
1 GTATCCCATCCCG
182986 GTATCCCATCCC
1 GTATCCCATCCC
182998 AGGAGCCCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.12, T:0.24
Consensus pattern (13 bp):
GTATCCCATCCCG
Left flanking sequence: Indices 182473 -- 182972
GTATTCTGTTGGCCCCCATCCTTTTGTGCGCTCCTCTCCCTAATGGTCGAGCGGATAAATCTCTC
AGAAGACATTCAGTATCGATCACTCAATAACTATCAAGCATTATCTACCTCCCTTCCAATACTGG
CACTACCGGTGGAGACTATCACTTGTCTGTTGCATGACTCGACGGGTGATCGTAAGTAACGCATA
TCGCGTTGTTCCGAACCGTACAGCCCCCCATCCATATATGAATGGCATTGCCTCTTGGGATCGCC
ACCTGGAAATCGGGTATGCTCGGCTATACTAGGTAAACTATCTTAAAAGGCAATGTGCAGTAAGA
ATCAAATGCAATTTGGAGCCCAAAGTCCCTACTCTGACCCGCTAAAAAGGCGAAAGTATTAAACA
AGAATGGCGACTGTGGTGATTCTCTATAAAAGGTATCCAATCCGAGTATTCAAGCCAATCCAATT
AACCAAGTAGAGTATCCGGGGAGCCAAGCTCAGGAGCCAAGCCAA
Right flanking sequence: Indices 182998 -- 183497
AGGAGCCCAGTCGAGTAGCCCGGCCGAGTAGCTGATTCAATCAGTCGAGTAGCCAAGCCAATAAG
TTAAACTGATCAGCCCAACCGTGCATTCCAGCCCAGTGTAGGATATTATTTGTTCGCGTACCGTG
TGCCATACCGTACCGTGCATGTCTATAGCTATGTGGGGTGCCTTATGTGACTGCCTCCTGTAAAA
GAGTGTATTCAATATTGGAAAGGGAGGGCTTGGGCTGGCACTTAGACCTTTGCTATTGACCTTTT
TAAGCTAGAAGGATGGATTGCATGGCACGACACGGATTCTCATTCACCCATCCTTGGCCCAGTTG
GACAGCTTAGTTGTTGTTGTGGTGGTGTGGGAGGAACTCCCTATTTCTTATAGACAGTCAGAACT
TAAGAAACATTGATGGATGATGGTCAATTAGAGAGAGAGCCTTGTTGGATGGGCGTTCCATAACA
ATTGATGACATATTTGGGTACTACTAGTGCTATTTATACTTACTC
Found at i:185064 original size:13 final size:13
Alignment explanation
Indices: 185046--185070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
185036 CGATCTCGAC
185046 CTATTCCTCGAAA
1 CTATTCCTCGAAA
185059 CTATTCCTCGAA
1 CTATTCCTCGAA
185071 CTCTACCCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (13 bp):
CTATTCCTCGAAA
Left flanking sequence: Indices 184546 -- 185045
CCAGAAAGATGGTATAGAGAGAACAAGTATAGGTAGAATAGGTCTAAGTTCTTCAGGTGGGTAGG
TCTATTCCTTGCAGTGGGTTCAAATTCCTGAATCGTATTGGCTCCTCGGCGGGATAGGTAATAGT
GATACCCAGAAGTTCCTAGTAGTACCGAGAAGAATTCATAAGGTTCGGTATTAGGGATTTATCTT
ATATGTTCCAATTAAACCTCTTACCTGGTGGGATTCGATCTCAAATGTGTAAACCACTGGGGAAT
TACTACCTTCTGTGCTCGGCTCGGAGCTGGAGTCATAGCGATGTCACACCAATAGCGATTTCATA
CAGCTCGTTATATACAATGCACCTAGTTAGGTTCATACCGTAGCAGTCATACCCGATTGCCAATC
ATTGTCGGCCGATCATTGCTGGGCTGGGCTCATGGGCTCCTGGGCAGGGCTGCTCGGTTGAGGAC
AGTCATACAGAGACCTCGACCCTAGAACTCTACCTCGATCTCGAC
Right flanking sequence: Indices 185071 -- 185570
CTCTACCCGCTACCACAAACACACGGTATCACTTGCGTATACGCAACATTAGATTATACAGCCCG
CATAGAGCTAACTAAGCCTGCCAGACATAGCATAAGCACCAGAGTCATTGCCGATAGCCGATAGC
AAGTTCTCTTTGCCGAGAGCCAGTCGCCAGGAAGGAGGTACTTGTCACAAAGGCTGGCTGTCGAT
GGCCGATCATAGCCGATAGCCCATCATTACCAAATGGTCATAGCCACTCAGCCTATAGTCAATCA
TTCCCAGTAAGCCAATACCCGGTAGCAGATAGATAGTAGACAATACCCGGGAGACCATCAGTGCC
AATCATTCCCAACCGGTCATAACCAGGAGGTCTCGCCTAAAGCAGCCATATCCTTAGAACTCGAA
ATAGACCCTCGATCTCTACCTATAACGCTACGGAATCATGGAAGGAAGGAAATGTTCCTACCTCA
ATTAGATGACATGACGGTGCATTACTTACAATGCACCGGTTGAGG
Found at i:186599 original size:25 final size:25
Alignment explanation
Indices: 186566--186614 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
186556 GGGTAAGGCT
186566 TATTGATTGAATGAGACTGAAAGGA
1 TATTGATTGAATGAGACTGAAAGGA
*
186591 TATTTATTGAATGAGACTGAAAGG
1 TATTGATTGAATGAGACTGAAAGG
186615 CTTATAGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.27, T:0.31
Consensus pattern (25 bp):
TATTGATTGAATGAGACTGAAAGGA
Left flanking sequence: Indices 186066 -- 186565
CATTAAACTCTACTCAGGAAGCTCTAATCATAAAAATATACTCAGTTAGTGCATAAACCTATGGC
CCGTGCATTAATGAAGCTCTTGTCAGTCCTGCCTATTTACTCTATCTTTTGCATATTTATTCTAA
AAGTTTGGGGACTGACTGCTTCTTTCTCTAGACCTTGCCGACTTATCGCTTCTTGGTACCGCGAG
GGCCGGACCCCTGAAGGAAGCCCTTACCTTAATTGTTGAGGAGGTGGTCAATAGATCTAGAGCGC
CTGTAGGTCAGGGCTTCTCAGAAAAGCTTGAAAGCCTTATTTGTTAAACAAATCCTTCGTATATC
GCTCGTTTATAATCCCATAAAGGAATATGCCTTAAGAAGCCCTAGAGCGCGTTTTTGATGAGCTA
AACGCTAAGGGAGGTGATTGATTGACTGAAAGGTAGCTCCCTCCGCTCCCTCAAGAAATCGGTCG
CATCTTGCGAAGGAAGGGCTCCCTATCCCCTTTCAGGGTAAGGCT
Right flanking sequence: Indices 186615 -- 187114
CTTATAGACTCCTATAAGGCTTCTAGTTCCTTAATTGATTGATTGACTGAAAGCGTTAGCGTCCC
TGGAATGTCATACATCACTAACTCTATTCACTCACTCTATTCATTCACTAGCGTGGGGGCTTGTC
TCCCTATAGCTTCTTCGCTGGAGCTCTATGATGGATGCTACCTACAACCTCACTTATAGCAGCTG
TAGTTCAACTCCACAGGTATACCTATTTGAAGGTGAAGGTTTTAATAGTTTCATAGATAGAGAAG
AGTGTAAGCTTTAGCCTTAATTATACCCATCATAGAGACTTCCGTATGCTGCTATGACTAGGTCT
CCAGGTTAGGTATCCCGGCTAGTCCTCAATTGAGTGTGAAAACCTATAATGAAATGGAAAAGTTT
AACGTAGAGATGCAATATCGTTATATTAATGTGGATATATTAATGTGGATGAGGTACACCGGTAC
TATTAGCTGACCGGCTAGCAAAGAAAGAAGACCTTGTTTCACTAG
Found at i:186716 original size:13 final size:13
Alignment explanation
Indices: 186694--186728 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
186684 ATGTCATACA
*
186694 TCACTAACTCTAT
1 TCACTCACTCTAT
186707 TCACTCACTCTAT
1 TCACTCACTCTAT
*
186720 TCATTCACT
1 TCACTCACT
186729 AGCGTGGGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (13 bp):
TCACTCACTCTAT
Left flanking sequence: Indices 186194 -- 186693
AAAAGTTTGGGGACTGACTGCTTCTTTCTCTAGACCTTGCCGACTTATCGCTTCTTGGTACCGCG
AGGGCCGGACCCCTGAAGGAAGCCCTTACCTTAATTGTTGAGGAGGTGGTCAATAGATCTAGAGC
GCCTGTAGGTCAGGGCTTCTCAGAAAAGCTTGAAAGCCTTATTTGTTAAACAAATCCTTCGTATA
TCGCTCGTTTATAATCCCATAAAGGAATATGCCTTAAGAAGCCCTAGAGCGCGTTTTTGATGAGC
TAAACGCTAAGGGAGGTGATTGATTGACTGAAAGGTAGCTCCCTCCGCTCCCTCAAGAAATCGGT
CGCATCTTGCGAAGGAAGGGCTCCCTATCCCCTTTCAGGGTAAGGCTTATTGATTGAATGAGACT
GAAAGGATATTTATTGAATGAGACTGAAAGGCTTATAGACTCCTATAAGGCTTCTAGTTCCTTAA
TTGATTGATTGACTGAAAGCGTTAGCGTCCCTGGAATGTCATACA
Right flanking sequence: Indices 186729 -- 187228
AGCGTGGGGGCTTGTCTCCCTATAGCTTCTTCGCTGGAGCTCTATGATGGATGCTACCTACAACC
TCACTTATAGCAGCTGTAGTTCAACTCCACAGGTATACCTATTTGAAGGTGAAGGTTTTAATAGT
TTCATAGATAGAGAAGAGTGTAAGCTTTAGCCTTAATTATACCCATCATAGAGACTTCCGTATGC
TGCTATGACTAGGTCTCCAGGTTAGGTATCCCGGCTAGTCCTCAATTGAGTGTGAAAACCTATAA
TGAAATGGAAAAGTTTAACGTAGAGATGCAATATCGTTATATTAATGTGGATATATTAATGTGGA
TGAGGTACACCGGTACTATTAGCTGACCGGCTAGCAAAGAAAGAAGACCTTGTTTCACTAGAGTG
AGAGTTCTATGGAGTAAGGTCTTAGAGAAGAGAGGACTGCCTAAATGAAGTTCATAATGGAAACT
GGTAAGGGCAAGGAGAGTATTATAGTGTATACATGAACTTCATGT
Found at i:187045 original size:14 final size:14
Alignment explanation
Indices: 187026--187054 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
187016 GCAATATCGT
187026 TATATTAATGTGGA
1 TATATTAATGTGGA
187040 TATATTAATGTGGA
1 TATATTAATGTGGA
187054 T
1 T
187055 GAGGTACACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (14 bp):
TATATTAATGTGGA
Left flanking sequence: Indices 186526 -- 187025
TGCGAAGGAAGGGCTCCCTATCCCCTTTCAGGGTAAGGCTTATTGATTGAATGAGACTGAAAGGA
TATTTATTGAATGAGACTGAAAGGCTTATAGACTCCTATAAGGCTTCTAGTTCCTTAATTGATTG
ATTGACTGAAAGCGTTAGCGTCCCTGGAATGTCATACATCACTAACTCTATTCACTCACTCTATT
CATTCACTAGCGTGGGGGCTTGTCTCCCTATAGCTTCTTCGCTGGAGCTCTATGATGGATGCTAC
CTACAACCTCACTTATAGCAGCTGTAGTTCAACTCCACAGGTATACCTATTTGAAGGTGAAGGTT
TTAATAGTTTCATAGATAGAGAAGAGTGTAAGCTTTAGCCTTAATTATACCCATCATAGAGACTT
CCGTATGCTGCTATGACTAGGTCTCCAGGTTAGGTATCCCGGCTAGTCCTCAATTGAGTGTGAAA
ACCTATAATGAAATGGAAAAGTTTAACGTAGAGATGCAATATCGT
Right flanking sequence: Indices 187055 -- 187554
GAGGTACACCGGTACTATTAGCTGACCGGCTAGCAAAGAAAGAAGACCTTGTTTCACTAGAGTGA
GAGTTCTATGGAGTAAGGTCTTAGAGAAGAGAGGACTGCCTAAATGAAGTTCATAATGGAAACTG
GTAAGGGCAAGGAGAGTATTATAGTGTATACATGAACTTCATGTATGGACTAAGATAATAGGAGG
GTCCTAGGCTGCCACTTACTCCAAGGGTAGTTGGATTATAAAGGCAACAAGTAGATATAGCTTAT
GGGAAACACCTAGTAGTTCTTACACTACAAAGGGAATCAATACTATTTATTTCTATTGTGGAAAT
ATGGAGGAGAATAATTACATATATAATATAACTTTTATAATACACCCTCTTGCTCTTCCCATTGT
TGATCTAGTGGAAAGAACCTCTCTCATCGGCTATGGGAGTGGGCCTGGATGCAAGGGCGTACCCA
GAGAGAAACTTTCCAGAAATGGCCATTTTTAGGAATAATCAAATC
Found at i:192864 original size:20 final size:20
Alignment explanation
Indices: 192828--192866 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
192818 TGAGTTCTTT
*
192828 AGTAATTCTGTACTAACTAG
1 AGTAATTCTGTAATAACTAG
192848 AGTAATTCCT-TAATAACTA
1 AGTAATT-CTGTAATAACTA
192867 AGCTAGCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.36
Consensus pattern (20 bp):
AGTAATTCTGTAATAACTAG
Left flanking sequence: Indices 192328 -- 192827
ATAATCGCTGCTTAATAATAGTAGGCCCGCCTCTTCTCTTTACTGCGTCGAACCCGCATATAGAT
TCTTTACCGAAAGGCATGCATTGAAGTAGGGCAATTAGGAATAGTAGGGCCTTTATTAATAGTAG
GGGGTTTGTGCTAATGAGATCGAGATCGGGACATGGCTGATCGAATCGGTCAATGGACGGATTGG
GTAATGGGCATATCGAGATCATAGCATTTGTGTTCCGGGGTTTTCGTACTCGCAGTAGGTGAAGC
GAGTGGATCGGCTATCGCTATGGCTATTCCAGTATCTTGATATCGGGGTATGGGTGTTTCCGGTC
TCCGCATGTGATTCGTGAGATGCACGACCCAACGTGGTCTTATCCCCGATGATAAGAAGAGCCTA
GATCTTTCAATCTAGATATTTCCCTGCCAGATATTTCATACCCTTCGGTTGACTCACTAGATATT
TCATAACCTGGTAAATCTTCTGATCTGATAATACATGAGTTCTTT
Right flanking sequence: Indices 192867 -- 193366
AGCTAGCAGCATAAAAGCCTATAGTGGATCCAACAACAACATCCCTTATAGTCCGAGAACCAGAG
CCCGCTGCATACCTTGGCTAGGTAGGTTCCATAACCCATAGTATCCCTTCCTGATCGAGTGACAG
TTCCACGTACAGATGATCGAGGTCCTCTGTGTTTCGAGAGCGAGAAGAAAGAGCTGATGTTCGTG
ATAGAGATCCAGCCCTAGGTCCCACCACTCCCGTGCCAGTCCCAGATCCTCTAGCTTCAATAGCA
GATCTATATGAAGATAAAGATCCATACCCATATTATCCAAATTGCTAAGCCATTACCTCGTCCAG
TTCCATATCCATAAGCAGCAGATCTCGTTCCGAAGCCATCTGTCCCAGTTCCTTCTGATGATCTA
CAGCGTGATTCAGCAGTTTCTTACCTTCGTGATCCATACCTTCGTAAGCGAGCTGAAGATTCTGA
TGTTCGTTAGCGAGATCCTGATGCTCGTTCCCGTTATCCAGATGA
Found at i:196975 original size:17 final size:17
Alignment explanation
Indices: 196955--196989 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
196945 TATGCCTTCC
196955 TTCAATCTATCGCTTGA
1 TTCAATCTATCGCTTGA
196972 TTCAATCTATCGCTTGA
1 TTCAATCTATCGCTTGA
196989 T
1 T
196990 ATGCGAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (17 bp):
TTCAATCTATCGCTTGA
Left flanking sequence: Indices 196455 -- 196954
TGCCCCTAAATGTCATATTGGTTGTAAAGGATGGGGACTAAAGGTCAAGGAACTCCGCCAGAACT
ACTTAAGGCTTTGCCTAGCTTTTTCCCACCCCATATCTCTTTGTCCCTTGTAAAGATCTAAACTA
AGAAGTTCCTTGCCATTGAATTACTCCAAAGCTTAGTAGTAACTATTGCTAAGAGTATTTACAGT
GTACAATAGGCATGCATTCAAATCTCTTACTTGTGATGTTGAACTATCCCTCTTTCTATCCTTTA
ATGAGGCTAGGAGACTAGGAGACTTACTGGTTGTATGCGGTGCCAAGCCAGGAACCCCAGACTGT
TAATGAGCCTTCCTTATTGCCAGACTGTGAATGAGGCCTTTACGGTGGAGTGTAATTATTTATCA
CCGCAAGAGAGGTAAAAGGAAGGGTGAGATGTATGGGATGGCAAAACCGAACCGCCTATTCAGTT
CCTAACCAGGCAATATATATAAATGTATGTAGGGCTATGCCTTCC
Right flanking sequence: Indices 196990 -- 197489
ATGCGAGTAATATAAATGGATATTTCCTTTCCTCTCGTGGAGGCTTTCTTTATATCTGGTCTGGG
TTGCCTCAAATCTCAGGGTGGAAAAAGAGGAAGAATAAGGGATTATATGAACAAAAGTAATATTT
CCATTAAGAGGGGTAGATGTGTGTGGAAGAGATTGCTCCTGAGCTAGTCAATGGAAGAGATTGTT
CCTGAGGAGGTGCTATTTATGTGGATGTCACAGAGCTGTAGCATCTATCTAGGGAATAGTGTTTA
TGTGGTTCATCTATTCCTTTATATCTTAGGGCGGTAAGGGAAGGGGACTGGCTCAATAAAGTATC
TCTGCTTCTTGGGTTTATAAACGATCTATGCTCCTCCAATAAAGGATCTCTGCTCCCGGGGTTTC
CTGTTAATTCTCCTTGGGTAATAAATAGAGTTTAAAGTGAAACCTACCTATCCTTTAGCCCTCAA
TCTCTTGGTCTCTTCCCACTTAGAGATGTATATTTCTAAAGCTGT
Found at i:199638 original size:23 final size:23
Alignment explanation
Indices: 199604--199648 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
199594 GGGTAGACCC
199604 TAGACCCAGAACCATAAGTATAG
1 TAGACCCAGAACCATAAGTATAG
*
199627 TAGACCCGGAACCATAAGTATA
1 TAGACCCAGAACCATAAGTATA
199649 TTAAAACACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (23 bp):
TAGACCCAGAACCATAAGTATAG
Left flanking sequence: Indices 199104 -- 199603
AAAGGTGGGGAAATAAAGGTGGAGGGGGAGCGTCTCTTTCTCTAGCAGCTAGCTATAGAAGTGCT
CGGAATAAAAGTGACAGTTGCTAGCCTTCCCGATCAGTCTCTTTGGCTAGCCTTTCTCTCAAGCA
GCCCTCCCAAGCTCCTACCTCGTGGGTAATAGCTTTAGAGAGACAGATAGTAAGTCTCTTTATCT
AGCCTTCCCAACTCTGCCTACCACCTTATCTAGTCCTTTAGGGAAGGTCTGGGGTCTTCAGTCTC
TTTCTAAGGTGGGGAAAGGCGCACGCACTATTCTCTTTCTCAAGGGTCAAGGTGGAGGGGGAAAG
GAAAATAAATAACTATTCCTAGGAACTTGTTATACAAACAGAGGCAAAGGCGAACCCAACTCTTA
GAGTTTCAACGCCCATTCTTGCCACAAGTAGATTCTTTTGATTGTGCAGTCGCTTCTGACCTTGA
TTAAGTAGTTGATCCAGTCGATGAACCAAGTGACCGGGTAGACCC
Right flanking sequence: Indices 199649 -- 200148
TTAAAACACCATAAGCAGGTGCAGATCCTATAAGGGCAGGTGCAGTTGATCCTGGAGCAGAGGCA
AGGGTAGCATTATCAAAGAGAAGAGTAGGGCTAGCCCCAGCAGCAAAGCTAGCAGCAGAGCAAGC
AGGAGGATAAGCAACAACAGTAAAAACAGGAGTAGGAGCATACATAAGTTCTATCAGAAGAGCAG
ATAAAGATCCAGAGTTAGTTGACCGAGCTTATCCACCAACACCACCTATAGCAGAGGCAGTTGAA
GCGGCACCAATAACAGAGTCCCCAGTCCCATATACTGTTGTTTCAGTAGAGCCTTTAGTAGATCC
AGCAGTAGTAGGAGATCCAGCAGCATTCGATTAAGCTGTCGGTGACCCATAAGTAGATTACGCGG
TTGGTTCAGCGATAGATTCCGTAGTTGAACCAGCTTATACACCACTTCGTCTAGCACTCCTTCCC
GTTAGAGAACCACTTCCCGTTAGAGAACCAATAGTATCCCTTCCA
Found at i:200121 original size:18 final size:18
Alignment explanation
Indices: 200098--200133 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
200088 TCTAGCACTC
200098 CTTCCCGTTAGAGAACCA
1 CTTCCCGTTAGAGAACCA
200116 CTTCCCGTTAGAGAACCA
1 CTTCCCGTTAGAGAACCA
200134 ATAGTATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (18 bp):
CTTCCCGTTAGAGAACCA
Left flanking sequence: Indices 199598 -- 200097
AGACCCTAGACCCAGAACCATAAGTATAGTAGACCCGGAACCATAAGTATATTAAAACACCATAA
GCAGGTGCAGATCCTATAAGGGCAGGTGCAGTTGATCCTGGAGCAGAGGCAAGGGTAGCATTATC
AAAGAGAAGAGTAGGGCTAGCCCCAGCAGCAAAGCTAGCAGCAGAGCAAGCAGGAGGATAAGCAA
CAACAGTAAAAACAGGAGTAGGAGCATACATAAGTTCTATCAGAAGAGCAGATAAAGATCCAGAG
TTAGTTGACCGAGCTTATCCACCAACACCACCTATAGCAGAGGCAGTTGAAGCGGCACCAATAAC
AGAGTCCCCAGTCCCATATACTGTTGTTTCAGTAGAGCCTTTAGTAGATCCAGCAGTAGTAGGAG
ATCCAGCAGCATTCGATTAAGCTGTCGGTGACCCATAAGTAGATTACGCGGTTGGTTCAGCGATA
GATTCCGTAGTTGAACCAGCTTATACACCACTTCGTCTAGCACTC
Right flanking sequence: Indices 200134 -- 200633
ATAGTATCCCTTCCAGTCCCAGTTCCAGTTGGAGATCCAATTTAAGCCCCAGATCCATACCCATA
TTTTAGAGAGAAAGATCCAGTTCGTTATTGATATCCAGATTATTACTTTGCTTATGCAGTCCTTT
ATTACGCTGTCGATCCAGCACCAGCATTAGTAGATCCAGTAGCAGAGACAGCAGCAGCTTAAGTC
CCAGCCGTAGAGGGAGCTTAAGTAGCATAGGCAAAGGTAGTAGCAGATCCAGATGTTCCAGATCC
CCCAGGAGCAGACGCAGTTGACCGAGCACAACCACTAGCAAAGGCAGATATATCTACGGTACCTC
AAGCAGCAGGATAAGTAGATCCAGAACCAGCAGCAAAGGCCCAGTTCCATAGGAAATCCATACAA
CCGCTAAGCAAATAGAAAAACAACTAAGTTCTTAAACCTCTAAACCCTCTTACCTTACAAGGGCT
ACTAACTTAACCAATGTAGGGTAGAGCAGGGGAAGATATGACACT
Found at i:214980 original size:43 final size:43
Alignment explanation
Indices: 214928--215022 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 43
214918 GAATGAATCC
* *
214928 ATGAATGAATGGAAGGATGAAA-GGATCCGATGAAAGGAGCCAA
1 ATGAATGAATGGAAGGAT-AAATGAATCCGATGAAAGGAACCAA
* *
214971 ATGAATGAATGGAAGGATAAATGAATCCGATGGAAGGAACCGA
1 ATGAATGAATGGAAGGATAAATGAATCCGATGAAAGGAACCAA
215014 ATGAATGAA
1 ATGAATGAA
215023 CGTCCTAGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
42 3 0.06
43 44 0.94
ACGTcount: A:0.45, C:0.08, G:0.31, T:0.16
Consensus pattern (43 bp):
ATGAATGAATGGAAGGATAAATGAATCCGATGAAAGGAACCAA
Left flanking sequence: Indices 214428 -- 214927
CCGACTTACCTTACTGCCTTCTGTTTCGACTGCTTTCTGCTCCGATTAAACTCTGAAAACTGGAA
AGAAGCTTTTTCACCTTCCCTTGAGGTGTAGGTTGGAGCGCTTACGCCGGTTGAGAGACACCCCG
CAGTCGGATTCTTTTGAATATACCGCATAGACACGAGAGTACATACATTGTGGTGCGAGCGATAG
CCCAGTGGATAGATACAAAATAATATGGTATGGTCTTTTAAGGTCTTATAAGGGCAGGTACCGGT
CATAAGGGCTGGTCTTATCAGGGATTGTATGGTCTTATCCAGTGAGGTCAGGTCAGGTAAGTGAG
GCCGAGAGCGAGTGAGATATTCCGGGAGTCGAAAGGGCGATGATGGCTTTCTTTTTCACCTTCCC
ATGATCCCCTCCGGGGGCCGAACACACAGTGAAAGAAAGATTCGTACCAGTTTAGTGATAACCTC
ATGGTTGATGGATGGAAGGATAGATGGATGGACCCGAATGAATCC
Right flanking sequence: Indices 215023 -- 215522
CGTCCTAGTTGGGAAATCAGAAGAGCATAGCCAATAAACACGCGATGATGAGTTGTGTTATACAC
GTGGATATACTTACACGCATTATTATTATCGCTATTACTTTACACACGCGGGCGCCTAGCGCGTT
GAGGTTGGTTGAATGGAGGGATACTACCCCCATGAGGCTGGGTTGAAGGATCGCCACAGCTTGCT
TTATTGTTACCCGCTACATACTATTTTTTCCCTTGCGTTTAACCCGCCGCTTAATCAGGACAGAA
GCTTCGAACCTTGAGGTTGCTTGGATAGATGATCAACACTTGCCCATGATCGCTATCGCTTGCCG
GAATAGTCACCAGTTAATCGAGATAACGCTCATGCTCGAAGGAAAGATCACTAACGCTTGACCAC
TTGTCGAAGGATTGACACAGCTTGATGAGGAGGTTGGAAGGATTGCTACAACTGCTTGCTTGCTT
TGTTACCGCTAAGAAATCGTTCCCCCGGAAATTTCCACGAAAAAA
Found at i:215005 original size:21 final size:21
Alignment explanation
Indices: 214936--215008 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
214926 CCATGAATGA
*
214936 ATGGAAGGATGAAA-GGATCCG
1 ATGGAAGGAT-AAATGAATCCG
* *
214957 ATGAAAGGAGCCAAATGAAT--G
1 ATGGAAGGA--TAAATGAATCCG
214978 AATGGAAGGATAAATGAATCCG
1 -ATGGAAGGATAAATGAATCCG
215000 ATGGAAGGA
1 ATGGAAGGA
215009 ACCGAATGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
20 8 0.20
21 18 0.44
22 12 0.29
23 3 0.07
ACGTcount: A:0.44, C:0.08, G:0.33, T:0.15
Consensus pattern (21 bp):
ATGGAAGGATAAATGAATCCG
Left flanking sequence: Indices 214436 -- 214935
CCTTACTGCCTTCTGTTTCGACTGCTTTCTGCTCCGATTAAACTCTGAAAACTGGAAAGAAGCTT
TTTCACCTTCCCTTGAGGTGTAGGTTGGAGCGCTTACGCCGGTTGAGAGACACCCCGCAGTCGGA
TTCTTTTGAATATACCGCATAGACACGAGAGTACATACATTGTGGTGCGAGCGATAGCCCAGTGG
ATAGATACAAAATAATATGGTATGGTCTTTTAAGGTCTTATAAGGGCAGGTACCGGTCATAAGGG
CTGGTCTTATCAGGGATTGTATGGTCTTATCCAGTGAGGTCAGGTCAGGTAAGTGAGGCCGAGAG
CGAGTGAGATATTCCGGGAGTCGAAAGGGCGATGATGGCTTTCTTTTTCACCTTCCCATGATCCC
CTCCGGGGGCCGAACACACAGTGAAAGAAAGATTCGTACCAGTTTAGTGATAACCTCATGGTTGA
TGGATGGAAGGATAGATGGATGGACCCGAATGAATCCATGAATGA
Right flanking sequence: Indices 215009 -- 215508
ACCGAATGAATGAACGTCCTAGTTGGGAAATCAGAAGAGCATAGCCAATAAACACGCGATGATGA
GTTGTGTTATACACGTGGATATACTTACACGCATTATTATTATCGCTATTACTTTACACACGCGG
GCGCCTAGCGCGTTGAGGTTGGTTGAATGGAGGGATACTACCCCCATGAGGCTGGGTTGAAGGAT
CGCCACAGCTTGCTTTATTGTTACCCGCTACATACTATTTTTTCCCTTGCGTTTAACCCGCCGCT
TAATCAGGACAGAAGCTTCGAACCTTGAGGTTGCTTGGATAGATGATCAACACTTGCCCATGATC
GCTATCGCTTGCCGGAATAGTCACCAGTTAATCGAGATAACGCTCATGCTCGAAGGAAAGATCAC
TAACGCTTGACCACTTGTCGAAGGATTGACACAGCTTGATGAGGAGGTTGGAAGGATTGCTACAA
CTGCTTGCTTGCTTTGTTACCGCTAAGAAATCGTTCCCCCGGAAA
Found at i:216741 original size:22 final size:22
Alignment explanation
Indices: 216666--216741 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
216656 CCGACCCCGA
* * * *
216666 TACTGAATCGTTACCCCATTTC
1 TACTAAATCATTATCCCAATTC
**
216688 TACTAAATCA-TAGTCCCAGCTC
1 TACTAAATCATTA-TCCCAATTC
216710 TACTAAATCATTATCCCAATTC
1 TACTAAATCATTATCCCAATTC
216732 TACTAAATCA
1 TACTAAATCA
216742 GAGTCCCCAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
21 2 0.04
22 41 0.91
23 2 0.04
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (22 bp):
TACTAAATCATTATCCCAATTC
Left flanking sequence: Indices 216166 -- 216665
GGTTTCTTATACACTTGTAGGCAGCGTTCTTAATATGCTGGCCGGGATCAATCACTCAACAGAAA
GAATAGGTGGTGTATCGAAGAAGGTAGGTGTGCTGCTTGCTTGTTTGCTTGACCTTTTGGAAAGA
ATTGTGCCCCCATCAATTTACCCACTTTAACTTGATAGAAGCTTCTACCCTTCAGGTTGGTCAGA
TCAATATTGCTTGACCCTTTGCCTGGACATCCTGGAATAGTACCCACAAAAGCTTTTCAACATTA
CAAATCACTTACACCCTCCATCTATAAATACACCTCGATCACATGGACAACAGATTAGGACATTA
ACACAAGCCGGGAATACTACAGACTACGCCTCACCCCTGGTGGAAGTAAAATAGGGGTGAGCTCT
TCTTCGTTTTCCTTAGATTCTCTTTGATAGGAGGATCACCTTCCGCTTTATGTTCGCGTTATGAT
ACGCTTTTTGTCCGATGGCCGCTTTACTTTACCTACCGACCCCGA
Right flanking sequence: Indices 216742 -- 217241
GAGTCCCCATTCGAATAAACCAGAGCTTCGACCCTTGAGCTTGCTTGGTCGGACCATGAGCTTGA
TTGGATTGATCACAACCCTTCTGATCCGCTTGCATACTACCCCTCGGATTTCATCACTATACAAT
GACTTGAACCTTGGCTAGGCCCCCTACACCCCCTATTTCCTGCGACAAGTCTTGGATGCTAAACA
GGCTTTAAGCTGCTTTCTACAGGATCTCATTTTAGTCCATCCGAAAAAGAAACAGGACCTTTCAC
TTGCTCCATGAGATAAACCTGGCGGAAAGAAAGAGCGTGTCCGGTTAGGTCTTATCAGGGAAGGT
CCAGTTAGGTAAGGAGTCAGGACGAGAAGAGTCAATACGGGTGAAACCTCTGGACAAAGAGAGAT
TGATCGCTTATTCCCAGGATGCGGGGGGTCAAGAGAGATAACAACTCACCCTGTTATGATGGATG
TGTTAAGAAGAACCTGTTGATTGCGAGTAGCGAACCTGTGGTTGA
Found at i:216748 original size:22 final size:22
Alignment explanation
Indices: 216680--216753 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
216670 GAATCGTTAC
*
216680 CCCATTTCTACTAAATCATAGT
1 CCCAATTCTACTAAATCATAGT
**
216702 CCCAGCTCTACTAAATCATTA-T
1 CCCAATTCTACTAAATCA-TAGT
*
216724 CCCAATTCTACTAAATCAGAGT
1 CCCAATTCTACTAAATCATAGT
*
216746 CCCCATTC
1 CCCAATTC
216754 GAATAAACCA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
21 1 0.02
22 41 0.93
23 2 0.05
ACGTcount: A:0.31, C:0.32, G:0.05, T:0.31
Consensus pattern (22 bp):
CCCAATTCTACTAAATCATAGT
Left flanking sequence: Indices 216180 -- 216679
TTGTAGGCAGCGTTCTTAATATGCTGGCCGGGATCAATCACTCAACAGAAAGAATAGGTGGTGTA
TCGAAGAAGGTAGGTGTGCTGCTTGCTTGTTTGCTTGACCTTTTGGAAAGAATTGTGCCCCCATC
AATTTACCCACTTTAACTTGATAGAAGCTTCTACCCTTCAGGTTGGTCAGATCAATATTGCTTGA
CCCTTTGCCTGGACATCCTGGAATAGTACCCACAAAAGCTTTTCAACATTACAAATCACTTACAC
CCTCCATCTATAAATACACCTCGATCACATGGACAACAGATTAGGACATTAACACAAGCCGGGAA
TACTACAGACTACGCCTCACCCCTGGTGGAAGTAAAATAGGGGTGAGCTCTTCTTCGTTTTCCTT
AGATTCTCTTTGATAGGAGGATCACCTTCCGCTTTATGTTCGCGTTATGATACGCTTTTTGTCCG
ATGGCCGCTTTACTTTACCTACCGACCCCGATACTGAATCGTTAC
Right flanking sequence: Indices 216754 -- 217253
GAATAAACCAGAGCTTCGACCCTTGAGCTTGCTTGGTCGGACCATGAGCTTGATTGGATTGATCA
CAACCCTTCTGATCCGCTTGCATACTACCCCTCGGATTTCATCACTATACAATGACTTGAACCTT
GGCTAGGCCCCCTACACCCCCTATTTCCTGCGACAAGTCTTGGATGCTAAACAGGCTTTAAGCTG
CTTTCTACAGGATCTCATTTTAGTCCATCCGAAAAAGAAACAGGACCTTTCACTTGCTCCATGAG
ATAAACCTGGCGGAAAGAAAGAGCGTGTCCGGTTAGGTCTTATCAGGGAAGGTCCAGTTAGGTAA
GGAGTCAGGACGAGAAGAGTCAATACGGGTGAAACCTCTGGACAAAGAGAGATTGATCGCTTATT
CCCAGGATGCGGGGGGTCAAGAGAGATAACAACTCACCCTGTTATGATGGATGTGTTAAGAAGAA
CCTGTTGATTGCGAGTAGCGAACCTGTGGTTGAGCGAGAAACGAG
Found at i:217610 original size:15 final size:15
Alignment explanation
Indices: 217590--217624 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
217580 ACATAGCGCT
217590 CTGGTGCTGCTGCTG
1 CTGGTGCTGCTGCTG
*
217605 CTGGTGGTGCTGCTG
1 CTGGTGCTGCTGCTG
217620 CTGGT
1 CTGGT
217625 TGTAATGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.23, G:0.43, T:0.34
Consensus pattern (15 bp):
CTGGTGCTGCTGCTG
Left flanking sequence: Indices 217090 -- 217589
GAGAAGAGTCAATACGGGTGAAACCTCTGGACAAAGAGAGATTGATCGCTTATTCCCAGGATGCG
GGGGGTCAAGAGAGATAACAACTCACCCTGTTATGATGGATGTGTTAAGAAGAACCTGTTGATTG
CGAGTAGCGAACCTGTGGTTGAGCGAGAAACGAGTCGAACGGTTAGCTTTATATATGCTGCATTG
GTGTATCAGGGCGGGATCCACCAGTACGGGTACGCTTAGGAGAGTCAGAACGGGAGTCGAAAGAA
AGGAAAGGGCGATGGCTTTGTAACCTTCCCTTGATCTCCTCCGGAGGCCGAACCACGTTAGTAAG
GGAGGGAGTAAACAACCTACCCTACCATGGGCCCACGATCGGAACATTGTTCCTAATTTGCTTAA
GCCTCACTACCGGAACATTGTTCCTCGTACGCTTAAACTTAACGGAACCTTGTTTCTCTTACGCT
GATCTTTATCGCCTACCTTTTGGGAGGGGAATGATACATAGCGCT
Right flanking sequence: Indices 217625 -- 218124
TGTAATGCTGCTTCGACCGATGCTAGGAATTTAGCTCGTTCAACTGCTCATTGGAATGATGCCCG
TTCAACTGCTTATGGAGATTATCCTGGGGATGCTGGAACGAATGCTGCTTCAAATGCTGGGACTA
AGGCTGCTGATTCCGCTGGAACTACTTCTTTGCCTCCCTCTCCCTTCCCCTTCCTTCTACTCCTT
CCTTATACAGAGGAGAAATATAGGGAATATGTTACGCTAACGCTCAGGTCCTACCGCCTTACTCG
TTGGGGAATGAGCAACGATCCGTGGTTGGTGGTGGAAGAAAGAAACCAAGTTGTGTGAGTCGGGT
GGGTAGGTACACCGAGTACGCGAAACCATGATACTTATTTGATTCTTACAATGATCCTGCTTGCT
GGCCGGGAAGGAGCCCACTAAGAAGGGGACCGAACAAGTGGAAGGAGTGTGAGGTGGTGCTTTTA
TTATTTTGGGTGGATATGCACATATCTAATGCAATATGATAAACT
Found at i:221258 original size:14 final size:14
Alignment explanation
Indices: 221239--221267 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
221229 GAGGGAAGCT
221239 AGAAGCCTTTAGCC
1 AGAAGCCTTTAGCC
221253 AGAAGCCTTTAGCC
1 AGAAGCCTTTAGCC
221267 A
1 A
221268 AGCCCACCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (14 bp):
AGAAGCCTTTAGCC
Left flanking sequence: Indices 220739 -- 221238
ATTCGTAAATCCGGATTCCATGGGCCCTGTCTTTCTGTCTGTCTCCTTCCCATCCTCTTGGTGGG
GCCTTGCTCATACCAGATAAAACTGGAGAAAACTAGATGGATACCCCCCGAATTCCCGGACCCAT
TGCACAAGCACAAAACACTCATGCATTGCCATCCACCCCCACGAAGAACACAACAAATACAGACA
GAAGTGAAAGGAACGACAAGCCAGGGCAACAAGATGCCGAATAGGAAGGTAGGGCCATATAGGAG
GGGGAAGATAGAGCCCAGCTGGGAGAAGGGGGACTAGTTTCCTTCTTTCTGGGTGAGTTGTATTT
ATCCCCATAGCCAACCGGCACAATGAACTCGGGACGCTTCGCTTCTGCCTTTCATTTTATACCCC
CAATCGGGGGAGCCCGGTGCACTATTTATAAATTTATTTGTATCCCGATGAGGAGGTGGAGTTGG
ATGAGTCACTATACCGGAGTCACAAACACACCAGGGAGGGAAGCT
Right flanking sequence: Indices 221268 -- 221767
AGCCCACCAGAAGTAAAAAGCCTAGAACACCAAAGCCACCAAGGCCGGCAGGGGATACACTAAGA
CAGCACAACAAGTTCTTGGGACACAGTAACAACCAAAAGCAGTTTCACTACCCGCCTTCTCTCTT
TTATCTTTATATACCTTATATCTTCGATTTTTATACCTGCCCTGATGTATTTCCTTGACTGGATG
GCAGGATCACTGGGTCAGCCGAATGGGTATGAGGGAGGAGAGGGAGGCAGAACCCGCATCAAATG
GGTCGGCAACGTGCAAATATGGCCTTTTAAAATATATGCATATGGGGATTCTATATAAGCTGTTG
GAGGATCAGTATTAGATCTTTAAAGTGCATTATTTGAATTCTGAATCAACAGGGTCAGGATCAAG
ATCGGAAATACGCCTGCCTGCTTTAACCCAAACATACAAAAATCTAGCCAGTAGGCACGTAAGTA
AGCGCGCCTGTTCTTTAGCTATTGTATTTTCTACGCTATTCTGTA
Found at i:221905 original size:14 final size:14
Alignment explanation
Indices: 221886--221912 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
221876 CAATCTGATC
221886 AATAACTCCTAATA
1 AATAACTCCTAATA
221900 AATAACTCCTAAT
1 AATAACTCCTAAT
221913 CGGTGACCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAACTCCTAATA
Left flanking sequence: Indices 221386 -- 221885
GCCTTCTCTCTTTTATCTTTATATACCTTATATCTTCGATTTTTATACCTGCCCTGATGTATTTC
CTTGACTGGATGGCAGGATCACTGGGTCAGCCGAATGGGTATGAGGGAGGAGAGGGAGGCAGAAC
CCGCATCAAATGGGTCGGCAACGTGCAAATATGGCCTTTTAAAATATATGCATATGGGGATTCTA
TATAAGCTGTTGGAGGATCAGTATTAGATCTTTAAAGTGCATTATTTGAATTCTGAATCAACAGG
GTCAGGATCAAGATCGGAAATACGCCTGCCTGCTTTAACCCAAACATACAAAAATCTAGCCAGTA
GGCACGTAAGTAAGCGCGCCTGTTCTTTAGCTATTGTATTTTCTACGCTATTCTGTAATCTGTAT
ATATACGTATATAACATTGTGTGTGTCAGTATCGGTATCTGTTGCCGTATCCGTTGCCGTAGTAG
TATCCGTAGTATCCGTATCCGCTCATGTTGGCAATCAATCTGATC
Right flanking sequence: Indices 221913 -- 222412
CGGTGACCTGACACACTCGGGATGGGTAATGTTTCGACGTATATAGACTTAACGTATTCGGTATA
GGGTTGAGGATATAGGTTGGTTTATGGCACACTTGTAAGACGTGTACTGTGTGGCGCGTTGCTTG
GTATACGTGGCCTGGGCGGTATCCTTCCTTCTTCCTTACGTGTACTGGGTCTTGGGTGACGTGTG
GGGATGCGTGGCGGTAATGGTAGAATGAGAGAATGCTGGGAGACTGGGATAATGTGGGGATGGGA
GGCTGCGGGCGTGAATGGGAGAATGGTCTACTGTTATACGAGACTGGGAGAATGCGGATTGAATG
GGGAATGGTAGAATGCTGGTAGAATGCTGGGAGACTGGGAGCGGATTGAACGGAATGCGTGAATG
TGTAATGCGGTAATGCGGTAATGGAAATGTGTCAATGTGTGAATGCGGTCCAGCCAGGTAGGAGC
GTGTGTTCCGTCTCGGTAAGTGAAAGAGTATTGAGTAGCTGTAGT
Found at i:222259 original size:11 final size:11
Alignment explanation
Indices: 222243--222267 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
222233 GAATGGGGAA
222243 TGGTAGAATGC
1 TGGTAGAATGC
222254 TGGTAGAATGC
1 TGGTAGAATGC
222265 TGG
1 TGG
222268 GAGACTGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.40, T:0.28
Consensus pattern (11 bp):
TGGTAGAATGC
Left flanking sequence: Indices 221743 -- 222242
ATTGTATTTTCTACGCTATTCTGTAATCTGTATATATACGTATATAACATTGTGTGTGTCAGTAT
CGGTATCTGTTGCCGTATCCGTTGCCGTAGTAGTATCCGTAGTATCCGTATCCGCTCATGTTGGC
AATCAATCTGATCAATAACTCCTAATAAATAACTCCTAATCGGTGACCTGACACACTCGGGATGG
GTAATGTTTCGACGTATATAGACTTAACGTATTCGGTATAGGGTTGAGGATATAGGTTGGTTTAT
GGCACACTTGTAAGACGTGTACTGTGTGGCGCGTTGCTTGGTATACGTGGCCTGGGCGGTATCCT
TCCTTCTTCCTTACGTGTACTGGGTCTTGGGTGACGTGTGGGGATGCGTGGCGGTAATGGTAGAA
TGAGAGAATGCTGGGAGACTGGGATAATGTGGGGATGGGAGGCTGCGGGCGTGAATGGGAGAATG
GTCTACTGTTATACGAGACTGGGAGAATGCGGATTGAATGGGGAA
Right flanking sequence: Indices 222268 -- 222767
GAGACTGGGAGCGGATTGAACGGAATGCGTGAATGTGTAATGCGGTAATGCGGTAATGGAAATGT
GTCAATGTGTGAATGCGGTCCAGCCAGGTAGGAGCGTGTGTTCCGTCTCGGTAAGTGAAAGAGTA
TTGAGTAGCTGTAGTACCTCCGTTTTGTATCGATAAGCTTTCCATCGCGTAGGTTGTATCGTTCT
TTGCCCTTGCCAACGCCATTGAGTATCCCCCTTGATTAGGTGCCTTCCTCCCTGTGTCAACTGAC
TGGTCTGGAGTTTCATGAGGTTCTCCCATGTATTGGCTAGTGTAAATTGGTACCTCCTGTGACTG
CTGGGCTATCGGCTGACTGTTTCCCGGTTGGCATGGGCTATGCGTATACGGGGTTGTAGTTTATA
TCTAGTGCCGTGCTGTAACCGTACCCATCTGTGTGCCGTTGCCGTTGCTGCCGTAGCCGTAGTAG
CCGTATCACTAAGTGCAGGTAGGACCTCATGTTCCGTATCGTTCA
Found at i:223096 original size:18 final size:18
Alignment explanation
Indices: 223073--223136 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 18
223063 GGTCTCAAGT
*
223073 AATTGGTCTCAAGAAGGC
1 AATTGGTCTCAAGAAGGA
** * *
223091 AATTGGTAGCAAGAGGGT
1 AATTGGTCTCAAGAAGGA
* * *
223109 AATTGGGCTCAACAAGTA
1 AATTGGTCTCAAGAAGGA
223127 AATTGGTCTC
1 AATTGGTCTC
223137 GACTAACCCA
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (18 bp):
AATTGGTCTCAAGAAGGA
Left flanking sequence: Indices 222573 -- 223072
ATTGGTACCTCCTGTGACTGCTGGGCTATCGGCTGACTGTTTCCCGGTTGGCATGGGCTATGCGT
ATACGGGGTTGTAGTTTATATCTAGTGCCGTGCTGTAACCGTACCCATCTGTGTGCCGTTGCCGT
TGCTGCCGTAGCCGTAGTAGCCGTATCACTAAGTGCAGGTAGGACCTCATGTTCCGTATCGTTCA
GTGACCGGGGGGGTGTAAATAGCTGAACCCTGTGCATCCCGTAGGATAGTTACTGGAGCTAAAGG
AATTGGTAACAACAAGGATAATTGTATATTGACTCGTGCTATCGGAATCGGTAACAACAAGGTAC
TGGGGCTATGGGACTGGGGCTCAACTAGGAATGGGTAGTAATTGGGCTATTGGAATCGGGATCAA
GAAGGTAATTGTTCCCAAGAAGGCAATCGGCATCAAGAAGGCAATTGGTTACAACTAGTTAATTG
TCCTAAACAAGTGAATTGGGAGCAACAGGTTAATCGGTCTCAAGT
Right flanking sequence: Indices 223137 -- 223636
GACTAACCCAGGCAAGTACTACCAGCTCTATCTCGGCAATGATCTACGGCAATGAGGTTCAATGG
TGGAATGATTTCCTATGGGCTGACTGGCATAGACCGGTGGGTATGGGCTATCGGCTTACAATGAT
TGGCTATCAATACAATGACCTGACTATGAGCACTGGCTATGATTGGTTGGCTATGACCACCAGGC
AATGACCTCCTAATGACTGACCTCCCGGCAATGAAAACTGGCTTCTATCGGTGACCACCCTATCT
CTGGCAATGACCCTTTGGCAAAGATCCTAAGGCAATGACTGTAAAGGATCAGCTATTAGATACCC
TAAGGCTGTGGCTCACTCGGCCCCCGTACTATGTTGGGTGTCTGTTACATGTGGTGAAGGTGATT
CCGGTATGTGGGAACTTGGGGTAACATAATCTATCTCGTATCGTGTAAACACGGGGGAACTAACT
CAATCTCATTCCATGGAAAAATGGGGGACTTATCCTCTCTCGGTT
Found at i:229770 original size:52 final size:54
Alignment explanation
Indices: 229693--229799 Score: 155
Period size: 52 Copynumber: 2.0 Consensus size: 54
229683 GGCTTGCCTA
*
229693 TTTATATTGATATTTAGATCAATATAAATA-TT-GATAAGTACGCGCCCCTATT
1 TTTATATTGATATGTAGATCAATATAAATATTTAGATAAGTACGCGCCCCTATT
* ** *
229745 TTTATATTGATATGTATATTTATATAAATATTTATATAAGTACGCGCCCCTATT
1 TTTATATTGATATGTAGATCAATATAAATATTTAGATAAGTACGCGCCCCTATT
229799 T
1 T
229800 ATAAGTAGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
52 26 0.54
53 2 0.04
54 20 0.42
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (54 bp):
TTTATATTGATATGTAGATCAATATAAATATTTAGATAAGTACGCGCCCCTATT
Left flanking sequence: Indices 229193 -- 229692
TTCCTTGTTGGGCCATTCACTGGAAATACGCTCCAGCGACGTTATCCCTTACCCTTCGCTCGCTA
TGCTCAGGCTAAGTGCCTTATCGGGATTATTTCCGAGCCTGAGGCTCTGATCGATCGCTAGTTAC
GAAGCTATTCGAGGTCCACTGGTCTCGGGAGGGCTTATCACAGTCAGGTGCGGGGCAATTGCCCC
TACCCCTATATGACAATAATAATAGGGGTGGGGCGAGATGAACCGAGGTTTCGTTCGCCACGGCT
CCCCCATTAACTTGTCCGGTGAAGATAGTGGGGCTAAAAAGCCAAAACTACCTTCGTCATTAAGG
TTGCCCCTCCCTATTTATTAGGCGTAACGTATTGAAAGCCAGTAAGTAAGTCCATTGTGTACAGG
CATAACCCCCTTTATTTCCAATAATATAATTAAGAATATGCGAAACAAACATACATTTTTATTTA
CGAGTTGCGCATATTGCTGTTTCACCGAGTGGGTGGGCTTGCCTA
Right flanking sequence: Indices 229800 -- 230299
ATAAGTAGCTAGCTCGGAAGCGGGAGCAGAAAAAAATATATTTCTCGCTGGCTATTCCGGCCACT
TTTCTATGTAAGTAATATTAGACCGTAAAGGTAAGGTTATGAATTTGTGGAGGTTCAGAATTTGT
GCATGCACTATAGATCTATCTATAGTGCCTACACAAATTCTGTTCTGCCTGTAGCGCCCGCCCCA
TTTTTATCATATCATGTAGTAGCAGATCTCGCTCAACAAGCGAGAGAATGGGAACTAGGGAGGGG
TCTGGAGCAAAAAGCGCTATGCAGCATCAGTAATACCTATCGGTTAGACCTATAGTAGCGAGGGG
TATAACCTTGCGGCGAGGATAACCGGGGGAGGGATAACCCCTCGCGGACCGGTTCTTTCAGTCAA
CTGAGTTCTGTCTGGACGAATCAGCTTCTTGTCCAACTGGTAATGGCTCAATCTATAGATAGAGA
GCCTTATGATGGGAAACTATCACGTTAGGTTTGGAGAGAGAAAGA
Found at i:230753 original size:21 final size:21
Alignment explanation
Indices: 230729--230861 Score: 97
Period size: 21 Copynumber: 6.0 Consensus size: 21
230719 AAGTAAAGTA
230729 AGGCGTAACGTATTGAAAGCT
1 AGGCGTAACGTATTGAAAGCT
* * *
230750 AGGCGTAGCATATTTAAAGCT
1 AGGCGTAACGTATTGAAAGCT
* *
230771 AGGC-CATAGGTATATTGAAAGCT
1 AGGCGTA-ACG--TATTGAAAGCT
* *
230794 AGGAGTAACTAATGTATTAGACAGGCT
1 AGGCGTAAC----GTATT-GA-AAGCT
* *
230821 AGGCGTAGCATATTGAAAGCT
1 AGGCGTAACGTATTGAAAGCT
230842 AGGCGTAACGTATTGAAAGC
1 AGGCGTAACGTATTGAAAGC
230862 CAGTAAGTAA
Statistics
Matches: 84, Mismatches: 18, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
20 1 0.01
21 44 0.52
22 2 0.02
23 18 0.21
24 1 0.01
25 4 0.05
26 2 0.02
27 12 0.14
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.25
Consensus pattern (21 bp):
AGGCGTAACGTATTGAAAGCT
Left flanking sequence: Indices 230229 -- 230728
GTAATGGCTCAATCTATAGATAGAGAGCCTTATGATGGGAAACTATCACGTTAGGTTTGGAGAGA
GAAAGATGGTCTGGGGGAGCAGGAGCAAGCTTGTCCAAAGAACGGCCTGCCTGAATGACTACGGG
ATCATCAGTCTACTCTACCTCAATTCACCATTTTGAACCCCATACAGAAGGTTTTTCCGTACCAG
CTTCTTCTACCCATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTGTGTTTCTGGTCAGTAAT
GGAAGCAATCGTCCCTATCGTCGTAGAATAAGAGCACCTGGCTCTGCCCATTTACAAGGACTCGA
TTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATAATTGGTACTCAAGATATTGTGT
TTGGAGAGGTAGATAGATAGGACGGACTACTAGTTGCCGGGCCCTAGCTTTATTGCGAGCCAGAA
ACAACCTCACCTCCCTCAAAGATGGATGCGTATGTAAGTAAAGTA
Right flanking sequence: Indices 230862 -- 231361
CAGTAAGTAAGGCGTAGTAACGTATTGAAAGCCAGTCGCGTAAGTCGAGTAAGTCGAGTAAGTCG
AGTAAGTCGAGTAAGTCGCGTAAGTAAGCAAGCGGGTGGAAGGAGAACCTGAAAAAGAATTTTCG
TTTCAAATGAATAAATAGGAAAGAAATGAATGAATGGGAAATGGAGATGGATGAACAATTTCTGG
CTGGAAAGATAAGGAAATAGATAGATGGAGGCGCAATCCTCATATTTCCGCGATTGATTAAGGGG
TGGGGGGGCCGAAGTGAGCGAATTGCATGTAGAGAGAATCGTAGGGGCTTATAGTTTAATTGGTT
GAAACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCTATTCCTTTCTTTC
CCCTACAGTAACAGTATAAGTCCCCGCTTCCGAACAAAGAGAGGATAGTAACCGGGCTTACTTGC
TATATCCCTGCCTGCAGAGCAGTGTGAATTTGTGTAGGCTTTCAG
Found at i:230913 original size:9 final size:9
Alignment explanation
Indices: 230895--230951 Score: 96
Period size: 9 Copynumber: 6.3 Consensus size: 9
230885 ATTGAAAGCC
*
230895 AGTCGCGTA
1 AGTCGAGTA
230904 AGTCGAGTA
1 AGTCGAGTA
230913 AGTCGAGTA
1 AGTCGAGTA
230922 AGTCGAGTA
1 AGTCGAGTA
230931 AGTCGAGTA
1 AGTCGAGTA
*
230940 AGTCGCGTA
1 AGTCGAGTA
230949 AGT
1 AGT
230952 AAGCAAGCGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (9 bp):
AGTCGAGTA
Left flanking sequence: Indices 230395 -- 230894
ACCCCATACAGAAGGTTTTTCCGTACCAGCTTCTTCTACCCATACCGCAGTTGAAGCACCTAAAG
GAGAATTTGGTGTGTTTCTGGTCAGTAATGGAAGCAATCGTCCCTATCGTCGTAGAATAAGAGCA
CCTGGCTCTGCCCATTTACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGT
CACCATAATTGGTACTCAAGATATTGTGTTTGGAGAGGTAGATAGATAGGACGGACTACTAGTTG
CCGGGCCCTAGCTTTATTGCGAGCCAGAAACAACCTCACCTCCCTCAAAGATGGATGCGTATGTA
AGTAAAGTAAGGCGTAACGTATTGAAAGCTAGGCGTAGCATATTTAAAGCTAGGCCATAGGTATA
TTGAAAGCTAGGAGTAACTAATGTATTAGACAGGCTAGGCGTAGCATATTGAAAGCTAGGCGTAA
CGTATTGAAAGCCAGTAAGTAAGGCGTAGTAACGTATTGAAAGCC
Right flanking sequence: Indices 230952 -- 231451
AAGCAAGCGGGTGGAAGGAGAACCTGAAAAAGAATTTTCGTTTCAAATGAATAAATAGGAAAGAA
ATGAATGAATGGGAAATGGAGATGGATGAACAATTTCTGGCTGGAAAGATAAGGAAATAGATAGA
TGGAGGCGCAATCCTCATATTTCCGCGATTGATTAAGGGGTGGGGGGGCCGAAGTGAGCGAATTG
CATGTAGAGAGAATCGTAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTGAT
ATTGTAGGTTCGAGCCCTACTAAGCCTATTCCTTTCTTTCCCCTACAGTAACAGTATAAGTCCCC
GCTTCCGAACAAAGAGAGGATAGTAACCGGGCTTACTTGCTATATCCCTGCCTGCAGAGCAGTGT
GAATTTGTGTAGGCTTTCAGGGAGCATAGCGAAGGGAAGGTTATCCCTTTGCTTGCTTCCTTCGC
TTCGAAGGAAGGAAGGGAGGTAAGGTTATCCTTACCCGCCGAGCT
Found at i:231020 original size:19 final size:19
Alignment explanation
Indices: 230996--231032 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
230986 TTTTCGTTTC
230996 AAATGAATAAATAGGAAAG
1 AAATGAATAAATAGGAAAG
* *
231015 AAATGAATGAATGGGAAA
1 AAATGAATAAATAGGAAA
231033 TGGAGATGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.16
Consensus pattern (19 bp):
AAATGAATAAATAGGAAAG
Left flanking sequence: Indices 230496 -- 230995
ATCGTCCCTATCGTCGTAGAATAAGAGCACCTGGCTCTGCCCATTTACAAGGACTCGATTCTATG
TCCAAACATCACATGCCAGCAGATGTGGTCACCATAATTGGTACTCAAGATATTGTGTTTGGAGA
GGTAGATAGATAGGACGGACTACTAGTTGCCGGGCCCTAGCTTTATTGCGAGCCAGAAACAACCT
CACCTCCCTCAAAGATGGATGCGTATGTAAGTAAAGTAAGGCGTAACGTATTGAAAGCTAGGCGT
AGCATATTTAAAGCTAGGCCATAGGTATATTGAAAGCTAGGAGTAACTAATGTATTAGACAGGCT
AGGCGTAGCATATTGAAAGCTAGGCGTAACGTATTGAAAGCCAGTAAGTAAGGCGTAGTAACGTA
TTGAAAGCCAGTCGCGTAAGTCGAGTAAGTCGAGTAAGTCGAGTAAGTCGAGTAAGTCGCGTAAG
TAAGCAAGCGGGTGGAAGGAGAACCTGAAAAAGAATTTTCGTTTC
Right flanking sequence: Indices 231033 -- 231532
TGGAGATGGATGAACAATTTCTGGCTGGAAAGATAAGGAAATAGATAGATGGAGGCGCAATCCTC
ATATTTCCGCGATTGATTAAGGGGTGGGGGGGCCGAAGTGAGCGAATTGCATGTAGAGAGAATCG
TAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCC
CTACTAAGCCTATTCCTTTCTTTCCCCTACAGTAACAGTATAAGTCCCCGCTTCCGAACAAAGAG
AGGATAGTAACCGGGCTTACTTGCTATATCCCTGCCTGCAGAGCAGTGTGAATTTGTGTAGGCTT
TCAGGGAGCATAGCGAAGGGAAGGTTATCCCTTTGCTTGCTTCCTTCGCTTCGAAGGAAGGAAGG
GAGGTAAGGTTATCCTTACCCGCCGAGCTATGCTCAGGTAGGTAAGGATAACCTTACCGGGTTCA
ATTTAGAGGGTATAACCAACCCTTCGCAGAGCTCAGGTAAGGTCA
Found at i:234597 original size:14 final size:14
Alignment explanation
Indices: 234578--234622 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
234568 TTATTTCTAC
234578 TTACCATGAGTCCA
1 TTACCATGAGTCCA
234592 TTACCATGAGTCCA
1 TTACCATGAGTCCA
*
234606 TTATACA-GAGTCCA
1 TTA-CCATGAGTCCA
234620 TTA
1 TTA
234623 GAAAGAGTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 27 0.93
15 2 0.07
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (14 bp):
TTACCATGAGTCCA
Left flanking sequence: Indices 234078 -- 234577
TATCTCAGTTATACCCCGCTGTTTCACCCGTTCGCATGCCTTCGATTTACCGTATCAAACCTACC
TATCATTAGCGTTATTGGCTTATACTGGGCATTCGGTAAAGAGCAAGCTTATGTCAAGCGGGTAC
GATACCTGAAAGACATACTCTCTGAAGCTTGAAACCAGTATACCCAGTATACCAAAGCCCTGCTA
GGCGATAGTGGAAGCAATAGGCTACCCAAAGCATGTAAACAGTAAGCAAGCTTATAGGCACACAC
ACCCAAGCGTAGCGCTCTATAGTCAGATATCGTACTCTGATAGTGGGTATAAGCGATAGTGGGAG
TTGTGTAGACAGATTGGACATAAGTACCCCAAACACACACACTTGGCACACTAGGCGTTAGGTAG
AAAGCCCTGCTAGGCACACACTAGGTAGACAGCGCTAAAACGTATAGTGGGCTAACGTACCCCAA
CTAGGAACTCAAGCGGGTACGATACCTGACAGACTTTATTTCTAC
Right flanking sequence: Indices 234623 -- 235122
GAAAGAGTCCAAAACCAGTCCATGGGTATGCAAGCCCTGAGAGCGCTCTAAAGCGTGTGTAGTAG
AGCAAGCTTAGGACAGAGGGTACGATATACTTGCCTTTCTTTCTCTCTACTTACCGCATGAGTCA
AAAACCAGTCAAAGGGTATGCAAGCTCAGATATCGTACCCCAAGCGTAGCGCTTCTAACGTACTC
TAAAGGGCGTATGGTAGACAAAGTGGGAGTAAAGGGTAGGCAAGTCAGATATCGTACCACAAGTG
TAACGCTCTCTAGGTAAGCTTAAGAGTGGTTCGTTACTTACCGTACTTTCTTTCTACTTACCTTA
GTAAAGAACCGGCTGTGGTACGCGTGCTCTGATAACGTTGGTAAACAGTGCTAGCGCATAGTGGC
AGCTAAGGGCAAGTATCGTACCTTTGATAGTGGCAGCTTGGGTAGAATAACGTACTCTAGGCAAG
ACGAGCTCTGGTTCGATAGTACTTTCCTTTCTTTCTACTTACCAC
Found at i:234629 original size:14 final size:14
Alignment explanation
Indices: 234585--234633 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
234575 TACTTACCAT
* *
234585 GAGTCCATTACCAT
1 GAGTCCATTACAAA
* *
234599 GAGTCCATTATACA
1 GAGTCCATTACAAA
*
234613 GAGTCCATTAGAAA
1 GAGTCCATTACAAA
234627 GAGTCCA
1 GAGTCCA
234634 AAACCAGTCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (14 bp):
GAGTCCATTACAAA
Left flanking sequence: Indices 234085 -- 234584
GTTATACCCCGCTGTTTCACCCGTTCGCATGCCTTCGATTTACCGTATCAAACCTACCTATCATT
AGCGTTATTGGCTTATACTGGGCATTCGGTAAAGAGCAAGCTTATGTCAAGCGGGTACGATACCT
GAAAGACATACTCTCTGAAGCTTGAAACCAGTATACCCAGTATACCAAAGCCCTGCTAGGCGATA
GTGGAAGCAATAGGCTACCCAAAGCATGTAAACAGTAAGCAAGCTTATAGGCACACACACCCAAG
CGTAGCGCTCTATAGTCAGATATCGTACTCTGATAGTGGGTATAAGCGATAGTGGGAGTTGTGTA
GACAGATTGGACATAAGTACCCCAAACACACACACTTGGCACACTAGGCGTTAGGTAGAAAGCCC
TGCTAGGCACACACTAGGTAGACAGCGCTAAAACGTATAGTGGGCTAACGTACCCCAACTAGGAA
CTCAAGCGGGTACGATACCTGACAGACTTTATTTCTACTTACCAT
Right flanking sequence: Indices 234634 -- 235133
AAACCAGTCCATGGGTATGCAAGCCCTGAGAGCGCTCTAAAGCGTGTGTAGTAGAGCAAGCTTAG
GACAGAGGGTACGATATACTTGCCTTTCTTTCTCTCTACTTACCGCATGAGTCAAAAACCAGTCA
AAGGGTATGCAAGCTCAGATATCGTACCCCAAGCGTAGCGCTTCTAACGTACTCTAAAGGGCGTA
TGGTAGACAAAGTGGGAGTAAAGGGTAGGCAAGTCAGATATCGTACCACAAGTGTAACGCTCTCT
AGGTAAGCTTAAGAGTGGTTCGTTACTTACCGTACTTTCTTTCTACTTACCTTAGTAAAGAACCG
GCTGTGGTACGCGTGCTCTGATAACGTTGGTAAACAGTGCTAGCGCATAGTGGCAGCTAAGGGCA
AGTATCGTACCTTTGATAGTGGCAGCTTGGGTAGAATAACGTACTCTAGGCAAGACGAGCTCTGG
TTCGATAGTACTTTCCTTTCTTTCTACTTACCACGTGAAGAACCA
Found at i:235245 original size:18 final size:18
Alignment explanation
Indices: 235211--235245 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
235201 TGTGTAAAGC
* *
235211 AAGTAAGCACAAGCAAGT
1 AAGTAAGCAAAAACAAGT
235229 AAGTAAGCAAAAACAAG
1 AAGTAAGCAAAAACAAG
235246 CAAGCTGGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.20, T:0.09
Consensus pattern (18 bp):
AAGTAAGCAAAAACAAGT
Left flanking sequence: Indices 234711 -- 235210
GATATACTTGCCTTTCTTTCTCTCTACTTACCGCATGAGTCAAAAACCAGTCAAAGGGTATGCAA
GCTCAGATATCGTACCCCAAGCGTAGCGCTTCTAACGTACTCTAAAGGGCGTATGGTAGACAAAG
TGGGAGTAAAGGGTAGGCAAGTCAGATATCGTACCACAAGTGTAACGCTCTCTAGGTAAGCTTAA
GAGTGGTTCGTTACTTACCGTACTTTCTTTCTACTTACCTTAGTAAAGAACCGGCTGTGGTACGC
GTGCTCTGATAACGTTGGTAAACAGTGCTAGCGCATAGTGGCAGCTAAGGGCAAGTATCGTACCT
TTGATAGTGGCAGCTTGGGTAGAATAACGTACTCTAGGCAAGACGAGCTCTGGTTCGATAGTACT
TTCCTTTCTTTCTACTTACCACGTGAAGAACCAGTATGGGTGTACTTACCCTGATAGCGTGTGTA
CTAAAGCTCTATCGTGTGTAGATTGTTCTACTGCGTGTGTAAAGC
Right flanking sequence: Indices 235246 -- 235745
CAAGCTGGTAAGATAGACGAAAACGCAGGAGTAAACAGTAAGCAAGCTTATAGCGTACAAAGCAA
GTATGCGTTAGCACTGTTCTACAAAAGAAGTATGCGTTAGCACTGTTTACAAAGCGCCCCTATGC
GAAGCACTGTACTACCAAAGCGTGTGTATAATGGGAGTATAGTGGGTACAAAGGGCATCATTCCT
AGCAAAAGCAGCCTCACGACCCCTCCATCATCAATTGAACCAGCCATCTAATTCAAAGTAGCAGA
ATCAGCATCCCCAGAAGCACCAATTTAACCAAAAGAACCAGGCCAAGCATCCCCAGCAAAGGCAG
CAGCAGTTGAAGCGTAATTCCCACCAGAAGCAGCACCAGTTTAACCAGCCTCATCATTTGAACTA
GCAGCAGTTGGAGCGGCATTTCCAGGATCAGTCAAAGCACCAGTATAATAATTTCCAGCATCAAC
AGTTTCACCGGCTTCCTCATTCCCTGGAGCATTTTAAGGAGCCTA
Found at i:235334 original size:29 final size:28
Alignment explanation
Indices: 235301--235365 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 28
235291 GCTTATAGCG
235301 TACAAAGCAAGTATGCGTTAGCACTGTT
1 TACAAAGCAAGTATGCGTTAGCACTGTT
235329 CTACAAAAG-AAGTATGCGTTAGCACTGTT
1 -TAC-AAAGCAAGTATGCGTTAGCACTGTT
235358 TACAAAGC
1 TACAAAGC
235366 GCCCCTATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
27 4 0.12
28 3 0.09
29 23 0.68
30 4 0.12
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (28 bp):
TACAAAGCAAGTATGCGTTAGCACTGTT
Left flanking sequence: Indices 234801 -- 235300
GCGCTTCTAACGTACTCTAAAGGGCGTATGGTAGACAAAGTGGGAGTAAAGGGTAGGCAAGTCAG
ATATCGTACCACAAGTGTAACGCTCTCTAGGTAAGCTTAAGAGTGGTTCGTTACTTACCGTACTT
TCTTTCTACTTACCTTAGTAAAGAACCGGCTGTGGTACGCGTGCTCTGATAACGTTGGTAAACAG
TGCTAGCGCATAGTGGCAGCTAAGGGCAAGTATCGTACCTTTGATAGTGGCAGCTTGGGTAGAAT
AACGTACTCTAGGCAAGACGAGCTCTGGTTCGATAGTACTTTCCTTTCTTTCTACTTACCACGTG
AAGAACCAGTATGGGTGTACTTACCCTGATAGCGTGTGTACTAAAGCTCTATCGTGTGTAGATTG
TTCTACTGCGTGTGTAAAGCAAGTAAGCACAAGCAAGTAAGTAAGCAAAAACAAGCAAGCTGGTA
AGATAGACGAAAACGCAGGAGTAAACAGTAAGCAAGCTTATAGCG
Right flanking sequence: Indices 235366 -- 235865
GCCCCTATGCGAAGCACTGTACTACCAAAGCGTGTGTATAATGGGAGTATAGTGGGTACAAAGGG
CATCATTCCTAGCAAAAGCAGCCTCACGACCCCTCCATCATCAATTGAACCAGCCATCTAATTCA
AAGTAGCAGAATCAGCATCCCCAGAAGCACCAATTTAACCAAAAGAACCAGGCCAAGCATCCCCA
GCAAAGGCAGCAGCAGTTGAAGCGTAATTCCCACCAGAAGCAGCACCAGTTTAACCAGCCTCATC
ATTTGAACTAGCAGCAGTTGGAGCGGCATTTCCAGGATCAGTCAAAGCACCAGTATAATAATTTC
CAGCATCAACAGTTTCACCGGCTTCCTCATTCCCTGGAGCATTTTAAGGAGCCTAATTTACCAGC
CTCAGTTCCCGGGGCATCAAAGTATAGTAGGCGTCCATACGCACCAGTTGAAGCGTAATTCCAAA
GAGCATTTCCATCAGTGGAACAAGCATTCGAATCATCATTTGAAT
Found at i:241235 original size:13 final size:13
Alignment explanation
Indices: 241217--241242 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
241207 TTAAGCTAAG
241217 TCAGGGATTATAC
1 TCAGGGATTATAC
241230 TCAGGGATTATAC
1 TCAGGGATTATAC
241243 GTGGAAGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
TCAGGGATTATAC
Left flanking sequence: Indices 240717 -- 241216
TTCGCTTGGCACTTACCTTCTCAGTTGCTGGTTTTGAGTCATAAAACGCATATTTAGCGGGTCGG
ATAGCCAATACCTCATCGGGACACAGAAATAGATCTTTTCCTTATTTAACCATACCCTTACAGAT
AGTTGACCTATCCCGCCAGTCACAGCACCCGCCCCCGCTAGGCACCCCGGCCTGCATACCGACCA
TAGCTAGCATCCGCACCTGCAAACATAGAGGGTCAGTCGCACACACCCTGTTTAGAGATACTCAT
GCTGCACCTTCCTTCCTTCCGACTCTCCCTCCTTGATTGCTTCACATCGACCCATTATTTTATAT
AAATGTAATAAGACAGGCCCGGGCGTAGCAGGACAGAGACCACCCAGGAGGGCAAGCTACGATTC
CGCTTTGACCTAGGCATTGCTGCTATCTTCCATCCCCTTATGTCGGTTGAGGGCTCTTTTCCACC
CTAATTTATTTATTGGCATAGAGCGCTTTAGCCCGTTAAGCTAAG
Right flanking sequence: Indices 241243 -- 241742
GTGGAAGGGTAGGTAGGGAATAAAGGGTAGGCAATTAAAGGTAGAGGGTAGGCAGGCAAGTAAGA
GTCTCATTCAGTGAGGCAAGTAAGTGCTCCGCTCCGCTCTATAGGCAAGTGGTGTTTGTGTGCTC
CGCTCTGCTCTCTATAGGCAACTGGTGGCATCAAGCAACAAGCAAGTAAAGCAAGCAAGTAAGGT
TCTCGTATGGCCCTTACCTCACCGTATAGCTCTTAGCAGCTAGCGCTTACCTACCGTATAGGCCC
TATAGCAGCTAGCCCTACCTACCCTAGAGTTTGTATAGCCATCAGTAAGGCTAGGCAGGAGGAGG
AAGGAGGGGTGGAAGAACCCCGAGAGCTAAGCGCGGGGCTTTCTGAACCTCTACAAAACGAAAAA
TGCTTTATTATACGATATTATATGATGACCGATCCTATTTATATTATTCTTCGTACGCCTCCTAC
CTGCCTACTCACCTGCCAACCCTCGTGTGGATGCCCAGTCCTACC
Found at i:241496 original size:32 final size:33
Alignment explanation
Indices: 241449--241525 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 33
241439 CTCGTATGGC
*
241449 CCTTACCTCACCGTATA-GCTCT-TAGCAGCTAG
1 CCTTACCT-ACCGTATAGGCCCTATAGCAGCTAG
241481 CGCTTACCTACCGTATAGGCCCTATAGCAGCTAG
1 C-CTTACCTACCGTATAGGCCCTATAGCAGCTAG
*
241515 CCCTACCTACC
1 CCTTACCTACC
241526 CTAGAGTTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
32 9 0.22
33 20 0.50
34 11 0.28
ACGTcount: A:0.22, C:0.38, G:0.16, T:0.25
Consensus pattern (33 bp):
CCTTACCTACCGTATAGGCCCTATAGCAGCTAG
Left flanking sequence: Indices 240949 -- 241448
CGCACACACCCTGTTTAGAGATACTCATGCTGCACCTTCCTTCCTTCCGACTCTCCCTCCTTGAT
TGCTTCACATCGACCCATTATTTTATATAAATGTAATAAGACAGGCCCGGGCGTAGCAGGACAGA
GACCACCCAGGAGGGCAAGCTACGATTCCGCTTTGACCTAGGCATTGCTGCTATCTTCCATCCCC
TTATGTCGGTTGAGGGCTCTTTTCCACCCTAATTTATTTATTGGCATAGAGCGCTTTAGCCCGTT
AAGCTAAGTCAGGGATTATACTCAGGGATTATACGTGGAAGGGTAGGTAGGGAATAAAGGGTAGG
CAATTAAAGGTAGAGGGTAGGCAGGCAAGTAAGAGTCTCATTCAGTGAGGCAAGTAAGTGCTCCG
CTCCGCTCTATAGGCAAGTGGTGTTTGTGTGCTCCGCTCTGCTCTCTATAGGCAACTGGTGGCAT
CAAGCAACAAGCAAGTAAAGCAAGCAAGTAAGGTTCTCGTATGGC
Right flanking sequence: Indices 241526 -- 242025
CTAGAGTTTGTATAGCCATCAGTAAGGCTAGGCAGGAGGAGGAAGGAGGGGTGGAAGAACCCCGA
GAGCTAAGCGCGGGGCTTTCTGAACCTCTACAAAACGAAAAATGCTTTATTATACGATATTATAT
GATGACCGATCCTATTTATATTATTCTTCGTACGCCTCCTACCTGCCTACTCACCTGCCAACCCT
CGTGTGGATGCCCAGTCCTACCTAGGCCCCTTCAAAGAACAGCATTCCCAGCATCAGTTCCCGGG
GCACCAATTGAACCACCTTCATAAGTTGAAGGCACATTATTCCCAACTTAATTCCCAGCAGCATT
TGAACCATATGAACCTGAAGTAATTCGTTCCAACACCAGTTTCAATGGAATTACTTCAATAAGCA
GTACCAGGAGCAGTTCCATAAGCTGTTGAAAGAGTATTACGACCAGCAGCATAACCGGTAAGCAC
ATCAAAAGAAAGCCCGGCACAAGCAGCCTCATGACAAAAGGATTA
Found at i:247384 original size:15 final size:15
Alignment explanation
Indices: 247364--247401 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
247354 TCTCATAAGC
247364 CTACTCCACTCTACT
1 CTACTCCACTCTACT
* *
247379 CTACTCCAGTCTAGT
1 CTACTCCACTCTACT
247394 CTACTCCA
1 CTACTCCA
247402 TTTCATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.21, C:0.42, G:0.05, T:0.32
Consensus pattern (15 bp):
CTACTCCACTCTACT
Left flanking sequence: Indices 246864 -- 247363
TGGTATCGTACTCCTACCCTTTACTTGATAAGGCTGGGGTGAATGCGGAATCAGGGTCGGTTTCC
TCTCAAGCCAGCTATAACACTTCTATAAGGTAGGCCGGAGATCTGACCTACGGGCTAGGTCGGCT
CCTCAAGTCCAATCAAAGAAGAAAGACAAGAGAGAGGGCAGGAGTATAACGGAATAGAAATGGAT
TGGGGGAGAGCCCCCAAAGCAGCATACTTTGGCCTGTGCTCGATTCGGATAGGTGGCTCCATACC
TTGTTCATCCTTCCCAATAACACCAGATCCTTTGTATCCAATAGCAGCATTTTATCCCCGGGGAC
CAAAACCACGCTCTTCACTTCCATTATAAACCATTCTAAACGGTTCATGGATGCATGCATCGATT
CATGAACCATTTAGAATAGACTCTCTATGGCCTATTGATTGGTTGGGAGAGCACTCGATCCTCGA
CCAAGAAAGGAGAGCGCCTAAATCTCATAAGTCTATCTCATAAGC
Right flanking sequence: Indices 247402 -- 247901
TTTCATAATAGCTTTGACCCGGATTGGAACGAATGAGCTTTGACCTGGAGCCGTTAGATATTACT
ACCCTTCCCAGCCAGCTAGGCTAAGCCAGCCAGGTACTACTGAAGATGATCCAACAGTTACTTAC
CTTGTCCGAGACGAGGCAGAAGCAAAGGCACCTAAGGCATCAGAAGCAAAGGTTGGAAAGGAAGG
AGCAGGGAATGGGTAAGGGTAGAGCGAAGGCTAGGGCAGAGGGAAAGGCAGCGTCCTTACCGGTA
GGGGCAACAAAGCAGGTAGCCAAGGTTGATTCATAACCCGTTGAAGAAGAGCCCATTGATCCAGT
TGCTCCACCACCAGCATCAGTAGCAGCGGTTCGAGATCGATATCGAGGTCCACCACCAGCAGATC
GAGATTTATATTTAGTTCAAGAGCCCGCAGCAGATCGATAGCCAATTTAAGTAGCAGCCATTGAT
CCAATTACACCCATTGATCCGCCAGTGGACTACTCAGCAGTTCCT
Found at i:249616 original size:24 final size:24
Alignment explanation
Indices: 249589--249635 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
249579 CACGGCACAT
*
249589 AACTATCCACTGCATCT-CCTATCG
1 AACTATCAACTGCAT-TGCCTATCG
*
249613 AACTATTAACTGCATTGCCTATC
1 AACTATCAACTGCATTGCCTATC
249636 CAGAACTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (24 bp):
AACTATCAACTGCATTGCCTATCG
Left flanking sequence: Indices 249089 -- 249588
GGTTCAAGCAGAAGATCCAGCATACTAACTACTAAGTCATTTTACAAAATGATGATTATATGCCT
GTGATTTCTTGTTTACCTGTCCCTTATGGTTCCACCTTTGAATGTAGTGAAACAACGGGCTGTGG
TTCTCGATATCGGTCTGTGGGCACTGGATCCATGATAGCACTCTTGGCATTATATCTCCAATGGC
TGTACTGGTAGTCATATCCAAAATGGCTAGACTGACGATATGGGCAAGGACCTCGTGGACCCTTA
AATCAATCATTGATTGGCCCCGATACAGAGCGGCTAGGGGACAGATTATGACGCTTGACTGCGGT
GATACAGAGTGGCTGGCCGACACAAGGCTTCGTGGGCTTTGTATTGGCTTTGTGGACATATAGAC
TGACGGAACCAGTTTTGCTTTATGATCAAAATTACCATTTTATCTATCACTATATGGATAAACTA
ACCTAGCCCTACTCCCTAGTCCTAGCCCCTGCTACCACGGCACAT
Right flanking sequence: Indices 249636 -- 250135
CAGAACTCAGAGAAGAGAAAGGCAGGCAGTTACATCTACCAACCAGAAGAGCCCATCTATAACTA
TGAGATGGGTGTGCTCTAGGTGAAGCTATAACTGCTATGTCCTAATAGGTAGTATATAAGTGTCT
CTGGTAGGATAGACAGGAGAAACACATCGCCTCAAACCGGAGCGCGTTGAATCGCTTCAAGTAAA
AGAGCCAGTCCAACCTGGTTCCACTACTCACGCTCAAGCTTGTTCTTACCGTTCTGCCCGTTTCA
TAGCCAGCCCCCTTTGACTGCCCCAGGTTTCCTTCGCCCAGATCCTTAGCCAACAGCAGTAGTTT
CAATTGAACTAGAATCAGTTTACTCAGCAGCTAAGGTAGCAGCATCCATAGGGAAGTAGTTGAAC
AACTTATTTGCTCAGTCCAATTGCTCTATATGTGTATCACCCATTATGCATTACCAACTTAGCTG
ACCAAGTCCGACCTACACTTGTCTTTCTATACATGCACCCATCCA
Found at i:253825 original size:13 final size:13
Alignment explanation
Indices: 253809--253836 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
253799 TACTCTCCCC
253809 TCCCTGCGGGGCT
1 TCCCTGCGGGGCT
253822 TCCCTGCGGGGCT
1 TCCCTGCGGGGCT
253835 TC
1 TC
253837 AGGGGTTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.39, G:0.36, T:0.25
Consensus pattern (13 bp):
TCCCTGCGGGGCT
Left flanking sequence: Indices 253309 -- 253808
TTTCCTCCATGCTTACCCAAGAGAGTAGGCTCGGAAGCATGGTTAGTAGAGGGCGGGATGCCAGC
TACGCGAGCCCCCCGAGAGTGAGATGCACACTAGTCAGGAAGGTAAGGCTTCGATAACGCTCCTG
CCCTTGCCCGAGGACTTGTCCGCATCGGGCAAGGAAGAACGTGGGAATTAGTTTATTTGTTTGAT
CAGGGTCCCGGTGAATGATGGAATCGAGTGAACGAATTGACGAGCGAGTGGAGTGTTAGTGTGTG
AGTATGGTGGTTGAGGATGGTAGTTGGTGATACCGAATGGATGGAAAGACTGGGCATCACACAAT
CAATGCTGCCGGTCATCCGGTTATATAGGGAATTTAGCGCATCGTTGACATGGGATGCTCTCATA
ATATATATATATGGATGGCATCGATGTTGCCATTCCTTCCCTTTCCTTATCGTATAGCTTCGTAT
ATAATAATATAATGGCTGGATTCTCCCTCCTATCCTACTCTCCCC
Right flanking sequence: Indices 253837 -- 254336
AGGGGTTCCTTAGTAATCCTTACCCGAGCGATATAAGGAAGGAAAGGAGGCTAGATTTATAAAGG
AAAGGCTACCACAGGGTGCCCTTCCCGGCCCATCCCGGTAGGGGAATGAGGGGTGCGGGGCTTCC
TTCGGTAACTAGAGATCTAATGCTATGAATTTCATTAGCTATATATGTACCATCAAGAATGACTT
TCAGGCTGTAAAGCTTCCTTCATTACCTGTAAAGGCATACAACCTACCTGAGCAGACAAGCTTGC
CTACCTGTCCTTGCCTCTTTCCGGCTGACCTGTAAAGCATGCCTACCTGAGCATAGAAGCCTATA
GGATGACTGGATAGCATGCCTACAGATATCGATAGACTATATTCTGGCACTGATTCACCCTGCTA
TTTTGAACCCGTAAACCCTCGAAAGTCCAGCCCGCCCCATTCTTAAGCTATTTTTTCACTTTAGG
TGGAAGGTCGATCGTCTGGCTCGACCACCACGTGCAACAAAAGTG
Found at i:254676 original size:31 final size:31
Alignment explanation
Indices: 254638--254721 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 31
254628 CCGTACACTT
*
254638 CGTTACATAAGTCATGGCAAGGCCCTGACCA
1 CGTTACATAAGTCATAGCAAGGCCCTGACCA
*
254669 CGTTACATAAATCATAGCAAGGCCCTGACCA
1 CGTTACATAAGTCATAGCAAGGCCCTGACCA
* *
254700 CGTTACATAAGGCATTGCAAGG
1 CGTTACATAAGTCATAGCAAGG
254722 TCTCCATCCC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20
Consensus pattern (31 bp):
CGTTACATAAGTCATAGCAAGGCCCTGACCA
Left flanking sequence: Indices 254138 -- 254637
CCTACCTGAGCATAGAAGCCTATAGGATGACTGGATAGCATGCCTACAGATATCGATAGACTATA
TTCTGGCACTGATTCACCCTGCTATTTTGAACCCGTAAACCCTCGAAAGTCCAGCCCGCCCCATT
CTTAAGCTATTTTTTCACTTTAGGTGGAAGGTCGATCGTCTGGCTCGACCACCACGTGCAACAAA
AGTGAGCGAACCCGGAACACTATGGTATGTACCAAAAGTCGAAACAAGTAGGTATGTGCAAAAAC
CCTCCACACTATTGGATGTGCAAAATATCGGAACAGGCTCTGTTGCCTCTCCTGGATCATTCACT
GGTTCTGGTAGATAAACTAGGCATGTGCATAAAGTCGGAACAGGTAGGGATGCTGCTGCTACTGG
TACTGGTGCTGCTGGTAGAGTCACTTAACGTCCCTCGTACCTCACCCAAAACGGGTGAGTCACTT
AACGTACCTCTCCCGTTGGTCGAGTGTCTCAAGACCCGTACACTT
Right flanking sequence: Indices 254722 -- 255221
TCTCCATCCCAACCCGGTAAGACCTTTCAGGACCTTACCTTCGCTATGCTCAGGTAAGTGACCTG
ACCTACCTTCGCCGCTATCTCAGGTAAGTAAGTGATAACCTTCCCTGAGCTACGAGGGATAACCT
TATATAATAGAATAGTCGTCGCACAGCGGGAAAAACACCGGGCGACACGGCAGGCAGAAGCCAGC
CTAACTCGGGGCCACAAAGGTTATACCGTGCATGCAACTTAAATCAATAAGGCCAGAATGCAACT
ACTGCTACTGCTTGCTCGCTATAGTGAGGTGAGCTGTAGTAAGTAAGAGCCTATTGAGGATAAAT
TGAAGGAGCTAGTAAGAGGTAGGCCCCAATGCCGAATAATAGGTGCTCAGAGAGAAGAGGGGCGC
TATGAGAGACTATCTATCGGTCTTAGCTCCGCAAACCGGTCAAAACTAGGTGCGCCCTAAGGCTC
CCCCGCCCCCAGGTAACGTATTAAAAGCTAGGCGTAATATTCAGA
Found at i:255614 original size:40 final size:38
Alignment explanation
Indices: 255540--255631 Score: 98
Period size: 38 Copynumber: 2.3 Consensus size: 38
255530 GCGTAGCTTT
*
255540 TTGAGGGGAAGAAATATGAGTGATAACCTTCTAGCGAGCGA
1 TTGAGGGGAAG-AATATGAGTGATAACCTCCTAGCGA--GA
* *
255581 TTGA-GGGAAGAATAT-AGTTATAACCTGACCTAGCTAGA
1 TTGAGGGGAAGAATATGAGTGATAACCT--CCTAGCGAGA
255619 TTGAGGGGAAGAA
1 TTGAGGGGAAGAA
255632 AGAAAGGCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
38 16 0.36
39 13 0.29
40 12 0.27
41 4 0.09
ACGTcount: A:0.36, C:0.11, G:0.30, T:0.23
Consensus pattern (38 bp):
TTGAGGGGAAGAATATGAGTGATAACCTCCTAGCGAGA
Left flanking sequence: Indices 255040 -- 255539
GATAAATTGAAGGAGCTAGTAAGAGGTAGGCCCCAATGCCGAATAATAGGTGCTCAGAGAGAAGA
GGGGCGCTATGAGAGACTATCTATCGGTCTTAGCTCCGCAAACCGGTCAAAACTAGGTGCGCCCT
AAGGCTCCCCCGCCCCCAGGTAACGTATTAAAAGCTAGGCGTAATATTCAGACCTGACCTTTCCC
TTACTGGCTGTAAGACCTTCCCTAAAATCTAACGCTGTTAGGCTAGATAGAAAGAAAAGAGGTAA
GTCGGCATGGTGCTTACTGAACCTCCATAATATTGAGCAGGTCGAGTCCCGGTCATATAGAAAAC
CGACACATGGAGAAGGGGCTGGAGGAAGAACCCGGTCCATGGCTTAACATCGGTGGAATGCTACC
TCCAATTCCCTGTATGTTCGATGGAGTGATATATTCCCCACTGATCAGAGTGCGCCGATAACCCC
CCTTACCTAAGCATGAAGGTAAGTGATAACCTTTCGCGTAGCTTT
Right flanking sequence: Indices 255632 -- 256131
AGAAAGGCGGATAACCTTCTTATCGTAGCGGTCGATCCATTGGGTTATTCCATTTGTTCGGAAAA
TAAGCGGGAAACAGGAAAACATCTTTTATTACGATGAAAAGGAACGATCCCAGATAGATGAAAAT
CCAATTTCGGGTCATTCCTTGGTGAACATGATCTGCCATAATCTCTTCGATCCCCACATTAATAT
GCCGGAATAAATAGATATCCGGTAGAAAAGTGGAAAAAACTTTCGATATTATAATCAAAGGGAGT
GGGGAAGCAGCAGTAATTCTTCGGAAAAGCCCGGTTCTCTCTGTCCCCGAGCTTTCATTTCTCAA
TCCACTTGTTCGTCTCTTCATAGACCTCCCCACCAATAGATAGGGACAAATGGGAATGACCGAAC
CACGTCTACGGAATGCCGGTACCATGCAGCTGCTTCAAAGCCAACGTGATGCTCCTTGGTCAAAT
GACCCAGATATTGGCGAATACCACGTATGATTGGGGAAATAGTAC
Found at i:268778 original size:21 final size:21
Alignment explanation
Indices: 268752--268794 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
268742 CAGAGCCTGT
268752 TTTAGATCCTCCAAATACAGA
1 TTTAGATCCTCCAAATACAGA
268773 TTTAGATCCTCCAAATACAGA
1 TTTAGATCCTCCAAATACAGA
268794 T
1 T
268795 CTAGTGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.30
Consensus pattern (21 bp):
TTTAGATCCTCCAAATACAGA
Left flanking sequence: Indices 268252 -- 268751
TTTGATTGAAAAAGAACGGATATTTATTTCCCCTTCGAGCAATTAAGTATGAGACACACAGGCGA
GCCAGAAGAAATGCATACAAAGATCCCCTTATAGGTAGGGCCTAACGCTTTGATAGGGAGTAAGC
CGGTCCATAGCGAGCGGAGTACCTTGCACCGCGCGTGAAGAATGTAGATAGATCCCTTTGATAGG
TTGCAGAGACATAGTAAAGAAGCAGTGAATTAGCCGGTTTACCATGTCTCACCACCCGTTTTATA
ATATTGAATATCGCAATAATATCGCCCAGTTTCCATGCCAGTGCCAGCTTGCCTAACATTTATTC
CATACAGGTCAATTCGTATTGGTCCGCCAAACCAATCCATTGAACCAAACTAATTCATAGCTCCA
TTGACGTAAACCTACATTCCCAAGGCCCAGATGCAGCTGACCGAGCGAGTTTACTTTGCAGCATC
CCTTCAGGGTCCAGATAGAGATCGAGACCCATGACCAGAGCCTGT
Right flanking sequence: Indices 268795 -- 269294
CTAGTGAAATTGGTTCCAAATCCGGTTGGAGGTGAAAATCGAGTAAAAGCACCCTGTGGGTATGT
TCATCTTTGGTTAGGGGGTGATAACATTTATTTGAAATAACTTATGTTCCCCCGTGGTTAAGTTT
ACCGAGAAGCAGTTACGGTGCTAGTCGCAGCTTTCCCTTGTACGGTTCTATATCCAAAAGTGGAG
CCTCCAGTAGCTTATTCAATTGCATATCCATATTCTGTTGATCCAGTCATAAAAGGGGCAGCAGG
AGGAAGTGAAGATGGCATTCCTTCCAGATTGTAAGGACATAGCGTATACCCTCGTACAGTCTTTT
TCAATGTCTATAGCAGTTTGCCCGGTCTCAGTCCCAGGTTACTCAGTAGAGGAAGCGGTAGCTCG
TCTAGCATCCATTCCATTTTGAAACGTAGTTCGGGATCGAGCAGTAAAGGCAGCTAGCGTGTAGG
CAGCAAAGCAATAAACATTCGAGACCCCTACAGCATACCCGCTAG
Found at i:277190 original size:15 final size:16
Alignment explanation
Indices: 277170--277199 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
277160 ATTCTTTTGG
277170 TTTTTCCATC-CAGGT
1 TTTTTCCATCTCAGGT
277185 TTTTTCCATCTCAGG
1 TTTTTCCATCTCAGG
277200 CTGGATGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.27, G:0.13, T:0.47
Consensus pattern (16 bp):
TTTTTCCATCTCAGGT
Left flanking sequence: Indices 276670 -- 277169
TCTATTAAGAATGTTCTACTCACTTTTAAGATAAATAATATACTAGGGAAACTTAAGCCTTATAG
CCTTATAGTTTCTTCTGAGAAAGAGGGGAAAGGTATATTGTTTAATGTCCTTGCAAAGTTCACTG
ATTCTTATCCACCTAGTGATATTAGATGGATGCTCGAGAATATTTATCGAGAACCCTATTCTTAT
CCGCCGAGTGATTGTAGATACAAGCTACAGAATCTGTATCTAGATCCCACCACATTTCCGATTGG
AGTTTGGGGACTTGCAGACTGGGATTATGTTCTTCAAACAATGATGTTGGAAGATCCATATATAC
ATTATGATGTATCCCCAGAAGATTGGCCCTCTATAATAAGAATCAATAAGCTTATAAAGATAATG
AGGGGGGAGCTCTGATAGGGTTCGAATGAAGCTTAATAGTCAAGTGCAAAGAATGCTAATTTACC
TTCGTAATTTCCATTTCTGTTCCTCCTTCAATCCCATTCTTTTGG
Right flanking sequence: Indices 277200 -- 277699
CTGGATGGGTGGAGGCACACAATGGGACGGGGTTGGTGTTGGACCAACGTGGTGTGTGATGCCTG
AGATGGAATGTCCTTAGATGCTAGAAATGAGCGCTACCTGGAAAGTCAATCAATCCCTCTCCTTT
CAGTAAAACAGAATTCCAGCCTTAACCAGGACATGAAGAGGGCAAAGGCAAGGTTTGAGGCCCTT
CTCTTTGGGGAATTTGCATTCATATTATATATGTTATTATGCAAGGCTCCTGCCCCTAAGCCTTT
AAGGAACTAGAAGCCTTACCCTGAAAGGGGACTACTGATAGATACTCAGTCTTACTGTATCAGAG
GATCGATACTCAGTCTTACTGTATCAGAGACTCAGTCCTACTGTATATTTGCTATAGCCTCCACC
TCTAAGTTAAGTTTGGGGACACCCGAGCTCATAGCCTCCACGCAGTTGACACCAAGGGAACACGA
TCGATTGCCCTTATATATAAGTCAAGACGATCGATTGACTGAACG
Found at i:277702 original size:16 final size:16
Alignment explanation
Indices: 277681--277715 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
277671 ATAAGTCAAG
277681 ACGATCGATTGACTGA
1 ACGATCGATTGACTGA
277697 ACGATCGATTGACTGA
1 ACGATCGATTGACTGA
277713 ACG
1 ACG
277716 GTGGACACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (16 bp):
ACGATCGATTGACTGA
Left flanking sequence: Indices 277181 -- 277680
AGGTTTTTTCCATCTCAGGCTGGATGGGTGGAGGCACACAATGGGACGGGGTTGGTGTTGGACCA
ACGTGGTGTGTGATGCCTGAGATGGAATGTCCTTAGATGCTAGAAATGAGCGCTACCTGGAAAGT
CAATCAATCCCTCTCCTTTCAGTAAAACAGAATTCCAGCCTTAACCAGGACATGAAGAGGGCAAA
GGCAAGGTTTGAGGCCCTTCTCTTTGGGGAATTTGCATTCATATTATATATGTTATTATGCAAGG
CTCCTGCCCCTAAGCCTTTAAGGAACTAGAAGCCTTACCCTGAAAGGGGACTACTGATAGATACT
CAGTCTTACTGTATCAGAGGATCGATACTCAGTCTTACTGTATCAGAGACTCAGTCCTACTGTAT
ATTTGCTATAGCCTCCACCTCTAAGTTAAGTTTGGGGACACCCGAGCTCATAGCCTCCACGCAGT
TGACACCAAGGGAACACGATCGATTGCCCTTATATATAAGTCAAG
Right flanking sequence: Indices 277716 -- 278215
GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCAGTGGACACCTGAGCTCCCGGATGT
GTATGGGCCTCCACGCAGTGGACACCTCAGTCAAGTTGTGTCAAGTTGTGTCAAGTTGTGTTTCC
TTTCAGTCAAGTTGTGTCAAGTTGTGTTCCCTTTCTGTCAATCAATCGACCTAAGAAGGAGGGTC
AGTAAGGATCGTGATTTTGAGACTATTTCTTATATCTATTAGGGCCTTAGTTATGTTGAGGCACA
ATAGATCTATTGACCACCTCCTCAACAACTACGGTAAGGGCTTCAGGGGTCCGGCCCTCGCGCTC
AGCATTCTGCTAGCTTGTGTGACCGAACGCTTGTGTGTCTGGCTAGTAAAGGGATGCCCCGGAAC
GGGTAGCCCTTTACGATAGGTCTTCTAGTTATTGATGGTGCTACCTCTGCCTATTGAAAGGTGCT
AGTGCTGGTGCTAGGTAAGTAACTCGCTCTGGATCTATCTAGCTG
Found at i:277773 original size:41 final size:41
Alignment explanation
Indices: 277716--277807 Score: 184
Period size: 41 Copynumber: 2.2 Consensus size: 41
277706 TGACTGAACG
277716 GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
1 GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
277757 GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
1 GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
277798 GTGGACACCT
1 GTGGACACCT
277808 CAGTCAAGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (41 bp):
GTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCA
Left flanking sequence: Indices 277216 -- 277715
ACACAATGGGACGGGGTTGGTGTTGGACCAACGTGGTGTGTGATGCCTGAGATGGAATGTCCTTA
GATGCTAGAAATGAGCGCTACCTGGAAAGTCAATCAATCCCTCTCCTTTCAGTAAAACAGAATTC
CAGCCTTAACCAGGACATGAAGAGGGCAAAGGCAAGGTTTGAGGCCCTTCTCTTTGGGGAATTTG
CATTCATATTATATATGTTATTATGCAAGGCTCCTGCCCCTAAGCCTTTAAGGAACTAGAAGCCT
TACCCTGAAAGGGGACTACTGATAGATACTCAGTCTTACTGTATCAGAGGATCGATACTCAGTCT
TACTGTATCAGAGACTCAGTCCTACTGTATATTTGCTATAGCCTCCACCTCTAAGTTAAGTTTGG
GGACACCCGAGCTCATAGCCTCCACGCAGTTGACACCAAGGGAACACGATCGATTGCCCTTATAT
ATAAGTCAAGACGATCGATTGACTGAACGATCGATTGACTGAACG
Right flanking sequence: Indices 277808 -- 278307
CAGTCAAGTTGTGTCAAGTTGTGTCAAGTTGTGTTTCCTTTCAGTCAAGTTGTGTCAAGTTGTGT
TCCCTTTCTGTCAATCAATCGACCTAAGAAGGAGGGTCAGTAAGGATCGTGATTTTGAGACTATT
TCTTATATCTATTAGGGCCTTAGTTATGTTGAGGCACAATAGATCTATTGACCACCTCCTCAACA
ACTACGGTAAGGGCTTCAGGGGTCCGGCCCTCGCGCTCAGCATTCTGCTAGCTTGTGTGACCGAA
CGCTTGTGTGTCTGGCTAGTAAAGGGATGCCCCGGAACGGGTAGCCCTTTACGATAGGTCTTCTA
GTTATTGATGGTGCTACCTCTGCCTATTGAAAGGTGCTAGTGCTGGTGCTAGGTAAGTAACTCGC
TCTGGATCTATCTAGCTGGTCGAATCTACCGAAACTGATCCTTCAGCACAACGATAGCACCTCTC
ACCTAGCCATCCCTACTCCCTCTACTCCTAGCTGTTGCCTATCTC
Found at i:277825 original size:10 final size:10
Alignment explanation
Indices: 277810--277872 Score: 65
Period size: 10 Copynumber: 6.2 Consensus size: 10
277800 GGACACCTCA
277810 GTCAAGTTGT
1 GTCAAGTTGT
277820 GTCAAGTTGT
1 GTCAAGTTGT
277830 GTCAAGTTGT
1 GTCAAGTTGT
** **
277840 GTTTC-CTTTCA
1 G--TCAAGTTGT
277851 GTCAAGTTGT
1 GTCAAGTTGT
277861 GTCAAGTTGT
1 GTCAAGTTGT
277871 GT
1 GT
277873 TCCCTTTCTG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
9 2 0.05
10 35 0.83
11 3 0.07
12 2 0.05
ACGTcount: A:0.17, C:0.13, G:0.27, T:0.43
Consensus pattern (10 bp):
GTCAAGTTGT
Left flanking sequence: Indices 277310 -- 277809
TCAATCAATCCCTCTCCTTTCAGTAAAACAGAATTCCAGCCTTAACCAGGACATGAAGAGGGCAA
AGGCAAGGTTTGAGGCCCTTCTCTTTGGGGAATTTGCATTCATATTATATATGTTATTATGCAAG
GCTCCTGCCCCTAAGCCTTTAAGGAACTAGAAGCCTTACCCTGAAAGGGGACTACTGATAGATAC
TCAGTCTTACTGTATCAGAGGATCGATACTCAGTCTTACTGTATCAGAGACTCAGTCCTACTGTA
TATTTGCTATAGCCTCCACCTCTAAGTTAAGTTTGGGGACACCCGAGCTCATAGCCTCCACGCAG
TTGACACCAAGGGAACACGATCGATTGCCCTTATATATAAGTCAAGACGATCGATTGACTGAACG
ATCGATTGACTGAACGGTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCAGTGGACAC
CTGAGCTCCCGGATGTGTATGGGCCTCCACGCAGTGGACACCTCA
Right flanking sequence: Indices 277873 -- 278372
TCCCTTTCTGTCAATCAATCGACCTAAGAAGGAGGGTCAGTAAGGATCGTGATTTTGAGACTATT
TCTTATATCTATTAGGGCCTTAGTTATGTTGAGGCACAATAGATCTATTGACCACCTCCTCAACA
ACTACGGTAAGGGCTTCAGGGGTCCGGCCCTCGCGCTCAGCATTCTGCTAGCTTGTGTGACCGAA
CGCTTGTGTGTCTGGCTAGTAAAGGGATGCCCCGGAACGGGTAGCCCTTTACGATAGGTCTTCTA
GTTATTGATGGTGCTACCTCTGCCTATTGAAAGGTGCTAGTGCTGGTGCTAGGTAAGTAACTCGC
TCTGGATCTATCTAGCTGGTCGAATCTACCGAAACTGATCCTTCAGCACAACGATAGCACCTCTC
ACCTAGCCATCCCTACTCCCTCTACTCCTAGCTGTTGCCTATCTCCCCAATTCTACACTTCAGAG
CCTTAAGCCTCTCCTTCCTCTTCTAACAAGGCTCCTTAACTGTTC
Found at i:277858 original size:31 final size:31
Alignment explanation
Indices: 277820--277886 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
277810 GTCAAGTTGT
*
277820 GTCAAGTTGTGTCAAGTTGTGTTTCCTTTCA
1 GTCAAGTTGTGTCAAGTTGTGTTCCCTTTCA
*
277851 GTCAAGTTGTGTCAAGTTGTGTTCCCTTTCT
1 GTCAAGTTGTGTCAAGTTGTGTTCCCTTTCA
277882 GTCAA
1 GTCAA
277887 TCAATCGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.43
Consensus pattern (31 bp):
GTCAAGTTGTGTCAAGTTGTGTTCCCTTTCA
Left flanking sequence: Indices 277320 -- 277819
CCTCTCCTTTCAGTAAAACAGAATTCCAGCCTTAACCAGGACATGAAGAGGGCAAAGGCAAGGTT
TGAGGCCCTTCTCTTTGGGGAATTTGCATTCATATTATATATGTTATTATGCAAGGCTCCTGCCC
CTAAGCCTTTAAGGAACTAGAAGCCTTACCCTGAAAGGGGACTACTGATAGATACTCAGTCTTAC
TGTATCAGAGGATCGATACTCAGTCTTACTGTATCAGAGACTCAGTCCTACTGTATATTTGCTAT
AGCCTCCACCTCTAAGTTAAGTTTGGGGACACCCGAGCTCATAGCCTCCACGCAGTTGACACCAA
GGGAACACGATCGATTGCCCTTATATATAAGTCAAGACGATCGATTGACTGAACGATCGATTGAC
TGAACGGTGGACACCTGAGCTCCCGGATGTGTATGGGCCTCCACGCAGTGGACACCTGAGCTCCC
GGATGTGTATGGGCCTCCACGCAGTGGACACCTCAGTCAAGTTGT
Right flanking sequence: Indices 277887 -- 278386
TCAATCGACCTAAGAAGGAGGGTCAGTAAGGATCGTGATTTTGAGACTATTTCTTATATCTATTA
GGGCCTTAGTTATGTTGAGGCACAATAGATCTATTGACCACCTCCTCAACAACTACGGTAAGGGC
TTCAGGGGTCCGGCCCTCGCGCTCAGCATTCTGCTAGCTTGTGTGACCGAACGCTTGTGTGTCTG
GCTAGTAAAGGGATGCCCCGGAACGGGTAGCCCTTTACGATAGGTCTTCTAGTTATTGATGGTGC
TACCTCTGCCTATTGAAAGGTGCTAGTGCTGGTGCTAGGTAAGTAACTCGCTCTGGATCTATCTA
GCTGGTCGAATCTACCGAAACTGATCCTTCAGCACAACGATAGCACCTCTCACCTAGCCATCCCT
ACTCCCTCTACTCCTAGCTGTTGCCTATCTCCCCAATTCTACACTTCAGAGCCTTAAGCCTCTCC
TTCCTCTTCTAACAAGGCTCCTTAACTGTTCCGTGGTTTTAGCTC
Found at i:280273 original size:2 final size:2
Alignment explanation
Indices: 280266--280294 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
280256 TAGCTGAGGG
280266 AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
280295 TATTTACCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 279766 -- 280265
TATCAGCATCAAGTGTATAAACTAGGATCGACAGCATCGAGTAGCATATCGACTCTTGGATCGAG
TACGGGCATCTAACACGTGGCAGTGACTCTTGGATCGCCTCTTGGATTGAATCCCCTGTAATTAA
GTGATCGACACCAATCATCAAGTGATTTATACCTGGATCGACTAAGGGTAAAAAAGCTAAAAACC
TATTTATACTGGTTATTCCTAGCCTGTGCTCAATCCATATATGTACCTGGGTCCTATTTCTCTGT
AACCGGTGTTTTTATCAGTTCCCGTAGCTTGTTCCTGGGGCGTTAAGCGGGGAGTAGCGGTAAAT
ATAAAAGGTTCAAAGTGCCAACCCAAGCACAAACATATGATAAGGCAGGGGGTAAAATAGATGAA
GTCCAACTTTTCTAGGCGTTATTCATTGATGGGCATAGCGAGAGCTTTTTCTAAGCTTTATTGCC
TTCTTCGCTCTGTATAGAATTGGGAGGGTGAGCCATAGCTGAGGG
Right flanking sequence: Indices 280295 -- 280794
TATTTACCTTTAGCAGTCGAGTATGGGGGCTCAATCAAAGGTATTGATGCGTCTACCTTTACAGG
AGCTCGGTTATTCACAATGTACGGCTCTAAAGGAGTTCCTCAGCCCAAGCAGTTCCAACGGAATA
GATTGGAACCGATCCGCAACACCTAGCTGGGCTTTTTAAATAAATGTTTAGCACTTAATAATATG
TTTTAAAGAGTGAGTAAGGGTTTAAAGAGTGAGTTAGAGGGCCAACCACTCTGTGACCAAACGAA
TGAAGGAAGCCCCCCCTCCCCCTACGCTACAACTAAATCTTGCTAACCTGGAAATAGAAGCTATG
TTCTTTTCTAAAGTCATATAACGTATATAAGATCGATCCTCCCCGCAGTGCTTCCCTTGTGAACT
ATAATGGTTAAAACTGTTTATCCATAATTATGGCAGCAGAATCTCGCAACCATGTTCCCTTATAA
ACCGGGCGTGCTATATTCAAATTAATCCATTTCTATTTCTGATCA
Found at i:283562 original size:26 final size:22
Alignment explanation
Indices: 283508--283550 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
283498 CATGAATACC
283508 TACCTA-TTATTAACTGCATCT
1 TACCTATTTATTAACTGCATCT
283529 TACCTATTTATTAACTGCATCT
1 TACCTATTTATTAACTGCATCT
283551 GGATTACCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (22 bp):
TACCTATTTATTAACTGCATCT
Left flanking sequence: Indices 283008 -- 283507
GTTAAGAGTTAGTTACCGATAGGAGAGGAGAGCTTAGTCCCGTTCGGATAGGAGAGGATTTGAGA
GGAACGGGCCAGATAGGAGAGCATAGGACCAACTTGGGTTGGGATCCGAGCACAGAACAGGGCGG
GGACAGGGGCAGCAAGGAAGCCCAAGCATTAGTGTTATCAAGGGCGAAGCCCAAGCCGGGTTAGT
CCCCCCCTCATTGGTATTGGTATACGGCACAAGGAAGAAAATAAAGGATGGGTTAAAGGCAGCAG
GATAAAAGGCAGGCAGCAGGGTTAATGTAAGTATACGGGGTCCAATACAGGGTCGAAGTAGATAG
ACAGGAAAGGCGAAAGGATGGCTTACAGGCAGCGGTGTGAAAGGAAAGTATACGGAAAAGGAAAG
GAAATGAAGGAACAACTCACCACTACAACAGAGCAACAGCAGAGAGGAGAGGAAAAAAGGAGGAG
TCTAGGAGGAGAGGTTTGTTTGGATTGTTCACGCGCATGAATACC
Right flanking sequence: Indices 283551 -- 284050
GGATTACCTATTACTTATTGAATCCTCCCAGCCAATGGAGTGAGGTTTACTCCCAGCTCATTTAG
GTGTTCAAAGCACAGATTAAAAATTAATCACATCTATTCCTAGAAAATTCACTATAAAATTCACT
TTTGGCAACCGGATCTCTCATTTCCCAGTTGATCCATAGACAGATCTTTTCACGTTCTTCAGACA
TCTTAAAAGCGAAGTTATCATCGAGGACCCATTCTGATTTAAAACCTCCGAACGAGTGAAGGGAA
GTCTGAAGGGTTAGTGTAGGGCAGAGTCATGGGTTAGTTCCCGATAGGAGAGCTTAGTCCGGGTC
AAATTGGAGAGGATGCATGGATGGATTTGAGAGGAACGGTCCCGATAGGAGAGGATAGGAGGGGA
ATAACAATGCCCATAAGACAAGCTAATAAGACAAGCCAGCCAAAAAGCCAAGCTAATCTGGTCTA
ACTTTGATCCAATCAATAAAACTGCATGATCGGTTAGGTTGCACC
Found at i:294523 original size:15 final size:16
Alignment explanation
Indices: 294503--294532 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
294493 TCCTTCAGTC
294503 CAGCCA-CCTAGCCAG
1 CAGCCATCCTAGCCAG
294518 CAGCCATCCTAGCCA
1 CAGCCATCCTAGCCA
294533 AGTTCCGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.27, C:0.47, G:0.17, T:0.10
Consensus pattern (16 bp):
CAGCCATCCTAGCCAG
Left flanking sequence: Indices 294003 -- 294502
GAACCAGTAGAGCGCTCGGTACAGTAGAGCACGGTACCACTGGCCAGATCCCATTGATCTTATTC
TCATTCTTATTGTATCCCATAGATCTTCTCTTACGTCATCGTCATTTAATCTCATCTTATCTCAC
TAGCCGGTTGGTGTCCCCTTGTTCTTCCGGAGGTGAAAGCTAGCCCTTGTTCTATAGGTTGCCCT
TATAGGTCGGTTGGTTAGAAGGAAGCGGTTGGTTGGTTGGTTATATAGATAGCGAGGCATACAAA
TCCATTCTCCAGGAGAACTACATGAATCACGCTGACCAAGTCCCACTCAAGCAGCAAGTCGAGTT
ATTCCAGGCCCGTCGCTATCAGAGGATGAGCCGGATGCTCGGGATGAAGAATCTAATCTTAGGGA
TGAAGAACCTGAACAAGATCGAGATCCACCGGGTGTAGTTTAAGATCGAGATCGAGATAAGGTGG
AACATGGTGGCACCAAAACTCACAAGCCACTACTTTCCTTCAGTC
Right flanking sequence: Indices 294533 -- 295032
AGTTCCGAAGCCAGCCCGAAGCCAGCCAAGCCAGAAAGCTAGCCATCTAAGTAACCCACCACCAG
CCTTCCAAGGGGAGGGAGGTTTGGAGATGCCGAAATGGAACCATTGTTCGAGCATCCATATCTGA
GATTGGCATTGATAGACCAGTCGATCGAGTGCCAAGCAAGCAAGCAGACATATCAGTCCCGAACC
GGTCTTTAGGGCGGGAAGTCGTTATGTTGTGGAGTGCGTCAATGCAATGCTTATCGGTCCCGATC
GGTGATAGCTGTTCACTTTAGTTACCGAACCGACCGAGTCCCCGTAGGGGCATGAGCACAGCAGG
TTCAAGATTGGATCCGAGACGAGGTACGGTAAGTGACTCTTAGACCTAAGAAGGGCGAGGTACGG
AGTCTTGAGACTGAAAGGAATCGGTTCCAAAAGAAGGAGTTGGTCAACGTTCAGTTCAGCAGTTC
CGGTACGTGTGGATGCGGAAGGAAGGAAAGTCGTTCAGGTGTGAT
Found at i:295772 original size:15 final size:15
Alignment explanation
Indices: 295749--295778 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
295739 ATTATCTTTA
295749 TTACAATATTACGAT
1 TTACAATATTACGAT
*
295764 TTACGATATTACGAT
1 TTACAATATTACGAT
295779 CAGAATGAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (15 bp):
TTACAATATTACGAT
Left flanking sequence: Indices 295249 -- 295748
GCGGAGAATTGATAGCCCGAGCGAGGAAAAAAGCCCATGTTGAACCACTCTCCCGGCGGTACCTC
TCCTCGACTTTAGTCGGTCGGTCCTCTATCAATCATTCTCCTTTCAATGCCCTTCTCCGGGTGAC
TTGAGCTCTTAAGTGAGTGCCGGGAAACCACAGTTGTTAATACGTATATAATAGACTCTACTTAT
CCTCTCCTATCGTTAAGGCACATGATGGGTTCAAAGCCTCGACCAAACAAAACCTTAAATTAGAT
ATCATTAATATCAAAGTCAAAAGTATCAATCATCAATCATCAATCAAAAAGTCTCAATCGAATAC
ATTGCGAGCAGCAGCGAGGGTAAGTACGCTTCCTCATCCTGAACCGGGTATTCCACCCACAATCA
GGGTGTAACTACAGATCCAGTCACCGGCTTACCCTTTTCGTCCATCAGGGTCCTAGTATCGTTGC
CTTCACACCTTATCTTGAGCCTTTTTTATTCATTAATTATCTTTA
Right flanking sequence: Indices 295779 -- 296278
CAGAATGAGAAAGCGGTATCACATAGATAATGAATGATATTATTTATACCTTTCATTCCGATCTC
GGAACATTACGACAGCGTGAAACAGCATCCTGTCAATGCTTTCTATAGGGTTATCCAACAGACAC
AAATGATCTTTAGCCTTTATTCAGGTTATTTACGTGTTAGCCTTTGCTCCTTCAGTGAAACGTGC
ACTGGATGCCGAAGCGAGTATGGGTAAGGTAGGATGCAGTAGTGTCTTGGTTGGTCGACCCTTCT
GCTCTATCGGTGACCTGTGGACGAATCTATCAAGGTAGTATACCCATAAACATAAACCTGGTTCC
TTCCTTCCCTTCAACAACGAGATAAGAGCATTGCCTGGTTGAAGTTAAGCAATCATTCTTTGGTT
GGAGCGATAAATACTGAGAAGGATTTCAGAACTGGAGTAGAAGGATTTGCATTGACCATGCCGTA
GACCTACCCATCAACCATACTCATCAACCGGTCACCCACCTCTAT
Found at i:297490 original size:27 final size:27
Alignment explanation
Indices: 297460--297541 Score: 155
Period size: 27 Copynumber: 3.0 Consensus size: 27
297450 GATGCGCCCT
297460 GCTGACTTCACTGAACCGATACAGTAG
1 GCTGACTTCACTGAACCGATACAGTAG
297487 GCTGACTTCACTGAACCGATACAGTAG
1 GCTGACTTCACTGAACCGATACAGTAG
*
297514 GCTGACTTCACTGAACCCATACAGTAG
1 GCTGACTTCACTGAACCGATACAGTAG
297541 G
1 G
297542 GAACTTGCTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (27 bp):
GCTGACTTCACTGAACCGATACAGTAG
Left flanking sequence: Indices 296960 -- 297459
CCCTACTCTTTCATGCATGGAATGGGGGAGTAAGGGGATTGAGAGACAGCGAACTATGGAACCGG
GCTTTGATCTTGTTTCTAGACCCTTTGATCTGTACGCCATGGGAATGTAGTAAGAAATCCAGTCA
GTCCGCTTTCGTAGAGGTGGAGGGTGATCTTCTCCTTTCCTTTCATCACAGGAGCCCGATCTCTT
CTATTTATCTTCGATACTGTAGAAAGCATTAGGGATCGGGATCTAGCATTTTTCCCATGATCGAA
GAGGAAGGACTGGGTTGGGCCGGGGAAGTCCTACCCATCTCTAAGTTCTTTTCAAAGTCGGGGAG
AGGCATCCATCCGCATTCCACCAATACTATACTATTTCGGTACAGTAGGGCGCTGATTCTTTCCG
TCCGATACAGTAGGGATTCCAATACAGTATCGATCATGCAACATCTCTCTTTCCCCTACGGCATT
GAACCTGCACCGATATTATATACGTAATATGAATCGATGCGCCCT
Right flanking sequence: Indices 297542 -- 298041
GAACTTGCTACCGAAGGAAGGATAGCAATCCAAAGAAGGGCATCAACTCATTTCGGTCTATCAAT
ACCAACCCGAATCACAACAAAACAACGGGAATGGGGAGCCCTTTGAGTTTCCGTCTTACGACCAG
ACTGAAGTAGCGTTAGCTGAGCCTTTATCTTCTAGTTTTGTAGGAATTCAAAATGTGTCCGATCA
CACATCTCTTCAGAATTAGAAGACCATTAAAATAAAACCCGAGTCCCAGCCCAGGGTGTGACGAG
CGGTGGGATACCCCAATCATTGAGACCTCTGGCCGTAGGGATCTCTACTGAACTGAAGAATCGGT
GAAAACCGGGTTCTTGCCCTTCTGTCCGGGGAGGGCGGAAAAAGTAGGTAGACAAATTCATTAGT
CACCATGAAATATTTCCCCAGCAAGCAACAGCCCTTCGGTTCGAAGAGGACCATGTCTTAGCGAT
CTCATTCTAATCTAATAAGGGATGAAATCACGTAGAAAGCGGGAA
Found at i:302618 original size:13 final size:13
Alignment explanation
Indices: 302600--302624 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
302590 TCGTAGTTTC
302600 ATTTGTGTAGGTA
1 ATTTGTGTAGGTA
302613 ATTTGTGTAGGT
1 ATTTGTGTAGGT
302625 TATCCCTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (13 bp):
ATTTGTGTAGGTA
Left flanking sequence: Indices 302100 -- 302599
CTACGTACGATCTATAGTGACAGAATTTAGGTAGGCACTATAGATCGTACGTAGTTGCCGTAACA
AATTCCCTGGTTATTCCTTTCCCTAAAGCGAGCGGGATAACCTTAAGGCGTAGCATATTGAAAGC
TAGGCGTAACATAGGTATATTGGGCATAACTAACGTATTAGCAGGCTAGGCGTAGCATATTGAAA
GCTAGGCGTAACATAGGTATATTGAAAGCTAGGAGTAACTAACATATTATACAGGCTAGGCGTAA
CGTATTGAAAGCCAGATCGTGTCATTCAAGTGTGCAACGTCCATCAATGTTCATGTCCGTTGATT
TAGACTTCTTCTCCGTCACCTTCTACGAATAGGATCGATAGGGGCCCCAGCAGCCCGCACGCAGA
ACCGCCTTTCGACTCACCACTCGTATGGCTCGCCCAGAATTTGTGTTATCCCAGAAGTAGGCAAC
TACGATCTATAGTGCATTCTGTCTGTCACTATAGATCGTAGTTTC
Right flanking sequence: Indices 302625 -- 303124
TATCCCTGAGCAGAGCTCAGTTAAGACCTTTCAGGACCTTTTGATTGAGGTTATCCCAACCCAGT
GAAAACCTTTAAAGGCCAGAATCAAATTGGGAGGCCTTACTCTTAAAGTAGGTTCGCCTATAACG
TGGGCCTGGCTATGACTGACTTATGTAACGAAGTATTCGCCTAACGCCTTTTCTTGAGGGGCTAA
AAATAGCAGTGGAATAGAAGGAGATATCTGTCCTAGCGGTAACCTCGCTACCTCACCTAACTACT
TTTATTATGGGAAAAAAATAGCAGTCAGTAAGGTAAATAAGGAGATATATGGGGCTAACGTAACA
CTTACTAGCCCCCTTTCAAGGCCTTACTCTTCGAAGTATTGACCAGATTTTCCTTATGGTTGTTG
CCCTACTGTAACGAAGTCTCTTATTAACGACTTAATTCCTCGGGACTAAAGATAGCAGGCCAGGG
CCGATAATAAGGATAAGGATAAGGCCAAGGATAATAAGAGCACAA
Found at i:305732 original size:2 final size:2
Alignment explanation
Indices: 305720--305771 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
305710 CTATACACGG
* * * * * *
305720 AT AT CT AT AT AT AA AT AT CT CT AT AT CT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
305762 AT AT AT AT AT
1 AT AT AT AT AT
305772 CCTTATGTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 305220 -- 305719
TAGTTCCCCGTAGGCAGCGATCCAGAAACCTATGTTACGCGTAATATTGTGTTACGTTTAATTCA
CCGCTGTTACGCTAGAAATCCAATCCAAGGTTGGTTCCACACGAGCATCAATCCCGTTCTGCGGC
GTGGTGGCAGGAACATCCGCTAGGGGATTGGCTGGGTGGTGTAGGGAAAAATCTGCATGCAAAGG
TAATGCAAATACATAGGCCCCTTCCCCTATTGTTCAGAAGGCGCTTTCCGTTCGTACGATCGGAA
AGGGTTAGGCAGGTAGGTAGTACGGGCCCTCTGACTTCCGGCTATGTGCTGTGCGGCTTTCGCGA
AGCGGATGAAGGCTGATAGTCTTTCTCGCTATGCGCGTTGGTTTGGTATCGCCAAAAATTTGATT
CAACGCAACTCATATTGAGGCTAGCGGCTACGGCTAGGATATCGATCATACCATATCATGCCATA
TACTTAGTTAGATATGGAGATGGGTATCTATATACCTATACACGG
Right flanking sequence: Indices 305772 -- 306271
CCTTATGTATAACCAGATCCACATGTAATGGATAGGGATATCTATGAATAGATATATCCAGAAAG
ATATAGATGCATCCATATCCATCCGGATACATCGTGGATATGGAATGGAATGGATATACATCTAT
ATGCATTTTGATCAGCGGGCGGAATGATACCCCTTAATATTTCCGGTCCCTGCCCCGAAACTAAC
CCGCCCGTTATCTGGCTGGGCACGCACAGCGCCCATTGCCCGCATAGCGTTCAAAAGACGTTAGC
GCAGCGGAGTGGAGCAGCCGCCGCGGCGACACGAAGGTTCGCCGCTTGGCAGGATCTCGCTGGTG
CCACCTATAGGTAGGCGTGTGTGACGTTTGGAGTTGTCGTTCGTGCACCTGTCCCCAATGAAATA
ATGAGTAATCCGTTACCCTGCAGATTATGGCCTGACCACTCGGTCCCGATGGTCGGCGGGGATTA
TAGCAGCAGCTTACGTTCGCGCGTCTCCCCACGTGTGACACGTGT
Found at i:307022 original size:32 final size:33
Alignment explanation
Indices: 306961--307023 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
306951 GGCTCCTCTC
306961 ACTTACCTTCGCTATGCTCAAAGTGATAACCTT
1 ACTTACCTTCGCTATGCTCAAAGTGATAACCTT
*
306994 ACTTACCTTCGCTATGCT-TAAGTGATAACC
1 ACTTACCTTCGCTATGCTCAAAGTGATAACC
307024 CTGAGCTACG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (33 bp):
ACTTACCTTCGCTATGCTCAAAGTGATAACCTT
Left flanking sequence: Indices 306461 -- 306960
CTCATGAGCCAGACAGCCCACCCGGATAACGTGCATGCATTTGGACCGATCGATGGAGAGAGCCA
AAAAAAGCAAAAAAAAGCGCTTGGGCGCTGTACTATGTATAATATATCCATCCTATACAGATAGA
TGGATATATACGGATAGACATCTATATCGATTCGGATATTTGTAGATATCTGTATATCGATATAC
AGATATAGATATCCAGCCAGATGTATCGAGATCTATATATGTCCATCTATGAAGATATTTCTATA
GATACATCACGTTTTGCTGCCATTTAGTTTCCCCAGCCATAAGAAGAAGCAGGCGAACTTGAGGC
GCTTCGCGTCAAACCTTTCTTTGTTCTTCGCGAACGAATTGGAAAAAAAAGCCACGCTATGCTAG
CTATGCTTGCTCCCAAATCTTCGATCGATTCTTACTTCGTAGAGCGAGCCGATAAAGTGAACTAA
CAGAACCCCGCCCCTTTTGGCTATTCAATAAATGGGGCTCCTCTC
Right flanking sequence: Indices 307024 -- 307523
CTGAGCTACGGGAAAGGTCCTGAAAGGTCTTACCTGAGCTAGCTAGAAGGTAAGGTCAGTCATCA
CTTACCGGGTGAAAATGAGAGGTAAGGTATAACCCCCCTTACCTAAGCATGAAGGTAAGTGAGAA
CCTTTGGTCGGCCGGCCTGTAGGCTCTTCGATAGACCCTTTCTTTCTGGCTGGCTCAGTCATTTG
TTAATTACGGCAAATTCTGTCACTACGATAGATAGGTTGCCTACACAAATTCTGGCCCCGCATCA
CCCAGCAGCGCAAGTGTGTCCTGCTGACGCCTCGAATCAAGCTTTTGTTGCGACATGCTATGTTT
TCTCCCCCATTGCTAGTAGGTTGATGGGTCGCACGCCCGGCACACATGTTTTTTTTGCTGGCCTT
GTGTGTTTGTAACTATAGGTGACCTAACGGCCGCCGCCCGACTGGACATACCAATAGTCACAGAA
TTCGTATGGGCTACTGGGGAGTAGGCAATAATCTTCTTAAGATCG
Found at i:308874 original size:30 final size:30
Alignment explanation
Indices: 308839--308897 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
308829 CCCGATCTTA
* *
308839 CGGTCATTCATTATATATGTAATTACGCAC
1 CGGTCATTCATTATATACGTAATGACGCAC
* *
308869 CGGTCATTCTTTATCTACGTAATGACGCA
1 CGGTCATTCATTATATACGTAATGACGCA
308898 ATCGAAGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (30 bp):
CGGTCATTCATTATATACGTAATGACGCAC
Left flanking sequence: Indices 308339 -- 308838
AAGACCATATCTTCCCGAACTCTAGCTCAAGACCAGGTCCTTCCTTATTTCCTTGCCCCCAGCTC
GCTCGTATCATTTTTGTAACTAGAGATACATAACCGGGAAGAGCTTTATGGCCAACATGCATGAC
GAGTTCAGGGAAACTTTATATATGTATATCCCCATGGCCTTTCGCCTTTGGAAGCGTCCTTCCCT
CTCAATGCCCGGGCATCCATCCGATGCATTCTTTCCGATACAGTAGGCATTAAACCTGCTTCACA
CCGCACCAAATTCCCCTCAATCGATCAATCACTCAGGACTGACTGAAACTCAGGGCGGACTGATT
TAAAAGTCCATTTCTTCTTTCTTATGTCATAACACTAGATTCGGTGTGAGTCGAAGGGTGAAACT
CTGTAGCCTTTCTAGTATACTGACGCCGGTGACCTACTCGCCGAAGTACTTTGGGCGGCGTTTTC
ACTAAACAAGACACTTCATTCTCCTTCGACTGACGCCCGATCTTA
Right flanking sequence: Indices 308898 -- 309397
ATCGAAGAATTGATCAAATAATTGATTTATTTGACTTGATTTCTTTTCCCATAACGGGCGAGTCA
CTTACCGTACCTCACCCACTTAGGGTGAGTCACTTAACGTACCTCTCCCTTTGGTTCTTCGCGAC
TACGTTCCTCGCCCTCCTACCTCGGGCGAGTCACTTTCCGTACCTTATGCACTTATCTCCCTGGC
TAATTACCGAAATTAGTAAATACGTTCAAGAAACACTTCGTCTAATATGGGGCTCGGTAAGGACT
TTCCAAGAGCTATCTGTCTCACTATTCGGTGACCTCGCTAACTCAAGCTATAACGTATTGACTCG
TATGATTTCGGTAACTAGATATAGAATCAAGAGAAAACATAACTCCATAGATCACTTGGTAATGA
AGTGTTTCTATAACGTATTTACCTATCCCATTTCGGTAACTAGGGATAGCATAAGGGTCTTTGGA
CACTCAACCAACGGGACCATAACCCGCCCAAAAGACGCCCACTCC
Found at i:310918 original size:12 final size:12
Alignment explanation
Indices: 310901--310925 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
310891 GGGCATATCC
310901 TACAGTTCAAGA
1 TACAGTTCAAGA
310913 TACAGTTCAAGA
1 TACAGTTCAAGA
310925 T
1 T
310926 GAAGAAGCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TACAGTTCAAGA
Left flanking sequence: Indices 310401 -- 310900
GTAACGTATTTAAAGCCTATTCAAAGGGCGTAACAGGCGCCAATTATTAACTCACATGAAAGCTT
GGTCAGGACTTTATTTCCTGGCTGGATCTACCTGTCTTAGTGCCGCCGTAACACGCTAACTCACC
TCCGACCTACTGCCTTGCCTACCTTAGTTCAATCAATAAGGCCAAGGAAAGCCAGCCCAAGAACT
ACATTTTGCCAGATGAGCCCTTTCAAGGCAGGCGGGTCGATTGACTGATGATACAATGCATCTCA
ACCTCCACATGGTGAGCCACCATATAGGGAACTGCCTACCACTACATATGGGGCACAAACCACAA
CATGGGGAAGAGAGCTAAATATTGTCGTTGGATCTTTACTTGCACTACATTTGTTCCTCAATTAC
TATTAGCGTTGAGAATTACCAGTACTATCATAAAGGGGGTGGTCATTACTATCAGCACCATCCAT
AAATACGTTTCGTGCCCAATTCCTTCCAGTAGCGAGGGCATATCC
Right flanking sequence: Indices 310926 -- 311425
GAAGAAGCAGCAAGAGCAGTTCCAGGTGGTACAGATCGTAAGCGAAACCCATATAGAGAAGCAGA
TCGAGATGCAAATCCAAGAACTAGGGTAGTTTACCTGGTTGATACGGGACCAGAAGTTGACCAAA
AAAAAGAACCAGTTGGTTATACAGGTGGTTCAGGAGTTGGTTCACCGGGTTATGTTTTGACTGCT
ACTGAAGAATCTGCAATTGGCTATCTACTTGGTGAGGGAGGATGCCGCTACTAGGAATCATCTAT
TGGAATTGTAACTGCGAATGGAAGTGGATCTGCTACCTGTGATGCTGCTGGAGGATCTGGGACTA
GATACAGGTCCCGGTCTCGATCTATAAAGTACACTAGGCAAGGTGCTACTACCTTTGCTTCAGGG
TCTCAACCTTGAAAGGCATAATCTGTCTATCGCTCATGAAGGGCATAGTCTCGATCTCAAAAAGA
TGGAACTAGAGCTGGATCGGTATCTTAGCGAGGTAGCGGCCCTGG
Found at i:315761 original size:42 final size:38
Alignment explanation
Indices: 315696--315772 Score: 91
Period size: 42 Copynumber: 1.9 Consensus size: 38
315686 GCTACCTCTA
315696 TTATTGTCTCTGCCACCTATGTCTCTGTGTCCTTTGCTTCT
1 TTATTGTCTCTGCCACCTATGTCT-T-TGT-CTTTGCTTCT
* * *
315737 TTATTTTCTGCTGCTACCTGTGTCTTTGTCTTTGCT
1 TTATTGTCT-CTGCCACCTATGTCTTTGTCTTTGCT
315773 GTTCGATCGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 7 0.22
40 3 0.09
41 9 0.28
42 13 0.41
ACGTcount: A:0.06, C:0.26, G:0.16, T:0.52
Consensus pattern (38 bp):
TTATTGTCTCTGCCACCTATGTCTTTGTCTTTGCTTCT
Left flanking sequence: Indices 315196 -- 315695
AAAGTCCTTTCTTCCTTAAGGTCATCCTTTATAATTAGCATAAAAGATAAGGATTGACAGCTCGT
ATTTGCGTATATGAGGTGCAGTAGGCAGGCATTACGAGGTGGCTAGCTAGCATGGACCTTGATTA
CCTAGAAGCAACGGTTGACTCGGTTAAAGCAGTAAAAGAGTAAGCATCCAAACCAGCAGCATCCA
TTCCATTCTAGCCCTCAGTATCCCCTTAATTTATATAGCTTGTTCAAGAGCCAGTTGGACAGCCA
GTTGGACCAACAGCAGGAAAGGAAGCTTCAGCAGCGGATCGAGATCCATATCCTGTTTCCATTGA
TCCAGTTTATGAGCTACCTCGCCCGATATCCATTCCAGTCCCATAGCCCCCGCTGAATTCCTTCC
CGTCCCAGCCTCTCCACCACTACCTCCAATAGCTTTAAGGTCATTTGCCTTCCAGCGGTAAACTG
CTCCTGCCTTTTTATCTACTACTGCATATGGGTCTGCTACCTCTA
Right flanking sequence: Indices 315773 -- 316272
GTTCGATCGATAACTGGAAGGGATCCCGGACGAGGTGCTCCTACCTTTACTTATCCTATTTTCAC
TCGGTCATCAATGGATTATGGATCAACTGGATCAACTTGGTCATTTGCTGGTGTCTCCGCTTCTG
GTGCTGCTGGTTCAGGATCAACCGAGTATCTATGTAGAGGGCACTGAATACCGCTTCTTTGCTTG
GTAAACAACTCGATTTATATCTGCTTCCGTGGGGTAATAAACTGTCTATACTTTCTTTGTTGCTA
CTGCATCTGTACCTGGAATAGTCGGATCTATTGCTGGGTCTCCATATTTATTTGCCGCGGGCAAT
GGTTAAAGTGGCTATGGTCTTCCTGGATCTCGATCTGCTACAGGTGAGACTTAATCTTTCACGGG
GTGGAACTGAAACTCGGTCTACTAGCATGGTGAACCACAATTGGCTTTGGAACACATGGTCCCGG
CTACGCTCCTGGCTTTGCAACGAGCTATCGATTGGTATGGATGCT
Found at i:321853 original size:17 final size:17
Alignment explanation
Indices: 321813--321845 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
321803 TAACCCACAC
321813 CCATCCAAGCAATCTCA
1 CCATCCAAGCAATCTCA
321830 CCATCCAAGCAATCTC
1 CCATCCAAGCAATCTC
321846 TCCCTCCACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.42, G:0.06, T:0.18
Consensus pattern (17 bp):
CCATCCAAGCAATCTCA
Left flanking sequence: Indices 321313 -- 321812
TTACCGGGGGTTGCAGCCGAGAATACATCGTCTACACCCACACATTAGCCGACAAGCTGGGTTAG
CCCAACACCAGGAGCTGATAAACTTTGAAGCTGCCAAGCTTGGTTGTTAGCCTAACTCCTGGGGC
TGCTGCTAAAGGTTAGCCCAACACCTTGAGCTCCTAAACATGGATGCGAGCATATATAATGTGGC
CTCCGGAACATGGGCTTGACCCAAACACTGTTGCCTGCTGAACATGGGTAGTTGCTCGCTCAACC
AATAGCTACTGGAAGAACCATTGCTCGCTTAACACTGGGTTGCGAAGCTGAACCAATCAATAGTC
ACGCGAAGAGGAAGAACCATAGCTCACTGAACCATAGGTACGTTCCTTCCCCTCCCTTCCCGAAC
TACACTATACGGACAGGAGTGTGAGCAACGGGTACGAGACGAGAGAAGAGGTAGGTGGGATTCGA
CTACTCTACTTCGGGTAACATACTTTCACTGGGACTAACCCACAC
Right flanking sequence: Indices 321846 -- 322345
TCCCTCCACCCCCACCAATAGCTATTCTCGCGAGCTACCTCACCTAAGACTTTACGGGGAATAAC
CTTCGCAAAAGCCCCATAAAGGCACCATAAAAGCCCCATAAAATACCAGGAAAAGAGCAAATGTG
ATGTGAAAAAGCGTGTATAAGTATCGTAACATAGGTATATTGAAAGCTAGGAGTAACTAACATAT
TAGACAGGCTTTTGGAGATACTTCGTTGAAATAATTCGTTGGAATAATTCGTTTCAGTCTTTTTT
TGTAAAAGACCAAATTATGGAGTTATTTTATCTTTATGCTATCTCTAGTTACCGAAAGCATACGA
GTCAATACGTCTTAGAGAACCTTCGTAGAATCAGAGTCTATTAAAAGACCATAAGGTGTTCCATC
CTCTCCCACAATAAATAAACTTCGTTCCTAAGTTACTTATTTGGTGAGGGGCCTGCGTCGGGAGA
GCGACTCCGTACCTCACCCACTTAGGGTGAGTCACTAATCGTACC
Found at i:321964 original size:22 final size:22
Alignment explanation
Indices: 321917--321965 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
321907 TAACCTTCGC
* *
321917 AAAAGCCCCATAAAGGCACCAT
1 AAAAGCCCCATAAAGACACCAG
*
321939 AAAAGCCCCATAAA-ATACCAGG
1 AAAAGCCCCATAAAGACACCA-G
321961 AAAAG
1 AAAAG
321966 AGCAAATGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.51, C:0.27, G:0.14, T:0.08
Consensus pattern (22 bp):
AAAAGCCCCATAAAGACACCAG
Left flanking sequence: Indices 321417 -- 321916
TTGGTTGTTAGCCTAACTCCTGGGGCTGCTGCTAAAGGTTAGCCCAACACCTTGAGCTCCTAAAC
ATGGATGCGAGCATATATAATGTGGCCTCCGGAACATGGGCTTGACCCAAACACTGTTGCCTGCT
GAACATGGGTAGTTGCTCGCTCAACCAATAGCTACTGGAAGAACCATTGCTCGCTTAACACTGGG
TTGCGAAGCTGAACCAATCAATAGTCACGCGAAGAGGAAGAACCATAGCTCACTGAACCATAGGT
ACGTTCCTTCCCCTCCCTTCCCGAACTACACTATACGGACAGGAGTGTGAGCAACGGGTACGAGA
CGAGAGAAGAGGTAGGTGGGATTCGACTACTCTACTTCGGGTAACATACTTTCACTGGGACTAAC
CCACACCCATCCAAGCAATCTCACCATCCAAGCAATCTCTCCCTCCACCCCCACCAATAGCTATT
CTCGCGAGCTACCTCACCTAAGACTTTACGGGGAATAACCTTCGC
Right flanking sequence: Indices 321966 -- 322465
AGCAAATGTGATGTGAAAAAGCGTGTATAAGTATCGTAACATAGGTATATTGAAAGCTAGGAGTA
ACTAACATATTAGACAGGCTTTTGGAGATACTTCGTTGAAATAATTCGTTGGAATAATTCGTTTC
AGTCTTTTTTTGTAAAAGACCAAATTATGGAGTTATTTTATCTTTATGCTATCTCTAGTTACCGA
AAGCATACGAGTCAATACGTCTTAGAGAACCTTCGTAGAATCAGAGTCTATTAAAAGACCATAAG
GTGTTCCATCCTCTCCCACAATAAATAAACTTCGTTCCTAAGTTACTTATTTGGTGAGGGGCCTG
CGTCGGGAGAGCGACTCCGTACCTCACCCACTTAGGGTGAGTCACTAATCGTACCTCGCCCTTCT
TAGGTCGGGCGAGTCACTTAACGTACCTCACCCATAACGGGTGAGTCACTTAACGTACCTCACCC
ATAACGGGTGAGTCACTTAACGTACCTCTCCCTCCCGATGGTCGG
Found at i:322080 original size:13 final size:13
Alignment explanation
Indices: 322062--322093 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
322052 TTGGAGATAC
322062 TTCGTTGAAATAA
1 TTCGTTGAAATAA
*
322075 TTCGTTGGAATAA
1 TTCGTTGAAATAA
322088 TTCGTT
1 TTCGTT
322094 TCAGTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (13 bp):
TTCGTTGAAATAA
Left flanking sequence: Indices 321562 -- 322061
CTCGCTCAACCAATAGCTACTGGAAGAACCATTGCTCGCTTAACACTGGGTTGCGAAGCTGAACC
AATCAATAGTCACGCGAAGAGGAAGAACCATAGCTCACTGAACCATAGGTACGTTCCTTCCCCTC
CCTTCCCGAACTACACTATACGGACAGGAGTGTGAGCAACGGGTACGAGACGAGAGAAGAGGTAG
GTGGGATTCGACTACTCTACTTCGGGTAACATACTTTCACTGGGACTAACCCACACCCATCCAAG
CAATCTCACCATCCAAGCAATCTCTCCCTCCACCCCCACCAATAGCTATTCTCGCGAGCTACCTC
ACCTAAGACTTTACGGGGAATAACCTTCGCAAAAGCCCCATAAAGGCACCATAAAAGCCCCATAA
AATACCAGGAAAAGAGCAAATGTGATGTGAAAAAGCGTGTATAAGTATCGTAACATAGGTATATT
GAAAGCTAGGAGTAACTAACATATTAGACAGGCTTTTGGAGATAC
Right flanking sequence: Indices 322094 -- 322593
TCAGTCTTTTTTTGTAAAAGACCAAATTATGGAGTTATTTTATCTTTATGCTATCTCTAGTTACC
GAAAGCATACGAGTCAATACGTCTTAGAGAACCTTCGTAGAATCAGAGTCTATTAAAAGACCATA
AGGTGTTCCATCCTCTCCCACAATAAATAAACTTCGTTCCTAAGTTACTTATTTGGTGAGGGGCC
TGCGTCGGGAGAGCGACTCCGTACCTCACCCACTTAGGGTGAGTCACTAATCGTACCTCGCCCTT
CTTAGGTCGGGCGAGTCACTTAACGTACCTCACCCATAACGGGTGAGTCACTTAACGTACCTCAC
CCATAACGGGTGAGTCACTTAACGTACCTCTCCCTCCCGATGGTCGGTCGAGCGTTAAAACCGTT
TCTCACCCTCAATCGAGCAACTCAAAGTTTAGGTTACTTATTTGGTGAGGGGCGTTGGTCGAGTG
TGTTTTTAAATACCCTGGTGTACACTTATAGCCTTCCTCCCTCAA
Found at i:322407 original size:32 final size:32
Alignment explanation
Indices: 322361--322448 Score: 167
Period size: 32 Copynumber: 2.8 Consensus size: 32
322351 CTTCTTAGGT
*
322361 CGGGCGAGTCACTTAACGTACCTCACCCATAA
1 CGGGTGAGTCACTTAACGTACCTCACCCATAA
322393 CGGGTGAGTCACTTAACGTACCTCACCCATAA
1 CGGGTGAGTCACTTAACGTACCTCACCCATAA
322425 CGGGTGAGTCACTTAACGTACCTC
1 CGGGTGAGTCACTTAACGTACCTC
322449 TCCCTCCCGA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (32 bp):
CGGGTGAGTCACTTAACGTACCTCACCCATAA
Left flanking sequence: Indices 321861 -- 322360
CAATAGCTATTCTCGCGAGCTACCTCACCTAAGACTTTACGGGGAATAACCTTCGCAAAAGCCCC
ATAAAGGCACCATAAAAGCCCCATAAAATACCAGGAAAAGAGCAAATGTGATGTGAAAAAGCGTG
TATAAGTATCGTAACATAGGTATATTGAAAGCTAGGAGTAACTAACATATTAGACAGGCTTTTGG
AGATACTTCGTTGAAATAATTCGTTGGAATAATTCGTTTCAGTCTTTTTTTGTAAAAGACCAAAT
TATGGAGTTATTTTATCTTTATGCTATCTCTAGTTACCGAAAGCATACGAGTCAATACGTCTTAG
AGAACCTTCGTAGAATCAGAGTCTATTAAAAGACCATAAGGTGTTCCATCCTCTCCCACAATAAA
TAAACTTCGTTCCTAAGTTACTTATTTGGTGAGGGGCCTGCGTCGGGAGAGCGACTCCGTACCTC
ACCCACTTAGGGTGAGTCACTAATCGTACCTCGCCCTTCTTAGGT
Right flanking sequence: Indices 322449 -- 322948
TCCCTCCCGATGGTCGGTCGAGCGTTAAAACCGTTTCTCACCCTCAATCGAGCAACTCAAAGTTT
AGGTTACTTATTTGGTGAGGGGCGTTGGTCGAGTGTGTTTTTAAATACCCTGGTGTACACTTATA
GCCTTCCTCCCTCAAATTTTATACAGTGAAGGTCTTCATTCGTACATTAAGAGGCCCCCTTTACT
AATTACCCCAAAAGACTTTCCTGGGGCATTTAAGGACCTGTCTGGGTTTCCGAAAAATAGCAGGG
TTTATAAGTATCATATCTGTAGGGTTGGCTTCGCGTTAGAAGGGTTGATAAGGACCTTACTGGCT
GAGTTGACCAGGACCTTACTGGCTGGGTTGACCGGCGAGGACCTTACCTGAGCTCAAGACCTTTC
CCTTCTAAAGAAGGGCAGGATACTATTTTATTCTCCAACTACTTCCCCTCAAACTGAAATATATT
TCCGAACCTTATTTTCACCCGGCCCGGTAAGTACCAACCCTTCTC
Found at i:322820 original size:28 final size:24
Alignment explanation
Indices: 322759--322806 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
322749 AGGGTTGATA
322759 AGGACCTTACTGGCTGAGTTGACC
1 AGGACCTTACTGGCTGAGTTGACC
*
322783 AGGACCTTACTGGCTGGGTTGACC
1 AGGACCTTACTGGCTGAGTTGACC
322807 GGCGAGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (24 bp):
AGGACCTTACTGGCTGAGTTGACC
Left flanking sequence: Indices 322259 -- 322758
GTTCCTAAGTTACTTATTTGGTGAGGGGCCTGCGTCGGGAGAGCGACTCCGTACCTCACCCACTT
AGGGTGAGTCACTAATCGTACCTCGCCCTTCTTAGGTCGGGCGAGTCACTTAACGTACCTCACCC
ATAACGGGTGAGTCACTTAACGTACCTCACCCATAACGGGTGAGTCACTTAACGTACCTCTCCCT
CCCGATGGTCGGTCGAGCGTTAAAACCGTTTCTCACCCTCAATCGAGCAACTCAAAGTTTAGGTT
ACTTATTTGGTGAGGGGCGTTGGTCGAGTGTGTTTTTAAATACCCTGGTGTACACTTATAGCCTT
CCTCCCTCAAATTTTATACAGTGAAGGTCTTCATTCGTACATTAAGAGGCCCCCTTTACTAATTA
CCCCAAAAGACTTTCCTGGGGCATTTAAGGACCTGTCTGGGTTTCCGAAAAATAGCAGGGTTTAT
AAGTATCATATCTGTAGGGTTGGCTTCGCGTTAGAAGGGTTGATA
Right flanking sequence: Indices 322807 -- 323306
GGCGAGGACCTTACCTGAGCTCAAGACCTTTCCCTTCTAAAGAAGGGCAGGATACTATTTTATTC
TCCAACTACTTCCCCTCAAACTGAAATATATTTCCGAACCTTATTTTCACCCGGCCCGGTAAGTA
CCAACCCTTCTCAAGACCAGGACCTTACCTTCGGTAAGACCTTTCAGGACCTTTTGTTTTTTTCT
AATCATTAATGAGCGGTCCGGCAGGGGGGGAACCCCCCTTAATCATAATCGAGTAGTGCCCTTCC
CTCAATGATTAATAGGGATACCAGCGAGGGGCACTATTCCGGCTGGGCACTACTAATGATAATGG
ATGTTGGGGCTTTCTATTAAGGTGATCCAAGTTGGGGGACCCTCTTATCGAACCAATCTATTCTT
TTTGCTTGCTCAGATTTAGATATCCCGAGCCCCCTTCGGCTGGCCAGCCAATGCAACAGTCTGTC
TTCGTAATCATAACGGGTCGATCCTCCATTTCGTTCGTTTCAGCA
Found at i:324729 original size:32 final size:32
Alignment explanation
Indices: 324683--324748 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
324673 CTTCTTAGGT
*
324683 CGGGCGAGTCACTTAACGTACCTCCCCCAGAA
1 CGGGCGAGTCACTTAACGTACCTCCCCCACAA
* *
324715 CGGGTGAGTCACTTAACGTACCTCGCCCACAA
1 CGGGCGAGTCACTTAACGTACCTCCCCCACAA
324747 CG
1 CG
324749 AGACACTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.24, C:0.36, G:0.23, T:0.17
Consensus pattern (32 bp):
CGGGCGAGTCACTTAACGTACCTCCCCCACAA
Left flanking sequence: Indices 324183 -- 324682
AAGTGAGAGGAGAGGCGCACAGACCAATGAATCGTATCAGTCGTATTCTTGAATTTGGAATGGAA
AGAGGAATAATGCTCCCCAGCACGGGACACAGAATAGGACCACTTAGATCGGAATAGCATTCACG
AAAAGGTAGTAACATACGAATTGAACATTGAAGGGATTAGTTGGCAACAGATAAAGATGAGGCGC
CTAGTTTCAATAAGAGTCTATCAGTGCAGTGCAAGTCAGCTGAACACCGTTGATAAGGGGAAGAA
GAGGGAGGGCTTTTCCGGGAACTCATACCCACCCTGTCCCTTATAAATCTGTCCTCCCTCCTGCT
CCATCTCCCCTGCCCTACATAGATTTCCCACTTTCGTGATTGGGTTTGTGCTCTAAGCAAGGTAA
AGCCATGAATTCAGCCAGCCAATGTGGTGTGGTCAATAAAATAAAAGGCGATAAGGTCCCTCAAG
GGCCTCTCCCTTTGGTCTCGCGTTCGTTCCTCCCCCTTCTTAGGT
Right flanking sequence: Indices 324749 -- 325248
AGACACTTAACGTACCTCACCCTTTATTTCTTCCCCTCAAAGAGCGCTTATAAAGTGACTCTTTC
TTCAAAAGTCCATTTCTTCCAGTCATTCTTTATATATGTAATAACACGCTTTTCGGTGTGAGTCG
AAGGGTGAGGAGCGAAAAGCGCTCACCTGAAGGATGAGGGTGAGGAGCGAAAAGCGCTCACCTGA
AGGATGAGGGTGAGGAGCGTAGTAGCCTAGTAGTCTACTTGCACCGGAGACCGACTTCTACGAAG
TCCTTTGGGCGGCGCGTTTGAACTAAACAAGACACTTCATTCTCCTTCCCCTATGAGGGAGGGAA
AGAGCTAAACGCACCTTCCCCGATGCGAGAAAGGGCTTTCGCACCTCTATTTTATAGAGCGGCTC
GTACCTCGCTCCTTCGACGCGGACGCCGAGTCGTGCTGCTGGTCATTATATATGTAAATACACAT
GCGCTTTTTGTTTTTTATTTGATGCGACATGATACATCTATATCC
Found at i:324764 original size:28 final size:28
Alignment explanation
Indices: 324687--324766 Score: 97
Period size: 32 Copynumber: 2.7 Consensus size: 28
324677 TTAGGTCGGG
*
324687 CGAGTCACTTAACGTACCTCCCCCAGAA
1 CGAGTCACTTAACGTACCTCCCCCACAA
*
324715 CGGGTGAGTCACTTAACGTACCTCGCCCACAA
1 C----GAGTCACTTAACGTACCTCCCCCACAA
*
324747 CGAGACACTTAACGTACCTC
1 CGAGTCACTTAACGTACCTC
324767 ACCCTTTATT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
28 19 0.42
32 26 0.58
ACGTcount: A:0.28, C:0.36, G:0.17, T:0.19
Consensus pattern (28 bp):
CGAGTCACTTAACGTACCTCCCCCACAA
Left flanking sequence: Indices 324187 -- 324686
GAGAGGAGAGGCGCACAGACCAATGAATCGTATCAGTCGTATTCTTGAATTTGGAATGGAAAGAG
GAATAATGCTCCCCAGCACGGGACACAGAATAGGACCACTTAGATCGGAATAGCATTCACGAAAA
GGTAGTAACATACGAATTGAACATTGAAGGGATTAGTTGGCAACAGATAAAGATGAGGCGCCTAG
TTTCAATAAGAGTCTATCAGTGCAGTGCAAGTCAGCTGAACACCGTTGATAAGGGGAAGAAGAGG
GAGGGCTTTTCCGGGAACTCATACCCACCCTGTCCCTTATAAATCTGTCCTCCCTCCTGCTCCAT
CTCCCCTGCCCTACATAGATTTCCCACTTTCGTGATTGGGTTTGTGCTCTAAGCAAGGTAAAGCC
ATGAATTCAGCCAGCCAATGTGGTGTGGTCAATAAAATAAAAGGCGATAAGGTCCCTCAAGGGCC
TCTCCCTTTGGTCTCGCGTTCGTTCCTCCCCCTTCTTAGGTCGGG
Right flanking sequence: Indices 324767 -- 325266
ACCCTTTATTTCTTCCCCTCAAAGAGCGCTTATAAAGTGACTCTTTCTTCAAAAGTCCATTTCTT
CCAGTCATTCTTTATATATGTAATAACACGCTTTTCGGTGTGAGTCGAAGGGTGAGGAGCGAAAA
GCGCTCACCTGAAGGATGAGGGTGAGGAGCGAAAAGCGCTCACCTGAAGGATGAGGGTGAGGAGC
GTAGTAGCCTAGTAGTCTACTTGCACCGGAGACCGACTTCTACGAAGTCCTTTGGGCGGCGCGTT
TGAACTAAACAAGACACTTCATTCTCCTTCCCCTATGAGGGAGGGAAAGAGCTAAACGCACCTTC
CCCGATGCGAGAAAGGGCTTTCGCACCTCTATTTTATAGAGCGGCTCGTACCTCGCTCCTTCGAC
GCGGACGCCGAGTCGTGCTGCTGGTCATTATATATGTAAATACACATGCGCTTTTTGTTTTTTAT
TTGATGCGACATGATACATCTATATCCAACCAGAATTGATTCTAT
Found at i:324926 original size:35 final size:35
Alignment explanation
Indices: 324880--324962 Score: 166
Period size: 35 Copynumber: 2.4 Consensus size: 35
324870 TGTGAGTCGA
324880 AGGGTGAGGAGCGAAAAGCGCTCACCTGAAGGATG
1 AGGGTGAGGAGCGAAAAGCGCTCACCTGAAGGATG
324915 AGGGTGAGGAGCGAAAAGCGCTCACCTGAAGGATG
1 AGGGTGAGGAGCGAAAAGCGCTCACCTGAAGGATG
324950 AGGGTGAGGAGCG
1 AGGGTGAGGAGCG
324963 TAGTAGCCTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.30, C:0.16, G:0.43, T:0.11
Consensus pattern (35 bp):
AGGGTGAGGAGCGAAAAGCGCTCACCTGAAGGATG
Left flanking sequence: Indices 324380 -- 324879
AGTTTCAATAAGAGTCTATCAGTGCAGTGCAAGTCAGCTGAACACCGTTGATAAGGGGAAGAAGA
GGGAGGGCTTTTCCGGGAACTCATACCCACCCTGTCCCTTATAAATCTGTCCTCCCTCCTGCTCC
ATCTCCCCTGCCCTACATAGATTTCCCACTTTCGTGATTGGGTTTGTGCTCTAAGCAAGGTAAAG
CCATGAATTCAGCCAGCCAATGTGGTGTGGTCAATAAAATAAAAGGCGATAAGGTCCCTCAAGGG
CCTCTCCCTTTGGTCTCGCGTTCGTTCCTCCCCCTTCTTAGGTCGGGCGAGTCACTTAACGTACC
TCCCCCAGAACGGGTGAGTCACTTAACGTACCTCGCCCACAACGAGACACTTAACGTACCTCACC
CTTTATTTCTTCCCCTCAAAGAGCGCTTATAAAGTGACTCTTTCTTCAAAAGTCCATTTCTTCCA
GTCATTCTTTATATATGTAATAACACGCTTTTCGGTGTGAGTCGA
Right flanking sequence: Indices 324963 -- 325462
TAGTAGCCTAGTAGTCTACTTGCACCGGAGACCGACTTCTACGAAGTCCTTTGGGCGGCGCGTTT
GAACTAAACAAGACACTTCATTCTCCTTCCCCTATGAGGGAGGGAAAGAGCTAAACGCACCTTCC
CCGATGCGAGAAAGGGCTTTCGCACCTCTATTTTATAGAGCGGCTCGTACCTCGCTCCTTCGACG
CGGACGCCGAGTCGTGCTGCTGGTCATTATATATGTAAATACACATGCGCTTTTTGTTTTTTATT
TGATGCGACATGATACATCTATATCCAACCAGAATTGATTCTATTTCGAGATACAGATATGATCT
CAGTTTCTCTAACTGTGTGAAGAGTTGGCTTTTACGGTCAAGTCAATCCTTCGACAATGCTGCTA
TTATATATGTAATTACGCTTTAGGCTCTCATAATCGATCGTACCCTAATAGAATAATATCGTTTA
CAAAGATATATCTCATTATATATGTAATTATTGCATGTCGCTTAT
Found at i:325633 original size:11 final size:11
Alignment explanation
Indices: 325617--325650 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
325607 GCATGGGACG
325617 TTCCCTTTCGC
1 TTCCCTTTCGC
325628 TTCCCTTTCGC
1 TTCCCTTTCGC
**
325639 TTTGCTTTCGC
1 TTCCCTTTCGC
325650 T
1 T
325651 AGCATGGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.00, C:0.38, G:0.12, T:0.50
Consensus pattern (11 bp):
TTCCCTTTCGC
Left flanking sequence: Indices 325117 -- 325616
CCTCTATTTTATAGAGCGGCTCGTACCTCGCTCCTTCGACGCGGACGCCGAGTCGTGCTGCTGGT
CATTATATATGTAAATACACATGCGCTTTTTGTTTTTTATTTGATGCGACATGATACATCTATAT
CCAACCAGAATTGATTCTATTTCGAGATACAGATATGATCTCAGTTTCTCTAACTGTGTGAAGAG
TTGGCTTTTACGGTCAAGTCAATCCTTCGACAATGCTGCTATTATATATGTAATTACGCTTTAGG
CTCTCATAATCGATCGTACCCTAATAGAATAATATCGTTTACAAAGATATATCTCATTATATATG
TAATTATTGCATGTCGCTTATTTCTTTTGTGTCAAGGGGCTGCTGTCACAACGTCATAGGTTGTT
TGTTCTTCAAGCAGTGTGTTTAAACAGATTTGTTCTTCTCGCTTTCTTCATGGCTTCCTTGGCTT
GCCTTGGTTCTGTCCTGATCGCTTTCCTTTCGCTAGCATGGGACG
Right flanking sequence: Indices 325651 -- 326150
AGCATGGCACCTTCCCTTTAACTGTCTTCCTTGTCACTCCAAGTATCTAGCATCCCACCCTTTCA
GAAAGATGGTTAAAACTCTCAAATAATGCTTCTAACTCTAAGCACGTTAGGATCAAACGCTGTCC
CTTTCACGATCTCCTAACTCTAAGCACCAGAGCATCCAACCGTTGTACTCTCTGCTCTTATCTGC
TCTTCTCTTCTCTGCTGACTCTAACCCTTGGCTGCCGGTGTTCTATGGCTTAGCTTGTGTAACCC
CGAAGCTTGGCTTGTTTCTCGCTTTGCTTAGCTTGGTGAACGCAACCTACGTCTTAGCTTGTCTG
GCTTTGTTTGTGAAACCAAGAGTATCATCATGTTTTATTAAGTGATCCTCCAGTTCCAGCCATGT
TCACAGGTGCATACTCCTTTCAATGACATGTCCTTAGACAAGCGCTGTCCATAGGTTCAAGTATA
GGTCGGTCAGGATAAAGCCGTTCCGCTTGACTATTCATTCAGCAA
Found at i:335434 original size:40 final size:40
Alignment explanation
Indices: 335389--335469 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
335379 AGGTCAGGTA
* * * *
335389 GTCAGGG-AAGGGAAGGTAATGAAAGGTCAGGTCACGTATG
1 GTCAGGGAAAGGAAAGGCAAGGAAAGG-CAAGTCACGTATG
*
335429 GTCAGGGAAAGGAAAGGCAAGGAAAGGCAAGTCAGGTATG
1 GTCAGGGAAAGGAAAGGCAAGGAAAGGCAAGTCACGTATG
335469 G
1 G
335470 GAAGATCAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 19 0.54
41 16 0.46
ACGTcount: A:0.36, C:0.10, G:0.41, T:0.14
Consensus pattern (40 bp):
GTCAGGGAAAGGAAAGGCAAGGAAAGGCAAGTCACGTATG
Left flanking sequence: Indices 334889 -- 335388
AACCAGCAGTCCGGCATTAGGATCGTTCCCATAAGCTCCAGTTGAACCGGCATGCATCATTTGAA
CAGCATCGTAGCAAAGAGCAGCACGTAGATAAGCAGTACCAAGAGCATCCCCAGGAGAAGTTTAA
GCATAACAACGTCCCAACACCAGCATTAGGATCAGCCAATGGAATCTGGAGCCGCAGCAGCAGTT
CCAGTTCCCGGAGCAGTTCCAGCAGCCCTCTGTCGCAGTTTAAGGAGCATAAGAACTATAGTTTC
TAGATTTTGAAATAGAATCCCTGGGAACTAAGTAATACCCTTACTCTACCAGCTGAGTAAGCCCT
TTCTTTCGCCCAAGGTCAAAGGTCAGGTCAGGAGCTTCCAACCGGCCGGATAGTGAAAGACCCAG
ATCTGTTTCTTTGGATGGATCCTTGCCTGGATTAGGAAGGGTTATCGCTTCGCTTGCCTGGACCT
ATTTGGTGGGGCTGATCGATATCGCTTGTTGTGGAAGGTCAGGTA
Right flanking sequence: Indices 335470 -- 335969
GAAGATCAAGTCACGTCAGGTCTGGGAAGCTCTAGTCGGTGCATGAACGAAGCTCTGGTCGGTCC
AGCTAGTATTAGGTAAAGAGTTCATAGAGAATAAAATCCAGTTTCAGTGGCCAATGATAAAATAT
ACCTTTTGAGGACCTTCCATTGCCCTGAGCATGATGCGCTTTAAAGACATTTTTATGTATGAGGG
TTATTACTATCTCCCTTTGGTGGTTGCATCGGCATCGTAGCTCCCCGGGGCCCTTAAGCCTAAAA
GAACTTATCCTTCCTCTTCAATGACCGGCAGTGATGGCTAAGTATAGAACGCAAGCAAATGCCCT
TTGAAGCGCTGTGAAGGCTAAAGGCTCCTTCCTTCCTGGTTACAGGCTCTTGAACTTCCTTCTGT
TGTCCTTAGGTCCCTAGTTTACAGGCTCTTGAAAATGGAGAAAGCAAGGTCGAGGTGGGAGAGAG
AGAAGAGATATAAGCGGGGGAAGGGTGTCTAAGAGAGAGAGTTTA
Found at i:340574 original size:19 final size:19
Alignment explanation
Indices: 340550--340588 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
340540 TTCACACCGG
340550 TTCCCTACCTGTTAACATA
1 TTCCCTACCTGTTAACATA
*
340569 TTCCCTCCCTGTTAACATA
1 TTCCCTACCTGTTAACATA
340588 T
1 T
340589 AGATAGGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.33, G:0.05, T:0.38
Consensus pattern (19 bp):
TTCCCTACCTGTTAACATA
Left flanking sequence: Indices 340050 -- 340549
CGACTCGACCGGCAGCATTCTCTCCTCTCTGGCTGGTGGGGTAGGTAAAGAGAGAGAGGCGGCAT
GCGCATGCATTCTATCTGGTGTAGGGTGGGAATAGGCGAGCCTTCTTATATATATAATGGGGGGT
GGGTATCATAAGTAATAATAATATCCCCCTACCTTTATTCCCTCCCCCTACCGGAGGGTAAATAG
ATAGTTTGAAACGGGATCTTCCCTTCCTCCCGCAGGACCCATGGAAGGAGCTTCTCCATGAAAGG
TATGATCCCACGCACGCTGTTCCCCTTCCCTCTTTCCCTCCCGCTAGAGAGCCTTACATTCATTC
CGCTATCCCCCCTTACCGACCGCTCCCCTTACCGCCCCGCTCTACATAAACCCGCTCTACATACA
TAAAGCCTGAGCGCTATCCTTCACCGCTATCCTCCCAGGTGAGTCTTGACCGCTACCCAGACCAA
ATCCCCAGCAAATAAATCTGATTGCGTTGCGATCTTTCACACCGG
Right flanking sequence: Indices 340589 -- 341088
AGATAGGTTAAAATATAGATAGGTAGTAGGCCGGCCTTCCTTCATTAAGCCTCCCAACATGCATG
TCGGGTCGAGCTGGCTCGTGCGTGATAGATATATGTTGCGCTGGGTCCCGCTTCGTCGGACGGAC
TTTGCACAGAAAACAGCCATGCCAGAATTACTCTTTCCTTTCCGGGCTTTAAGTTACTCATCAGG
AGGAGGGGCTTGCCTCTCTGGTGGGGAAGGTTGTTACAGCCAATTCTCATATGCCCATTGCATAT
AAATGTCTTGTTGTGAAGGCCTGTTCTTCTCCTTCCTCTCGGCTATGGAATTCCTATCCAGCTAT
GGAAGTGGGAAAGGGTGCAAGAAGGGCATACCCCCCCAGCGGAGAGAGAACCTTCCATAAATGGC
ATGCTCCAGGAATAAAAAATTCATTTCTGTGCCCAGATTTGGATTCCTCGAACCCATCCAAATGA
GGTTTTGACTATGGAAAAATGCCAAATGAAAAGGACCGGAGGGGG
Found at i:340604 original size:16 final size:16
Alignment explanation
Indices: 340579--340612 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
340569 TTCCCTCCCT
*
340579 GTTAACATATAGATAG
1 GTTAAAATATAGATAG
340595 GTTAAAATATAGATAG
1 GTTAAAATATAGATAG
340611 GT
1 GT
340613 AGTAGGCCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (16 bp):
GTTAAAATATAGATAG
Left flanking sequence: Indices 340079 -- 340578
TGGCTGGTGGGGTAGGTAAAGAGAGAGAGGCGGCATGCGCATGCATTCTATCTGGTGTAGGGTGG
GAATAGGCGAGCCTTCTTATATATATAATGGGGGGTGGGTATCATAAGTAATAATAATATCCCCC
TACCTTTATTCCCTCCCCCTACCGGAGGGTAAATAGATAGTTTGAAACGGGATCTTCCCTTCCTC
CCGCAGGACCCATGGAAGGAGCTTCTCCATGAAAGGTATGATCCCACGCACGCTGTTCCCCTTCC
CTCTTTCCCTCCCGCTAGAGAGCCTTACATTCATTCCGCTATCCCCCCTTACCGACCGCTCCCCT
TACCGCCCCGCTCTACATAAACCCGCTCTACATACATAAAGCCTGAGCGCTATCCTTCACCGCTA
TCCTCCCAGGTGAGTCTTGACCGCTACCCAGACCAAATCCCCAGCAAATAAATCTGATTGCGTTG
CGATCTTTCACACCGGTTCCCTACCTGTTAACATATTCCCTCCCT
Right flanking sequence: Indices 340613 -- 341112
AGTAGGCCGGCCTTCCTTCATTAAGCCTCCCAACATGCATGTCGGGTCGAGCTGGCTCGTGCGTG
ATAGATATATGTTGCGCTGGGTCCCGCTTCGTCGGACGGACTTTGCACAGAAAACAGCCATGCCA
GAATTACTCTTTCCTTTCCGGGCTTTAAGTTACTCATCAGGAGGAGGGGCTTGCCTCTCTGGTGG
GGAAGGTTGTTACAGCCAATTCTCATATGCCCATTGCATATAAATGTCTTGTTGTGAAGGCCTGT
TCTTCTCCTTCCTCTCGGCTATGGAATTCCTATCCAGCTATGGAAGTGGGAAAGGGTGCAAGAAG
GGCATACCCCCCCAGCGGAGAGAGAACCTTCCATAAATGGCATGCTCCAGGAATAAAAAATTCAT
TTCTGTGCCCAGATTTGGATTCCTCGAACCCATCCAAATGAGGTTTTGACTATGGAAAAATGCCA
AATGAAAAGGACCGGAGGGGGTGAGGGGGTGAGGTACGAACCCTT
Found at i:348897 original size:87 final size:87
Alignment explanation
Indices: 348739--348899 Score: 213
Period size: 87 Copynumber: 1.9 Consensus size: 87
348729 TTCGTTCCAA
* ** * *
348739 AAAATAGAGGGTTTTAACACGAAACTCATTCATATGGGTGAGGAACACGAAGATTTTGGGGCCAA
1 AAAATAGAGGGTTTTAACACGAAACTCATTCATATGGGTGAGGAAAACGAAGATGCTGCGACCAA
348804 AGGAAAAGGAATAAGTTGCCCC
66 AGGAAAAGGAATAAGTTGCCCC
348826 AAAATAGAGGGTTTTAACACGAAACTCA-TCATATGGGTGAGGGAGAGGAACGAAG-TGCT-CGA
1 AAAATAGAGGGTTTTAACACGAAACTCATTCATATGGGTGA-GGA-A--AACGAAGATGCTGCGA
348888 CCAAA-GAAAAGG
62 CCAAAGGAAAAGG
348900 GCGAGTTGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
86 12 0.18
87 38 0.58
88 7 0.11
89 2 0.03
90 6 0.09
ACGTcount: A:0.39, C:0.14, G:0.28, T:0.19
Consensus pattern (87 bp):
AAAATAGAGGGTTTTAACACGAAACTCATTCATATGGGTGAGGAAAACGAAGATGCTGCGACCAA
AGGAAAAGGAATAAGTTGCCCC
Left flanking sequence: Indices 348239 -- 348738
CCCTATATTTATTTATTTATTCCCCTCAAATACGCGCAGGACCTTACCTTACTTAGAAAGGGTTG
ACCGGCGCAGTCAGGACCAACTCTTCGAGCTCAGGTAAGACCCAGTCAGGACCAACCTGGGTTAA
AAAAAATGAGAGGAAGGAACTACTTGTCCGCATCGGACAAGGAAGAATGGCTCACCTGACATCGG
AGGGTGAGGGTTGATCAAGACCTTACTGGCTGGCTGGGCTGACCCAGGACCTGATAAGACCTTGA
AGGCCCAGAATCAGGGGGGCCTTACTCTTAAAGTAGGTGAGCCTATAACGTGTAAGGGCCTTGCC
ATGACTTATGTAACGAAATCAACACCAGGTTACGTTTAGTTGCGAGACCAAAGGGTGAGGAGCGT
AGGGACGGTCGGAAGACACTCGACCGGACGCTAGGAGGTCGAGGAACACGAAGATTTTTTTGGGT
AGGGGCCCCTCACCTTCATGCTTCAAGTGAGCGACTTCGTTCCAA
Right flanking sequence: Indices 348900 -- 349399
GCGAGTTGTAGAGCCGCTCGACCGAGGATATGTATAGGATATAACCCTTTCCCCCCCCAATATAG
GGAAGCTAAAGGCTGTGTACAATCGAGCGAGAAATCCCTCGGCGAAGGATTTACCCCCATAAAGA
AAGAAAAGCGTCATTATATATATAATGAGATATATCTTTGTATACGATATTCTTCTATTAGGGTA
CGATCGATGATTCGAGCCTAAAGCGTGTTATTACATATATAAAGAATGACCAGCAGCATTGTCGA
AGGTACCATTTAAAGCCTATATCTTTTCTTTCACGTATTTACTCGTATCATTTCGGTAACTAGAG
AGAGAATAAAGAGTGTCTAAAGACCCTGGTGTACACTTACTTCTAAACATAAGTCCCGGGCTTTA
ACTGTAGCAAATAGGCCCTCATTCGGAAAGCAAGAGTCATTTAAAGCCCGGTATTCGTCAGAGTC
TATTTCAAGACTTTCCTGGTGTACACTTCGTTACATAAGTCATAG
Done.