123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_067639
Parameters: 2 7 7 80 10 50 500
Length:  949915

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14373--14407	18	1.9	18	88	0	52	22	20	20	37	1.95
29111--29150	20	2.0	20	90	0	62	37	22	22	17	1.94
36824--36856	15	2.1	16	88	5	50	24	27	30	18	1.98
56625--56679	21	2.6	21	79	0	65	12	23	29	34	1.92
65664--65704	19	2.2	19	95	0	73	34	17	14	34	1.90
79336--79392	30	1.9	30	88	0	87	12	33	5	49	1.63
83134--83166	16	1.9	18	88	11	52	51	21	12	15	1.75
99464--99519	29	1.9	29	88	0	85	33	23	25	17	1.96
112053--112124	24	3.0	24	97	0	135	16	29	48	5	1.69
162996--163059	29	2.2	30	83	13	80	42	21	20	15	1.89
190660--190709	22	2.3	22	79	6	57	10	18	0	72	1.12
218325--218362	18	2.1	18	90	0	58	47	13	28	10	1.76
219592--219626	17	2.0	18	94	5	63	22	28	17	31	1.96
219741--219817	38	2.0	39	82	5	93	35	29	6	28	1.82
219890--219941	26	2.0	26	88	0	77	26	32	7	32	1.85
319592--319626	18	1.9	18	88	0	52	22	20	20	37	1.95
334330--334369	20	2.0	20	90	0	62	37	22	22	17	1.94
342043--342075	15	2.1	16	88	5	50	24	27	30	18	1.98
361844--361898	21	2.6	21	79	0	65	12	23	29	34	1.92
370883--370923	19	2.2	19	95	0	73	34	17	14	34	1.90
384555--384611	30	1.9	30	88	0	87	12	33	5	49	1.63
388353--388385	16	1.9	18	88	11	52	51	21	12	15	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404683--404738	29	1.9	29	88	0	85	33	23	25	17	1.96
417272--417343	24	3.0	24	97	0	135	16	29	48	5	1.69
507571--507612	15	2.8	15	81	0	57	19	26	40	14	1.89
509465--509503	20	2.0	20	84	0	51	48	15	5	30	1.66
514880--514904	5	5.0	5	100	0	50	40	0	20	40	1.52
553363--553414	26	2.0	26	92	0	86	25	19	21	34	1.96
582401--582438	17	2.2	18	85	4	51	5	36	15	42	1.70
595401--595425	5	5.0	5	100	0	50	40	20	0	40	1.52
602693--602738	15	3.1	15	80	0	65	13	43	23	19	1.86
658362--658394	15	2.4	14	90	10	50	33	12	33	21	1.90
677405--677456	27	1.9	27	88	7	79	34	19	36	9	1.84
752826--752866	22	1.9	21	90	5	64	29	17	9	43	1.80
752826--752876	22	2.3	22	83	10	59	29	13	11	45	1.79
804917--804954	17	2.2	18	85	4	51	5	36	15	42	1.70
888020--888058	14	2.7	14	82	17	53	28	17	0	53	1.44
898151--898229	39	2.0	39	97	0	149	31	18	27	21	1.97

Tables:   1

The End!