Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065220
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 473561
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Found at i:15467 original size:18 final size:18
Alignment explanation
Indices: 15446--15488 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
15436 CAACCTTGTT
15446 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
15464 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
15482 GACTATG
1 GACTATG
15489 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 14946 -- 15445
TTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGG
AGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTA
CCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTC
TCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAG
TCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGG
AGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAA
GCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGA
TCGCCCTCCCAATTCGAAGTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 15489 -- 15988
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTTAGG
TCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCATAGGGCGACCGGGCCAGGC
CGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGG
GCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGATAGGCATGGTTCTGTAGTCAAAGCAAC
TTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACT
CTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTT
CTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCC
GATTGACAGAACGTTCCGCTACTGACACTTGAAAAAGAAGCTTTC
Found at i:33984 original size:14 final size:14
Alignment explanation
Indices: 33953--33989 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
33943 CTGGCTTCCA
33953 GGAGCTG-CA-CCT
1 GGAGCTGACACCCT
*
33965 GAAGCTGACACCCT
1 GGAGCTGACACCCT
33979 GGAGCTGACAC
1 GGAGCTGACAC
33990 TTCCAGTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 6 0.29
13 2 0.10
14 13 0.62
ACGTcount: A:0.24, C:0.32, G:0.30, T:0.14
Consensus pattern (14 bp):
GGAGCTGACACCCT
Left flanking sequence: Indices 33453 -- 33952
CATATGCCCTTGCCTCTCTTCAACACTTCACGAACTCTTCTCTTGGATCCTCATCCACATAGGGG
CTCAGGCAGCCAGACGATAAGGCTTTGGGAAAAAAGACCTTCCTTTAAAATGAAAGGATCAAATC
CCAAGGTATTCGACCAGGCATTCGCGGAACCTTATATTCTCGGAGATCCATCCGCTCTTCGGGCA
GATATTGATTGATTCTAAAACTCTTCCATAGTGGCTTAGCCGACCTTCTAGCTACACCTTCGAGA
CCGTCGAGAGATTCTCTTTGAAGACTGGATCACCACCTTCTACCCTATGGTTTACAGAAGCTTTC
TCGCTACCAGAGACTTCAGGTGCCCATTGGACTGATTGATCATATCTTCAGGAGCTAAACTGCCC
CTTCTGGTGCTGCACTTGCGGACATATTCTTTAAACAAAGGGGCACTACTCTGTCGGTCGGGGGA
TGACCCCTCCCTTCACCGCTACACCTGCTTTACGTCTGGCTTCCA
Right flanking sequence: Indices 33990 -- 34489
TTCCAGTTGACAAACAGCAGCTGAGCGAGCTACTCGAGCTACACTTTCGAACTCTTCGAAGAGAT
ATTCTCTTGATCTTACATTTAGTTAGGATGCCCCTTACCTTAGCCGGACAGGCTTCTAGCTCTAG
CATTGATTCCAAATCGAAATCTTGGATAAAATTCTTTTGATTGAGAATGATTGAAACTCATCCGA
AAAACGTGATCCTCGGCGCATATCCCTCTACCTATGAGCAGTCCGAACAGGCTTTCATGGTTGGC
TTACTAGGGAATCCTATACCAGTTTTTTTTACCAGAACGAAAGGCTTACACCCCTCTCTCTCTAC
AACCACTAATACGAGATTCTTTTGGGAATAGATCACACGATCCCACGCACTCTCACAGGATATCT
ATCAATAGGTCTCTTCGGGGGAAGTACACACCTGTCGCGTTTAATGCACATCAATCAAGACCGGT
TGGCTATCTGTTGTCGCATTTAGTGTACATTCGAGAGGAGGTTTC
Found at i:63259 original size:17 final size:17
Alignment explanation
Indices: 63237--63281 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
63227 TCGGGAAGAG
63237 AGGAAATCTGTCTTTAT
1 AGGAAATCTGTCTTTAT
* *
63254 AGGAAATTTATCTTTAT
1 AGGAAATCTGTCTTTAT
*
63271 AGGGAATCTGT
1 AGGAAATCTGT
63282 GCCCTTTGTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (17 bp):
AGGAAATCTGTCTTTAT
Left flanking sequence: Indices 62737 -- 63236
CTTGGAGAACGCGAAGCCTTTTTTTCTCGGTCGTCCTTCTCTAGGTACAAAAAGGAATTTACGGG
ATATCTCCAAAATTCGATGTACTTCTTCAAGTGTGGGACACATCTCATGTTTGCCGAATCTAAAA
ACCATCGTCTTTGCATCCCAACACTTCACTGCGGCTATGATCGGATCCCAGTGTTGGTTCACTTT
TTATCCTCCACCAAATCTTCTGAGCTCCTGTTCTCAATGATGTTAAGCAGCTCTTGATCGCAGCA
ATCATGCCTTCGAAGGTACGCTTTTTTCATTCAACTGTGCTTGAAAGAGAGAGGATATGATATAA
GGTAAGCCCCAATTCCACTGAAAGATTCAATTCAGTCAGCTTGGCTTTTTCTCTAGTTTGCCTTT
TTGTCTACCTTCTTTAGTCAATGTCGCATTTCGAGTGCTTGGTTAGATCTCCTAATGGAGAAGAT
GCGGTGAATCAATCAGTATTAGCTAAGGAAAGCATTCGGGAAGAG
Right flanking sequence: Indices 63282 -- 63781
GCCCTTTGTTTGGGTCTGAAAGTGCAAGACTAGCTGGACCCGGACTGACTAATCGCTAAGAGCTC
GCCCCGAGTGCTAAGTACGGCATTCAGTAAGAAGTAAGCCAAGTTCAGTGATCCTCGAGAATAAA
CTATCAGGCGGAGGAAAGAACTGATGACTCACATCCCACAACACAAGAAGGATGGAAAGTCGTGG
AATTGATCGAAGTTAGCCAAGTTCTCTTAGCCGTTACGTTAGGGTGACTCGAGAAAGCTTGAAAG
AATAAGATACGTAGAGCGTGAACCAAGGTTCATAGGCGGATCAAAGTCGAATCTTGCAGATCCTA
GTTCGCTTTCTAATCGCTTTCGGGACCAGTCTTCAATGGCATGAAGCTTTAGTGGCATAGAATTG
GCTGCCTGATCGGACAGATGAAAGGAGAACTATCTGGTGAGGCATCTGGATTTGATTCGGGTCGG
TTAAAGCTTGAAAGGGAGTTCGTGGCCTACTAGGAGTTCTGTTTT
Found at i:72790 original size:18 final size:18
Alignment explanation
Indices: 72750--72792 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
72740 ACCGCCCTGC
72750 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
72769 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
72786 CATAGTC
1 CATAGTC
72793 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 72250 -- 72749
TTGAAAGCTTCTTTTCAAGTGTCAGTAGCGGAACATTTTGTCAATCGGGGAAGGTTTTTGGTGAC
AACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACG
ATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGG
AACCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACC
ATGCCTATCTGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTC
CTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTAT
GCGACTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 72793 -- 73292
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:142603 original size:20 final size:20
Alignment explanation
Indices: 142578--142615 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
142568 TCTTGTTTTA
142578 GTAGCTAAGGAGTT-CTAGTT
1 GTAGCT-AGGAGTTGCTAGTT
142598 GTAGCTAGGAGTTGCTAG
1 GTAGCTAGGAGTTGCTAG
142616 CAGCTATGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.24, C:0.11, G:0.34, T:0.32
Consensus pattern (20 bp):
GTAGCTAGGAGTTGCTAGTT
Left flanking sequence: Indices 142078 -- 142577
TTTTCTCCAACCTTCGATGATCCTCCTGCAGGCAAATCATCGAAGTCAAGAAAAGAAGAAGTGAT
GGGCCAGGCAGCAATGCTAGGTCCGAGGAAGAGACCTGTAGGTTTGGAAAGCCTGTCGATCCATC
CTGATTAACTTACGCAATTTCTGACTAGAGAGAGGACTTAGATCGGAGAGGAGCAGCTCTTTTCT
TTTTAACAGAAAGCAGTGATGAATGGGACAGAGCTGCTACAATAGCTTCAAGCTGGAGCTGCTTT
ATGTATTGGAGCAGAGGTGGCAGTTCAGACAGCAGCAGGAGCAGGACCAGCAACTAGGGTTGTTT
TGTTCACAGAGCAGCCGTCTTTCCCTCTCAAGCGGAGAAGACTGGTTACATGTCCGATCCGGTAG
GGATGGTTCTTCTCGACAGATTAAGCTACTTACTATAGTTAGGGTATTGAACAACGGGTGGCAAC
TTGCCCAATAAGAAAAGTCGCCCGAGTGAAAGAGCTCTTGTTTTA
Right flanking sequence: Indices 142616 -- 143115
CAGCTATGAGTTCCGAGTTGACGAGATCATAAACAAATCTGTCTGGGACTGGTGACACCTGTACC
ACACTCTATGGCACACACCCCTCGTTGTAGTAGACGAAGATGGTCACCTAGGATAGGCAGACAAC
CCTGAACCTTAGAAAGTCGCCGGCGGAGACGCTACGGGAGAACCGCCTAGGATGGCGTAAGAGAC
TCGAGCATCTCTTTCTTCAATTTGGGTTTGTGCATTTGTCTTTCAAATAGGTCAAGGGTTCAGAC
AGGAGATGTGCTTTAGCCAAAGAAGCTTGGGCACCTGCTCCAATAAAGCTAAGAGGACTAGCTAC
GGTGTGGGCACCAGATCCACTCAGTGAGGCCGGGCAAGACTTTACGTCCGATATAGTAGTGTCAG
ACATTTGTCATACTTAAGCAGTGGGATAGACTCCTTCAAATGGAAAGATAGGAGATGTTTAGCCA
GTACAAGCTGTGTTTGTGGCACCCATCCGGGTGGAGTAGCCAGGA
Found at i:153557 original size:18 final size:18
Alignment explanation
Indices: 153534--153568 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
153524 GAAAAGCTGT
153534 TAGCCTTTTATGCCCTAC
1 TAGCCTTTTATGCCCTAC
153552 TAGCCTTTTATGCCCTA
1 TAGCCTTTTATGCCCTA
153569 GCCTTCCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.40
Consensus pattern (18 bp):
TAGCCTTTTATGCCCTAC
Left flanking sequence: Indices 153034 -- 153533
TCACTCCTTTTGGTCCGGGTATCTGCCCTCTGATTCGGTGGAGTAACTGCCCGCCCTGTATCTGG
TGGTGCCTGTCTGGCTGGCTTCGGCTTGCTGAACGTTGTTATTATTCTTTTTAGGGTCTGGTGGT
CTTGCTGCAGTCAGCGCTCGCCTCATTCAATCCCCACCTCTCTGTATTGCTAGCACAGAAGGCTC
TCTCTGTTCTTACTACCTACGGGATAAAGCCAAGCCATGGCCTCCAGGGTTGGTTGTCTTACTCG
AGGTTCTGCCCGCTCCATCGATATCTTTCTTACTACTTTCCTTGCCTTGGCAAAGTCTACCTGTA
CGTTACGATTTCAAGCCTTTCCGAACGCCCGTTAGAACTGAACTTTGAAACCGGTAGCTTTGATG
CCCGACGCTTCGTCATGCCAACCTTGAGCCCCTTTATTTAGCCCTGTACTGTGGTGAAACCGGAA
CTTATGGCTGAGTGTTTTTAGCCGCTTTTGACTCGGAAAAGCTGT
Right flanking sequence: Indices 153569 -- 154068
GCCTTCCCTAGCCTTGAAAACGATTATGCTTTCGTAATTAGTTCCAGCTTAGCTTCGTCATGCCC
ACCGGAAGGAACGCCTTCACTCACGCCAACAACAACAACAACCTCTGCTTAAGCAGCCTACCTTG
AACCAGCGAAAGTTAAAATCACATTTCTTTGCCTGAGAGAGAAGAGCGTCAGCCCGCACGGTCCC
TGTGAGCAGCGGATTGCTTCCGCGTTGAGCCCTTGGCACTGACCTTTGAGACATCGTTCCCGTAG
CACCTTATACCTGACCTTGGAATGTCACTCTGCCTCACAAAGATCGTCTCTCTGGCACTTCCGCT
TCCGGGGTTGGGTCAAAGCTATCGGTCGATCTCGTGGCGAGCCTTCCCCACCTACCTTACCTGGA
CCACCGTTAGCCCACCAACTTCCTTTGCAACCTGAACGCCCAACAACTTCCACTTCCACTGGGAC
TTGACCACCAACAGGCACTGGCTCACCTCACTACGCTCCGAAAGC
Found at i:177410 original size:22 final size:23
Alignment explanation
Indices: 177377--177430 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
177367 GGAGGTTACT
177377 CTCGT-CCTACACTAG-GTCACC
1 CTCGTCCCTACACTAGCGTCACC
* *
177398 CTCGTCCCTACACTAGCTTCTCC
1 CTCGTCCCTACACTAGCGTCACC
177421 CTC-TCCCTAC
1 CTCGTCCCTAC
177431 GGTCGAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 5 0.17
22 17 0.59
23 7 0.24
ACGTcount: A:0.15, C:0.48, G:0.09, T:0.28
Consensus pattern (23 bp):
CTCGTCCCTACACTAGCGTCACC
Left flanking sequence: Indices 176877 -- 177376
GCTCCTCCGGCCGCCTATGGAAGTAGTAGAGCCACCTAAAGTGCTTTATAGAAAGTAGTCCCATG
CATTCCTACAAATGTAAATGGTATCGCTAGACGGTAAGGAAAGAGAAAGGGCCTTTCAGCCTCTG
CTTGAGTTCCTCTTTTTTATGTTTATGGTCTTTCTCGAGGCGCTGCCTACCTACAAGGCAAGATC
AATTGAACCTTCACCTTAAACTGCGACCGGTCTAAATGCAGGCGCTTCGGGCACAGTAGTTGTTA
TAGATCAATCCATGGGAGTCTCCGACTTGCTACCCCTTCTCCAGAGCTGCAAAAGAGTTTGACTT
CTATTATCTTACGTATAATTTCTAGCAATACTCTTAGTAACTCTCTTTTTATAATATCTTATAAA
AAGTCTTTTGGCATACCAATCAGTGAAACTCTAAGCTATCACAGCTACATCCACTCATAAATGCT
CCGCTGCTCGGGGAACACTCGTTACGAAGAAAAGGGGAGGTTACT
Right flanking sequence: Indices 177431 -- 177930
GGTCGAGTTGCCCCGCCCATTTCCTCTCAGACAAGCACGTAACCATCCCCAGTCGAGCTAGCGGC
TCTATCTTCTACTGATATCGAGCTAGGTCCAGATAGCTAAATTGATTGTATGACCATTTCTGGAC
GTTTCTACGGTTTATGGCCAGGGATGCAATCCTATCGATCGATTTCCCTATAGCTTTTTGCCCTC
TCGGCGTAAGATTTTGATTGGAAGATTGGGTGAAGCCTAGCTTCTTTCTTTCTTGCCTCTGCCAA
AACCAATAGGAATTGGAGCTCCTTCTGAGTAGAATGAGGAGAGTGCAGACGCTTTCACAGATGCC
CGGTATCTTCCGGAGCTGTAATCTTTACACACTAAGTAAGCAAGCTTTGGTTGGCTCTATTAACT
CAAGATATCCATCATCCCGCGCTATACGGATCGAAGCCTTCCACTTTAGGAATAGGTTTAATTGT
TTAATGTGAACGCTAAGGAAGAGAAATCCTTACCGGAAAGCCGGG
Found at i:220638 original size:21 final size:21
Alignment explanation
Indices: 220613--220660 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
220603 AAGGTTGCGC
220613 ATCATTTGGATTGAAAGGGGG
1 ATCATTTGGATTGAAAGGGGG
220634 ATCATTTGGATTGAAAGGGGG
1 ATCATTTGGATTGAAAGGGGG
220655 ATCATT
1 ATCATT
220661 GATAGGTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.06, G:0.33, T:0.31
Consensus pattern (21 bp):
ATCATTTGGATTGAAAGGGGG
Left flanking sequence: Indices 220113 -- 220612
ACGGCGGAGAGATTCCCGTTTTGCTGGGCATCTTGGATCCAGTACCGCAGCATAGCTTCCACCAA
TCCTTTATCAAAAGGGGAGTGTGGGTCATTCAGATTTAAACGACTCATAAAGTCGTTGATAAATG
AAAGAGCTTCGGTCCTTATGGCACCCTCGCGAAAGGGCGAGTCTGCCAATATTTGAGTGAGCCGC
TCAGTTGTTTCGCTCATTAACAAATTGACGAGTTGCTCTAAGAGATTCGCCTTAAACTCTAACAG
GCGAAGATCGAAGAGCTCATTGCTCAGGACATTACGGTAGTGTCCAATGGTCAGGGTGTCATCGA
GAAACCCTCTGACTAAGGCTTCGTACTCGCCAAAGTTCATTTGCGGTGGCAAGCCGTCAATCAAA
CGGTTCTCGAGAAGTCGTATCCGAGCAAAGAGTTCCAATTCCGTCTCTTGGTTGAGTATACGAAA
TTGATCGACAACGTCGAGAGGTATTGGATTATTTAAAGGTTGCGC
Right flanking sequence: Indices 220661 -- 221160
GATAGGTATATTATGAATAGAATTGGAATCTGCGATGGAGCCAGAGTTCACGGCCAAAGAGTCCG
AAAAAAAATGCATCAGATCGATGTCAGCAAAAGGCGCGGTTACAAAAAGCCAATTCCAAAAAAGA
AAATAAAAGTAAGCGAAAGCAAGCCTAACGAGTGGTCTACCTAAGAAGAAGATGCTCATAGAATG
AAATATTTGATAGAAAATGTGACGGAACCTAGGTATCTTCATGATAACTTTTTTTTTTTTCCTTT
CTTAAGAGACTCCGGACGCTCCTTGTCCTAAGCCCCAGGCATCCGGTTACCTTTGTGGATCTCCG
CCACTTTTGCACTAAGTTACTTACGTTAAGGTCTTCAACAGGTACACTGAACACCGACCTAATCA
TGACGAACCGGGAAGTGTCACAATCTGGTACACCTCTCCTCTATCTATGTTATTCTTTGTGTGCT
AGTGGATCGAACTAGAACCTTTTCTTTAAAGAGCTCGAATAAGTA
Found at i:245583 original size:15 final size:16
Alignment explanation
Indices: 245541--245583 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
245531 TCCTACCTTA
245541 ACAGTCGATCATGCGCTC
1 ACAGTCGATCATGCG--C
*
245559 ACACTCGATCATGCG-
1 ACAGTCGATCATGCGC
245574 ACAGTCGATC
1 ACAGTCGATC
245584 TGTCCATCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
18 14 0.61
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.21
Consensus pattern (16 bp):
ACAGTCGATCATGCGC
Left flanking sequence: Indices 245041 -- 245540
TTGCATGAAAAAACTCAAAAAAGAATAGGTGATCGTAGGTCAGCCCGTGGGTAAGTTCCGGGCTT
TCATTGATATTTTCTCGTTCATGATCTCTAATCCTTTGAGTAGATTGGGCAGGGGTAAGACTATG
CACATAGCTTCGGTTCCGTCTTGTTTGCCAAGGAGATATGGTTGCTTTTCCTTCTTCAGTAGGCT
TTCCCGCGGGTTCGGTTACAGATAGGATACATGGGTCAAAGGGAAGGCTTGAGTTCAGAGACGAA
GTTGGCTTTGAAGGTACAAACTTTCAGACAGTTCCTTACTTTCTATTCTCTAATCTCGTATGGCA
GCTTTCAGTCCCATCTTCAGTTTCGGGATATTGCTCCTATGCCTCTTCGAAGTGAAGCCCTTATA
TCGAATGATTCAAGACATTTGATTTTATAATAGAAATGAGAGGACAGCCGAATTGACAGAAAATA
GTCTGAATTTGTTGATCAACTCTCTTTGTTGAAGGTCCTACCTTA
Right flanking sequence: Indices 245584 -- 246083
TGTCCATCCGACTACATTCACTGGGGGGTGAGGTTGTCCAATTTCAATTATGTGCCGCTCGTTGA
CATCTAGTTTCCATTGCCGGTGTGAGAGATCTTCCTTCGGTTCTAGTTAAGTATGGCAGCTTGAG
GTCTCCTATTTAACTTTCACCAGCCATTGGGAACTCAAATAAACTTTCATTTAACGGCAGGCGAG
AAAGGTTCTAAAAGAAAGAAAGGTAGAAGGGGGGTTTTCTCCCGTTTCGGGGTTCTCTTGTGGAC
TGGCTGTTGACTGGCCGGGAGAAAACCGGTGCTTTTAGCTTAAACGGATTTTCACTGGATCGGAG
CCTTTCGGAAATCCTCCCCTTTTGGCTTCACTTGAGCGGTTGACGCAATCCAAGAGGAAGAGGAA
GCTAAACCCGTGCTGACGAATAACCAAACCCCTTAATTCGTCGAGTAAAGTAAATAGGGAAGGTA
TAGGTTTGTTATGAATGACCCCGTATCGAATACAGGTAATAATAT
Found at i:274287 original size:14 final size:14
Alignment explanation
Indices: 274262--274295 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
274252 AATCGCTCAT
274262 CCGTCC-ACGAATA
1 CCGTCCTACGAATA
274275 CCGTCCTACGAATA
1 CCGTCCTACGAATA
*
274289 CTGTCCT
1 CCGTCCT
274296 CTAGCTTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.24
Consensus pattern (14 bp):
CCGTCCTACGAATA
Left flanking sequence: Indices 273762 -- 274261
GGATTAAAGCAAGGAAGCAAGAAAAGAGATAAGCGTTAGAGGGAGGTGGGAGGATTCACTCTTGC
TATGCCGCACTCTCATACTTTTGAGTAAGGAATTCCCTGCAAGGCAGTTAACGGCTGTCGGATAG
GGCATCGGGAAGAACATATGGAAAAGAGAACCTGCGAGTACTATTCAGTTAGGATGTGCCCCCCT
GAAATTGTTAGATATTTGCCTTTATGACTCGTCTTCTTTTATAGGGTCTATCCGGGGATACTAAG
CCTGGAATAAGTTTCGATCTATGGCAATTTCTTTGTAGTGGCCAGTTAAAGCTATCAGATATAGG
AGAGACTACCTACTTCAAGTTCAAGGCAGGCTAGCTCAGTACACGATTCCCTTCCTTTAATGTGC
AATTCCCGTCCTTTAAATAGAGCGACTTCCCGCTCTTCTGCCTGTCATCTGTCAACTGGTAACGG
TCGCATCTGTCCAGTAACTGTCCTATAGGCGGTCCAATCGCTCAT
Right flanking sequence: Indices 274296 -- 274795
CTAGCTTCTGTTATGAGTGAATTTCTATGGCCTATTTTATCTAAAAAGAAGCCCTGTGAAAGCGT
CTGTAATGGGGAGCGGTCCATTAACGTTGCTTAATTGGCCTTAGCGTTTCGCACTAAGTAAGCAA
GCTACCTTATTTATGTGCTCTAGTCGAACAAGCAAGCCAGCCTAGCAGAGTAAGCCTTCCCTCTT
CTCTTCACTGGCTCTGATCTCATCAGACTCGTATCCAGCCTCTCTTTCCTCGGTCTCGGTGCTCG
GTCCAGGAGAAGAGAAAGACTCGGATCCAGGGAGGGAAAAATACCGGTATCCCAGCTCCATTTCA
AGCCTAAGCTCTCCCTCCGCTTCTCGATCCCCAGCTTCCGCTGCTAAGCAACCATCTTCTCTCTC
TTCGTCTCCCACTCCTTCTCCCATCACTGGGTATTGGACACCAAGAGGCGGGTACTGAACCCCGA
GAGTGAAGGCGATTCGCCGAAACCACAAGTGTTATCACGTATCTA
Found at i:291519 original size:39 final size:39
Alignment explanation
Indices: 291465--291543 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
291455 CGATTTTCTA
* *
291465 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
291504 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
291543 T
1 T
291544 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 290965 -- 291464
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCAACCAGACTTAACATAAATGTAGTCACTGGAGCC
ATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCGGCTGGAACTGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 291544 -- 292043
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCAGAGAAGAGTTGAAGATGGTGCAACATCG
AATCCTGTCACCTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTGTACTGCATAAGG
GCCATAAGGGCATAAGCGAAGTCAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTA
CCTTCATTCAACAGATTTGTGGTTGAGTCAATAACATGCTCTGGGTCGGGAATCTTTGCTCTTCT
CTTTTGCATTTCCGCTGCCTGCGTTCTTCTTCGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCC
AGCTGTAATGGTTGAAAATAGGGGGCCAACCAAGACCCTACCCTAATAAAGCTTTGTTCGATAAA
GCAAACGATTCGTTCCGACAACTTCGGACCAGATTAACCCTTTTGAATTAGCCGATCTTACAAAA
TGGATCGGGCGGGCTGGTTGGGAAGGGGTGATTTGCGGAGAAAAG
Found at i:327862 original size:13 final size:13
Alignment explanation
Indices: 327844--327869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
327834 CCCCGCCCTA
327844 TAGAATGAATAAG
1 TAGAATGAATAAG
327857 TAGAATGAATAAG
1 TAGAATGAATAAG
327870 GAGAGGCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (13 bp):
TAGAATGAATAAG
Left flanking sequence: Indices 327344 -- 327843
TGTCCAGCGGTGTTGTCCACCAGAACATCGATGTGCGGAAGAGAAAAAGAATCTTTTCGGCTTGC
CTTGTTTAGGGTCTTTTGACTCACGGAACCTGCTTTATGAGGGAAAAACCGTTCTCGAAAAGCGT
GACCATCCCGTTGAATCTCGTTACCCTCCCGTGTGGTTATGGGGGCGCGCCCGCTTTCCACTATT
ATGGAGCCGGGCCGCAAGCAAGTGAATGCGATCCCGCCCTCCATCAGCCGGTGTGTGTGAGCTTC
GCTCCTTATAGCTCTACACCGCCGCCGGCCACTTTAGCTCCTCTACCATATGATTCATTCTTTGG
AAGTTAGGCACGTGACTCGATAGCGCAGGCACAAGACCTTTGAATGCAAACAAAGAATGGCGAGA
CCGCATATAGTTTGGAACCCAAGCTTACCTTATTATTATTCAAAGGGGAAGGTTTGATAAAGGAG
CTTTTAAGCCCTTTTGCTGAATTGTTGGTCCGCAGCCCCGCCCTA
Right flanking sequence: Indices 327870 -- 328369
GAGAGGCCTGTTGATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCCCCTTGTCACT
TAAAGGGCGAAGTCGCTGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCTACTACGCAT
CCTTACTAATAGTATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTGAACCTGCGACCATTAGG
TTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCCCAAAATATATAGTAAAAAATAAGGAT
TGGTGCGGAAAAAAAAGGGGGCAGCCGCGGTCGAACTCTAATTCTGGAAAAAAGTCGGGGCCCCT
TTTCCAAGTCTACCAGATAGAAGATGATAGAGGGCCATATCGTTGCGTTGGACAAGACGGCGCCG
TCTCACTTCGAGTTCCTTCCTTCGTAGTAAAATCAGATGATACGCTTCGGCGATGTTACCTACCA
AATTTAAGGCCTGCTAGGTGATCGAAATTGCTCAGGTCAGTGAGG
Found at i:374629 original size:8 final size:8
Alignment explanation
Indices: 374616--374655 Score: 53
Period size: 8 Copynumber: 4.6 Consensus size: 8
374606 AAATAATAGA
374616 TATATAAT
1 TATATAAT
374624 TATATAAT
1 TATATAAT
374632 AGATATATAAT
1 ---TATATAAT
374643 TATATAAT
1 TATATAAT
374651 TATAT
1 TATAT
374656 CTATAAACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 21 0.72
11 8 0.28
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (8 bp):
TATATAAT
Left flanking sequence: Indices 374116 -- 374615
CAGCCTTAACCTGTCCCCAGACAGCCAGCCCTCACCAGGCTGCTGGAATTGCTAAATGCTCCGCC
ACGAAGCAAGCTCTCCCGATCCCGAAGACGACAGATGCGGAAGTGGCTAAAGAAGTCGGAGGAAG
AAAGTTGTTGGGCAATTGTATGCGCGAGGGTACATTATAAGTATTCTGAGAATTGGCAACATTGA
CAGAAAGGGGAAGAAAAGGGGGTAGGAATAAACTTTTTTAGGTGTAGCTATACTAAAGTAAGTAG
TCGGCCTAACCTTCGGTTCCCGTAACCAAGTTTTTCTTTCTCACTCCTTATGTTATGTACTTTTT
CTTACTTAATCCATACTTTTTTACCTTTTCTGAAGTGTGGGGCAAAGGGTGCCCTCTACTTATAC
TTCTAACTAAAGGCGAACTGCAGGCATTGCAAGCAAACAAAGCGCCCCCGCCCGTTTGAGTCGCG
AAGGGGCCGCTTGCTTAAAAAATTTATTTTATATAAAATAATAGA
Right flanking sequence: Indices 374656 -- 375155
CTATAAACTAAGAAAATCCGTTTTTTTTATCCAATTGTTCATTCCCGGGAAGAGGAAGAAGCAGA
TAGAGCAAAGGCCTCCTCTTTCCTTCCGTCCGCTCTTCCCGAAGTGGGCGAATTGCATGTAGAGA
TCCGCAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTTATATTGTAGGTTCG
AGCCCTACTAAGCCTACCACCCCCTTCTCTGCACCCGATACAAGGCAGTCGAAGTCCTCGCCACC
CTGCAGATCTCAATCTAGCGACGGCACCTGGAACCGCACAGCTTCCGCTGCCCTTCGGGCACGCC
TCCTACGCTCTTGCGGCATGCCCCCTTCGGGCAATACGGCTTTCGTGAGTAATACGCGAAGCAGC
TGAGCGATAGCTCTCTTCGATCGCTATATTCTTGCGATAGCGAAGGCGTAGTTCATCCTCTAAGA
GAGAGTAGATGCGAAGATTCGGATCGAAGATCTTCGCTTGGGCCG
Found at i:374632 original size:19 final size:19
Alignment explanation
Indices: 374608--374650 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
374598 TTTATATAAA
374608 ATAATAGATATATAATTAT
1 ATAATAGATATATAATTAT
374627 ATAATAGATATATAATTAT
1 ATAATAGATATATAATTAT
374646 ATAAT
1 ATAAT
374651 TATATCTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
ATAATAGATATATAATTAT
Left flanking sequence: Indices 374108 -- 374607
AGCAGGCCCAGCCTTAACCTGTCCCCAGACAGCCAGCCCTCACCAGGCTGCTGGAATTGCTAAAT
GCTCCGCCACGAAGCAAGCTCTCCCGATCCCGAAGACGACAGATGCGGAAGTGGCTAAAGAAGTC
GGAGGAAGAAAGTTGTTGGGCAATTGTATGCGCGAGGGTACATTATAAGTATTCTGAGAATTGGC
AACATTGACAGAAAGGGGAAGAAAAGGGGGTAGGAATAAACTTTTTTAGGTGTAGCTATACTAAA
GTAAGTAGTCGGCCTAACCTTCGGTTCCCGTAACCAAGTTTTTCTTTCTCACTCCTTATGTTATG
TACTTTTTCTTACTTAATCCATACTTTTTTACCTTTTCTGAAGTGTGGGGCAAAGGGTGCCCTCT
ACTTATACTTCTAACTAAAGGCGAACTGCAGGCATTGCAAGCAAACAAAGCGCCCCCGCCCGTTT
GAGTCGCGAAGGGGCCGCTTGCTTAAAAAATTTATTTTATATAAA
Right flanking sequence: Indices 374651 -- 375150
TATATCTATAAACTAAGAAAATCCGTTTTTTTTATCCAATTGTTCATTCCCGGGAAGAGGAAGAA
GCAGATAGAGCAAAGGCCTCCTCTTTCCTTCCGTCCGCTCTTCCCGAAGTGGGCGAATTGCATGT
AGAGATCCGCAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTTATATTGTAG
GTTCGAGCCCTACTAAGCCTACCACCCCCTTCTCTGCACCCGATACAAGGCAGTCGAAGTCCTCG
CCACCCTGCAGATCTCAATCTAGCGACGGCACCTGGAACCGCACAGCTTCCGCTGCCCTTCGGGC
ACGCCTCCTACGCTCTTGCGGCATGCCCCCTTCGGGCAATACGGCTTTCGTGAGTAATACGCGAA
GCAGCTGAGCGATAGCTCTCTTCGATCGCTATATTCTTGCGATAGCGAAGGCGTAGTTCATCCTC
TAAGAGAGAGTAGATGCGAAGATTCGGATCGAAGATCTTCGCTTG
Found at i:380746 original size:21 final size:21
Alignment explanation
Indices: 380721--380768 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
380711 AAGGTTGCGC
380721 ATCATTTGGATTGAAAGGGGG
1 ATCATTTGGATTGAAAGGGGG
380742 ATCATTTGGATTGAAAGGGGG
1 ATCATTTGGATTGAAAGGGGG
380763 ATCATT
1 ATCATT
380769 GATAGGTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.06, G:0.33, T:0.31
Consensus pattern (21 bp):
ATCATTTGGATTGAAAGGGGG
Left flanking sequence: Indices 380221 -- 380720
ACGGCGGAGAGATTCCCGTTTTGCTGGGCATCTTGGATCCAGTACCGCAGCATAGCTTCCACCAA
TCCCTTATCAAAAGGGGACTGGGGGTCAGTCAGATTTAAACGACTCATAAAGTCGTTGATGAATG
AAAGAGCTTCGCTCCTTATGGCACCCTCTCGAAAGGGCGAGTCTGCCAATATTTGAGTGAGCCGC
TCAGTTGTTTCGCTCATTAACAAATTAACGAGTTGCTCTAAGAGATTCGCCTTAAACTCTAACAG
GCGAAGATCGAAGAGCTCATTGCTCAGGACATCACGGTAGTGTCCAATGGTCAGGGTGTCATCGA
GAAACCCTCTGACTAAGGCTTCGTACTCGCCAAAGTTCATTTGCGGTGGCAAGCCGTCAATCAAA
CGGTTCTCGAGAAGTCGTATCCGAGCAAAGAGTTCCAATTCCGTCTCTTGGTTGAGTATACGAAA
TTGATCGACAACGTCGAGAGGTATTGGATTATTTAAAGGTTGCGC
Right flanking sequence: Indices 380769 -- 381268
GATAGGTATATTATGAATAGAATTGGAATCTGCGATGGAGCCAGAGTTCACGGCCAAAGAGTCCG
AAAAAAAATGCATCAGATCGATGTCACCAAAAGGTGCGTTTACCAAAAGCCAATTCCACAAAAGA
AAATAAAAGTAAGCGAACCCAAGCCTAACGAGTGGTCTACCTAAGAGGAACACGATCATAGAAAA
CATTTCGGATAAGATTCACTTGTAGTTCCGCTTCTTGCTATAACAGAAAGACTTGTCGGAAATCT
GGTTGGTCCAACCAAGAAAGGCACGGGAGTCTTTGGGCATCTCACAGTAATGCAACCATCAAATC
TTAATAAGATGTTGACCCGTTTTTCTTTTCTTTGCTGATTCCTCTCAATGAAATTTGCCGTGTTG
CACTAAGTTACTTACGGATGTATGCATGCAATCCGGGAACACTTTGGGGTGAACACCCATCCGAA
CAAGTAGGGTCAATAGTTCAGCATTTAGGCCGTAACATTTAGCAA
Found at i:401995 original size:21 final size:20
Alignment explanation
Indices: 401966--402007 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
401956 CAAAGATTGC
*
401966 CCACTTCACTTCGCTTCACTT
1 CCACCTCACTTCG-TTCACTT
*
401987 CCACCTCACTTCGTTTACTT
1 CCACCTCACTTCGTTCACTT
402007 C
1 C
402008 GTAACCTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.14, C:0.43, G:0.05, T:0.38
Consensus pattern (20 bp):
CCACCTCACTTCGTTCACTT
Left flanking sequence: Indices 401466 -- 401965
CAGCCTCGTGAATACAACCGTTAGGCTGCGAAGCAGATCTTGTGCAATCAATAAAAAAAAAAGAA
TGAAGGAGCGGAACCTTCCTCTGACTCACTTCGGTGGCAGGAGATTCCGGAATTACTACGCAAGA
TAAGGGGACTCTGTCAAAGAGGCACACTCATCTCGATGGCTTGACGGAACACGGCCGCACACCCC
TTTGTTGTCAACGCGACTGAAACGAAAGAGTGGCGCCTCGGCCACTGCTTTGTATTGAAAGTGGT
GCTCCTCGTCATGCTTGCCGTGGGAGGGGATGATTACAAACCATCCCTCTTGCCAGTCCCCGTCT
CCCTGACTCGTCCGGGGATCCCTCGTATCATTCCGTCATTTCACAGATGTAGGGTCCGTAAGGGC
GACGAAAGGTAGGATGCCCCTGTTTGGCTTTTGTTTTCCAAACAGGGTTTGCCGCTAAGCCAACC
CTCCATATCTGGACGCTGGTTCAAGTCAACAGTGGCAAAGATTGC
Right flanking sequence: Indices 402008 -- 402507
GTAACCTCATGTTTACACAAAATGTTGTTGTTAAGGAATTCCCACTATGGTCTCGAGAGAACAAT
CCTAACCCAAAGCTTGGAAAACAGTTCATAATCCTGCCTTCGATCTCCGCAAGCGGAGGGTTTCG
CACTCAACCAGCGGGAGATTGCTCGACCATACCATTAGGGAGAGGGGATTGAGACGATCTTGAGC
GTCAGGCGAAGCCGAGACACATCCATACTAGAAGCCATTCGAACTTCCAGCAAAAGGACTCGGGG
GTGACCTAACCGAGTCCATCTTGTTCCCCCGTACCATCCCAATGTGATTAAGATCAATCCGAAGC
CCAGACGTTTCGAGCTCTGTCTCGATCAGATGCATCAGAGGCGCCAAAGGCGTGAGGGGAGGCTT
GAAAAACTGCCGGAATGGTCCTACGGGTATCTTTTCCCATCGGAGGTAGTGCCCAACGGGAGAAG
GGGCCGAAATGGGGTTTCTATTACCAGAAAGCGTCCATTCAGATG
Found at i:414398 original size:30 final size:30
Alignment explanation
Indices: 414362--414473 Score: 118
Period size: 30 Copynumber: 3.5 Consensus size: 30
414352 GACTCAAGCG
*
414362 ATTTTAATAGCTTTTCCTTTTCTACTTGTA
1 ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
*
414392 ATTTTAATAGCTTTTCCTTTTCGAGTTGTA
1 ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
**
414422 ATTCTATTTCTA-CTTTTAATTCCTTTTCTAGTTGTA
1 A-T-T-TTAATAGC--TT--TTCCTTTTCTAGTTGTA
414458 ATTTTAATAGCTTTTC
1 ATTTTAATAGCTTTTC
414474 TAGTTTTAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
30 32 0.48
31 1 0.01
32 4 0.06
33 8 0.12
34 4 0.06
35 1 0.01
36 17 0.25
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (30 bp):
ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
Left flanking sequence: Indices 413862 -- 414361
GCGGGATTGGATTTTTTTTATAGTGGAAATGCCATAAAGCGCGAACCAAGATCCGTGATACGAAA
ACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCATTATTCCTTGCATCATAGG
TGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATTGTGAGGA
ATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCCCAAAAAA
AAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGGCTTTTCC
AACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTATTTATTA
TTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAGATGCTAC
TTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCG
Right flanking sequence: Indices 414474 -- 414973
TAGTTTTAATAGCTTTTCCTTTTCTAGTAGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTT
GTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTGATTCCCTCCAGAA
AAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTT
GACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCTTACGATATAAATA
AGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGA
AAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAGAGATGCGAATCAT
AGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGG
CAAGGAAAGGCTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGG
Found at i:414440 original size:42 final size:43
Alignment explanation
Indices: 414393--414497 Score: 101
Period size: 42 Copynumber: 2.5 Consensus size: 43
414383 CTACTTGTAA
* *
414393 TTTTAATAGCTTTTCCTTTTCG-AGTTGTAAT-TCTATTTCTAC
1 TTTTAATAGCTTTTCCTTTTCGTAATTGTAATAGCT-TTTCTAC
** * * *
414435 TTTTAATTCCTTTT-CTAGTT-GTAATTTTAATAGCTTTTCTAG
1 TTTTAATAGCTTTTCCT-TTTCGTAATTGTAATAGCTTTTCTAC
414477 TTTTAATAGCTTTTCCTTTTC
1 TTTTAATAGCTTTTCCTTTTC
414498 TAGTAGCTTT
Statistics
Matches: 48, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
41 3 0.06
42 41 0.85
43 4 0.08
ACGTcount: A:0.19, C:0.15, G:0.09, T:0.57
Consensus pattern (43 bp):
TTTTAATAGCTTTTCCTTTTCGTAATTGTAATAGCTTTTCTAC
Left flanking sequence: Indices 413893 -- 414392
CCATAAAGCGCGAACCAAGATCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATAT
CGTGATGTAAGTCCATTATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCAT
GGTTCCGCTGCATCACAAGGAACAATTGTGAGGAATAGCCATTCTAGAACAATCATTTGGGTTGG
TTCATTCTTTAACTGCTCCGCCCCCCCCAAAAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAAT
TCAGGAAGACGGAAGTCGCCGGTTGGGCTTTTCCAACCAAGAAAAACATGGGACTTTTGGGCATT
TTCTTCTCTTACGCTACGCAATTTCTATTTATTATTTTTGAATAGAAATCTAACTTTATATTAGA
TATTTGGAAGGGATATTTCTATTCGAGATGCTACTTACTTACATATGATGTTTTCTTTCACAAGG
CAGCGACTCAAGCGATTTTAATAGCTTTTCCTTTTCTACTTGTAA
Right flanking sequence: Indices 414498 -- 414997
TAGTAGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGG
TCATAAAATTGGGATTTACGTCATTTTGATTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTG
TACGAGTAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCT
TTGGGCATAGGAGGTTCTCTCTCTCTCTTACGATATAAATAAGTCCGGGAATGAGCTATCATATG
CCTTCTGTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGAC
ATAGATTGTATTATAAAAGTTTAATGAGAGATGCGAATCATAGCGTATCCAAAGTAGTACTTCTG
TTTTGTTTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAG
GGCGAACTTAACCGGGCATGGAAGGCAACTCTATCAAGTAAAGCT
Found at i:414449 original size:18 final size:18
Alignment explanation
Indices: 414405--414460 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
414395 TTAATAGCTT
* *
414405 TTCCTTTTCGAGTTGTAA
1 TTCCTTTTCTACTTGTAA
*
414423 TT-CTATTTCTACTTTTAA
1 TTCCT-TTTCTACTTGTAA
*
414441 TTCCTTTTCTAGTTGTAA
1 TTCCTTTTCTACTTGTAA
414459 TT
1 TT
414461 TTAATAGCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 2 0.06
18 27 0.87
19 2 0.06
ACGTcount: A:0.18, C:0.16, G:0.09, T:0.57
Consensus pattern (18 bp):
TTCCTTTTCTACTTGTAA
Left flanking sequence: Indices 413905 -- 414404
AACCAAGATCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGT
CCATTATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCA
TCACAAGGAACAATTGTGAGGAATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAA
CTGCTCCGCCCCCCCCAAAAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGG
AAGTCGCCGGTTGGGCTTTTCCAACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTAC
GCTACGCAATTTCTATTTATTATTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGG
ATATTTCTATTCGAGATGCTACTTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAG
CGATTTTAATAGCTTTTCCTTTTCTACTTGTAATTTTAATAGCTT
Right flanking sequence: Indices 414461 -- 414960
TTAATAGCTTTTCTAGTTTTAATAGCTTTTCCTTTTCTAGTAGCTTTTCCTTTTCGAGTTGTAAT
TCTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTG
ATTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTT
GTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCT
TACGATATAAATAAGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTT
TACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAG
AGATGCGAATCATAGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTA
CTGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAGGGCGAACT
Found at i:414450 original size:24 final size:24
Alignment explanation
Indices: 414423--414483 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
414413 CGAGTTGTAA
* * *
414423 TTCTATTTCTACTTTTAATTCCTT
1 TTCTAGTTCTAATTTTAATACCTT
* *
414447 TTCTAGTTGTAATTTTAATAGCTT
1 TTCTAGTTCTAATTTTAATACCTT
*
414471 TTCTAGTTTTAAT
1 TTCTAGTTCTAAT
414484 AGCTTTTCCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.07, T:0.59
Consensus pattern (24 bp):
TTCTAGTTCTAATTTTAATACCTT
Left flanking sequence: Indices 413923 -- 414422
GAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCATTATTCCTTGCATCA
TAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATTGTG
AGGAATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCCCAA
AAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGGCTT
TTCCAACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTATTT
ATTATTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAGATG
CTACTTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCGATTTTAATAGCTTTTC
CTTTTCTACTTGTAATTTTAATAGCTTTTCCTTTTCGAGTTGTAA
Right flanking sequence: Indices 414484 -- 414983
AGCTTTTCCTTTTCTAGTAGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTTGTAATAGCAA
AATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTGATTCCCTCCAGAAAAGCAAGTTT
TTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTTGACCAACGGA
AAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCTTACGATATAAATAAGTCCGGGAA
TGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGAAAGCTAAAAC
TAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAGAGATGCGAATCATAGCGTATCCA
AAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGGCAAGGAAAGG
CTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGGAAGGCAACTC
Found at i:431201 original size:17 final size:17
Alignment explanation
Indices: 431179--431213 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
431169 ATCATCTCTT
431179 TCAAGAAGCCAACTCAA
1 TCAAGAAGCCAACTCAA
431196 TCAAGAAGCCAACTCAA
1 TCAAGAAGCCAACTCAA
431213 T
1 T
431214 AGCTTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.29, G:0.11, T:0.14
Consensus pattern (17 bp):
TCAAGAAGCCAACTCAA
Left flanking sequence: Indices 430679 -- 431178
TGCGCTCTCACTAGACTTTTTATTTTATGTCTACGCCGCCTCGATTCACTCAGATTTAATGGTTT
GGTAACCTGCAACATCTTTGGTTCGGCTAGCTTTCATTTTTTTGATCGAAGTCGGTTGTCTTATT
AATCGATTGGAACTCGTAGCTCCAACTATGTATTCCCACTGCCCTGACATGGACAACTTCGCTTT
TACCTAGGTTTATTCACGAAGCATAGGGCATACTTTCTATATAATTTATGCTTTCGTCCAGCCGG
AATCTTAACTGGACGTCTATTGAAAAGGACGGTAAATTGAGAAAAAAAGCATTTCATTAAAAAAA
AGAGTGGATTCTTGAGGTTACATTCCGCTATAGTAGCTTGACCAACGTGAAAGTGGAACAAGTGC
ATGCCCCATACACGAAATTGAATATTAGAGTATAAATCTCATATCGGTATGAGGCTTCCAGTCGA
ATATCTGACTCCGCCTATCACTTTATTCTGCTTCCATCATCTCTT
Right flanking sequence: Indices 431214 -- 431713
AGCTTCTTTTAGAACCGCTATGCCCTCTGCTGCAACTGAGCTAGTTATTGGGAACAGATGGGGAC
TACAAGCGAAGCTTCGCTTGCTTATACCACGTAATTCAACCTCAACAGGAAGGCAAATGGTAAGA
TCCGGGTAAGAGGTTTCGCAGATCTGCTTATTACTGTACCAAACAACAAGACGAAAGCGTCAAAG
GCGAAGCCATGGCGTCACACAATTATCATACAAAATTCTCATTAAGCCACTGTGAGAGAAGGTTG
CTGATCGACGATAATAGGTAGCTTGCAACTATAACATAAAGTGGACGAGCTGACTCAGTGGAGCC
TAAAAATAGCACAAGGTAGTACTAGAAATGATATACAGATGAGATCAAAGGATGGATACACGCAC
GGAGGGAACCAGAACCGGGATAAGCCGCCCTTATTGGGCGCGGTAGAAGCTTACTCTGTAGTTGG
TCTGAAGGAGGTGTTCCACTTCTCACCATCGATTATGATTCGTAT
Found at i:459889 original size:2 final size:2
Alignment explanation
Indices: 459878--459913 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
459868 ACCGGTATCG
459878 TA TA -A TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
459914 AAAGTCGCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 459378 -- 459877
TGCCTCTATCATCTACGTCAATTTCTTCTTCAATAGATTCCCTCACTTCTGGCCCGAGAGAAAGT
AGGCCAAAAACGTGGGATGTAAAAAAAGGTGTATTCTAGGGCCAGGTGATGTCAGGTATACAGGA
TGAGTCTCACAGTCCCCACAGCCTCCACGCGAGAACGCATCCCCTTTTCCGTGATGATGCTTTGT
TAATCCTTTACTGGAAGTCTGCTTTTAAGAAAACCCTGCATAGAATAGGTCACATAAAGTGAAGG
CTGGTACCCGAATCAATCCACCATGCATAAGTAGATAAGTAAAAAAAAAGCAACTTTTCAGAAAC
AAGGGCATAGTGATTGCCTTCCTTCACTCCTTAAAAAACCGAAGCTTTGAACTAAATATCGTACA
ATCCTTTTTTATAGTTGCAAAGCATAGCGAGAGAAAAAGAACAAGAAAGTTGACCGTGACGGTCG
TAGCTCTATCAAGTAGGTACGCTAAACACTCATAGACCGGTATCG
Right flanking sequence: Indices 459914 -- 460413
AAAGTCGCGGTGGAATCCATTGCGATCTTGGGCATCGCCAAAGAAGGGTGTTCTCAGCGCCTATG
CTTAACACGGCTCCCATGATAGTAGCAGAAAACGAGTTGTGCTGGTGATGTGATCGGACCATTTC
CCCCCGGGAAATACGGTCACAAGTTCATACTTTCTTTTTTACTAGTAATTTTTTACTCTAGTAAG
TCAAGATCAGAGCAGGCACAACGACGCAATTCTCAGGGGCGTGTCTGGTGCTATCGTATATAAGA
GAAAGGTTGGGTTGCATTTAGGAAGGATCTTTCTCTTTAACTAGAAATATCTTAAGATAAGAAAG
CGTAAAAAAGAAAGGTTTTGATTCGACCTGATTAAACAAAGAAAAAAAAGCTTTCTCCGCGTCAG
GCTGTTGATGTAGTTGCTTGTACTTTTCATTTTATGTCGAGATTTAGTTGGTGTTCAGTGTACCT
GTTGAAGACCTTAACGTAAGGAACTTTTTGCAAAAGTGGCGGAGA
Found at i:459900 original size:17 final size:17
Alignment explanation
Indices: 459878--459913 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
459868 ACCGGTATCG
459878 TATAATATATATATATA
1 TATAATATATATATATA
459895 TATAATATATATATATA
1 TATAATATATATATATA
459912 TA
1 TA
459914 AAAGTCGCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATAATATATATATATA
Left flanking sequence: Indices 459378 -- 459877
TGCCTCTATCATCTACGTCAATTTCTTCTTCAATAGATTCCCTCACTTCTGGCCCGAGAGAAAGT
AGGCCAAAAACGTGGGATGTAAAAAAAGGTGTATTCTAGGGCCAGGTGATGTCAGGTATACAGGA
TGAGTCTCACAGTCCCCACAGCCTCCACGCGAGAACGCATCCCCTTTTCCGTGATGATGCTTTGT
TAATCCTTTACTGGAAGTCTGCTTTTAAGAAAACCCTGCATAGAATAGGTCACATAAAGTGAAGG
CTGGTACCCGAATCAATCCACCATGCATAAGTAGATAAGTAAAAAAAAAGCAACTTTTCAGAAAC
AAGGGCATAGTGATTGCCTTCCTTCACTCCTTAAAAAACCGAAGCTTTGAACTAAATATCGTACA
ATCCTTTTTTATAGTTGCAAAGCATAGCGAGAGAAAAAGAACAAGAAAGTTGACCGTGACGGTCG
TAGCTCTATCAAGTAGGTACGCTAAACACTCATAGACCGGTATCG
Right flanking sequence: Indices 459914 -- 460413
AAAGTCGCGGTGGAATCCATTGCGATCTTGGGCATCGCCAAAGAAGGGTGTTCTCAGCGCCTATG
CTTAACACGGCTCCCATGATAGTAGCAGAAAACGAGTTGTGCTGGTGATGTGATCGGACCATTTC
CCCCCGGGAAATACGGTCACAAGTTCATACTTTCTTTTTTACTAGTAATTTTTTACTCTAGTAAG
TCAAGATCAGAGCAGGCACAACGACGCAATTCTCAGGGGCGTGTCTGGTGCTATCGTATATAAGA
GAAAGGTTGGGTTGCATTTAGGAAGGATCTTTCTCTTTAACTAGAAATATCTTAAGATAAGAAAG
CGTAAAAAAGAAAGGTTTTGATTCGACCTGATTAAACAAAGAAAAAAAAGCTTTCTCCGCGTCAG
GCTGTTGATGTAGTTGCTTGTACTTTTCATTTTATGTCGAGATTTAGTTGGTGTTCAGTGTACCT
GTTGAAGACCTTAACGTAAGGAACTTTTTGCAAAAGTGGCGGAGA
Found at i:459902 original size:15 final size:15
Alignment explanation
Indices: 459884--459914 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
459874 ATCGTATAAT
459884 ATATATATATATATA
1 ATATATATATATATA
459899 ATATATATATATATA
1 ATATATATATATATA
459914 A
1 A
459915 AAGTCGCGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATATATATATATA
Left flanking sequence: Indices 459384 -- 459883
TATCATCTACGTCAATTTCTTCTTCAATAGATTCCCTCACTTCTGGCCCGAGAGAAAGTAGGCCA
AAAACGTGGGATGTAAAAAAAGGTGTATTCTAGGGCCAGGTGATGTCAGGTATACAGGATGAGTC
TCACAGTCCCCACAGCCTCCACGCGAGAACGCATCCCCTTTTCCGTGATGATGCTTTGTTAATCC
TTTACTGGAAGTCTGCTTTTAAGAAAACCCTGCATAGAATAGGTCACATAAAGTGAAGGCTGGTA
CCCGAATCAATCCACCATGCATAAGTAGATAAGTAAAAAAAAAGCAACTTTTCAGAAACAAGGGC
ATAGTGATTGCCTTCCTTCACTCCTTAAAAAACCGAAGCTTTGAACTAAATATCGTACAATCCTT
TTTTATAGTTGCAAAGCATAGCGAGAGAAAAAGAACAAGAAAGTTGACCGTGACGGTCGTAGCTC
TATCAAGTAGGTACGCTAAACACTCATAGACCGGTATCGTATAAT
Right flanking sequence: Indices 459915 -- 460414
AAGTCGCGGTGGAATCCATTGCGATCTTGGGCATCGCCAAAGAAGGGTGTTCTCAGCGCCTATGC
TTAACACGGCTCCCATGATAGTAGCAGAAAACGAGTTGTGCTGGTGATGTGATCGGACCATTTCC
CCCCGGGAAATACGGTCACAAGTTCATACTTTCTTTTTTACTAGTAATTTTTTACTCTAGTAAGT
CAAGATCAGAGCAGGCACAACGACGCAATTCTCAGGGGCGTGTCTGGTGCTATCGTATATAAGAG
AAAGGTTGGGTTGCATTTAGGAAGGATCTTTCTCTTTAACTAGAAATATCTTAAGATAAGAAAGC
GTAAAAAAGAAAGGTTTTGATTCGACCTGATTAAACAAAGAAAAAAAAGCTTTCTCCGCGTCAGG
CTGTTGATGTAGTTGCTTGTACTTTTCATTTTATGTCGAGATTTAGTTGGTGTTCAGTGTACCTG
TTGAAGACCTTAACGTAAGGAACTTTTTGCAAAAGTGGCGGAGAT
Done.