123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_068215
Parameters: 2 7 7 80 10 50 500
Length:  2222920

Tables:   1   2   

This is table  2  of  2  ( 201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1280473--1280511	19	2.0	20	90	5	62	53	10	20	15	1.70
1293248--1293289	21	2.0	21	95	0	75	30	4	33	30	1.78
1294940--1294983	21	2.2	20	83	4	52	11	50	2	36	1.51
1303092--1303162	24	3.0	24	85	0	106	28	18	26	26	1.98
1303974--1304059	24	3.6	23	85	6	118	31	16	24	27	1.96
1335385--1335431	20	2.2	21	77	14	51	44	21	17	17	1.86
1335394--1335434	20	2.0	20	95	0	73	39	24	14	21	1.91
1343744--1343805	29	2.1	29	84	0	79	14	30	24	30	1.95
1344243--1344287	23	2.0	23	91	4	74	15	40	8	35	1.79
1345487--1345522	18	2.0	18	88	0	54	11	36	13	38	1.81
1347485--1347517	16	2.1	16	100	0	66	36	18	18	27	1.94
1365619--1365663	21	2.1	21	91	0	72	20	24	8	46	1.78
1368072--1368118	21	2.3	21	96	3	87	10	38	19	31	1.86
1388153--1388213	30	2.0	30	100	0	122	29	27	6	36	1.82
1409507--1409548	22	1.9	22	95	0	75	23	26	9	40	1.85
1414580--1414610	6	5.2	6	100	0	62	35	16	0	48	1.46
1417326--1417411	41	2.1	41	91	2	136	24	12	26	36	1.92
1423942--1423972	16	1.9	16	100	0	62	38	12	29	19	1.89
1424298--1424339	21	2.0	21	85	0	57	35	21	14	28	1.92
1454922--1455060	68	2.1	67	90	5	219	17	34	27	20	1.95
1472098--1472160	6	9.5	6	75	17	54	77	3	19	0	0.90
1472098--1472160	21	3.2	19	80	14	74	77	3	19	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1472098--1472160	27	2.3	27	81	13	76	77	3	19	0	0.90
1472115--1472161	10	4.4	11	77	22	55	76	2	21	0	0.89
1489562--1489597	18	2.0	18	94	0	63	25	19	27	27	1.99
1527427--1527476	25	2.0	25	100	0	100	52	8	20	20	1.71
1536172--1536248	38	2.0	38	97	0	145	29	25	14	29	1.95
1541421--1541470	25	2.0	25	96	0	91	26	24	24	26	2.00
1553633--1553681	23	2.1	24	85	7	66	36	14	20	28	1.92
1556753--1556784	16	2.0	16	93	0	55	43	28	0	28	1.55
1610581--1610611	16	1.9	16	93	0	53	16	29	16	38	1.90
1616725--1616754	15	2.0	15	100	0	60	46	20	13	20	1.83
1628311--1628367	29	2.0	29	89	6	89	43	15	19	21	1.87
1635010--1635038	15	1.9	15	100	0	58	13	20	31	34	1.92
1648532--1648556	12	2.1	12	100	0	50	52	24	24	0	1.48
1705766--1705801	18	2.0	18	94	0	63	25	19	27	27	1.99
1712255--1712284	12	2.5	12	100	0	60	66	26	6	0	1.16
1731251--1731413	31	5.3	31	100	0	326	39	12	29	18	1.88
1741423--1741456	17	2.0	17	94	0	59	26	26	11	35	1.91
1743608--1743641	16	2.1	16	94	0	59	58	20	5	14	1.57
1752735--1752759	12	2.1	12	100	0	50	16	20	24	40	1.91
1756462--1756514	22	2.4	22	81	12	56	39	24	18	16	1.91
1763155--1763188	16	2.1	16	94	0	59	26	29	0	44	1.55
1773160--1773188	12	2.3	13	94	5	51	44	6	27	20	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775164--1775205	21	2.0	21	95	0	75	21	14	9	54	1.68
1778406--1778464	24	2.5	24	85	0	73	50	6	23	18	1.70
1791526--1791571	22	2.1	22	91	0	74	23	23	10	41	1.86
1819345--1819387	22	2.0	22	90	0	68	34	27	23	13	1.93
1829779--1829833	27	2.0	27	96	0	101	29	21	14	34	1.93
1838362--1838391	15	2.0	15	93	0	51	63	6	20	10	1.47
1853581--1853610	15	2.0	15	93	0	51	43	20	10	26	1.83
1858249--1858321	21	3.5	21	72	7	67	34	24	8	32	1.85
1858714--1858795	27	3.0	27	87	1	83	47	26	12	13	1.78
1858714--1858898	54	3.4	54	81	1	147	43	27	14	14	1.84
1858748--1858869	27	4.5	27	92	0	181	40	26	16	16	1.89
1866310--1866361	26	2.0	26	88	0	77	42	17	25	15	1.88
1905645--1905706	31	2.0	31	93	0	106	24	30	17	27	1.97
1906311--1906353	21	2.0	21	95	0	77	16	13	9	60	1.58
1906643--1906680	20	1.9	20	88	0	58	47	10	28	13	1.76
1907763--1907798	18	2.0	18	100	0	72	55	5	16	22	1.62
1953549--1953610	30	2.0	31	93	3	108	33	9	17	38	1.83
1981839--1982012	70	2.5	71	76	4	174	32	24	17	24	1.97
1992261--1992323	29	2.2	29	82	5	74	26	17	33	22	1.96
2011437--2011485	24	2.0	24	92	7	82	24	26	12	36	1.91
2012849--2012893	20	2.2	20	100	0	90	33	8	33	24	1.86
2019164--2019207	21	2.1	21	95	0	79	36	15	27	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2020395--2020432	19	2.0	19	89	0	58	23	28	7	39	1.83
2026740--2026771	16	2.0	16	93	0	55	25	21	9	43	1.82
2056347--2056400	28	1.9	28	84	0	72	20	29	16	33	1.95
2084005--2084038	17	2.0	17	100	0	68	47	23	17	11	1.81
2108874--2108948	14	4.8	14	70	28	53	40	8	44	8	1.63
2108874--2108983	50	2.2	49	95	1	193	37	9	44	9	1.68
2113344--2113395	26	2.0	26	88	7	79	38	19	9	32	1.84
2116159--2116196	13	2.6	14	84	16	51	28	7	7	55	1.57
2116171--2116197	13	2.1	13	100	0	54	33	7	7	51	1.58
2119538--2119643	45	2.4	45	91	0	167	12	28	12	47	1.77
2128369--2128393	2	12.5	2	100	0	50	52	0	48	0	1.00
2131075--2131114	19	2.1	19	85	0	53	35	12	20	32	1.90
2148175--2148207	16	2.1	16	100	0	66	27	30	12	30	1.92
2168477--2168551	38	2.0	38	94	0	132	13	36	5	45	1.66
2215516--2215546	16	1.9	16	93	0	53	54	19	9	16	1.68

Tables:   1   2

The End!