Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065260
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 369673
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 4 of 4
Found at i:326726 original size:33 final size:34
Alignment explanation
Indices: 326677--326746 Score: 115
Period size: 33 Copynumber: 2.1 Consensus size: 34
326667 CCCAACTCTT
*
326677 CCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTTGTCCTCACTTCGCTCGGA
*
326711 CCCTTCGG-CGGAGTTGTCCTCGCTTCGCTCGGA
1 CCCTTCGGTCGGAGTTGTCCTCACTTCGCTCGGA
326744 CCC
1 CCC
326747 GGTAGGTCGG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 26 0.76
34 8 0.24
ACGTcount: A:0.07, C:0.37, G:0.27, T:0.29
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTTGTCCTCACTTCGCTCGGA
Left flanking sequence: Indices 326177 -- 326676
GCCGGCACCAGAAACACCCAAAGAGCCTAATGATTGGGCACGCGAAGGAAGGGGTCTCCATTGCC
AGCCAAGGGAACATCGTTTCGACGCCCATCTCCTTCCCAATAACGAAAGAAGGGAATTTTCGGCC
GGATAAATTCTTAGAATTTTCAATTAAATTAAATTAAAGTAACTTAACCTAAGTTACTTTAGTTT
AATTTAATTGAAAATTAAGTTACTTTAGTCGCACTTCATCTATTTTCTCCTGTGATACTCGAGGG
TGTCTTTCGGTTGCTCTCGCCCGTCAGAGCATTAGCGTCGATTCTGAACCTTAAGAGTTCGACGG
GTGTAAGCTGCTGAAGGGAGGGTAGGAGATTTTTTCCAAGAGTTTCCTGCTCCTCGAGCGGTAGC
TCGATCCATGAGAGAAGCACCAAACAATGCAAATAGGCCACCCAAATGCTTGAAGCGAGCCTTGC
GGTAGAGGACTCCCACTTACCATCTTGCCAACTCCCCCAACTCTT
Right flanking sequence: Indices 326747 -- 327246
GGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGTTTTCGCGCGTAGCGCTCCT
TTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCG
GTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTATCGGACCAACTC
CTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCAACTCCCCCCACTCC
TCCCACTCCCCCCACTCCTCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTATCGGTCGGAGTTGTCCTACGGACCCTGATGCCGAACGGTAGATTGGAGGT
GTGAACGGACGTGTTAGACATTGCTGGTAATGATCTTGCTTAATC
Found at i:326923 original size:34 final size:35
Alignment explanation
Indices: 326838--326928 Score: 157
Period size: 35 Copynumber: 2.6 Consensus size: 35
326828 CCCCACTCCT
326838 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
326873 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
* *
326908 CCC-TTCGGTCGGAGTGGTCCT
1 CCCGGTAGGTCGGAGTGGTCCT
326929 ATCGGACCAA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
34 16 0.30
35 38 0.70
ACGTcount: A:0.10, C:0.30, G:0.34, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 326338 -- 326837
AATTAAAGTAACTTAACCTAAGTTACTTTAGTTTAATTTAATTGAAAATTAAGTTACTTTAGTCG
CACTTCATCTATTTTCTCCTGTGATACTCGAGGGTGTCTTTCGGTTGCTCTCGCCCGTCAGAGCA
TTAGCGTCGATTCTGAACCTTAAGAGTTCGACGGGTGTAAGCTGCTGAAGGGAGGGTAGGAGATT
TTTTCCAAGAGTTTCCTGCTCCTCGAGCGGTAGCTCGATCCATGAGAGAAGCACCAAACAATGCA
AATAGGCCACCCAAATGCTTGAAGCGAGCCTTGCGGTAGAGGACTCCCACTTACCATCTTGCCAA
CTCCCCCAACTCTTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTTGT
CCTCGCTTCGCTCGGACCCGGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGT
TTTCGCGCGTAGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCT
Right flanking sequence: Indices 326929 -- 327428
ATCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCAA
CTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAG
TGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCG
GAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTACGGACCCTGATGCCGAACG
GTAGATTGGAGGTGTGAACGGACGTGTTAGACATTGCTGGTAATGATCTTGCTTAATCTGGTAGT
GTGAGATCGAAGAGTCTTCTCATTCGGAATCAAGGAAGGAAGAGCAGCTGCATTCAATGTTTGAG
AGGATGGAGAGTAGGCTTGTGAAAATTGAAGCTAGTCTTCTGAATCTCGAGAAAAGGGTCGTTAC
TCCAGGGGGTAACACCCCGGGGGATGACCCCCCCACTACTTTTGC
Found at i:326995 original size:9 final size:9
Alignment explanation
Indices: 326984--327046 Score: 81
Period size: 9 Copynumber: 7.0 Consensus size: 9
326974 CGGAGGACCA
*
326984 ACTCCTCCA
1 ACTCCTCCC
*
326993 ACTCCCCCC
1 ACTCCTCCC
327002 ACTCCTCCC
1 ACTCCTCCC
*
327011 ACTCCCCCC
1 ACTCCTCCC
*
327020 ACTCCTCCA
1 ACTCCTCCC
*
327029 ACTCCCCCC
1 ACTCCTCCC
327038 ACTCCTCCC
1 ACTCCTCCC
327047 GGTAGGTCGG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.14, C:0.68, G:0.00, T:0.17
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 326484 -- 326983
ACCTTAAGAGTTCGACGGGTGTAAGCTGCTGAAGGGAGGGTAGGAGATTTTTTCCAAGAGTTTCC
TGCTCCTCGAGCGGTAGCTCGATCCATGAGAGAAGCACCAAACAATGCAAATAGGCCACCCAAAT
GCTTGAAGCGAGCCTTGCGGTAGAGGACTCCCACTTACCATCTTGCCAACTCCCCCAACTCTTCC
CTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTTGTCCTCGCTTCGCTCGGA
CCCGGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGTTTTCGCGCGTAGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTATCGGACCAA
CTCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCA
Right flanking sequence: Indices 327047 -- 327546
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTACGGACCC
TGATGCCGAACGGTAGATTGGAGGTGTGAACGGACGTGTTAGACATTGCTGGTAATGATCTTGCT
TAATCTGGTAGTGTGAGATCGAAGAGTCTTCTCATTCGGAATCAAGGAAGGAAGAGCAGCTGCAT
TCAATGTTTGAGAGGATGGAGAGTAGGCTTGTGAAAATTGAAGCTAGTCTTCTGAATCTCGAGAA
AAGGGTCGTTACTCCAGGGGGTAACACCCCGGGGGATGACCCCCCCACTACTTTTGCAGCAGTGG
GCCCCAACCCCGAGTCGGAAGTCTCGGGTCAGGGAGAGAGAGATTGTGCGTCCTCAGAATCAGAG
TACTACTTTAGTGACTCAGACACGGAGGATAAAGAGCCATTTCCT
Found at i:327005 original size:18 final size:18
Alignment explanation
Indices: 326984--327045 Score: 115
Period size: 18 Copynumber: 3.4 Consensus size: 18
326974 CGGAGGACCA
326984 ACTCCTCCAACTCCCCCC
1 ACTCCTCCAACTCCCCCC
*
327002 ACTCCTCCCACTCCCCCC
1 ACTCCTCCAACTCCCCCC
327020 ACTCCTCCAACTCCCCCC
1 ACTCCTCCAACTCCCCCC
327038 ACTCCTCC
1 ACTCCTCC
327046 CGGTAGGTCG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.15, C:0.68, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCAACTCCCCCC
Left flanking sequence: Indices 326484 -- 326983
ACCTTAAGAGTTCGACGGGTGTAAGCTGCTGAAGGGAGGGTAGGAGATTTTTTCCAAGAGTTTCC
TGCTCCTCGAGCGGTAGCTCGATCCATGAGAGAAGCACCAAACAATGCAAATAGGCCACCCAAAT
GCTTGAAGCGAGCCTTGCGGTAGAGGACTCCCACTTACCATCTTGCCAACTCCCCCAACTCTTCC
CTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTTGTCCTCGCTTCGCTCGGA
CCCGGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGTTTTCGCGCGTAGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTATCGGACCAA
CTCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCA
Right flanking sequence: Indices 327046 -- 327545
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTACGGACC
CTGATGCCGAACGGTAGATTGGAGGTGTGAACGGACGTGTTAGACATTGCTGGTAATGATCTTGC
TTAATCTGGTAGTGTGAGATCGAAGAGTCTTCTCATTCGGAATCAAGGAAGGAAGAGCAGCTGCA
TTCAATGTTTGAGAGGATGGAGAGTAGGCTTGTGAAAATTGAAGCTAGTCTTCTGAATCTCGAGA
AAAGGGTCGTTACTCCAGGGGGTAACACCCCGGGGGATGACCCCCCCACTACTTTTGCAGCAGTG
GGCCCCAACCCCGAGTCGGAAGTCTCGGGTCAGGGAGAGAGAGATTGTGCGTCCTCAGAATCAGA
GTACTACTTTAGTGACTCAGACACGGAGGATAAAGAGCCATTTCC
Found at i:327094 original size:34 final size:34
Alignment explanation
Indices: 327051--327168 Score: 218
Period size: 34 Copynumber: 3.4 Consensus size: 34
327041 CCTCCCGGTA
327051 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
327085 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
327119 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
*
327154 GGTCGGAGTTGTCCT
1 GGTCGGAGTGGTCCT
327169 ACGGACCCTG
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
34 66 0.80
35 16 0.20
ACGTcount: A:0.09, C:0.31, G:0.31, T:0.30
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 326551 -- 327050
CTCCTCGAGCGGTAGCTCGATCCATGAGAGAAGCACCAAACAATGCAAATAGGCCACCCAAATGC
TTGAAGCGAGCCTTGCGGTAGAGGACTCCCACTTACCATCTTGCCAACTCCCCCAACTCTTCCCT
TCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTTGTCCTCGCTTCGCTCGGACC
CGGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGTTTTCGCGCGTAGCGCTCC
TTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTATCGGACCAACT
CCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCAACTCCCCCCACTC
CTCCCACTCCCCCCACTCCTCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 327169 -- 327668
ACGGACCCTGATGCCGAACGGTAGATTGGAGGTGTGAACGGACGTGTTAGACATTGCTGGTAATG
ATCTTGCTTAATCTGGTAGTGTGAGATCGAAGAGTCTTCTCATTCGGAATCAAGGAAGGAAGAGC
AGCTGCATTCAATGTTTGAGAGGATGGAGAGTAGGCTTGTGAAAATTGAAGCTAGTCTTCTGAAT
CTCGAGAAAAGGGTCGTTACTCCAGGGGGTAACACCCCGGGGGATGACCCCCCCACTACTTTTGC
AGCAGTGGGCCCCAACCCCGAGTCGGAAGTCTCGGGTCAGGGAGAGAGAGATTGTGCGTCCTCAG
AATCAGAGTACTACTTTAGTGACTCAGACACGGAGGATAAAGAGCCATTTCCTGACGACGTGGGG
GTGCTTCGCGCTAAGTACCGTGTACTGGAGAGGCGGTACAAGGAAATGAGACACTTTCTGGAAAA
CCAGAAGACCTTGGTCTCACTGGGGAGCTGGTGTACCAGAGACGG
Found at i:328659 original size:33 final size:33
Alignment explanation
Indices: 328622--328686 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
328612 CTCTCGTCTT
328622 CCAACTCCTCCCTTCGGAATTCGGAGTTGTCCC
1 CCAACTCCTCCCTTCGGAATTCGGAGTTGTCCC
328655 CCAACTCCTCCCTTCGGAATTCGGAGTTGTCC
1 CCAACTCCTCCCTTCGGAATTCGGAGTTGTCC
328687 TCGCTTCGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.15, C:0.38, G:0.18, T:0.28
Consensus pattern (33 bp):
CCAACTCCTCCCTTCGGAATTCGGAGTTGTCCC
Left flanking sequence: Indices 328122 -- 328621
AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGA
GGACAACTCCGACCGAAGGGAGGAGTTGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGA
CCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCGGG
TCTTTCCTACGGGGCCAAGGCGAGAGTAGGGGCCTCAGTCAAGATAGGGGGCCTAAAGGGCTAAC
TAGTTCTATGAGGGCACTCTCTGATACCCTGTGCTGTTTCATGGAGTCAATCAGCTTCAAGGAGT
TAGCCTCCACTTGTGTTCACTCCCTCTCCGTTAGCCATCCTTCCTAGTCCTCAAGAACCTCGTGT
AGTAGTCCCCTATCATGCTGGATAGTGCGTCCTCCGCGAAATAGTAGTGTCCTGCCTTGCCTAGT
CTGGTCATCGTTTGGTCGTCACTCCCATAGTCCCCCTCTCGTCTT
Right flanking sequence: Indices 328687 -- 329186
TCGCTTCGCTCGGACCCGGTAGGTCGGACCAACTCCTCCCTATCGGCCGGAGTTGGCCAACTCCT
CCCTTCGGTCGGAGTTGTCCTCCGGACCCTGGCAGGGTCCTCCGACAGGAGGACCACTCCGAATT
CCGAGAGGGAGGAGTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGGGT
CCTCCGACAGGAGGACCACTCCGAATTCCGATAGGGAGGAGTTGGCCAGGGCAGCGCTACGCGCT
GCCCGCCGGGGGCGCGTAGCGCCCCCTGCCCCTGAGGTTCTCAGTCCCTTTGCGTGAGCCTGAGG
ACTCGCAGACGGTGTAGTAGTCAGACGAGTTTTGGCACCCTAGCCGCCCTTCTTCCCGCTGTTGT
TCGGTCAGGTGGTGTTGGTAAAAACGTGTAAAAAGCTCCCGCTCCGAAGAAGCATCTATGCAAGT
GCTAGCGCTGGTGCCAAGACAGCGAATCCGAAAGGATCGGAGCAT
Found at i:328767 original size:27 final size:28
Alignment explanation
Indices: 328715--328768 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
328705 GTAGGTCGGA
328715 CCAACTCCTCCCTATCGGCCGGAGTTGG
1 CCAACTCCTCCCTATCGGCCGGAGTTGG
*
328743 CCAACTCCTCCCT-TCGGTCGGAGTTG
1 CCAACTCCTCCCTATCGGCCGGAGTTG
328769 TCCTCCGGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.13, C:0.39, G:0.24, T:0.24
Consensus pattern (28 bp):
CCAACTCCTCCCTATCGGCCGGAGTTGG
Left flanking sequence: Indices 328215 -- 328714
GGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACA
ACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCGGGTCTTTCCTACGGGGCCAAGGCGAGAGTA
GGGGCCTCAGTCAAGATAGGGGGCCTAAAGGGCTAACTAGTTCTATGAGGGCACTCTCTGATACC
CTGTGCTGTTTCATGGAGTCAATCAGCTTCAAGGAGTTAGCCTCCACTTGTGTTCACTCCCTCTC
CGTTAGCCATCCTTCCTAGTCCTCAAGAACCTCGTGTAGTAGTCCCCTATCATGCTGGATAGTGC
GTCCTCCGCGAAATAGTAGTGTCCTGCCTTGCCTAGTCTGGTCATCGTTTGGTCGTCACTCCCAT
AGTCCCCCTCTCGTCTTCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCCCCAACTCCTCCCTTC
GGAATTCGGAGTTGTCCTCGCTTCGCTCGGACCCGGTAGGTCGGA
Right flanking sequence: Indices 328769 -- 329268
TCCTCCGGACCCTGGCAGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGG
GTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCTCCGACAGGAGGACC
ACTCCGAATTCCGATAGGGAGGAGTTGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGT
AGCGCCCCCTGCCCCTGAGGTTCTCAGTCCCTTTGCGTGAGCCTGAGGACTCGCAGACGGTGTAG
TAGTCAGACGAGTTTTGGCACCCTAGCCGCCCTTCTTCCCGCTGTTGTTCGGTCAGGTGGTGTTG
GTAAAAACGTGTAAAAAGCTCCCGCTCCGAAGAAGCATCTATGCAAGTGCTAGCGCTGGTGCCAA
GACAGCGAATCCGAAAGGATCGGAGCATCATAGCTTAGCGCACTCCCTCGGCCTTCGGGGCTTCG
CCCCCTGCCACCCTTGGCCCATTCGAAAAGCCGTTGAAAACTCGA
Found at i:328820 original size:24 final size:25
Alignment explanation
Indices: 328792--328921 Score: 66
Period size: 24 Copynumber: 5.6 Consensus size: 25
328782 GGCAGGGTCC
328792 TCCGACA-GGAGGACCACTCCGAAT
1 TCCGACAGGGAGGACCACTCCGAAT
* ****
328816 TCCGAGAGGGAGGAGTGGGTCC----
1 TCCGACAGGGAGGA-CCACTCCGAAT
328838 TCCGACA-GGAGGACCACTCCGAAT
1 TCCGACAGGGAGGACCACTCCGAAT
* ****
328862 TCCGAGAGGGAGGAGTGGGTCC----
1 TCCGACAGGGAGGA-CCACTCCGAAT
328884 TCCGACA-GGAGGACCACTCCGAAT
1 TCCGACAGGGAGGACCACTCCGAAT
*
328908 TCCGATAGGGAGGA
1 TCCGACAGGGAGGA
328922 GTTGGCCAGG
Statistics
Matches: 72, Mismatches: 21, Indels: 25
0.61 0.18 0.21
Matches are distributed among these distances:
20 6 0.08
21 12 0.17
22 12 0.17
24 18 0.25
25 18 0.25
26 6 0.08
ACGTcount: A:0.25, C:0.26, G:0.35, T:0.13
Consensus pattern (25 bp):
TCCGACAGGGAGGACCACTCCGAAT
Left flanking sequence: Indices 328292 -- 328791
GGGAGGAGTTGGAGGAGTTGGCGGGTCTTTCCTACGGGGCCAAGGCGAGAGTAGGGGCCTCAGTC
AAGATAGGGGGCCTAAAGGGCTAACTAGTTCTATGAGGGCACTCTCTGATACCCTGTGCTGTTTC
ATGGAGTCAATCAGCTTCAAGGAGTTAGCCTCCACTTGTGTTCACTCCCTCTCCGTTAGCCATCC
TTCCTAGTCCTCAAGAACCTCGTGTAGTAGTCCCCTATCATGCTGGATAGTGCGTCCTCCGCGAA
ATAGTAGTGTCCTGCCTTGCCTAGTCTGGTCATCGTTTGGTCGTCACTCCCATAGTCCCCCTCTC
GTCTTCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCCCCAACTCCTCCCTTCGGAATTCGGAGT
TGTCCTCGCTTCGCTCGGACCCGGTAGGTCGGACCAACTCCTCCCTATCGGCCGGAGTTGGCCAA
CTCCTCCCTTCGGTCGGAGTTGTCCTCCGGACCCTGGCAGGGTCC
Right flanking sequence: Indices 328922 -- 329421
GTTGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGTAGCGCCCCCTGCCCCTGAGGTTC
TCAGTCCCTTTGCGTGAGCCTGAGGACTCGCAGACGGTGTAGTAGTCAGACGAGTTTTGGCACCC
TAGCCGCCCTTCTTCCCGCTGTTGTTCGGTCAGGTGGTGTTGGTAAAAACGTGTAAAAAGCTCCC
GCTCCGAAGAAGCATCTATGCAAGTGCTAGCGCTGGTGCCAAGACAGCGAATCCGAAAGGATCGG
AGCATCATAGCTTAGCGCACTCCCTCGGCCTTCGGGGCTTCGCCCCCTGCCACCCTTGGCCCATT
CGAAAAGCCGTTGAAAACTCGAAATTGTTTCATTAATTCACGTATATGGATTCGAGAAGTTGAAC
TGCTGTCGTCTCTTCCTCCATAGGCTCCGCTCCTAGTATTCCTAGCTTCACAGTTGGTTCGGGGC
ATCGGGACGCATGCCGGCCGGGTAGTATTATCTATCTATTGGTTA
Found at i:328828 original size:25 final size:25
Alignment explanation
Indices: 328799--328875 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
328789 TCCTCCGACA
328799 GGAGGACCACTCCGAATTCCGAGAG
1 GGAGGACCACTCCGAATTCCGAGAG
**** *
328824 GGAGGAGTGGGTCC----TCCGACA-
1 GGAGGA-CCACTCCGAATTCCGAGAG
328845 GGAGGACCACTCCGAATTCCGAGAG
1 GGAGGACCACTCCGAATTCCGAGAG
328870 GGAGGA
1 GGAGGA
328876 GTGGGTCCTC
Statistics
Matches: 36, Mismatches: 10, Indels: 12
0.62 0.17 0.21
Matches are distributed among these distances:
20 3 0.08
21 6 0.17
22 6 0.17
24 6 0.17
25 12 0.33
26 3 0.08
ACGTcount: A:0.26, C:0.25, G:0.38, T:0.12
Consensus pattern (25 bp):
GGAGGACCACTCCGAATTCCGAGAG
Left flanking sequence: Indices 328299 -- 328798
GTTGGAGGAGTTGGCGGGTCTTTCCTACGGGGCCAAGGCGAGAGTAGGGGCCTCAGTCAAGATAG
GGGGCCTAAAGGGCTAACTAGTTCTATGAGGGCACTCTCTGATACCCTGTGCTGTTTCATGGAGT
CAATCAGCTTCAAGGAGTTAGCCTCCACTTGTGTTCACTCCCTCTCCGTTAGCCATCCTTCCTAG
TCCTCAAGAACCTCGTGTAGTAGTCCCCTATCATGCTGGATAGTGCGTCCTCCGCGAAATAGTAG
TGTCCTGCCTTGCCTAGTCTGGTCATCGTTTGGTCGTCACTCCCATAGTCCCCCTCTCGTCTTCC
AACTCCTCCCTTCGGAATTCGGAGTTGTCCCCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTC
GCTTCGCTCGGACCCGGTAGGTCGGACCAACTCCTCCCTATCGGCCGGAGTTGGCCAACTCCTCC
CTTCGGTCGGAGTTGTCCTCCGGACCCTGGCAGGGTCCTCCGACA
Right flanking sequence: Indices 328876 -- 329375
GTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGATAGGGAGGAGTTGGCCAGGGCAGCGCTA
CGCGCTGCCCGCCGGGGGCGCGTAGCGCCCCCTGCCCCTGAGGTTCTCAGTCCCTTTGCGTGAGC
CTGAGGACTCGCAGACGGTGTAGTAGTCAGACGAGTTTTGGCACCCTAGCCGCCCTTCTTCCCGC
TGTTGTTCGGTCAGGTGGTGTTGGTAAAAACGTGTAAAAAGCTCCCGCTCCGAAGAAGCATCTAT
GCAAGTGCTAGCGCTGGTGCCAAGACAGCGAATCCGAAAGGATCGGAGCATCATAGCTTAGCGCA
CTCCCTCGGCCTTCGGGGCTTCGCCCCCTGCCACCCTTGGCCCATTCGAAAAGCCGTTGAAAACT
CGAAATTGTTTCATTAATTCACGTATATGGATTCGAGAAGTTGAACTGCTGTCGTCTCTTCCTCC
ATAGGCTCCGCTCCTAGTATTCCTAGCTTCACAGTTGGTTCGGGG
Found at i:328853 original size:46 final size:46
Alignment explanation
Indices: 328786--328923 Score: 267
Period size: 46 Copynumber: 3.0 Consensus size: 46
328776 GACCCTGGCA
328786 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
328832 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
*
328878 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGATAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
328924 TGGCCAGGGC
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 91 1.00
ACGTcount: A:0.24, C:0.26, G:0.36, T:0.14
Consensus pattern (46 bp):
GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
Left flanking sequence: Indices 328286 -- 328785
ACCGAAGGGAGGAGTTGGAGGAGTTGGCGGGTCTTTCCTACGGGGCCAAGGCGAGAGTAGGGGCC
TCAGTCAAGATAGGGGGCCTAAAGGGCTAACTAGTTCTATGAGGGCACTCTCTGATACCCTGTGC
TGTTTCATGGAGTCAATCAGCTTCAAGGAGTTAGCCTCCACTTGTGTTCACTCCCTCTCCGTTAG
CCATCCTTCCTAGTCCTCAAGAACCTCGTGTAGTAGTCCCCTATCATGCTGGATAGTGCGTCCTC
CGCGAAATAGTAGTGTCCTGCCTTGCCTAGTCTGGTCATCGTTTGGTCGTCACTCCCATAGTCCC
CCTCTCGTCTTCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCCCCAACTCCTCCCTTCGGAATT
CGGAGTTGTCCTCGCTTCGCTCGGACCCGGTAGGTCGGACCAACTCCTCCCTATCGGCCGGAGTT
GGCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCCGGACCCTGGCA
Right flanking sequence: Indices 328924 -- 329423
TGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGTAGCGCCCCCTGCCCCTGAGGTTCTC
AGTCCCTTTGCGTGAGCCTGAGGACTCGCAGACGGTGTAGTAGTCAGACGAGTTTTGGCACCCTA
GCCGCCCTTCTTCCCGCTGTTGTTCGGTCAGGTGGTGTTGGTAAAAACGTGTAAAAAGCTCCCGC
TCCGAAGAAGCATCTATGCAAGTGCTAGCGCTGGTGCCAAGACAGCGAATCCGAAAGGATCGGAG
CATCATAGCTTAGCGCACTCCCTCGGCCTTCGGGGCTTCGCCCCCTGCCACCCTTGGCCCATTCG
AAAAGCCGTTGAAAACTCGAAATTGTTTCATTAATTCACGTATATGGATTCGAGAAGTTGAACTG
CTGTCGTCTCTTCCTCCATAGGCTCCGCTCCTAGTATTCCTAGCTTCACAGTTGGTTCGGGGCAT
CGGGACGCATGCCGGCCGGGTAGTATTATCTATCTATTGGTTATG
Found at i:329633 original size:23 final size:24
Alignment explanation
Indices: 329607--329666 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
329597 AGTGAACAAA
329607 GGGTCCCACCCC-CAAAAAGTAGG
1 GGGTCCCACCCCACAAAAAGTAGG
** *
329630 GGGTCCCACCCCACCGATAGTAGG
1 GGGTCCCACCCCACAAAAAGTAGG
329654 GGGTCCCCACCCC
1 GGGT-CCCACCCC
329667 GAGGTTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 12 0.38
24 12 0.38
25 8 0.25
ACGTcount: A:0.22, C:0.42, G:0.27, T:0.10
Consensus pattern (24 bp):
GGGTCCCACCCCACAAAAAGTAGG
Left flanking sequence: Indices 329107 -- 329606
AAAAGCTCCCGCTCCGAAGAAGCATCTATGCAAGTGCTAGCGCTGGTGCCAAGACAGCGAATCCG
AAAGGATCGGAGCATCATAGCTTAGCGCACTCCCTCGGCCTTCGGGGCTTCGCCCCCTGCCACCC
TTGGCCCATTCGAAAAGCCGTTGAAAACTCGAAATTGTTTCATTAATTCACGTATATGGATTCGA
GAAGTTGAACTGCTGTCGTCTCTTCCTCCATAGGCTCCGCTCCTAGTATTCCTAGCTTCACAGTT
GGTTCGGGGCATCGGGACGCATGCCGGCCGGGTAGTATTATCTATCTATTGGTTATGAATCAAGT
GGATCCGCCGGGCACTATGTTGGCTAGCCACTCTTCCAACAATAATAGGGAGCCGAGGATATGGA
TTCGAATGAAGTGGTTGGTATGTCTCACTCGACTGCGGAAATGAATCCTACCCCCTTCGCTGCGA
AGGTGGCTTCCTGGATAGTTGGTTTGTTCCGGCCCAGTGAACAAA
Right flanking sequence: Indices 329667 -- 330166
GAGGTTTTACACGCGATAGGGGTCCATCGTTGATTCCTTCTCCCGGAACATGGCCTCTGCGTTAA
CGAACCGAAGGAGCGTATGGTGGGCCGACTGCTTCAATTGCTTCCGAAACTGAGTCAGAAACTTC
TGCTGTTGCTGGCGCTGAAGGAACGGCCGAAGAAACTGGAATTGATTCAATATCTTCAGAACAAA
ATCCCATGTATATAGTAGATCCTCCAGCAGGAGAGATCACAGTAATTCCGGTAGAATATACCACT
TAATACTTTACGTCCTAATACTTTACGTCTCATATCTTCTAGTGATTCCGGGTTTAGCCTTTATC
CTCAATTTTCCCTCCCAACTTTGATCAGAGCTCCATTTAAGGGCAGGGGGGCGCTACGCGCCCCC
CGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGAGAGGAG
TTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGA
Found at i:329947 original size:15 final size:15
Alignment explanation
Indices: 329927--329955 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
329917 ATATACCACT
329927 TAATACTTTACGTCC
1 TAATACTTTACGTCC
329942 TAATACTTTACGTC
1 TAATACTTTACGTC
329956 TCATATCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (15 bp):
TAATACTTTACGTCC
Left flanking sequence: Indices 329427 -- 329926
CAAGTGGATCCGCCGGGCACTATGTTGGCTAGCCACTCTTCCAACAATAATAGGGAGCCGAGGAT
ATGGATTCGAATGAAGTGGTTGGTATGTCTCACTCGACTGCGGAAATGAATCCTACCCCCTTCGC
TGCGAAGGTGGCTTCCTGGATAGTTGGTTTGTTCCGGCCCAGTGAACAAAGGGTCCCACCCCCAA
AAAGTAGGGGGTCCCACCCCACCGATAGTAGGGGGTCCCCACCCCGAGGTTTTACACGCGATAGG
GGTCCATCGTTGATTCCTTCTCCCGGAACATGGCCTCTGCGTTAACGAACCGAAGGAGCGTATGG
TGGGCCGACTGCTTCAATTGCTTCCGAAACTGAGTCAGAAACTTCTGCTGTTGCTGGCGCTGAAG
GAACGGCCGAAGAAACTGGAATTGATTCAATATCTTCAGAACAAAATCCCATGTATATAGTAGAT
CCTCCAGCAGGAGAGATCACAGTAATTCCGGTAGAATATACCACT
Right flanking sequence: Indices 329956 -- 330455
TCATATCTTCTAGTGATTCCGGGTTTAGCCTTTATCCTCAATTTTCCCTCCCAACTTTGATCAGA
GCTCCATTTAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTC
CGATAGGAGGGCAACTCCGACCGATAGGGAGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAG
GGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGG
GTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTC
CGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAA
CGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGGAGGAC
AACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
Found at i:330345 original size:34 final size:34
Alignment explanation
Indices: 330284--330373 Score: 171
Period size: 34 Copynumber: 2.6 Consensus size: 34
330274 GTTGGTCCGA
330284 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGA-AGGGTCCGAACGAAGTG
330319 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
330353 AGGACCACTCCGACCGAAGGG
1 AGGACCACTCCGACCGAAGGG
330374 AGGAGTTGGA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 38 0.69
35 17 0.31
ACGTcount: A:0.29, C:0.30, G:0.32, T:0.09
Consensus pattern (34 bp):
AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
Left flanking sequence: Indices 329784 -- 330283
AGTCAGAAACTTCTGCTGTTGCTGGCGCTGAAGGAACGGCCGAAGAAACTGGAATTGATTCAATA
TCTTCAGAACAAAATCCCATGTATATAGTAGATCCTCCAGCAGGAGAGATCACAGTAATTCCGGT
AGAATATACCACTTAATACTTTACGTCCTAATACTTTACGTCTCATATCTTCTAGTGATTCCGGG
TTTAGCCTTTATCCTCAATTTTCCCTCCCAACTTTGATCAGAGCTCCATTTAAGGGCAGGGGGGC
GCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCAACTCCGACCG
ATAGGGAGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCGA
Right flanking sequence: Indices 330374 -- 330873
AGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGGAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
GAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCCAACTCCGAATTCCGATAGGGAGG
AGTTGGTCCGACCAAAGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGGGG
ACAACTCCCCGATAGGGGAGTTGGGCAACGTCTCCACTTTTGACCAACATTTACCTGCATCACCT
GGACCAGGCTAGGGGGGACTAGTACACTATGTTAGGTATGCCGACAACTTTCTGGTGGGCACTAA
GAAAGGGACTTGCCCTCGGGAGGTGGGGGAAAGACTTAGAAACCACACTGCTGACCTTTCGCATA
TTTTTCCTTCAAGTAAAGGGCTACGTCATTCCTATCTGAATTGGCAGGTGGAAAGGCACTGCTTC
TCTCCCTGGTCCATGAACTCCGTGTGGGCGGTCCACTTCTCAACT
Found at i:332522 original size:9 final size:9
Alignment explanation
Indices: 332508--332554 Score: 76
Period size: 9 Copynumber: 5.2 Consensus size: 9
332498 GTCCTTCGGA
332508 CCAACTCCT
1 CCAACTCCT
332517 CCAACTCCT
1 CCAACTCCT
*
332526 CCCACTCCT
1 CCAACTCCT
*
332535 CCCACTCCT
1 CCAACTCCT
332544 CCAACTCCT
1 CCAACTCCT
332553 CC
1 CC
332555 CGGTAGGTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.17, C:0.62, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 332008 -- 332507
AGAAGCTCAACGATAGGATTTCTTACTGGAATTCCTTCTTGTTGGTGGCTAAAGCCCAACTCCCC
CCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGAATTCGGAGTTGGC
TAACTCCTCCCTATCGGAATTCGGAGTTGCCCTGTGCCTGGCAGGGTTCGGCCCCCGGGGGTTTA
AACGCCCCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGGCGGGAGGAGTTGCCAGGGGTC
GGCCCCCGGGGGTTTAAACGCCCCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCGCTTCGCTCGG
ACCCTGCCAACTCCTCCCGTGCGGAATCATTTGTTGTCCCCCCACTCCTCCCGGTAGGTCGGAGT
GGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTG
GTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGA
Right flanking sequence: Indices 332555 -- 333054
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTTCGGAGGGCC
CTGGAAGGGAATTCCTTTTTTTGGTGGCTCGAGTAGGGTCTCTCGACATTTTCCTACTACAGTAG
GCGCAGAGAGCCACGGTAGGTTATCTCGTTTCACTGCCTAGAAGCCGAGACTCTGGCCAGTATGA
TGGATAATAAGGCCGTGAGAGGTGGTGGTACTGAACTTTCTTCGTACCGCTTCTTCTCCATATTC
CCTCTCTTCACACACACTAGTCAGTAGATCCAGAGCTACACCGCA
Found at i:332661 original size:64 final size:64
Alignment explanation
Indices: 332560--332788 Score: 449
Period size: 64 Copynumber: 3.6 Consensus size: 64
332550 CCTCCCGGTA
332560 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
332624 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
332688 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
332752 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TCGG
332789 TCGGAGTGGC
Statistics
Matches: 164, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 160 0.98
65 4 0.02
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.24
Consensus pattern (64 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 332060 -- 332559
AGCCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGA
ATTCGGAGTTGGCTAACTCCTCCCTATCGGAATTCGGAGTTGCCCTGTGCCTGGCAGGGTTCGGC
CCCCGGGGGTTTAAACGCCCCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGGCGGGAGGA
GTTGCCAGGGGTCGGCCCCCGGGGGTTTAAACGCCCCCAACTCCTCCCTTCGGTCGGAGTTGTCC
TCGCTTCGCTCGGACCCTGCCAACTCCTCCCGTGCGGAATCATTTGTTGTCCCCCCACTCCTCCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTC
CTCCAACTCCTCCCACTCCTCCCACTCCTCCAACTCCTCCCGGTA
Right flanking sequence: Indices 332789 -- 333288
TCGGAGTGGCCCTCCTTCGGAGGGCCCTGGAAGGGAATTCCTTTTTTTGGTGGCTCGAGTAGGGT
CTCTCGACATTTTCCTACTACAGTAGGCGCAGAGAGCCACGGTAGGTTATCTCGTTTCACTGCCT
AGAAGCCGAGACTCTGGCCAGTATGATGGATAATAAGGCCGTGAGAGGTGGTGGTACTGAACTTT
CTTCGTACCGCTTCTTCTCCATATTCCCTCTCTTCACACACACTAGTCAGTAGATCCAGAGCTAC
ACCGCACTTCTTCGAGACGGAAGAAGGTTCGAATTCGAGTGCTTCCCGCTTCGCTAGTGCAAGCG
CCTTATCCCTTTCCCTTCCCAGAATTCCCAAGATCGAGTGCACTCGATTTAAGTGGTACGCACTC
GATACTTGGAAACACAGAAAAGCATGGGCCGCGATCAGTTGTTGGGGTAGAGAGCCTATGCGCTA
GACGTGCTTGTATGGTTCGGAGAGGACTCAGCGTACACCGATCCT
Found at i:333753 original size:64 final size:64
Alignment explanation
Indices: 333647--333875 Score: 449
Period size: 64 Copynumber: 3.6 Consensus size: 64
333637 ACCACTCCGA
333647 CCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGA-AGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
333712 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
333776 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
333840 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
333876 GAAGGGAGGA
Statistics
Matches: 164, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 160 0.98
65 4 0.02
ACGTcount: A:0.24, C:0.33, G:0.28, T:0.15
Consensus pattern (64 bp):
CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
Left flanking sequence: Indices 333147 -- 333646
TCGAGTGCACTCGATTTAAGTGGTACGCACTCGATACTTGGAAACACAGAAAAGCATGGGCCGCG
ATCAGTTGTTGGGGTAGAGAGCCTATGCGCTAGACGTGCTTGTATGGTTCGGAGAGGACTCAGCG
TACACCGATCCTGTTGATTGGTGGCCTTATTCCAAATATCTTTCTCAGGAATATCACGATTTGCC
GTCTAAACCCTTTTCCCCCTGCCAGGTGGGTCCTCTTTTACCAGAGCCGCTAGGCGAGGCATTTT
AGCCTTTTTCCTTTCCTCTTCCGCGGTAGAATACTTGACTTTAAAGGTTCAGCAAGACGCAAAAA
CAAAAGCGAAGGCCAAGGGAGGCGCGAAAGCATGCCAAGCGCAGAAGGAGAAGCGGAAGCGCTAA
AGCCATGTAAGCTACGAAAGCGGCATAAGCGGAAGCAAAAGAGGAAAGGCACGGCAAGCGGTTTC
AGAAGGAAGCACGAGAGCGTGCCAGGGTCCGCAGGACCACTCCGA
Right flanking sequence: Indices 333876 -- 334375
GAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGC
GCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTTAACTGCCGGCCTACCGGGAGGAC
AACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGAGGCGAGGACAACTCCGACCTACCGG
GAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGGCAGCAGAAGGGGAAGGCCCTTGC
CCTTATTAGGTTCTATCAAATCAATGGAGATGGCGGGCGGGGAGAAAGCCCAGGTTCCAGGAAGA
GAGAATATTTCCGCTACGGGTAAAATACATGACTTTAAACGAAATACATGACTTTAAACGAAATA
CATGACTTTAAACGGGAAGGGGAAGCAGAAGCAGGGCACTAAAGCGCTGCAGCGGAAACGGAAGC
AAAAGAGGAAGAAGGAAGGTGCTAAAGCGTAAGCTACGGAAGGAG
Found at i:334017 original size:22 final size:23
Alignment explanation
Indices: 333983--334026 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
333973 AAACACTTTT
*
333983 AACTGCCGGCCTACCGGGAGGAC
1 AACTGCCGACCTACCGGGAGGAC
334006 AACT-CCGACCTACCGGGAGGA
1 AACTGCCGACCTACCGGGAGGA
334027 GTGGGGGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.25, C:0.34, G:0.32, T:0.09
Consensus pattern (23 bp):
AACTGCCGACCTACCGGGAGGAC
Left flanking sequence: Indices 333483 -- 333982
GCCAAGGGAGGCGCGAAAGCATGCCAAGCGCAGAAGGAGAAGCGGAAGCGCTAAAGCCATGTAAG
CTACGAAAGCGGCATAAGCGGAAGCAAAAGAGGAAAGGCACGGCAAGCGGTTTCAGAAGGAAGCA
CGAGAGCGTGCCAGGGTCCGCAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACT
CCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACC
AGCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTT
Right flanking sequence: Indices 334027 -- 334526
GTGGGGGGAGTTGGTCCGAGGCGAGGACAACTCCGACCTACCGGGAGGACAACTCCGACCTACCG
GGAGGAGTGGGGGGAGTTGGGCAGCAGAAGGGGAAGGCCCTTGCCCTTATTAGGTTCTATCAAAT
CAATGGAGATGGCGGGCGGGGAGAAAGCCCAGGTTCCAGGAAGAGAGAATATTTCCGCTACGGGT
AAAATACATGACTTTAAACGAAATACATGACTTTAAACGAAATACATGACTTTAAACGGGAAGGG
GAAGCAGAAGCAGGGCACTAAAGCGCTGCAGCGGAAACGGAAGCAAAAGAGGAAGAAGGAAGGTG
CTAAAGCGTAAGCTACGGAAGGAGGCGCAAGAGCTACAGCGAGGGAAGAAGGAGCGAAAGGTAAA
TGCGGGAGAAGTTGCCGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGCCCCCCCACCCAATACC
GCGTCACGACCGATTAGTTCGCTACATGCTCAAAGTGTTCGAGGC
Found at i:334077 original size:22 final size:22
Alignment explanation
Indices: 334049--334097 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
334039 GGTCCGAGGC
334049 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
334071 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
334093 GAGGA
1 GAGGA
334098 GTGGGGGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.31, T:0.08
Consensus pattern (22 bp):
GAGGACAACTCCGACCTACCGG
Left flanking sequence: Indices 333549 -- 334048
TACGAAAGCGGCATAAGCGGAAGCAAAAGAGGAAAGGCACGGCAAGCGGTTTCAGAAGGAAGCAC
GAGAGCGTGCCAGGGTCCGCAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGA
CCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCA
GCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTTAACTGCCGGCCTACCGGGAGG
ACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGAGGC
Right flanking sequence: Indices 334098 -- 334597
GTGGGGGGAGTTGGGCAGCAGAAGGGGAAGGCCCTTGCCCTTATTAGGTTCTATCAAATCAATGG
AGATGGCGGGCGGGGAGAAAGCCCAGGTTCCAGGAAGAGAGAATATTTCCGCTACGGGTAAAATA
CATGACTTTAAACGAAATACATGACTTTAAACGAAATACATGACTTTAAACGGGAAGGGGAAGCA
GAAGCAGGGCACTAAAGCGCTGCAGCGGAAACGGAAGCAAAAGAGGAAGAAGGAAGGTGCTAAAG
CGTAAGCTACGGAAGGAGGCGCAAGAGCTACAGCGAGGGAAGAAGGAGCGAAAGGTAAATGCGGG
AGAAGTTGCCGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGCCCCCCCACCCAATACCGCGTCA
CGACCGATTAGTTCGCTACATGCTCAAAGTGTTCGAGGCCTAGGTTTTTTCCCCGGCAGGGGGAA
AAAAGCCACGGCCTTCCTTCCTTTTTCTTTCATCAGTCTTTTGAG
Found at i:334247 original size:19 final size:19
Alignment explanation
Indices: 334223--334279 Score: 114
Period size: 19 Copynumber: 3.0 Consensus size: 19
334213 GCTACGGGTA
334223 AAATACATGACTTTAAACG
1 AAATACATGACTTTAAACG
334242 AAATACATGACTTTAAACG
1 AAATACATGACTTTAAACG
334261 AAATACATGACTTTAAACG
1 AAATACATGACTTTAAACG
334280 GGAAGGGGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
AAATACATGACTTTAAACG
Left flanking sequence: Indices 333723 -- 334222
GAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCG
AACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGA
ACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAA
GGAGCGCCGTCGCGAAAACCAGCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTT
AACTGCCGGCCTACCGGGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGAGG
CGAGGACAACTCCGACCTACCGGGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGG
CAGCAGAAGGGGAAGGCCCTTGCCCTTATTAGGTTCTATCAAATCAATGGAGATGGCGGGCGGGG
AGAAAGCCCAGGTTCCAGGAAGAGAGAATATTTCCGCTACGGGTA
Right flanking sequence: Indices 334280 -- 334779
GGAAGGGGAAGCAGAAGCAGGGCACTAAAGCGCTGCAGCGGAAACGGAAGCAAAAGAGGAAGAAG
GAAGGTGCTAAAGCGTAAGCTACGGAAGGAGGCGCAAGAGCTACAGCGAGGGAAGAAGGAGCGAA
AGGTAAATGCGGGAGAAGTTGCCGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGCCCCCCCACC
CAATACCGCGTCACGACCGATTAGTTCGCTACATGCTCAAAGTGTTCGAGGCCTAGGTTTTTTCC
CCGGCAGGGGGAAAAAAGCCACGGCCTTCCTTCCTTTTTCTTTCATCAGTCTTTTGAGTTCCGCG
AAGCGGAGACCGAAGTTATGCAATTGAATGAATACCATTCAGAAGACTCGGGGACATTCAACCAA
AGGCTCCCCCCAAACAGAGTCTATCGAACGAAGTCACGGCGGGACTGAGAAATAATCATGGCTAG
TAAACGGAGTACCGATTTACTCTCCTTCTGAATGAGACTATTCTT
Found at i:335306 original size:9 final size:9
Alignment explanation
Indices: 335292--335321 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
335282 TAAATTAAAT
335292 TCCAACTCC
1 TCCAACTCC
335301 TCCAACTCC
1 TCCAACTCC
335310 TCCAACTCC
1 TCCAACTCC
335319 TCC
1 TCC
335322 CTTCGGTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.57, G:0.00, T:0.23
Consensus pattern (9 bp):
TCCAACTCC
Left flanking sequence: Indices 334792 -- 335291
GACTCCAATTCTCTCTTCTTGCTGGAAAGCATTATTCGGAGGTTATTCCGAAGGGACCGAAGGGT
CCGAGCGAAGCGAGGACAACTCCGAATTCCGAAGGGAGGAGTTGGCAACAAATAATTCCGATAGG
GAGGAGTTGGATAACTACACTCCGATCGTCCATAATAGTCTTTTCATTAGGAATAGAACCTTGGT
GCCTTAATCATACAAGGGCACAGGGTTCGACCGAAGGGTCCGAGGCGAGGACAACTCCGACCCTC
TCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
GGAGGAGTGGGGGGAGTTGGAGAACAACTCCGACCGAAGGGAGGAGTTGGAAACGCTACGCGTTT
CCCTAGCGGCGGGGTGGCTTAGGCCACCCTGCACCCAGCCGAATCCAGTGGTTTCGGTTCATGCT
CAGCTCTCTTTCCGCTGGGGAGCAGCAGTTTAAATTAAATTAAAT
Right flanking sequence: Indices 335322 -- 335821
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGG
CAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTAAGTAACCTTTAATT
TTCAATGAAATTAAATTAAAGTAAACTTAAACCTTTAATTTTCAATGAAATTAAATTAAAGTAAC
CCTTTCTTTCTTTAAAGTACTTTAATTTTCAATTAAATTAAATTAAAGGCTAAAAATTTCTTACG
CGCTTTAAAGGGGCGGCACCCGGCCACGATTGTGTGTTCAGCTTCCACCCTTTCGGCGAGTACCC
GAGCTTTTTGGGGTAGTTTCCGAACCTTTTTTGAATAAATGACTGTTTTCGTAACCAATTCACAG
AACAGATCTGCGAACTGTATGGAATCATTATTGACTGGAATGGGA
Found at i:336942 original size:6 final size:6
Alignment explanation
Indices: 336922--337027 Score: 77
Period size: 6 Copynumber: 18.2 Consensus size: 6
336912 AATCGATTCC
* *
336922 ATTTCA ATTTC- --TTCA ATTTCA ACTTCA ATTTCA ATAAGTCA A-TTCA
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA AT--TTCA ATTTCA
336968 ATTTCA A-TTCA ATAATTCA A--TCA A-TTCA ATTTCAA TATTTCA A-TTCA
1 ATTTCA ATTTCA AT--TTCA ATTTCA ATTTCA ATTTC-A -ATTTCA ATTTCA
337015 ATTTCA ATTTCA A
1 ATTTCA ATTTCA A
337028 CCTTCCTTTA
Statistics
Matches: 82, Mismatches: 4, Indels: 28
0.72 0.04 0.25
Matches are distributed among these distances:
3 3 0.04
4 4 0.05
5 18 0.22
6 41 0.50
7 2 0.02
8 14 0.17
ACGTcount: A:0.38, C:0.18, G:0.01, T:0.43
Consensus pattern (6 bp):
ATTTCA
Left flanking sequence: Indices 336422 -- 336921
GCAATAACCAGAACGTCTTCGTATAACTCTGAAGGGATATTGGAATCCGGAAATCTGTATCTATA
GCATGGTTTTTTGGTGGATAATTCCAACTCCTCCCTATCGGTCGGAGTTGCCCTTCGGGCCCTAG
CCGAGTATGGTTTTCCCTTTCTGAGATGAACCTTCTTATTTCTGCATATAGTGACTTTTTCGCGC
ATAGTTACTCCCTCCCTTATACGTTCCTTGTATTAATGACTGTTTGCGCCGAAAGCCTTTAGAAT
AGTATTATTGTTAAATCGGTGAATCCGTCAATGGAATCAGTAATGGTGAAGCGAATCCTGCAGCG
GATCAGAAGCAAAGAAAGTGTGGGAAGGGGGGCGCGGTAAATCATGAAACCAATAAATGATTGGT
GAATCATTAAATCGGTCAATAGATTTTCAGTAAATTGATCAGTAAATCAGTCAATCGAACTGATC
TTTAATCCGGGTAAGGTAAATCGATTCAAAAATTCAATCGATTCC
Right flanking sequence: Indices 337028 -- 337527
CCTTCCTTTAAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAAGTGTTGTTACTTTAATT
TGAAATTAAATGAAATTAAAGTACTTTCAATAAAGAAAGGCTCAAGATTTCACGATTTAACGAGA
AACCATTTACTGATTTCACGATCCGGCCGAGGGCGCGTGCTTCTCTGGAAGAACTGCCCGCCTGC
TGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGAGAGGCGCCAGAGAACTGGCGGAAGATTC
TATGATACGCAATTGTTTGATACGGAGAACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCCGTTGG
GTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCCTTTGTTGGGCAAGGGAATAGGCAAGAAG
GTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTCGGAAAACCGCACTTTACGGCCCAACTCC
TCCCCATCGGAATTCGGAGTTGCCCTGTAGGGTCCGAACGAAGTG
Found at i:336969 original size:19 final size:18
Alignment explanation
Indices: 336940--337022 Score: 74
Period size: 19 Copynumber: 4.9 Consensus size: 18
336930 TTCTTCAATT
336940 TCAACTTCAATTTCAATAA
1 TCAA-TTCAATTTCAATAA
336959 GTCAATTCAATTTCAAT--
1 -TCAATTCAATTTCAATAA
336976 TCAA-T-AA-TTC---AA
1 TCAATTCAATTTCAATAA
*
336988 TCAATTCAATTTCAATATT
1 TCAATTCAATTTCAATA-A
337007 TCAATTCAATTTCAAT
1 TCAATTCAATTTCAAT
337023 TTCAACCTTC
Statistics
Matches: 53, Mismatches: 1, Indels: 19
0.73 0.01 0.26
Matches are distributed among these distances:
12 4 0.08
13 4 0.08
14 4 0.08
15 4 0.08
16 4 0.08
18 1 0.02
19 28 0.53
20 4 0.08
ACGTcount: A:0.40, C:0.18, G:0.01, T:0.41
Consensus pattern (18 bp):
TCAATTCAATTTCAATAA
Left flanking sequence: Indices 336440 -- 336939
TCGTATAACTCTGAAGGGATATTGGAATCCGGAAATCTGTATCTATAGCATGGTTTTTTGGTGGA
TAATTCCAACTCCTCCCTATCGGTCGGAGTTGCCCTTCGGGCCCTAGCCGAGTATGGTTTTCCCT
TTCTGAGATGAACCTTCTTATTTCTGCATATAGTGACTTTTTCGCGCATAGTTACTCCCTCCCTT
ATACGTTCCTTGTATTAATGACTGTTTGCGCCGAAAGCCTTTAGAATAGTATTATTGTTAAATCG
GTGAATCCGTCAATGGAATCAGTAATGGTGAAGCGAATCCTGCAGCGGATCAGAAGCAAAGAAAG
TGTGGGAAGGGGGGCGCGGTAAATCATGAAACCAATAAATGATTGGTGAATCATTAAATCGGTCA
ATAGATTTTCAGTAAATTGATCAGTAAATCAGTCAATCGAACTGATCTTTAATCCGGGTAAGGTA
AATCGATTCAAAAATTCAATCGATTCCATTTCAATTTCTTCAATT
Right flanking sequence: Indices 337023 -- 337522
TTCAACCTTCCTTTAAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAAGTGTTGTTACTT
TAATTTGAAATTAAATGAAATTAAAGTACTTTCAATAAAGAAAGGCTCAAGATTTCACGATTTAA
CGAGAAACCATTTACTGATTTCACGATCCGGCCGAGGGCGCGTGCTTCTCTGGAAGAACTGCCCG
CCTGCTGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGAGAGGCGCCAGAGAACTGGCGGAA
GATTCTATGATACGCAATTGTTTGATACGGAGAACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCC
GTTGGGTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCCTTTGTTGGGCAAGGGAATAGGCA
AGAAGGTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTCGGAAAACCGCACTTTACGGCCCA
ACTCCTCCCCATCGGAATTCGGAGTTGCCCTGTAGGGTCCGAACG
Found at i:337012 original size:28 final size:27
Alignment explanation
Indices: 336960--337027 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
336950 TTTCAATAAG
336960 TCAATTCAATTTCAATTCAATAATTCAA
1 TCAATTCAATTTCAATT-AATAATTCAA
336988 TCAATTCAATTTCAA-T-AT--TTCAA
1 TCAATTCAATTTCAATTAATAATTCAA
337011 TTCAATTTCAATTTCAA
1 -TCAA-TTCAATTTCAA
337028 CCTTCCTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.13
24 4 0.11
25 13 0.34
27 1 0.03
28 15 0.39
ACGTcount: A:0.40, C:0.18, G:0.00, T:0.43
Consensus pattern (27 bp):
TCAATTCAATTTCAATTAATAATTCAA
Left flanking sequence: Indices 336460 -- 336959
ATTGGAATCCGGAAATCTGTATCTATAGCATGGTTTTTTGGTGGATAATTCCAACTCCTCCCTAT
CGGTCGGAGTTGCCCTTCGGGCCCTAGCCGAGTATGGTTTTCCCTTTCTGAGATGAACCTTCTTA
TTTCTGCATATAGTGACTTTTTCGCGCATAGTTACTCCCTCCCTTATACGTTCCTTGTATTAATG
ACTGTTTGCGCCGAAAGCCTTTAGAATAGTATTATTGTTAAATCGGTGAATCCGTCAATGGAATC
AGTAATGGTGAAGCGAATCCTGCAGCGGATCAGAAGCAAAGAAAGTGTGGGAAGGGGGGCGCGGT
AAATCATGAAACCAATAAATGATTGGTGAATCATTAAATCGGTCAATAGATTTTCAGTAAATTGA
TCAGTAAATCAGTCAATCGAACTGATCTTTAATCCGGGTAAGGTAAATCGATTCAAAAATTCAAT
CGATTCCATTTCAATTTCTTCAATTTCAACTTCAATTTCAATAAG
Right flanking sequence: Indices 337028 -- 337527
CCTTCCTTTAAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAAGTGTTGTTACTTTAATT
TGAAATTAAATGAAATTAAAGTACTTTCAATAAAGAAAGGCTCAAGATTTCACGATTTAACGAGA
AACCATTTACTGATTTCACGATCCGGCCGAGGGCGCGTGCTTCTCTGGAAGAACTGCCCGCCTGC
TGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGAGAGGCGCCAGAGAACTGGCGGAAGATTC
TATGATACGCAATTGTTTGATACGGAGAACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCCGTTGG
GTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCCTTTGTTGGGCAAGGGAATAGGCAAGAAG
GTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTCGGAAAACCGCACTTTACGGCCCAACTCC
TCCCCATCGGAATTCGGAGTTGCCCTGTAGGGTCCGAACGAAGTG
Found at i:337078 original size:37 final size:37
Alignment explanation
Indices: 337037--337114 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
337027 ACCTTCCTTT
337037 AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
1 AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
337074 AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
1 AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
337111 AAGT
1 AAGT
337115 ACTTTCAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42
Consensus pattern (37 bp):
AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
Left flanking sequence: Indices 336537 -- 337036
CCCTTCGGGCCCTAGCCGAGTATGGTTTTCCCTTTCTGAGATGAACCTTCTTATTTCTGCATATA
GTGACTTTTTCGCGCATAGTTACTCCCTCCCTTATACGTTCCTTGTATTAATGACTGTTTGCGCC
GAAAGCCTTTAGAATAGTATTATTGTTAAATCGGTGAATCCGTCAATGGAATCAGTAATGGTGAA
GCGAATCCTGCAGCGGATCAGAAGCAAAGAAAGTGTGGGAAGGGGGGCGCGGTAAATCATGAAAC
CAATAAATGATTGGTGAATCATTAAATCGGTCAATAGATTTTCAGTAAATTGATCAGTAAATCAG
TCAATCGAACTGATCTTTAATCCGGGTAAGGTAAATCGATTCAAAAATTCAATCGATTCCATTTC
AATTTCTTCAATTTCAACTTCAATTTCAATAAGTCAATTCAATTTCAATTCAATAATTCAATCAA
TTCAATTTCAATATTTCAATTCAATTTCAATTTCAACCTTCCTTT
Right flanking sequence: Indices 337115 -- 337614
ACTTTCAATAAAGAAAGGCTCAAGATTTCACGATTTAACGAGAAACCATTTACTGATTTCACGAT
CCGGCCGAGGGCGCGTGCTTCTCTGGAAGAACTGCCCGCCTGCTGGGTAAGAGGAGAGAGAACCT
TCCCTTCCTGGGCGAGAGGCGCCAGAGAACTGGCGGAAGATTCTATGATACGCAATTGTTTGATA
CGGAGAACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCCGTTGGGTGGGCGAGAGAAGAGAGAACG
GGGTGCCCGCCTGCCTTTGTTGGGCAAGGGAATAGGCAAGAAGGTGCCTTAAGGTGGGCGGAGGA
TAGGCGAGAGTTTTCGGAAAACCGCACTTTACGGCCCAACTCCTCCCCATCGGAATTCGGAGTTG
CCCTGTAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTGGCCCTTTAAA
Found at i:337554 original size:34 final size:34
Alignment explanation
Indices: 337511--337582 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
337501 GTTGCCCTGT
337511 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
1 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
337545 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
1 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
337579 AGGG
1 AGGG
337583 AGGAGGGGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.29, C:0.28, G:0.35, T:0.08
Consensus pattern (34 bp):
AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
Left flanking sequence: Indices 337011 -- 337510
TTCAATTTCAATTTCAACCTTCCTTTAAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAA
GTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAAGTACTTTCAATAAAGAAAGGCTCAAGAT
TTCACGATTTAACGAGAAACCATTTACTGATTTCACGATCCGGCCGAGGGCGCGTGCTTCTCTGG
AAGAACTGCCCGCCTGCTGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGAGAGGCGCCAGA
GAACTGGCGGAAGATTCTATGATACGCAATTGTTTGATACGGAGAACCGCCTGCCTTTTTGCCTG
GGTGAGAAGGCCGTTGGGTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCCTTTGTTGGGCA
AGGGAATAGGCAAGAAGGTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTCGGAAAACCGCA
CTTTACGGCCCAACTCCTCCCCATCGGAATTCGGAGTTGCCCTGT
Right flanking sequence: Indices 337583 -- 338082
AGGAGGGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGAACCTTTA
ATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAACCTTTAATTTTCAATGAAATTAAATTAA
AGTAACCCCACTTTAATTTTCAATGAAATTAAATTAAAGTAACCTCGCCCGACCGAAGGGTCCGA
ACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGGGGGCCTTCGGCCC
CGGGGGGCGCGTAGCGCCCCCCTGCCCTTTAGGCCGCCTCGTCCCGGCTTGTGCGGTGCATGAAG
GTACTTCTGAAACGAGATAGCCTCTCTCCAGATGCGTGCTCTAGCGACCGGGGAGAGAATTTGAT
TCCGGAACGGAATGAAGGCTGGCTAACGGTCGCTTCCGTAGCCTATCATTTACTGATTCACCGAT
TTACTGATTACTGATTTCCTTCAAGAGCACCCTTCCGGACAACAC
Found at i:337691 original size:43 final size:42
Alignment explanation
Indices: 337630--337754 Score: 179
Period size: 43 Copynumber: 3.0 Consensus size: 42
337620 GCCGTCGCGA
337630 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACC-TAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
337673 AAACCTAAGTAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCTAAG-AACCTTTAATTTTCAATGAAATTAAATTAAAGT
**
337716 -AACC---CCA-CTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
337753 AA
1 AA
337755 CCTCGCCCGA
Statistics
Matches: 78, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
37 30 0.38
38 2 0.03
42 8 0.10
43 38 0.49
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (42 bp):
AAACCTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
Left flanking sequence: Indices 337130 -- 337629
AGGCTCAAGATTTCACGATTTAACGAGAAACCATTTACTGATTTCACGATCCGGCCGAGGGCGCG
TGCTTCTCTGGAAGAACTGCCCGCCTGCTGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGA
GAGGCGCCAGAGAACTGGCGGAAGATTCTATGATACGCAATTGTTTGATACGGAGAACCGCCTGC
CTTTTTGCCTGGGTGAGAAGGCCGTTGGGTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCC
TTTGTTGGGCAAGGGAATAGGCAAGAAGGTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTC
GGAAAACCGCACTTTACGGCCCAACTCCTCCCCATCGGAATTCGGAGTTGCCCTGTAGGGTCCGA
ACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAG
GAGGGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGA
Right flanking sequence: Indices 337755 -- 338254
CCTCGCCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGG
AGTTGGCAGGGGGCCTTCGGCCCCGGGGGGCGCGTAGCGCCCCCCTGCCCTTTAGGCCGCCTCGT
CCCGGCTTGTGCGGTGCATGAAGGTACTTCTGAAACGAGATAGCCTCTCTCCAGATGCGTGCTCT
AGCGACCGGGGAGAGAATTTGATTCCGGAACGGAATGAAGGCTGGCTAACGGTCGCTTCCGTAGC
CTATCATTTACTGATTCACCGATTTACTGATTACTGATTTCCTTCAAGAGCACCCTTCCGGACAA
CACTACCATCAAGGAAGGAAAGACCACTAGTAGGGAGGATAGTGCTATCACTCTTCGGTGGAAAG
GCCGGGAAGTGGAGCTATCCATGGACAAAAAGAAGGGAAAGAGCGTAACAGCTGCCAGTGAGACA
ATTATGACGGCCGGGCCCACCAAAGTGGGAATCACACGGACAGTT
Found at i:337730 original size:37 final size:37
Alignment explanation
Indices: 337686--337756 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
337676 CCTAAGTAAC
337686 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
337723 CTTTAATTTTCAATGAAATTAAATTAAAGTAACC
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACC
337757 TCGCCCGACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.37
Consensus pattern (37 bp):
CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
Left flanking sequence: Indices 337186 -- 337685
GAGGGCGCGTGCTTCTCTGGAAGAACTGCCCGCCTGCTGGGTAAGAGGAGAGAGAACCTTCCCTT
CCTGGGCGAGAGGCGCCAGAGAACTGGCGGAAGATTCTATGATACGCAATTGTTTGATACGGAGA
ACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCCGTTGGGTGGGCGAGAGAAGAGAGAACGGGGTGC
CCGCCTGCCTTTGTTGGGCAAGGGAATAGGCAAGAAGGTGCCTTAAGGTGGGCGGAGGATAGGCG
AGAGTTTTCGGAAAACCGCACTTTACGGCCCAACTCCTCCCCATCGGAATTCGGAGTTGCCCTGT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGAC
CGAAGGGAGGAGGGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGA
ACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAAC
Right flanking sequence: Indices 337757 -- 338256
TCGCCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAG
TTGGCAGGGGGCCTTCGGCCCCGGGGGGCGCGTAGCGCCCCCCTGCCCTTTAGGCCGCCTCGTCC
CGGCTTGTGCGGTGCATGAAGGTACTTCTGAAACGAGATAGCCTCTCTCCAGATGCGTGCTCTAG
CGACCGGGGAGAGAATTTGATTCCGGAACGGAATGAAGGCTGGCTAACGGTCGCTTCCGTAGCCT
ATCATTTACTGATTCACCGATTTACTGATTACTGATTTCCTTCAAGAGCACCCTTCCGGACAACA
CTACCATCAAGGAAGGAAAGACCACTAGTAGGGAGGATAGTGCTATCACTCTTCGGTGGAAAGGC
CGGGAAGTGGAGCTATCCATGGACAAAAAGAAGGGAAAGAGCGTAACAGCTGCCAGTGAGACAAT
TATGACGGCCGGGCCCACCAAAGTGGGAATCACACGGACAGTTAG
Found at i:338916 original size:80 final size:80
Alignment explanation
Indices: 338766--338919 Score: 256
Period size: 80 Copynumber: 1.9 Consensus size: 80
338756 CTCCGACAGG
338766 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGG
1 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGG
338831 AGGAGTTGGTCCGAT
66 AGGAGTTGGTCCGAT
* * *
338846 AGGACCACTCCGACCGA-AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGG
1 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGA-AGGGAGGAGTGG
*
338910 GGGGAGTTGG
65 GAGGAGTTGG
338920 CCCTTTAAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
79 33 0.48
80 36 0.52
ACGTcount: A:0.26, C:0.24, G:0.38, T:0.12
Consensus pattern (80 bp):
AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGG
AGGAGTTGGTCCGAT
Left flanking sequence: Indices 338266 -- 338765
TTGTCCCCCTCCTTGTCCCGTTCATGGTACCGCCTACTGGTACCGCTACTGATAGCTATATCCCT
CCCTGGAGCGCTCAATCCGCGGAATTCCTTCTGATACGGAGTGACTGGCTGCCCCCAGCAAGGGA
GACAGATCTCATTTCAATGGCACAGTCTGCAGCAAGGGCGGGTCAAAAACCTTCTGCACCGCTTT
AAAAGGGGGACACTTTCTGTCGTTCATCGGTATTTCTTCTTTTGGGGGCCTTCTCTTAGGACAAA
GAAGAAAGGCCCACTCCCTTTAAAGCCGTTCTTGAAGGGAAGGTGGCTGAATGAAGCCGGCCGGC
ATGAGGGGACTTTTCATTCGTTATCCTTGAACGAACGAAGAAAAGGACCGGTAGAATACTTGACT
TTAAAGCTCCTATTTCTTCGATCAGCAAAAAGGGATTAGTCCTATCACCCACCCATAATTATTCG
TCAGCGGTTGGCTTGAAGAACAACCCTTCAGGGTCCTCCGACAGG
Right flanking sequence: Indices 338920 -- 339419
CCCTTTAAAGGAGCGCCGTCGCGAAAACCTGAGTAATTTGATTGAATTTAAGCGCTCCAACTCCT
CCCTCTCGGAATTCGGAGTGGTCCTATCGGACCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCT
CCTATCGGAGGGCAGGGGGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTAA
AAGAACTGAATTTTCAATGAAATTAAAGTGACTTTAAAGCGGTCTTTAGACACTCGACCGAAGGG
AGAGGGCGGTTAATCATTAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAAGGA
AATTAAATTAAAGTAACCTCAGCGGCCTTTTAAAAGTCGCTGCTAAAGGGCAACTCCTCCAACTC
CTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATA
GGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTAAATT
Found at i:339239 original size:35 final size:35
Alignment explanation
Indices: 339195--339263 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
339185 GCGGTTAATC
339195 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
339230 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
339264 CAGCGGCCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 338695 -- 339194
TCCTATCACCCACCCATAATTATTCGTCAGCGGTTGGCTTGAAGAACAACCCTTCAGGGTCCTCC
GACAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGG
AGTGGGAGGAGTTGGTCCGATAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCTGAGTA
ATTTGATTGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGACCAA
CTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTGGCCGGCCCCCGC
GGGGGGCGCGTAGCGCCCCCCTGCCCTTAAAAGAACTGAATTTTCAATGAAATTAAAGTGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 339264 -- 339763
CAGCGGCCTTTTAAAAGTCGCTGCTAAAGGGCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGT
CCTCACTTCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTC
CGAACGAAGTGAGGACAACGTAGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGTTAGGGAG
GAGTTGGTCCGGGCGAAGCGAGGACAACTCCCCGAGCTTTGAAGGAGTTGGCTTTAAGGGGCACT
AAAAACACGGAAGGCTTCCCGATGGGGGGATCCAGCCCCAGTCTGGGCGGCAGGGGCCACCCCTT
CCGGTTGGTTACACGTATGTTGCCAACCGCCACTCCGAGACCAAGGCAGAGATATATAGCATCTA
TATACGCGTTTCCGTGGTGCGCTCGCGGAGAACAACCCCATATTG
Found at i:341844 original size:33 final size:33
Alignment explanation
Indices: 341802--341866 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
341792 ATAGGGAGAG
*
341802 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTTGTCCTCACTTCGCTCGGACCCGC
*
341835 GGTCGGAGTTGTCCTCGCTTCGCTCGGACCCG
1 GGTCGGAGTTGTCCTCACTTCGCTCGGACCCG
341867 GTAGGCCGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.08, C:0.34, G:0.32, T:0.26
Consensus pattern (33 bp):
GGTCGGAGTTGTCCTCACTTCGCTCGGACCCGC
Left flanking sequence: Indices 341302 -- 341801
GCCGGTTCTTGCCCCGTAGGATAATCGTAGGCAATTGACCTTATAGCCCGGCGCCTGCCCCCCCT
CGCTCCCAAGCTCTCATAGAGCGCTATCCACCCTAGCCTTCTATGAAAGCTCCTTAAAGCGCCTT
GGGGCTCCGGCCCCGCTCCATAGAGCGATACCCACCTGCCTACTGTCCTGGCCCACGCTGCTTCC
TCGGCCTCACTGAACTACTCTGACTCAATCTCATGGGTCGGGTGTAGGCAATTTCTCCCGGCAAG
GAGAGGAGGCATTTATGCGGCGTTAAAGTACGTGACTTTAAAAGGGTATAATATCAGCGCTTTCT
TTCCACAATCAGCGCCCCCGCAGTCCGAGTCCGCAGAGTGCGAACTATCAGAACGAATCCGATAG
TGTGTAATGTCCGAATGAGAGGTCGTCTCTTCGTATTCACGTCGTTTTGGCGGGGGAAGAAAACC
AACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 341867 -- 342366
GTAGGCCGGCAGGGGGCGCTATTTTTAACCCTTTAAAGTCACGTACTTTAACTTTAAAGTCAAGT
ATTCTACCGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCCCTCCTCCCTT
CGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACC
CTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCACTTCAAATACTTAA
GTTTAAATTCAATTAAATTAAAGGTTCTTTGGACCAACTCCTCCCTCTCGGAATTCGGAGTTGTC
CTCCTGTCGGAGGACCCTGCCAGGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGTAGC
GCCCCCTGCCCCTGAAGCGCGTAGCGCTACCCTGCCCCTTATGCC
Found at i:342035 original size:34 final size:34
Alignment explanation
Indices: 341992--342064 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
341982 CTCCCCTCCT
341992 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
342026 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
342060 CCCTT
1 CCCTT
342065 TTAAAGAACC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.08, C:0.34, G:0.27, T:0.30
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 341492 -- 341991
CTTCCTCGGCCTCACTGAACTACTCTGACTCAATCTCATGGGTCGGGTGTAGGCAATTTCTCCCG
GCAAGGAGAGGAGGCATTTATGCGGCGTTAAAGTACGTGACTTTAAAAGGGTATAATATCAGCGC
TTTCTTTCCACAATCAGCGCCCCCGCAGTCCGAGTCCGCAGAGTGCGAACTATCAGAACGAATCC
GATAGTGTGTAATGTCCGAATGAGAGGTCGTCTCTTCGTATTCACGTCGTTTTGGCGGGGGAAGA
AAACCAACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCT
CACTTCGTTCGGACCCGCGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCGGTAGGCCGGCAGGGG
GCGCTATTTTTAACCCTTTAAAGTCACGTACTTTAACTTTAAAGTCAAGTATTCTACCGGTTTTC
GCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCCCTCCT
Right flanking sequence: Indices 342065 -- 342564
TTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCACTTCAAATACTTAAGTT
TAAATTCAATTAAATTAAAGGTTCTTTGGACCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTC
CTGTCGGAGGACCCTGCCAGGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGTAGCGCC
CCCTGCCCCTGAAGCGCGTAGCGCTACCCTGCCCCTTATGCCTTTGTACCTTTTGGGCAAGGGCA
CGGGAGGTTCAAGGGAATGAATTGACTGTCTATATGCGCACGCTAATGGAAATTCAATGCACCTA
CCATCTTGAACTTGGGCCAAGTGCCGATTTTGGGGAGGAATTAACCCTGACTGGGGCCAGGGTAG
CGCTACGCGCTACCCGCCCGGGTCCGCACCCCCCAGGCCCCTACC
Found at i:347325 original size:27 final size:28
Alignment explanation
Indices: 347295--347356 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 28
347285 CGAAGGGTCC
*
347295 GAGG-CGAGGACAACTCCGACCTACCGG
1 GAGGTCGAAGACAACTCCGACCTACCGG
*
347322 GAGGAGTTGGAAGACAACTCCGACCTACCGG
1 GA-G-G-TCGAAGACAACTCCGACCTACCGG
347353 GAGG
1 GAGG
347357 AGTTGGGCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
27 2 0.07
28 1 0.03
29 2 0.07
30 1 0.03
31 23 0.79
ACGTcount: A:0.27, C:0.27, G:0.35, T:0.10
Consensus pattern (28 bp):
GAGGTCGAAGACAACTCCGACCTACCGG
Left flanking sequence: Indices 346795 -- 347294
AAGCGGGCGGGCCACTAGCTACGCGCTTCCACTTTGGGGGCTAGTGGGAAGCGCAAAACATTTTT
TCAACCGCTTTAATTTAATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTTCG
GAGGGCCCTTAAATTCAAAATTCAATGAAATTAATTTCAAATATTTTGAATTGTGGTGGTAACAC
GCTTCTATTTACGTGTTTCTTCCCCCACGAATTAGGTGGTTCGGTCTAGGCAGGCTGGTTCTGCC
CACGAGTACGAGCTCCCGCCTCTGCGCTAGCACATTCCGACTCCAGGAATGAGCGGTCCACGCAA
TACGACGAATCGGGTGGCAGAACCCTTTAGGCTATGCCCAAGAGCTGTTGGAGGGAGCGAAGAAG
CGTTACTTTAAATAATTTCATTTCATTGAAAATTAATTTCAAACGACTACTTTAATTTCATTGAA
TTTAAATGGCCGAAGGCCACCCTGCCCGAAGGGACCGAAGGGTCC
Right flanking sequence: Indices 347357 -- 347856
AGTTGGGCAACTTCCGCCCCCCACACCACCACCCCGAAGTGGTGGGGGGCGGAAGTTGGGCTTTA
GCCTACTCCTTTAAACCCCACCCTTTGAAGCCTAAGGTGGGTAGGGAGTTGGGCGGTTTAAAGTC
CTAAAGTCATGTATTTTACCTAAAGTCATGTATTTTACCTAAAGTCATGTATTTTACCTGTATTC
TCCCGCCTCCGGTTAAAACCCACTTAGCCCGCCCTAGCGAACCATAGCAAAGGTATGCAGGCCCG
CCCCGTTTCGGAGAGTGCCGGGGCGGCCAGGCTAGCAGATCGGTCTTTGCCCCGGCTGATGGACA
TAATACGAAGCACGGAAAGGAGGGCTAGAATAAGCCCAGCATAGCGAATTAGAGCCGCAGCGACG
GCACATGACAGCTCAGAGCCCTGAACCCTATTTGCAGGGTGACCTGAATCGAATGCTAACACCCA
GCAGATTGCGGCCTAAGGCAGGCCAACCACAGCAGCACCACGGGT
Found at i:347338 original size:31 final size:31
Alignment explanation
Indices: 347303--347362 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
347293 CCGAGGCGAG
347303 GACAACTCCGACCTACCGGGAGGAGTTGGAA
1 GACAACTCCGACCTACCGGGAGGAGTTGGAA
347334 GACAACTCCGACCTACCGGGAGGAGTTGG
1 GACAACTCCGACCTACCGGGAGGAGTTGG
347363 GCAACTTCCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.33, T:0.13
Consensus pattern (31 bp):
GACAACTCCGACCTACCGGGAGGAGTTGGAA
Left flanking sequence: Indices 346803 -- 347302
GGGCCACTAGCTACGCGCTTCCACTTTGGGGGCTAGTGGGAAGCGCAAAACATTTTTTCAACCGC
TTTAATTTAATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTTCGGAGGGCCC
TTAAATTCAAAATTCAATGAAATTAATTTCAAATATTTTGAATTGTGGTGGTAACACGCTTCTAT
TTACGTGTTTCTTCCCCCACGAATTAGGTGGTTCGGTCTAGGCAGGCTGGTTCTGCCCACGAGTA
CGAGCTCCCGCCTCTGCGCTAGCACATTCCGACTCCAGGAATGAGCGGTCCACGCAATACGACGA
ATCGGGTGGCAGAACCCTTTAGGCTATGCCCAAGAGCTGTTGGAGGGAGCGAAGAAGCGTTACTT
TAAATAATTTCATTTCATTGAAAATTAATTTCAAACGACTACTTTAATTTCATTGAATTTAAATG
GCCGAAGGCCACCCTGCCCGAAGGGACCGAAGGGTCCGAGGCGAG
Right flanking sequence: Indices 347363 -- 347862
GCAACTTCCGCCCCCCACACCACCACCCCGAAGTGGTGGGGGGCGGAAGTTGGGCTTTAGCCTAC
TCCTTTAAACCCCACCCTTTGAAGCCTAAGGTGGGTAGGGAGTTGGGCGGTTTAAAGTCCTAAAG
TCATGTATTTTACCTAAAGTCATGTATTTTACCTAAAGTCATGTATTTTACCTGTATTCTCCCGC
CTCCGGTTAAAACCCACTTAGCCCGCCCTAGCGAACCATAGCAAAGGTATGCAGGCCCGCCCCGT
TTCGGAGAGTGCCGGGGCGGCCAGGCTAGCAGATCGGTCTTTGCCCCGGCTGATGGACATAATAC
GAAGCACGGAAAGGAGGGCTAGAATAAGCCCAGCATAGCGAATTAGAGCCGCAGCGACGGCACAT
GACAGCTCAGAGCCCTGAACCCTATTTGCAGGGTGACCTGAATCGAATGCTAACACCCAGCAGAT
TGCGGCCTAAGGCAGGCCAACCACAGCAGCACCACGGGTGATGGA
Found at i:347510 original size:19 final size:19
Alignment explanation
Indices: 347486--347545 Score: 120
Period size: 19 Copynumber: 3.2 Consensus size: 19
347476 GGTTTAAAGT
347486 CCTAAAGTCATGTATTTTA
1 CCTAAAGTCATGTATTTTA
347505 CCTAAAGTCATGTATTTTA
1 CCTAAAGTCATGTATTTTA
347524 CCTAAAGTCATGTATTTTA
1 CCTAAAGTCATGTATTTTA
347543 CCT
1 CCT
347546 GTATTCTCCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (19 bp):
CCTAAAGTCATGTATTTTA
Left flanking sequence: Indices 346986 -- 347485
ACACGCTTCTATTTACGTGTTTCTTCCCCCACGAATTAGGTGGTTCGGTCTAGGCAGGCTGGTTC
TGCCCACGAGTACGAGCTCCCGCCTCTGCGCTAGCACATTCCGACTCCAGGAATGAGCGGTCCAC
GCAATACGACGAATCGGGTGGCAGAACCCTTTAGGCTATGCCCAAGAGCTGTTGGAGGGAGCGAA
GAAGCGTTACTTTAAATAATTTCATTTCATTGAAAATTAATTTCAAACGACTACTTTAATTTCAT
TGAATTTAAATGGCCGAAGGCCACCCTGCCCGAAGGGACCGAAGGGTCCGAGGCGAGGACAACTC
CGACCTACCGGGAGGAGTTGGAAGACAACTCCGACCTACCGGGAGGAGTTGGGCAACTTCCGCCC
CCCACACCACCACCCCGAAGTGGTGGGGGGCGGAAGTTGGGCTTTAGCCTACTCCTTTAAACCCC
ACCCTTTGAAGCCTAAGGTGGGTAGGGAGTTGGGCGGTTTAAAGT
Right flanking sequence: Indices 347546 -- 348045
GTATTCTCCCGCCTCCGGTTAAAACCCACTTAGCCCGCCCTAGCGAACCATAGCAAAGGTATGCA
GGCCCGCCCCGTTTCGGAGAGTGCCGGGGCGGCCAGGCTAGCAGATCGGTCTTTGCCCCGGCTGA
TGGACATAATACGAAGCACGGAAAGGAGGGCTAGAATAAGCCCAGCATAGCGAATTAGAGCCGCA
GCGACGGCACATGACAGCTCAGAGCCCTGAACCCTATTTGCAGGGTGACCTGAATCGAATGCTAA
CACCCAGCAGATTGCGGCCTAAGGCAGGCCAACCACAGCAGCACCACGGGTGATGGAAGACCACA
ACAATTGCGGGAAAGGCAGTGTGGAAACTGGGCCAGTATTCACTTATCTAGGGTCCTCCGACAGG
AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTC
GAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
Found at i:348066 original size:9 final size:9
Alignment explanation
Indices: 348054--348082 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
348044 CCGACCGAAG
348054 GGAGGAGTT
1 GGAGGAGTT
348063 GGAGGAGTT
1 GGAGGAGTT
348072 GGAGGAGTT
1 GGAGGAGTT
348081 GG
1 GG
348083 TCATTTACCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 347554 -- 348053
CCGCCTCCGGTTAAAACCCACTTAGCCCGCCCTAGCGAACCATAGCAAAGGTATGCAGGCCCGCC
CCGTTTCGGAGAGTGCCGGGGCGGCCAGGCTAGCAGATCGGTCTTTGCCCCGGCTGATGGACATA
ATACGAAGCACGGAAAGGAGGGCTAGAATAAGCCCAGCATAGCGAATTAGAGCCGCAGCGACGGC
ACATGACAGCTCAGAGCCCTGAACCCTATTTGCAGGGTGACCTGAATCGAATGCTAACACCCAGC
AGATTGCGGCCTAAGGCAGGCCAACCACAGCAGCACCACGGGTGATGGAAGACCACAACAATTGC
GGGAAAGGCAGTGTGGAAACTGGGCCAGTATTCACTTATCTAGGGTCCTCCGACAGGAGGACAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 348083 -- 348582
TCATTTACCGTTTGAACCGAAGGAACGGGCGCCCGGCTGGCCACCACCTGCCGCGCTTCGCGCGT
TTTCCTGGCCGATAGGCACTTCTAAGAAGAACGACAAGCTCGAAGGAAAGGATATAGTAGTAGCC
GGGGCGGCTAGTCAATACCTACACCTACAGGAAGAGTCATAGGCTTAGTAGGGCTCGAACCTACA
ATATCACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCTTTAGAGCCAGCCCTAT
GCTCCGAGCAAGATAGGAAACGGATTTGTCGAAGGCTAGAAGCGTCTCCGAAACTTCCCCTTCCT
CTCTCTTCGAAAAAGGGCGAGGTTGTCCTTTGGGCCAGCCCTAGGCTGGGCTACAGCCCACCCTG
CCGCCTCGCCGGCACTCGACCAACGGGAGGGGATCACGTGTCGAGATTCGACCTTTAAAGGCACA
TTCTTTCGGATTTGAGACAGATGGCTCTGACCCGGGTAGGATGGG
Found at i:354445 original size:34 final size:34
Alignment explanation
Indices: 354401--354471 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
354391 CCCCACTCCT
* *
354401 CCCTTTGGTCGGAGTTGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
354435 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
354469 CCC
1 CCC
354472 CTTTTAAAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.08, C:0.34, G:0.27, T:0.31
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 353901 -- 354400
ACGTGCCAACTAGTTCTCGCGCTACTTTAAAAAGGGCATTTCCGCTCACTCGAATTGACGCTTAT
TCTATTCAAATTCGTGGGGAAGCTTCAGTATGCGCTACTAGTGGTGGTTTAATTTAATTTAAACT
CCCGTAGCGGATTGATGAAGGCGCTTATTCTACTCAGATTCTTCGTGTGTTACTGGTCGCTGCCT
AGTGGTCGCTACGTGCTACTCGTGATCCGGAAGTATGCGCCTTTTAAAAGGGCTTCGCTGGTACC
GGCGAATAAAATGCTATGTGCCCACCTTCATTTGCCACTAAGTGCCGGGGCTGAACAGCTTAGGT
ACCCCCGCCTAGTGGCGTGCCTATAGGGGTACGTGGCACTTTTTAAAGGGGCGCCTAGCACTTCT
TCCGAAATGCGTGTTACGCGTTTAGTGTGTGTCTCGCTACGCGCTTTAACCTAACTAAGAAAGCA
AGGCCGACTTTAAAGGGCCAACTCCCCCCAACTCCCCCCACTCCT
Right flanking sequence: Indices 354472 -- 354971
CTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGT
TGTCCTCCTGTCGGAGGACCCTGCCAGGCAGGGGGCCGAAGGCCCCCCTGCCCTACGGGCCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGA
CTTCTATTCGTACCTGCACCAAGAGCTGCCAGAGTTCCGAAAGCCTAGGCTAGATCCGACCGATA
CATTACCACCATGAAACTACTGACACGTAAATTGGTCAGCTTTTTATGCCGCTAGTCTATGGGAA
GCCCGGCAGGGGCGGCTTGGGTATTGATATCCGAGATGCCGCTAA
Found at i:355806 original size:46 final size:42
Alignment explanation
Indices: 355709--355808 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 42
355699 CCCCCGGGCT
*
355709 GGCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
1 GGCCAACTCCTCCCTCTCGGAATTCGGAGTGCTCCTATCGGA
355751 --CCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGA
1 GGCCAACTCCTCCCTCTCGGAATTCGGAG-TG--CTCCTATCGGA
355794 GGGCCAACTCCTCCC
1 -GGCCAACTCCTCCC
355809 ACTCCTCCCT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
40 27 0.53
41 2 0.04
43 10 0.20
46 12 0.24
ACGTcount: A:0.16, C:0.39, G:0.22, T:0.23
Consensus pattern (42 bp):
GGCCAACTCCTCCCTCTCGGAATTCGGAGTGCTCCTATCGGA
Left flanking sequence: Indices 355209 -- 355708
GGAGTTGGTTCAAAGTCGCTACTTTAAACCCCCCTAATAAGGGGTGGGGGGCCTCCGGCCCCCCC
CCGGGCCCTTCCGGGCCAGCCTCGGCCGGCAAGGCCAACTCCCCTAACTCCTCCCGCCACGGCCT
TTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCCTTTTAAAG
CGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTTTAAAGGGCCCGCCCTCCGGCAGGA
GGGCAACTCCGACCTACCGGGAGGAGTTGCCCGAGGCGCAGCACTTGTCTAGTCTTTATGCATCA
TCCTCCCCGATACTTGTAGAGTTTTTCCTAATTATCCCACCTCCAAGAGAGAGAAGAAGGCGGGA
GAGGTGGGGTGACATCAGAAGTAGGATCGTCGAACGGATAGCAGCATCGCATTGGGAATTGACTC
GTCGCACGAAATGAAGGGGTGGGGGGCCTCCGGCCCCCCCGGGCT
Right flanking sequence: Indices 355809 -- 356308
ACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCCTTCGGAGGGCCAACTCCTCCAACTCCTCCCA
CTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTCC
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGG
CCCTTTGGGCCAGCCTCGGCCTTCCACTCACCACTTTTGTCGAAGGATAGAACCTGGCTAATGAT
GCTCGTATCTTCTTCCCCAAATCCTCTCCTCTTTCCGAGATGGAA
Found at i:355841 original size:21 final size:21
Alignment explanation
Indices: 355811--355883 Score: 61
Period size: 21 Copynumber: 3.8 Consensus size: 21
355801 CTCCTCCCAC
*
355811 TCCTCCCTTCGGTCGGAGTGG
1 TCCTCACTTCGGTCGGAGTGG
*
355832 TCCTCACTTCGTTCGGA----
1 TCCTCACTTCGGTCGGAGTGG
*
355849 CCCT-A--TCGGTCGGAGTGG
1 TCCTCACTTCGGTCGGAGTGG
*
355867 TCCTCACTTCGTTCGGA
1 TCCTCACTTCGGTCGGA
355884 CCCTATCGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
14 8 0.21
16 1 0.03
17 3 0.08
18 3 0.08
19 1 0.03
21 23 0.59
ACGTcount: A:0.10, C:0.33, G:0.27, T:0.30
Consensus pattern (21 bp):
TCCTCACTTCGGTCGGAGTGG
Left flanking sequence: Indices 355311 -- 355810
ACTCCCCTAACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGT
CCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCC
ACTTTAAAGGGCCCGCCCTCCGGCAGGAGGGCAACTCCGACCTACCGGGAGGAGTTGCCCGAGGC
GCAGCACTTGTCTAGTCTTTATGCATCATCCTCCCCGATACTTGTAGAGTTTTTCCTAATTATCC
CACCTCCAAGAGAGAGAAGAAGGCGGGAGAGGTGGGGTGACATCAGAAGTAGGATCGTCGAACGG
ATAGCAGCATCGCATTGGGAATTGACTCGTCGCACGAAATGAAGGGGTGGGGGGCCTCCGGCCCC
CCCGGGCTGGCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGACCAACTCCTCCCTCT
CGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCAC
Right flanking sequence: Indices 355884 -- 356383
CCCTATCGGTCGGAGTGGTCCTCCTTCGGAGGGCCAACTCCTCCAACTCCTCCCACTCCTCCCTT
CGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGA
GTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTTGGGC
CAGCCTCGGCCTTCCACTCACCACTTTTGTCGAAGGATAGAACCTGGCTAATGATGCTCGTATCT
TCTTCCCCAAATCCTCTCCTCTTTCCGAGATGGAATCGGCCAATGAGCAACCAACCTTTCTAAGG
CGAGTGGATAATCGATACTTCCATAACACCCAGCATGCCGTGCCC
Found at i:355859 original size:35 final size:35
Alignment explanation
Indices: 355815--356034 Score: 232
Period size: 35 Copynumber: 6.6 Consensus size: 35
355805 TCCCACTCCT
355815 CCCT-TCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
355849 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
**
355884 CCCTATCGGTCGGAGTGGTCCTC-CTTCG-GAGG-
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
* * * ** * ** *
355916 GCCAACTC-CTCCAACTCCTCC-CAC-TC---C--T
1 CCCTA-TCGGTCGGAGTGGTCCTCACTTCGTTCGGA
355944 CCCT-TCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
355978 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
*
356013 CCCTATCGGTCGGAGTTGTCCT
1 CCCTATCGGTCGGAGTGGTCCT
356035 TCGGACCAAC
Statistics
Matches: 152, Mismatches: 21, Indels: 25
0.77 0.11 0.13
Matches are distributed among these distances:
26 2 0.01
27 7 0.05
28 5 0.03
29 2 0.01
31 3 0.02
32 12 0.08
33 4 0.03
34 13 0.09
35 104 0.68
ACGTcount: A:0.11, C:0.35, G:0.26, T:0.28
Consensus pattern (35 bp):
CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 355315 -- 355814
CCCTAACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTC
ACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTT
TAAAGGGCCCGCCCTCCGGCAGGAGGGCAACTCCGACCTACCGGGAGGAGTTGCCCGAGGCGCAG
CACTTGTCTAGTCTTTATGCATCATCCTCCCCGATACTTGTAGAGTTTTTCCTAATTATCCCACC
TCCAAGAGAGAGAAGAAGGCGGGAGAGGTGGGGTGACATCAGAAGTAGGATCGTCGAACGGATAG
CAGCATCGCATTGGGAATTGACTCGTCGCACGAAATGAAGGGGTGGGGGGCCTCCGGCCCCCCCG
GGCTGGCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGACCAACTCCTCCCTCTCGGA
ATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCACTCCT
Right flanking sequence: Indices 356035 -- 356534
TCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGA
CCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTTGGGCCAGCCTCGGCCTTCCACTCAC
CACTTTTGTCGAAGGATAGAACCTGGCTAATGATGCTCGTATCTTCTTCCCCAAATCCTCTCCTC
TTTCCGAGATGGAATCGGCCAATGAGCAACCAACCTTTCTAAGGCGAGTGGATAATCGATACTTC
CATAACACCCAGCATGCCGTGCCCCGGCTGGGGACCCGGGTAAAGCGCTACGCGCTTTCCACTTC
AGAATTTCACTTCTATAAAAAGGGGAAGCGCGTATAAAAAGGGGAAGCGCTACGCGGAAAAGAAA
AGAAAAGGAGGTGCGAAGGGAAGGAACGATTGAGACAAAGAAGTA
Found at i:355959 original size:129 final size:123
Alignment explanation
Indices: 355797--356108 Score: 536
Period size: 129 Copynumber: 2.5 Consensus size: 123
355787 TATCGGAGGG
355797 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
1 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
355862 AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCCTTCGGAGGGCCAACTCCT
66 AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGT--T-CTCCTTCGGA---CCAACTCCT
355926 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
1 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
*
355991 AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
66 AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTCTCCTTCGGACCAACTCCT
* *
356049 CCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TCGG
1 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGG
356109 CCTTTAGGCA
Statistics
Matches: 180, Mismatches: 3, Indels: 7
0.95 0.02 0.04
Matches are distributed among these distances:
122 4 0.02
123 63 0.35
126 9 0.05
127 1 0.01
129 103 0.57
ACGTcount: A:0.12, C:0.38, G:0.23, T:0.27
Consensus pattern (123 bp):
CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTCTCCTTCGGACCAACTCCT
Left flanking sequence: Indices 355297 -- 355796
GGCCGGCAAGGCCAACTCCCCTAACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATCTAATTTCAAT
GAAATTAAAGTGCCACTTTAAAGGGCCCGCCCTCCGGCAGGAGGGCAACTCCGACCTACCGGGAG
GAGTTGCCCGAGGCGCAGCACTTGTCTAGTCTTTATGCATCATCCTCCCCGATACTTGTAGAGTT
TTTCCTAATTATCCCACCTCCAAGAGAGAGAAGAAGGCGGGAGAGGTGGGGTGACATCAGAAGTA
GGATCGTCGAACGGATAGCAGCATCGCATTGGGAATTGACTCGTCGCACGAAATGAAGGGGTGGG
GGGCCTCCGGCCCCCCCGGGCTGGCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGAC
CAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGG
Right flanking sequence: Indices 356109 -- 356608
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGG
TCGGAGTGGCCCTCCTATCGGAGGGCCCTTTGGGCCAGCCTCGGCCTTCCACTCACCACTTTTGT
CGAAGGATAGAACCTGGCTAATGATGCTCGTATCTTCTTCCCCAAATCCTCTCCTCTTTCCGAGA
TGGAATCGGCCAATGAGCAACCAACCTTTCTAAGGCGAGTGGATAATCGATACTTCCATAACACC
CAGCATGCCGTGCCCCGGCTGGGGACCCGGGTAAAGCGCTACGCGCTTTCCACTTCAGAATTTCA
CTTCTATAAAAAGGGGAAGCGCGTATAAAAAGGGGAAGCGCTACGCGGAAAAGAAAAGAAAAGGA
GGTGCGAAGGGAAGGAACGATTGAGACAAAGAAGTACGAGCGGGCTGAGGCGATCGATAGTGATT
GTCAACTATACTGCTAAGGAGACTCGATTGATAGTTCGAAGAAGC
Found at i:356462 original size:19 final size:19
Alignment explanation
Indices: 356438--356474 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
356428 ATTTCACTTC
356438 TATAAAAAGGGGAAGCGCG
1 TATAAAAAGGGGAAGCGCG
356457 TATAAAAAGGGGAAGCGC
1 TATAAAAAGGGGAAGCGC
356475 TACGCGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.35, T:0.11
Consensus pattern (19 bp):
TATAAAAAGGGGAAGCGCG
Left flanking sequence: Indices 355938 -- 356437
ACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTC
CCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGG
GCCCTTTGGGCCAGCCTCGGCCTTCCACTCACCACTTTTGTCGAAGGATAGAACCTGGCTAATGA
TGCTCGTATCTTCTTCCCCAAATCCTCTCCTCTTTCCGAGATGGAATCGGCCAATGAGCAACCAA
CCTTTCTAAGGCGAGTGGATAATCGATACTTCCATAACACCCAGCATGCCGTGCCCCGGCTGGGG
ACCCGGGTAAAGCGCTACGCGCTTTCCACTTCAGAATTTCACTTC
Right flanking sequence: Indices 356475 -- 356974
TACGCGGAAAAGAAAAGAAAAGGAGGTGCGAAGGGAAGGAACGATTGAGACAAAGAAGTACGAGC
GGGCTGAGGCGATCGATAGTGATTGTCAACTATACTGCTAAGGAGACTCGATTGATAGTTCGAAG
AAGCCTGGAGTTTATCGCCCGGGTTCTTCTCCAGTTCCTTAACTTCAGTGAGCAAAGGTACCGCC
CCCATGGAAGGGCAGCCCCGAACGAAGGCCTGCATCTTCATCGATGCCGACCCGGTCTCAGGCTG
GTGCTCAACAACCGGCTGAATGAATGGCAGGGGGGCGCGTTAGCGCCCGGGCAGCCTGGCAGGCT
GCCCTGCCGATTTTCTATAGCCAAAGAAGCACTCGAAGCCTGGGTCGAACCATTGGTCACTTATC
CGCTCGTTCTTAGCACTGAAGAAGAATAAGTCTCATGTCCCTTAACCGACGATGCATGTTTAGTT
TTGTTCAACCTCTTAACGAGCTGATGTTTCCACGACAGAGATAAG
Found at i:358112 original size:26 final size:27
Alignment explanation
Indices: 358064--358114 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
358054 AGTGAGGACC
358064 ACTCCGACCTACCGGGAGGAGTTGGCA
1 ACTCCGACCTACCGGGAGGAGTTGGCA
358091 ACTCCGACCTA-CGGGAGGAGTTGG
1 ACTCCGACCTACCGGGAGGAGTTGG
358115 TCCTCCTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.16
Consensus pattern (27 bp):
ACTCCGACCTACCGGGAGGAGTTGGCA
Left flanking sequence: Indices 357564 -- 358063
TTTTTGCCCGAAAGTGGAAAGCGCTACGCTCCGCCCCCTTGCTGGGGCCAGGGGACCTTCTTGTC
TCAAAATTCGAATGAGGGGTAAGGGGGAGAAGAGCGGAAGTGGGTTCAAAAAGGAGGAGGAGCTT
CTAGCGAGAAAGGAAGGCCGAGACTACTGACCTTTCAAGCCTTTTAAAAAGTTCCTCCTGTTTCG
GAATCCGCCTGATCAGCCTCCTGGGAATTGATCACGGGAATCTATCCTGCACTACTCACTGCTTT
GATTCTTACTGAGACAAAATGGCTTCAGACAACGACAGAGAATTTCACATCAGGGTCCAAGCGAA
GCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAG
TGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAAGCCTTAAATTGAATTGAAACT
AAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTGAGGACC
Right flanking sequence: Indices 358115 -- 358614
TCCTCCTAAGGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGG
GAGGAGTGGGGGGAGTTGGCCCGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGACCTAC
GGGAGGACAACTCCGACCGAGGGGAGGAGTTGGCAGGGGCCCCCTAAGGGCCGGCAAGGCCCCCT
GCCCAACTCCGACCGATAGGGAGGAGTTGGTCCGGGCGAAGCGAGGACAACTCCCCGAGAGGGGA
GTTGGGCATGAAGGGGGAGGTCTAAGTGGAGATTTTGGATCCACTAACGCCAAGTGATGACCGGA
AGTGACCAAGGGCAGGGGGCCGAAGGCCCCCCTTTAAAGGGGCCGAAGGCCCCCTGCCCTCCGGC
AGGAGGGCAACTCCGACCTACCGGGAGGAGTTGGATTGTTAATAACCTTTAATTTTCAATGAAAT
TAAATTAAAGTGAGAGCTGTTGTATATGGCACGTTGATGGTCCTA
Found at i:359507 original size:35 final size:34
Alignment explanation
Indices: 359463--359623 Score: 250
Period size: 35 Copynumber: 4.6 Consensus size: 34
359453 CCTCCGATAG
*
359463 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
359498 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
* *
359532 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
* *
359567 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
359602 GAGGACCACTCCGACCGAAGGG
1 GAGGACCACTCCGACCGAAGGG
359624 AGGAGTGGGA
Statistics
Matches: 120, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
34 36 0.30
35 84 0.70
ACGTcount: A:0.27, C:0.32, G:0.32, T:0.10
Consensus pattern (34 bp):
GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 358963 -- 359462
CCTGTCAATTGCACACCTCAACATTTGCCACCCAGCCTGGATCTAGATATGCATCCTAAGGTGCA
GTGCCAGTTGTTTACTTTTCTTCAGTTGAATCAGCCTAAGAACCTTTAATTTTCAATGAAATTAA
ATTAAAGTAACCCCAGGCATTTGATCCAGTTGACTGAGCAAAAGCATCACCCTACGGGGCGGCCT
TTTATCACCCACAACCATAGCATGACGCTCACCGGCTTCACGACATCCACTTGTCGCGTGTGAAT
GAGTCTAGGGCCGGGCGTTATCCAATGACCCGGGTGGATTCATACCCTGTTCCAGAAGCAAGGAC
AGTTGACCGGGGATCAGTGGCAGAGGCAGTTCGAAAGCGCCGGGGTAATGAGTTAAAGCAGCAGT
TACCTAATAAGTAGCACTAAAACCAAAAAGTCGGACTCTTTTTCACAGAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 359624 -- 360123
AGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCGGTCAATCG
CTTATTCAATGGGTGGTGCTTCTGCCAAAGCTTCTGACTGTGATGCTCGCTCTCGAAATGGAAGG
ATTCACTGAGCCGAATATAGCTACCTTCCAATCTATGGTGGAAAGTATGAATCTCTGTTCCTGTG
GTTTGTTTCGAGGTGTATGGGAAGGAGTGATGTTCTTTGTTAATAGGTGTAAAGAGAGTTTCTAG
ATCTCACCTTTTGGGTTCTTCTAAAGCAGGCCAGAAATGAGGTCGACTCTTCCTCTGTCTCTACC
TGCTCCACCACGGCGGAATTGATTCATTGATTCCAACTCCTCCCGGTAGGTCGGAGTTGCCCTCC
TTATTGGGAGGGCTTTAAAGGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGAACCTTTAA
TTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAACCTTTAATT
Found at i:359579 original size:69 final size:70
Alignment explanation
Indices: 359463--359623 Score: 254
Period size: 69 Copynumber: 2.3 Consensus size: 70
359453 CCTCCGATAG
* *
359463 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGA-AGGGTCCGAAC
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAAC
359527 GAAGT
66 GAAGT
* * * *
359532 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAAC
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAAC
359597 GAAGT
66 GAAGT
359602 GAGGACCACTCCGACCGA-AGGG
1 GAGGACCACTCCGACCGACAGGG
359624 AGGAGTGGGA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
69 51 0.61
70 32 0.39
ACGTcount: A:0.27, C:0.32, G:0.32, T:0.10
Consensus pattern (70 bp):
GAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAAC
GAAGT
Left flanking sequence: Indices 358963 -- 359462
CCTGTCAATTGCACACCTCAACATTTGCCACCCAGCCTGGATCTAGATATGCATCCTAAGGTGCA
GTGCCAGTTGTTTACTTTTCTTCAGTTGAATCAGCCTAAGAACCTTTAATTTTCAATGAAATTAA
ATTAAAGTAACCCCAGGCATTTGATCCAGTTGACTGAGCAAAAGCATCACCCTACGGGGCGGCCT
TTTATCACCCACAACCATAGCATGACGCTCACCGGCTTCACGACATCCACTTGTCGCGTGTGAAT
GAGTCTAGGGCCGGGCGTTATCCAATGACCCGGGTGGATTCATACCCTGTTCCAGAAGCAAGGAC
AGTTGACCGGGGATCAGTGGCAGAGGCAGTTCGAAAGCGCCGGGGTAATGAGTTAAAGCAGCAGT
TACCTAATAAGTAGCACTAAAACCAAAAAGTCGGACTCTTTTTCACAGAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 359624 -- 360123
AGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCGGTCAATCG
CTTATTCAATGGGTGGTGCTTCTGCCAAAGCTTCTGACTGTGATGCTCGCTCTCGAAATGGAAGG
ATTCACTGAGCCGAATATAGCTACCTTCCAATCTATGGTGGAAAGTATGAATCTCTGTTCCTGTG
GTTTGTTTCGAGGTGTATGGGAAGGAGTGATGTTCTTTGTTAATAGGTGTAAAGAGAGTTTCTAG
ATCTCACCTTTTGGGTTCTTCTAAAGCAGGCCAGAAATGAGGTCGACTCTTCCTCTGTCTCTACC
TGCTCCACCACGGCGGAATTGATTCATTGATTCCAACTCCTCCCGGTAGGTCGGAGTTGCCCTCC
TTATTGGGAGGGCTTTAAAGGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGAACCTTTAA
TTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAACCTTTAATT
Found at i:360117 original size:43 final size:38
Alignment explanation
Indices: 360073--360221 Score: 212
Period size: 37 Copynumber: 3.8 Consensus size: 38
360063 CCGTAAGAAC
*
360073 CTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAAACC----CAA
*
360115 CCTTTAATTTTCAATGAAATTAAATTAAAGT-AACCCCA
1 -CTTTAATTTTCAATGAAATTAAATTAAAGTAAACCCAA
*
360153 CTTTAATTTTCAATGAAATTAAATTAAAGT-AACCCCA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAAACCCAA
360190 CTTTAATTTTCAATGAAATTAAATTAAAGTAA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAA
360222 CCTCAGCGGC
Statistics
Matches: 103, Mismatches: 2, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
37 67 0.65
38 2 0.02
42 4 0.04
43 30 0.29
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (38 bp):
CTTTAATTTTCAATGAAATTAAATTAAAGTAAACCCAA
Left flanking sequence: Indices 359573 -- 360072
CACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAG
TTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCGGTCAATCGCTTATTCAATGGGT
GGTGCTTCTGCCAAAGCTTCTGACTGTGATGCTCGCTCTCGAAATGGAAGGATTCACTGAGCCGA
ATATAGCTACCTTCCAATCTATGGTGGAAAGTATGAATCTCTGTTCCTGTGGTTTGTTTCGAGGT
GTATGGGAAGGAGTGATGTTCTTTGTTAATAGGTGTAAAGAGAGTTTCTAGATCTCACCTTTTGG
GTTCTTCTAAAGCAGGCCAGAAATGAGGTCGACTCTTCCTCTGTCTCTACCTGCTCCACCACGGC
GGAATTGATTCATTGATTCCAACTCCTCCCGGTAGGTCGGAGTTGCCCTCCTTATTGGGAGGGCT
TTAAAGGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGAAC
Right flanking sequence: Indices 360222 -- 360721
CCTCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGAC
AACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGCCACAAATAATTCCGATAGGGTCCGAACGAA
GTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAATGCGCGAGTGTGTGTCTCAG
GCCCCAACGATGGGTGGTGACCGAGGTTGAGAAGGGGTGGATCCATCCTGGGAAGAGTTCGAGAG
AGGGGAAAGGCTAGACCTGAGTACCTTCCAACAATGGCGTAAAAAGCGCATATGTATATTAGGAA
AAGGCGGAGGTAATAATCTGTTCAGGTATTGATCTCTCATCTGAGCACGTACGAACGTAACGACG
CAGTGAAACTTTGGGGTGGGGGGCCTCCGGCCCCCCCCGGGCCCAAAGGGTCCGAAGGACAACTC
CGACCAAAGGGAGGAGTGGGGGGAGTGGGGGGAGTTGGCCAGCCT
Found at i:360160 original size:37 final size:37
Alignment explanation
Indices: 360116--360223 Score: 216
Period size: 37 Copynumber: 2.9 Consensus size: 37
360106 CCTAAGTAAC
360116 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
360153 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
360190 CTTTAATTTTCAATGAAATTAAATTAAAGTAACC
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACC
360224 TCAGCGGCCG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.36
Consensus pattern (37 bp):
CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
Left flanking sequence: Indices 359616 -- 360115
CCGAAGGGAGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCG
GTCAATCGCTTATTCAATGGGTGGTGCTTCTGCCAAAGCTTCTGACTGTGATGCTCGCTCTCGAA
ATGGAAGGATTCACTGAGCCGAATATAGCTACCTTCCAATCTATGGTGGAAAGTATGAATCTCTG
TTCCTGTGGTTTGTTTCGAGGTGTATGGGAAGGAGTGATGTTCTTTGTTAATAGGTGTAAAGAGA
GTTTCTAGATCTCACCTTTTGGGTTCTTCTAAAGCAGGCCAGAAATGAGGTCGACTCTTCCTCTG
TCTCTACCTGCTCCACCACGGCGGAATTGATTCATTGATTCCAACTCCTCCCGGTAGGTCGGAGT
TGCCCTCCTTATTGGGAGGGCTTTAAAGGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGA
ACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAAC
Right flanking sequence: Indices 360224 -- 360723
TCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACAA
CTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGCCACAAATAATTCCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAATGCGCGAGTGTGTGTCTCAGGC
CCCAACGATGGGTGGTGACCGAGGTTGAGAAGGGGTGGATCCATCCTGGGAAGAGTTCGAGAGAG
GGGAAAGGCTAGACCTGAGTACCTTCCAACAATGGCGTAAAAAGCGCATATGTATATTAGGAAAA
GGCGGAGGTAATAATCTGTTCAGGTATTGATCTCTCATCTGAGCACGTACGAACGTAACGACGCA
GTGAAACTTTGGGGTGGGGGGCCTCCGGCCCCCCCCGGGCCCAAAGGGTCCGAAGGACAACTCCG
ACCAAAGGGAGGAGTGGGGGGAGTGGGGGGAGTTGGCCAGCCTCG
Found at i:360279 original size:33 final size:34
Alignment explanation
Indices: 360233--360302 Score: 115
Period size: 33 Copynumber: 2.1 Consensus size: 34
360223 CTCAGCGGCC
*
360233 GGGTCCGAGCGAAGCGAGGACAACTCCG-CCGAA
1 GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
*
360266 GGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
1 GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
360300 GGG
1 GGG
360303 AGGAGTGGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 26 0.76
34 8 0.24
ACGTcount: A:0.29, C:0.27, G:0.37, T:0.07
Consensus pattern (34 bp):
GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
Left flanking sequence: Indices 359733 -- 360232
GCTCGCTCTCGAAATGGAAGGATTCACTGAGCCGAATATAGCTACCTTCCAATCTATGGTGGAAA
GTATGAATCTCTGTTCCTGTGGTTTGTTTCGAGGTGTATGGGAAGGAGTGATGTTCTTTGTTAAT
AGGTGTAAAGAGAGTTTCTAGATCTCACCTTTTGGGTTCTTCTAAAGCAGGCCAGAAATGAGGTC
GACTCTTCCTCTGTCTCTACCTGCTCCACCACGGCGGAATTGATTCATTGATTCCAACTCCTCCC
GGTAGGTCGGAGTTGCCCTCCTTATTGGGAGGGCTTTAAAGGGCCCTTTAAAGGAGCGCCGTCGC
GAAAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAACCTTTAAT
TTTCAATGAAATTAAATTAAAGTAACCCCACTTTAATTTTCAATGAAATTAAATTAAAGTAACCC
CACTTTAATTTTCAATGAAATTAAATTAAAGTAACCTCAGCGGCC
Right flanking sequence: Indices 360303 -- 360802
AGGAGTGGGGGGAGTTGGCCACAAATAATTCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCTACCGGGAGGAGTGGGGGGAGTTGGAATGCGCGAGTGTGTGTCTCAGGCCCCAACGATGGGTG
GTGACCGAGGTTGAGAAGGGGTGGATCCATCCTGGGAAGAGTTCGAGAGAGGGGAAAGGCTAGAC
CTGAGTACCTTCCAACAATGGCGTAAAAAGCGCATATGTATATTAGGAAAAGGCGGAGGTAATAA
TCTGTTCAGGTATTGATCTCTCATCTGAGCACGTACGAACGTAACGACGCAGTGAAACTTTGGGG
TGGGGGGCCTCCGGCCCCCCCCGGGCCCAAAGGGTCCGAAGGACAACTCCGACCAAAGGGAGGAG
TGGGGGGAGTGGGGGGAGTTGGCCAGCCTCGGCCTGCTCTAAAGGGCGGCGAAGTAGTGTGTTTC
GGAGGTTTCCGAAGTAGAGTATGCGCGTGAATATACGGCCAGACT
Found at i:362957 original size:22 final size:23
Alignment explanation
Indices: 362923--362966 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
362913 AAACACTTTT
*
362923 AACTGCCGGCCTACCGGGAGGAC
1 AACTGCCGACCTACCGGGAGGAC
362946 AACT-CCGACCTACCGGGAGGA
1 AACTGCCGACCTACCGGGAGGA
362967 GTGGGGGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.25, C:0.34, G:0.32, T:0.09
Consensus pattern (23 bp):
AACTGCCGACCTACCGGGAGGAC
Left flanking sequence: Indices 362423 -- 362922
GCTCTTTTCTTTTTTTCCGCATCAACCCTCCTGATTCCTGAAATTCTGGTAGTAAGTTAAGCTGT
AGTGGCCGGCCCTAGTGGCTGAGGGGGGGGGGGGAGATAAAGGGAAGGGGAAGGTAAGGGGGAGG
GTCAGAATGGCCGAGCATTTGGTACTCACTCCGTGTCCTCCATTCAGGGTCACCAGATGGAACCA
AAGCAAAACTAAACCGATAGTTGGTAGCACGAACAGAGAGTAATTAAGCTCTTTTAAAGGTCCAA
CCCACTTATTTATTCACCCTTCGTGGGGCCAGCTTCTAGGGTCCGAACGAAGTGAGGACCACTCC
GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACC
AGCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTT
Right flanking sequence: Indices 362967 -- 363466
GTGGGGGGAGTTGGAAGACAACAAATAATCCCTAGGGAGGGCTTTTAAAGGGTCTGATAAACGCA
ACTCAATCTACCACCCACTTTAAAGGGGCTGATTGATTGCAAAAATCACTATATAGAATCAAATC
TCGGCTTCCTCTTGAGCGGTTTCCCCCCATACCGCAGCAGCTACAGGTTCCGCTGGATCCCGCCC
GGTTCATCGACGATTCCATGGGATCTCACTGCGCCCCACGTAGGGGCGAGGACGCCTCTTTCTGG
GCGTTTCAATTAATTTTAAATTAAAGTAAATTAAAGGGTCCCTCCGATCGGATTTCTGAAGGAAG
GGTGAACAAAACTAGTCCGACGTCTCTCCAGGAGCGGAATAAACGGAGGGACATACACACACATA
TATAGATCTATGTGTGTAGAATACTTGGTCGGGGACGGAGGAACCTGCCATGAATGATACAAGGA
ACCCCCCCTTCTATTGGGGGGAAGGAACAAAAAGAGACGTTCCAT
Found at i:364838 original size:29 final size:30
Alignment explanation
Indices: 364787--364846 Score: 77
Period size: 33 Copynumber: 1.9 Consensus size: 30
364777 AACTCCCCCC
*
364787 ACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCA
1 ACTCCTCCCTTCGG-A--CGGAGTGGTCCTCCA
364820 ACTCCTCCCTTCGG-CGGAGTGGTCCTC
1 ACTCCTCCCTTCGGACGGAGTGGTCCTC
364847 GCTTCGCTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 12 0.46
33 14 0.54
ACGTcount: A:0.12, C:0.38, G:0.22, T:0.28
Consensus pattern (30 bp):
ACTCCTCCCTTCGGACGGAGTGGTCCTCCA
Left flanking sequence: Indices 364287 -- 364786
GATAGATGTAGGCCATCTCCTCTGTTTACTCCCCTCCCTCACAAAGGCACCTCCCGAGATTCGGT
ATGTATTCCGATCCGATCAACTATAGATAGAAATGGTAGCTCACCGGGATTGAGAGGATTTGGTG
GAAACAACAAACGTGGCTCGTTCGACCCGGTGGATTCAAGCTCCATCCCGCCAATCGACTTTTTA
GTGGAAAACAGCTCCAAACATGGACAAGAGTTACTTCTGTTTTGTTTCTTGGCAGCAGTTGATTC
TAATTACGTATCAAAGAGGTGGCTTCTTTTTGGGTTAAGTCTAGGTTGATTCATTGATGGTTCCA
CAGCAGCAAGGTAGGGCATCTACGCGAGGCCGGAATCGAGCCGCCCGACTTCAATAGCTGGCTGC
ACTGCAGAAGTTCGGGCAGGGTGGCCTTCGGTCATTTAAATTAAATTAAATTCCCTAGGTTACGT
TAATTCTAAATTAAGCAGTTAAAAGTAGCGCTGCCAACTCCCCCC
Right flanking sequence: Indices 364847 -- 365346
GCTTCGCTCGGACCCGGCCGCTGAGGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTAC
TTTAATTTAATTTCCTTGAAAATTAATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGA
CCGCTTTAAAGTCACTTTAATTTCATTGAAAATTCAGTTCTTTTAAGGGCAGGGGGGCGCTACGC
GCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCAACTCCGAATTCCGAGAG
GGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGAGCGCTTAAATTCA
ATCAAATTACCCGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCACT
CCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGAT
AGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGA
Found at i:364916 original size:35 final size:35
Alignment explanation
Indices: 364870--364938 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
364860 CCGGCCGCTG
364870 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
364905 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
364939 GATTAACCGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (35 bp):
AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
Left flanking sequence: Indices 364370 -- 364869
AACTATAGATAGAAATGGTAGCTCACCGGGATTGAGAGGATTTGGTGGAAACAACAAACGTGGCT
CGTTCGACCCGGTGGATTCAAGCTCCATCCCGCCAATCGACTTTTTAGTGGAAAACAGCTCCAAA
CATGGACAAGAGTTACTTCTGTTTTGTTTCTTGGCAGCAGTTGATTCTAATTACGTATCAAAGAG
GTGGCTTCTTTTTGGGTTAAGTCTAGGTTGATTCATTGATGGTTCCACAGCAGCAAGGTAGGGCA
TCTACGCGAGGCCGGAATCGAGCCGCCCGACTTCAATAGCTGGCTGCACTGCAGAAGTTCGGGCA
GGGTGGCCTTCGGTCATTTAAATTAAATTAAATTCCCTAGGTTACGTTAATTCTAAATTAAGCAG
TTAAAAGTAGCGCTGCCAACTCCCCCCACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCAACTCC
TCCCTTCGGCGGAGTGGTCCTCGCTTCGCTCGGACCCGGCCGCTG
Right flanking sequence: Indices 364939 -- 365438
GATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCACTTTAATTTCATT
GAAAATTCAGTTCTTTTAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCC
CTGCCCTCCGATAGGAGGGCAACTCCGAATTCCGAGAGGGAGGAGTTGGTCCGATAGGACCACTC
CGAATTCCGAGAGGGAGGAGTTGGAGCGCTTAAATTCAATCAAATTACCCGGTTTTCGCGACGGC
GCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTCGGAATTATTTGTTGTCTTCCAACTCCCCCAACTCCGACCGATAGGGAGGA
GTTGGAAAGCTAAGCACTGCTTCCCTAGGCCCCCTAGGGCTTCGC
Found at i:367960 original size:35 final size:35
Alignment explanation
Indices: 367919--368256 Score: 649
Period size: 35 Copynumber: 9.7 Consensus size: 35
367909 CCTCCGATAG
* **
367919 GAGGACCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
367954 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
367989 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
368024 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
368059 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
368094 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
368129 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
368164 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
368199 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
368234 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
368257 AGGAGTGGGA
Statistics
Matches: 300, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 300 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 367419 -- 367918
TCGACCAAGGATCACCCATTCCTCTAGTGCTCCACGCCTAGTTGAGTGTGGCACACGGCAGGGGG
TTTGGTGGTCTTATTGGCGCATACCACGGTTGGGTCAGTGACTGAGGTGAAGTCGTAACATGGTA
GTCGTAGGGGAACCTGTGGCTGGATGGAATCCGTTAGGAAATATACCGTGCCGGAACCAATACTG
ATTCTTGAAAGAAAAGAAAGTTCCATGGAGAAAGGAAAAGTAGGGAGCTCAGCCCAGGTGTCACT
CAGTCCCATTCCCATCGGTCCCATTTCCATCACGTGAAGGGGAACTTCTCGTTCATCTTCGTGAA
GGAACCAATCTCGTCTTTTCCTTTGAAGGAATCAAATAGTGGGATCGAGTGGAAAATTTGGTCAC
GTAGATCGAATAGGGGCTCTCTACCCTAGTTAGGTGCTTCCCTTCCCTCTCTTTCGGGCGAGCGA
TAGCGAGCCACTTACCCCCGATAGGGGGTAAGGGTCCTCCGATAG
Right flanking sequence: Indices 368257 -- 368756
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCGAAGGACCACTCCGACCTACCGGGAG
GAGTTGGGGGAGTTGGCCTAAACCCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGC
CCGAAAGAGAGAGAAAGGAAACACCTTACACCTTAGAAGGGAAGCACCTAACTAGGGAAGAGAGC
ACCTAAACCCAACTCCTCCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCG
GTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTC
CTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGCCC
TCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTT
Found at i:368266 original size:9 final size:9
Alignment explanation
Indices: 368254--368289 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
368244 CCGACCTACC
368254 GGGAGGAGT
1 GGGAGGAGT
368263 GGGAGGAGT
1 GGGAGGAGT
*
368272 GGGGGGAGT
1 GGGAGGAGT
368281 GGGAGGAGT
1 GGGAGGAGT
368290 TGGTCCGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.69, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 367754 -- 368253
TCGTCTTTTCCTTTGAAGGAATCAAATAGTGGGATCGAGTGGAAAATTTGGTCACGTAGATCGAA
TAGGGGCTCTCTACCCTAGTTAGGTGCTTCCCTTCCCTCTCTTTCGGGCGAGCGATAGCGAGCCA
CTTACCCCCGATAGGGGGTAAGGGTCCTCCGATAGGAGGACCACTCCGACCGATAGGGTCCGAAC
GAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTC
CGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGAC
CTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 368290 -- 368789
TGGTCCGAAGGACCACTCCGACCTACCGGGAGGAGTTGGGGGAGTTGGCCTAAACCCCTTACCCC
CTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAAGAGAGAGAAAGGAAACACCTTACACCT
TAGAAGGGAAGCACCTAACTAGGGAAGAGAGCACCTAAACCCAACTCCTCCCTATCGGTCGGAGT
GGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTC
GGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCAC
TCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCA
CTCGACCGATAGGGAGAGGGTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTT
Found at i:368522 original size:35 final size:35
Alignment explanation
Indices: 368476--368595 Score: 213
Period size: 35 Copynumber: 3.4 Consensus size: 35
368466 CCTCCCTATC
368476 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
368511 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
** *
368546 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
368581 GGTCGGAGTGGTCCT
1 GGTCGGAGTGGTCCT
368596 TCGGACCAAC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 82 1.00
ACGTcount: A:0.11, C:0.28, G:0.34, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 367976 -- 368475
GTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCT
ACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACC
ACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
GGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCGAAGG
ACCACTCCGACCTACCGGGAGGAGTTGGGGGAGTTGGCCTAAACCCCTTACCCCCTATCGGGGGT
AAGTGGCTCGCTATCGCTCGCCCGAAAGAGAGAGAAAGGAAACACCTTACACCTTAGAAGGGAAG
CACCTAACTAGGGAAGAGAGCACCTAAACCCAACTCCTCCCTATC
Right flanking sequence: Indices 368596 -- 369095
TCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGCCCTCCTATCGGAGGGC
CAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTG
CCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCT
ATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTT
CGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAG
GGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTC
Found at i:368791 original size:82 final size:82
Alignment explanation
Indices: 368700--369673 Score: 1948
Period size: 82 Copynumber: 11.9 Consensus size: 82
368690 AGGGAGAGGG
368700 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
368765 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
368782 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
368847 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
368864 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
368929 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
368946 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369011 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
369028 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369093 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
369110 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369175 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
369192 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369257 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
369274 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369339 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
369356 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369421 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
369438 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369503 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
369520 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369585 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
369602 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
369667 CTCCTCC
66 CTCCTCC
Statistics
Matches: 892, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 892 1.00
ACGTcount: A:0.16, C:0.36, G:0.23, T:0.26
Consensus pattern (82 bp):
TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
CTCCTCCCTATCGGAAT
Left flanking sequence: Indices 368200 -- 368699
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGG
GAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCGAAGGACCACTCCGACCTACCGGGAGGAGTTGGG
GGAGTTGGCCTAAACCCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAAGA
GAGAGAAAGGAAACACCTTACACCTTAGAAGGGAAGCACCTAACTAGGGAAGAGAGCACCTAAAC
CCAACTCCTCCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCC
TCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGT
GGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGG
Right flanking sequence: None
Done.