Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_066895
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 501598
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Found at i:25574 original size:40 final size:40
Alignment explanation
Indices: 25530--25617 Score: 167
Period size: 40 Copynumber: 2.2 Consensus size: 40
25520 CCTTATCTTC
*
25530 CATAACCTGTGAATAGAAAGAAGATTCGTGTCGGTCTTGG
1 CATAAACTGTGAATAGAAAGAAGATTCGTGTCGGTCTTGG
25570 CATAAACTGTGAATAGAAAGAAGATTCGTGTCGGTCTTGG
1 CATAAACTGTGAATAGAAAGAAGATTCGTGTCGGTCTTGG
25610 CATAAACT
1 CATAAACT
25618 ACGCAAGACT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (40 bp):
CATAAACTGTGAATAGAAAGAAGATTCGTGTCGGTCTTGG
Left flanking sequence: Indices 25030 -- 25529
ATAGTAAAGAGTGGTAGAGATCGAGATGTGGAACAAATAAATAAGTAATTAAAGAGGAACTCCAA
CCTACAACTAGACTTTGTCTTTCACACTCCATAGCTCTAGCTCTAAGACGAGGATTGGCTTATTA
ACCCTCCAAGGTGCCCGTGGACGGAGTCCCTACGACTTACCCTAAACTAGTCACTCTTGACAGCT
TCTGTGAAGCCCTCCCTTTGAAATTAATCGATCACTACCGTAGACAAGCCTTTGAATTCCTACGA
CGGACCTGGTATCATAACTATAGAATGCACTCCTTCGACGCTCAAACCGCCCTCATACCACTCCA
TCCTATCTTAAAGACTATTCAATCTTTCCCTTAGAAGGGCGTTTTGTTTTTCAAGTTCCTCACTT
CGCCTTTCTAAAGAGAGAAATTCCATCCATTCTTGCCTTCTTTCGTTTAAATCAATTTCTTTCTG
CCGTTGTTGCTCCCAAAACCCCTGGAAAGCATCCGCCTTATCTTC
Right flanking sequence: Indices 25618 -- 26117
ACGCAAGACTTCACAGAGTGCTGAATGATAAAAGTCTATGGGTTCAAGGTACACCCGAAGGATAA
GATCTAGATCGGAGTCCGGAATAAATAGAAGAGGGTCCTGATGAGAAAAAAAAATGACCTTATTT
ATATAGGTCTATAATTTGTTCGCGAGTCGCTGTACAAAGTGGAATATTCATAAAGGACTGAAATA
TCGAAGAGAATTCAGACGGTGGGCAGAGGCGTAATCGCTCGTGAACAAATTCAACCCACTCAGGA
TCCTGGTAGGGTTGAGAGAGAGAAAACTCCAGGAGTGAAGATTCAATTGGCAAAACGTTAAAGAC
AAGAGGAGAGAACATAAGATTGTACATATTGAAAAGTGAGTATAAAACAATGAGAATACCCCGAA
AAAAAAGAAAAACGCGGAGGAAAATATAGGCAAGGCGAAATAAGAGAGAAGGAAGACCGAGTAGG
ATCAAAGAAACTAGCGGACTTATCACTAAATAGATAGAAATAGGT
Found at i:32229 original size:18 final size:18
Alignment explanation
Indices: 32202--32237 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32192 TCAAAAAGAG
* *
32202 TCAATGGCAGCGGACGCA
1 TCAATAGCAGCAGACGCA
32220 TCAATAGCAGCAGACGCA
1 TCAATAGCAGCAGACGCA
32238 GAGGAAGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.28, G:0.28, T:0.11
Consensus pattern (18 bp):
TCAATAGCAGCAGACGCA
Left flanking sequence: Indices 31702 -- 32201
AGAAGGCTACGCACCTTGCCTAGCCACAACATCTTTCGCATCGAGAAAGAGTAAGAATCAATCTC
CTCGCTGATTCAACAATCGCTATTCTTTTTCAACGAAAACAATCAGCAAGAGTCGACAAGAGAAC
GAGAGCGGATGAAATAGAAGCAGAGGCGTGAAAAGCTAAAGAAAAGACCTCCCTAGAGCTAGATT
CAACTTCCCCCGCGGGCTTGACCGAGGAAAGAAAATCGAAGTCAGTGTGTTAAGCAATGTGGCAT
TTTCATTTCACTTCTTGGCCTGGACACTCTCTTCGTCTAAGGTCTTGGCTTGGTCACTCTATTAA
GCTTTCCCATCTCACAAGGCAAGTCTATTGAATGGGGTACGAAAGATTGCTATTCAAAGCATCGT
TAAGAGTTCTGCCTTCTAGGGAGTAGTCAAGATAAGATGACTCTGATCTTTCCTTTCCTTCTATG
GAGCCGGATGTGAGCTTCTCGCCTACTGATCTTACTCAAAAAGAG
Right flanking sequence: Indices 32238 -- 32737
GAGGAAGAAATCCTTGCTCTTCGGGCTAAGATGCTGACTTTGCCGTGGAAAGAGTAGTGAGAGGA
AAGCCTTGACCTTCCCTTGTTCTACCCTTCGAACTCGGAGATTGAATAGGAAGATAACTCTATGC
AGCGACAGAGGCAAGATCTCTATATGTTGATAGATACCCGAGAGACTGAGTCCTTTCCTTAAGGC
ATGCCCCTACTCAACTTCCTATTGCAAATGCCAAAGCACCAAGAGCGGCAACTCCAAGTTCTTTC
ATACCCTCCGCTCAGGGAAAAGAGCTAACTGCTGCGGGAGAGGCGACTTCTCTTTCACTTCATTC
ACGGGAGACCTACCAAATCTGCGCATTTCTATAAGTCATGGTCACATGTCTTGTGAACATTCAAC
CATCAAGAGTGAAGGTCAAAGGAATGCTTTTCTCACCGGAATTTCTTCTTTTCTTTTTTCTTTGG
AACCCGAGCTAATTCTTTTAGATCTTCTCCCTTCTCTGCTTCCTA
Found at i:88059 original size:15 final size:15
Alignment explanation
Indices: 88039--88068 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
88029 CGTAAAGTTG
88039 ATTGATATCAAGAAT
1 ATTGATATCAAGAAT
*
88054 ATTGATATTAAGAAT
1 ATTGATATCAAGAAT
88069 TTATCTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.13, T:0.37
Consensus pattern (15 bp):
ATTGATATCAAGAAT
Left flanking sequence: Indices 87539 -- 88038
TTCATAACAAAGGAAGAACCAGAATCAGGGGGTTTTACTTATAAAATGGGCTTGCATACAACAAA
TGCTTCAAAGCATACTTTTGTAAAAAAAGCAAGAAATCTTTTTTTCTGAGTTCCCGGGGAAAGAG
TGTCAAGTCCAATCTGTAAAAGGAGTGGGGACTTGGTCAAGGAGCTTGATTGGGAAAAGGCAAAA
ACCCCTTATTATATTCGGTGAATTCAATATTGAACAAGTAATTGAATTTGCTCGGGCAAGCCGGC
AGCACAAAAAAGCCCAAAAGGTTTCGGATGGGCCCGGGCCCGACAAAGCCAAAAGGAAGAGGGGA
AGGCCCAAGAAAGCGCTTTCGATTAAAGAAACATCTCTTCCGTTGGATAGAACGTTCAATTCTTT
TTGGAAGATATTTTCACCCTTCCTAAAATACTTTTTAAACTTCCTTTCTCCTTAAAATTACAATT
AAAGCCATTTTTTTTTTGGCTTTATACTTATATATCGTAAAGTTG
Right flanking sequence: Indices 88069 -- 88568
TTATCTTTTAACGATGTCCTCAATTTTTTATTAAGAAAGGAGCTGCCATTAGTTAGCTGCAAGGG
ATGAGCGTTAGAAGCATGCGAAGGGATAGGTTTGGAATAAGTCTTGTATGAGCCCTTTAATCGAG
TCCCTCTTCTTTAATAGGCGCTTTCCGGTAGAATAGTTCTTTGTTTAGATGGCTATTTTATGATT
TCTAATATCGTAGATGGCTATCCTTTAATGCTTTTGAGAGGTCCGGTCTTACTTGAGGGTATTAC
TGTGTTCTTCCGCGCTAGTCGCTGCTCGGCCTTTTGCTTCTTCCGCAGCTTGTTCCCTTGCTTGG
TTACGTGTAGTCCCCTCAGTAGGCCCCCCCTTATTCATTGTGAGACCTGTTAAAATTCCAACTAT
GACAATCCGTTTTTCTGTTCGGTACGTCTTTAGCCGTGGTGTATTGCCGAAATAGATTTGATATT
GAAGCCCCGGGCACGCATTTTTTTTAGTTCGTCAACTTCTTTTTT
Found at i:99930 original size:24 final size:24
Alignment explanation
Indices: 99903--99950 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
99893 AGTAGGTAGT
99903 TCAATCCTTTTGATTCTTCTCTTC
1 TCAATCCTTTTGATTCTTCTCTTC
99927 TCAATCCTTTTGATTCTTCTCTTC
1 TCAATCCTTTTGATTCTTCTCTTC
99951 ATAGTAAACG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.29, G:0.04, T:0.54
Consensus pattern (24 bp):
TCAATCCTTTTGATTCTTCTCTTC
Left flanking sequence: Indices 99403 -- 99902
ATATATTGGTTTAATCACAGACCGCTAAGAGTAAGAGCTGATTCTATCACTGGATTCTGTAAGAG
TAACAGCGGATTCGTGCACACCAGCTTTTAGATGAGAGAAAGCCTGCTTTATAGAATAGCTTTCT
TTCTATTTATTAGAATACGATACTAAAGACTCAAAAAATGGTACAAGAATTCGTCGGGCGGAATG
AAAAAGAAAACATTGATTGAGATCAATTGAAGGAACACCAGCTCATGAACTTTGCCAGTCGAATG
GGCAGAACCTGACTCATCAGAAGAGCTTCCGCCACCAATCAAACCAGAATGAAAAATGGATATGT
CCCTATGAGCGACTACGCCGATCTTTATATGTTTTGGCCACGCCCGTTTCCGCTCCGAAGAGGAA
GGTTTGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACA
GCTTTTAGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAGT
Right flanking sequence: Indices 99951 -- 100450
ATAGTAAACGGATGGGGGGGTGCGGAGCAATAGGTCGAATTACTATATAAATAAGAGTTGTAAAC
TATAGGACTTCTTGTTTGAGTAGGAAGATTTCGGTTTTTATCGTTCCTTCTCTTCGATAAGAATA
GGGATTTGAAATGATACAAATTCCTCTTCATTCTGTTGTGCTCAGCGAAGGAACTGCCTAAGCAT
ACTTTTTCGGATCCAAACTTCTTTGTTCTTGACAAGTCTTCTTCTTGCATAGAAGAACGCAACCG
TTGCAAAAACCGGGATTTTAGTAGTAAGCGGCATCCCCTCTTAGTTTTGAGTAGGTGGAACCATT
CAGTTTTGGTTCTTCTCCACATTCTTACCGGGTGATCAAGGAATTTGCCTATGATTTTTTCAACT
GATATTTCGATATAGAAAGATCTCCTTATTTCTTCACCGCGGATTCTCGCGTTATTTTCTTGAAA
AGATATTAAATCACCGTGGGAAAGTTTCAAATGATTAATTTTTAC
Found at i:111679 original size:17 final size:17
Alignment explanation
Indices: 111657--111692 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
111647 GGGAAGATAG
111657 AGAAAGAGAGACAAGAA
1 AGAAAGAGAGACAAGAA
* *
111674 AGAAAGAGATACAGGAA
1 AGAAAGAGAGACAAGAA
111691 AG
1 AG
111693 CTAAGGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.06, G:0.31, T:0.03
Consensus pattern (17 bp):
AGAAAGAGAGACAAGAA
Left flanking sequence: Indices 111157 -- 111656
GACTTTATCCAGAAACAACTCAATCAATCAATTACCTTATTTAAGATACGCCCAAATCCATTCAA
CCAGCCACTCAAGGGTTTGGAGTTACCATTTCCGCTATTCCTGCCAAGGAATAGAGTAAAGGGAC
TACCGATACCCCTTCGCGTTCGCTTTGGTTTAGAGTAATCGCTTGTTCCTTCAGTCTTCAGAGGT
AAGCTCTTTTCCCTTCTTCCTAATGGACTACGAGGACCCTAGGATTTAGGACTCTTATAAGGAAG
GATTATTGGCCTACTGCTGCCTTACCACTAGCTTAACACTAGCAGCACAGGCTTACCTATTAATC
ACAGACCCCCTTCCTTACTTGCTTACTTCCTTGCTTGCCTGGAGAGAAAGAATCTTAGAAAGAAA
GGATCCCCTACTTACTTAGTACAAGGAAGGGAAAGACTTACTAAAAGACCAAAGACTGGCTTCCT
TACTGTCTTGGCTCCTAGGACTTCTTACAAGGAATGGGAAGATAG
Right flanking sequence: Indices 111693 -- 112192
CTAAGGATATAACGAAGGGCGAAAGGGAGCACAGAAAGGCGCAATACCAAAGCTTTTTTGAAAGA
GAAGAATGCGCCATAGGTTTCTTCCTGCTTTGCTTTGGGAAGGGGCATTGAAAGAACACAGACAT
AGTGGAAATGCTCCTAGACTAGAGAAGGTTCCCTCGTAAGTCTGATCCTCTCAACTCATACTACA
GCAGGGAAATCTACTTTTCTGGACAGGGTCTTCCTTCTCGGAGAATAGGTCTACTATGCTGAAGC
AGAAGGGAACAGGATGCTTATTTAAATGTCGATGAGACTAGTCAGGATGCTCCCTGTAGTACATT
CCCAGATCTGAGCTACCTGGATCAACCCACCAATTAGTACAGTTCGTCAGTGAGTACGTGGGAAT
AGCCCAGTAATGAATAGATATATCAGTCACCGGGTAAAGAAGCGAGGCGAGGCGTACCATCTACC
TAGGGCCTTTGCTCCCGCTTTCTTGACCACTGACAGGAATACCTA
Found at i:130756 original size:24 final size:24
Alignment explanation
Indices: 130714--130762 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
130704 ATTCGGATTC
* *
130714 GTTACTTGGGGCTGATGAGGATGA
1 GTTACTTCGGGCTCATGAGGATGA
* *
130738 GTTACTTCGGGCTCCTGAGGGTGA
1 GTTACTTCGGGCTCATGAGGATGA
130762 G
1 G
130763 GAATCCGTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.16, C:0.14, G:0.41, T:0.29
Consensus pattern (24 bp):
GTTACTTCGGGCTCATGAGGATGA
Left flanking sequence: Indices 130214 -- 130713
CTCTAAGTGTAAATTGTCAGTTTCATCCTCTTTATGAGCCTGAGATCATAATCATATGGGTCAAC
AATTCTCATTTCTTAGTTACAGAAAGCCCTTCTCAAGGAAGTAAGCCAAAAGCCACTCATCTGAG
CCAGCGGATTCTCATTCTGCTGTGCCGGTGCGCAAAGCAAGCACGCTTAGACTGCGATGTGCAAT
CTTTGGTCTGCCTATCATTGTCCATTAAGGGCTGACTCCGCTAGGCAAGAGGACCACTACTGGGA
TTATTCAACTACTAACTGATGACCAGGGGACTACTCTGCTTCTTCCACTACTGATATTGACCGAC
CTGTTGAGAGGATAGCAGCAGGAGAAAGAAAAAAAAGAAGTAGAGTTAGGTTCTGTTCTAGTATG
TAAGCATCTCTTTCCTCGGTCGATTCGTCTGCTCATTCAGCGTATGATTCTTATCCAACTTCCGA
TAAGTCTTATGAAACGAATTCGGCTGGAGATAGGCATTCGGATTC
Right flanking sequence: Indices 130763 -- 131262
GAATCCGTTGTTTCGGGATAAACTTGATATGTTAGTTCGGCCTCGGCTTCTTAGGATGATGCCTG
TGCAATGTATGATCCATCGGATTCTTTTTATTCTATTCTCGGTGCGTTGTTCTTCAGCGAATGAA
AGAAACCGCTGATTCCAAAGTTCCTTCATCAGATTTGGGTGCTTTTGAAAGAGCTGCTTCTGCGA
ATGACTCAACTGAGACTACTCAAAAATTTCCCACATGGAAGGAAATGGGATTTTTGAGAAAAGGG
GTTGGGAACCATCGAAGGACTAGCAACCTGACAGTCCTAAGCAACCTTGAACCAACAACGTTACA
TATACCATACTGCTATAGAAGACATGAGTACCAGTTAGACTACGGGACGCGTACACCCGAAATTG
GTGAGCTACTTACTGCCCCTTAAGTCAAGAGAATAATAGTACTTTCAGCAAAGGATATCGTAACT
ATGGCGAATACGTTTTTCTTGCTTTCCACATACCCGGAATGCGAA
Found at i:145775 original size:8 final size:8
Alignment explanation
Indices: 145762--145791 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
145752 AAAAAAATAT
145762 ATATATAA
1 ATATATAA
145770 ATATATAA
1 ATATATAA
145778 ATATA-AA
1 ATATATAA
145785 ATATATA
1 ATATATA
145792 TTACCTTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATATATAA
Left flanking sequence: Indices 145262 -- 145761
GGTGAGAGCAATAATAAAAAAAGCAGCGGAAGATCCTGCAGTAGTATATTCGGTTGTTTGCGGTG
GAATAGAAAAAAGCGTCCGGGCCAGTAGATCCAGAGCAAATAGGCGTTGACTTAGTTGCTTTTGC
AGTTGATTTTCATCCCGATGTTGATCCAACGCAACTTACCGGTGATAGTCGCAGCACCAGGAGCT
TTCAAGGGAGGCAGACATGTATAGATAGTAGCTGAAGTGGCATACCTTCCGGATCGAGGGTCCCA
CCCGGTAAACACCATACAGGCAAAATACCAGCGGGGGGAGGAGGCCCTTATCACTCAAGCTCAAG
CATTTACTTTTCTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACC
TACTTGGTTTAGGTAAATATCTCATGCGTTCCCCGACTGGAGAGGTCATTTTGGAGTAGAAACTA
TGCGCTTTTCAAAAATGGTCGGAAGAACGGGTTTCAAAAAAATAT
Right flanking sequence: Indices 145792 -- 146291
TTACCTTACCGGCTGGCCGCAAAAAAAAACAAAACGGGATTGGATTTCCACTCATAAGGAAGGAA
GGTTAGATACCTTTGACAGGGTTGTATTTTTGGTTGAAATGGGATGGTGTTCAAACTCCCGAAAT
GCAGTCTAGACAGTGGGCCCTCCCCTTTCTGACTAGACTGACTCGGGGAAGGGTCAATCTCCTCC
GGAGCATGCTGCACAGCCACTCATTTGTCCTGACTAAATAGTAGAATCTATCTCTCAGCGATTCT
TTTCTCCGCCAAAAACCCCTTCCCAACCAGCCCGCCCGATTTCTTTTGTAAGATCAGCTAATTTA
AAGGGGTTAATCTGGTCCGAAGTTGTCGGAACGAATCGTTTTGCTTTATCAAACAAAGCTTTATT
AGGGGGTCTTGGTTGGCCCCCCTATTTTCAACCATTATAGCTGGCGTCGACCCGCTTTGCGATAC
GGACGAACACGAAGAAGAACGCAGGCAGCGAAAATGCCAAAAGAG
Found at i:207339 original size:27 final size:27
Alignment explanation
Indices: 207309--207362 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
207299 GGCAGGCTCC
207309 TCAGCAGGAGGAAGATTCAGATCAATA
1 TCAGCAGGAGGAAGATTCAGATCAATA
207336 TCAGCAGGAGGAAGATTCAGATCAATA
1 TCAGCAGGAGGAAGATTCAGATCAATA
207363 GGGGGTCGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.19
Consensus pattern (27 bp):
TCAGCAGGAGGAAGATTCAGATCAATA
Left flanking sequence: Indices 206809 -- 207308
CCACCACTCATATGACGTTACGCGCTATGAGTTTCATCGAAAAAGAGTACTGGGCCCTATGTCGT
TCTCTACTCATAGGACTCGACTGACCGAGCTGCTCGACAGGAAAGACTTAATATTTGAAAGTGCC
TTTTTCCTGAAAATTCTTTCTTATTTTGAGCATTTTCCTCAAAGTAGGTGAATCGGGTTTGCTCA
AGTCATTGAGCATCTGTCGCAGACGGTGAGGCGCGTAGTCCGCTTGTTCCCGATTTGTCAGAATC
GAATCAGTAATGATTCTATATCTCTGATCTCGCCAAAAGTAAGAGTGGTCGGGATCCAATTCCGG
CATACGGTCCACGATCTGCCTTTTCAGCTGAGCGGTCTCCCGCGCTTGCTTTAAAAGCAGATCCG
GATTCGAACCCGGAGGCGCCTTGGCAACTAAGCGAGCCAAAAGATGCTCTTCCATCTGACGACGT
AGCTCCACCTCTTCCTGCGGCTGGTCCGAGGTTGAGGCAGGCTCC
Right flanking sequence: Indices 207363 -- 207862
GGGGGTCGCCCCGAAGAGCTAGCACCCCTTCCTCCGACGGAAAGAGGCAGCCCATCCATGACAGA
AATCAAAAATGCGATCCATGGAACAAAGACCGCAGCTGCCCAAGTAAGACTCCATTCGAAAAGCA
ATCTACTCATAAAAAGGAAGAGGAAAGTGAAACAGAACTTCAAAAAGAACTTTGGCACTTTAGTT
TTCTTCATCATTATTGGTTCATAAAATCGAAGAGTTCGTTTTTTTTTCAAAACGAACCTAACCGC
CACACGTGAGGAAAGGGATTCGAACCCTTCTCGAGTCTCCCCGGATGCTCCAACAACCCCTCGAT
TCCTGCCGCTTTCAGTGAGTGTAAGCTTGATGATCGAACATTTTTTAGATTTTCATGTGTTAAGC
ATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAACTCTTCTTTTGAGTATGATTGGGCCCCGCAG
TGGTAGAACCTGGTGAACCGGGCGTACCATTTTACTGTACTTTCT
Found at i:318105 original size:22 final size:23
Alignment explanation
Indices: 318075--318120 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
318065 AAAAGATCAC
**
318075 AGCGCATTCTTTCAAAGAGAAGA
1 AGCGCATTCTAGCAAAGAGAAGA
318098 AGCG-ATTCTAGCAAAGAGAAGA
1 AGCGCATTCTAGCAAAGAGAAGA
318120 A
1 A
318121 AGCAAGCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.17
Consensus pattern (23 bp):
AGCGCATTCTAGCAAAGAGAAGA
Left flanking sequence: Indices 317575 -- 318074
CCCGGGAAGAGATCTTCCTTTGAGTCCTACTCTGAGTTGATTCTTCCTCGGAGCTGTTGTCCTTT
ATCGGTCAAACTCAATCAAGCCAGGAGCCTGTTAGCCCGTTAGCAGTCAAAGGCTTGAAAGCATG
CCCCGCGAGTTCCGAGTTCCTCCTTTTTATTAGCGGTTGAGTGTGCCAAGCCGGGCAGGAGTTAT
TGCATTGATGCCGAGAATGCAAGCTTTGGAAGACGGTCAAGGAAGCAAGGCAGTGGCTGCTACGG
ATGAGGGAAAGCTTCTTCTTCTTTCTCTTTCTCGATGGTAATTGAATAGCCGGTGCCTTAGGAAT
TTCGTCTAGGAAGGGCTTTGGAAGAAAAGGGGAAGGACAGAGAGGATACCATCTAAGAAAGGACA
GGGAGGAGACCGCCTCTAAGACTACTCTCCTGGATGAGAGAACTACCCGGGGGCTCGAAGTGAAT
GAAGAATGATTGAGATGATAGCTAGGATGAACTTGAAAAGATCAC
Right flanking sequence: Indices 318121 -- 318620
AGCAAGCAAAGCTGGGGGGATCCATACACGCCCATAAACACAAGATTCAGATCTATCAAACCTAT
GATAGAGATTGAAAAAGCTATCCATCGAAAACCCACACCACCCTTAACCTTACGCGCCCAACTCA
AGGCTTCCTTGCTCACAACCAATCCCTCAAAGCAATGAATGCGCTCAAAAGCACGCCATAGCACG
AGATAAAGTTTCTGCGCGGCTGAAGACGGCGGTGGTACGTACGGCTTAGAGCCAAGGCATTCATA
GGTCTCCTGTAAGAGCTCCATCTAGGAAGTGATAGCTGAAAAGCTACTAGCATACCTGGGTCTAG
AACAGCAAATGGGAAGGCTCTTTCTCCTCACACTCACGACTCTCATGTATATTCTTCCCAAATCC
TAGCGTCAGCTACCATATTAAAAGCTACGCCTTGTTGCTCAAGCTGTTAGCGCGTAGTCTGTCTT
ATATGCCTCCAAGGGCGATGGTGGGTGTAGTACCGCACAGGAACG
Found at i:360453 original size:29 final size:29
Alignment explanation
Indices: 360411--360468 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
360401 GATCCCAGTG
360411 GATAGCTAAGTGAGGAACATCTTAGGCAC
1 GATAGCTAAGTGAGGAACATCTTAGGCAC
360440 GATAGCTAAGTGAGGAACATCTTAGGCAC
1 GATAGCTAAGTGAGGAACATCTTAGGCAC
360469 ATTGTAGAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (29 bp):
GATAGCTAAGTGAGGAACATCTTAGGCAC
Left flanking sequence: Indices 359911 -- 360410
ACGGATCCTCCTTTCCTTTGCCCCTGAACCCCAGCCTGTGGAAGCTGATCTCGATTCACTTCTCT
CTACTATATTTTGAACCAGATGCTCGGTCGGGGAGCCTCGGATTAAGAAATGAAAGATAAGTTGT
TCGGAGGAGCTCCTCCTTCAGGAAGAGCTGCAAAGGCGAAGAGCGGATCTAATGGCCCTGGCCTA
GTAGCTCGGGTCGGGCATGCATCTGCAGATGTCTCCTCCTTGCTTATTAGTCGAGTGCGAGTGAA
GCCAGTCCAGTCCCTGCTGCAATTGATCCATCTTTTGAAAGCTATTCCTTTCCCCCGTCCAGTCT
CATTCAACCAGGACCATGGCACTTCTTGTTCCAATGACAGATCGGATACTTTATTCCTTTCTCCT
CTACAGGATCAGGAGGCTAACCTCTAAGTCACGTAGGTCTTTGATGTGTTGGTTGTTTCTTAGGT
TTCTTAACAGATGAATGCCCCAACAAGATAGAGAAGATCCCAGTG
Right flanking sequence: Indices 360469 -- 360968
ATTGTAGAGTAAGAAGATAGGAGAGATCTTACCATTGAACAGTACCGGCTTAGGGCATTAGCACT
CTCCCGGTGTGTGAATAGAAAGAAAAGCCAACTTTCACTCACTTCCTGGGGAATCAAGTACGGTA
AACAACCTCAATTGCTCAATATACAAAGAGACAGAAGTGGTAGTTCAGAAAGACAATCATTTACC
AACCGATCCGCGACAAGTATAAAGTAATTATCTTTGAACAACTGATATGCGACAAAGAACAGTCT
ACAGAGATAGCAGCGGCACCGGACTAGGGCATGGCGCAATGATCGCTTGAAGATCTGCTTAAGGT
GTGAACTATATTAGTAATTCTTTTTTTTTTCTCCTTTGTTTCACTTTCGAGTGATTCATCAATAG
GGGACCCTCCCATAGGAAGTTGCTTCTTGGAATGCCGTCGTCTAACTGGCAAAGCTTTCGTTTCT
TTGGGGCTACCCTGTAGAACCGGCTTCCGTTCCTTGATTCAAACC
Found at i:385434 original size:14 final size:14
Alignment explanation
Indices: 385415--385443 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
385405 GTCTGCTCTC
385415 TCTTATATAACCTA
1 TCTTATATAACCTA
385429 TCTTATATAACCTA
1 TCTTATATAACCTA
385443 T
1 T
385444 AATATAAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (14 bp):
TCTTATATAACCTA
Left flanking sequence: Indices 384915 -- 385414
GGGCCAGTTGCCCTTACGGTCTGGGGAAGTGTTCCGCGTTAGTGTTCGCCCGTTACTTAGCCTGG
GAGTTAATGGTACGCCCATCTTTCTGTAGAAGTAGGAATGCCACAAAGAGGTCCACGCTAGTCTT
CCTATTCCCGGTATCGAGCCAAGGAATCGATTTCTAGTGGCTAACTTTACCCAGAAGGTTAGGCC
CTTACAAGGCTGGTTATTATGCTCGCATGGGTGGTTTTCCTTTTCTTTTAAGTGCCCTCTCCTCT
TAATTAGAGGAGTAGGCTCTCCAGCGTAAACTCCGAATCTGATAAGAGGTTCTCTGTCTTGATGT
CTAGTATGGCTAGTCTAGGGCGCTCCCAGTGATCGATCGCTTACGAAAAGCCAGCGCCAAATAGT
GTCTCAGGAATCCGTCGGTCAGAGGCCAGTCCCTTCATTCTCATAAAGCCTGGTGAGGAGCTCTT
TCTCGCTATGGTGTATCAGCAGTAGAAAGCCCTTTGTCTGCTCTC
Right flanking sequence: Indices 385444 -- 385943
AATATAAGTCGGGGAAGGCCGAGTCTTTTCCTAAACTCAGATTAGTGTAAGGAGCTGTTAGGTTT
ATTCTATTGTTCTATCACCGAAGGCGGGAATCACAACCTGTTTTGTCTATAAAGAGAAGTGAGTT
AAGGGACCGGACAGAGGGGACTTGAATGCACCTATCTCCAATTAGTGAGGAGGCCGGTGGTTATG
GGTATGGATCCGCGCGAGATGATAGCTTTTTCGGGTTTTTGAACGGTTGCTGGTTTGTTGATTTC
CCTCTTGGTAACGGGAAACTAGCCAAGGTGTTTTTTTTCTTCCGTACACCTTTGCCGGAACCGGT
ACCCCCTATCATTGGCACGCGAGATGGTGGGAAAGCCGCTTCTGGGACCGTACGAACTAGAAGGA
ATGATGCTTGCATAGGTGGGGAGCTGCCTCTACTTCTACATGTGGTGCTACCTTCGCTGCTTTCA
TTAGTCTTGGTTCTTCCAAAGTAGCAATTAGGCTTGGACTTTGCG
Found at i:400200 original size:37 final size:37
Alignment explanation
Indices: 400150--400227 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
400140 TAAAAAAAAA
400150 AAAAAAGTACTCCTACTCTATTGTCTGT-CTTTAGAGT
1 AAAAAAGTACTCCTACTCTATTGTCT-TCCTTTAGAGT
*
400187 AAAAAAGTACTCCTACTCTTTTGTCTTCCTTTAGAGT
1 AAAAAAGTACTCCTACTCTATTGTCTTCCTTTAGAGT
400224 AAAA
1 AAAA
400228 CCAATGTCGT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
36 1 0.03
37 38 0.97
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (37 bp):
AAAAAAGTACTCCTACTCTATTGTCTTCCTTTAGAGT
Left flanking sequence: Indices 399650 -- 400149
AAGCTTGCTGGCGACATCGATTACACCTCGTTGTCGGGGGAGTTTCGGTGCGACCTCCCCAGCTT
TCCCCTACCCCCCCCTTTGCTGCTCAAACCGTAGCAGGTATTCGTGTAGAAGGAAATGCTATTTG
TACAGTAGTGGAAGCAGGGTACGCAACAGGCGAAAGTCGTGATAAAAGGTCCTGGTCTCAGAAGA
GATGCAGCATGACGAGCCAGAAGTGGTATACTATATAGAGGGTTTCGTACATAACGTAACCCCTA
GCCCATTGGGATGAGGGGTAGTTAGTTATCTCGGCATCGCGAAAAGCCGTTGAGCGCGCTTTAGT
GTGTTTTCCTTGCTTTTTGGGCTGCTTGCTTGCTAGCTGTTACGGACTTAGCGATCTCAACGCGG
TCCGTGCGGAACTTGTGCTGGCCTGCCCGTCCAGCTTTAATGCAGCTAACTCAGCTTTGCCGCTC
AAGGCATCAGCAACATTATTCAACCGTCTCTCTATTAAAAAAAAA
Right flanking sequence: Indices 400228 -- 400727
CCAATGTCGTTCTCTAGTTAGTATGCTAGAGGGTCACATTAGTCCTTTTATACTGGGTAGTGGCA
CATTAGTAAAATTCCCCAGAATAGATGCTGACCAACATAGATGGAAAAGCTCTATTCAATGCCGT
TCTCCTGCTGTATGTCTTAGGCATTGTGTTACCGAGACCTCTCATAGCAGCTGGAAAGTATAAAA
TGAGACTGATGTCGTCCAGGGTCGACACCTGCAATAAATATCATTAGCGAAGGTATCGCTGGAAA
GTATAAAATTAGACTGATAATAATTGTCGTCCATGGCCTGCAAGATCATTAGCGAAGGTAACGCA
GGGAAAGAAAATCTTTGAATGGTACTGATGGAAGATAGACCTGCAGATCATTAGCTAAGGTTTTG
CTGGTTAGTTTATAGTAGACTAAGACTCCTTATAGTATACTAAGACTCATGGGTAGCGACAACAG
CTATATCATTAGCGAAGGTATCGCAGGGAAAGCCAGTGTTTTACG
Found at i:400652 original size:20 final size:20
Alignment explanation
Indices: 400627--400665 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
400617 GCTGGTTAGT
400627 TTATAGTAGACTAAGACTCC
1 TTATAGTAGACTAAGACTCC
*
400647 TTATAGTATACTAAGACTC
1 TTATAGTAGACTAAGACTC
400666 ATGGGTAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (20 bp):
TTATAGTAGACTAAGACTCC
Left flanking sequence: Indices 400127 -- 400626
ACCGTCTCTCTATTAAAAAAAAAAAAAAAGTACTCCTACTCTATTGTCTGTCTTTAGAGTAAAAA
AGTACTCCTACTCTTTTGTCTTCCTTTAGAGTAAAACCAATGTCGTTCTCTAGTTAGTATGCTAG
AGGGTCACATTAGTCCTTTTATACTGGGTAGTGGCACATTAGTAAAATTCCCCAGAATAGATGCT
GACCAACATAGATGGAAAAGCTCTATTCAATGCCGTTCTCCTGCTGTATGTCTTAGGCATTGTGT
TACCGAGACCTCTCATAGCAGCTGGAAAGTATAAAATGAGACTGATGTCGTCCAGGGTCGACACC
TGCAATAAATATCATTAGCGAAGGTATCGCTGGAAAGTATAAAATTAGACTGATAATAATTGTCG
TCCATGGCCTGCAAGATCATTAGCGAAGGTAACGCAGGGAAAGAAAATCTTTGAATGGTACTGAT
GGAAGATAGACCTGCAGATCATTAGCTAAGGTTTTGCTGGTTAGT
Right flanking sequence: Indices 400666 -- 401165
ATGGGTAGCGACAACAGCTATATCATTAGCGAAGGTATCGCAGGGAAAGCCAGTGTTTTACGTCT
AACGATTATAAAAAAAAACTAGGAAAGCCATGCATGAAGAATCTTGGTTAAATTTATTGTCTGAG
ATAGAGAACCAACAAATCTTTTCTCTATGTAAGGATTTCGACGAGCTTTCTTTGGAGGACAAGAC
AGGTCCTTCTTCGTCTTCATCTTCTTCTTCATCTTCTTCTACGAGTCTAGTGCAACCTTCGTCTT
ATGGTGCTACCATTCATCGTTTCTTACGCAGTAAAACTAATTCTCAATGGAGCCATTCTATTAGT
GAGCTACTACGAGCACCTTTTATAGAGGTCCCTCGCAATTTAATGGAATCATCATCATTCAAGTC
ATATGAGATTTGTATGGGCTTTGGTCTTCGCTTTAGTCCGGGTATGCCTTATGGGTTCATTATAC
ATGATTTGAAGTTTCCAGTAACCTGGGAAAGGTTGTCTTTCTTAA
Found at i:400889 original size:12 final size:12
Alignment explanation
Indices: 400868--400900 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
400858 GACAGGTCCT
*
400868 TCTTCGTCTTCA
1 TCTTCTTCTTCA
400880 TCTTCTTCTTCA
1 TCTTCTTCTTCA
400892 TCTTCTTCT
1 TCTTCTTCT
400901 ACGAGTCTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.33, G:0.03, T:0.58
Consensus pattern (12 bp):
TCTTCTTCTTCA
Left flanking sequence: Indices 400368 -- 400867
TATGTCTTAGGCATTGTGTTACCGAGACCTCTCATAGCAGCTGGAAAGTATAAAATGAGACTGAT
GTCGTCCAGGGTCGACACCTGCAATAAATATCATTAGCGAAGGTATCGCTGGAAAGTATAAAATT
AGACTGATAATAATTGTCGTCCATGGCCTGCAAGATCATTAGCGAAGGTAACGCAGGGAAAGAAA
ATCTTTGAATGGTACTGATGGAAGATAGACCTGCAGATCATTAGCTAAGGTTTTGCTGGTTAGTT
TATAGTAGACTAAGACTCCTTATAGTATACTAAGACTCATGGGTAGCGACAACAGCTATATCATT
AGCGAAGGTATCGCAGGGAAAGCCAGTGTTTTACGTCTAACGATTATAAAAAAAAACTAGGAAAG
CCATGCATGAAGAATCTTGGTTAAATTTATTGTCTGAGATAGAGAACCAACAAATCTTTTCTCTA
TGTAAGGATTTCGACGAGCTTTCTTTGGAGGACAAGACAGGTCCT
Right flanking sequence: Indices 400901 -- 401400
ACGAGTCTAGTGCAACCTTCGTCTTATGGTGCTACCATTCATCGTTTCTTACGCAGTAAAACTAA
TTCTCAATGGAGCCATTCTATTAGTGAGCTACTACGAGCACCTTTTATAGAGGTCCCTCGCAATT
TAATGGAATCATCATCATTCAAGTCATATGAGATTTGTATGGGCTTTGGTCTTCGCTTTAGTCCG
GGTATGCCTTATGGGTTCATTATACATGATTTGAAGTTTCCAGTAACCTGGGAAAGGTTGTCTTT
CTTAAGTAATTCTCTTGGTTTATCTTATAATAGCAGACCTATTGCTGACCAATTCTTAGGTCATT
GCTGTTCCATGGCCGGTTTGCGTGGTTTTCTCAACAAAGAATATCGTTCTATATTGGTGGAGGTA
ATTAGTTATTATAACGGTATGTATGGGCGTTTCTTGGTTTTGGTCAGCTTGGGTATTGGTTGTAC
TGTCTGGTACGGGTTTACGCCAGGCACTGCCGATATTCTCCCCGC
Found at i:473705 original size:12 final size:12
Alignment explanation
Indices: 473670--473705 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
473660 GATATGCTTT
*
473670 TTCTTTTTTTGT
1 TTCTTTTTTTGA
473682 TTCTTTTTTTGA
1 TTCTTTTTTTGA
473694 TTCTTTTTTTGA
1 TTCTTTTTTTGA
473706 AACGACGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.06, C:0.08, G:0.08, T:0.78
Consensus pattern (12 bp):
TTCTTTTTTTGA
Left flanking sequence: Indices 473170 -- 473669
TAATAAAATAGATAGGGCTTTTCCCTATCTTACTAATAATAAGGGGGCTGCTAGTTGTAGCGCGC
TAACGCCCCTATAGAGTAAGGCTCTTCTTCTGCGAGACTCCATCAAAGTCCACCACTCATTGGTT
GGTCTTCAATTCTTTTTATTGAGACTATGCCCTCAATTCCATTCTTCGTCTTCCTAGTCGCAGTA
TTCTTGCTCAACTCAACATGCATTTTAGAGTGCCGTGCCGGGGCGATAGGCGCGCCGCAGTCACG
CATTCGAGCAAGAGCCTTTGCCAAATAGGGGGCCGGAATAAGTGCAAGAAACTCCACAAAATAAT
AGATTAAGGTGATAGAGTTTTTTCAGGCTTCGGAATTGAAAAAAGTGCTCTTTTTTTTTTGTCAG
CAGATTTCGCTCATCAAGTTCTTGTTTGATCTGCCGCTGTTAGAACACCACAATATTCGTCCTTT
TGGGGTTAATGCTCTCAATGGTGAATCGATCATTTGATATGCTTT
Right flanking sequence: Indices 473706 -- 474205
AACGACGGAATGGAAGAAAAGTAATGAAACCTGCGATGGCTACTGAATAACCTCCTTTTACTTTC
TCAATAATAAAGCCTTTGACCTTTGTATTCGTTCGCCAAATCTTATTCAGTTCCATCCAAGCTCG
GTTTTGTCTGAATCTTCGTGGAAGAAGAAGAAGCGGTTCACCAGCCACTACATCCCGGGATCCCA
CCAAATAATTAAACCTGGCGGCTGCTCGCTCTTTGATCAATGATTCACCGGCCACTACATCGATG
AAGAATCTCTCCAAAATCCGCTTTTTGATCAGTGATTCACCGGCCACTACATCCAGGGATCCCAC
CTTATTCTCAAACCTGGTGGCTCGGTTGATTGGCACTCCTGTAGGCTCATCTTGCATACAAATTC
TGGGGGTCCCAAGTCCTGCATCCACCAAGAACATTTCTTCCCTTAAGCGTAAAACTTCAGATTGT
AAGGCGTTTCCACTACATAAGAAAAAACTGGAATTAGATCTTGGA
Found at i:477023 original size:30 final size:30
Alignment explanation
Indices: 476987--477050 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
476977 TTGACCGCTC
476987 GAGCGTCCCCTGCTCCTCTCCCTATCGGGA
1 GAGCGTCCCCTGCTCCTCTCCCTATCGGGA
477017 GAGCGTCCCCTGCTCCTCTCCCTATCGGGA
1 GAGCGTCCCCTGCTCCTCTCCCTATCGGGA
477047 GAGC
1 GAGC
477051 TGCTACGCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.11, C:0.42, G:0.25, T:0.22
Consensus pattern (30 bp):
GAGCGTCCCCTGCTCCTCTCCCTATCGGGA
Left flanking sequence: Indices 476487 -- 476986
TGCCTTCCCCCTCAACCGGCCATAAGATAAAAGGAAGAGTGTTCGCTCCAGGCCTGTCATCGTGG
GATCTCCTTCTGCTCGTCCACTCGGGGATGACCCCTGACGTTGGCTACACTTCTTTGATTGCTTG
ATGGCTTGGGCGGTAATCTTCTCTATTCATCTATCCATCTACTGTGATCTCTGACTCAATTCCTT
AAGAAAGGGAAGTTTCACTCATTCCTCGAGGCCTCAGATCAGACCTTCAGGAACCCGAACGAAAA
GAAGGACGACTTGTCCTGTACGCTGCTGATCTCGTGATGACTACTCAATCTATTGCGTATTAAAA
GATCATGGGCTAAAGAATCCATGGGGCTAGTGCCATCTCTGATTCATAGCCCGAACTCGTATTCT
CTTGATTTTGCTTTGGCCGAACCCTTCCATGGACTATTGAACTTGGTAAGGCTTTTTCAAAGAAA
GGTCTTCCCATAACGTAGATCAAGAAGTCAATGCTTTGACCGCTC
Right flanking sequence: Indices 477051 -- 477550
TGCTACGCTCCTCTTCTGATGCCTTCACGCTCACTCGCTCAGACAAGATGCTGCTAATCATCAAA
GCCTGCATTTGGGTCTTCGCTTCTTGCCGGCTAATTCTTTGATGTCTTCTCCTTTGTCTCGAGAT
CAGGGGCAGGAGAGAAAGACTCTAATAAAGAAGATCATGTTCTCGCTAAACCCGGATCGTCTCTC
GCTCTTGTGCTTTGCAGCTCCTGACCTTCCGACAACGCAGCTTTTTCAAGATCTGAAAATCGAAT
AGCTCGTTCCGCTAATACCCTTGCTTCTCTTTTTGGCCATTGGCCTGTTGATGAACTGAGATGAT
TCATCTTAGTCTGAGTATGCCGTCTATGTCTTTAATAAAGAATAGATATTTATATATTCTATGGC
CAAGCCCAGGGATTGACAAATCTATAGTGGCGGGTCTATCTTCTTCTGGGCGAGCTGCGGAGCTA
CTTTATTCTTTCTTTCATTCCGCTTGATTGGTTGAAGAGAGCGCT
Found at i:487025 original size:13 final size:13
Alignment explanation
Indices: 487007--487033 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
486997 CAATATCAGC
487007 TTTATATTTGTTA
1 TTTATATTTGTTA
487020 TTTATATTTGTTA
1 TTTATATTTGTTA
487033 T
1 T
487034 ACACTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTATATTTGTTA
Left flanking sequence: Indices 486507 -- 487006
AAGTCTGTGTGTGCCCGGATGTTAAATGCTTGCTCTACAGAGGAGCCCGCAGGACCTAACCCTTG
GCACAGAATAGCTCGTACTTTTGGTGGAGGAAGGGAGGAAAGAGCTCTAACGCTAGTACGAGGAC
ATAGGGTAACGGGTATGTTTTCACGATACCACAAGATATTAATACTTTATTGATTGCGAGATACC
AAACCGTGATCTGCACCCACGAAACAAGCCCTCAATTCTGTGCCCAAAGCCTGTCTACGAAAGTA
TGTTACGATGCAAGAAAAGGTAAGATTCAATTCAATACTTTAGTGTACGTCTATCTAGCAAGTAG
TTCACAGCTTAGGATCAGAAGTGAAGTATCCTCCAGTGCTTGGTCTTGGTTCATCAACTAAGTTC
TATTAAAAGCAAGACATCCAAGGCTAGGAACCAGGGCACTCCTCTCCTCTATATAAATTACTGAG
GGGTAAGGCTATCGAAGTACCTGATATAAGTGCTTCAATATCAGC
Right flanking sequence: Indices 487034 -- 487533
ACACTTTAAAAAAATATTGTTTCATATAAACAATAGTTAGCTCGCCTCGCATTCTAGTACTGAAA
CCTCGCTGGTACCGAGCGTGGAAAAATGGCTGTCCGGAACTCTCTTTGCTGGCAAGCCACGCAAG
AGAGCACAGGTTTAACAGGATTTTGAATAACCCTAAAATATACTTGTTTTGCTCCTATTTTCTCT
AGAATAAAGGAAAGTGGAGCCCTAACCTTGAGTAGACCAACCGTCGGAATGAGATAGATCATATC
TTGGTTCAGTAATATGACTGTCTTTCATTTAGATATAGGTGTGCTAGTTCGGCTGTATGAGACGT
AACTCTTACTCGCCGTGCTTCGCCCATAGTATAAAGTTCTACAACTTAGAACCTATTCTCTCCGG
TCCCTCTCCTGGCGGCTTCTAAGGTAGGACCATCCGCTGTGATTCACTTTCCATATTAGGTAGTA
GGGGCCCCTTCTCCGATCATGCCTTATCCCTGTCATTCCTCGCAT
Done.