Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_068215
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 2222920
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
File 2 of 2
Found at i:1280497 original size:19 final size:20
Alignment explanation
Indices: 1280473--1280511 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
1280463 ATGAGGAGTT
1280473 TAGGACAACTATAGA-AAAA
1 TAGGACAACTATAGAGAAAA
*
1280492 TAGGACGACTATAGAGAAAA
1 TAGGACAACTATAGAGAAAA
1280512 GAGTGAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.54, C:0.10, G:0.21, T:0.15
Consensus pattern (20 bp):
TAGGACAACTATAGAGAAAA
Left flanking sequence: Indices 1279973 -- 1280472
ACTCTTGGGAAGGGGGATGCAGGTAGCAGATGCCATGTACCTTCCAACCGCTCCTTTAGCATTTT
TTGACAGCGGGCATCAATGTTCAAAGCCTCAATACCACTTCATTACTTCTTTGGAAGAAGTGTGC
TTTTTTTCAGAAATCGGCTGCCGGCTGTACCTAATGGTATGCTCCCCCCGTATGAGAAGTTTTTC
AATCAAGTACCTGATTATGCCTCCTTGCGGGTACTGGGAAGTGCGTGTTATCCTCTGGCCATACA
ACACAAAACAAAGTCAACCAAGGCGCAGGATGAAAAGATCGATCGAGTTGAGGTCAGTCATGGTA
GAAAGATTTGGAAAACACCATATAGGTAGGGCAAGGATCCAGCTTTGAAGGTTGGTGATACTCGC
CGAGCACCCCCGTAGCCACACGACAGGTTTGATCCGAGCACGGTGTTTAGTTGAAAGACTGATGC
TTATTATGTGCCGATGCATAGTTCCTTTCCTCTCGATGAGGAGTT
Right flanking sequence: Indices 1280512 -- 1281011
GAGTGAAGTTCTCCGGCAATAATTCATTATATTAGCTTTTAGCTTTCACTCATAGAGTGTATTCA
CCTTAGGAATTAATTACTCTGGTTTTTTCCCTGCCCATCTATGTTGGGTTTATTTCCTAGATATC
TAGAGCATCTCTTTCTTCAATAGATGGTACTTGTCTTATCTCGACAAATACATCGTACGTAGGCC
ACCCACTAGCCCATTTGGACAGGCAATCAATCGGCTTGGACAGTTTCATGTAGAAATACCTCAAA
AAATACCAATTTTGATGCAAACGCAAAGAAAGATGGAGTGGTATTTTTCCATTACAATTAGCTTC
GTGAAAGCCATTAAGCGAACCATAAGCTGTGAATCCACCCTTATGACCCTATTTCCTACTCCCAG
TGCACGTACCAAGGTAAGTCCATTCTCATATTCCACCATGTTGTTCGAGGCAGTAAAGGCAAGCT
GCATAGCATGTTTAGTCGCATAACTAAAAGGAGACTGCCAAATTC
Found at i:1293274 original size:21 final size:21
Alignment explanation
Indices: 1293248--1293289 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1293238 GAACTAAGAC
1293248 TTTGTGATAGGAAAGGATACG
1 TTTGTGATAGGAAAGGATACG
*
1293269 TTTGTGATAGGAAAGGTTACG
1 TTTGTGATAGGAAAGGATACG
1293290 GTTAACTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.33, T:0.31
Consensus pattern (21 bp):
TTTGTGATAGGAAAGGATACG
Left flanking sequence: Indices 1292748 -- 1293247
GCCTAAGCATAGGGCAAAGACTGAACTCATTTCTCTGTCCTCAAAAGCAAAAAGCAGAGGTCGCA
GGTAGGTTACGTAGTCCGTAACCATTAAAGGCTAAAGAACCATCGCATCCTCAACTTTGATTCAT
CACGACCTTTCAAACAAGGATTTCTATGAAAGTGAGTGCTTACAAAGTAGTTCGGTATTAAGACA
AAGCATAACCTCGGTAAGAGTCTCGCACAGATACAGGTTGATGACTTCAGTGTGAGGGTGAACGC
ACAAAGTCCCCAGGTACCACAACCCCAGTGCGGCAGCTCTGTATGCTTTTTGTTGGATTATCTGC
TTTCTTAACATTATCTTGATGCTAGAAGATAAAGTAAAGAACTTATGCCTAGCACTACCTTTTCA
TCTATCAATATAGAATATTGGAATAAGTAGTAGGCCCATAACGTAATTTGATAGTTTGGCAAGGT
AGGACAACACTTCTGAGGGCTGGGTAGGCTGGTAGGAACTAAGAC
Right flanking sequence: Indices 1293290 -- 1293789
GTTAACTTAGACTTTATCATGGATCATGGCGTAGATGAGGTTTGGCCAATAGGAGAAGGAAAAGA
AGAACTCCCTTCACGAGAAGAAATCAAAGAGCTAACTGTATGTATAACCGCGTTATTGTACTTAG
GGGAAGACATCTATTTAGTAGCTTTATACCACATGTTAGGCTGTCTTTGGACTCTCTAGGCTGCT
TACTAATGAATGCCTTTCGAACTACTCCCTCTATGCCAGAAGTACAACAATCTGCATTTATCAAT
AACCAGCTATCCTCTTAACCTCTCTTTTCCTAGAAATGGAGTACTCAAAGGCTTGCATCAGGAAA
GGCTTGCTCTATATTCAGTACTTGCATTCTCTTTTCTTTGACCATGGACAATGAAAGGGCATAGA
GATTTTCTTCATTAGCTTACGTGATGAGGTGATACAATGGAATAGAGTTCATTAAGATACGTCAA
AGATGATGGGCTTTCATGAAGTATATAATCACTAGTTCAATATCC
Found at i:1294964 original size:21 final size:20
Alignment explanation
Indices: 1294940--1294983 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
1294930 CCTTCACTTA
* *
1294940 TCTCCACCACTTCCTCCTCGT
1 TCTCCACAACATCCTCCTC-T
*
1294961 TCTCCTCAACATCCTCCTCT
1 TCTCCACAACATCCTCCTCT
1294981 TCT
1 TCT
1294984 TCCCAAGGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.11, C:0.50, G:0.02, T:0.36
Consensus pattern (20 bp):
TCTCCACAACATCCTCCTCT
Left flanking sequence: Indices 1294440 -- 1294939
GTTTACCTCTGCATAAAGCCTTGCACCCACTTTTCTTGTAAATGACTACTTTGACTGACCTATCT
TTCTCGACCTATCCATGCCCAACACCACATCGTATGCCCCTAGCTCAATGACCCTCAATTAACAC
AGGAAGGTATGACTTTGACCCTCTAATTTCACTCCTGTACATTGACCCTCACTGCCAATTTTCTG
ACCATTAGCCACTGTTATGATTCAAGGCATTCTTTTGTTAACATTGAACTTTAGCTGCTTGGCTA
AGGATGCATTGATTCAGCTAGTGTTGCTTCCTGTATCCAGCAGGATAGTGATTGGTTTCCCTTTG
ATTTGACCCCAGTGAGTAACTACCTTTTGAACTCGTAACATTAGTAGTTACTCGTCTGTTACGAA
CGAAAAGGGCAAAGTAGGATTGCCAGGATCTCCCTATAATGCATTCAGTGAAATACGGGGTTCAT
CCCCATCCGTACCCTCCTGTTGGAATTGCTCTACTCCTTCACTTA
Right flanking sequence: Indices 1294984 -- 1295483
TCCCAAGGGTATCTCCGGGTATTCATTAGTTTCAATTTCTTCTCTCTACACTGATGCCCTGGGGC
CCATGGCTCCTTACAAGAGTAACACAATTTCTTGATTTTGGGGTTGGTGTCTGCATTAGGTTTAG
TAGGGTTGTTGTATCTTTTATGCCTATTTGAAAACTAGGAGCCAGGTTTCTTCGAGAGTGAAATT
TGATGATGTAGAAGATCAGTTCTGAGATTTTGAAGGCACAGATTTGGCGGGATTTTCTTCTTCCC
CAACCTCGGAAACAACATCTCCCACGACACACGAATTACCCGCAACGAGTTCACTCTTCGGAAAG
CCCCTACTACCTGAATAAGATCCATTCGAGAAACTTCACTGTTTGACAGGTTGTGTTCGAATTTC
ACACGCCCCTTTATATGGAGCCCCTTAGAAACTTCCTCCTTACGGACTACACCTCCGCTCAAAGC
TTCTTTAAGGGCTCGCGCCTCTGGCTTTTCGCACGTACGTACTCA
Found at i:1303119 original size:24 final size:24
Alignment explanation
Indices: 1303092--1303162 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
1303082 CTCTCATGCC
1303092 GTAGTTCCTCACTGAGTGAAAAGA
1 GTAGTTCCTCACTGAGTGAAAAGA
** * *
1303116 GTAGTTCCTCACTGAGTTCAAGGG
1 GTAGTTCCTCACTGAGTGAAAAGA
1303140 GTAGTTCCTCACTGAGTGAAAAG
1 GTAGTTCCTCACTGAGTGAAAAG
1303163 GGGGCTCTGG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (24 bp):
GTAGTTCCTCACTGAGTGAAAAGA
Left flanking sequence: Indices 1302592 -- 1303091
AAGGAACCAAGCCTGGAACACATTTCCAACAATCAACTTCCCACTTTGGGTGTCCCCTTTCTTTG
ACGATTCCGCTGCGTCTTTAGAAAAAAAGGAGAAGGAAAGGCAGGGGTGGCTAGTCAGAAAAGCT
ACTATCAAAAGAAATTCGAATTCTGAATGAATCCAACCTCCCCAAGTAGGATTCGAACCTACGAC
CAATCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGACTGAAGGAAACCG
ACTCTCATTCTTTGGACCCACCGCAGACCGAAAAGAAAAAAAGTGCGTAACTTTTTCTTTTTCAC
ATACATACACCGAACAAGCACCGGCTGCCTGCGCGAAAGCCGGTGCGCGTTAGGCGCATCCGTTT
TCTTGCAACGAGTAACTACTACTTCTTTTGGTTCTCTTTTGTTAGGAGGAGCAGTGAGCAACTAC
TAATGTTGCGAACAAAGGACACGTTCTACGTGTATCTCTCATGCC
Right flanking sequence: Indices 1303163 -- 1303662
GGGGCTCTGGGCTTTGAGTGAATTCACTCGGTGGGGTCGTGTTAAGTTTCGAAATTCTCACATTG
TAGCATCCTTATTGGTAATCTAGCTTTTACTTGAGCCCTTTAAAGAACTCCGCCAGAACTCTTAA
TATGAAAATACACATCATAAAATGACGCATCGAGCGAGACGAGACCATTCTCCCCCATTGTGAAA
GACGTTTTCGACCAACAACATCGACTAATATCCAGCTTCCTTTCTTTTTTCACATAAAATCTTTT
TCTACGATGAGTGTAATGTTTAACAAGATATTTCTGAATTCCTTCGATCTCATAGATATCATCCC
ATGTGTTGAGTTCTTTCATCTCTTATTCCAGACGTTGATCGACTTGCATAACTTGTGCCGCCTAT
CGCTGGCTTCAGCAAGACGCCACCCAATAAATAATGAATGTGGAATCAGACATCCATGGCAAAAC
CTGCCCTGCTATACTGCCCACCCCATCTGAGCTTTGGACTCTAGA
Found at i:1304008 original size:24 final size:23
Alignment explanation
Indices: 1303974--1304059 Score: 118
Period size: 24 Copynumber: 3.6 Consensus size: 23
1303964 CGCAACATTA
*
1303974 GTAGTTGCTCACTGAGTGAAAAAG
1 GTAGTTACTCACTGAGTG-AAAAG
*
1303998 GTAGTTACTCACTGAGTTCAAAAG
1 GTAGTTACTCACTGAG-TGAAAAG
*
1304022 GTAGTTCCTCACTGAGTGAAAAG
1 GTAGTTACTCACTGAGTGAAAAG
1304045 AGTAGTTACTCACTG
1 -GTAGTTACTCACTG
1304060 GGGCAATTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
23 6 0.11
24 48 0.87
25 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (23 bp):
GTAGTTACTCACTGAGTGAAAAG
Left flanking sequence: Indices 1303474 -- 1303973
ATAGATATCATCCCATGTGTTGAGTTCTTTCATCTCTTATTCCAGACGTTGATCGACTTGCATAA
CTTGTGCCGCCTATCGCTGGCTTCAGCAAGACGCCACCCAATAAATAATGAATGTGGAATCAGAC
ATCCATGGCAAAACCTGCCCTGCTATACTGCCCACCCCATCTGAGCTTTGGACTCTAGAAGTAGT
GTCTCCACCCCCGCAGTCATCCTGTGTGTTGCTCACCTTCCGCCTCCGCCCCCATTGTTTCGAGA
CAGACCACCTACGTAAGTAGTCTTCTCTTCTATTTTGATTTCAAGCTCAGGCTCTATTTTAAGCT
CAAGGTTCGTAAAAGGCTTCTTTGGTTCTCTTTTTGGTGAGAAAAATTGGGCTTTTCGTTCGTAA
CAGACGATACACTACGGCATGTTCCTTTTGGAGAGATACACTACGTTCGTGTATCTCTCAAAAGC
GTAACAGACGAGTAACTACTAATGTGTCCTTTGTTCGCAACATTA
Right flanking sequence: Indices 1304060 -- 1304559
GGGCAATTTTCGGTCCTGTTGCTTCTGTCAAGTTTCATTTGTTCTTGAAACATACTATACTTCAT
TTTGAAGTACATTTCTAAGGGCTAACTGGAATTCATCCTTTTTAGTCAACCTGCGGGTCCAAGTC
TCATGAAAAATTTCTATGGGTCTATCTCGACCAGGTTGAGTTACACCTATCGGGCCGGTAAACAA
CTGCAAGCTCTAGTCAAAAAGAAACCTGAAGTTAGTAGGATCATACATAGAATATGCTAACAAGA
AAGAACTTTCTCTTTGATGCAAGACAGGGTCTTTACTGATACACCCATGCGGGCTTGAGGCACTT
CTGACAGCCTCTTGCTCATCCCTCTGGTTTAACTCCTTTGTGCACGCAATACTGACTGTGCCCAG
CGAGTGGATTTATTCACGAGCCTAGAACGAGATATCACTCGCTGCCTAAAAAGCGAGCTACAGAA
TGTAGCGAGCTTATTCCATTATTGGGGGGTGAAGCCTGCTTTCAC
Found at i:1335411 original size:23 final size:21
Alignment explanation
Indices: 1335385--1335431 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
1335375 ATCGATTGGA
*
1335385 GAAAGACCACAACCTATTGAGAT
1 GAAA-ACC-CAACCTACTGAGAT
*
1335408 G-AAATCCAACCTACTGAGAT
1 GAAAACCCAACCTACTGAGAT
1335428 GAAA
1 GAAA
1335432 TCCTACGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
20 14 0.67
21 4 0.19
22 2 0.10
23 1 0.05
ACGTcount: A:0.45, C:0.21, G:0.17, T:0.17
Consensus pattern (21 bp):
GAAAACCCAACCTACTGAGAT
Left flanking sequence: Indices 1334885 -- 1335384
CTAGCTTAGGATGAACTTTGGCAAGGAACGGTGGCATCAGCAGACCCGATGAAACAAGTTCTTCC
CTACTTTCTTCGTACCCAACAAGTCTCTCGAGCATTTCTCCATTAATCATGAACGGCACCTCTTG
CATGTTGTTTAACAACCTGCATAGTCTCTCATAGGCTTCCACACTGTTGAACTCGGCGTGGAAGT
GATCATAGTCTTTTGAGGTCATGTACCTCCGAGGTGTTAGCGCTTCTTAACCTGGGTTCAAGTAA
CCCCCTTTTAGATCAGTTGGGGCAATTCCACCCATAGCATAATCTTGACTAAGAAATCTTCCACC
CGGCTGTCAACACGGAAGGAAAGAAGGAGATGGTAATGTATCTGATGCTGATCCCGGAGAGAAAG
ATGGCTTTCAGGAGGCTGATGAAGATGATCCGCTCAGTGACGAGGATGAACATTAAGTAGAAAGA
AGAGAGGGAGATTCTGGTAATCGGGGAAGGTATAGATCGATTGGA
Right flanking sequence: Indices 1335432 -- 1335931
TCCTACGGGGGGGAGGTGATGTGCCGAGTGCAACTTGGAGTTTGTTAGTGCATTGACATCTATCA
TGAGGCATGTGTACTCAGGGGTTGAGGTGAAAAACACAGGGAGTGGTAGCAGTGGTTCGCGTCTG
GCGGGTCCACCACCTTCTGAGGCTGCAATTGCGTTGCTAGTAGAAATGGGTTTCCCCTGTGCGAG
AGCTGAAGAAGCTCTGAGACAGCACAAACGGTGTGGAGATTGCAACTGATTGGCTATTCTCACAT
CCAGAGGAGCCGCAAGAGGATGATTACCTTGCACGTGCACTTGCCATGTCTTTGGGCAACTCCGA
TTCACCATCTATAGAAGAGGAGAAGAACGAGCCGGAGATCAAGATAGAGGAAGCACCGATGCAGC
TACCGCCAATAGATGAGATGCTTACCTCATTCGTAAGACTTTGGCAAATGAGGGAATCACTTGCT
TTCCCGGTCCGAGACATGCTTGTTACAATCTGTTCGCGGAATGAC
Found at i:1335417 original size:20 final size:20
Alignment explanation
Indices: 1335394--1335434 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
1335384 AGAAAGACCA
*
1335394 CAACCTATTGAGATGAAATC
1 CAACCTACTGAGATGAAATC
1335414 CAACCTACTGAGATGAAATC
1 CAACCTACTGAGATGAAATC
1335434 C
1 C
1335435 TACGGGGGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (20 bp):
CAACCTACTGAGATGAAATC
Left flanking sequence: Indices 1334894 -- 1335393
GATGAACTTTGGCAAGGAACGGTGGCATCAGCAGACCCGATGAAACAAGTTCTTCCCTACTTTCT
TCGTACCCAACAAGTCTCTCGAGCATTTCTCCATTAATCATGAACGGCACCTCTTGCATGTTGTT
TAACAACCTGCATAGTCTCTCATAGGCTTCCACACTGTTGAACTCGGCGTGGAAGTGATCATAGT
CTTTTGAGGTCATGTACCTCCGAGGTGTTAGCGCTTCTTAACCTGGGTTCAAGTAACCCCCTTTT
AGATCAGTTGGGGCAATTCCACCCATAGCATAATCTTGACTAAGAAATCTTCCACCCGGCTGTCA
ACACGGAAGGAAAGAAGGAGATGGTAATGTATCTGATGCTGATCCCGGAGAGAAAGATGGCTTTC
AGGAGGCTGATGAAGATGATCCGCTCAGTGACGAGGATGAACATTAAGTAGAAAGAAGAGAGGGA
GATTCTGGTAATCGGGGAAGGTATAGATCGATTGGAGAAAGACCA
Right flanking sequence: Indices 1335435 -- 1335934
TACGGGGGGGAGGTGATGTGCCGAGTGCAACTTGGAGTTTGTTAGTGCATTGACATCTATCATGA
GGCATGTGTACTCAGGGGTTGAGGTGAAAAACACAGGGAGTGGTAGCAGTGGTTCGCGTCTGGCG
GGTCCACCACCTTCTGAGGCTGCAATTGCGTTGCTAGTAGAAATGGGTTTCCCCTGTGCGAGAGC
TGAAGAAGCTCTGAGACAGCACAAACGGTGTGGAGATTGCAACTGATTGGCTATTCTCACATCCA
GAGGAGCCGCAAGAGGATGATTACCTTGCACGTGCACTTGCCATGTCTTTGGGCAACTCCGATTC
ACCATCTATAGAAGAGGAGAAGAACGAGCCGGAGATCAAGATAGAGGAAGCACCGATGCAGCTAC
CGCCAATAGATGAGATGCTTACCTCATTCGTAAGACTTTGGCAAATGAGGGAATCACTTGCTTTC
CCGGTCCGAGACATGCTTGTTACAATCTGTTCGCGGAATGACGGT
Found at i:1343776 original size:29 final size:29
Alignment explanation
Indices: 1343744--1343805 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
1343734 CTTATGTATA
* * *
1343744 CCGCTATGGAAGTTTGTGTCCGGCTTCAC
1 CCGCTATAGAAGTGTGTGTCCAGCTTCAC
* *
1343773 CCGCTATATATGTGTGTGTCCAGCTTCAC
1 CCGCTATAGAAGTGTGTGTCCAGCTTCAC
1343802 CCGC
1 CCGC
1343806 GGCGAGGAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.31, G:0.24, T:0.31
Consensus pattern (29 bp):
CCGCTATAGAAGTGTGTGTCCAGCTTCAC
Left flanking sequence: Indices 1343244 -- 1343743
AATCCGGAAATCAAAAGGTAATCCGGCCGTGCACTGCTTGATACTGCTCCAGCTAAGACTTTTCT
CTTTGACAGTTGAAGCTGCATCACCAAGAGTATAAAGCTCTCAATCAATCTATAGTACTCTTTCT
CTTTCAAACTAGAAATAGGTATACCGGAGAAAAGAAGGGAGGTAGAGCGCTTTACTACTTGCTAA
TAAAAGTCGATTAATAGAAAGCGAAGCCTTGAGTAGAATCTCTGAGAAAGCATTCTGAATGAGAG
GAGTTAATTAGAGGTTTTGGAGGCCCATATTGCGTAAGAAGAGTACGAGCTATTGTGCTTTCAGA
AGTCGAACTGTACCTCCGCGAAAGTGAGGCCAGCCACATAAGTTCACCTGCCCAGCCGACTCCCG
CATAAAAAGATCCAGCTTTAGCTTATGCTTTCTTCTGTTTTAAGAGAAAAAAGTCTAAGGAAAAG
AAAGTCAAATGAGTACTCCCACTCAAAGTTGGATTCTTATGTATA
Right flanking sequence: Indices 1343806 -- 1344305
GGCGAGGAGGAACTTTTTCTATTCAGTGAAGATTATTTCTCTATTTGATGAGTCTATGAAGAAGC
TAGTAGTATAGAGAATTTTGCTTAGTGATCAGTTTCATTCTTTTCTTCGGAGATTCGAGAGAGCG
AAATCCAATCCATAAGTATGCCCTTTTCACGCTGTTTCATAACAAGGAGAATTGGATAGGTGACT
TTCCCTTCAGCTTCAGTGCTAAGCTTTTACGACGTATTTGAGAAAGCAGTAGTGCACGCTTCAAG
AGAACCCGGCCGGAAAGCTAACAAACTGTCTTGAAACCTGATACCAATAGGCAGTACCACAAGAA
AAGAAGCATTCGAGGTGGACCAGGTCTATTTGCACATAAAGTATCCGGTTCTCTTCGTCTATCCT
TCAGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAGCATTCTACTTCCCCCTAT
TGGACATTCTCCTTCCCCCCTATTGGATTACTAGTCTCGCCTTCT
Found at i:1344268 original size:22 final size:23
Alignment explanation
Indices: 1344243--1344287 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
1344233 CCCACCTGAG
1344243 CATTCTACTT-CCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
*
1344265 CATTCTCCTTCCCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
1344288 TTACTAGTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.16, C:0.40, G:0.09, T:0.36
Consensus pattern (23 bp):
CATTCTACTTCCCCCCTATTGGA
Left flanking sequence: Indices 1343743 -- 1344242
ACCGCTATGGAAGTTTGTGTCCGGCTTCACCCGCTATATATGTGTGTGTCCAGCTTCACCCGCGG
CGAGGAGGAACTTTTTCTATTCAGTGAAGATTATTTCTCTATTTGATGAGTCTATGAAGAAGCTA
GTAGTATAGAGAATTTTGCTTAGTGATCAGTTTCATTCTTTTCTTCGGAGATTCGAGAGAGCGAA
ATCCAATCCATAAGTATGCCCTTTTCACGCTGTTTCATAACAAGGAGAATTGGATAGGTGACTTT
CCCTTCAGCTTCAGTGCTAAGCTTTTACGACGTATTTGAGAAAGCAGTAGTGCACGCTTCAAGAG
AACCCGGCCGGAAAGCTAACAAACTGTCTTGAAACCTGATACCAATAGGCAGTACCACAAGAAAA
GAAGCATTCGAGGTGGACCAGGTCTATTTGCACATAAAGTATCCGGTTCTCTTCGTCTATCCTTC
AGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAG
Right flanking sequence: Indices 1344288 -- 1344787
TTACTAGTCTCGCCTTCTAGTTACATACTATCTTCTTACAGTGGATCACCATCTTGACCTTTCCT
ACGTTCATGCGGGAGCCTTGATTTAGTACTGGGGCTATGCCTATTGCTCTGTTGCCTATAAGTCT
CATACATCTGTATAGGATCTCATCCATATTATCTTATAGGAAGAGTAGTAACTACCTGCATTCGT
ATATTCCAAAAAGAAGAAAGAATTCAACCTAGTAGAGTATAACTTTGCTTGCCTAGCCTTTCAAA
GCTATTGTTTGATTCTAGAAGGAGATTGGAATTGATTGGAAGAAGAAATAATATCTAAAGAAATA
GGAGTCTACTAACTAAGCTAAGAGAAATAGGAGTCTACTAAGCGATGGTAATACGGATTCTCCTT
TGAAAAAAAAAAGCAAGGAAATCAAGTCAATATTCTCTGGTCAATGAACGTTAAGGAATTTAGAG
AACTCAAGTCCACCTTCCTCCTACGATATCTCTTTACCCTTGGGT
Found at i:1345510 original size:18 final size:18
Alignment explanation
Indices: 1345487--1345522 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1345477 ACTTTAATAC
*
1345487 GTCTTCCCGCCTACTTTA
1 GTCTTCCAGCCTACTTTA
*
1345505 GTCTTCCAGCCTGCTTTA
1 GTCTTCCAGCCTACTTTA
1345523 CTGAATACCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.36, G:0.14, T:0.39
Consensus pattern (18 bp):
GTCTTCCAGCCTACTTTA
Left flanking sequence: Indices 1344987 -- 1345486
CAAAGCAGATCCCCTTGTCCCATTCCAGGAGAAGGAACGAAAAGTAGCTCTACTGATAAGTGGAG
GAACGACCGGCAAATCCACAAGAAGGAACTACACCTTTCGGGTGCAGCCGCTCAAAAGGCGGGTT
AACTTCCCAATGGTGGAAGGAATTGCTCCCGGTTTTTAGTTACTATCTAGCTTTATAGTTTGCCA
GGCCGATTAGGTTACCAATGCGTTATGGAATAGCTCCAGAAATCTAGTTATTACCTAGCTTCAGA
TGTTCGACGTTGTGATGAGAACTTTATTAAAGAGTTAGGAAGGAAGTCTCCCTTTCTGACATTCA
AGTTGTTACCAAGGCCGCAGGTTTCGGTTTTCTTACTTAATTATTGCCAAAAAATCAAGGCGCGA
AGCAATCGCACTGTTTTCATGAGCTATGAACATAACCTAAAACTCCGTTTTCTGCTTGAGCTCGT
TCGAAGTTCCGTGTCCGTAGCACTTGTCTTCTGAGACTTTAATAC
Right flanking sequence: Indices 1345523 -- 1346022
CTGAATACCCACCTCAATCCACCTCCTGCAGCGGAACCAGCTCGTTCAAAGTAGTTAGCCCATGC
CTTTCCTTTTGTATAAAATCGCCTGTTGGCACTCCCCCACAAAAAAAGGTATTTCCTTCCGAGAG
TATACTCTCTTTCTGCTTTCTTATGGGCACTCGTTTTTCCCGGGTATCTGGTTCCAGTTACTTGG
AAAGGCTTAAAGCTCTACCTTGCAGTTCAAAGTCTAGAAGCAATTCCCTCGGTGTATCCATAAGC
CAACAATATATTTCATAAATATTGGTGTCTACCGCACAAAGAGTATCAACCGTGTCACATTCGGC
CACATTGGCCCCCTCCGAAGCACCCCCGTGTGTATCCGGCGTTTTTTCTTTTTGAGCTTGAAAAA
CGCGGTCTTAATGTGTCCCTTCTTCAACCAATAATTACACGTTAGATTCTTGTGCTTAGACTTTG
AACGGGTCCGTGTATCCTTCGGGTTTCTGTCCTTTGACCTACCCC
Found at i:1347506 original size:16 final size:16
Alignment explanation
Indices: 1347485--1347517 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
1347475 GAGAAAGCAA
1347485 TAGGCATATAGATACC
1 TAGGCATATAGATACC
1347501 TAGGCATATAGATACC
1 TAGGCATATAGATACC
1347517 T
1 T
1347518 TAGGAGGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (16 bp):
TAGGCATATAGATACC
Left flanking sequence: Indices 1346985 -- 1347484
CACAGAAGGAGTTCTCTTTTATTATCATATTAGTTAGCAACTCCAATCTAATAATGATCTTTGAA
GTAACATCTAATTGAGCTACCTAGGAAAGAAGACCTCAATGAGCTAGAAAGTCATGTTTGGAAGG
AAAGAAAGACCTGGCAAAGAAAGTAAGGTAGCGGGCAGTGTAGTGAGTGCTCATATGAAAGGGGG
CATGGGCTTTGAACTCAGTGAGCAACTACTAATGTTGCGAACAAAGGACACATTAGTAGTTACTC
GTTGCAAGAAAAGTAGTTTCATTCTTTTTTCCTATTCTTTTGAAGAAACTCATAGAGTTTTCTTT
CAAGAAGCAAGGTTACGGCCGAGATAGTTCTTTTTATTACCGAGATAGGTGTAACCGAGGTTTCT
TAGGCAAGTCAAATGCTTTAGTACTACAAAGCAAGCACTGCTTTAGCTAGTCAAAGAGTTGGCAT
CTCGAGTTAGTACTTGTAGGCAAGTAGAGTGGTGCGAGAAAGCAA
Right flanking sequence: Indices 1347518 -- 1348017
TAGGAGGTAAGCTAGGTAAGAAATTCAAGTTGTATGTGGAAGCAGAGATAGATGCCTAACTAATA
GAAGAGATAGGAACAAAGCAAATAGTTCAATCCCAACAAGTTGTTCAGTGTTTCAAGTTTTTTCC
GTCGCTTGTCTTCTAAAGAAAAGTTTGTAGTAAGGAGAGAGTAGTGTAGTTTCTAACTTCATTAG
TGTAGTTTGTAAAGCTAGAATCAGTTTCAACAAGCAAGTTCTTTCTTGCCTAGTTGACAAGGTGC
GCAGCGGTAGAATTAAGTTACGAAGAAAAGAATGTAGTGTGCTTTATTAATCCAGTACTTTCGGA
AGTAGTAAGGTTCAAACCCTCCCTAGCTACCAATCAAATCAGTGTTGAAAGCATACCATCCCTTT
TCACTCGTAACATTAGTAGTTACTCGTTGCGAGATAAAGCACGGATATTTTCGTTGATGAGTATG
AGTGATAAGTGCCCAAAACCCCAGAATGCCCCCTCTTTTTCTTTA
Found at i:1365648 original size:21 final size:21
Alignment explanation
Indices: 1365619--1365663 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
1365609 CTTTGGCTCA
*
1365619 TATCTTATCCTAGCTATTCTG
1 TATCATATCCTAGCTATTCTG
*
1365640 TATCATATCCTCGCTATTCTG
1 TATCATATCCTAGCTATTCTG
1365661 TAT
1 TAT
1365664 TCGAATCAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.24, G:0.09, T:0.47
Consensus pattern (21 bp):
TATCATATCCTAGCTATTCTG
Left flanking sequence: Indices 1365119 -- 1365618
TCCCCATTATGATATGCGTCAACGTAAGGAATTTGAGAAACTACACTTGCCCTCAAATCCCATCT
CGGGCCGATTATGAGAAAGAAGCACCAATAGCATAAAGCAATTGCTATCATGCTTGGAGCATAGA
TAGAAGAGGTATGGGTATAGGTAAAATGCACACCCAGGTATGTGAAACTATTTCTAAGTAAGATA
GAGCTAGTTCTAGCTTTGTCAATCGTGGAATGAACAGCACCTTCCTTACCAGAGAAAAAATACCT
TATCCACTCCGATACTGCTTTCACAAGCGGACTTTGCAAAATCCTGGAAAAACAGACATTAACTC
GGTATGAATATAGAAGTAGGCTAACGAGAGAAATTCCCTCTTGCGCCGGTAGTATTTTAAGCAGC
TGAGATTCGAAAAGCGAGTTCATTTTCCACAACGCGCATTAAGGAAGCACTCACTGAATGGAAGA
GGATAGTAAACACTACAGCTCTTCATCTTGAATTCCTTTGGCTCA
Right flanking sequence: Indices 1365664 -- 1366163
TCGAATCAGAAAGTCAAGGCAAGGTATGTTTACTTTGGTGTGAGAGAGTGAGATCCTTCTATGGA
ATCCCCCACCCACTCGCGAAAGGCATTATAACTCCTTTCATAGAGTTCAGCAGCCCTCAAAAGAA
TAAATAGTATTGGTATATTGAGAGCTCGAAGAGATTTCATGGATATAGTTTTGATTGATATATTC
ATGGTAAGCTCGAAGTAGAGAATCGACATGACCCACGCTGCGCGCCTCTCCTCCTCATTCTTGAA
ATTGCTAGGGTAAATGCTTTCCATTGCAGATCGTAATGTGTCAATAGGAAAAGGTTTAGGATCAT
CATCATCAGTAAGACGAGACACTCCAGGGTAAGAATAGTCAATCTTATAGACATGATCTATATGG
AATCCGGCAGTATCTTTTTGAGTATTCATGAGTGAACGATAGAGACTTTTCACTCTATGAGGTTA
TCATAAATGATTCGGTTAACAATATATAGTGGTGGTGTAAGATCA
Found at i:1368100 original size:21 final size:21
Alignment explanation
Indices: 1368072--1368118 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
1368062 CTCCCATATA
1368072 CCTA-GCTAGCTCCTTGCCTG
1 CCTATGCTAGCTCCTTGCCTG
1368092 CCTATGCTAGCTCCTTGCCTG
1 CCTATGCTAGCTCCTTGCCTG
1368113 CCTATG
1 CCTATG
1368119 AGCTGAAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.11, C:0.38, G:0.19, T:0.32
Consensus pattern (21 bp):
CCTATGCTAGCTCCTTGCCTG
Left flanking sequence: Indices 1367572 -- 1368071
GGACAAGCACGCTGCGCGCCTTTTCCTATTACTAGACTTTGCAACCACTATGACGCATTCCATGC
TTCTAGTTCTAATCGTACCTGTAAACTAACTCAGAAATCCATATTGAGGGCGCAAGCGTTCAAAT
CACATAGCTAGCTGCTACTAAGTAAATTAGTCCAATGAGAATGGAGATAAAGAAGGACATGAAAT
CCATTAGCAGCTCTATCTATCAGTTATGTCATTACTTGCATTCCTCAACCAATAGCAAGGAAGAT
CACTATGACTATATGAAAGCATTGAAACCCTCTCTCGTTGGAAGTTCCCCCTAGCCCCCTTCTAT
AACTTACTAGAATTACTCGGGGAAGATTCACGATCCCTCCTTATCGAACCATAGCCTTCCCATTT
GCTTCAAATCCCCGGTAGGGTCCGGGTTACTCAAACTCCGCCTTCTCCCCCGCCATCCCCCCAAA
TTTTCTTTGATGTCGCGCACAGGCCATATATGGTTCTCCCATATA
Right flanking sequence: Indices 1368119 -- 1368618
AGCTGAAGTGCTGTCCTCAAGGCATATAGCCAGCCGTAACGGTTGTCTGATTGGTATTTTTCCTT
GCTTGCTTCTTTGCTTTTGCTTCCCACAACAGAAGGAGGCCTTACCTAAGAAAGATCAAAAGTCA
GTCCTTCCTTACCTACTACATATCTGAAACCAGCACACATCTACCAGTGAGAATTCCCTTTTACA
TACTTTCGTTGATATTCAACGAAGCCGCTTTGAGGAGTCAATAGTGTAGTGACTTGCTAGCGTAG
TGAAATGAATGGTGTAAACAACGAGGTTTTTCCAGATGTATGAATTGCCTAAATGGATTGAGTGT
ATACGATATTCTTCTTCACGGACACAACAAGATGAAGAAGGAAAAGCCGAAGTAGATGAACCCAG
AATTTAGGAAGGCAAAACCGGGACTGAGGGGGGGAAAGGAGGAAAAAACGGGGAGAATTGATAGG
ATAACATATCCCGAGATAGATAGGCTCTCATTTGTTGACCAATTT
Found at i:1388187 original size:30 final size:30
Alignment explanation
Indices: 1388153--1388213 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
1388143 CAAATCCAGA
1388153 CAAGTACTCAGCTATACCAATACTTTCTTT
1 CAAGTACTCAGCTATACCAATACTTTCTTT
1388183 CAAGTACTCAGCTATACCAATACTTTCTTT
1 CAAGTACTCAGCTATACCAATACTTTCTTT
1388213 C
1 C
1388214 TTCTTCTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.36
Consensus pattern (30 bp):
CAAGTACTCAGCTATACCAATACTTTCTTT
Left flanking sequence: Indices 1387653 -- 1388152
AATAGCGACTGTACTATAGGAAAGACATCTTGGGCTTGAAATCGAAGCTGCTCATCTGGGACTCT
TATTTAGAATCAAAACATTCTTTCTTCCACTCTACAAAAGCCTTGCTCTGCATCTTTGTCAATGA
GATAATTGTTTCACCTCTCTCACGTTGTGCTTTTCCATTCTTCTTGTACCAGTAGACAGGTTCAG
TCCCTTCCTTAGACCAGTGTGCTTGCACTCTGTCTCTTACTCATCCAAAAAAAGAATTAGCTTCT
CAACCCCTCAATACAAGACCTAGAATTAGCACCATCTTGGAAGTTGGTGAAATCGGTCTGCGATC
TTCTTCCATCTGGTTTAATATGAGCAAGAGGAGAGGTGGATCGATTCGTGAGTTCATCTTCTTTT
TATATGGTCAATCATAGGTATGGAAAGCAAATCCATCATAGGGGCAGATCTTTACCCTTAGTAAG
TCCATTGGAAAAGGCAGATGCTTACGTTGCTATTTCAAATCCAGA
Right flanking sequence: Indices 1388214 -- 1388713
TTCTTCTTATACGATAATACATATAAGGTACCCTGAAGGACAATATTTAGGTAGGGAAATCCAGC
AGACAAGGGAAAGATTCCGCCGGGAGGGTCAAACGCTTTACTTACTTTTACATACAGTGTATTAC
CCTTCTTTTCTTTATTCTTTTACTCCACTTTGGGTTACTATTCCCTTTGCATACACCACTCTTAC
TTAACCGTTCCCTACTATAGCACACCTTGACATGTTGACCGATCGATCCCTAGTTACTAGTCCTT
GCTCACCTATGCATACAAAGAGATATAATCAAACTGATGCTTATTATACCACGCCTGTCTTTCTA
TCCGTTACTTGCCTATTAAAGCACTACTTAACTCATCTTAGTTCCAGCACAAGCCTCTTCCCTTC
AATATGCATCCGATCAAAACAACCCTACTCCCCTTCATACGCTCCATACGGAATGCTATAGGGAG
GGGGGCAAGAGAAAATAAAACAGACTGAGCTCACTCCGTGCACTG
Found at i:1409532 original size:22 final size:22
Alignment explanation
Indices: 1409507--1409548 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
1409497 GTGGTAACCC
1409507 TTGACCCTCTTTCATAACTAGG
1 TTGACCCTCTTTCATAACTAGG
*
1409529 TTGACCTTCTTTCATAACTA
1 TTGACCCTCTTTCATAACTA
1409549 ATAGTAGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (22 bp):
TTGACCCTCTTTCATAACTAGG
Left flanking sequence: Indices 1409007 -- 1409506
GAAACGAGCAAGGAATTCTAATACTATTGATAGGACAGATCAGCTTAGCTTACTTTCAACCTTGT
TTCCTCCTTTCATTTAGCATAGCCGCCCCGCCCGAGTAAGAGAGTGATTGTCCTACAGGGTAGTT
AGTGGTCTATTAAAAACACATCTCTATGCAAGATATAATTAAGTGAAGTAAATAGAAAGAAGTGA
AATTTCCACTACTATTTTGTTTGTTTGAGTTCTTAAGCTTGCTTTTTTGAGAAGATTTTAGGGGA
CAGCAAGAAAAGAAGAAAGGAATTCAGTTTATCGAACAGAAAGAGGGAAAGAGAGTTTAGTTTCA
TAAGCAATAAAAGTTGTTCAATCCCCCGTTTCCTAAGCACCAAAAAGTAGTACTTACCTAAGCAC
ACTAAAAGAAAACTTGCAATCATATGCGAGAGAAGGAATAGAATGGGACAGAAGGAATTTGAGTA
GTTCAAAGAAGAATTACGTGTATCCAGTTCAGCAAGTGGTAACCC
Right flanking sequence: Indices 1409549 -- 1410048
ATAGTAGTGCCTTTTGACGTGTAGTTATACTACAGCAAGTAGAGAAGTTTCTCCTCAATTAGTTA
CTTCTTGAGTAGTTTTTGCTTGCCTATGAGTTTAGGCTCACCTCCCAAGCTTATTGAAAGAACTC
GAAGTGTAGTTGTCTACAAATCGAATAAGCAAATCAAGGTCCTTTCCATCTTAGATCGATCAAAG
CCTTCAGAATACGAGTACAAGACAGTAGTAAGGATCAAGAAGTTAGGAAAGTTTGACAGTAGTAA
GTACGAGGGAAATCAATTAGTAGGACAAAAACACGGGGGTTCCTACTTGACTTCACCATTGCTAG
TAGTTACTCGTCTGTGTAGAACAAAAAGCTCTTCCATTCCATTCTTTAGTGAGACAGAGCATTAG
AACGTTTCAGGAGAATAGCAGATCAAGAGAATCTTTTCCTAGCCTGCATAACACAAGGCTAACGT
ATACTTTATGGATGCTTAAGCTTCAGTGGGAAGGCGGCCTAGCAA
Found at i:1414591 original size:6 final size:6
Alignment explanation
Indices: 1414580--1414610 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
1414570 GTTATTTGTT
1414580 ATTATC ATTATC ATTATC ATTATC ATTATC A
1 ATTATC ATTATC ATTATC ATTATC ATTATC A
1414611 GAGCCCTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.00, T:0.48
Consensus pattern (6 bp):
ATTATC
Left flanking sequence: Indices 1414080 -- 1414579
GCCTACTCAATTCTGATTTTTGACTTTCAGTCTATCTGGAAAATACAGTAGATACAACAGCTTAC
TTGGAGTCTGATTTTCTATTGAAAGTCTTCTCGCTGGCTTTCTACTTGGTCAAACTAGGGATACT
ACAAACTACTATAGAAACTACAAACTACTGCCTCCCTGGGAATCTTACCTCTGACTTTCACTCTT
CTTTGCATGCTTCTTTCGTACAACTCAAACTAGGGAAGCGCCAACTGCAAGCGACGAATCCGATT
TCTGTCTTTGAGTCTACTTCCGGCCTTCTAATACCCCCGACTCCGTAAACGGCTACTCACTACTA
CTGGGCAGCTAGCTTTCATTCTTCTTGGTTACAGGATTTCATTCTAATCTAGAGTAAGATTACTC
GTTATTTTATTCTCATAACATCTCACTTGAACTTGTACCTTCTCATCAGAAGGGGATGCATGCCG
GATACCACTAGGCAATTCTATCTATTGGTGGAGTTGTTATTTGTT
Right flanking sequence: Indices 1414611 -- 1415110
GAGCCCTGTTTATCATCTATTTTATCCAATAATGATTCTATTAGTATTTGCGTAGAATCAGATAG
TCCTGGGATAGCATTTAGATGAAAAGGTTTGGTATCTACCCACATACCTTGTTCATTATGAATGC
GTATTCTCTTGGTAGAGTCGGGTAATGTTAGTGTCAATTCAGATTGCTGCTTACGGATAGTGAAT
GCTTTAGAGTTCAATCTGAAGGGGTTTGTCACCACAATCGTTTTTCTTATAGATGGATCTGCATA
TTGGTTAATAAACCAATCTGCGGAAACAGAATCTTTAAGAGCCCCCTTGTGAACAATAATATCTT
CTCCATCAGCATGGAGCCAATAACTTTTAGGAGATAAGAAGATAGCTTCCGTAACGAAATGTTCC
ATTTTCAACTTACTCAACTCCATTGGAGAAACCATGTCTTCAGGTAGTGGCTTACTAAGAACTAT
TGAGTCAGTATCAGTATAGTAACAATCGTCTCTATTTAGAAATGG
Found at i:1417418 original size:41 final size:41
Alignment explanation
Indices: 1417326--1417411 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
1417316 TTAGATCGTG
* **
1417326 TTGCACTGAGTTACATACGTAAGTGTGTGTCAGAGTGTGTT
1 TTGCACTGAGTTACATACGTAAGTGTGTGTCAGAGTATAAT
1417367 TTGCACTGAGTTACATACGTAAGTGTGTGTCAGAGTCATAAT
1 TTGCACTGAGTTACATACGTAAGTGTGTGTCAGAGT-ATAAT
1417409 TTG
1 TTG
1417412 AGTGAGTCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 36 0.88
42 5 0.12
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (41 bp):
TTGCACTGAGTTACATACGTAAGTGTGTGTCAGAGTATAAT
Left flanking sequence: Indices 1416826 -- 1417325
CCTAAGCATATAATACAATTCGTTGAAGAGAGTTTCCTTAAGACATCCAGAAGAATCGCAGGCTT
CTATAGCAGGACCTACAGTGAAATGAACATTAGGTGAGTTAGGCATTTTCACATTAGGTGAGTTA
GACATGAAAGCATCATATGAAATAGTAAGCTTAGCATAGCTATGTATTTTAGGCCTAATATGTTG
AAAAAACGCTCTACAACATGAAATCAAGAAGGTACTACTACTTCCAGCTGTTGGTAGATCAGTTC
CAGTGAAAGTAATTTGAGCTTCAATTAAGCCCTTCGAAGAACGGGTAATACCGCTAGTACTAGAG
CAAGTGCGAAGAGAAATAACCAACCCCCTCCGTGACTTCCCGATCAAAGTAGATGGAGTGTGGTT
AAAAGGAAGGAAGTGAATTACCATGATTTTATTGAAGTCAAAAATCTTGTTCATGTTCATAATTT
TGCGTGCTTTGGCATTATGTTTTGTTTCAATTTAGTTAGATCGTG
Right flanking sequence: Indices 1417412 -- 1417911
AGTGAGTCAAAGTGTATCTGTTAATAAGAGAAAGTGTAATTAGAGCGAGTACTCCTTTTCCTTAT
CCTTCTCCGTCTCCATCTCAATCAGGTTCTCGTTCAGCTTGCATTCAGTGTTCAGGTGGAGGTAC
TTCCGTTCGCTCACTCTCATTCCAGAGTCCTGCAGTTTGTTATTTAATGCCTTGGGTCAAGTGGG
AAGGAAGTATAGAGTTCAGCATTCGTAGTAGTTTTTGGCTGTGTCTTTTCGCCTGGCCAGGTGGT
AGAGTCCAGCTAGATGTATTTATTCCCTTCGGTGTACGTGATATGCGAGGGGCCTTTTTTGCCAG
AGTAGCCGATGACATATTCTTTGGTTGGCATACCTATTATAGGAGTAGGTGTGATGTCGCTCTTC
TTGAAACGCAGACTAGAGGACGTTCTCGGTGCTACTTTTATTTGACTCCATTTAGACTATACGTG
GGATGGATTTTCTGCTTTCGGATGGTGTTATTTCAACGTTGAGTC
Found at i:1423963 original size:16 final size:16
Alignment explanation
Indices: 1423942--1423972 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1423932 GCGACTGTCA
1423942 ATCGAAAGTGTGAACG
1 ATCGAAAGTGTGAACG
1423958 ATCGAAAGTGTGAAC
1 ATCGAAAGTGTGAAC
1423973 TACGTTCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.29, T:0.19
Consensus pattern (16 bp):
ATCGAAAGTGTGAACG
Left flanking sequence: Indices 1423442 -- 1423941
AAAGCAAAGGAAAGGCAAGGAAAGATAGTGCTTATTCTACACGTATTGTTAGTAGTGACCTTCAT
TGCTTATTTGTATTATGAACCAATAGCATTTGCAAACTAGGAAAAGTCCGTGCAAAAAGAAAAAT
ACCAATCAAAGCGTATTTCACGTATTGAACGGAAAAGCTCATCTGTCTTATTGAACTTCAAAGCG
TTAGTATTTCACGTAGTTCACTGATTGTTGTACTGGAAAAAAAAGAGAAAGTCAAAGCTTATTCG
CTTATTCGTATTTGTCTTCTTTTTTGTATCTCAATTCTTCGCAAAATCAAAAGGGAAAGCGCAAT
CTCAAGCAAATATCATGAAAAGCGTATATCAAGTGCTGCGTATTTTACTGATTTATTGTCACTGT
GGTTTTTCTCGTAGATAGTGTAGTTTGTGTGCTGAAAAGCAAACAAGTGAAGCAAGGAAGCAAAT
GAACTTTCAAGCTTGCTTAATCTCTAGTTCAAATAGCGACTGTCA
Right flanking sequence: Indices 1423973 -- 1424472
TACGTTCACTCAACTGACAAGCTTTTAGTGCTTCTTCCTCTTTGAACTGAAAAGCGTATTGAACT
GCAAAGGGCTAATCGAAAGTCAATAAAAGCAAGTGCTGATTGTTGAACTACGTTCACTTCATTGT
TGTCTTCTTTCCCAGCGCAAATATCATGAAAAGCTGATTTTTCTCAATAGAAAGCTAGTGTCATT
AAAAGCTAAAGAGAAAGCAAGGAAAGCTAGTACGTCTTGTTAGTAGTGAACTGCTCCATCTCAAG
AAAGAAAGGATAAAGCGGAAATCCCTAGTACAAATAAATAGCGCAAGGAACCATTAAATAACAAG
TGCTTATTCTCAACCCAGGAATGCTTATTCTAAAACAAGGAAACATTAACGAAAAATATACTGAA
TTCGGAATGTATTTCACGTAGTGAACTGTTTGTTGTGCTTCATTGCCTTCCTCAGTCTTTCAAGC
GTATTGAACAAATGATAATTCATTTTCCTATTTCACGTATTGATT
Found at i:1424338 original size:21 final size:21
Alignment explanation
Indices: 1424298--1424339 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1424288 AAATAACAAG
* * *
1424298 TGCTTATTCTCAACCCAGGAA
1 TGCTTATTCTAAAACAAGGAA
1424319 TGCTTATTCTAAAACAAGGAA
1 TGCTTATTCTAAAACAAGGAA
1424340 ACATTAACGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (21 bp):
TGCTTATTCTAAAACAAGGAA
Left flanking sequence: Indices 1423798 -- 1424297
AGTGCTGCGTATTTTACTGATTTATTGTCACTGTGGTTTTTCTCGTAGATAGTGTAGTTTGTGTG
CTGAAAAGCAAACAAGTGAAGCAAGGAAGCAAATGAACTTTCAAGCTTGCTTAATCTCTAGTTCA
AATAGCGACTGTCAATCGAAAGTGTGAACGATCGAAAGTGTGAACTACGTTCACTCAACTGACAA
GCTTTTAGTGCTTCTTCCTCTTTGAACTGAAAAGCGTATTGAACTGCAAAGGGCTAATCGAAAGT
CAATAAAAGCAAGTGCTGATTGTTGAACTACGTTCACTTCATTGTTGTCTTCTTTCCCAGCGCAA
ATATCATGAAAAGCTGATTTTTCTCAATAGAAAGCTAGTGTCATTAAAAGCTAAAGAGAAAGCAA
GGAAAGCTAGTACGTCTTGTTAGTAGTGAACTGCTCCATCTCAAGAAAGAAAGGATAAAGCGGAA
ATCCCTAGTACAAATAAATAGCGCAAGGAACCATTAAATAACAAG
Right flanking sequence: Indices 1424340 -- 1424839
ACATTAACGAAAAATATACTGAATTCGGAATGTATTTCACGTAGTGAACTGTTTGTTGTGCTTCA
TTGCCTTCCTCAGTCTTTCAAGCGTATTGAACAAATGATAATTCATTTTCCTATTTCACGTATTG
ATTTGCCTCTGTACTTCTTTTCCTAGTTAGTACTCATAGCTTCCTGGGCCGCAGAGAAGGAAACT
TCCCAACTGATCTTTCTTATTCTGCCCTTCCACTCGCCAATTTTCACCATAGTGACACAATGTCA
ATCACTCCAGCCAGCAGAGGAACCTTAATAGCTTCAAAGAAACTAGTAAGTCTGGAACGTTGACC
GGTATTGCATGTTGTACGGGATTCGTTAGCCTCATCATATTGTCCTACGCTCGCTACGATTATTG
CGCGTAGCTTTCCTAGCATGCTACTTTTCTCCGTTCGAAGTTGGCTGAGCTAGGTGCTTTACGGT
TACGGTTAGACACTGAATAGGCGTACCGAGAATTTCCATAAATGT
Found at i:1454995 original size:66 final size:67
Alignment explanation
Indices: 1454922--1455060 Score: 219
Period size: 68 Copynumber: 2.1 Consensus size: 67
1454912 CGCTGATGTA
* * *
1454922 GCGCGCCACTAAGGGAGT-GACGGCCCGGCCCTT-GCCTATTTCTCACCTTATCCGGGTTCCGAT
1 GCGCGCCACTAAGGGAATAG-CGACCCGGCCCTTCGCCCATTTCTCACCTTATCCGGGTTCCGAT
1454985 AAG
65 AAG
1454988 GCGCGCCACTAAGGGAATAGCGACCCGGCCCTTGCGCCCATTTCTCACCTTATCCGGGTTCCGAT
1 GCGCGCCACTAAGGGAATAGCGACCCGGCCCTT-CGCCCATTTCTCACCTTATCCGGGTTCCGAT
1455053 AAG
65 AAG
1455056 GCGCG
1 GCGCG
1455061 TCGCTAAGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
66 29 0.43
67 1 0.01
68 37 0.55
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.21
Consensus pattern (67 bp):
GCGCGCCACTAAGGGAATAGCGACCCGGCCCTTCGCCCATTTCTCACCTTATCCGGGTTCCGATA
AG
Left flanking sequence: Indices 1454422 -- 1454921
AAGTTTTTCAGCGGTAGGCACACTTCTAATCATGCCATCTAAGTCTTCCCAGAATTGCTTTTTGA
TGGTCTCACTAAGCCCGACTTGTGGCGCGTACGCACTAATGACGTTCAAAACTAAGTCCCCAAAA
ACTAGCTTAACTAAGATTATCCTATCCCCTTGTCTCCTAACGTCAACAACTCCGTTCTTAAGGCT
CTTATCGATTAAGATGCCTACTCCATTCCTGCCCCGCTCCTTTCCAGTATACCACAGCTTGAAAC
CGGTATTCTCCACTTCCTTTGCTTTCTGGCCCGTCCATTTAGTCTCTTGCACGCATAAGATATTC
ACACGTCTCCTAATCGCAGTATCAACTAACTCTCTGAACTTTCCTGTTAAAGACCCTACATTCCA
GCTACCTAAACGAATCCTACTCTCTCCGACTAGCTTCCTTGCCCCCCGCACCCGTCGAGTAAAGT
GCGAAGACCCTTGCTTACTTGTCACTACATCCGGGCGCTGATGTA
Right flanking sequence: Indices 1455061 -- 1455560
TCGCTAAGAGGGTTACGCCCCAACGCAAAATGGTTGGGTTTCATTTCCATCAAAATAGCTAAGTT
TTGACGTTGGCTCGCCGGGCCTATCACAACCCTCCTCCTTTTCTCCGGGCTTGCTTGGGACCGGC
TATATTGAAACAACATAGGCGGAGTTTTCTATCCCCTCTACGTAGTCTCTATTTAGTCATCCCAA
GAATGAACTCCCCTTTATTTCAAGGGAGGGATTTCATTAAAACAGATAGACCATAAATGGTCTTC
GCAAGCATACCACTTTCTTTTCAAGAATCGCTAACGCTTTTAAGCGACCCGAAGGCGTAAGCCTA
CTTTGTGGAAAATAACGAGCTAGAATAGAAGGCCTGTGAACATGAATGTGTCGTATCGGGCGGGC
GGTCCACAACTACTGGGTTGGGGTCTTTCTGTGGCTCAAAGGGCGTTACGCTTGTCAAGACGGAA
GTCGTGAAGCTTAAGTTAACGGGTTTTTCCGTTTTCTGTGTTCTT
Found at i:1472109 original size:6 final size:6
Alignment explanation
Indices: 1472098--1472160 Score: 54
Period size: 6 Copynumber: 9.5 Consensus size: 6
1472088 TCATGTTCCA
*
1472098 AAAAAG AAAAAGACG AAAAAG AGAAAAG AAAAGAA ACAAAAG AAAAAG
1 AAAAAG -AAAA-A-G AAAAAG A-AAAAG AAAA-AG A-AAAAG AAAAAG
*
1472146 AAAGAG AAAAAG AAA
1 AAAAAG AAAAAG AAA
1472161 GGCAAGGAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
6 23 0.49
7 15 0.32
8 8 0.17
9 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Left flanking sequence: Indices 1471598 -- 1472097
TGAAAATGACAATGAAAATTCAAGAGAATGATAACATATTGAAAATATGTTCTATAGCCGCAAAC
GTTATAGTCATAGAAAGTACTCCTTTTTTTTTACGACGATTTTGAATAGTTGTACTTTACATTAT
AAGTAATATAAAGTTAGTTGTGCAAGGTGCCGCCACTCGGACTCGAACCGAGACACACAGGGTAC
TGCTTCCTAAGAGCAGCGTGTCTACCAATTTCACCATGGCGGCTTATTCTAAATAATAAGCCAAT
TCATGATCAATCGTCAAGATAGATTCAAACATTCTATTTTGAATAAGAAACCTTAGAATCGATAA
AGAAAAAGAATTGTTTCATCTTAGATTGAAATTTTCAATAAAGTAACTTTTACTTAGGCAAAATC
TGCTTCTTAATATTTTGAATATCAATATTTACCCTTTTTTCGAATTTCACTTATTTTCTGAATCA
ATAATGATACAAATCAAATCCGTTGATTTCTCTTTTCATGTTCCA
Right flanking sequence: Indices 1472161 -- 1472660
GGCAAGGAGACTTCACTACTTATTACTATGATGACACCGAGAGCGAAGATGAGGCGCCTTATGAG
GGTCTTTTCTCAAGAGGGATGTTCGCGGATGAAGACTGCCATGTCAACTTGCGGTCGGGTACCCA
CATTCCCGAAAGGCAAGTGCCAAAGGAAAATGAAAAGGCCAAAGAGAAAGGTAAAGGCCGAGAAG
CAGATGATGAGCCAGGGCCAAGCCAAAGAGCAAAGGAAACCGTGGGATAATACAATCTATTGGCT
CATCTAAGGCGCACTCCCGCACTCATAAGCGTCTTCGAGGCACTTATGATGTCGAAGGAACTTAG
GGAGGTGATGATGGAGGCTTTCAAGAATCCTGAGAAATTTCAGGTCTATCTTGCTGAAAAACACA
TGACTGAGGCTCTCTATGTGGATCCGCCAAGTCAAATTACCTTCACGGAGCAAGATTTGATGATG
GGCACTGCCAACCACAATAAGCCGCTTTACATTACAGGGAAAACC
Found at i:1472131 original size:21 final size:19
Alignment explanation
Indices: 1472098--1472160 Score: 74
Period size: 21 Copynumber: 3.2 Consensus size: 19
1472088 TCATGTTCCA
1472098 AAAAAGAAAAAGACGAAAAAG
1 AAAAAG-AAAAGA-GAAAAAG
*
1472119 AGAAAAGAAAAGAAACAAAAG
1 A-AAAAGAAAAGAGA-AAAAG
1472140 AAAAAG-AAAGAGAAAAAG
1 AAAAAGAAAAGAGAAAAAG
1472158 AAA
1 AAA
1472161 GGCAAGGAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.21
19 6 0.16
20 6 0.16
21 13 0.34
22 5 0.13
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAGAGAAAAAG
Left flanking sequence: Indices 1471598 -- 1472097
TGAAAATGACAATGAAAATTCAAGAGAATGATAACATATTGAAAATATGTTCTATAGCCGCAAAC
GTTATAGTCATAGAAAGTACTCCTTTTTTTTTACGACGATTTTGAATAGTTGTACTTTACATTAT
AAGTAATATAAAGTTAGTTGTGCAAGGTGCCGCCACTCGGACTCGAACCGAGACACACAGGGTAC
TGCTTCCTAAGAGCAGCGTGTCTACCAATTTCACCATGGCGGCTTATTCTAAATAATAAGCCAAT
TCATGATCAATCGTCAAGATAGATTCAAACATTCTATTTTGAATAAGAAACCTTAGAATCGATAA
AGAAAAAGAATTGTTTCATCTTAGATTGAAATTTTCAATAAAGTAACTTTTACTTAGGCAAAATC
TGCTTCTTAATATTTTGAATATCAATATTTACCCTTTTTTCGAATTTCACTTATTTTCTGAATCA
ATAATGATACAAATCAAATCCGTTGATTTCTCTTTTCATGTTCCA
Right flanking sequence: Indices 1472161 -- 1472660
GGCAAGGAGACTTCACTACTTATTACTATGATGACACCGAGAGCGAAGATGAGGCGCCTTATGAG
GGTCTTTTCTCAAGAGGGATGTTCGCGGATGAAGACTGCCATGTCAACTTGCGGTCGGGTACCCA
CATTCCCGAAAGGCAAGTGCCAAAGGAAAATGAAAAGGCCAAAGAGAAAGGTAAAGGCCGAGAAG
CAGATGATGAGCCAGGGCCAAGCCAAAGAGCAAAGGAAACCGTGGGATAATACAATCTATTGGCT
CATCTAAGGCGCACTCCCGCACTCATAAGCGTCTTCGAGGCACTTATGATGTCGAAGGAACTTAG
GGAGGTGATGATGGAGGCTTTCAAGAATCCTGAGAAATTTCAGGTCTATCTTGCTGAAAAACACA
TGACTGAGGCTCTCTATGTGGATCCGCCAAGTCAAATTACCTTCACGGAGCAAGATTTGATGATG
GGCACTGCCAACCACAATAAGCCGCTTTACATTACAGGGAAAACC
Found at i:1472132 original size:27 final size:27
Alignment explanation
Indices: 1472098--1472160 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
1472088 TCATGTTCCA
*
1472098 AAAAAGAAA-AAGACGAAAAAGAGAAAAG
1 AAAAAGAAACAA-AAGAAAAAGA-AAAAG
*
1472126 -AAAAGAAACAAAAGAAAAAGAAAGAG
1 AAAAAGAAACAAAAGAAAAAGAAAAAG
1472152 AAAAAGAAA
1 AAAAAGAAA
1472161 GGCAAGGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 4 0.13
27 25 0.81
28 2 0.06
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (27 bp):
AAAAAGAAACAAAAGAAAAAGAAAAAG
Left flanking sequence: Indices 1471598 -- 1472097
TGAAAATGACAATGAAAATTCAAGAGAATGATAACATATTGAAAATATGTTCTATAGCCGCAAAC
GTTATAGTCATAGAAAGTACTCCTTTTTTTTTACGACGATTTTGAATAGTTGTACTTTACATTAT
AAGTAATATAAAGTTAGTTGTGCAAGGTGCCGCCACTCGGACTCGAACCGAGACACACAGGGTAC
TGCTTCCTAAGAGCAGCGTGTCTACCAATTTCACCATGGCGGCTTATTCTAAATAATAAGCCAAT
TCATGATCAATCGTCAAGATAGATTCAAACATTCTATTTTGAATAAGAAACCTTAGAATCGATAA
AGAAAAAGAATTGTTTCATCTTAGATTGAAATTTTCAATAAAGTAACTTTTACTTAGGCAAAATC
TGCTTCTTAATATTTTGAATATCAATATTTACCCTTTTTTCGAATTTCACTTATTTTCTGAATCA
ATAATGATACAAATCAAATCCGTTGATTTCTCTTTTCATGTTCCA
Right flanking sequence: Indices 1472161 -- 1472660
GGCAAGGAGACTTCACTACTTATTACTATGATGACACCGAGAGCGAAGATGAGGCGCCTTATGAG
GGTCTTTTCTCAAGAGGGATGTTCGCGGATGAAGACTGCCATGTCAACTTGCGGTCGGGTACCCA
CATTCCCGAAAGGCAAGTGCCAAAGGAAAATGAAAAGGCCAAAGAGAAAGGTAAAGGCCGAGAAG
CAGATGATGAGCCAGGGCCAAGCCAAAGAGCAAAGGAAACCGTGGGATAATACAATCTATTGGCT
CATCTAAGGCGCACTCCCGCACTCATAAGCGTCTTCGAGGCACTTATGATGTCGAAGGAACTTAG
GGAGGTGATGATGGAGGCTTTCAAGAATCCTGAGAAATTTCAGGTCTATCTTGCTGAAAAACACA
TGACTGAGGCTCTCTATGTGGATCCGCCAAGTCAAATTACCTTCACGGAGCAAGATTTGATGATG
GGCACTGCCAACCACAATAAGCCGCTTTACATTACAGGGAAAACC
Found at i:1472161 original size:12 final size:11
Alignment explanation
Indices: 1472115--1472161 Score: 55
Period size: 10 Copynumber: 4.4 Consensus size: 11
1472105 AAAAGACGAA
1472115 AAAGAGAAAAG
1 AAAGAGAAAAG
1472126 AAA-AGAAACA-
1 AAAGAGAAA-AG
1472136 AAAGA-AAAAG
1 AAAGAGAAAAG
1472146 AAAGAGAAAAAG
1 AAAGAG-AAAAG
1472158 AAAG
1 AAAG
1472162 GCAAGGAGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
9 1 0.03
10 16 0.52
11 5 0.16
12 9 0.29
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (11 bp):
AAAGAGAAAAG
Left flanking sequence: Indices 1471615 -- 1472114
ATTCAAGAGAATGATAACATATTGAAAATATGTTCTATAGCCGCAAACGTTATAGTCATAGAAAG
TACTCCTTTTTTTTTACGACGATTTTGAATAGTTGTACTTTACATTATAAGTAATATAAAGTTAG
TTGTGCAAGGTGCCGCCACTCGGACTCGAACCGAGACACACAGGGTACTGCTTCCTAAGAGCAGC
GTGTCTACCAATTTCACCATGGCGGCTTATTCTAAATAATAAGCCAATTCATGATCAATCGTCAA
GATAGATTCAAACATTCTATTTTGAATAAGAAACCTTAGAATCGATAAAGAAAAAGAATTGTTTC
ATCTTAGATTGAAATTTTCAATAAAGTAACTTTTACTTAGGCAAAATCTGCTTCTTAATATTTTG
AATATCAATATTTACCCTTTTTTCGAATTTCACTTATTTTCTGAATCAATAATGATACAAATCAA
ATCCGTTGATTTCTCTTTTCATGTTCCAAAAAAGAAAAAGACGAA
Right flanking sequence: Indices 1472162 -- 1472661
GCAAGGAGACTTCACTACTTATTACTATGATGACACCGAGAGCGAAGATGAGGCGCCTTATGAGG
GTCTTTTCTCAAGAGGGATGTTCGCGGATGAAGACTGCCATGTCAACTTGCGGTCGGGTACCCAC
ATTCCCGAAAGGCAAGTGCCAAAGGAAAATGAAAAGGCCAAAGAGAAAGGTAAAGGCCGAGAAGC
AGATGATGAGCCAGGGCCAAGCCAAAGAGCAAAGGAAACCGTGGGATAATACAATCTATTGGCTC
ATCTAAGGCGCACTCCCGCACTCATAAGCGTCTTCGAGGCACTTATGATGTCGAAGGAACTTAGG
GAGGTGATGATGGAGGCTTTCAAGAATCCTGAGAAATTTCAGGTCTATCTTGCTGAAAAACACAT
GACTGAGGCTCTCTATGTGGATCCGCCAAGTCAAATTACCTTCACGGAGCAAGATTTGATGATGG
GCACTGCCAACCACAATAAGCCGCTTTACATTACAGGGAAAACCA
Found at i:1489585 original size:18 final size:18
Alignment explanation
Indices: 1489562--1489597 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1489552 GTATTTGCCC
1489562 AGTGAGTAACTACGTTCG
1 AGTGAGTAACTACGTTCG
*
1489580 AGTGAGTCACTACGTTCG
1 AGTGAGTAACTACGTTCG
1489598 TTACGGAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (18 bp):
AGTGAGTAACTACGTTCG
Left flanking sequence: Indices 1489062 -- 1489561
GTTCGTAACAGACGAGTAACTACTAATGTTACGAGTTCAAAAGGTAGTTACTCACTGGGATAAAA
AGTCCTAAAGGGCATTTTGACTAATACAGCAACACCCTTTTTTTTCCAAAAAGTTATCTCCCCCT
ACCGGTCAAAGTCCTCAAGGCCCTTTTCCCTAAGGAAAGCCATCCTTTTTTGTCAAAAAGTAGTC
GCCCCCTACCGGCAAAAGTCCTACTTTTTTGCACAAAAAGTAGCAATTTCAGTAAAGAAAAGTGA
GGTAGGCCAAAAATACGGGGTTTACTACTTTTTTCAGAAAAGCGTCATCGCGTAGTAGGGAAATC
GGTCGGTAGCCCGAAAATACCGGGTTTCCTAAAAAAAGAGGACGGAGAATTGACTTTTGATACGT
AGGGAACCAGACATATTTACACTTACATTTCAAAACGAATTAGGAATTCAACATACTTTCCCTTG
CATACACCTATTCCACTTACTACTTGTAAATCAATGTATTTGCCC
Right flanking sequence: Indices 1489598 -- 1490097
TTACGGAACCTTTCAGAGAAAAACAATATAACCAAAAAGGACAAAAGAATGAATGACTCCCCTTT
GCTCCGCGCTGGCTTTGGATGTGTGTGGCTTTCTTTGAGGTTCGCTCCTGTTCCGCCCGAACTAC
TGAGCTGAGTCCTTAGTCGTGAGCCCGGCTTTATATGTCCCTGAAAATACGGAGCTCTCTTTTCT
GAACTTTGTAACAAGCGAAGTAGAAAGCAGGAGCTTAAACCACTGCTAAGAAGAGTCGAGTCGCC
TTCTTCTCTATATAGATCAAAAAGATAGATCCGGGCGGTCAAAAGTGGAAATGAAGTAGTGAAAA
TATCACCACTGGAAAAGTCCGGGAAATGCCTGACTCAAACCGCTGGAAGACAGGGATGTGTCAAG
CCGAAATCAAATCAAAAAAGAAAATACCGCCTGCCCGCCCGTATGAAAAACCCCACTTTGCGGAA
CCGTAGAAAAGATTTCATATTAGAAAATAGACTAATGACATCCAT
Found at i:1527461 original size:25 final size:25
Alignment explanation
Indices: 1527427--1527476 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
1527417 CAAATTATAC
1527427 TACTGGAAGTAAGAAATAAGAACTA
1 TACTGGAAGTAAGAAATAAGAACTA
1527452 TACTGGAAGTAAGAAATAAGAACTA
1 TACTGGAAGTAAGAAATAAGAACTA
1527477 GCTCTTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.08, G:0.20, T:0.20
Consensus pattern (25 bp):
TACTGGAAGTAAGAAATAAGAACTA
Left flanking sequence: Indices 1526927 -- 1527426
ACTTTATCAGTTACCACCGAAATCAACAGTTGCCCACAAAAGTGCGGGTCAACAATGACATGGAA
GAATGAGCCTTCCCGGTCTTCAACTCCGTCCATACGATATGGAGCTTTCGAGATAGGAGTCGTGC
CCGGCTGTAGGTCTATGCGGAACTAAATCTCTCGATCTGGAGGGCGGAAGCTCCTCAGGAAACAC
GTCCGGGAACTCTGACACCACAGGGAGCGAGAGCTGGAACGACTTGATATTACACAAGAAAGCCG
CGCCCGACCAAAGAAAGATCATTAAAAAATTGCTTTCAATAGGTTATTTGTGACAGTAGCGATGG
AAGGATATGATCCGTTCAGTCATTTGGTTACCTGACAAAGGACATGGCCTATCTTATAAGTCTAT
CCTCGCGCAATGGTATTTTTTCTAAAAGAAGAAAGTTCACCAACAACAAGTTCCGAGCATCATGT
TCGCTAGAATAAGTACGTATCCCAAAATGAAAATGCAAATTATAC
Right flanking sequence: Indices 1527477 -- 1527976
GCTCTTTCCTTGCAACGGGGCCAGACAGCCGGGGTAGCTCAAGAGTAGCTAGGGCAAAGTAGGCT
TTGGGCAAGAGCCGCTGCCATTGTCATGCGAAGAACCGTCAGAAACACTGTTTATACAGGCCTCC
CTCTTGTTTGTACCATTCACCAGCGGAGCATTGAGATCTTTGATTTTGCTGAGGTTTCGTTCAGT
CAAACTATTTTCTTTTGTATAGTTTGAGGAGATTCTTATCTTTTCTTTATTAAATGCAGCCCCCC
CAGGCAACTCGGCGAAGCTATTTGAGCCAGAGAGGAGGAATTGGCGAAGACCGTGCGAGTCACAA
TGTCGATGTTTTGTGCAATTCGGGCTTCTCCACCATTGCTAGTGCAGACTGAAATGTTCCACCAC
TCCTGAATGCTATCTCCACTATGAGAAGTTTTCATGCCTTTCTTTCTTTTTTCCAATGGATTGTC
CACACTATGCAAGATTTCCCACTGATAACGAATTATTGTTCATCG
Found at i:1536214 original size:38 final size:38
Alignment explanation
Indices: 1536172--1536248 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
1536162 CAATGACTTC
1536172 TCCCGAATATCCAACTGACTTATGAATTCCTTAGAACG
1 TCCCGAATATCCAACTGACTTATGAATTCCTTAGAACG
*
1536210 TCCCGAGTATCCAACTGACTTATGAATTCCTTAGAACG
1 TCCCGAATATCCAACTGACTTATGAATTCCTTAGAACG
1536248 T
1 T
1536249 ACTCTATTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (38 bp):
TCCCGAATATCCAACTGACTTATGAATTCCTTAGAACG
Left flanking sequence: Indices 1535672 -- 1536171
AGTCCTATCTGTTTCACATGAGTGGAAAATCATTCCTTTAGGTGCCTTGAACAGCTCCCAAAATT
GTATTGATTTTCATTCATATTCATATTGGCTTCTCCTCAACGGGACATGTTTCTCGCTATCTTTT
CTTCTTGAGTTTGAGTTGCTAGGTTCATAGCGGCGCATTAATACCTTCCTTAGTTAGCATTCCTG
GTTCTAGTTCGCCACCTTTCTGGATTGATAGCTTTAGCTTTGGGTTTGATGGAGGATGTATCTGT
TAGCAGGTCTCAGCTCAGGAATGTAGGTTTTCCGCTTTGTCAGCATGGTGAGGGCCCATATTGAC
TATCATGAGATCTTTTCTTGTAAAGGTCCGACTCATCTTCTTCCTTTATGCATTATTCCATTCAT
TCCTCCAAAGCGAAAGCAAAACGAGGCTCATCAAAATGCATAGTCTAAGACTACTCAAGGATAAG
ACTAGTAATCAAATAAGAAATCCATTCGAACGATTCAATGACTTC
Right flanking sequence: Indices 1536249 -- 1536748
ACTCTATTTCTCATTGGTGATATAGATAAGCCAGCAACCGTTTTCCAAAAAGAAAAGCAAAAGAA
ATGTTCTCCTCTGAAAGTCTTCGTAGACACCTCTGTCTTAGTCTAGTATGACCGATCCTGTCTAT
CTCCCGGGGTACCATACCATTTCTGTGTGCTTATACTGTTCACGGAAGGTGCCTCTGATACGGAG
AAGTTGACATTAGAGTGTGCATCTTCCCTTAGCATTCCTGTATATTCTTGTGGGCCAGGTTGAGC
TGTGCTTACTCGACTCGAAAGAGCTCTATTTGCCTTGAAACATACAAGTTCTGCAGTTTGCTTTT
CTTGCTTTCATCACTCATTCCGGACTAGAGGGATGGTGCACACGTACAATAAGAGAGAATCCACT
CCTTCCTTTACTAGATGAGTCTCATTCTGGCTTCTCCTACAAGGATGGAAGAGCGGAACGGGTAT
CTTTCTATTTTTTCGTGCATCTAGTTGAGTGGAATATCCCCCTCC
Found at i:1541449 original size:25 final size:25
Alignment explanation
Indices: 1541421--1541470 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
1541411 TTTAGATATA
1541421 TACCAGTCAAGTGCCTCAGATGATG
1 TACCAGTCAAGTGCCTCAGATGATG
*
1541446 TACCAGTCAAGTGCCTCTGATGATG
1 TACCAGTCAAGTGCCTCAGATGATG
1541471 GAGTAAGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
TACCAGTCAAGTGCCTCAGATGATG
Left flanking sequence: Indices 1540921 -- 1541420
TTGAAATGAAAACAAAACACAGGGCGTCCTCGATATATCATATATAGAGTCAAAAGACGAGAAGT
AAGCAAAGCTTTGTCCTTGTGAGATAAGGTTTGAGCGCTAAGTCGAATAAAGACAGAAGGGTATT
TCCTATTTCATAGCACTTGCTAGGTAAGCATGGAATAGCAAGCTACAGGGCATATGTCATGTCAC
GGATAGGCTTAGCATAATGGGTTTGTGCATGTAAAGTCAAAGCATTGGGTCATAGGAAAGCAAGG
AATAGACAGACAGGTACGTCATGGATAGGATTGATAGGATTGAAAGTCTGCAGAGGTGAAAAAGC
AAGGGCTCTTTATTCTCATAAGGCAGTCAAAGCTTTTAATGCCAGGGAATTCTTTTAATGCAAGG
GATCGCATAAGGAGAAAATCTATTAGTAGGTCAGAGATAGATAATATTTTGGAAGCAAGCATGTT
GAATTAGGAAAACGAGACCCCACCAAATTTCAACATTTAGATATA
Right flanking sequence: Indices 1541471 -- 1541970
GAGTAAGATCGTTGATTGGAAGCTAAGTAAGAAATCGCCTAGTTCCAAAAAAGAGGTTCACCTCC
AAAGAAGATGATGCTGCCAAGTTCGATAGTGGTCGTGTCCTGATCAGAAAGAAGATTTCAAGGTT
GTGGCCGCCGAAGCCCTCATCAGTCTAACTACTGAAAACTGGTATCAAGCTTCACACTCCTCTTT
CAGTGTCTATCTTTCCGGTTTGAAGTGTTTAATTAAGTCATAGTATCAGCCCTAACGACACATCT
CCTGATGCTTATGGTTTTGATGCCATTAGGCGCGCAGCGGTCAAAGAAAATAGTCTGCCATTTAC
TAAGCAAGATTGGATGTACCACGTTAGATATTTGGAAATTTCACTGTAAATACATTGACAAGAAT
AAGAAGATTTTTTTTCTTGTTGAGCGTGGTTGTACTATAGCCAAATGTTGAAGGAACTGAGAATT
GAACTCATCTCCTTCTAGGCCCATCATTTGTTTGCTCGCCTTAGC
Found at i:1553661 original size:22 final size:24
Alignment explanation
Indices: 1553633--1553681 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
1553623 ACTCATTTGG
* *
1553633 TAGAATTC-CTTTTAGAGCGAA-A
1 TAGAATTCGCTTTCAAAGCGAAGA
1553655 TAGAATTCGCTTTCAAAGCGAAGA
1 TAGAATTCGCTTTCAAAGCGAAGA
1553679 TAG
1 TAG
1553682 TCCTGTAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 8 0.35
23 11 0.48
24 4 0.17
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (24 bp):
TAGAATTCGCTTTCAAAGCGAAGA
Left flanking sequence: Indices 1553133 -- 1553632
TCCATTGAAAAGGTGCGTTTGCTAAGGCTTATTTGTTGGAAAGCTCTGAAAGCTCTTGCTCCATC
CGGGCCAAATTGGAGCTCTGCATGACGCCTGAGTCCCACCTCTGTGTCTAAGGAATCGCCTTGAG
AAACATAAGGGGCATGGGATGATATTTCATTTTGATCCTCACGCACTCTTCGATCATCATGGAAT
CACGTTGAGAGGTGAGTTATCCACGCGAACGAACTAGCCAAGTGCAAAGTCTTAGCGCGGGCGGG
AACCCATCCACGCGAGGTTATTTATTTAGTCAGACCACCTGGGCGTTGCAACATCAATTTCACAA
TTGGATTCTTTAGTCTTGCGATATGCAAGAAATCTAATGAAAAACAAAGTAGGTTCTCATAGCGC
AGTATCTTATGAAGCTGAAACATCCATCTCTTCAGGCGTCAAGAAGATACTTAGTAGTGTCAAAA
CTTCTGAGGAGTAGGTTCGTAGTTATCCAAGGGGTACTCATTTGG
Right flanking sequence: Indices 1553682 -- 1554181
TCCTGTAGATGTTGAAGTTGAACACGGAGTACTCAAAAGTCAACCAAAGGTAGTGAAAAAAGAGA
AATATTATTTGATAGAAAAGACACTATATGCAGTCTGTACCTTTGACATAGGTATGCTTCTAAGA
AACTTTAATCTACCAATGGTCTGTATGCCAGAACCTTGGAGAAGTACTCACTCGAGGTGAGGGAT
TACTAGCACGTAGTATTGATGATATAACAGGCGGTTATTTCACTGCTAAGTCGGATTATCTAAAT
CGTTATAGTCTGCTAAGTAGTAAAGACTATGCCCTTTTCAAAATTCAACTAAATGAAAAGTACAG
GAAACTTTGTGAAGTAATGAACACATTACAGAATCAAGCAGATGAAATAAAGAGTGATATGTGAG
AAATATTGCATTATAATCGTTCAGATTCATTATGAGCAGTTTTTTGTAGATATAGCATCGGCTTG
GGTATAAGTTCTATCTTCCAGTCTTTCTATACTTCAGAGGTCGGA
Found at i:1556774 original size:16 final size:16
Alignment explanation
Indices: 1556753--1556784 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1556743 CTACAAACTA
*
1556753 CACTAAACAATTACTT
1 CACTAAACAACTACTT
1556769 CACTAAACAACTACTT
1 CACTAAACAACTACTT
1556785 TTTGATTCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (16 bp):
CACTAAACAACTACTT
Left flanking sequence: Indices 1556253 -- 1556752
AAACCTTTTCTTGTGGGTGATATAGAGACACTCCCATGGCAAACCAATGAGGGTGTTATTCATAT
TCCGTACGCTGTTGGTGATGGGTCGGTGAAAAGATCACTCCCTATACTCCTGTCACTACCTACTG
TACAGAATCCTACAAGTCAAATGGTGAATGACATAGAAGTGAAAGCTGAACCCACTACTTTGAGA
GCTAATCCAATGAGGAACGTAGACCTACCTAAATAGGATAAAGAAGAAACACTCTGGAATTACCT
ACTGGTCAATATAAGAAGCTATTGGGACTTCCTTTCTACATCAGCTATACTACTAACTTAATCTA
CTTCTACATCAAGACTAACCTCACCTACCCTGAAGCTATCTCCTTTCAATGCTTTAATAGCCTGT
GCATATTTCCTGATGGATAAAGTGCTTACTTCAGAATACATAAAGAGAACTGACTGAAGAATAAA
TAGAAAGAAAAGAAGAACACAAGCTTCTCTTAGAACTACAAACTA
Right flanking sequence: Indices 1556785 -- 1557284
TTTGATTCCACTCCTTGAATACGGAATTGCATTTCATCATAGCTAGTCTAGTTCTCCTTTTTGCT
TAGGCTCAACCTATTGAACATTGATATTATGTCCCTTCTTTCGCTGTACTTCTACTACTAGCAAC
TACTTGACACTACTGGACAAGCCCTACTATACTATACCATGCATACTATTGCTTGCTAAAGAATA
AGCTTCTCAACAAAGTAAATGAAGCAAGAGACAATAAAACATGATGGTGACGCTTGAAGTAAACT
CCACTGCTATTATAACACGCGAACAAATCAACATTGAACCAACTTTTGAAAATAGTTCCTCTTTG
TCGTGAATTGGTTGATCGTTATCTGCTATTGTTAGAGAGATCAAGTATTTCTCTTTAGGTGTACT
TTTTGTGTTCACAATCATTGGATCTTGTAAACCAAGAGGAGCTACTGGATTGATTTCCTTTCTTT
TCTGTGTGAAATTCATTTGTTATCTAATACGTGTCAAGTTCTAAT
Found at i:1610605 original size:16 final size:16
Alignment explanation
Indices: 1610581--1610611 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1610571 AGTGAACGTA
*
1610581 GTTCGCACTTTCGATC
1 GTTCACACTTTCGATC
1610597 GTTCACACTTTCGAT
1 GTTCACACTTTCGAT
1610612 TGACAGTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.29, G:0.16, T:0.39
Consensus pattern (16 bp):
GTTCACACTTTCGATC
Left flanking sequence: Indices 1610081 -- 1610580
CAATAGATAAGGTGGTGTTTTCTCCCCCCTCTACTTGAATTACGATATATCTTGCCTCCTTGCTT
TCATGCATAGCAGACTAAGACGTTCAAGCTTCAAAGTGATCTCGCTTTACCCCCAAGCACTGACA
TTTAGAAAAGAGTGGAACTCCACCGGATACTTATGAACTCATATCGGAGCAAGGGAGTCGAGTTT
GCTGGATTGGCAAGGAGGTGACAGGGATGTATGTGTTTTTGTTTTATCGTAAATAGTTCAAAATA
TCTATTTGTCTGTTTGTGTTTCATTTGTTCATTAGAATAAGCTGCCCAAAAAGCATAAGTGAAAA
GAACTTGATTTCCTTTGCGCTTGAAAGACTGAGGAATGAGCACGAAGCCCTACACAGCTTTGGCA
GCACTTGCTTAACAATACGCACTTGCTTTTATTGACTTTCGATTAGCCCTTTACAGTTCAATACG
CTTTTCAGTTCAAAGAGGAAGAAGCTTGTCAGTTGAGTGAACGTA
Right flanking sequence: Indices 1610612 -- 1611111
TGACAGTAGTTATTTGAACTAGAGATTAAGCTTGAAAGTGCATTTGCTACAGAGCCAGAAGGGTG
AATTTGAAGTGAGGTTCTCAACTCTTCTCCCCTTTTTTGGAGACCTTTTCGTTTTAGTATGTTGT
CCTCTTCCCAGCCAACTCCGAGGGAGGAGTGAAAAAATTCTTTCCTTCAGTAGGGTGGGCTAGAG
GCTATAAAGAAAAGAGCAATTTCTTTCGCTAACGCCCTTGAAAAAAGGCCTGTTTGATTTGCTCT
TGGTCCAGCCGAGTCAAGGTAAAGGACCATTATCCATCTTGTGATAAAGAAGCCAGCAAGCCAGT
TCTTGAGCTCGTAGTTTCTCTCTTTTCAAACCTTGATGAAGTATCTTATAAATCAACATGTTGCG
AGTTATCTTTCGGACAAGGTAGTTGAACTTCCACGAGGAACCAATGTCACTAGAAATGTGGCAAG
GTAAATCCATTAGGCAACGAATAAGGATTAAGGATGAGTGTCTCA
Found at i:1616745 original size:15 final size:15
Alignment explanation
Indices: 1616725--1616754 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1616715 CACTAGCATT
1616725 AATAGTCAACTAGCA
1 AATAGTCAACTAGCA
1616740 AATAGTCAACTAGCA
1 AATAGTCAACTAGCA
1616755 CTCCAAGCGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (15 bp):
AATAGTCAACTAGCA
Left flanking sequence: Indices 1616225 -- 1616724
ACTAATGTTGCGAACAAAGGACACATTAGTAGTTACTCGTCTGTTACGAACGAAAAGGCCGCTTT
TCCTTCAACCAAGTGATGAACGAGCCCTATAAAACCAGCCTGAATGAGGCCGTAGGTCGAAAGTG
ATGCGCTGGAAAAGCAAGGAACTATTGAAAAGCGACAAAAGTGGAAAACTCAATAATATTATATT
GGTTCAAAAACCGCATGAGTTAGGGAAAGATACTTGTATGTGGCATGAACTACCATTTTCCCAAC
CGAAGCCTAGTTTGTTAGATCTTATTGGTTGGTGCTCGAGGTATGGACATTCTTACTAGGTTAAT
GAAAACCTGTTACCAAGCACTATCTATAATACAAGAGGGTAGGTTCCCATTCCAACATTAGGTTC
ATTTACAGCAAATCCTTTTAGTTCAGCAAAGAAGCAAAAACCTTTTGCACCAAAAAAAGCTACTC
CAACTGTAACCCCTCAAAACACCCTTTGAATAGTACACTAGCATT
Right flanking sequence: Indices 1616755 -- 1617254
CTCCAAGCGCTTATCTGATTAGCAGACTGGTTTTCATGGCAACTCTAATTGCAATTGAAGGAGTA
GGTACCTTACTGAATGTCTAGCCGAGTTGGTTGAGCGTGTGGTGACGAGATCTGTCTTTGATGCT
GCCTTGGCGGATGAGATGGAGTCAATGAAGAAAAATAAGGTTTGGGACTTAGTTTATTTACAGCC
CCGGCTTAATGGGAAAAAGGGTTCTAAAGATTAGTCCATAGTCCCATCTAGTGCCGAACGCTTTT
ACGCTCGCATGGAATTACTTCCTCCACTAGAGTAGGCAGCACTTTTCTTACAAGTAGTCCCCAGT
GTGCGCTAAAGTGATTCCCTAGTTTATAAGTAAGTATTCACTGAAGGGGACTTCTCAAAATGCTG
ATATTGATATTAGGTCGACGGGGAAGAGGAACTGAAAGGAAAGATATACTGCAGGCTGAAAATAT
AGACTGAGTTTTCTACTACAGGCTTGGCTGGAAAGGCTAACTATC
Found at i:1628366 original size:29 final size:29
Alignment explanation
Indices: 1628311--1628367 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
1628301 CTCTGATTCT
*
1628311 AAACTGAACGTATACAGAAATCCGGTTAG
1 AAACTGAACGTATACAGAAATCAGGTTAG
1628340 AAACTGAACGTATACA-AAGATCAGGTTA
1 AAACTGAACGTATACAGAA-ATCAGGTTA
1628368 AAGACATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (29 bp):
AAACTGAACGTATACAGAAATCAGGTTAG
Left flanking sequence: Indices 1627811 -- 1628310
TAACTCAAACCATCATGTCAAACTGGAATTGCCAGTCCACTATCTATTCAGTCTTAGGTTCAACC
ACTCCAAAAGCTATCTAGTTTGTGCTTAAACAACTGATCAATGCCAACGTTGGTTATTCACGGTG
AAAGCAGACAACCTTTTTGAGAGAACTCTTATCCACATTCCAGTTAACCACGTAGTTCCATATTC
CTTATTTGAGTGGGATCAAAACTCCTATATGAGATGGATCCACCTAGCCTTTTCCTGCGCGAGAG
AAACAGCAGTGCTAATGAGCAACAGCTAATATCTTCATCTTCAAAGCTATATTCTAACGAGCTAG
CTTAGTCAACCAAAGTGAAAACAACAAGTAGCGCTCACACTTATCTAAAGACACCCAATATACCA
CCCCCTCATTTCTTCTTCTTCGCTATTTTCTTCTTTTCAGGCACACCTGCCTTAGATTATTACTG
GTTTGATGTATTAATAACAGTACATACTCCAAATACTCTGATTCT
Right flanking sequence: Indices 1628368 -- 1628867
AAGACATAACATAACAAAGAAAGGAAGAGTTGAAATAACGAAAAACATTATCAAGATATAATGAA
GATACTAATCCAACAATATACTATTTAGGAACTAAAGCATTACTTAATTCATAAATAGATGAATG
AGTTAATGCTGCATGAAACTCCAGGTGTTTAGACATCGAATCCCTCCACAGCCTATGTGCTCGCA
GTATGCCATATAGTGAGTGAATAGATCTTCCATCCCCTCATGGAATCTCTTTTTCTCTGCTGACT
TGAATGAATTCGGTAGCTTTAGAATTTCTTCATTTGTAATTTGTGAACGTAGTGAAATACGCTTT
GAAGGGAAAATCAAGTCAATCTACTTATGAAAGCAAGAATCAAGATCAAGAAGAAAGACCTAAAT
AAATAGGAAAAGCATCTCTGTTTCGATACGAGATAGCGGATATCCATGGTCAAAACCTTGTACTC
GTTTCTCTGGGGACTTCCGACTCAATAATTGTGTATACAAGCAAG
Found at i:1635030 original size:15 final size:15
Alignment explanation
Indices: 1635010--1635038 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1635000 GAGTGAAAAA
1635010 GGTAGTTACTCGCTG
1 GGTAGTTACTCGCTG
1635025 GGTAGTTACTCGCT
1 GGTAGTTACTCGCT
1635039 CATGCCTACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.31, T:0.34
Consensus pattern (15 bp):
GGTAGTTACTCGCTG
Left flanking sequence: Indices 1634510 -- 1635009
TCTCCTACGGCAAGGCTCATTCTATGGGCTCTCATTAGTGAGCCTGTATTGAGTAGTGACCTCTG
TTTGCTCGAAAGCCTACGCGCGCACCTCACATTCAGTCTATCTATGATATTAGTTTCCAACCAAA
AAAAAGAATCTATTGCGGCGAGGTGCATAGTATCGTATAGAAAGAAAGATTCGAAGCCAGCGAGC
GAAGGAGCGAGCCAGAACGCGAGTGAATTCACTCAAAGCCCAGAGCCCCTATAGGAAAGCGTCTA
TCTACATCTACGATATTACTTGATTGTCAATATTCTCAAAGAATCGAAGCAAACAAGATTTGGAT
TGAGCCTCACTGCGCGTCGTTGCGCGTTCGCACGCGCATCCGTTTTCTTGCAACGAGTAACTACT
ACTTCTTTTGGTTCTCTTTTGTTAGGAGCAGTGAGCAACTACTAATGTTGCGAACAAAGGACACG
TTCTACGTGTATCTCTCATGCCGTAGTTCCTCACTGAGTGAAAAA
Right flanking sequence: Indices 1635039 -- 1635538
CATGCCTACGTTACTCACTTCGTCACATTAGACGTTCCTCACTTTTGAGAAAAACACTTTGAAAT
TTCACAAGAAGAAAACAAAGAAAACAGGAAACAAGAAGAAAACAGGAATTGAACTGACATTATAT
CATATATGATTGATTTCTTTTTGAGAGAATAGAGCTCGGACACAAGCTTTTGATGCAGTGAGGAA
GTACTAACGTTACGAACCAAAGTCTCACTGGGAGGGAGTGCAACTGTGACAAATAGCAAACATAG
GGTGGGATCCTTTCTTACCCCCTTCTTTCAATCGGTTCACTAATCTATGAAGAGTGAGTTTCTTA
CACCATCGAGAAGTAGGGCTTACTTAGTTCCAACTCTCCTTCTGGGTCGAGGCCACCAACCCCAA
CACTCGTAGTGGCTTATGTGGTCTAGAGCGGGAGAAGGGAATACGACCTAAAAAAGCAAGATGTC
TTTTCTCTTCTTTTCCTCAGCAACGGACTTCTTACCTCAAAACAC
Found at i:1648549 original size:12 final size:12
Alignment explanation
Indices: 1648532--1648556 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1648522 GCTTGCTCCT
1648532 AACAAGCAACGG
1 AACAAGCAACGG
1648544 AACAAGCAACGG
1 AACAAGCAACGG
1648556 A
1 A
1648557 TTGAGCTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.24, T:0.00
Consensus pattern (12 bp):
AACAAGCAACGG
Left flanking sequence: Indices 1648032 -- 1648531
ATTTCTGGCGGATGAGTTTCTACCAATTTGGTCTGGTAATAGAATAGGGCGGCTTGCTTTGACCA
ACACCCCACTTTTTGCTCTGTCCATGGAGCGTATGAATTTCCTGGAATGTAGATAGACCAAAAAA
AGGAATGAAGAGATAGGAATAGGAATTATAGTACCATTGAAAAAAGAGGCACCAGTGGAAACATC
TCTACTAAAAAACCATTGAAATAGTAGGGGTGCTGCCGTGCCACAAGGCACGACCATGGAAGTAA
TGAAAAAGAAGAAGTTCTGTAGTTGTACCATCTGCTCTATCCGTTCTATTTGAGCTTCTCCAAAG
AGGATGAGAGGCTCAAAATGAAAGTGTTCGCAACGCATACCGAAAAACGGGTCCCCATGTTGCAA
TCCGACCATTAATGACTCAAGCCAGTTTCCTAGGCTCGCTCCTGTAGCTCGCTTTTATAGGCGGG
GGGGGGCGGAGGGCGAAGCGTGAATGAACTCTTTGGCTTGCTCCT
Right flanking sequence: Indices 1648557 -- 1649056
TTGAGCTGCACTGCGCGTCGTTGCGCGTTCGCACGCGCATCCGTTTTCTTGCAACGAGTAACTAC
TAATGTGTCCTTTGTTCGCAACATTAGTAGTTGCTCACTGAGTGAGTGAAAAGAGCTCTTTCACT
GATCAAAGGCTTCCGTCGCGGACTGCTCTACATTCAGCCACGCTACAGTGACTTCCGAAGTGCTA
CGGATGGGACGAAATCCGGCAACCAATTGCTGGCTCTTAATAACCAACCCAGCCAGAAGCTCAAT
TCTGCCAGAAAATAACGGGAGGGCAGGGTTGCGCGCGAGCCGAGTGACGTAAGTGCGCAATAGTA
CTTCGCGCCACAAGCATCTCCTTTTTATAGGTTCTACGGACCGACGCCTGCCGCTTCATCTGGTA
GAAAAGAATCATAGATATGCCCGTAATTAGAAGGAAGAACCACCATAAAAATTGTCCTCGTGTAT
CATCTGTAGCAAAACTATGAACGGAAGCTAGCAATCCGGACCGTA
Found at i:1705789 original size:18 final size:18
Alignment explanation
Indices: 1705766--1705801 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1705756 CTAGCCACCC
1705766 AGTGAGTAACTACGTTCG
1 AGTGAGTAACTACGTTCG
*
1705784 AGTGAGTCACTACGTTCG
1 AGTGAGTAACTACGTTCG
1705802 TTACGGAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (18 bp):
AGTGAGTAACTACGTTCG
Left flanking sequence: Indices 1705266 -- 1705765
ATTCTTTTCTACTTGACTACATCATTAGGAAAAAGCAATAACCCATACCTAAGCTTAACTACTTA
ATACTGCCAATTCCTACTGTCCTACTGTACACCTAGAAAAACTCCTTTGAAAATCAATACTAATC
TGAAACAATGACTACTACCTAAGCATAAGCAAGCCATAGTCACAAGCCCTAGTCTGAAGCTTCAA
GTCCAACTCGTATCTCTTAGAGTCCCTACTTTACCTATTTTTGATACTCCCTATTGGAGAGTAAT
TCATATCTCTTTACCTATTCTTCTTCACCGCTTTCCCTTGCCCTACGTTGTGAATGAGAGCTGTG
CCCTATCCTCCTATTCCAATCAAGCAAGAAGTAGTCTTTCTCTATTCCCAAGCCCTCGCATGTTA
ATAAATACGTTGCAATGTAGCCTATTTGTTGACTTTCCCTTTTGAATTGAAACACCATCCCGACA
AAAAAGATTGCCCCCCCTTCCCGAGTTTCGAACGACTAGCCACCC
Right flanking sequence: Indices 1705802 -- 1706301
TTACGGAACCTTTCAGAGAAAAACAATATAACCACCCTGTCGGACAGTTCCACCAAACCAAGGCG
CTTAGCCCCTCCCTATGCCTCTAGGTAAACCACCACTGGCACAAGCAATCCTCTGCCGTACTTTT
CATGATATATTCCACGCTGCAATAACGCACCCTCGGTGCTTAGAGTATATCATGCTGTAAGCTCA
AGCTTGCGGCCAAAGGGAAATTCAATATTATTGATTTTCGTTCACTTGATACTTTTTTGATGTTA
GAAACATGTGGCTTTTAACCTTTTGCTAGTTCAACTTTGCAAAATCCAAAAAGTACCATATCTCC
TTGCTAGCAGCACTCATAATTTACAGTTGATAAGCAAGCTTTGGATCAGAGTCGGTTTAGACCAT
TTGAGTCCTTTGTCAAATTACAACAATGAACTCACTTCGAAAAAGAAAACTTAGAACTAATTGAT
GCATCAAGAAATTGGGACAGACACACACTATTGTAGAAAAACCCA
Found at i:1712272 original size:12 final size:12
Alignment explanation
Indices: 1712255--1712284 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
1712245 GAAACAAAAG
1712255 CAACAAGACAAA
1 CAACAAGACAAA
1712267 CAACAAGACAAA
1 CAACAAGACAAA
1712279 CAACAA
1 CAACAA
1712285 AAACAAGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.67, C:0.27, G:0.07, T:0.00
Consensus pattern (12 bp):
CAACAAGACAAA
Left flanking sequence: Indices 1711755 -- 1712254
AACGAAAGTCAGCTATGACAAATAATCTGCCAAAGGAGGGCTAGCTAGTCTAGTCTAATGATAGG
ATAGCTTCTTCATCGCTAGATTACTGCGCTACTTGCATAAGCTAATTCTACCTTTTAATACTATG
TAAACGAGAGGACACCTTAACACCAATTCTGACTTCTGCCTCTTAATCTGATTCGCTACCAACTC
AAGCAAGCGAAGCGAACCAACCACTCAATCGGCGTTAGCCTAGGACATCTATTAATTCATCGCCT
TTGGTTTACCTTGCCCGTTCGATTCCTCTCTTCCGTAGAGAGAAGAGACTCATCTCACTCGCCCG
CTCGTATTATCTATCCCATAGAGTGAATAGATAACACTCGCTCTACTGAACGGTCGCTCACTACT
CATACCTCGTTCGCTCCCTAGCTGCTACTCGGGCACTACTCATGCCCCGTGCCCTCGGTACGCTC
AATCGGCGCTTGCCTTGGGTATATCACAAGGAAAAGAAACAAAAG
Right flanking sequence: Indices 1712285 -- 1712784
AAACAAGGAACAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCGAACGTTTCTTTTGAAA
CTATTTCTCTTCAGCGAAGCGAGCGTTAGCGGTAAGTAAGGGAAGCTTCTGTATAGGTAATAGAA
GTGGCGTGGATAGACGAAGAAGTTATCTAGTTGGAAGAGAGAGCAGGGGGGGTTTTCGTCGGGGA
TGTTCCGGTATAACTAATCGGATTGCCGTTTGTCTGGGGATCAAAATAGGCGCATGAAGTGAAGA
GGAGAGGTGAGGAATTTGAATGGAAGCACACGGTAATAGATTCTGTATATATTGACAGTTTGACT
ATTTTGATATTTGTTGATGATGTCAATGAAAGAGTGGCTTATTCATGTATTTACTCTTTCCTTTC
AAAAGCGAAAGATCTCAATATTCAAGTTGATCCGGGTACCCTGAATCCGGACCAATCTATTCATT
ATAAGGATTTGGGAACACTAGTTCTTACAGAAGAAGTCATTATTA
Found at i:1731289 original size:31 final size:31
Alignment explanation
Indices: 1731251--1731413 Score: 326
Period size: 31 Copynumber: 5.3 Consensus size: 31
1731241 CACTAGGAGA
1731251 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1731282 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1731313 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1731344 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1731375 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1 AGGAACGAAAAGTAGCTCTACTGATAAGTGG
1731406 AGGAACGA
1 AGGAACGA
1731414 CCGTCAAATC
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 132 1.00
ACGTcount: A:0.39, C:0.13, G:0.29, T:0.18
Consensus pattern (31 bp):
AGGAACGAAAAGTAGCTCTACTGATAAGTGG
Left flanking sequence: Indices 1730751 -- 1731250
GTACCGCCTTCTTTTATTCATTCTTTCGAGAGCGAGGTGCCCCACCTATTCAGTTCGGGAATGCC
TTAGTGAGCGGAGTGCCTTTCGTGAAGCAGTAATAAACTCCTAATCTTCAACCTCCATTTTACTT
TCTTGTGACAAGAAGCAGCTCAGTCAACAGCGAAGTTAACGGACCTGACTACAGACTTTTTCTCT
TAGCTATTAGGTTAGGGATCGGTTTATTTAGCGCCTAAACGCCCCAAGCCAAGCTGCTTCAACCG
AAGGAATGAGAGCAAGCAAGTCCAGGGTTTTTGTGCGAGTCACTGTTTTTCTCCAAGAAAATAGA
TCTTTGATACTAAAAAATGCCCTTGTTTGTTATCTTTCTGCCGGAACAGAGTCGTATTAAAAGGT
AGCTTCCGATAGCTAGATAGATGAGCTATGTGTTTTTTGATCTACACAACCTTCCGTTCTATTAA
GATCGATTGTTGCCGAGGTAGCTATAGAGTCCTCACACTAGGAGA
Right flanking sequence: Indices 1731414 -- 1731913
CCGTCAAATCCACATCCAGCTTGGCAGGTCTTTGGAGTCAAAACTCCAGCCTCAGTTCACAAGAA
ATTGGTTGCCTGGCTTGCAGAGGTATTATAGGTGGTATAGTAAAGGTACAGCTTTTCTGACCGGA
AAACGGTGTTTTGCGGGCCTGACTTTCAGTTTGACTAATGACATAGTCGAGCTTCTTTCTATCGG
GCGAGATACCAAAAGATGATCCCTGCTTTCGTCTTCATCTGCCGGTTTTAACCAACTAGAAATCC
ATACTTTTATGTCAAACCCTGTATACCCACCGCCGTGGAGTCAAAGTCGGATTGATTGCGAGATC
GTCCACTAACGTTGTGATGTCTCGACTTCTCATGATTGGGTCATTATTCTTAAGCATACTGGTTC
AGGTGGAGCGAGTGGGGCCCGGTCGAAGGTCTCTCGCGACCTTGAAATAGTGAAAGCTCAATCCC
AACTGGCCCTAGAGCTATTGCCAGATTGAATTGAAAATGAGCCGC
Found at i:1741445 original size:17 final size:17
Alignment explanation
Indices: 1741423--1741456 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1741413 GGAGGAATGA
1741423 ATACTACTTATGGCTAC
1 ATACTACTTATGGCTAC
*
1741440 ATACTACTTCTGGCTAC
1 ATACTACTTATGGCTAC
1741457 TATGCTATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.35
Consensus pattern (17 bp):
ATACTACTTATGGCTAC
Left flanking sequence: Indices 1740923 -- 1741422
ATGCTTGCTTCTCCTCGACCTACCTCTTCGGTTCACTAATTCTTTTTCCTTCCTCCGCATGCTCT
GTCGTCAACTAGAGCTTTTGGGTGGGCATAGGCTAGCACTGTGATTTAGCCTTGGGTGTGCTTGC
CTAGAAACCGTGAAGTAGTGAAATGCTCCTTTTCACCGGTTTTATTGTCAATTCCTTTTGCCTTT
GCCATACAAATCATTAGGAATACAATAAATGATTGGGCTCTTACTTACCTACTCTACCTAAACTC
ATACTTCCTTTCTCTATGCTTTAAACTAGCATAACAGTCTTTCTTACACAAACTACGGCGCATAA
CAGTTATTCAACTGAACCATCAACTCCTACCTTCTCTCTGATCTACTCCTCCTCTATTCTCTCTA
TGGATACAAACAAAAAGCCAATTAAACCAATTAAGTTATGCCTAAAAAGATAGATAGAATAAAAC
CTCTAAGCTACAATGCTCTCAATCCTACAATGCTGGGAGGAATGA
Right flanking sequence: Indices 1741457 -- 1741956
TATGCTATTCATGGAGCAATACCGATAAAGGTAACGTTAAGCTGTTATCCGATAAAGGAATCGTG
AAGCTTTTCAATGCAATGGGTTTACCTGTCCAAAGCAAAAGCAAGGGTTTAGCTGTCAAGGTAAA
GGTAATTCCTAATGCTCTCCACCAAAGTAAAGCAGGAATGGGCAAGCTGCAGAGGAACCTACAAA
CTCCTAGCCTCTCTTTTCCCTATACAACCTAGAGAAACTCCTCTCTTTACTAGCTAGCCGAACCC
TACTCTCTGGACTTACCAAAAGCAGGAATCTCAAAGCAGAATCTATCTTTTAAGGAAGAATCTAT
GGAAATACGGAATCTATGCTCTACTAATCTTTAGAAGCTAACCACCATTACTATTGTACTTCAAC
CCTAACCTTTACTCTACTTAAACTCTTTAGAGCTCTGGATAGGTAAAGGAATCTCTGCTGAAGAG
GAAACTCCATGGATCAATCAGAGTCAACACCATCCTACTCTGCCA
Found at i:1743633 original size:16 final size:16
Alignment explanation
Indices: 1743608--1743641 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
1743598 AAGAAGAATC
1743608 AACCACAAATAAGCTA
1 AACCACAAATAAGCTA
*
1743624 AACCATAAATAAGCTA
1 AACCACAAATAAGCTA
1743640 AA
1 AA
1743642 ACACTTCGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.59, C:0.21, G:0.06, T:0.15
Consensus pattern (16 bp):
AACCACAAATAAGCTA
Left flanking sequence: Indices 1743108 -- 1743607
TTCATTCCGATACTTCCAGTCGAGTATTTCATTCCTCTTCTACTGCCATGTGGACTCATTTATAT
ATGCTTTACACAGGTCAAGGTGGGGTGACACATAGTGACTTGATAATTAAGGGTTGCCGAAGGCA
AACGCTTTAGGTGAATAAGTAATTGACAAGTAAGAACTGTAAAACACAAGCTCTTCACTTCAGAA
GATCAGAAAGGGAGTCCCATCACTACTACACACTAGTAAAATCCTAGAGCTTCACACCTCACATT
ACATGATGGCTACGACTATGAATCTTCTTGATATGCTTTACTCTCCTTGCTGCCCAAGGACACCG
TTTTGAGCAACAAGAATGGGATTATGAGCGGACGCTATTTCCTATCTTCTCATTTACCTATCCAC
ACTGAGAATCCACTGAGCTCAATTCTGGAATTTAGACAAGTTGAATTCACATCACGGTTTCTGGT
CAATGATAAACACACCCTAATGAAAAGAGATACTTAAGAAGAATC
Right flanking sequence: Indices 1743642 -- 1744141
ACACTTCGAATCGTCTGATATGCTTCACTTTCATGAGCGTGATTTGGCCATCAGTATGATCTGCT
TTAATAGCCTGTTCATATCCACTGATGAGGAGTTCGAAACATACAAATCTACAGACTATAGCCAT
GTCACTAGGTTGCTAGAAGAAGCAGTTGGCTTTCATCATCATTCATTCCAAAAAAGGATAGATGC
AGGGTTAGGGGTCTTTACAAGCAACTAACTGAATTCAAGGGGCCAAAGCATTGGATGAGTGAAGT
GCTGAAAATAGCCAAAGGAGCAAAGAACCCATTCCAATTCGTTGCACTATTTATGCATCTTAGCA
GATGGGCACAAGCACATATTGATTCTAGAAACTTGCCAATTAGTATGGATGCCTCATCAAGCGCT
TATCGGATTATGTCTTACTTTCTATTGAATAAGGAATTAGCCATAAGTCCTAATCTTATTAAAGC
TAGAAGGTTTGATGAGGAAGTCAATGATCTATATACAGATATACT
Found at i:1752752 original size:12 final size:12
Alignment explanation
Indices: 1752735--1752759 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1752725 GGTTGTACGG
1752735 CGTACTTGGTAT
1 CGTACTTGGTAT
1752747 CGTACTTGGTAT
1 CGTACTTGGTAT
1752759 C
1 C
1752760 CATGATGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (12 bp):
CGTACTTGGTAT
Left flanking sequence: Indices 1752235 -- 1752734
ACCATCATTTAGGAAAGAATATTAGTTAAGCAGCTGCTTGGATGGGAGGAGTCTCTGGGGAGCTT
ACTTACTTAGGAGAAGGGGATGCATGGCGCGAGAAAGTCGTTCAAATGGCTCGCGGTGCCCCTTC
CAATTTGTATCATATCTTGTGCATATGGGCGGTTAATCTTATTACGGTGGTAGCTATAGTACCCG
GGCTATAAGTATGGACATAAACTCGTACATCCACTTCATACAGAAGAGAAGAAGACAAAAGAGGA
GTGAGGCTAGAGCAGACCCCAGGGAGGAAGAGCTGCTTGGATCCTTCCCCTTTCGAGAAGTCAAT
TTCTGAAGTTGAGGCTCCGCTCTAATCGATCTTGTTCTTGTGAAGGGCGGGCGATTGACTTCCGA
CGACCTCAGATTGCACCGTTCAGCGCGAAATTGAGTGAGGCAAGTCGGTGATCCAATACCAACGA
TTTCGGCAATACAGGCGTACCGTTTGATCGAGACGGGTTGTACGG
Right flanking sequence: Indices 1752760 -- 1753259
CATGATGCAAGATAAGACGGGCCTTTCGGGGTTGGCATCCATTCCAGTGGTGTCCTAATTTGCAG
ACGTATTCCCCGATACGTTACCGGTTTTTCGCCCTATACGCGAAATTTCTTCTTTTTGTGTGGAA
GTGAATATCAAGTCAAGTTAATGGCAGGAAATGAGAAGCTGGCAGAGTGTGAAGTCAATTCATTC
TCTGTAGTCTTATGAAGAATGGGCTTGATGTATGAATTTATGCATTCTTTTAGGCATTAGCTGGC
ATAGGTACAGAAAAACCACTCTAATAGGAAGAAAGGAAAGTAGGAAAGAAAACTTCATTATAGAA
AGTCTAATAGGCATTGGGACTAAGTAAGATACCCAATAGTGGAAGGAGAAGGAAAGTAGTTTCAA
TAATGATAGCTGAAATGAGGCGAGTGTTAAGCACATTTTGAATGTGGGAAAAGTAGGAAACCCCT
TGTTTTTTTCCTACTTTGTATAAAACCCTCGATGCAATTCGAAAC
Found at i:1756500 original size:22 final size:22
Alignment explanation
Indices: 1756462--1756514 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
1756452 TAAGGAAAGA
*
1756462 CAACTAGCTTAGGAAAGATA-GC
1 CAACTAGC-TAGGAAAGAAACGC
*
1756484 CAACTAGCTAGCTAAAGAAACGC
1 CAACTAGCTAG-GAAAGAAACGC
1756507 C-ACTAGCT
1 CAACTAGCT
1756515 GCTTTGGACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.11
22 21 0.78
23 3 0.11
ACGTcount: A:0.40, C:0.25, G:0.19, T:0.17
Consensus pattern (22 bp):
CAACTAGCTAGGAAAGAAACGC
Left flanking sequence: Indices 1755962 -- 1756461
CTCACACCTGGGTTCGTTCTCTTCCTTAGACAACATCGATTTTCAGGGACATTGGGACTTTTCTC
TTTCTTTTGGGCACCCGTGAGTGAATATCCGAAAGAAAGGTCTGTCATACAAAGATTCACATGCT
CCCCATTTTGGAATTATTAGGTTCAAAGCCGACCAGGTACTTACTCCAAAATCAATGCACTAGTG
AAAAACCCTGTACTTGTGTATCTTGCCCCATCTATAAGAAGAAAGAGAGAAGTCACATCATCGTT
GCGAGCTATCATCATGCCCAATCAAGGAAGCGAAATTCTGCTTATCTAGTATGGCGAGAACGCTT
TCCAATCACTAGTTTAATTGCTTTCAGTAAGTGAGAACCTAGTAAGTAATGGGTTCTTCGGTCAA
TCGCAGTTCTTTCACTTGGTAAGTGTCTTTATCCTATTGGAGTATAGGCCCACATGCCAGGTGCT
ATAAAACTAAGAGTAAGAACCTAGGGTACAGTTTCTAAGGAAAGA
Right flanking sequence: Indices 1756515 -- 1757014
GCTTTGGACTGTGCTTAAGAGAAAGAAGAGAGTAGGCGCGTATAGAAATGGATCTTCTCCAATTA
GTTACATTAACTTCCTTTTCTACTTTCACTAGCTGCTTCTCCAGGCGAATGTTTGCCTTTGGTTT
CACTATCGGACGTTACGCTTGGTCGGCTCACTCTTACCTACCTAATCTGCCTATACTTATTGGTT
GGTCGGCTCGCTCTTTCCGCTTGCTGGCTCGCTCCAGATTCCAGCAGTGGATTCTTCCACTTTAT
CGAGTTCAACTCTGCGTTTTGGCTCGTAAAACTGACGTTACACTCGCAAGCTAGATTATTCCCCG
CCCCGGCAAGAAAGGCGAACTCTTTGAGTTCTAAAGGCTCGGCACTAAATACGAGTTTCTGCCCT
AACTATTACGGACATTTCTTATTTCCTTCGGCCTGTTGTTGTTGATTTGTCCGTATCTTCTTTCC
CAGATTTCCGGACAAATGAGAGGAGAGATGCCCGCGTAGTCGAAA
Found at i:1763176 original size:16 final size:16
Alignment explanation
Indices: 1763155--1763188 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
1763145 AAAAGCAGTC
*
1763155 CTCTAATACATCTCTT
1 CTCTAATACATCTATT
1763171 CTCTAATACATCTATT
1 CTCTAATACATCTATT
1763187 CT
1 CT
1763189 TTTTTTGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.44
Consensus pattern (16 bp):
CTCTAATACATCTATT
Left flanking sequence: Indices 1762655 -- 1763154
TTGGTAATAGGCAATATACGAGCCTGACTTTGAATCTTATTTCCTACTTTTCACCTCCTAAGCTC
AAGTGTGAGAAATTTTTCCTGAGTCAGTTAAGGGTCAAGAGTGTATTATAGGTTCCGAGTGCGTT
GGCGTGATCCAGTTGTTTATGGTTCACCTGTCTCGTCTTGCTGTCCAGTCAGGTATGGTTATACT
GTCTCAGCATCCTAGCTATTCAGTTATTTCTCTATACGATCAAAGCAAAGGTATTGTGTGTGTCG
AGTCCTGTGTAAAGAGAGTATCAGCTAGTATCCGAGCCCGATGCGATTCAATCGCTCCAGGATAG
GGTATAGCCTCATCCATCTATTAGAGGAGGTGTATCCTATCTGACTCAAAACATCCGTCTTTAGG
TCTTTGATTTCCCCACCAGTTCCTGTCAAATGTCATCGTTATTTCGGTTCTTTATAGAAGTCTTT
CTGTTGGACCAAATCAAATCTAGTGAATTACGGGTAAAAGCAGTC
Right flanking sequence: Indices 1763189 -- 1763688
TTTTTTGAATCCAACTAGAAATCAATACATTCCTTCAAGTCAGGACTCTCCCATGGTTGTCCAAC
ATCGAACTAGACTACCTACCCCTATTTTCTATTCTGCACTTCTTCATTTCTGCAAGGACTACATA
GGAAGACCACCCAATTACCCCCGAACCCATAATACGGAAGGAACGGAACCAATAACCCAGGAAAG
ATGTAGAGCACAAAGGCTGGATATATAGAAAATAGGAAAGCGTCTCATCTTTATACATTCCTACA
AAGCTCGCCCTTTTCCACTATTCCAATACCTGGAATTCATCGACCCTGAAAAGAAAGACACCATG
GTGAACTCGGCCCACTCAATCACCCCAGCCAGTTCATTTCGTTGAGGAGGCATCTTCGGCAACTA
CTACATACTATCGATATTGACTTATTTCAATGATGTTGATTTTGATCTTCGGCGCTTCTTACTCT
TTTTCAGGAAGCCTATTCCTGCCCAAGTACTCATTCATGATCAGA
Found at i:1773177 original size:12 final size:13
Alignment explanation
Indices: 1773160--1773188 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
1773150 AACGACCTAT
1773160 GGTAAGTCAAA-A
1 GGTAAGTCAAATA
1773172 GGTAAGTCAAATA
1 GGTAAGTCAAATA
1773185 GGTA
1 GGTA
1773189 TGCCTGGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.45, C:0.07, G:0.28, T:0.21
Consensus pattern (13 bp):
GGTAAGTCAAATA
Left flanking sequence: Indices 1772660 -- 1773159
AGAGCAAGGCAAAGAACTGGTTGGTGGCTTAGTGATCTTGATCTCCGCCATCAAGTCCGAATTGC
GATATGTAAAGAAGTACCAATAGATGTAGCGCTTTTCGAACTTACTTTGGTCAGCAAGCGAGTGA
AAAAAGGAAAAGAGAACATGTAAGGAGGACAGCCGGCGACTCTAACTTCTTGTTATTTCATTCAG
CTGAACAACAAACAATAGTAAGCGAAAATCTCATTCTACGGACGGAGTCGTGAGCCAATCACTTA
TGCTGTATGGGACTTTTTTGATATTTCTAATTGAGCAATGCCCAGCCTGACTTAGGGCCCCTCCC
TGGATGGAAAACCGCGGATACAGAAAGGCGAAGAGAGTCCTTTACACTCAGTGAGTAGGAAGGCA
ATTTAGTCCTTTTTCCCAGTAGTGAATAAAATCGAAGGGATTTCCCCTTTCCAGCTTAGTCCTTT
CGCAAGAGTATCCGCTAGTGGAACCACATCCAGTAAACGACCTAT
Right flanking sequence: Indices 1773189 -- 1773688
TGCCTGGGCAACTGCATCGATCCCATTCCTACTTCACTTGCTTTGGGCGATAACAACCTGTTAGC
TACGGACCTAGCTTTCTTCCCTACTGTGAGCTACCTGTCTTTGAATTCAATTCCAGGGGCTCCGA
AGCACTTATTCTTAACTTCGTTGCCTTGTAGTGTCGTACCCTCCCTATTAGTTCAGTAGCTATCG
TGCCTTCACCCAGTTAGGAAATGAGTTAAGAAAGCGTATTTCACTAGGATGCGATGAATGCATCA
ATTTTGCTTTCGACTTTGCATCTTTCCCCTTCTGGTCTCAGCCCATGGTCTGAGTCAATGAACTA
GTCTCGTACCCTGCTTATGACCAGCCAAAAACAGGTCCTATAGATGCCAACGTTCCGTCCTTTTA
GCCTATTCCCTAGTCTATTATTTTGCTTATTGACCTATCTATTTACAAATTGAAGCGTGAGTGAA
AAGCGCGTATGTATATTGCCTTTTTCGAGTACTCTCGTGTAGGAG
Found at i:1775194 original size:21 final size:21
Alignment explanation
Indices: 1775164--1775205 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1775154 TTTGCAAGAA
1775164 GCTTTAACAGTTTACTTTTAT
1 GCTTTAACAGTTTACTTTTAT
*
1775185 GCTTTTACAGTTTACTTTTAT
1 GCTTTAACAGTTTACTTTTAT
1775206 ATATTATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.14, G:0.10, T:0.55
Consensus pattern (21 bp):
GCTTTAACAGTTTACTTTTAT
Left flanking sequence: Indices 1774664 -- 1775163
CGAAGAACGCGGTCCTGGTAAAAGATACTTACTATAAAGAACCTCTAGCCAAACACCAAAAAAAG
CATCTCCTTTTAGTCCGCTATGTTCACGCAGTTGGAATCCCAGCTGTTGACACACACTATGAACT
AATAAATAATCCATTTGCCCAGCTCCTTTACGCGGTCCTGCCCGAGGCTGCATCAATGGTCAAAC
TTTTGTCTTTCAGAGCTATATAGAATATAGTGGTTTAGCTGAGGCTGAGCACAAAGAAGAAGAAT
TCTTTTGACGAGCTGGGTCTTTTCCATGTTCCGTGGTAGAAGATGTGCTTGATACCTTTCTTTTT
TCTAAGAGGACCACTTAAGGAACCTTACCAAGAGAGGTCACCCAACCCAGAGAGGTTACCCTTGG
TGGCAGACCAGCCGGTCGGTAGTACCGATCTTAGAACCTTTTTGACACTTGTAAGCAAAAATCAA
AAACAATTTGAAATCTTCAACAAGTCCATTTTTTTTTTGCAAGAA
Right flanking sequence: Indices 1775206 -- 1775705
ATATTATACAAATGTTAGCTTGTGCTTACCTTGGAACAAATAAGAGCTTTTTCGCAATCCACAAG
TTTTCCTTTTTACATAGTTCGAAGAAGGTTTTGATGGCCTAGTAAATGTTATTCTTAACTTATCT
TTGTAAACTAATCCAACCTCATCACGAACCAACCAAAAAGGCCAACGGGCTCGGGCGACGAATCC
ATAGTCGACTCCGGGTGGGTAGCAATGCTTGCGGTTGATCCCATTGAAGTAGTTGGAAAGGGGCC
TGGTAGTGAATTCATCCAGTTTTCTAATGTTGCCAACGAGTCAATCGACTGAGAAACTGCCCTGG
ATTTACCGCTGCTTTTTGAGATTGGAGATTCGAAGAATGAAAATGAGATCCAAATCTAGCTAATG
TACCTTGCTACTCCTATACCGTTGCTGGGCGTAGACCTTATCCACCTAGACCGCATGCATCGCTG
CTTTCAGTATTGGGGAAACAATTTCTTACCCATCTAAGTCAACCC
Found at i:1778443 original size:24 final size:24
Alignment explanation
Indices: 1778406--1778464 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
1778396 AGGTAAGTTT
**
1778406 AATAAGTATTAATGAGCCAAGTCA
1 AATAAGTAGAAATGAGCCAAGTCA
**
1778430 AATAAGTAGAAATGAGGGAAGTCA
1 AATAAGTAGAAATGAGCCAAGTCA
*
1778454 AAGAAGTAGAA
1 AATAAGTAGAA
1778465 TTCATCGAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.19
Consensus pattern (24 bp):
AATAAGTAGAAATGAGCCAAGTCA
Left flanking sequence: Indices 1777906 -- 1778405
AGAGCTGAGTGAAAATGGTATTTCTGTTAGACGAATGCAAGACAAATCTCATAATCGTCGTATTA
GGTTAAAGTATCATCGAATCTCGTTGTGTGAGTTTCGTTGCAGATCTCAGTCTTAGTATTTGCCG
TCTAGGATTGTTCCTGGGGTTGTATGATAGTTAAGGTGTTTTAAGGAAGTGTTCACTTTCGTGCC
CCTAGTGGTTATATAGGCCAGCTTAATCGGTTTGATAAGTATCCAAGTCCTCAGTTCGTAAGGGT
CTCATTACCATAGAGTAAATGTCTGTCAAAGGGTAATCGCTGTAAGAAATTAGTTTCTCTCCGTA
TCTCTCTGTTAGTAGGGGTTTCTTCAATTCGAAATCTCGGTTGTGTGTAATGGCTTAGTTAGAAT
AGTTCGCTCAAGTAGTGAACTGTGCATTGAGATGAAGCATAAAGTGAGAATAGTTGTAAACTAAT
CATCGTTGTAGTAGGATGTCTAATAAGTAAGAAAGAGGTAAGTTT
Right flanking sequence: Indices 1778465 -- 1778964
TTCATCGAGATTTTTCAAGTATAATCAAGGGATATTTCTATACCAAGTAGTTTCAGTCTAAATCA
GCGATATTTCTCTCTATGAGAATAAGAAAGAAGTCTGAAGATTCAACCTAATGAGAGTCTCTGCT
ACGGGCCATTATTGTCAAGTGCATTATAGTCACTCAGCTGAAAGACTTTTTCTAGATCGCGAGAC
CGCCCGAAGGAAGGTTCCAACCATATAGTTACTATTTCCCCCTGATTGCTCTGTAAGAAAGGTGG
AAAAAGGAATCTCAATGTATATCTGTATCTGGATCAAAGTATGTCTATTGTTTATCCGATTGTGT
GGTGAGTCGTCTGTGTATGTGATAGGTCAGCCTAGGTAGTATTGGTGTCTTGGGGAGTGAAGGTG
TAGATAAGTGCCGCGCTGAGCTTATATAGCTTAGTCTGTCCGTCCACCGCGATGAGAGTAGGCAA
TCCCCCTTAGATTTGTGCATTCGCTTCAGTCTCTGTAAGAGATTT
Found at i:1791551 original size:22 final size:22
Alignment explanation
Indices: 1791526--1791571 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
1791516 TTAGCTGTTC
*
1791526 ATCTATAGCACTTACTGCTCTT
1 ATCTATAGAACTTACTGCTCTT
*
1791548 ATCTATGGAACTTACTGCTCTT
1 ATCTATAGAACTTACTGCTCTT
1791570 AT
1 AT
1791572 AGTAAAAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (22 bp):
ATCTATAGAACTTACTGCTCTT
Left flanking sequence: Indices 1791026 -- 1791525
AGGCGAGGTGTTTTCCGCAAGGAAAGTCGTCGAAGTACGAAACGACTCCTTCTTCTATTATATTC
TATATATGTCATTTTCACTAGATATACTTTCCAAATCCAAATCAATAGTAGACCGCACTGTTCAA
GTTAGTGACACCCGACTTGCTTCATTGCACTACGCAACCCTCTCGAGCGCACTACTGGCAATTGC
ACTTCCAACTTATTTGCTTGCTTAACCAAGTACGAATGTTCCTTCACGTGTTCATACCTACTACT
GCCTCTTCCACTATGCGGATTGCTTTCTCGAACCAAAGGTGTTGAATCAGTTGCAATCAGGATGA
AGCTAACAACACATGCGAGCTTTATCGTATAAACGATAGACTTTACTTTACCTATCACTGGTTCC
TTGTTGACTAAGCCAGGTGCGAAGCAAAGGTAAACTCGGTCTCGATCCCTAACTTCATGCCTTGG
TTCCAAACCCACAGGAGCTAAGCGCTTCAAATATCTTAGCTGTTC
Right flanking sequence: Indices 1791572 -- 1792071
AGTAAAAGGACTTTGAGCTGAAAGAAGGATCTCCGCATAAAAGCAGTATAAGTCAGGTAATTATA
GCAATGCTATTCGTGAATTCAATAGTAGAATGAAAAAGCAGGGCGCACGCCAGGGTAGCAAATGA
AGAATTCATAGAAAAGAGTTCGAATCCTCTACGAATAAGAAAGGAATTCCGCAGGGTTGAGGTGA
GGGTAGTGAGTTAGATATTAGACTGATCAATCGCCGGGTGTGCTCGTTGGAGATTCTTCTGCTTA
ACACATGTCGAACCTTCGTTATCTCCAGTAGCTTGTGTGTTTTGATCATATAATAATATATAGAG
TTAGTTCTTTTTTCTTTGATCTACTCTTTTTTTAGTGCATTCGCTCATCGACTTCCTTGGTCACA
TCATTTCGGCAGGGTCTGTCGTCCTCCTTCTTACTTTAGAGTAGAGCCATCTGTCATTCCTCTCA
TTGGCAGTATGGAGTGAGTTGCGTAAGTAAGTTTCCTAGCAGCGG
Found at i:1819373 original size:22 final size:22
Alignment explanation
Indices: 1819345--1819387 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
1819335 TGCTTGCTAT
1819345 CCGCTACACAGGCATATGAAAC
1 CCGCTACACAGGCATATGAAAC
**
1819367 CCGCTACACAGGGGTATGAAA
1 CCGCTACACAGGCATATGAAA
1819388 TTCCGTGCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.28, G:0.23, T:0.14
Consensus pattern (22 bp):
CCGCTACACAGGCATATGAAAC
Left flanking sequence: Indices 1818845 -- 1819344
CGAGTAAGTAACTACGTCTCCTAATAACTCGTAACTGCCTACACGTTACTTGTCCGAGTGAAAAG
CAGGGATTCCGCGAGAAAAGGTGAGAATGCGAATTAGAGCTCTGAGAGGAAGGGAAATCTATACA
ATTATTTTCGGGCTAGCGTACGTAGCGAGCGGTCAAACAACTCAAAGTGGAGGATCACGCCTTTC
TCTTAATTCTTGGAAAAAGCAACTCTGGTATCTCGCACTGAGCCGAGTCGAGGAAAAAGAACTCT
TAGACCCGCATCCCAGCCCCTTCAACCCCCAGGATTTTCATTCTATTTTCCAAGCCAAGCCGCCC
GGTTATTAAATCTATGCGAAACAAAATCCCCGTATACACTACCTTCCTTGATAAAACCTGAATTT
ACTAGAAAACAAAACTAGAGCCGTTCACTAAACGAACATTTGACATATGTTCGAGAAACGACTCA
ATCCATTGCACAAGTATGCTATTTCAATAAGTCCATGCTTGCTAT
Right flanking sequence: Indices 1819388 -- 1819887
TTCCGTGCCGTTTGATGAAAAGAAAAGAAAGTGCCCCACCCCACCCTTGTACGAGTTGATTCAAA
AACGCTTTGCTGCTCGGTAATCGATGTCAGGAGCGAAGATAAGAGAGAGATAAGGTGCAAGATAT
GATATCGATAACATACTCAGACTAGCACAGGTTTCTAAAATACCCGAACAACAACTATTCCAAGA
AAAGCGTTCTCGGGTTCAATTCATAATCAATAATTTCCCTTCCTTGTAAGAACACAAAAAACTAT
TATCAGGTCACTCCGTTCCTGGGTTAGGTCGCAAGCCCCGGCTCAGTTCTCCGTTCACTCTCTCT
GATGGCGCTTTCTTCTTCCCTTCCAACCCCACTTGGTATAGAAAACCCCCTCTGCATTTCGTACG
TAGACTCGACTTCGCAGATTCCATCTCCTATCCCAAAAGAGGTCCTCTTTTGCATGATTCGGCGT
ATTCGATGACTGCAGATGTAGGTAGTACTATATCTTCGGGATCGT
Found at i:1829817 original size:27 final size:27
Alignment explanation
Indices: 1829779--1829833 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
1829769 GCCTTTATGC
1829779 CCATTATGGATCTTCACTCTAAGTAAG
1 CCATTATGGATCTTCACTCTAAGTAAG
*
1829806 CCATTATGGATCTTCATTCTAAGTAAG
1 CCATTATGGATCTTCACTCTAAGTAAG
1829833 C
1 C
1829834 AGGGGCTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (27 bp):
CCATTATGGATCTTCACTCTAAGTAAG
Left flanking sequence: Indices 1829279 -- 1829778
TTTCAGAATGCATATCTCGTGTCTCCCGTGACAACTACTACTATTTATTAGTTACACATCTCTTT
TATACCTATTCGGTTATATCAAAAAAGCCTATTTGGCAAAAATAGAACCTATCCTGTTTATGCTT
TTCCTATCCCGTGATGACCTTCATAACCAATATATATTTTCTACCGCTGTGCGCCTTGCTTTGTA
CGATTACTTACTACTAATATACTCGCTGCTTGAGGCAAACCTATCTCTCCTATCTCCGTTATTCC
AGGCATACTGTGACTCAACGTTGACTCAACGCTCCTGCTTCTTTCTAAACACCACCGATGATGTC
TATCAGCTATTCCGAGTTGTGTTTGATTTTCGACTTCCCTACTTCGCTTCGCGCCTTGATTCTTA
TCCCCGCGAAAGCTTTTCTCTTTTTTATAGAAAGTAGCCATGGTTGCTTTCTTTCATTGGTAAAG
AAGGATCTCTCTCTCGTTCTGTGGTCTTGTGGCAAGCCTTTATGC
Right flanking sequence: Indices 1829834 -- 1830333
AGGGGCTTAGCTAGAGTGGGGGGATACAAGTTCGAATACCTTTTGAGATGTGGGAAAAAAGGTTG
AGCACTGAGAGACTGGTCCAGGAGTTTAGGGGTGGCTTGAACCGTCCAACAATGGGAAACTTCCT
CGGGCTACTCAATAAACACGTTGAAGCCTACCTACACACAGCTTTCCAATATCCATTATCGAAAA
AGCAAGTAGTCCTTTCATCCTTTTTTTTTCAGTGCTTTGTGTTTTGAAGAAGTTCGCTATTATAT
GTCATATGTTAGACTGCAATATGTTGTCTGATATCGTATAGTGAATGAATATTGTTTGTTTTATT
CCTTATACTGTAAAGCGAATGACTGTTATTACTTTTTAGTTTGAGTATGAACAGGATGTCATGTG
TCGTATGCTTGGAATTTCTTTAGTATGAGCATGCCTTTGAGCAGGTAGGTAGAAACACCTCCTAC
GGGAGCTATGAACACCATCAAATGCGGGGAAAAACGAAACAGAAC
Found at i:1838386 original size:15 final size:15
Alignment explanation
Indices: 1838362--1838391 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1838352 AGGTCACAGC
1838362 GAAAGAAACATAAAG
1 GAAAGAAACATAAAG
*
1838377 GAAAGTAACATAAAG
1 GAAAGAAACATAAAG
1838392 TATTCAATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.20, T:0.10
Consensus pattern (15 bp):
GAAAGAAACATAAAG
Left flanking sequence: Indices 1837862 -- 1838361
AAAGCCAAGATCGATGCGCAAGAGGAGGGGACCCCTCTGGAAGAATCTACTTCATAGGATGAGAT
TTAGGAGAATCTAAAGAAGCTAAAGATGCACCATGTAATGAACTCCTTACCTTAAAGAAGCTTGA
CCCAGAGCTAGATCAACTCCTGCGGATTCCATCCCCAGAATTCACTTTTACCAGCCCCTTTTCAC
AAACAGACTCGGCGGAACTGCTTTGAACCCGCACACACAAGCAACCAACTATTCTCAACTAGAAA
AGTCGTCTAGTTGCACGTTCCGTAGTAACGGATTTGAGCTGCTTATCTACTTCTATACCTCGAAC
CTTGGCTCCAACACTTTCCCACCCGTGTCAAAGAAACGTACCTTCGACGAAGCCATTGCTCAAAT
TCTGCTTCTTGCTAGGCGTAGGACTACCTTTCTCGAAATGGGTGTTTGACTATCGAGATGCTCCC
CATTTCAGACCTAACCTCACTCCTTCACAAAAAAAAGGTCACAGC
Right flanking sequence: Indices 1838392 -- 1838891
TATTCAATTCCGTAGCTGGTGCTTGTTCAGAAGCAGACCTTTTTACTAAAGCTTTAGGCGAGCCC
GGCCCTTCCTTGACTAATGTGTCAATATATTACAATAAACAAGTAAAGGTTCAAACCGAATTTTC
ATATAGATAAATTGACTGTCCACCCACCGAGGAAACGTATGCTGCTGCTGCAAGCGATACACTCA
AAACTAAAGCAAGTTGGCTTTCATTTGATCCATTCGCTGTGGCAGGAAAGAAAACGGATGCAGTA
AGTAAGCGAGTTACTACATTCGGAAGAGGCATGTTCACTTTAGTCTCCTCAAATTAGGTTAGAGG
CAAGTAACCTTTATTGTGTAGAGCCAGAAAAGCCAGTCGATTCGTAGCTTTTTCATTGTGCCTGC
AAAAAACAGCATTCATCACACACCAAGGTAGGTCATTATGAGTTTGGAAGTGATGCCTTCCTAAC
TAATGCTCGCTCCTGCCGCTTCCCAGGGATGAAGCGGGCGGTGCA
Found at i:1853604 original size:15 final size:15
Alignment explanation
Indices: 1853581--1853610 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1853571 ATATCTATTC
1853581 ACTAAATAGACTACT
1 ACTAAATAGACTACT
*
1853596 ACTAGATAGACTACT
1 ACTAAATAGACTACT
1853611 CAAAAGAGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (15 bp):
ACTAAATAGACTACT
Left flanking sequence: Indices 1853081 -- 1853580
ATGAAATACTTGCTTCCTCCCATTGACTCAACCTCCATTCGTCCGCATAAATCAGTGTGCACCAA
CTCAAGCACCTTTTTTTCACGCATTGCCGGATCTTTAGGAAATGGCAGCTTGGATTGCTTACCAT
AAACACAACCCTCACATAACCCGATGTCATCTATGTCTGGTAAACCAATTACCATCTTCTTTTGA
TTAAGCAACTTCAATCCATTCACATTAAGGTGTCCATACCTTAAGTGCCATAACTCATTTGGACT
GGCCTCCTCTACAGACTTTCCGTTTTGCTCGCTATTGTCCTGCTTTGTTTATTGATTTGAACCAG
CGGTCTCGACTGGATTCGCCCGTTTCTTTTTATAGGTTCGTGTATCAATTCAATCGTTCCACTAT
AAGCATTAGTAACTGATTGTATATAGTTTAGCAATTCAATATTTCCATATAGTGGAAAATCCCAT
ATCCATATATATGTTCAACTAGCTCCAATATCAACATATCTATTC
Right flanking sequence: Indices 1853611 -- 1854110
CAAAAGAGAGTTGCTGAAATGAGTGGAACTACTGCTATTTACTACTACAGCTAGCAATATTACTT
TCGGTATGTCACTACACGAGGAAAATCAACTAGTTTATCCATTCGTAACATCAATTCACTACAAG
AACAGTAAGCAAACCTCGCTATAAATGAAGTAAGACACTCACCCCCGTACTCCATGCCTTTGACC
CGAAACACCACTTAGGGATAAAGGAGAAAATGAGCACTCTTGTAGTAGCTTTTATCTTCCAAATG
AATTGCCCTAATATAAGTAGGAATGCTTGGTAGAGTGGTGCGGGCAGGGTATGCTGATAAGGTTG
TGAAGCATTTTTTCTTGTTCCAGCGCCAAGCAATGGAGTCCAAACAATCAGCAAACGGTGGTGCC
AGTTGTTGAATTTGAGAGAGACGGTTCCATTCATTTTCTGCCTGAAGAGAGATGTCTGTTGTCTC
GGGGCTTGATGTCCGTCCCAGTAGCCGTTGTGGAACACTGAAGAG
Found at i:1858313 original size:21 final size:21
Alignment explanation
Indices: 1858249--1858321 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
1858239 CCTCTTCGTA
* * *
1858249 TTCGTAAACCCAAGCAACCTC
1 TTCGTAAATCCAAACAACCTT
* * * *
1858270 TTGGTAAATTCAATA-ATCTTT
1 TTCGTAAATCCAA-ACAACCTT
1858291 TTCGTAAATCCAAACAACCTT
1 TTCGTAAATCCAAACAACCTT
1858312 TTCGTAAATC
1 TTCGTAAATC
1858322 TCGTTTACGG
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
20 1 0.03
21 38 0.97
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.33
Consensus pattern (21 bp):
TTCGTAAATCCAAACAACCTT
Left flanking sequence: Indices 1857749 -- 1858248
GAGTCAGAGTTTTTTTGGAATGTACTAGTTGTGTTCAAAGAAATGACAAGAAAAAATCAATGGTC
TAGATATATTACTCAAAAAAATCGTTCCAATACACCCAGTGTATTAGAATTGAGACAATTTGGTC
GCTATTGTAACAAACATACAACTCATAGGGAAATCAAGATATAGATCAAAGGAAACTCACATCAT
ATCTTCGATCTTTGCAAGCAATACACAAAGTAAGAACTTCACCATATTTCTAGATTAAATAATAG
TAAAGAATATCTATGAATCAAACCTAATCTCATTTTCGTGTGGAGATTCTCTCATGGGTATAGAT
ATATAATAGATATATGAAATAATCAAACGATATCTGAATGATATCTGATAGATGAATGAAATAAT
CAAATGATATATGAATCAAAACCTATTTTGGTTGGATCTGAAATGAATCAATAAATCGAATTTTC
GAGATAAGGAATAAACCATGGATAAACTCGAGCAACCTCTTCGTA
Right flanking sequence: Indices 1858322 -- 1858821
TCGTTTACGGAAAATTTCTCAAGATATTCCTCTTCGTCAATACCTTTTTCTTCGTCGTGAATTTG
AATTTCGCCGTAAATCTTCTAGATATTCTAAATACCGTATTCGTATTCGTAAGCGATTTTCTCGT
AGTAAACGTTTCTTCATTAGATCAAGGAATCAAATCCATTAGAAAAATCTACGTTTAATTAGTCG
ATTTATTGGTTTCCAAGGAAAAATCATACCTAGACGAGTTACTAAATTAACCTTAAGACAACAAC
GACTAATGACTACTGCTATAAAAAAAGCTCGTATTTTATGTTTCTTACCTTTTCTTAACAATGAG
ATATATTTTAGGAGACGCTGGCGACAGATCTTAAAACGTCGTCGTCAAAATCAAGATAAAAGAAG
ATCAAGAAAAACTCGTCCTAAAACCAAACCAAGAAGGATTCATCCTAAAACCGAACCAAGAAGGA
TTCATCCTAAAACCGAAACGGGAACGATTCATCCTAAAACCGAAA
Found at i:1858744 original size:27 final size:27
Alignment explanation
Indices: 1858714--1858795 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
1858704 AAAAGAAGAT
*
1858714 CAAGAAAAACTCGTCCTAAAACCAAAC
1 CAAGAAAAACTCATCCTAAAACCAAAC
** * *
1858741 CAAGAAGGATTCATCCTAAAACCGAAC
1 CAAGAAAAACTCATCCTAAAACCAAAC
** *
1858768 CAAGAAGGATTCATCCTAAAACCGAAAC
1 CAAGAAAAACTCATCCTAAAACC-AAAC
1858796 GGGAACGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 45 0.94
28 3 0.06
ACGTcount: A:0.48, C:0.27, G:0.12, T:0.13
Consensus pattern (27 bp):
CAAGAAAAACTCATCCTAAAACCAAAC
Left flanking sequence: Indices 1858214 -- 1858713
ATAAACCATGGATAAACTCGAGCAACCTCTTCGTATTCGTAAACCCAAGCAACCTCTTGGTAAAT
TCAATAATCTTTTTCGTAAATCCAAACAACCTTTTCGTAAATCTCGTTTACGGAAAATTTCTCAA
GATATTCCTCTTCGTCAATACCTTTTTCTTCGTCGTGAATTTGAATTTCGCCGTAAATCTTCTAG
ATATTCTAAATACCGTATTCGTATTCGTAAGCGATTTTCTCGTAGTAAACGTTTCTTCATTAGAT
CAAGGAATCAAATCCATTAGAAAAATCTACGTTTAATTAGTCGATTTATTGGTTTCCAAGGAAAA
ATCATACCTAGACGAGTTACTAAATTAACCTTAAGACAACAACGACTAATGACTACTGCTATAAA
AAAAGCTCGTATTTTATGTTTCTTACCTTTTCTTAACAATGAGATATATTTTAGGAGACGCTGGC
GACAGATCTTAAAACGTCGTCGTCAAAATCAAGATAAAAGAAGAT
Right flanking sequence: Indices 1858796 -- 1859295
GGGAACGATTCATCCTAAAACCGAAACGGGAACGATTCATCCTAAAACCGAAACGGGAACTACTC
GTCCTAAAAACAAACCAAGAACTACTCGTCCTAAAACCATAAATCCATAAGCATACTTCCCAATT
GACTGAAAATCCCAAATTGGAATTCAAGCTAAAATGCAGATTTTTTTGGAAAAAGCTTAGAAAAC
TGGTTGGATTCTTGTGTTTTCAAAAAAGGAAAAATAATCTTTTGATTCAAAGATGCTCTTAATTG
CTACTATTAATCTTTATCTGAATGGATTTTCCTTTTATATCTTCCCGGAGTTCATTCTCCGGGGA
ATCCTTTTTTCATCATTATTAATAGATTATTTTAGTATTTCCTCGTTTACCTTATTAGGTTTAAT
GATTTTATAAGAAATCTTGGAAAGACCGATCTTATTTGATATTGCTATTTGAGAAAGTATTTGAC
GATTCAAAACAGATTGCTTCTTGTACAGATTGTGGATAAATTGAG
Found at i:1858772 original size:54 final size:54
Alignment explanation
Indices: 1858714--1858898 Score: 147
Period size: 54 Copynumber: 3.4 Consensus size: 54
1858704 AAAAGAAGAT
* *
1858714 CAAGAAAAACTCGTCCTAAAACC-AAACCAAGAAGGATTCATCCTAAAACCGAAC
1 CAAGAAAAACTCATCCTAAAACCGAAA-CAAGAACGATTCATCCTAAAACCGAAC
** * ** *
1858768 CAAGAAGGATTCATCCTAAAACCGAAACGGGAACGATTCATCCTAAAACCGAAA
1 CAAGAAAAACTCATCCTAAAACCGAAACAAGAACGATTCATCCTAAAACCGAAC
** ** * ** * * * * *
1858822 CGGGAACGATTCATCCTAAAACCGAAACGGGAACTACTCGTCCTAAAAACAAAC
1 CAAGAAAAACTCATCCTAAAACCGAAACAAGAACGATTCATCCTAAAACCGAAC
** *
1858876 CAAGAACTACTCGTCCTAAAACC
1 CAAGAAAAACTCATCCTAAAACC
1858899 ATAAATCCAT
Statistics
Matches: 108, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
54 105 0.97
55 3 0.03
ACGTcount: A:0.44, C:0.28, G:0.14, T:0.15
Consensus pattern (54 bp):
CAAGAAAAACTCATCCTAAAACCGAAACAAGAACGATTCATCCTAAAACCGAAC
Left flanking sequence: Indices 1858214 -- 1858713
ATAAACCATGGATAAACTCGAGCAACCTCTTCGTATTCGTAAACCCAAGCAACCTCTTGGTAAAT
TCAATAATCTTTTTCGTAAATCCAAACAACCTTTTCGTAAATCTCGTTTACGGAAAATTTCTCAA
GATATTCCTCTTCGTCAATACCTTTTTCTTCGTCGTGAATTTGAATTTCGCCGTAAATCTTCTAG
ATATTCTAAATACCGTATTCGTATTCGTAAGCGATTTTCTCGTAGTAAACGTTTCTTCATTAGAT
CAAGGAATCAAATCCATTAGAAAAATCTACGTTTAATTAGTCGATTTATTGGTTTCCAAGGAAAA
ATCATACCTAGACGAGTTACTAAATTAACCTTAAGACAACAACGACTAATGACTACTGCTATAAA
AAAAGCTCGTATTTTATGTTTCTTACCTTTTCTTAACAATGAGATATATTTTAGGAGACGCTGGC
GACAGATCTTAAAACGTCGTCGTCAAAATCAAGATAAAAGAAGAT
Right flanking sequence: Indices 1858899 -- 1859398
ATAAATCCATAAGCATACTTCCCAATTGACTGAAAATCCCAAATTGGAATTCAAGCTAAAATGCA
GATTTTTTTGGAAAAAGCTTAGAAAACTGGTTGGATTCTTGTGTTTTCAAAAAAGGAAAAATAAT
CTTTTGATTCAAAGATGCTCTTAATTGCTACTATTAATCTTTATCTGAATGGATTTTCCTTTTAT
ATCTTCCCGGAGTTCATTCTCCGGGGAATCCTTTTTTCATCATTATTAATAGATTATTTTAGTAT
TTCCTCGTTTACCTTATTAGGTTTAATGATTTTATAAGAAATCTTGGAAAGACCGATCTTATTTG
ATATTGCTATTTGAGAAAGTATTTGACGATTCAAAACAGATTGCTTCTTGTACAGATTGTGGATA
AATTGAGAATAACTATCAAATATTTGGTTTTCACGAGTTACTGCATTTATTCGAGTGATCCACAA
ACGGCGAAAATATCTCTTTTTCCTTCCTCTATCTCGATAAGAGTA
Found at i:1858805 original size:27 final size:27
Alignment explanation
Indices: 1858748--1858869 Score: 181
Period size: 27 Copynumber: 4.5 Consensus size: 27
1858738 AACCAAGAAG
* ** *
1858748 GATTCATCCTAAAACCGAACCAAGAAG
1 GATTCATCCTAAAACCGAAACGGGAAC
1858775 GATTCATCCTAAAACCGAAACGGGAAC
1 GATTCATCCTAAAACCGAAACGGGAAC
1858802 GATTCATCCTAAAACCGAAACGGGAAC
1 GATTCATCCTAAAACCGAAACGGGAAC
1858829 GATTCATCCTAAAACCGAAACGGGAAC
1 GATTCATCCTAAAACCGAAACGGGAAC
* * *
1858856 TACTCGTCCTAAAA
1 GATTCATCCTAAAA
1858870 ACAAACCAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.41, C:0.26, G:0.16, T:0.16
Consensus pattern (27 bp):
GATTCATCCTAAAACCGAAACGGGAAC
Left flanking sequence: Indices 1858248 -- 1858747
ATTCGTAAACCCAAGCAACCTCTTGGTAAATTCAATAATCTTTTTCGTAAATCCAAACAACCTTT
TCGTAAATCTCGTTTACGGAAAATTTCTCAAGATATTCCTCTTCGTCAATACCTTTTTCTTCGTC
GTGAATTTGAATTTCGCCGTAAATCTTCTAGATATTCTAAATACCGTATTCGTATTCGTAAGCGA
TTTTCTCGTAGTAAACGTTTCTTCATTAGATCAAGGAATCAAATCCATTAGAAAAATCTACGTTT
AATTAGTCGATTTATTGGTTTCCAAGGAAAAATCATACCTAGACGAGTTACTAAATTAACCTTAA
GACAACAACGACTAATGACTACTGCTATAAAAAAAGCTCGTATTTTATGTTTCTTACCTTTTCTT
AACAATGAGATATATTTTAGGAGACGCTGGCGACAGATCTTAAAACGTCGTCGTCAAAATCAAGA
TAAAAGAAGATCAAGAAAAACTCGTCCTAAAACCAAACCAAGAAG
Right flanking sequence: Indices 1858870 -- 1859369
ACAAACCAAGAACTACTCGTCCTAAAACCATAAATCCATAAGCATACTTCCCAATTGACTGAAAA
TCCCAAATTGGAATTCAAGCTAAAATGCAGATTTTTTTGGAAAAAGCTTAGAAAACTGGTTGGAT
TCTTGTGTTTTCAAAAAAGGAAAAATAATCTTTTGATTCAAAGATGCTCTTAATTGCTACTATTA
ATCTTTATCTGAATGGATTTTCCTTTTATATCTTCCCGGAGTTCATTCTCCGGGGAATCCTTTTT
TCATCATTATTAATAGATTATTTTAGTATTTCCTCGTTTACCTTATTAGGTTTAATGATTTTATA
AGAAATCTTGGAAAGACCGATCTTATTTGATATTGCTATTTGAGAAAGTATTTGACGATTCAAAA
CAGATTGCTTCTTGTACAGATTGTGGATAAATTGAGAATAACTATCAAATATTTGGTTTTCACGA
GTTACTGCATTTATTCGAGTGATCCACAAACGGCGAAAATATCTC
Found at i:1866339 original size:26 final size:26
Alignment explanation
Indices: 1866310--1866361 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1866300 AATAGACTTG
*
1866310 AGACACTGAGACAAGGAATGCAATGA
1 AGACACTCAGACAAGGAATGCAATGA
* *
1866336 AGACACTCAGACTAGGAATGCTATGA
1 AGACACTCAGACAAGGAATGCAATGA
1866362 TAACTACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.15
Consensus pattern (26 bp):
AGACACTCAGACAAGGAATGCAATGA
Left flanking sequence: Indices 1865810 -- 1866309
CCATACATCTCATCAAAAACAGGATGGAAATTAGGTTCACTACCTCTCCTTGGTATGGTACCGGT
ACCAACGAAAGTACCGAATGGTTTATAGGGGGGTCTCGCTGGCTGAGATCCACTATACTGGCCCA
CTGAAAAAGCAGTTTCCTTGCCTGTTTTCTTTCTTGAGATCCTCTCCAGAGGGACACTTCTGAAA
AAGCAGGCTGTCCGATTTGCACGTTCCGGGTGTTGGCTAGAAGTCTAAAAGGTGAGCGATTTTTG
GCTGTAGAATACATGAACATCTCATTTAGTATGTGACGACCAGGTCTACATATCGCACTAGAACA
ATACGACATCTTCCTGCTCTACCCGAAATATTACACTATCAAGGTAGCAGGTTCTGGTGGAGAAA
CAATCTCCACGGAGGAAGAAAAGATAAGATTAATAGAGAAAAGCACTGGAAGTACCTATCGGCGC
CCAGCTCACTGAATAGAAAGACTTGAGACACACTGAATAGACTTG
Right flanking sequence: Indices 1866362 -- 1866861
TAACTACCAACGAAGGCTGGCTCTGAGAAACAAGAGGAACTAATACAAACCTTATTAAGAATCTA
ACCTCATACATACTGATTCCTTGCTTGACAAAGGGATTTACCTAGCGTAAACAGCGCTCAGTAAA
GGCGCGAAGCCCTTGCAAGTCTAGCATTTAGTCAGAAGACAAGAGTATCGGGTAAGTAAGCAGAT
AACAATTAGGGTAAGTCAGCAGATTCCAAGCAAAATAGTGGGCGGAAGCATGAAGCATATTAGAA
AGTAAATCGCCCATAAACTAATAAATGTACAGAAAGAGTAACAGATAATTCCAAAAATATTAAAG
TGACAAAGCATTCTGCAGCTATTCAAGTCAATTTCTCTCCGGCTAGTAGAGAATCTGCTGTTGAC
TATCTTACTTTAGAAAGGGGAAAGCGAGTAATAAGGTTAAGAAGTTACGATTAAACTGACGACGA
CAAAACATTAAACTTCACGATTTTTTATGCTGCAGAATCTGCTTC
Found at i:1905683 original size:31 final size:31
Alignment explanation
Indices: 1905645--1905706 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
1905635 TTGTTAGAAA
*
1905645 CCCCGTAAAGCGGATAACTCTGTGCTCATTC
1 CCCCGTAAAGCAGATAACTCTGTGCTCATTC
*
1905676 CCCCGTAAAGCAGATAACTCTGTGTTCATTC
1 CCCCGTAAAGCAGATAACTCTGTGCTCATTC
1905707 TGAGCACAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (31 bp):
CCCCGTAAAGCAGATAACTCTGTGCTCATTC
Left flanking sequence: Indices 1905145 -- 1905644
TAGGTCCCTCCCGTGTATCTTTGATCAAAATATGCCTCAACATCCATCCGCAGTACGGAAAGTTG
TAAAGCTGTGAGTCCAAAGTAGGAGAACGCAGCCCGAACCCCAGTAAGCTAGTGAAGAGATAATT
GACCCTATAAGTAAGCTAGTAAAGAGATATTTTCTACTAAATTGCATGGTAGAGTATTATCAAGA
AAGCAAGGTCAATCTAAGCTGACTATGAACTCGGGTGGATTCTTTGGGCGGGCGTATTTGGAAAT
GCAAGTAGCTAGCTCGCTAGGTCAGGGGCACTACTCTGGTGCACTCTACACTTTTGCACTCTATA
CAGAACAGATGCACTACTAAAATACCTCGTACGTAACAGACGAGCAACTAGAATAAAGCACTCCA
AGCTGAAAGCGAGTAAGAGACGAGCAACTTTCATTGTTTTAATCGGTCAAAAACTCATACTCATG
GATTTCCTTCATACGACTTGACGGCTTTCTTCCTTTTGTTAGAAA
Right flanking sequence: Indices 1905707 -- 1906206
TGAGCACAGCCTATTTTTTTCCTATTTACAGCTTCTTTTCTCACTATTGATAATATAGTGGAATA
TAGGGAAATCCTACTTGTATTTGTAGCTTTACACGTATAATGTTCCGTCTTTCACTCTATACATT
AGGAGTTGATCGTCTTTTTCACTACTATACGGCATGTTGCGAGCGAAAGGAGTTTGACACGTACG
TAGGCATGTTACGAACAAAAACAGGTATAAAGAGCTTTGATATCATAAATTTCCCTATAATAGAC
AGGTCGCTATCTTGATCTTTCACCCAGTTGCAGACCGATTCGAATCTGACTCCACAATCAGGTTA
CGTATTACATTATTTGTCAAGCGCCAATGGAAGACCTTGCCTAAAAGCTTTACCCAGAAGCACCA
TAAATATCTTCTCTACTATATTGCTTTGCGTTCATCTTATTCGAATGCGCTACTATTCCTCAAAA
GCCTATCGAGAAAAGGTTGACTTTCCAGGCATATGCCAACGCCCT
Found at i:1906335 original size:21 final size:21
Alignment explanation
Indices: 1906311--1906353 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
1906301 TCACTTCGAC
1906311 TATGCTTTGTTACTTTACTTA
1 TATGCTTTGTTACTTTACTTA
*
1906332 TATGCTTTGTTACTTTTCTTA
1 TATGCTTTGTTACTTTACTTA
1906353 T
1 T
1906354 TGGTATACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.14, G:0.09, T:0.60
Consensus pattern (21 bp):
TATGCTTTGTTACTTTACTTA
Left flanking sequence: Indices 1905811 -- 1906310
ATGTTCCGTCTTTCACTCTATACATTAGGAGTTGATCGTCTTTTTCACTACTATACGGCATGTTG
CGAGCGAAAGGAGTTTGACACGTACGTAGGCATGTTACGAACAAAAACAGGTATAAAGAGCTTTG
ATATCATAAATTTCCCTATAATAGACAGGTCGCTATCTTGATCTTTCACCCAGTTGCAGACCGAT
TCGAATCTGACTCCACAATCAGGTTACGTATTACATTATTTGTCAAGCGCCAATGGAAGACCTTG
CCTAAAAGCTTTACCCAGAAGCACCATAAATATCTTCTCTACTATATTGCTTTGCGTTCATCTTA
TTCGAATGCGCTACTATTCCTCAAAAGCCTATCGAGAAAAGGTTGACTTTCCAGGCATATGCCAA
CGCCCTTGTTGCTTAGTAGCATACGACTACTTATTCCAAGAAAAAGCACTCCATACGCATAAGGC
ACTACGCCTACGAAAACGGAAACATATGCCTACGATCACTTCGAC
Right flanking sequence: Indices 1906354 -- 1906853
TGGTATACTGAGTCAAGAGGTTATGCTCCGCTTTCTCTTCGCTTTCACAACCCAGAAGCTATTGC
TTGTCTGAGCTCTTATCTGATTGGACTTAGTAAATAAAGTATAGACTCTTAAGCAATTAGGGCTT
TTTCTTTTTGCTTATCCTCTTGTACTTACAAGGCAAACTTCCATTTAACTGATCTTTTCGAATGA
GGAACAACATCCTTTTCTGATTAGGACTTTTATGCCGAAGCATTCTCCCCTATCTTTGGATAACA
TCTTGTCGCCGTATTCCATTTTTGATAAGAAAGTAAGCGTAGTAAGGAAAAAGTAACCGTAGCAA
GGTAAAGGGATAAGCCTGTCCTACCAGCCTCAGCACGCCTGAGTGTTCGAGGTAATAAGGAATAT
TATACGTTTCTACAAGTCGGTTATCCGAGTTTGCCTTCTCTTATGATGCGGTTAACCCTACTATG
AGCTCTATGTCGTACAAGGCTGGGGGTGAAAAGTAGAATAAGATT
Found at i:1906668 original size:20 final size:20
Alignment explanation
Indices: 1906643--1906680 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1906633 TTTTGATAAG
* *
1906643 AAAGTAAGCGTAGTAAGGAA
1 AAAGTAACCGTAGCAAGGAA
1906663 AAAGTAACCGTAGCAAGG
1 AAAGTAACCGTAGCAAGG
1906681 TAAAGGGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.11, G:0.29, T:0.13
Consensus pattern (20 bp):
AAAGTAACCGTAGCAAGGAA
Left flanking sequence: Indices 1906143 -- 1906642
GCGCTACTATTCCTCAAAAGCCTATCGAGAAAAGGTTGACTTTCCAGGCATATGCCAACGCCCTT
GTTGCTTAGTAGCATACGACTACTTATTCCAAGAAAAAGCACTCCATACGCATAAGGCACTACGC
CTACGAAAACGGAAACATATGCCTACGATCACTTCGACTATGCTTTGTTACTTTACTTATATGCT
TTGTTACTTTTCTTATTGGTATACTGAGTCAAGAGGTTATGCTCCGCTTTCTCTTCGCTTTCACA
ACCCAGAAGCTATTGCTTGTCTGAGCTCTTATCTGATTGGACTTAGTAAATAAAGTATAGACTCT
TAAGCAATTAGGGCTTTTTCTTTTTGCTTATCCTCTTGTACTTACAAGGCAAACTTCCATTTAAC
TGATCTTTTCGAATGAGGAACAACATCCTTTTCTGATTAGGACTTTTATGCCGAAGCATTCTCCC
CTATCTTTGGATAACATCTTGTCGCCGTATTCCATTTTTGATAAG
Right flanking sequence: Indices 1906681 -- 1907180
TAAAGGGATAAGCCTGTCCTACCAGCCTCAGCACGCCTGAGTGTTCGAGGTAATAAGGAATATTA
TACGTTTCTACAAGTCGGTTATCCGAGTTTGCCTTCTCTTATGATGCGGTTAACCCTACTATGAG
CTCTATGTCGTACAAGGCTGGGGGTGAAAAGTAGAATAAGATTGCAATTCCTAAGTAGGTAGTGC
AAGATGTCAAAGACTAAGTCGGCTGTTCGGCAGGCAGGTTTGAATGCAAAAGATACGGCTACGTG
TTCGACAACTGGATATGTACGAATCAACTAGAAAAACATGACCAACTTATACAACTCGACATCAT
GGAAATGCACCTGGGAAAGACGGTATCTCCATTCCATTCTCCCACCCACTACAACATCTCAAATC
TCGGGTAATCATCTAGAATCAAGCATTGACTTCAAGCACTATACCAGTAATGATGGAAAAGCTCC
TGACTTCAAACACTATTCCCTTTCTTATTTACATACACAAGCGTA
Found at i:1907786 original size:18 final size:18
Alignment explanation
Indices: 1907763--1907798 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1907753 TAGCGTTGAC
1907763 CAGAATATAATAAGATAG
1 CAGAATATAATAAGATAG
1907781 CAGAATATAATAAGATAG
1 CAGAATATAATAAGATAG
1907799 GTCATTGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (18 bp):
CAGAATATAATAAGATAG
Left flanking sequence: Indices 1907263 -- 1907762
ACAGCATTCATATATGTCCGTACGCTACAGTTCTTATGCACCTGTTGTACACTTATTTCCTTGAA
GAAAGAAAGCTAGCTAGTGAGAGATTATCGTCGGGCTCTCACTCGGCTTTAGGTTTTCGCTAGTT
ACATGAACAATCTTGGAAATTCTGGTATACAAACAAACTAAGAATCCTTGCTTCCCATATCCTAT
CTCTTACCTACCTGACCTACTTGACTAACAAGAGAAATATACTAGGGTAAGAGCGTATCAAAGAT
CCATAAGAAAAACGAAACCTAAGGAAAAGACAAAGCCACCCTCAGCAAAAGGCTAAAACAAGAAC
TGGAAAGTAAGACAAAGCCTCGCTACTACTTTCATTCCACACAATATACGGGTTCAATTGAAAGA
AGGGAAGACCTAAGAGCAAGATAGTGTATTCTCTATAGTAACCATTGCCCAAGCCTCCATTTCTG
AATCCTCCTATATACAAGCCTAGCATTCACCCGATTAGCGTTGAC
Right flanking sequence: Indices 1907799 -- 1908298
GTCATTGCAATTATAGAGTTGTATAGAATACTCGGAAATGAGTAGAATTCCAAGGGTAGTGCCAG
TGCCAATCAGATAAGAATGTAATAGTTGCCTAACTCCTAGCCACCCGCAAACTGCATCCGCATAA
AAGCCCTTCGCCCTAACAGATAAGAGAGTCGAAAAGGAGGATACGTGTCACCGACGAGAAAGAAA
GACTATCATATATCATGACTAGCTAATCCATGAATCATCCGGTATTTCCTTTTCTCCTAGGAAAC
GGTGCGTACTTGATTGACTAGAAACTTGATTGAATAGCTAATCTAGATAAAAGCCCCACTATCGT
ATCTATTACCGGGCAAGACTATCCTACCTACTAGAATGAATAGCTTAACGCCTGTAAGAGCAGAG
TCGATTTTCCTATGCTTTTCGGGTATATAACGGGTAGCCATGTGCTTTGTTGAGGGTATAAGCCG
ATAAGAAGAATGGGAAAATAGGCCTTTGGTCCAGTGGGTCCTTGT
Found at i:1953595 original size:30 final size:31
Alignment explanation
Indices: 1953549--1953610 Score: 108
Period size: 30 Copynumber: 2.0 Consensus size: 31
1953539 CCCAATTCTG
*
1953549 TATAACTGTACATGTAGTTAAGCTAATTTGA
1 TATAACTGTACATGTAGTTAAGCTAATGTGA
1953580 TATAACTGT-CATGTAGTTAAGCTAATGTGA
1 TATAACTGTACATGTAGTTAAGCTAATGTGA
1953610 T
1 T
1953611 GCAAGCAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.39
Consensus pattern (31 bp):
TATAACTGTACATGTAGTTAAGCTAATGTGA
Left flanking sequence: Indices 1953049 -- 1953548
ATTACCACTCTTGGGGCATGAAATCTCTCACCACTGCCAAAAACTTTGAAAGAACATACCCCCTC
TTATTTCTCTCGTAATAAAGAGAAGTCTACACTAATCAACCAAGGACCATTCCATTTAGTTCTAA
TCTTTCTTAGAACATGAAATCAAAATCTTCTCAGAATAGAAAGAAGAAAGGCGTACATATACACT
TATATAGATAGGCTCATCTCAATTTAGTAGTTTCTTTATCTTTCCAAAATAGAGTGAAATAGAAT
CATTCGACTTTGACATCTAGAAGACAAGTCAATAAATTATCTGGACCCATACCTATAGAAAAAAG
TCTCATCAGAAAGCAAATAATGCCCAGTATCAACACAACTATGGACTTTCTTCAAGATCTTTTTA
TACTATATTAGTCTTTTTAGGCTATACTACGACATCTACCCTATGTTCCCATAACTTATCTTTTA
GTAATAATCTACTCTTTCTCTTATTCAGCCTCCTACCCAATTCTG
Right flanking sequence: Indices 1953611 -- 1954110
GCAAGCAAACTCACTATATCTTCAGTGGTAAGTTCAGCAGAGCTATATCTTTCGTATTATCCATG
GTCAAAAGTGTGTTATCCTTTTTTCTTAACAAAAGTTTCTATATTAAGACAATAGTGTCTTTTTT
CTTGATTTTCAGTAAAATGCCATACTGATTAGGTGCGGTAGCTTAATGCCGAATTATAGGTTTGG
TTCTATGCCTAGGTACAGTCAACCACTTATGTATGATTGATGACTTCCCTCTTACCCACTTTGTA
TTCTTGCCCTTTTCAGTCGTACTATTTCTAGTCCGTGTTTTCCTTTGCAGTCGGCGGGATTGCTT
TTTATAAGCCTGTTACGCGAGTTTTTCTATAACCTCTAGATATCTATTATCAGTGCCCTCTGTGG
CTTGCTTGTATCAAGTAAACCTTACCTTTTTTTGTACTTTACGAATCTGCCCCTGCCAAGTTAGA
CTATAAAGAAATAATCCCTGTAGACATGCCCCAGTAGTGTAAATT
Found at i:1981913 original size:70 final size:71
Alignment explanation
Indices: 1981839--1982012 Score: 174
Period size: 70 Copynumber: 2.5 Consensus size: 71
1981829 ATTTCTGACC
* ** **
1981839 AAAAGTAGGAAACCCCGGGAAAAACGTCCTACTGGGT-TTTTTCCCTCGTACGACTTTCCGA-T-
1 AAAAGTAAGAAACCCCGGGAAAAACGTCCTACT-GGTCAATTTCCCTCGTACGACCATCC-ACTG
1981901 TGTATGAA
64 TGTATGAA
* * ** * * *
1981909 AAAAGGAAGAAACCTCGGTCAAAACGTCCTAATTGTCAATTTCCCTCGTACGACCATCCACTGTT
1 AAAAGTAAGAAACCCCGGGAAAAACGTCCTACTGGTCAATTTCCCTCGTACGACCATCCACTGTG
* *
1981974 TTTGCA
66 TATGAA
*
1981980 AAAAGTAAGAAACCCCGTGAAAAACGTCCTACT
1 AAAAGTAAGAAACCCCGGGAAAAACGTCCTACT
1982013 CCCGCTTCTT
Statistics
Matches: 81, Mismatches: 20, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
69 3 0.04
70 46 0.57
71 32 0.40
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (71 bp):
AAAAGTAAGAAACCCCGGGAAAAACGTCCTACTGGTCAATTTCCCTCGTACGACCATCCACTGTG
TATGAA
Left flanking sequence: Indices 1981339 -- 1981838
AATTTCTTAGATATACCACCGCACCCCCAAGGATTGGGACCCAGCGAGTAACTACTAATGTATAG
AGTGAAAAGGCGCACTCAGTTGAGAGACTCCAAGTCAGTTTATTAAAGAAAGCACAGGAATCAAT
TGCTCTCAGGTCGACTCTTCTAGTAATACGTGCTTGGGATTGATTGGTATTGATATGGGTGGTCT
CACTGATATGGCTTTTTATCTCCTCATTTCATTTACTGGTGAACATGTAGCATATTCAAATAGAG
TTTGAGGATTGCGATCTTTCGTATATAGTACTGTAATGTTTGTGCATGACTTAATCCTACTGCGG
AAGACTACCGATACTACTACTACTCTATCTACGAGGTAGCTATCCCATCTATCAGCCATTACTTT
CCTACTTCACTTAACCTCCTTGTCGGTAACATCACACCTCCAGTAGGAATCACCTATATGCAAAA
GTCAGACTTCCCATTTTCCCTAATACGAGACCTATATTTCTGACC
Right flanking sequence: Indices 1982013 -- 1982512
CCCGCTTCTTACATGGACCAGGAAAAGCATGTATCTTTCCGTACGTAAGTGGTCTCAGCAATACA
AAGTGCTTTTCTCCTTTGCTAGGAAAGAGAAAGCTCTTGCCTTTATTATATGTTGGAAGAACCTC
GTGCTTCCTTTGAACTTCGGACTGGTGAGTTGGTCAGCCTAGGTTCGTTCGAGCAGTATCGTATA
TGAGGTAGTTGCATTATTCGCTCCCGAAGTAGTGCCCCACCTAGGATCTATAGTCGGTCCTTACG
TCGGCGTTGGTCAATGTGATTTATTCATTGCCGATTTGGAATTTTTTGGCAAATATTCCTATCCG
TGGTCAACATTTCCGCTTGAATCACCCACCCTGTGACTATCTGATACTAAATTCCCGTATCTATC
ATCTCAGTATTCCTACTCACATTATTCTCCAGGTTAGGTAGGGGTATTCCGCTTTTGGTAGTTGG
TGCTTTCTCTTTCCGTAACATATAGTCGTCTAACCTCTTTGCTGA
Found at i:1992322 original size:29 final size:29
Alignment explanation
Indices: 1992261--1992323 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
1992251 TGAGGCATCT
**
1992261 GGCTAGGAATTACCGGAACTTGGTAAGCT
1 GGCTAGGAATTACCGGAACTTGGTAAGAA
* *
1992290 GGCTAGGGA-TACCGGAACTTGGTTACGAA
1 GGCTAGGAATTACCGGAACTTGG-TAAGAA
1992319 GGCTA
1 GGCTA
1992324 CACTGGATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.22
Consensus pattern (29 bp):
GGCTAGGAATTACCGGAACTTGGTAAGAA
Left flanking sequence: Indices 1991761 -- 1992260
TTTGCTTTTGGAATTGGTAAGGAGCTATAGGCCTGTGAAAGAGGTCCAAATCGTCCTATTTTGAG
CTCCCCCTCCCTCCATTCCGGACTCTTTTCTGAGTGGTGATCACTTCGAGGTACCCGTAGACCTG
ACTGAAACATTATGGCTGCCCCCATATCCCAAAGAAAGGAAATCATCACTCCCTCGCTATAGAAA
ATATTATCCGGCCATTCCTCTCGGCTTCGCTCCTTCTTTTAGACCAATGAAAGAACTTCGCCCCG
GAACTGAGACTATTACTTCCTTGATTAATCTTAGTGAAGACTAGTTATATTAGCTTTGGCTTACT
TTCTTATCAAGATAAATAGCACTTATACATAGGAGACCGGACCGCTTTATTTGAGGGTACTTTCT
CAATATTCAAACAAAACACTATAGCACATTAAGAAGGTAAAAAGCAGCGGGCTAAGCACAAGTGG
AACTGCAGTGAAAGGAGCCAAGCAAAGAGTATGAGTGAGGCATCT
Right flanking sequence: Indices 1992324 -- 1992823
CACTGGATAGCCGGCAGGTCTGGCAGTTTGATGCCTGGAACTGAAAGGAATAGTCATTTGCTTAC
CTACCCGTATATCCAGCTTTGCTGACCTACCTGTACGAATGTGCTGAAACAGAGAATGAGGTGAA
CTACCTCATATCCGGCTTTCGGCTCCAAACAACGCCACCTGGTCCTTCTTTCGCGACTGACTTCA
CTTACTTGATGTGCAAAATAATTCCAGAAACTAAAATCGCTAACTAATGACTGAAACTAGTAATT
GTGCGCGTAGGTCCAACTAGCCCTACTTTGCTGAAACTAGTAAGAGAGCTGCTCCTAACCACTTT
CCGAAACTGATTTCCCCACTACAGCTATTTCTTGACTTATTTATATAGTTGAGTTCATGATTTGA
TGTAGTGCCAACTAAAACATATCCTTTTGCTTTGATTCCTTTAGCTTCTGTCTAATGAAAATAGA
AAAGATAGGTGACCTGTGCCATTGCATGTCTATCTCCTCCTCCCA
Found at i:2011464 original size:24 final size:24
Alignment explanation
Indices: 2011437--2011485 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
2011427 CTTCTTGCCC
2011437 CAGTGAGTAACTA-CTCTTTTCACT
1 CAGTGAGTAACTACCT-TTTTCACT
2011461 CAGTGAGTAACTACCTTTTTCACT
1 CAGTGAGTAACTACCTTTTTCACT
2011485 C
1 C
2011486 GTAACATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (24 bp):
CAGTGAGTAACTACCTTTTTCACT
Left flanking sequence: Indices 2010937 -- 2011436
TTCCAATCCCAGCTGTATCTAGCTCAGTTGGCATGCATGCTGCTCCCTTGTGGACTAGTCAGTTT
GGACAGTTGTACCAAAGCCAGAAAGAGCCAGTGAAAGGACAAGTACTAGTTCAGTAGGTTCCAGG
CCAGCCAAAGATACTGATTTTTCTCCTGCATCCGACACGGCTAGTAGGACAGCTTGAGCTGAAAC
AAATAGTTGTCCGGCCACAGCTTGTCCTGCACCCTCGGACCCTAGCTTATGACTTTCACAGTTTG
CTGTACCCGCGGAATGGACAGCCGGGACAGAAGGAGTAGGTCTGCCGAGGCAAGAAAAGGCAGTA
CTAGGCAACGTATAGAATTAATAGCTCTCTTTCGACAGCCAAGCCAGCGACAGAAAAAGCTACTT
ATTGAGTCGCAAAACCCTGAATGGACAGCCCCCGCTTTAGTAGGACAGGCTTGAACAGCCCCAGC
TTCTCCTGCAGCCGACCCAGGTACTTCTTTTTCGGCTTCTTGCCC
Right flanking sequence: Indices 2011486 -- 2011985
GTAACATTAGTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCA
AAAGGAACATGCCGTAGTGTATCGTCTGTTACGAACGAAAAGGTTAGTATAAGTTCAATTAAGTG
GACGGTTGGATGGGGGAGACTTCAATGCGATGATCTGAGAAAGATGGAATACGCTCCCTTTTGTA
GAAGGTGCTGGAAGAGAAGCAACAATTGGTGCATCCATAACTAGGTATCCTTTGTGGCATGTTTT
CGAGGTTTGTAGACTTGTACAGAACATGCGGTGGTTAAGTGGTGGTGCCGACCAATCGGATATTG
CTTCGTGGGTTTTGGCGGTTGGCAACGGTACCGCGCCGATGAGGGCTATCGGAACTGATCCGATA
CCAAATTGTAGAAAAATACCTTCTTACATGCTGTGGTTTCGCCTGGTGATGATCCCATCAGATCC
ATCTGCTCAGAGATCTACGGTGACATGGCTACGGTTGCATATAAA
Found at i:2012872 original size:20 final size:20
Alignment explanation
Indices: 2012849--2012893 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
2012839 GGGCATTCTA
2012849 GGAGTTAGACGAGCATAATT
1 GGAGTTAGACGAGCATAATT
2012869 GGAGTTAGACGAGCATAATT
1 GGAGTTAGACGAGCATAATT
2012889 GGAGT
1 GGAGT
2012894 CTTTCTGTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.09, G:0.33, T:0.24
Consensus pattern (20 bp):
GGAGTTAGACGAGCATAATT
Left flanking sequence: Indices 2012349 -- 2012848
TACACGTTAGTAGTTACTCGCTGAGTGAAAAGCGAGATTTCTCTGGACAAAGTTTCTAGGTCGGC
GAGCCATAATAGTCAAAGGGCTATCTGGTTCTTTCTTTTCCAGGGAAAGACTAACTAAGTGCACA
TGCTCTCCCGAGAGGGTGAGATACGAGATCTTAGAGTTGAGTATGAGACTAAGATTCAGTCTTTA
CCGACCGTGGCGAGAGATCAAATTATGTACATGAGAGGGCTAACCGCTTCGCGCCTTTAGGGTAA
TGAAAGTTCAAGAGCAATTCAATAGCCGTTTTCCTTCTCTTGCTTGTGTCGGGAGTGGCGGGCGT
TGGAGTTGTTGCTTTTCTGACGGTTTGAGTTGTAAGAAAAATGCAAATTTATGCTATATGCCTCT
GGTCAAGCAATCTTTTGAGAAAGTAAAGTGAGGTTTTTCTGTTTCTTAGTAATTTGGTAAAAAGC
AAGTGAGGTTTCAAGCAAACCAGTTTGATTCCGTCGGGCATTCTA
Right flanking sequence: Indices 2012894 -- 2013393
CTTTCTGTCTTGAAAATGGCAGGAAGTCAAATGGGTAGGAAAGTCTTGAGATTGAAAGCTAGAGA
GCAATTTCTCCTCTTTAGAGTCTATATCCCAGTCCTAGGATCAGTCCCGAGGATACTCCCTATTC
CGGAAGTTTTTGACCACTGAAGATTAGAAAGTAGCTAAAGACCAGCTACGTATCAAGGGCTCGGG
CCGAAACGCATCCTTTATAGTCGATCTACCGCCCATACAGTAAAGAATCTCAAGTAAGTGGGTAG
CTGTAGGAACTAGTGGCATGGAGTTGAGAGAGCAATAAATAGGTGTAATAACGTGTAGGCCTTCT
TTGACTTTTCTCGTTAATTCCTGATATGAGAACATGAAAATAGAATGGAGCATAAGCAGACAACT
ATACTCTATTTATTGAATTGACAGCGTGAAAGTCGTCTAGTAAGGTTCCAGCTATAGTAGCTGGG
CCTGTAGTTAATGGATATTATAGTAAGTAACTGGTCTTCTTGTTT
Found at i:2019190 original size:21 final size:21
Alignment explanation
Indices: 2019164--2019207 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
2019154 ACATTAATTT
2019164 ATGAAGCTAAGTCAAGTCGGA
1 ATGAAGCTAAGTCAAGTCGGA
*
2019185 ATGAAGCTCAGTCAAGTCGGA
1 ATGAAGCTAAGTCAAGTCGGA
2019206 AT
1 AT
2019208 CGAGTTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.20
Consensus pattern (21 bp):
ATGAAGCTAAGTCAAGTCGGA
Left flanking sequence: Indices 2018664 -- 2019163
CATTACCTTCTCACCCTATGGAGAAGAATTTTGAGAAATTGGAAACCCATTGTTCCAGAGCATTT
AGAGAGGCATTGACGTCGCAAGCAAGGAGAACTGGATATCATAGCATAGGCCGACCACGAGCTTT
CAATGCAGCAGAGTATGCTTGAGTAATTCTCTTTTGTGCCAAGAGATTGGTTACTTTTCACTACG
GGTTGACGCTTTTCATCTTTCTCAGCGAGATAGACTCGCGGAGCTGCAAAGAGTGCTTGCGAACA
CATCATTGTATGGAGTCCCACACTAGCATATGGTGCAGTGGCATGTTGAGTCCCGGGTGAAGACA
TCTATTTCTGTAGCATAGCTGCTAGGATCAATTGAGAAGTCTCATCCCGAGCTTGCCCCACCCAT
GTTCTTCTTTCGAATCGTCTTACAAAGTCAGTATAGGAAAACGAAGAGGAAGGAGTGACACAGTG
AAATGGATTTCAAAGGCAATTGGATATATAATAGAACATTAATTT
Right flanking sequence: Indices 2019208 -- 2019707
CGAGTTAAGATAGACTCGCATCTGAAAGGTATATCATCTCTGAGAAAGATACCAACCCAAGGCCA
AGATCAGTGGACTGCAGAAGCGCAATGATAAGAAATAACAAAGTAGGCTTGTCAGCATAGAAAAT
ACCCTATTAAGGCAGTAAAGAGGGAGAAACGCGGCAACGGTTTGCTTACAAATGATTGAAAGTCA
GGCAGGGGGAATTATTTCGAAAGAAGCGATAGATGTGCTCCTACTTCTTCCAATACCAAGGACCA
AATGGGGGATTTCTATTCTCAATTTAATATGCATATTGATTTGATTATAGACGACGTATCCGGGT
ACTCTACATACAGGACGATAAGACCCCCCTCAGCCATGCTTGATGGCTTGGCCACCTGTGGCTTT
GTTGACCAGAAAAAGGCCCGACAACAGTTCTGCTGAAAGTAGCAGGAGATTTTGATGGCCAATAA
GCTGGATTCCCTCCTTGCTTTACCTACTTTTTTTCTGAGACTGCT
Found at i:2020419 original size:19 final size:19
Alignment explanation
Indices: 2020395--2020432 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
2020385 AGAATTGGGT
* *
2020395 AAACCTTCTCCTTATTCTG
1 AAACCTTATCCTGATTCTG
2020414 AAACCTTATCCTGATTCTG
1 AAACCTTATCCTGATTCTG
2020433 GTAATGTAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.08, T:0.39
Consensus pattern (19 bp):
AAACCTTATCCTGATTCTG
Left flanking sequence: Indices 2019895 -- 2020394
AGCACTTTCTCTTTGACTTGAGGGGAAAGAGCATCAACTTTCTTGGATGAGAAAGAACGAATTCT
GATTCAAGGTCTCATGATTAATGGTTCGAGTTTGTTTGTTCTGCCACCTGTCAGAAGTGGACTTG
GGTTTTTCGACAAAGTTGGGTAGGGTTTTGACCTAGATGGGAAAATCAATAGGTAAACTGAATTG
ATAGAAGTTCCTCAAGGGCGCTAAGCAGGATGCTGGGATCTATTTTGGCAGGTAACAATTGAGAG
GGAGTTCACCTCATTTCTTATTTCTATAGAAAACAGCAAACACACTTAACACCTCACTTGGGAGT
ATTATGAGTGAATAGCCCCACGATTATGTGAAGCACTCACAAGATTATGTTTCAGAAAGAAATTG
CACAAGGTTCCTAAACAACTGAAATTGGCTTTCTACGAGTAAGTAAAAGCAAGTGAAAGGAATGT
GTTAAGCTTTTTTCTCTATTTATGATTCAATGTCCAGAATTGGGT
Right flanking sequence: Indices 2020433 -- 2020932
GTAATGTAGAATTTCTCTATATATGAGAATTTTTTCCAGCACGCTGACTTTTCTTATTCCTTACC
ATGACCTTCAAAGTCGATTTCCGGGGTGGGGAGACTAGTATAAACAATAGCGGTTCGGAGACACC
GATTGGTCGGCTCGCTACAAACAAGCAACGGATGGAACTGCGCTAAGGAAAACTGCACCAGTCAT
AAGAAAGACAAATAAGGAAATAATTAGTCTCTCGTTGACTTGACTCTGTTCGCGGAGCTCTTGGC
CTTGCCTTTGTCGCATGTGGATTGGTTCACCTTTCAAAATATCTTCTGAGTAGGTGATGAACCGA
ATGGTTGTGCGGACACTCATCATGTTGCAGCCTCTCAGAAGCCAGGCCTCACAAATCCTCAGCCA
GACCTGCTCCAGTCCAGTTTGGAGAACCTACAAATATATCAAAAATAGAGATATTTCTTATAAGC
CATCTGAATACAAGCCCAGAAAAACATAATAATACCGCTTTTTCA
Found at i:2026761 original size:16 final size:16
Alignment explanation
Indices: 2026740--2026771 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2026730 CCTGAACTGC
*
2026740 TCTATGAGTCATATCT
1 TCTATGACTCATATCT
2026756 TCTATGACTCATATCT
1 TCTATGACTCATATCT
2026772 CAGAATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.09, T:0.44
Consensus pattern (16 bp):
TCTATGACTCATATCT
Left flanking sequence: Indices 2026240 -- 2026739
CAAAGAATGTGCTAGACTATTCGCAGGAGTAGAAACTGCAGCGGTTCAAAAATTGCAACCTTCCA
AATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAAGTTGTACCTGTAAACCAACCC
CCTAAAGCAAAATAAGCACAAGGAAAGAGCAATAGGCCCGACCATCCTACAAAAACGAAACGGTC
TCTTCGTAACCAGTCATCCATAATATCAAATAAATCATTTTGATCTTTGGTAAATCTACCAAGAG
CTATAGTCATAGTGATCCTCCTGTTCAATTACTGAAACCATTTTCGAACACCTCATGGTAATTCT
AAGGCATATGATAGTTCAATCATCTATGGACGATTTCTCCTTCAAGGCCCTTTTATTTACAATGG
GTTTCGAAGATACAAGTTCTTTTTTTTCTATTAAGCCACAAAACAATCTAAGCAAATCCATGAGC
TCGACCGGATTAGTGCTTATTAACAATATTGAAATCCTGAACTGC
Right flanking sequence: Indices 2026772 -- 2027271
CAGAATATATCTTTTAACAAGATATAGTAAAAAAACCAAAAATTTCCTATTTTTTCATACCATTA
AATAGAATATGAAATAATGGTATCTTTGAAAGAGAAATCCTTTTCTTCCATTCCTTCCCTATTGT
ATTGGCAAAACAATCAAACAATATTGATTCGTCAAGGAAAGATATTTCCAAATCGATTTTCGAAG
TAAACTTTTCGAAATATTTTCTATATAGCAGAAAGGAATAACAATTTTTTTCTATAGAATCAATA
TCCAGTAACAAGAATAGAAAATCGTAAATATTGGCAAATTCTTGCTTTGCCGTGGTCTAAGGAAA
TCAAAAGAATCCGCTTATCCTTAGAAAATCTTATCTATTATCGAATTTCTATATCAGAATAGTTG
ATATAGTCATAATTCAATGAGTTAGGTCCACTTACTTTTGATTTTCGTTTTGAAAGAAAATAGTG
AATTTTCGAAGAAAAATGGAGATGTAGAAATAAGAACACTTTTTT
Found at i:2056397 original size:28 final size:28
Alignment explanation
Indices: 2056347--2056400 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
2056337 AGTCGAGTTA
* *
2056347 TTCTCCACAGTAACCACTCGCTTTTGAG
1 TTCTCCACAGGAACAACTCGCTTTTGAG
* *
2056375 TTCTCCACGGGAACAACTTGCTTTTG
1 TTCTCCACAGGAACAACTCGCTTTTG
2056401 CAAGGCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (28 bp):
TTCTCCACAGGAACAACTCGCTTTTGAG
Left flanking sequence: Indices 2055847 -- 2056346
AGTCTTTCTCTTATGGGGGTCCGATGCTCCGTAACCTCCGTAGTATGACCCAACGAGCTCTTCCG
TAGCAAAGAAGAACGCATATTCCCCATCGTCCGATGCAAAGGAAAAAGTAGGAAACCCCGGTCAA
AACGTCCTACCCGCGATTTGCCCTCAGTAAGTGCATTTTGCAAATGCACTTTTTATGCCAGCCTA
TAGCCAAAGTGATAATGGCTATTTTCCCTAATACAGAACTTTTCCATTGAAACTTTTTGATGCCA
GCCTATAGCCAAAGTGATACTTGCTTTCGAGACAGATCTCGTCGAAACTGAAAGATATGCTTTTG
CTTAACACAAGACATATTGAGAACATACTTACATGCTGAACACACGCAAGTACTCGGGTGTGAAA
CATGCCAAACCAAAATCCACCTATACGCTGTTCACAGACAAGCCACTAATCTACCTATACGCTTA
ACATATGAAAGTAGGAACGAGGGAAATGCAATTAGAGTCGAGTTA
Right flanking sequence: Indices 2056401 -- 2056900
CAAGGCATTTTCTACTGTAACAACACGCATATTAGTCACATTCAAAACTACTTAATTGAACCTAT
CACTTCTTTCCCTGCAAATTTGACTTTCTACCGCCTGTCTGAAGATATAGCCCAGACAATAGCAA
TATCTGTCACTACCACCTCAAGTATTTGGACGGTTCATGGCATACAAAAGCATTTTGCCCAGCGA
TATGGGGGAGACCCTGATGATTACATTGTTACACGCTACTCGGCCTCAACAATTCTAATTCAATT
ACCACATAAACTCCGACGTGAACAAGTTATACAAGCGAATCCAGAGTGGGCTGCACGAGTTGGAC
TAGCGATTTATGAATACAGTGATGCCTCCTGGCCGTACGTTTTCCCTGCATATATGATTCTCATC
AAGGTATCAAACTTCCCATTGGCTTTATGGGAGACGCATTTCTTCGCTATAGCGGTGTATGAGTT
TGTTTGGTGTTTTGGCTGGTGTTCGTGAGGACAACTTAAGAGGAA
Found at i:2084027 original size:17 final size:17
Alignment explanation
Indices: 2084005--2084038 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2083995 AGAAAGATAA
2084005 GCTACAGACAACTAAAG
1 GCTACAGACAACTAAAG
2084022 GCTACAGACAACTAAAG
1 GCTACAGACAACTAAAG
2084039 AAAACAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.12
Consensus pattern (17 bp):
GCTACAGACAACTAAAG
Left flanking sequence: Indices 2083505 -- 2084004
TTCCAGTTTCAAACACTGTAAACGAGAGAGCAGATTGATAACTCGAAGAAAAGCTTGTAGCTGAC
TGTCAATCTTACATGAGCTGGTAATACAATGGATAGAGCGAAGCGCCAACAGCTCTTGCAATCTC
ATATCTAAAAGCTTAGAACTTCTATTAAAGTATCGAAGTGAGCAAGCACTACTGAAGTTCTTCTT
TCTGTCTTGTAATCTTATAGACGAGTTGTGCAATCTGATTGGTTGGTATTTTGATAGCTAACAGC
AAAACTTCTAGCTCGAATTACTACCATGGAAGAAGCGTAAGCGGCAAGCTCGAACAACAGACAGG
GATCGGAAGGACTGTTAAGTTAGGGAAAGCGCAATCTCAAGCAAATATCATGAAAAGCGTATATC
ACTACGTTCACTTCAAGTCAGGAAAGATAGTGCAAATAGCAAAAGTGCGAATTGTTCTTCAAGTG
CTGATTCCTCAGGCAAATATCATTCACTGCCAAACAGAAAGATAA
Right flanking sequence: Indices 2084039 -- 2084538
AAAACAAATGAACAAATGAGAAAGCTAGTGCGTCGCAATAAGAAGTGAACTGATTAACGAGAAGG
TGCTGCTTATGTAGTGCTCATAGCTTCTTTCAAGCAAGTGCTTCTTGTTTCAAAGCGTATTTCAC
TACGTTCACTGAATTGCTTATTTGTCTTATTGTTAGTAGTGAACAAATGAACAAGCAAAAGCAGA
TCATTAAAAGAAAGCAAGTGCGCGTATTTCCCTGAAAAGTCAAAGCTGCTTATTGTGGAAAAGCC
TATTTTGCTGATTCTGTTGTTTTGCTTAAAAGCTTTGAACTGAAAGCTAGGAAATCAAAGCTTAT
TGTGTTTATTGTTCTCAATCTCTAGTGAAAATCTCTAGTTAACTGAATAAAGTGCTATTCGCCCA
TCAAAAAAGTACTCTTTTGCTGTCTTTGCGTGCAAGCCAGTTGCAGAAAAATCAATCCGTTGAGG
GAGTAGGAGTTATTGTTGAAGTATCCTTGTGGTGAGCGTTCCTTC
Found at i:2108893 original size:14 final size:14
Alignment explanation
Indices: 2108874--2108948 Score: 53
Period size: 14 Copynumber: 4.8 Consensus size: 14
2108864 TACTTGGAAT
2108874 GGAGAAGAAGGATC
1 GGAGAAGAAGGATC
2108888 GGAGAAGAAGG-TGCGC
1 GGAGAAGAAGGAT---C
2108904 GCGTAGAGGAGAAATGGATC
1 G-G-AGA--AG-AA-GGATC
2108924 GGAGAAGAAGGATC
1 GGAGAAGAAGGATC
*
2108938 GAAGAAGAAGG
1 GGAGAAGAAGG
2108949 TGCGCGCGTA
Statistics
Matches: 50, Mismatches: 1, Indels: 20
0.70 0.01 0.28
Matches are distributed among these distances:
13 1 0.02
14 26 0.52
15 2 0.04
16 4 0.08
17 1 0.02
18 6 0.12
19 1 0.02
20 4 0.08
21 2 0.04
22 2 0.04
23 1 0.02
ACGTcount: A:0.40, C:0.08, G:0.44, T:0.08
Consensus pattern (14 bp):
GGAGAAGAAGGATC
Left flanking sequence: Indices 2108374 -- 2108873
TTGATACTGATTATTCAATTATCCGGCTATAATTGATACTGATCTATTTCTTCATACTAGAAATA
GCCAAAACAAACACATAACACCATATCTAGAACAATAATCAAGCAACGAGTCTAAAACTTCATCA
AATTCCAAATAATAATAGAATTAAGCTTTAAGATTGTGCAACCATCACAAACAACACAGATCCTG
GTTCGTAACAATTAATAGGAACAAAATAAGCACCAATTCCTACTTTCTATTTCCAATTTCAATAT
CAAATTCAGGAAAACCAAGCAAAACATGCAACTAAACGAATTTGACATCCTAAAACGCTATAAGA
ATTTGGGAGATAAGAAATGAAAAGGATCAAAAACAATTTCAGACCATATCTAGAAGAAAAATTCA
GAAATTATTGCACTAACAATAACAACCTAGGATAGAAGAAAAAGCAGAGAGGGGGTTTACCTTGA
GCTTGGGAAGCTTGATGGCGGAGAGAAGAAGCAGCTACTTGGAAT
Right flanking sequence: Indices 2108949 -- 2109448
TGCGCGCGTAGAGGAAGATGGATCGGAGAAGAAGGTGCGATGGCGATTGCTTAGGTGCACGCGTA
GAGCGGAGAGATGGATCGGAGAAGAAGGTGCGATCTGAGATCTGATCGAAGAAGGGTTTCAATTT
TCAGAGGAGAGATCGGAGGGTATTAACGTCTTTTTCCAATCAGCGCATCTGATCTGACTTGTGGG
TCCGGAGGCGATCGAAAGGCACCTTCCGAAATCCGACCAAATTTCGACTAAACTCCCACGATTTC
AGAGCCAGATAATTTTCCGACAAAATCCGATACAATGAATTGAAATCCAACGTTTTCCTAGATTG
TGATCAGGAAATTTTGAAATCACAGGAATTCCGAATCCAATTCCGATGAGAAAAGTGGATTTTGA
TCAGGGCCATACTGCTTTTCCTTGCCTTTACAATTGGAATACACTGGACAGCCTTGACAATTTTC
ATACACTGGAAAATAGAGCTCACTTACCTGATAGACTCTCATCTT
Found at i:2108944 original size:50 final size:49
Alignment explanation
Indices: 2108874--2108983 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 49
2108864 TACTTGGAAT
*
2108874 GGAGAAGAAGGATCGGAGAAGAAGGTGCGCGCGTAGAGGAGAAATGGATC
1 GGAGAAGAAGGATCGAAGAAGAAGGTGCGCGCGTAGAGGA-AAATGGATC
*
2108924 GGAGAAGAAGGATCGAAGAAGAAGGTGCGCGCGTAGAGGAAGATGGATC
1 GGAGAAGAAGGATCGAAGAAGAAGGTGCGCGCGTAGAGGAAAATGGATC
2108973 GGAGAAGAAGG
1 GGAGAAGAAGG
2108984 TGCGATGGCG
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
49 19 0.33
50 39 0.67
ACGTcount: A:0.37, C:0.09, G:0.45, T:0.09
Consensus pattern (49 bp):
GGAGAAGAAGGATCGAAGAAGAAGGTGCGCGCGTAGAGGAAAATGGATC
Left flanking sequence: Indices 2108374 -- 2108873
TTGATACTGATTATTCAATTATCCGGCTATAATTGATACTGATCTATTTCTTCATACTAGAAATA
GCCAAAACAAACACATAACACCATATCTAGAACAATAATCAAGCAACGAGTCTAAAACTTCATCA
AATTCCAAATAATAATAGAATTAAGCTTTAAGATTGTGCAACCATCACAAACAACACAGATCCTG
GTTCGTAACAATTAATAGGAACAAAATAAGCACCAATTCCTACTTTCTATTTCCAATTTCAATAT
CAAATTCAGGAAAACCAAGCAAAACATGCAACTAAACGAATTTGACATCCTAAAACGCTATAAGA
ATTTGGGAGATAAGAAATGAAAAGGATCAAAAACAATTTCAGACCATATCTAGAAGAAAAATTCA
GAAATTATTGCACTAACAATAACAACCTAGGATAGAAGAAAAAGCAGAGAGGGGGTTTACCTTGA
GCTTGGGAAGCTTGATGGCGGAGAGAAGAAGCAGCTACTTGGAAT
Right flanking sequence: Indices 2108984 -- 2109483
TGCGATGGCGATTGCTTAGGTGCACGCGTAGAGCGGAGAGATGGATCGGAGAAGAAGGTGCGATC
TGAGATCTGATCGAAGAAGGGTTTCAATTTTCAGAGGAGAGATCGGAGGGTATTAACGTCTTTTT
CCAATCAGCGCATCTGATCTGACTTGTGGGTCCGGAGGCGATCGAAAGGCACCTTCCGAAATCCG
ACCAAATTTCGACTAAACTCCCACGATTTCAGAGCCAGATAATTTTCCGACAAAATCCGATACAA
TGAATTGAAATCCAACGTTTTCCTAGATTGTGATCAGGAAATTTTGAAATCACAGGAATTCCGAA
TCCAATTCCGATGAGAAAAGTGGATTTTGATCAGGGCCATACTGCTTTTCCTTGCCTTTACAATT
GGAATACACTGGACAGCCTTGACAATTTTCATACACTGGAAAATAGAGCTCACTTACCTGATAGA
CTCTCATCTTACTTTACCTGCTGCCCTACTCTTATGGAACTCTCA
Found at i:2113384 original size:26 final size:26
Alignment explanation
Indices: 2113344--2113395 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2113334 AGATTTCTTG
2113344 TCAAGATAGAGA-TTTCCTAATCCATA
1 TCAAGATAGAGATTTTCC-AATCCATA
*
2113370 TCAAGATAGATATTTTCCAATCCATA
1 TCAAGATAGAGATTTTCCAATCCATA
2113396 GGAAAGGTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (26 bp):
TCAAGATAGAGATTTTCCAATCCATA
Left flanking sequence: Indices 2112844 -- 2113343
TATTAGTATCCTGCATCTAGGAGCAATACCAAAGTTCTTCAAAGAAGGGTTACCTTGACTTAGGT
CTGCCTTCGGCCTAGGTTCATCTAGATGATGATAGAATCTCTATCGTTCCGCTGTAAGAGTCGAA
TATGAGACTTTATACACCTTAAAGTCTCATAGGACGAAAAGAGGTTTCTTGAGGCACTTATACAT
ACTCATTATGCCTAGCATTGAATAGATTGGGTATTGACCTTATCAACTAGCAAATCAAGGACGGG
TTTGACTGGATTTTGGATCGAGAATCACATCCAAATCGTGCTGAACCCATTATGTGTCAGGCTAT
TGTTCTCCCCTTTTTCCAATCTATGGAGTAAGACATTGATTTTGGAATCAGACTGATTCATGTTC
ATTGCATAATCAGCTTCTTTGAAAAACATTGGCGCACGTGTAAACGAGGCGCTCTACCAACTGAG
CTATAGCCCTTGTTCGAAACATCTTAACATAAAAAAGATTTCTTG
Right flanking sequence: Indices 2113396 -- 2113895
GGAAAGGTCTCTGACCTATTTATTATGAAGAAATTGGTCCTGGAATAGATTGGTATTGCTTAGAA
AGCATATTCTGTCTATAATTTGATAAGTGGTCCATTTTGCTTTTTGGTTTGAAATTACCTACTTC
ACTCAGTGGTTAGAGTATTGCTTTCATACGGCGGGAGTCATTGGTTCAAATCCAATAGTAGGTAG
AACTTATTAGATATCGTTGCATTGACCCTGGTATCTAATAAGTTTTTCTACTTAACCGTCTTTTT
TCCTTGTTTGTATCTCATTCAAACTGAATGTCTTCAATTAGAAGAAGACAGTATCAAAAAAACTT
TGAAAAAACTGATTTGGATTTGATGTATTGATTACAAAATCAAATGTTTCAGAGATAACATTCAC
AGCCTCTACTCGTAGCCTAGCTCGTCTAAGAGCTAGATTTGCTTCAATCACTTGTCTCTTACCCT
TAGCCTTCCTGAGGTTAGCTTCAGCTATTTCAAGAGCTTGTTGAG
Found at i:2116178 original size:16 final size:14
Alignment explanation
Indices: 2116159--2116196 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 14
2116149 GAATCTTATA
2116159 ATTCTTTATTGAAATG
1 ATTCTTTATT--AATG
2116175 ATTCTTTA-TAATG
1 ATTCTTTATTAATG
2116188 ATTCTTTAT
1 ATTCTTTAT
2116197 ATAGCTAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 12 0.57
15 1 0.05
16 8 0.38
ACGTcount: A:0.29, C:0.08, G:0.08, T:0.55
Consensus pattern (14 bp):
ATTCTTTATTAATG
Left flanking sequence: Indices 2115659 -- 2116158
ACAAGTCGTCTTTTCCCGTTGTTATCTTTTCTAGGAGTGCCACTCTTGTTTTTTTTCATAAACAA
CATGGATTCTATTCATATTAAGAAATTGTTATTTAACCCTAACTAATTCGAATTGCTCGTTTCTC
TTTAACGCAAAAGAGAGTTGTTCTCTCTAACTTTTTCCCCGTATTTTGGAATCGTAGAAAAATAT
CTGTGAAACCAAAAGTTATCAGTTCAAATCCAAGGAAGGCCTTTTTCTATTTTGAAATAGAAAAG
GAGTTTTCTTGGAAAGAGCCATAAGGCTATCCCCATCCTAAGGTGCTATACTACTAAATGAAAGG
ATCTTGTCAACGTCCATAAAGAATCAAAGAATTCCCATTTCGTTATTTTGAGTAATTCAAGATCA
AAAATAATTAGCAACAAGGGTCAAATAATAATTGGATCAATATAATGTTGGCCAATAATCAAATT
ATTATTCAAAATACTCGAATAAGATTCTTATTCAAGAATCTTATA
Right flanking sequence: Indices 2116197 -- 2116696
ATAGCTAGAATGACCCTCGCAAATTGCAGACACTAATTTGTTAAGAATCCATCGAATTGAAACTT
TATCATTGTCATTGGCTGGAATTGGAATATCTACAAGATCTGGATCACAATTTGTATCGATTAAA
CAAATTGTCGGAATACCCAAAGTAATACATTCTCGAAGAGCTATATATTCTGTTTGCTGATCAAT
GATGATTACAATATCAGGTAACTCCTTCATATATTTGATTCCGCTGAGGTATCTTTGCAAAATAG
CTAATTTTCTCTTCAATATTGCTGCATCTCTTTTGCGAAGATACTTGAATTGGCCCGTATTTTCT
AATACTTTGAAGTCCCTTAACTTACGAAGTTTTGCTTGTGTAATGACCCAATTTGTTAACATACC
ACGAAACCATTTTTTATTAACATAATGACACCGAGCCCTTATTGCAGCCAACCCTACTGAATCCG
CAGCTTTTTCGGGTAATTGTTTAGTACCTACGATTCAAATGTTTT
Found at i:2116189 original size:13 final size:13
Alignment explanation
Indices: 2116171--2116197 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2116161 TCTTTATTGA
2116171 AATGATTCTTTAT
1 AATGATTCTTTAT
2116184 AATGATTCTTTAT
1 AATGATTCTTTAT
2116197 A
1 A
2116198 TAGCTAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (13 bp):
AATGATTCTTTAT
Left flanking sequence: Indices 2115671 -- 2116170
TTCCCGTTGTTATCTTTTCTAGGAGTGCCACTCTTGTTTTTTTTCATAAACAACATGGATTCTAT
TCATATTAAGAAATTGTTATTTAACCCTAACTAATTCGAATTGCTCGTTTCTCTTTAACGCAAAA
GAGAGTTGTTCTCTCTAACTTTTTCCCCGTATTTTGGAATCGTAGAAAAATATCTGTGAAACCAA
AAGTTATCAGTTCAAATCCAAGGAAGGCCTTTTTCTATTTTGAAATAGAAAAGGAGTTTTCTTGG
AAAGAGCCATAAGGCTATCCCCATCCTAAGGTGCTATACTACTAAATGAAAGGATCTTGTCAACG
TCCATAAAGAATCAAAGAATTCCCATTTCGTTATTTTGAGTAATTCAAGATCAAAAATAATTAGC
AACAAGGGTCAAATAATAATTGGATCAATATAATGTTGGCCAATAATCAAATTATTATTCAAAAT
ACTCGAATAAGATTCTTATTCAAGAATCTTATAATTCTTTATTGA
Right flanking sequence: Indices 2116198 -- 2116697
TAGCTAGAATGACCCTCGCAAATTGCAGACACTAATTTGTTAAGAATCCATCGAATTGAAACTTT
ATCATTGTCATTGGCTGGAATTGGAATATCTACAAGATCTGGATCACAATTTGTATCGATTAAAC
AAATTGTCGGAATACCCAAAGTAATACATTCTCGAAGAGCTATATATTCTGTTTGCTGATCAATG
ATGATTACAATATCAGGTAACTCCTTCATATATTTGATTCCGCTGAGGTATCTTTGCAAAATAGC
TAATTTTCTCTTCAATATTGCTGCATCTCTTTTGCGAAGATACTTGAATTGGCCCGTATTTTCTA
ATACTTTGAAGTCCCTTAACTTACGAAGTTTTGCTTGTGTAATGACCCAATTTGTTAACATACCA
CGAAACCATTTTTTATTAACATAATGACACCGAGCCCTTATTGCAGCCAACCCTACTGAATCCGC
AGCTTTTTCGGGTAATTGTTTAGTACCTACGATTCAAATGTTTTT
Found at i:2119607 original size:45 final size:45
Alignment explanation
Indices: 2119538--2119643 Score: 167
Period size: 45 Copynumber: 2.4 Consensus size: 45
2119528 TGTTCCTTGA
* * *
2119538 TCCTCATGGTATTCCTTAATTCGCTTTTCGTATTCCTTTTCGCGT
1 TCCTCATAGTATTCCTTAACTCGCTTTTCGCATTCCTTTTCGCGT
* *
2119583 TCCTCATAGTATTCCTTAACTCGCTTTTCGCGTTCCTTTTTGCGT
1 TCCTCATAGTATTCCTTAACTCGCTTTTCGCATTCCTTTTCGCGT
2119628 TCCTCATAGTATTCCT
1 TCCTCATAGTATTCCT
2119644 CTTCTTGCTC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.12, C:0.28, G:0.12, T:0.47
Consensus pattern (45 bp):
TCCTCATAGTATTCCTTAACTCGCTTTTCGCATTCCTTTTCGCGT
Left flanking sequence: Indices 2119038 -- 2119537
AATTGACAACTCTAAGTTGAAGATTGTCTTTTTCTTGCAAGAGATCCTGAGGGAAAAGCATTGCT
AAATCAATCTCATCAGGTATTTCATATGGAGTTATAGGTCGAACTGAAACAAAATACTTTTTCTT
GATAAGTGTGATTCCTTTAATATAGATCCAATCTTTCCATTTTTTGGATTTCTTAGAATTTTTTT
TTCCGGTTTCGCGTGGTATCAAAATATTGCTGTGCCTAAATATCTTATCTGTTTCCCTCGGAAAA
TGAATATCTCCAGAAAATATTTTGAGTTGAATATATTTTTTGGTTTTCTCCACTTGGACTAATCC
ACCGACTCGGCTTCTTATATCGAAAGTAAGCCGTGTATTTACTCCAATGATACTATTGTTCCGGA
CCTTTATAGAAGCGGATCTTCGTAAGGATAAGGTATGAACTTCTTCGGGAATGAAAAAAAACGAA
TCTACTTTCCTTTGGTATTCCGGGATCAATTCTTGTGTTCCTTGA
Right flanking sequence: Indices 2119644 -- 2120143
CTTCTTGCTCCATTCGCATTTGGTCTTCCAGACTCCATTCTTGTGTTTCTTGATGCTGACGCTCA
TTAAGTAGCCTTTGGATTTCCATTTCGCATTCCTTTTCGTATTCCGAGACAATTTCTTTCAATGT
TTCATCCATTTGCATTTCTTTTTCCATACTCGCTTTTTCCCTTTTGTGATCCTCCATCCACTTTT
GATGTTTTTGTTGATATTCAATCAACATTTGGGATAGCCGATCTTCGATTTCTCGACGCTCACTC
AACGTATGGTATTCCGGAACTTCCTCTATTCCTTGATCCTCAATCACAAACAAACCCTCTTTTTT
GATGATTGACTTCATCTCTATGGTTTCATATTGAATAATTCCTGAACTGTTTATTCTGTATCGTG
GATCATCAAAATAAGCAAGAATACTATTTCGATGGAAAATACCGTTTATGGGTATTTCCATTGAA
AGAGAAAAATAGGGTATTGGTTCTTTTTCCGATTCTTTATCGTAT
Found at i:2128376 original size:2 final size:2
Alignment explanation
Indices: 2128369--2128393 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2128359 AAGGAAGGGA
2128369 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
2128394 AGGGAAGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Left flanking sequence: Indices 2127869 -- 2128368
TTTAGACTCTGGCGCTTGGGTCATGGACTCTGCACGACGTGCACGTAGAATAGCAACAAGTGATC
TTTCCTGAATAAGTAGACTCTCATTTGAGTAGCGCACACGCCTATCAGCACGACCCGGCAATCCT
GTATTCAGAAGTAGGCATCAGGGCTTAATTGCAATTACTGGATACGCTGGAAAGGCCTATAGACT
GAGACAATGAAGAGGTATGCCAAATAAAGAAAGCACTCTAGAATAAAGAGGTGCATACCGGCACC
CTTGATTACGTGCCTAGCCACACCTGCTATCGAAGTAATTTGACCTATCCTATCATGTTTGTGCC
TTCGGGCTTAAGGAAGACTGGGCTGTTACAGAGAGCAATGCCTTTCTTTCCTTTCTATCTATAAC
AACCTGGCTCTGATACCAGATTGTCATGATCTGACAATGTATTTGAATGAATTTGCGCTAATTCG
AGCTAATTTTGGTGAATTGAAGAGAAGAAAAGGGGAAGGAAGGGA
Right flanking sequence: Indices 2128394 -- 2128893
AGGGAAGACAAGATCTGGATTTCAAAATGTTATTCAGCTTAATGAAAATTATTACATTCCCGCGT
TTATATCACTCAATCACAACAAATACAGTAATTCAGTAAAAGTGTCAAAATGTCAAAATAACATG
AATATGTCGGAGAAGAGACAGACTCTAACTAACTAACCAACTCACTGTTCCTCTCTCCATTATTA
TTCAATTGGACTTCTCCAGTTCCTGGACCCATACAGCATTTACTCAATGAAATGTGACCGTTTTT
CATCATTTAACGTGGCCTCCCAGCTGCAGAAACGATCTCTTCTGTTTTGATTCCTTCCTCTGCTG
TTTTGACTGAGTCAACGACCTCAACGGTCACCAGCTGATCTTCTGTAGCTCCATCTGCTGACATT
GCAGCCGTGTTTCCTGACAGTCCCCTCCCCATAAAATTTCCCTTGTCCTCAAGGGCGAAATTTGG
GTATTTCTCCTTCAGTACATCATAATCAATCCAGCTTGCATCTTC
Found at i:2131099 original size:19 final size:19
Alignment explanation
Indices: 2131075--2131114 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
2131065 GACAATATTC
2131075 AAGTAGTAACGGTTATCAT
1 AAGTAGTAACGGTTATCAT
* * *
2131094 AAGTAGTCACGTTTGTCAT
1 AAGTAGTAACGGTTATCAT
2131113 AA
1 AA
2131115 CAATTGCTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (19 bp):
AAGTAGTAACGGTTATCAT
Left flanking sequence: Indices 2130575 -- 2131074
AACCCTAACTATACAATGAACCATGGGGGCTAATTAGATAAAAGGTGATCACAGCCTTCGGTCTG
AAGACCCCTGACCATTCTTTCTGTTGATGTGGAGAACCCATAAGCTGCAAGCTTTTTATTAAAAG
GAGAGAGTCTGCTTTTTTGACTAGCCAGTTTCATTCCAGTCTTATAGCTGCAGGCTTAATACTAC
TTCTGTCTTTCTCAATGCAGTCCTTAATATGATATGCTTTTAGCGACTTCTATTCTCATTTTCTT
TGCTTTTCACTAGCACTAGTCCAAACGTTCTTTAAAAGACTTCACGCGGATTCATTTCCGTATTG
GGGTACCCCCTACAGGATGAAAAGAATGGCTCCTTTCCCGATAAAGGAATGGAAAGTAGTCCACA
GCCAGTAAATGTGTTAAGTTTCAGTGTTGTGGTGAAGAATGGAGGTCCTGTCTCAGATAAATAAG
CAAATGAAGAGGAAAAAACTGATCCACGAAAATCAGACAATATTC
Right flanking sequence: Indices 2131115 -- 2131614
CAATTGCTTCTTTCAATATGGCTTTTCTTCAACAACTCCGAGCTAGCTCATCTTCTTCCTTTCCA
TAAGTCTTGCCAACAAGCATTGACCTCACTCAGTTTCATCTCACTACTCATAAGTCAAGTGAGCT
TTAATAGGTCATCAAGCAAGCACCGGAATACATAGGTATCAAGAGATAGGACAGGCATTAAAGAA
AGAAGAACTTATCTATTGTATGAACTTGGTAGGTGTGTTAGGGAAAGCTTAGGGAGAAGGTAAAG
CGTTGCAAGGGAATTCATAGGAACTACGTAAGTGCCCGGGAAGAGGTATCCTTTAGTTGTTGGCA
TGTCTGAGCTTGTAAGTGAATGTCATAGTTGGGTTGATTTAGTTCGGTACTCCTTTTTACTTTAG
AGTAGAGCCATCTGTCATTCCTCTCATTGGCATTATGGAGTGAGTTCCGTAAGTAAGTGGCCTCT
CAGCAGAGTTCGATTGCTTTTCATTCTCTCATTTCCTGGGCTAAC
Found at i:2148196 original size:16 final size:16
Alignment explanation
Indices: 2148175--2148207 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
2148165 CCGTGCACTA
2148175 ACAGATCTAGCTCCTT
1 ACAGATCTAGCTCCTT
2148191 ACAGATCTAGCTCCTT
1 ACAGATCTAGCTCCTT
2148207 A
1 A
2148208 TGTTGTATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (16 bp):
ACAGATCTAGCTCCTT
Left flanking sequence: Indices 2147675 -- 2148174
GAACTGGTCATAAAAAATACAAGGATGCGTCTCATACAGTGTGGTGTACTCCGATAGATGGATAA
CTGACTACATATGAAAATAATGCAATAGAGAAAATGGAGAAAATTCTGCCAGGCTTTCGTTTTTA
TGGTTATTTGAATTGGTACTGATGGTTCAGAAAATCCGTTAGTTTTTTTTGATACCAATGGCATA
CTTTGTTATTGATCTCGTGTTTACTGAGATTCAAGCCAGTCTACCCGCACGCACCCTTTACTTTA
TGATTCTTGCATCTAGAAACTCCGCTAACTCTATTAGATATGCGGTACCTAGAAGTACATGACTA
GAACTATACACAGAAAATACCCGTAAATAAGGCCAATCCATAAAGAGGACCTCCACAGGCGGGCT
TTCGTGTGAATCTGCATATAGAATAGAATGCACTCAATAACCTGCAAAAAGTAAGCTGAGTCATC
TGCTGTCTTTAGTGGAGAGTATATGATTCCACGTGCCGTGCACTA
Right flanking sequence: Indices 2148208 -- 2148707
TGTTGTATGGGTCGATAAGCTCTTTGTTCGTAACATTAGTAGTTACGAACGAAAAGACTCTACGC
GCCTGATCTTTCTTTTTGTTGCTGAGGCTGGTTTGAAATGCTCAAAGAACTGATACCCTATAAAC
CACCCTGGGATTTGAATGACAGGACCCCACCCCTTCCTGCCTCCCGTTTTCTAACTCAAAATACA
AACTTCCATAGCATACTACTTCAAACCATAAACATCAAAGCAAAGCCTAGATTCCGCCTTAAGGT
TTGACCACCTTTCCCTTTGTTTCACTCTCTTCATTCTTATCCAACGTAGGCTTATCATGAATTAA
TTCTCTCTCATCGCTTGCTTTCGGTCCAACCGTCGATTCTCCTGTATCGGGCAGAGCAAAATTAG
CATACCCGCGTTTCCAGATTTCTTTCAACTCAAGCATACGTATTGCTTTAGCTTGTGAATAATTC
CAAAAGAGATGGAGAATTGGATAAAAGAGTAAACAAGGCAGGCTA
Found at i:2168521 original size:38 final size:38
Alignment explanation
Indices: 2168477--2168551 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
2168467 TGCTGATAAT
* *
2168477 CTTCCTTGTACGTATCTTCCTTCTATACTTCTCACTTC
1 CTTCCTTGTACGTACCCTCCTTCTATACTTCTCACTTC
2168515 CTTCCTTGTACGTACCCTCCTTCTATACTTCTCACTT
1 CTTCCTTGTACGTACCCTCCTTCTATACTTCTCACTT
2168552 AGTCGAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.13, C:0.36, G:0.05, T:0.45
Consensus pattern (38 bp):
CTTCCTTGTACGTACCCTCCTTCTATACTTCTCACTTC
Left flanking sequence: Indices 2167977 -- 2168476
AATCCAAACTCAAGCAAGAAAGAAAAGAAATAACACCAAAAGAAATAGAATGTTTCAACTCAAAA
AGCAACTACGTGAGCTCAGGATAAAGTAAGAAAAGAAAGAAACTATCAAAGAGAGAAAAATCCTT
TAATACCTTCCTTATGTGGCGGGGTAAGGTTTCCCGAGTGTTAGTTAAGCAAAGAACCCTAGTTT
TGATCCATTCAACCTCTATCTAATCAAGATTCTAGTCAAATCCGTTCCGTAAGAAAACATTACTT
ATTTCTTTTTCTCATCTCAAAGCTCTTTTAGCATAGAAGACAGAAGTAGCTACCTTCCTTCCTGA
AAGAGTAGTAGTTTGTCTCTATCACTCAGAGACTATGGGTGCAAACCGTTATGCTTTACATTCCA
GTAATTGAACAAAGTGATTGGACCTGTCATATGAACTCCCGTTTCATGGGAGGGTGCTACCATAC
TAACAATATGAATGGAGTAGTGCATCTCTATTCTATGCTGATAAT
Right flanking sequence: Indices 2168552 -- 2169051
AGTCGAAAGAGAGGGATGCCCGTCTTCAAAAGGTTAGTTAAGGCGAGTGTATGACCGCAAGGTAG
GTAATAAATCACCACTTTTCAGGAGTAGGATCAATTAGGAGTTTGATGAAGCACAACAGATGTGA
CAAGATTTCTTATTGATGGTTTAGGTCACGAGTACAATGTCAAGTCAACGTGTAGAAGAATCCCC
GGGGTCGGTAGCCACACATAGGAAAAGCATTACCAGCATTACATCAGTGCAGACAGAAGGAGGCA
ATTGGGTATCCTCATAAGAAGAGGTGGTCGAATATAGTAGTTTCTTCGAACCTCTGTGTCAGACT
GATTTCAAGGAAGAACCGTACCTGATCCGTGTGGGGTTCTGCTAATTCCTTCGCAATTCTAGATC
CCCTTGAATGTGATTCCTTGAAAGCGAGGAGAGCTAGCTGAAATAATCTACTTTTTGAGGCTCTC
CGCGTGAGCCCATGCTGGGTACTCCCTATCTTCTCATTCCACTCA
Found at i:2215537 original size:16 final size:16
Alignment explanation
Indices: 2215516--2215546 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2215506 TAATTCAGAC
2215516 ATATACAGACACAAGA
1 ATATACAGACACAAGA
*
2215532 ATATACATACACAAG
1 ATATACAGACACAAG
2215547 GTTTTCTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.19, G:0.10, T:0.16
Consensus pattern (16 bp):
ATATACAGACACAAGA
Left flanking sequence: Indices 2215016 -- 2215515
TGGGAGTAAAATGCTTCTAGAGCAAAAGTGTGCAGTACAGGATTTCATTCAGTACTATCTACCTT
TACTTTACTTATATGATATATGAATGCTTCTGGGTCTACACCGTTGGCTCCGACTTGAACGGATT
AATGAAAAGGAAATGCTGACCTGGGGGCAGGCATATCTTGCCCCACCTATATAATTGCTACTTTG
AACATAATGGCTACTATATAATTGCTACTTTGAACCAGTCTCTTCGGTCTGACTGACCCTTTGTA
CCATCAAGATCCAGAACAAGCAAAATAGTCAATCCACCACTTAGGATAGTAACCTGTAGACAAGC
CCACCTAGTATCTCATTAAATGCATTGTCAGGGGCCGGCCCGCCGCCCGGATCATAAACTGGCAA
ACTGCAGGAGAAGCGTATAAAAGAAAACCTGGATCTCAATACCCACTTTCAAAGTGGACTAAAAT
AAACACAGCATAGGATAATACTACAACCAGGTGCGTAATTCAGAC
Right flanking sequence: Indices 2215547 -- 2216046
GTTTTCTATAAGAACTCTTTTTCAGAACCGGTGCATAAGAAGGTATGCCGGTGGATAAGAAGGCA
TTGGAGAAAAGGGGAACGCACTCCTTTGTATTGCTTCTTTTGCCTACCTATACCGGGTTGGTCCA
AAATAGGAGAAATCAAGTGTGGGCTCGCTAAGCTTGTCAGTTTGTTCACGAATACGTGCAGATGA
AAGTATGCGGCACAGATAGATGGAGATTCCCACTCTTATCTACTTACTCAATCTATTATTATCTA
ATATGAAATGAAACCCAATCGGAGGAATTTGGCCGGTAAGCGCGACTGACACATTTTACGCATAG
ATGGTTTGATCCTGTACTCAAATGGTATTTTACTTAGTATTTCACAGTGGGGATGGAGACTGTTC
AAGAGCACGCATCCGTTCCGTCTTGGCGCCTTGGTTCTACCAACAAAAGGCAGAAGTGGAATGTT
TAGCAGTTAGCCCTTCCTTCCTTTGAGACCGTGCTAGAGGAAAAG
Done.