Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_058734
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 711422
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:69824 original size:22 final size:22
Alignment explanation
Indices: 69785--69827 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
69775 CTTCATCCGA
*
69785 ATAAGGAAGAGACAGGTACAAT
1 ATAAGGAAGAAACAGGTACAAT
* *
69807 ATAAGGAATAAACTGGTACAA
1 ATAAGGAAGAAACAGGTACAA
69828 GGAGTCCAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.09, G:0.23, T:0.16
Consensus pattern (22 bp):
ATAAGGAAGAAACAGGTACAAT
Left flanking sequence: Indices 69285 -- 69784
GAGAACATGGAACCCCGATCCGGCACCCGGCCGACCCGGATACCTTGAGAAGAAACCACTTGGCT
TGGAATACTAAGAAAGGGGGGACTAAAACAGCAGATGAAGGAACAGAAAAAGAGCTCCTTGCCAT
AGGACGTATTCCCGAAAACCCCTATACTAGAGTTAGGAGCAGCAAAAAAAGAAGAAAAGGGCAAC
AGCAGAAAGAGCTGCAACAACCACCTCGATAACAACCTTCGGAAAAAGAAGGAAGACTATTACGA
ACTCATACGCCTTGAGACAGAGGGGGAATCAACTAAACGGGGCTTAGCTGAAAGCTTCCTTGTTG
GATTCGTTACCGGCTTACTCTTCTATTCGTTACGGACTTACTCGCTTAGCTAACAGCTCTTGGCT
CAGAAAGAATAGCTCCTAGGGCGAAAAAAAAATTTAGAAATTACCCGCTCAATCAGATAGGACGA
CCTACTCCTTAGTTGAACCGGACTTTGCCACTCACCTTCATCCGA
Right flanking sequence: Indices 69828 -- 70327
GGAGTCCAGCTGAACCACCCAGATCCGCTTCTTTCATCAAGCAACACAGCCTAGTCTAACCCGAG
CCCGAGTTCGTATTGGTAAATTTCGGGTCAGCAGGCAAAGGAAAGGGAGCACCCACGTTCTACTT
GCATATAGAAGTCGATCGGCCATTCATATCACTATGGTTAGCTCCGACTCCTTCTTCACTTTACC
CCTTATACGAGGCTTTTTTTTTTGAAACCTATTCTCGACCCTCCTTCCTACCCCACCCACCGCTC
TTCCTTTGAGGCAAAAGTCTCTCTTATTCGACCAGAAGAGCCTTCTTCTTCATTTCACCTATGGA
CTTTTTCCACGTAGCAACTTCCATACTGCACGAAGTCTTCTTCGGGAATGGCTTACCGCTCCGTG
GGAATTGGATTTAGTCCCGCGCGCTCCTGAAATGGGGGCTCTTTCCTCGGTGCGAAGGATCAAAC
CCTACGCCCACTGCCCTTGTTCCAAGATCTCACTTCATTCACGTA
Found at i:83435 original size:34 final size:34
Alignment explanation
Indices: 83392--83461 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
83382 AGCTCTTGGA
83392 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
1 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
83426 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
1 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
83460 AG
1 AG
83462 AGTCTTTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.31
Consensus pattern (34 bp):
AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
Left flanking sequence: Indices 82892 -- 83391
TTTCATAGTAGCTCGGTTCTTAGGTGGCTTCCTATCCTATTAGCTCTTAGCTCGTAGCTCTCTTC
TTGTAGCTAGGTAGCTAGTGGTTAGGTTGTTATAGACGATATGACGATAGTCTTAGTCTTGTTTA
TCGTCTTCCCTTATGAGTGGAATACCTCTTTTTTAATCTGCGTGTGCCGGATCTCATAAATAACT
TACGCTATTTCCCGGTCATCCTTACCCCTTTCACAGCCGTAGAGAAAGGGGTTTCTTTTGTTTGG
AAATCCAGTTTTCGATTGTGAGCGGTTTGTGGTAAATATAGAGTTTACACATTAAGAACAGAACT
AGGTCGTCTGAGCTCGTTCCTCAAGCCATACATGGCTGAATAAATCACCCACAGTGGTCTGAAAC
ATACTTTGAACTGAGTTTTTATACTCTTTTGGGCGACCCACTCCTGTTCTAGTCGAACCAGTCGT
CTTTTTGTTCGTATCCGGGGCCTTTAAGAGCCAGCAGCTCTTGGA
Right flanking sequence: Indices 83462 -- 83961
AGTCTTTTTCTTCGTAATCTGGATGAGTGCGCGTCCTTTGTCTGCTGAAAGCCGGGTTGATATTG
ACGGCTGGAGAACTCTTCGTATCGTACAGAGGTTCCCGAAGACCCCTCACTCAATCGCCGGCTTG
ACCTTTCATTAGGATAGTGAGAGAGAGCAGGAAAGCAAGTAGCAGTCTAGGCTTTCTTTCCGGCT
AGTGCTTTCGATCTAGTATAGTAGGGTTATGCTCTTCGGGTGTCTTATCGGGTTTCCCCAGTACT
TACGGTTAGTTTTGGCTCCAGAATCCATTACATATAGTGAGTGTCTGGGGTGTTATCGGATTGGG
CAGATTGCCCAGTTGGTAATGTTATTTCGGTCACTGAAAATGAAATCAGTCAACATGGGGCCTAC
TCTGATTCGATCATTGCTCTTGTTGGTTTTGCTCCCGACTAACCTTTTCACATTATTGGTGTACC
CAATAGATGGGTCCCCCTCCAGTGCCTAGCGCGCCTCTGAGCCTT
Found at i:109969 original size:25 final size:25
Alignment explanation
Indices: 109924--109971 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
109914 GAAGCGAGAC
*
109924 TCGACTGTTAAGGACCCAGAGGGGA
1 TCGACTGTTAAGGACACAGAGGGGA
* *
109949 TCGACTGTTAAGGAGAGAGAGGG
1 TCGACTGTTAAGGACACAGAGGG
109972 AAGCACAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.40, T:0.17
Consensus pattern (25 bp):
TCGACTGTTAAGGACACAGAGGGGA
Left flanking sequence: Indices 109424 -- 109923
CGCATTCGCTGCATCTGAAGGGACGATTTCAGATAGGTAGGTTGGGTTGCTCGTTGTGGTTGCCC
GGACCTCGATCTAGATCCAAGATAAACCAAAAGCATGGGTCGTGGTCGGCAGATATATATGATTC
TGCCGGGGCTTGGGCTTGACTTCTTTCTTCATGAATGATTTTGGAGAAGCCTGCCTCGAGAGAGA
CATATGGCATATCTGACTGCCTGATTGGCGAGCAGCTGTCCTCATTCATAAGTCCAAAGAACTAG
CAACCAAACTGGTCGCAAGCAGGAGAGTGACCAGGCCTGATACTGATTGAAACGTTTATTTAATT
GGAAGCCGTTCAGATAGCCCTAATTAGTTTTAATTAGTTTAGTCAATGTTGAGCTGTCATATCTA
GCTGCCATATATGTAAACATGCCCTAAAAGTAAAGGGATCATATTTCCTTTAGTAACCACTTTTA
CCCATCCGCTCTTCTCCTGACCGATTGGAGGAAGAGAAGCGAGAC
Right flanking sequence: Indices 109972 -- 110471
AAGCACAAGGTTGGTGACCCGGGGGAAAGCGAATGCAGATCTCACGCAAAGTGAAATCTCAAGAT
TCAGATTGGGTTTGTGTTCGGTGTGGAGTAGATAGGGCTATTCCTTAGCAAGGCTATTCAGTAAA
GGCGAGAAGGGATCTATAGCAAGGGCAGCCCGGGTCTACCCAAAGAAAGGCAGAGTTGAGGAAGA
TAGATCAAACAGCCTTAGCGCTTTAGCTTGAACTGTAACCTTACCCTCGCTACTGACCTGTCGCT
TGGCCCGAAAGACTGGAACTAGAAGTTCCTAGAAGTCAACTGTGCCTAGACCTCAATCAATACGC
TTACTGAGAGTACCGGTACAAGAACAAGAACAAGGATTTCTCTTTGGTCAAAGCCGCCGCACTTG
AACCGTAACCAGCTAATGCATCGCCTTCTATCTGCATTTCTAAGACCTTCTGCTAACCAATTAGG
TTGGTTCATCAGGTGCCAAGGCATCTCTTTCTCCCAGGTCCCATC
Found at i:111853 original size:22 final size:22
Alignment explanation
Indices: 111827--111871 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
111817 TAGTGGAGCC
111827 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
111849 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
111871 T
1 T
111872 GAGTTTCGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (22 bp):
TTCGTGTACCAATTTCAGTGGT
Left flanking sequence: Indices 111327 -- 111826
TCCGTTGGGACGGGAACATGTATCCCTCCCAACCAAAAATCTTTTTGTCTAAATCAGCTTTCGGC
CTATCGATTTAACCGGGAGCTGCTGTTGAGCACTCTTTCCATCACCGGATTCCCTATGCGCTGAT
TGATGCTTCCTCTCCGACTCGATGAGACCACACTACTGAGTGAGCTTCTTTCTGGCGCTCTTCCT
AGGATTCCTAATGCCTCTTGCTTCAACACAGAATAAGGTCTTTTCTCGGCCACTTTGTCATGAAA
TGAAAGCACAGTGAGTGAGTCTTCTTTCCGAGTCGAGTACTAGGCAGTCAATGTAGAGTTCACTT
CATTTGTCAGACTCCCGGTACCGAAGCAAAGTACTCATCCGAAAAGACGGTTTGATCATGCCCTT
TGTCCTCAACCCATGGTTCTCCTATATCTCCTAACTTTCGCTTTGCTTTCTCTTGAGCCCGCATT
TCGTGTTTTTTAAGATATTAAGAGGTGAACCCACATAGTGGAGCC
Right flanking sequence: Indices 111872 -- 112371
GAGTTTCGCACTCCCGTCATCTTCCTCTTCTTTTTGGAAAATCCCAAATAGTCATCAGAAACAAG
CTAGCCGAGCATTGATTTGGGTGTGGGTGGGGTATGGTGCCCCAACGGATGGATCTCCATCAACA
TGGGATTTTTCCGAGGGGATCAATGTCTGGTCGAACCAAGCTTCCTTCTCTCTCTCTTGCTTCCC
CACCTGTGACTGAAGCTTCCACATGAACTTGACTTTCCTATCTGAGTAGACCGAAAGTTCTACTT
TTTGGGAGGGACATTAAAAAGGTAGCTTTCTCCCTGGTCGATCAGTCGTTCAATCCTTTCCTCTT
GATCAAATGCATTTCTAAAAGATTCTCACAACACAATGGACTCCAATACTGAACTGAGACGGACC
CAGACCCCCTACCGAAAGGGCTCTGTACCTATATGTTCTTTATCTCAAGCGATAGCTTTCAAGTG
CCCGACCCTCTTCCCTTGATCAATGAGTGAGAAAGCAATAGCCAG
Found at i:115790 original size:20 final size:20
Alignment explanation
Indices: 115765--115805 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
115755 GCTTCCACTC
115765 CTATAAAGAAGATAGTTAGA
1 CTATAAAGAAGATAGTTAGA
115785 CTATAAAGAAGATAGTTAGA
1 CTATAAAGAAGATAGTTAGA
115805 C
1 C
115806 CAAGTTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.07, G:0.20, T:0.24
Consensus pattern (20 bp):
CTATAAAGAAGATAGTTAGA
Left flanking sequence: Indices 115265 -- 115764
CATTTGATAGAGTTTCATCCAAGGCAGCCCCTTCTTTTTAAAGCAAATCGTCTGCTCTCTCTTGG
GGAGAGGAATTCCTTGATGCATCGAATGCTGCTATTAAATGCGCTGTTGTTTCTGAGTGAATAAC
CGGTCTTGTCGTATCCGCTGTGAGCCTATCTGCTGCTGTAAGAAAGCTAACTTCATGCGTAAAAG
CTGGCCGTTCACAAAGCTATAAAATCTTCATTCCGGGTTAGGGGAAAGGCGATTCAGGGATTTCC
TATTGCGAAACTCTTTTACCATATATTGAATTACTACGGGTATAAAAAAAGAAGAAAGAACTATG
ACACGTAGACGGGGCGAAATCTCCCTACGATTACGTTCCTATAGAAAGGGGGTGCTATGGAAAAG
AGGAATCTCAGGTACTTTTAACTTTATGCCCATCTTGCTTCTGGTAATGCAAATGGAAATTCTCA
TTAGGATGCATCTGACTTCAACCCCAAATCTTTTCGCTTCCACTC
Right flanking sequence: Indices 115806 -- 116305
CAAGTTCACTAACATTTCCTTCTAGGCTCTAGCCTCAAGCTAATCTCATTAGGCTCCACATTCCA
ATCTTCACACTCGCATTAAATCGTAAGACTCTCATCAGAAGACAGTCAAACCTAGGATTCAAAAT
CTTTGCTTCCAGTGGCATGAAGTGAGATTGATTCTAATGAATCATAAATTGCAATCTTAATCCTG
ATGATAGAAATCCTCTTGCATTTTTTCACCTTCTTCCACCATACTTTCAATTCTATCTGATCGGG
TATTCTTGATTGGTGCTAAGCTGACTGAAATAGTTTTTCTTTAAGTTTAGTTTAGTCGAAAGTCA
CATGTGGGGGTTGTACACAAAAGTTTAAGTGGCACATCACACTCACATGACCACTTTAATGACTT
GCCTTTTCTTTGCTTAGGATGGTGACACTTGTCAAAGGACTAATGGCTGGTGCTTTTTCTAGCCT
TGGAACTTGCTCTCTTTGCTTTGCTGCCTGCTCTTTAGGCTTTTC
Found at i:122979 original size:17 final size:19
Alignment explanation
Indices: 122943--122980 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
122933 ATTTCTTTTT
*
122943 TTATAATTATATTAATTTG
1 TTATAACTATATTAATTTG
122962 TTATAACTA-ATT-ATTTG
1 TTATAACTATATTAATTTG
122979 TT
1 TT
122981 GTCTCCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
19 8 0.44
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATAACTATATTAATTTG
Left flanking sequence: Indices 122443 -- 122942
ACGTTTTCGTGTTTGAAATTCCAGGTCTGGTCTTCATTGGTATTTGCTTTTTGCTCACTCACTAC
GTTTTTTTTTATTTTTAGTTCTTCCCCCGCACGGGCGAGCTGTCTGAGGTCGATGGTGCATCCGG
TAAGCTCTATCGGTATTCATCTCCAGAGCCCGGTCAGAGCTGACTTTCACGAATAAACCCCGGTG
ACGGTTACCTGCTTTGCTTAACCTAACCGGCCAGAAGGTTCCTTTACCGATAGCCGACCAGAGAT
CTAAGGGTTGACGGTTAGTTAGTTCTCTTTTCTCCGTCCGGTAATAGAATTTCTTTACCGATAGA
GCAACCCGGAATCCTGTTCTTACTTTACGAGAAGGTTGTACTATTTATTTAGTAGGAGGGGGAAG
TGGATCTCATTTCAAAACTGATCGAACCAGGAAGTGATCTTTACTAGAAGGAAGGAGAGCGAAAT
CAAGTTCTTTTCTTTTATTATTTAGTATTTTTTATATTTCTTTTT
Right flanking sequence: Indices 122981 -- 123480
GTCTCCATCAGTCAAATAAAACGGATCATTTCTGTGGGATCGAAGAATTTCATGAATTTCATTAT
ACCCCTTCCCTTCTAAGATCCTTACTTTGTGTCTGGTATTTCTATAGGAATAGAATAAATGATAC
ACAGATACAGACAGTAGAAAATATTTTCTATTACTCTTATATTAAATATTAAAACATTAATATTA
AATTAAAAGGAATAAAAGATGCCTTTGAATACTTAAATATAGATATTGGGATGTCTCTTAGTAAT
GAATAATTACTTCTCGCCTGATCTGGAATAGAGTAATAGTAATATATTCTATGTAAAACATAAAC
TTGCCCCGTCTAGGAACTTTTAATTAAGATAGGAATACACGGTTGCACAAAAAAATTGTTTTTGC
ATCAGCCCAGAAAGGTCCGTTGAGCGCCTCGTGGCTATGTCATAATAGATCCGAACACTTGCCCT
GGATCGACTTCCAGATCATAATTGCTCTAGTGAATAACTAACGAA
Found at i:131283 original size:23 final size:25
Alignment explanation
Indices: 131244--131292 Score: 84
Period size: 23 Copynumber: 2.0 Consensus size: 25
131234 CTAGCCTTTA
131244 TTATTTATATATAAGGTATGCTCTT
1 TTATTTATATATAAGGTATGCTCTT
131269 TTATTT-T-TATAAGGTATGCTCTT
1 TTATTTATATATAAGGTATGCTCTT
131292 T
1 T
131293 CCATTTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 17 0.71
24 1 0.04
25 6 0.25
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.55
Consensus pattern (25 bp):
TTATTTATATATAAGGTATGCTCTT
Left flanking sequence: Indices 130744 -- 131243
CTTGGCGGAAACCGGACTGAATGAAAAGGCTAGCGATGTCACCTATAATCTAAGCTGTCCCGCAT
CTTCTTCACCTGCTTAGTAAAATCCGCCTGAGGAAGCATCTGATTACGCCTTTCTTGCTTCTAGG
CTTGCTTTATTTGGCCAGGCAGCTTCCTACTTTGCACCTACACGTCCGCCGTCTTGTAACTTCAC
TTCCTCTTTCGGAGGAGATCTTTCTTCGAGCCGTTAACCATCTCTGACTTTCCTTCCCCATCTGA
GGGCGTAAGAGTTCCGGCAAAGAAAGGAGGAAAACAGACCCAGAAAAAAGGCGCCCAGCCGGTAA
AAGCCTACTCTGATTGCCTTATCCCTTGTCTCGCCCTACTAAGAAAAGTCAAAGTCTATGCGGCT
AGGAACTGCTCTTATGAATACCCGGCTTACACGAATAGCTCCAGAGAGCTCAGACTGAGACTGAC
GGTTAGGTGCTCCGCTTCCTTCATTGGTAAATGCCCTAGCCTTTA
Right flanking sequence: Indices 131293 -- 131792
CCATTTTTTCTTTCCACGAGTTAGAAGTTCACTCCGCTGTTCTCAAGGCATTTCAGAGTAAGCCT
ACCTTCTTATACACGCGTTATACACGCGAGGCTAGAAGGGCATAATCAAGGGTGTGCGAGTGACA
GGCTAACTGGGTTCTCTCCAACTACCTATCCAGCAGGGCAGAAGGGAGTGTGGGATTGGGTTGAC
CTTACCTTATAGGTATCGATGGCATGGAAATACCCTCCCCGTTTCCATAGACTCGTCGGCGAGGG
GGAAGAAGCTAGAGGGAGTTGTTTTGCGCATTAATTAAGCACCTTGGCATGTATTCTCCTGTGCT
GCCGATCGTGGGAAAGCTCCGCTGGCACAAGCACACGGAAGAGCTGGCATGGGCAATCCGGTGGA
CCAATCCTATTATGGTAGAACTAGCTAAAGAAGCCCGAAGAAAGAGCCTTTTGGATGGGGCTAGG
GCATTTGCTTCAGAAGGCAAGCATCAACTCCATGGCTCACTGATC
Found at i:131299 original size:23 final size:23
Alignment explanation
Indices: 131253--131300 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 23
131243 ATTATTTATA
*
131253 TATAAGGTATGCTCTTTTATTTT
1 TATAAGGTATGCTCTTTCATTTT
131276 TATAAGGTATGCTCTTTCCATTTT
1 TATAAGGTATGCTCTTT-CATTTT
131300 T
1 T
131301 TCTTTCCACG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.54
Consensus pattern (23 bp):
TATAAGGTATGCTCTTTCATTTT
Left flanking sequence: Indices 130753 -- 131252
AACCGGACTGAATGAAAAGGCTAGCGATGTCACCTATAATCTAAGCTGTCCCGCATCTTCTTCAC
CTGCTTAGTAAAATCCGCCTGAGGAAGCATCTGATTACGCCTTTCTTGCTTCTAGGCTTGCTTTA
TTTGGCCAGGCAGCTTCCTACTTTGCACCTACACGTCCGCCGTCTTGTAACTTCACTTCCTCTTT
CGGAGGAGATCTTTCTTCGAGCCGTTAACCATCTCTGACTTTCCTTCCCCATCTGAGGGCGTAAG
AGTTCCGGCAAAGAAAGGAGGAAAACAGACCCAGAAAAAAGGCGCCCAGCCGGTAAAAGCCTACT
CTGATTGCCTTATCCCTTGTCTCGCCCTACTAAGAAAAGTCAAAGTCTATGCGGCTAGGAACTGC
TCTTATGAATACCCGGCTTACACGAATAGCTCCAGAGAGCTCAGACTGAGACTGACGGTTAGGTG
CTCCGCTTCCTTCATTGGTAAATGCCCTAGCCTTTATTATTTATA
Right flanking sequence: Indices 131301 -- 131800
TCTTTCCACGAGTTAGAAGTTCACTCCGCTGTTCTCAAGGCATTTCAGAGTAAGCCTACCTTCTT
ATACACGCGTTATACACGCGAGGCTAGAAGGGCATAATCAAGGGTGTGCGAGTGACAGGCTAACT
GGGTTCTCTCCAACTACCTATCCAGCAGGGCAGAAGGGAGTGTGGGATTGGGTTGACCTTACCTT
ATAGGTATCGATGGCATGGAAATACCCTCCCCGTTTCCATAGACTCGTCGGCGAGGGGGAAGAAG
CTAGAGGGAGTTGTTTTGCGCATTAATTAAGCACCTTGGCATGTATTCTCCTGTGCTGCCGATCG
TGGGAAAGCTCCGCTGGCACAAGCACACGGAAGAGCTGGCATGGGCAATCCGGTGGACCAATCCT
ATTATGGTAGAACTAGCTAAAGAAGCCCGAAGAAAGAGCCTTTTGGATGGGGCTAGGGCATTTGC
TTCAGAAGGCAAGCATCAACTCCATGGCTCACTGATCGAGAGTTT
Found at i:168838 original size:28 final size:28
Alignment explanation
Indices: 168807--168863 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
168797 ATTTAACAAC
168807 AACATTATAAGAAAAGATATTAATAGAT
1 AACATTATAAGAAAAGATATTAATAGAT
168835 AACATTATAAGAAAAGATATTAATAGAT
1 AACATTATAAGAAAAGATATTAATAGAT
168863 A
1 A
168864 TCGGTAGTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.58, C:0.04, G:0.11, T:0.28
Consensus pattern (28 bp):
AACATTATAAGAAAAGATATTAATAGAT
Left flanking sequence: Indices 168307 -- 168806
TAACGCAATTCCGGGAGGAGTCGGTAATTGGGCACTGGATCCCTTCGGACCTGGAAAACGTGTAA
CGCTGGGTCGGGGTTTGGTGAACCAACTGGTCGCTCTTCTAGTTGAAGTATCGGGCCCCTTTTTC
GTTGTCTAGGTTACACCTTCGGAATACCCCAGAAAGGGAATTCTTCTCTACTTCCCGTGATCTTC
ACTTTACGCCACACCGACTCCCTTTTCGAAACGTCATAAGGCGTGGAATTAGACCAAGGGGAATC
TCCATAGGAACTAGTCCCTCAGATTTCGCACGTAGGAGATCGAGACACAGCCCCAGGGCTATGGG
GAAAGATGTAGATCGATCGCCCTAGATAGACAACTACATAGAGGGTCTCTACAAGTCTATATATT
CTTAGATTTCGTTCCCCCCGTGACGATCAATATCACAACCAATGAGGTCTGCAAGTTTCACATCT
AAGTAATACCCGATCCGGTAGTTTACGATAAAGATATTTAACAAC
Right flanking sequence: Indices 168864 -- 169363
TCGGTAGTTGTCCGGTCGTACCCAAACAATAAGATTCCAGAGGGAAATGCACCTAAGATCAAATA
TTTCGAGCCGGCTTCCGTGGAAAATTCAGACTTTCTTTTTGATGCTGCGATCACATAAAAACATA
AACTTTGAGGCTCAATAGCTAAATACATGGCAATTGAATCATGAGCCGAGATCATAAAGAGCATA
CTGCGAGTAGGAAGTAGAATTAATACAATGAATTCAAAAGCATCAAACCTCTCTTGTTCGGAAGA
ATCGAAACACATCGAAATGGTACCAGCCGTACTTAATAATAGAAGGATTTGGCAGAAATATGTAA
AATTGTCCCTCCTAAAAAAATTATTCCAGAATAAATGGGCAATAGTTAGGAGAGGTGCGCCAGCG
GCGAGCAGAAGCAAGGTTATTAGATACCTCAGGAAAGCCCGGCCAGAACCACACGTGCAAGTTTC
CCTGCATGTGGCTCGTCCGTGATAACTTCTTCGGATTTGCGTGAA
Found at i:275757 original size:36 final size:36
Alignment explanation
Indices: 275716--275793 Score: 156
Period size: 36 Copynumber: 2.2 Consensus size: 36
275706 CTTTCTCATA
275716 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
1 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
275752 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
1 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
275788 TTTCTT
1 TTTCTT
275794 CTTTCTCATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.10, C:0.22, G:0.10, T:0.58
Consensus pattern (36 bp):
TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
Left flanking sequence: Indices 275216 -- 275715
GAAATCGTTCGGCCGCTTCAAGTGGTGTATTCTCGTACCATACGAGAACTCCACCGGGATGGTTC
TTGTTCGTATATGACATTATGTCGGGTCGGCTAGGCCTTGCCAGATGGGTGCCATAGACAAGAAA
GAAGGAAAGGGAATTGGATTCCTCTTCTCTTTATCTACGTTCTGCAATTAGATAGAACCTGTCGG
TCTGAAACTGAACTCTTAGATTAGTAGGAAAGGCAGTGAGCGGCGCACAGGTTCGATTCCCGGCC
GTGACATCAATGACGAGTACGAATTAAATGTGTTAAACATATTGCTAGCATGATTTGCCCCTCCA
AGCATAGTCCAATATCCCATTCACTCTAGTCAGATAGGATCGTAGGCGATCTGACAGTTACCGAC
TCTCCGGCTCCATTTCGGTGCACGATTGGAGAGTTCATTGGGCCCGCCGCTTTCATGATTCACTC
ACTGACTAAAGTAAAGAAAGAGGCTCTTTTCTCTTCTTTCTCATA
Right flanking sequence: Indices 275794 -- 276293
CTTTCTCATATTCTCCCGGCTTTTCCTGTCGAAATGAAATAGAATAAGATAAGAGGAAGAAGGTG
AGGCTACCAGCTTTGGTAGGAGAGAAAAGTCTCAATTCAATCTAGATATGAATTGAGACGAAAGC
TTGACAAGCCCATTCATTTAAGAAGGAAAGCGAGAAGTTAGTCGAGCACAACCTTCCAATTAAGC
AAGGGGAAAGCCCCGTGAGCAGCCACCAAGAAGAATGGAACCGTTGGTCTAAGGATCTTCACTAT
TGGGCTTTTAGCTTATGAGATCCGGGGTTGGGGAATTCCCCGATCCAGTCCTTTCTTGAGTACTG
GAGTTTAGTTTCACAATCCAGATGCGAGGGAACCATTATTCAAGAAATCCTGCCTTTGATAGTTA
TACTAGTTCCATCCTTGTGCTGGGCGGAGGCAAGGCGGATAGAAAGAAAAGAAAGAGTAGGCCTT
ACCCTTTAGCTAGCCCCTAGGCGAAGGAAAGAAAGAGGGGTAGCT
Found at i:293221 original size:28 final size:28
Alignment explanation
Indices: 293189--293278 Score: 180
Period size: 28 Copynumber: 3.2 Consensus size: 28
293179 CGAGTGACCA
293189 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
293217 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
293245 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
293273 CCCCTC
1 CCCCTC
293279 TCCTGACAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.07, C:0.49, G:0.20, T:0.24
Consensus pattern (28 bp):
CCCCTCCCCCTATGGTCGAGCTGCTTCG
Left flanking sequence: Indices 292689 -- 293188
GTGAAAGTCTTAAAAAAGTGCCCTATCGCGTAAAGCCAAGTATGTGTGGCCCGTCTTCGTGATTT
CCCCCCTACACGCTTACCCTCTCGCGGATGTAACCCTTTCCCTATCGGTCGAGCTATTTCAAAAG
CAGGTTCGCCAGGACCTACTAGTGATAGAAAGACGGATAATGTTTAATGAGGGTTGGAGACAGGT
TTCGAGTCGCCCAATTCAGTTGTCACGGTTTAATGGTGGTAAAGTCCAGAGGTGGGTCTCGACTG
ACTTTCCTTTAAGAGGGTGCCTTTTTTTCGTAGCAGAAAGAGGGCTTGGGCAACTAAATCACGTT
CGTACGAAAACGAGTTGGAATACTATTTCCGATAGGGAAGCCGGGAGCGAAAGCCAACAGGCGAG
GGTTTTGAATTCCAGAGTCTCAGCCGTAAGGGAACGAACTACATAGGATTCTCCAGCTTTTGATC
TTAGAAGGCGACCCAAGGGAGGGCTGTGACTTATACGAGTGACCA
Right flanking sequence: Indices 293279 -- 293778
TCCTGACAAGGTCAGTCTCAAAGACCCAGACTCTTTCGAATCTGTTTACAACCCACTACTCTTAG
AGGTCTGTCGTAAACCCTTATACGAGCAACTCCGTGCCTTGGACTATCGGTCACGCCTCTTGCTA
AAGTAAAGGCCATCTCTATCTACTGATCGGGGCTCTCTCTTTACTACCAAAATGCCCTTTCTAGT
TTTTGATCTTGGCTCATCAGAAGGCTTAGCTATTCTCTCTCTTATTTATGTAAATTCATTAGAAA
GACCCGTACCCTATCCCTCTAGCTGCCGGCTTGGTGTGAAGTGATCATAGCCTGGGCTTAGTGGA
GTCCTTACGATTTTATGAAAGATCGAATGCGACTGGGATCACGGAAGGCTAGCGTTATGCTTTAC
TCTACCTATCGAATCTTCAAAGCGTAAGAACTGAGCTACTTCGTTCCTTTTCATCTTTAATAACG
TGTTCAGTTAGAAGAGCAAATCCCCCTCTCCAACCCCCCAAGGGG
Found at i:294557 original size:30 final size:30
Alignment explanation
Indices: 294521--294581 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
294511 ACATTTCTTT
294521 TAGATAGAAAGGTGTTCTGACTCTATTGGA
1 TAGATAGAAAGGTGTTCTGACTCTATTGGA
294551 TAGATAGAAAGGTGTTCTGACTCTATTGGA
1 TAGATAGAAAGGTGTTCTGACTCTATTGGA
294581 T
1 T
294582 CAAGTCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (30 bp):
TAGATAGAAAGGTGTTCTGACTCTATTGGA
Left flanking sequence: Indices 294021 -- 294520
CTATCTATCCGCGCCGCGAGCTGGCAGGTAGGGGCTTATCTATGTGATTCGCTACGCTTGCTTGC
GCCTATCGGCGGGCTCTATTGCCTGCCGGTTAGCGAAACTTTGACGGTAGCACGAATCGCTACGC
TTCGCTTGTTTCTATATGATAATATGCACCTACCTTGCTGCGCTCCCTGCCCTGCGGAGCAAGAG
AGTGAAGAACGAATGATCCTCCAAACAAAAAGAGTGATCACGTCCGACGTGAGCGAGTGAGTGAA
AGGCGTGGCAAGAGAGCGAGTTCAACTCGCGAACGATCAGCAAGTGAAGTACCGATCCTTTTGCG
CCAGTTGCGAGACTGGTACTTGACGGCTCACGAGCATAGACTAAGGTAAGGTTGTCCATCACTTA
TTTTCTTTCTAACCATAAGAAGACTGAACGCCCAGCTTCGCGGAGCAGCTCTCTCCCCAGCCCAC
AGCATAGTGTGGAATCTGGATCGTTTCATCGAGCAACATTTCTTT
Right flanking sequence: Indices 294582 -- 295081
CAAGTCATAACCTACGCCTTCTACTAGTATACTACTATGGAGAGACTAAGCTCTATTTCAGAGAT
TGGGCTCTCTTACTGTGCTCCGCCCCTACTAGTAAGAAGCTCTTCCCGAGCCAGGTTCCCTGGAT
CTACGTGTTCCGGGGAGGGCCTAAATGGATGAATTAAGAGGCGCGCCCAGGGGCTTCAAGAGCTC
TTGCTCTGCGTATCCTCCTACTTCTTATTCTGAGGATGAGGAATCATACGAACCGCCTACTCGCC
CTACCATTCATTCTAAAAAAAAAAATGAAAGCTGCTCGCCTTCACTAAGAAAACAATCCCTCCCC
TTCTGTTACCTATTTTGACTCATATCTTCGGTATACCGTGATACAAGACAAGCACAGGAAAGGTG
CTTCTTCCAAGCGGTCCCTCGCCCTATTCTCTCTCAATTGCCTATCCTTTCTAGATGAGGGGGAG
TACCTTAGCAGTAGCTTCCAACACTTAAGATTGACCTCCGTGAGT
Found at i:400544 original size:14 final size:14
Alignment explanation
Indices: 400525--400552 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
400515 TCTTATCTTA
400525 TGAGTTAAAGAAAG
1 TGAGTTAAAGAAAG
400539 TGAGTTAAAGAAAG
1 TGAGTTAAAGAAAG
400553 ATGCTAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (14 bp):
TGAGTTAAAGAAAG
Left flanking sequence: Indices 400025 -- 400524
AAATGCGATCTTTTCCGACAAGTCTTTTTTCATTTAGAAGGAGGCCCCTTTTGCTTTAGCACAGG
GCTAGAAAGAAGGCTGTGATCTCGACTCAGATGGCTTTTCACTCACGCGATATTCCTCATATGTC
AAGGGCTGGTAAGGTTTGATGATGGGAAGAGACCTCTCGAGAAATGCAGCTGCGATTGCCACTGT
CTGTGTCGATAGCAGAAAGTACGACTGGAACCTAGACTGCTAACGTTTATAAGACTCCTTCCTAT
GTCGGAGACAGAACCCCTTGTCTTCAGTCGCTATCCCTGGGTGGTACGCAGAAGTCACGGGTCCG
TCCCGCCTCTCGTACACATACAGAAAAGAAAGAGACGGTTTGGAACCGGCCCAGGCCCCAACCCC
AAAGAGAAACAATTCGAAGAAGGGGCCTCGAAAGAAGCGCACTCTCTGGTTTGTATGTGTATGGA
TAGGGAAGATTTGTAAGTAATTTAGACTCTTCTTATCTTATCTTA
Right flanking sequence: Indices 400553 -- 401052
ATGCTAGGTTAATGACTAGGGCCGGTCGTATAAATCCTTGTTCTTTTGTTCTGGGAAAGCGAAAG
CCCGCACCTAAGAAGAGAGAACCTTCCTGTCCTTTAGTTCGGAGATAGAGGGAGCACGTTAGGGC
GGATCAGAAAGAAGGAACTGAAACCTAAGTTCAATGCAGAATTCTTTTTGCGAGTGAAGTGAAAG
TTCAGTTGACTATAGCTTATTGGCAAGCGGGAGGTACAAGTGTCGCAGATCAAATTGTCGGCAAG
CAAGCTCAGAAGAAACCGACTTTCCTTTCCGGCTAGTGGTAGCGGTTGAGAGCGAAGCGAACCTT
TTCTTAATGTAATGTTCATTACCTTCTCCCCCCTTTATTTCCATTCATATTCATTCCTTTCAGGA
TCAGTCGTGGTCTTACAAACTATACCGATGGTATGAACAAATCCCTTTCTTCATACAAATGCGTA
AAAGAAAGATGTTAGCCGCACGCCGTCTACCGTTGAGTTAGCAAC
Found at i:417634 original size:24 final size:24
Alignment explanation
Indices: 417601--417648 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
417591 CCCTCCCCTT
*
417601 AAGATTCCTCACCGCCTGGGTATG
1 AAGATACCTCACCGCCTGGGTATG
* *
417625 AAGATACCTCACTGCCTGGTTATG
1 AAGATACCTCACCGCCTGGGTATG
417649 TTTGCAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (24 bp):
AAGATACCTCACCGCCTGGGTATG
Left flanking sequence: Indices 417101 -- 417600
AGACAAGAACTACATTGCTATACCTGAATCAGTTTGACTCAATGCTTGCACTTAGACCTTTCCCC
CAAGCTTCCTTCTATGCTGCCAGAAGCGGAGAGGAGGGTTTTCACAACACTTAAACCGAAAGAAG
AAATGCCCTAGCTCAGCTTCCTAGCATGACACATCAGCTACGCCATCAGAGACTGAATTAGAGCC
TGGAATGATCCTCCACTTGCTAGTCATGAAATATCACCGCTCCGTCTTTCGTTGCTCTCTTAAGC
TGCTTTACGAGTGCAACCAAGTTCAAGAAACTGCTAATTAAGATACGATGCTGGTATCTATCTAA
AAGTCAATATCTGTGAGAAGCTTCTTTCTCATAAACATCCGAAGCAACGAGAGATGCCCAAAATC
CTATTTCCTCTTTCCTCCATAACCTTACCAATACTCCCTCGCCTGGAATTCTCCCAGTAAGCTGA
TCAGACACAGCCCTGGACTTCCCTTCACTACCAACCCCTCCCCTT
Right flanking sequence: Indices 417649 -- 418148
TTTGCAAGTTGCAGAAAGCATTGTATGGTCTTAAACAGGCATCACGCGCTTGGTATGATAAGTTT
TATAGCTTTATAATCAGTAAAGGCTTTCTTATGAGCCGTAGTGATTCCTCGTTATTTATTCAAAC
TAACAGTTTGCGAACTACAATTCTTGCGGTTTATGTGGATGATATTATTATAACTGGCAGTGATA
CCTCTTATATCTCCACTCTAATCACTGAATTAAGTGCTCCGCTATAAAGAACCTCGGGAACTTGA
ACTATTTTCTTGGCATTGAGGTACTCAAGACAAGAATGATCGTGGACTTTTTTTAACACAGCAAA
AATATGCGTTGGATCTCCTCCAGAGAGCTGCTATGCTGAATTGTAAGCCCTGCTCTTCTCCAATT
AACTTTAAAATCAGTCCTCTGCTGCAGTCTCTTCTACTCCATTTCATAATCCATCTCTGTACAGA
AGCATCGTTGGAGCCCTGCAGTATATTACAAGACCTGATTTGGCC
Found at i:432018 original size:19 final size:19
Alignment explanation
Indices: 431967--432019 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
431957 CATGGATGCG
431967 AACTTTAACAAAGAAC-TT
1 AACTTTAACAAAGAACTTT
* *
431985 -A-GTTAATTAAA-AACTTT
1 AACTTTAA-CAAAGAACTTT
432002 AACTTTAACAAAGAACTT
1 AACTTTAACAAAGAACTT
432020 AGTTAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 9
0.67 0.10 0.23
Matches are distributed among these distances:
16 7 0.27
17 6 0.23
18 4 0.15
19 9 0.35
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (19 bp):
AACTTTAACAAAGAACTTT
Left flanking sequence: Indices 431467 -- 431966
CAATCCCATCCTTCTCGTTCGATCCGTGCTTTTAACGAATTACCACTTATTCTGTGGCCTCTAGC
CTTCTACCCCTCTCCTGACGTCGAGCCGCTTCGCCCCTTAGTCCAGAGCAGGAGCAGCGGATTCG
CCTACTTCAAAGTCAATAATCCGGATTTCCCCTCTTTCCTTCAAGCAAGGCTGACTTCATTAGCT
ATAGGTAGACTTCACACAAATCCAATCGTACAAGCAAGTAGATCAACATCAACGTTGAATAGTTT
CATTCCATCTAGGGTTCCCTGCAAACTTCTTATATCTACCGGGGCAACAACCTCTTCCTTGAAGA
CCCTGTATTGCTTGTCTTTCTTCTCCTAGTTACTTCTTGGATTCGCCGCAAACAGATGACTAAAA
GCGCTTACTAAGCATAGTCCCGGAAATTCCAATGCAATTAGCAGCGAATCTTGCACTTGAGGAGC
AGATCTCTATCTGTAAGAGCAGATTAGGCGCATGCCATGGATGCG
Right flanking sequence: Indices 432020 -- 432519
AGTTAATTAAAAGGCTCTGCGCAGCAATTTTCCTCGTAGGCAGAGGTTGGACAGAGACTCAAACA
TATAAGGCAAAGGTGTGCAGGAAAGGCACCCGGACTTATTTCCAATCGCATATAGAGTGAGCGAA
GCACGGGTAGATCCCATTACAGATTGAGTAGGGGGAACCCCAACTAAAGTAGCAAAGAGAAAGTC
AGCAGCAATTGCTAATCTCTTGATCTATGCACTTTCAATAGCACGCAGAGGTGAGGATCGACTAA
GCATTTCCCTCGACATAAAGTAGGAGAACTCGCCCAAAGGGAACATTTAGAGTTGTTCCAGAAAG
GTCCGCAGGTGAAAGAAAAGAGACTGGCTCTCTCTATCTATTATACTTATACGCAATATCTTGAA
AGGCGAAGAGTGACTACTTCTTTCTGCTTGTATTGTACTTCCTGTTCCTGTAGTGATACAGGACT
CGTGCAAGAGCGCTTACGGCAGGAGATGAGGCTTAGAATCCAGAT
Found at i:433274 original size:27 final size:27
Alignment explanation
Indices: 433236--433315 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
433226 ACTAATGTCG
433236 TTCTCTGGCTATGCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
433263 TTCTCT-G----GCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
433285 TTCTCTGGCTATGCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
433312 TTCT
1 TTCT
433316 GAAGTCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
22 21 0.44
23 1 0.02
26 1 0.02
27 25 0.52
ACGTcount: A:0.14, C:0.19, G:0.33, T:0.35
Consensus pattern (27 bp):
TTCTCTGGCTATGCTATGCTGGAGGGA
Left flanking sequence: Indices 432736 -- 433235
TGATTACCTCCTTCATGCCCGTGGTCTGCTTTGCTCGTGGCTAGGGGAGCTTTCTTCTCTTCAGA
CCAAGAATATCGTATGTGATGTTAGAGAGCATGCTCAGGCTAGTTGGCTGAGGATTCTCCGATAA
CGAATTCTGCTTCTTTACCTGGAGCGGAAAAATGGTTAAGGAATATCTCAGAGCCGATGCGCGAT
CTCCGTGCTTTCCCACTCCGGGGGAGCGGGGAAGAATCCGCATGGGGGGTGGACCGGTACAACTC
AGAAAGAATAAAAAGAGGAAGCCCTATCGCCCGAGAAAAGGGGGTTTAACAAATGTTGGGCCACT
GACTTCGAAGCAAGAAGGATTTTGAGTCCCTTGCTCCAGAACCAGGATTTTAAGTCCTGTTGCAT
CTTCTCTCGGCGAAAAAAAGGTCCTGTGTTAAGCATATAGCTCAACCATAGTGGATGATGAAGAA
AGTACTATAACAATAAAGATCACCTTTAGAGTAAAACTAATGTCG
Right flanking sequence: Indices 433316 -- 433815
GAAGTCTTTGGGTAATGGCACTAAGCTTAATACACTTAGGAAAATCCCACGATAGAGAATGACCT
TCACAGGAACAAAGCTCTATTCAATCCAAGGATAGAGACCTTAAAAGGAACAAAGCTCTATTAAA
TGCCGGTCTCCTGCTGTATGTTTTTATTTTTATTCTCTTACATAAAATTAAGGACATATTGTCCG
AAAACCTCTCATAGCAGGTGTTAAATAAGACTGATGGTCCAGGGTAGCGACACCTGAAATCTTAT
TAATAAGCTCAGGGTTTCACTCAGATCTTTGTGTGGCAGAACGCCAAGACAAGGGTTGCGACAAC
TGAAATCTTATTAATAACCTCAGGGAAAGCCAGGGTTTTACTCGGAAAAAGTACTATAACAATAA
AGAAAATATGTGCAACAAACAATGGATTACTATGTCATTGATAGATATAGAGAGAAAGGAGGAAG
AAAAAAAGGACCTTTTTTCCGGAACTTAAGGTGCGCCCCGCCCGG
Found at i:433276 original size:22 final size:22
Alignment explanation
Indices: 433248--433299 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
433238 CTCTGGCTAT
433248 GCTATGCTGGAGGGATTCTCTG
1 GCTATGCTGGAGGGATTCTCTG
433270 GCTATGCTGGAGGGATTCTCTG
1 GCTATGCTGGAGGGATTCTCTG
433292 GCTATGCT
1 GCTATGCT
433300 ATGCTGGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.13, C:0.19, G:0.35, T:0.33
Consensus pattern (22 bp):
GCTATGCTGGAGGGATTCTCTG
Left flanking sequence: Indices 432748 -- 433247
TCATGCCCGTGGTCTGCTTTGCTCGTGGCTAGGGGAGCTTTCTTCTCTTCAGACCAAGAATATCG
TATGTGATGTTAGAGAGCATGCTCAGGCTAGTTGGCTGAGGATTCTCCGATAACGAATTCTGCTT
CTTTACCTGGAGCGGAAAAATGGTTAAGGAATATCTCAGAGCCGATGCGCGATCTCCGTGCTTTC
CCACTCCGGGGGAGCGGGGAAGAATCCGCATGGGGGGTGGACCGGTACAACTCAGAAAGAATAAA
AAGAGGAAGCCCTATCGCCCGAGAAAAGGGGGTTTAACAAATGTTGGGCCACTGACTTCGAAGCA
AGAAGGATTTTGAGTCCCTTGCTCCAGAACCAGGATTTTAAGTCCTGTTGCATCTTCTCTCGGCG
AAAAAAAGGTCCTGTGTTAAGCATATAGCTCAACCATAGTGGATGATGAAGAAAGTACTATAACA
ATAAAGATCACCTTTAGAGTAAAACTAATGTCGTTCTCTGGCTAT
Right flanking sequence: Indices 433300 -- 433799
ATGCTGGAGGGATTCTGAAGTCTTTGGGTAATGGCACTAAGCTTAATACACTTAGGAAAATCCCA
CGATAGAGAATGACCTTCACAGGAACAAAGCTCTATTCAATCCAAGGATAGAGACCTTAAAAGGA
ACAAAGCTCTATTAAATGCCGGTCTCCTGCTGTATGTTTTTATTTTTATTCTCTTACATAAAATT
AAGGACATATTGTCCGAAAACCTCTCATAGCAGGTGTTAAATAAGACTGATGGTCCAGGGTAGCG
ACACCTGAAATCTTATTAATAAGCTCAGGGTTTCACTCAGATCTTTGTGTGGCAGAACGCCAAGA
CAAGGGTTGCGACAACTGAAATCTTATTAATAACCTCAGGGAAAGCCAGGGTTTTACTCGGAAAA
AGTACTATAACAATAAAGAAAATATGTGCAACAAACAATGGATTACTATGTCATTGATAGATATA
GAGAGAAAGGAGGAAGAAAAAAAGGACCTTTTTTCCGGAACTTAA
Found at i:518610 original size:13 final size:13
Alignment explanation
Indices: 518592--518617 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
518582 TCCTGCGAGC
518592 TTAGTTTATGAAT
1 TTAGTTTATGAAT
518605 TTAGTTTATGAAT
1 TTAGTTTATGAAT
518618 AATGCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTATGAAT
Left flanking sequence: Indices 518092 -- 518591
GGAGACGAGACGTACGATTGAAATCACGTTTATGAAAGCAATGGCTCTTAGCCGACTAAGATGAC
CACATAGTGGTATACTACTTCACGTAATTCACGTAATTTTCCACTTTACCACTATCAGACTAGAC
CGGAGCTTTTGAATAGGGCTTTGAGGATAAAAAGACTAGCCGGAAAGCCATTCCCCTGCTTGCGA
CCGCTGGACCACTTGGAATGATGGAAAAGAGAGTACAGAGAGCATTCCATATGGGGCTTCCCATC
GGGGCTACCATTTTCTCAGGCCCGATCGAGGTTCTCTTCTTTCCCGTTCATATGAAAAAGACCTG
CAATGCTAATCTCGTTAGGCCACCCGAACCCATCGAACCTTTGACAGGAGGAGTTAGATAGGTGA
AAAGATAACAAGACAACACCTGCCTATATCGCTCCTGTCTAAGCGAGCGAGACTTTTTCCATTGA
TATTTCCATATCATGTAGCGAGACTCCACTTTAGATCCTGCGAGC
Right flanking sequence: Indices 518618 -- 519117
AATGCAGCAATCGTAGGGTCGACAGTACCGGTGGGCTTTGAGCTACCAGAGCAAGGAGATAGAGC
TTGAGCTTTTCCTTCATGGACCAAGGCGACTCTCGTTAGCTCTACTTGGGCTTAGTGCGATTCGA
AACTGGGATTTTTTCTAGCCCGAAGAACGAACAAAGACAACAAGGAGCGACTGATAAGGAGCGGT
TCAAGCTTTCTGGCCATTCCAACTGCCTCCATTATTCTACTTTTTTTTTTAAGCGCCATAAGCAG
CCAAGCATAGTGGTTCGCTCAAGCAATGGAGTTTGCGAAACTTCCGTTCCGGTAGTCCTTAACGC
AAGGAAATAGTAAGATCAGACCCTCGAATTCGATTACACACAAGCTGCCAAGTAAGCTCTCGAAA
GAGCTACCTCAGAATGAAAGCTACATCAATCCAAAGGAATTCAATCCGTTATATCTCCACCTCGT
AAAGCCGTAACAGCATCGACTCATTAATGCGCCCTCAAGGGGCAG
Found at i:565503 original size:19 final size:18
Alignment explanation
Indices: 565481--565534 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 18
565471 AAAAAAAAAT
565481 GGATTATATTCTAATTATA
1 GGATTATATT-TAATTATA
*
565500 GGATTCTA-TT-ATTATA
1 GGATTATATTTAATTATA
565516 -GATTATATTATATATTATA
1 GGATTATATT-TA-ATTATA
565535 TATATAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 6 0.21
16 7 0.24
17 2 0.07
18 1 0.03
19 13 0.45
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (18 bp):
GGATTATATTTAATTATA
Left flanking sequence: Indices 564981 -- 565480
AAGTAATCAAGCAGCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCAT
GATGAACCCACCTTAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTC
CCGGTTGGACCTATTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACT
GAATGCTATGAGGAGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGT
TCCCCCGAAATCATCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGA
ACCTACAATCTAACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGGATCT
CTACATGCAATTCGCTCACTTCGGGAAGAGCGGACGGAATGCGACGGGGAGGCCTTTGCTCTATC
TGCTTCTTCCTCTTCTCAGGAATGAAGAATTAGATAAAAAAAAAT
Right flanking sequence: Indices 565535 -- 566034
TATATAATATTCTATATCTATTATTAATATAATATTCTATATCTATTATTAGAATTTAGAATTAA
TAATATAATTAAGCAAGCGGCCCTTTTGCGACTCAAACTGCCGGTACGCTTTCCGGCTCGCAACG
ACTCAAACGGGCGGAGGCTCTCTATTTGCTTGCACTGCCGGCTGTTCGCCTTTAGTTAGAAGTAG
AAGTCGCTCTTTGCCCCACACTTCTAAAAAAGTATGGATTAATTCAGTAAGAAAAAAAACTTGGT
TACGGGAACCGAAGGTTAGGCCGACTACTTACTTTCTCCTTACCCTTAACAGGATTGTCTCCTAC
CGATCGAGGAAAGGCTTAGAATCCATGCTTTGACCGGTAATGTCCAATCTAAGAACGTCTTGTGC
CTTTTCCTGGGCCCCCTTCATTCTGACTTAGCTAATTCAATTCTTTCTATTTCTAATGGGCTTAT
ACTTTTTTCTATATCCCCCGAGAAAAGAAAGTCCTGCTATATCTA
Found at i:565524 original size:15 final size:16
Alignment explanation
Indices: 565494--565526 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
565484 TTATATTCTA
*
565494 ATTATAGGATTCTATT
1 ATTATAGGATTATATT
565510 ATTATA-GATTATATT
1 ATTATAGGATTATATT
565525 AT
1 AT
565527 ATATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (16 bp):
ATTATAGGATTATATT
Left flanking sequence: Indices 564994 -- 565493
GCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCATGATGAACCCACCT
TAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTCCCGGTTGGACCTA
TTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACTGAATGCTATGAGG
AGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGTTCCCCCGAAATCA
TCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGAACCTACAATCTAA
CCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGGATCTCTACATGCAATTC
GCTCACTTCGGGAAGAGCGGACGGAATGCGACGGGGAGGCCTTTGCTCTATCTGCTTCTTCCTCT
TCTCAGGAATGAAGAATTAGATAAAAAAAAATGGATTATATTCTA
Right flanking sequence: Indices 565527 -- 566026
ATATTATATATATAATATTCTATATCTATTATTAATATAATATTCTATATCTATTATTAGAATTT
AGAATTAATAATATAATTAAGCAAGCGGCCCTTTTGCGACTCAAACTGCCGGTACGCTTTCCGGC
TCGCAACGACTCAAACGGGCGGAGGCTCTCTATTTGCTTGCACTGCCGGCTGTTCGCCTTTAGTT
AGAAGTAGAAGTCGCTCTTTGCCCCACACTTCTAAAAAAGTATGGATTAATTCAGTAAGAAAAAA
AACTTGGTTACGGGAACCGAAGGTTAGGCCGACTACTTACTTTCTCCTTACCCTTAACAGGATTG
TCTCCTACCGATCGAGGAAAGGCTTAGAATCCATGCTTTGACCGGTAATGTCCAATCTAAGAACG
TCTTGTGCCTTTTCCTGGGCCCCCTTCATTCTGACTTAGCTAATTCAATTCTTTCTATTTCTAAT
GGGCTTATACTTTTTTCTATATCCCCCGAGAAAAGAAAGTCCTGC
Found at i:565556 original size:25 final size:25
Alignment explanation
Indices: 565528--565585 Score: 100
Period size: 25 Copynumber: 2.3 Consensus size: 25
565518 TTATATTATA
565528 TATTA-TATATATAATATTCTATATC
1 TATTATTA-ATATAATATTCTATATC
565553 TATTATTAATATAATATTCTATATC
1 TATTATTAATATAATATTCTATATC
565578 TATTATTA
1 TATTATTA
565586 GAATTTAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 30 0.94
26 2 0.06
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTATTAATATAATATTCTATATC
Left flanking sequence: Indices 565028 -- 565527
GAAACCGTAGACTTCCATGATGAACCCACCTTAGCCACCTCCGATCAGACAGAAAGATGCGATCG
TTAGAGATTCGACGATTCCCGGTTGGACCTATTCAAGCGATTGAACGAGATACTCGACAACTAGA
AAGACGCACTTGAATACTGAATGCTATGAGGAGAAAGAATGACTATCACCAACCATAAAGACGAT
AAAAGAAGGCACTCCCGTTCCCCCGAAATCATCTTCTGTGCGTGGTTATCCAATCATGATGTGGT
AGGCTTAGTAGGGCTCGAACCTACAATCTAACCGTTATGAGCGGTACGTTTCAACCAATTAAACT
ATAAGCCCCTACGGATCTCTACATGCAATTCGCTCACTTCGGGAAGAGCGGACGGAATGCGACGG
GGAGGCCTTTGCTCTATCTGCTTCTTCCTCTTCTCAGGAATGAAGAATTAGATAAAAAAAAATGG
ATTATATTCTAATTATAGGATTCTATTATTATAGATTATATTATA
Right flanking sequence: Indices 565586 -- 566085
GAATTTAGAATTAATAATATAATTAAGCAAGCGGCCCTTTTGCGACTCAAACTGCCGGTACGCTT
TCCGGCTCGCAACGACTCAAACGGGCGGAGGCTCTCTATTTGCTTGCACTGCCGGCTGTTCGCCT
TTAGTTAGAAGTAGAAGTCGCTCTTTGCCCCACACTTCTAAAAAAGTATGGATTAATTCAGTAAG
AAAAAAAACTTGGTTACGGGAACCGAAGGTTAGGCCGACTACTTACTTTCTCCTTACCCTTAACA
GGATTGTCTCCTACCGATCGAGGAAAGGCTTAGAATCCATGCTTTGACCGGTAATGTCCAATCTA
AGAACGTCTTGTGCCTTTTCCTGGGCCCCCTTCATTCTGACTTAGCTAATTCAATTCTTTCTATT
TCTAATGGGCTTATACTTTTTTCTATATCCCCCGAGAAAAGAAAGTCCTGCTATATCTAATGTAT
TTTTTCCAGGACCGCTTGCTTCTGATCGCGCTTTAGAGTCTGTGC
Found at i:581313 original size:13 final size:13
Alignment explanation
Indices: 581295--581320 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
581285 AAGGAGCTAA
581295 TACAGAATACGAG
1 TACAGAATACGAG
581308 TACAGAATACGAG
1 TACAGAATACGAG
581321 AAAACTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (13 bp):
TACAGAATACGAG
Left flanking sequence: Indices 580795 -- 581294
TCGCCTCGGTTCTTGGCTTTGATCCAATTCCGAAGCTCGTTTGCTCACTAGCCGATGTCATTTTC
AATTGACTTAGTTAGAAAAGTATGGGGATACCGTACCACTTTAAATTAAACAAGCGCCAGCAAAA
TGGAGCTTACCGCGCTGAGTTACGTCGTAGGCGAAGCTTTCGATTCGACAAATGAATGGTTGGTG
CTTCCCTTCTTTAGCCTATTTGCCTATTTGGTAGATTCAATTAGGGCTAGCTCAAAGACTGGCTA
ATCCCAATCCGATGGATCAACTCTTTCGCGTCGCTTAACGACTTGTAACTCTGGCGAGTACCGAT
GCTCCAAATTGGATTACCTAGCGCTTGGGTGAGATGTTCGACAAGAGACTAAGGACCTTTTAGGT
GGGAGTTCCATCCGAGACGGACTGGAATCACCGGCTCATACTAGAGCTTCCGGACGAACTCAAAA
GCGAAAGATCGAAGCCTTACCTTATTCATTCGTGGAAGGAGCTAA
Right flanking sequence: Indices 581321 -- 581820
AAAACTCCTTCGAAAACGAAATCGGAAAGAGAGATGCTTTCAATCCAACAATTGTAATTAGTAGC
CGACCTTTAATTGAAATTGACCAATGTTCGTCTATCGGCTCAAGTCTTTCCAGAAGCCGGAAGGA
AGAGCGCTTTTTTGCTTTTCGTGTGATCACTTTCCATAATGGTTTCCTACCGAAGGTAAAAAGGC
AAACAAAGGATACGGGGACCCAAGCTCTTATACGTGAAGTGCTTTCCGGCAAACTTAGTATCGAG
AAAATCCGTTACCGCTCCCGAAGTCAATTTACCCTCAGAGTCAGAGAAAGTAAATGCGTTTACAC
GTACGCATACATAAACAAAGTAGGGCCCAGGAAAGCCATTCCTGCTACAGTACAGAAAAATGCAT
TCGACCACCTGAACTTGAACGCTCTCTTTCTTTTTAACGTTCTAACTGAACACACCTTGAAGAGG
GAATCATCGAGCGTAAAAGCACGCTTCAGAGCATGTGTGCCGCAT
Found at i:585207 original size:19 final size:19
Alignment explanation
Indices: 585183--585221 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
585173 CAAAGAGCTG
585183 TTTTCTTTCTTGCTT-TGTT
1 TTTTC-TTCTTGCTTCTGTT
*
585202 TTTTCTTGTTGCTTCTGTT
1 TTTTCTTCTTGCTTCTGTT
585221 T
1 T
585222 GGGCTTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.00, C:0.15, G:0.13, T:0.72
Consensus pattern (19 bp):
TTTTCTTCTTGCTTCTGTT
Left flanking sequence: Indices 584683 -- 585182
TTCTCCATCCGCCCGCCAGCAGCAGGGGGGTTCGATTCCCGTTATACGCGATGTGGCGAAGAAAA
GCGCTTGTTATTTGCGGAAAGGAAGAAGTCATCCCTCTTGCTGGAGGAAACTACCTTTCTATCCT
TCTCCTGCCCCTCTCAGTTGGAAAAAGGGCTTTCGACTTTCCCTAATCTCCTTTGCTCCCTAATC
CATTCCCGGTGCCATTCAACTATCTGACAATAGAGTATCTAAGTCAAAGCTGTTCCCGGGTTCAG
GTGAAGAATGTTAGAAAGACTCTCATGAAAAAAACCTCTAACTTGGTTCGAGTGGCTGATAGCTG
CTTATCGCTCCTGTCCAGTCATCTTAGTCCATGGCTTCTGTTTCATGCTTGGTTGATGGAAGACA
GCTTTGAGTGCCGTTACTTTCCCCCTCCATGCTTGAAGTTCATTCCTCCGTTGTGCTTTGTCTGT
CATCTTCTTTCTTCCCTTCCTCGGGCACAGTAAGACAAAGAGCTG
Right flanking sequence: Indices 585222 -- 585721
GGGCTTGCTCCTCTGTTATCCCTGACTCCCTAAACTTAATGAATGAAGGAAGGGTCTCCGCTCCT
TACCCTATCGGGCAAGTGGCTTACACTCCTTGCTTGCTTTCATCCTGCTTTTAGTGCCGCTTGCT
TGCTCGAAGGAGGGGCTACCGCTCTTTAACCTCGTCGGTAAAGCGGCTTGAATAGGACTTTCCCT
ATTTTCATTGGCCTTTTCTTCGATGTCAATGTGCTCAGGTCCTTTCTTTGCCCCTTCCCTTGGGT
TGGGCTCTCCCTCAAATGCCCTTTCCCTTCGTTATCTCTACATGAGTGAAACTCAAGCACTCGAA
TATCAGTAGATTAGCGTCACGCCAACGCAACTCTCAAACCATCGGCGAGAGGAGAGTAGGTCCGG
CTATGACTTTCATAGGAACCGTTGGGCCACTATGTCATAGTGAGAGTAGGGACCCATCCCATATG
ACTCAGAGTCAAAGAAAGCTCTTAGCCTCCGACCAGTGAAGATCA
Found at i:628498 original size:12 final size:12
Alignment explanation
Indices: 628483--628508 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
628473 TTTAATCGAT
628483 GCTTTTGTCAAG
1 GCTTTTGTCAAG
628495 GCTTTTGTCAAG
1 GCTTTTGTCAAG
628507 GC
1 GC
628509 GGCTCCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.38
Consensus pattern (12 bp):
GCTTTTGTCAAG
Left flanking sequence: Indices 627983 -- 628482
GAGAGGTCTTTCGGCTTGGACATGACGGTTGCTTGATATTGGGCGGAGTGGGCTTTGTTTGCTGC
TTTGCAGAGACTAGGCTAGGCCACGTGAATTGACCTCACCCATCACATCATCTTGGGAAGCTCCT
CCCTCCTCAACAAGCTCCACCTCCAGAATATCTAGAACCGTTTGGGATTGGACTAGATTGGTTCA
CTCAATATCCTATATAAAGGAGAAAGGGCCAAATCATATATAATGATATAATTGAAATTAAAGTT
ATGGACTCATTTTATAGATATGTTTATGTCTTATCAAGAAGCCCAAAAACTCTTTGATCTCTATA
CTTTAGAAGAGTTGAGGAATTTCCTGGAGCTCTTTCTTTCCATTTCTTTTCTGGTGTAAAACCCT
CCCTATCAATACTTCCTTGCTATTCATTGACAAGAGTTGTAGGGACAAAAATGAGTAATCGAACC
CCTTAGACCCTTTTGCATACTTCGATCTACAAGGCTTTAATCGAT
Right flanking sequence: Indices 628509 -- 629008
GGCTCCTCATATGAAATCCTGAAAAATGGAAATAGCCCATAAAATGACAGCCATCAAAAGGCCTA
AGTCCATATTCTAGCCTCGGTCTGTCCAAATTCAGCGGTCTCTACCCAAGTAGCTCTGGCCCATG
ATCCAAGGGACCTGCAACCAGTTAATCATTCTTTCTTTATTTTCCAACCACTCGGGCAATCATGC
TTGTTTTATCTTCCAACCAATCCCTTTGATTCCGTTTCTGCAGCAGTATATAATCTCGGTCCCTT
ACCTTGATGCCTACAGCTCAATCTTTTTTTCCAGTGATGGCAATAATATGCGAAATACTGTTTTT
TCTTTTTCTTGGGTTGTTTCTGAATGGCATCATAGCTACACGAGGGAAAGCGATGCTGCCCACTC
TGCCGGGGGCCGCTTTCTTCCCCTCAAAAATGCCAGTTCCACCATCAGGGCCCAGCAAGCAGCAT
AATTCTGTTCCGAGGCTGCGTTTCATTCCAGCACCAGTAGTATAT
Found at i:633760 original size:3 final size:3
Alignment explanation
Indices: 633752--633776 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
633742 TTCACAGTCA
633752 TAC TAC TAC TAC TAC TAC TAC TAC T
1 TAC TAC TAC TAC TAC TAC TAC TAC T
633777 CTTTCTACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TAC
Left flanking sequence: Indices 633252 -- 633751
ATAGAAAGGGTCGACTCTCAATGAACTTCTCAGCCCTACTTTACCATCTTTCTTCTTTACTACAC
TCTGCTTGGATACTATTGAGACAGAAGCATACCTTTCACTTAGACACAAGGATTCTTAGATATCA
ACTACATGCCCTCTTATCTCTATATAGCTGCCACCTTCTCTCTTATTAGGGAGTGGCTAAGGTAT
TTATTGAATCTATTTCCTTTCTCCCCTTTGTTGAGTCTGTCTCGCTAGTCTTCCCAGTTACATGA
AAAACAATAGAAGATAGAAAAAGGGAAAGCTACTAACACTCTATCTAAAAGGGAATAATGGTAAA
ATAAAAAGTCTTGGAGTTGAGGACATGAGTTCTTCTTACCAAGCATCCTTCACCTATAGGGTTTC
ATTTCCTAGGTAAGTGAGAGATTCCACAGAAAAAGAAGCAATGATATCTCTCTATAAGCTTGTTA
TCTTTCCTATTCTCTTGACTCAATCAAAAAGCTGCTTCACAGTCA
Right flanking sequence: Indices 633777 -- 634276
CTTTCTACCTTTTTCAAGAACTTCCATAGCATAATAAGGAGACAATTCAGATAGATAAGAATGAA
AGGATACAACCCTTTTTCTCATATAGCTTCCAGTACTTTACCAGCGGGATGGCAGTAAAACTTTT
ACTAAAGAATCCTTATTTCTAAGACTAGGCTATCCAGTCAGATCCATACGCTTAGCCCTAGAGAT
TGTCTTATCTAATTTAATAGGCTAATCAGGCTAGTTACACATACTTTTCTAGCCAAGCAAGTTCT
CTGATCAAAGGTTAACTTCCATTGCCCCTTTCTGAGTTAGATTACACTTATCCATCTACCTAACT
GAGCAAGATAAGCTTGTCCATTCTAATGCAAAGAGCAAGGAACTAGTAGGAGCTAGTGGTAAGAG
AGAATGTGCTAGATCTTTAGTGCTATATTTGTAGTTACCTCTTTTCCTCTATAGAGAGAGACCTT
TGGACTCATTTTTTCTAAACTATTAGAATGACATCCTTGTTCTAG
Found at i:637160 original size:14 final size:14
Alignment explanation
Indices: 637143--637170 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
637133 GAACCACTAA
637143 CTATAAAGATAAAG
1 CTATAAAGATAAAG
637157 CTATAAAGATAAAG
1 CTATAAAGATAAAG
637171 GAGGTGACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
CTATAAAGATAAAG
Left flanking sequence: Indices 636643 -- 637142
AGGAAGAAACTCCATAACATAAGGGGGAAAGCTCCACTCCTACTCCACCTAAGTTGAATCCAGTG
AAGAAGACTGGAACCTGAAAAGGCATCTTTTTCAACACTTTGATTAGTGTAACTACAAACCGCAT
TCTAGCAGCCCTAAAAAAAGAATCTCTAGCGAAGCTGTCAACTCAACCTAAGGAAAGCGATCCGC
TAGTCTAATCTATTCTCTGCTTTCGAGCAGTGAATTCCGGCCAGTCAACTTAGATGTCACTGGAC
TGGGCAAAAGCCCTTCAGTCAGCTTAGATACCGCTCCTGCTGCGTAAGATAATGTTGTAGAGGAG
TTTGTTGTCCTCAACGTTGACCGATTTCAAGAAGAGTCTAATCTAACGGGTCAAATCAAGTCAGT
TTTTCATTGACCTTAGAAGATGATTTCTTTTCCCCGAAATCCAGTACTGTCGAAAAAACAAAATA
AAAATCTAAAAAGAAAATGGAAAGAAACTAAGATAGAACCACTAA
Right flanking sequence: Indices 637171 -- 637670
GAGGTGACTGTAAAGGTCTCCGACCGAGGCTTTCATAGAAAGGAGCTTCGGTGTCACACTGGTCT
GGGCTTGTAGGGGCACCAGAAGCGGGTCTAGAGCCTGCTTCACACCCAAATCTCTTTTTGGACAC
GGACACTCAAATAAATAAAGCGTGCCCAACACCAACGTACAAGACAGATGCCAGGGCAATGAACC
ATAACCCCATTCAATATGGTTCCGACCTGCCTTGAAGCAGGAAGAAGAGCACCCGGGAAGGAGGA
CTAAGGATCTAATCTTCCCCAAGAGGGGAGAATAGGAAAGCAAAGGCTAAGGCAGGGGATCGGAT
TGAGCACTTTCATTCTTCCGGCGGAATCAAAGACATACCTCGATGCCCAGAATAAGGAAATAGAT
TCTTTATCCGCCTTCCTTAATGAAGACGAGGATTTTTAACTACTCGTATCAGCTCAACCAGTTGG
AATATCCCTTGATCTCGTATCCGTTGGTCAAGATTAGGAAAGTTT
Found at i:651239 original size:15 final size:15
Alignment explanation
Indices: 651215--651244 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
651205 AGGTTATAGC
*
651215 CTTTTTTTTTACTTA
1 CTTTTATTTTACTTA
651230 CTTTTATTTTACTTA
1 CTTTTATTTTACTTA
651245 TTCAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (15 bp):
CTTTTATTTTACTTA
Left flanking sequence: Indices 650715 -- 651214
ACTCATAAACCCAATAAAAAAAGTTTCACCCAGGTATACATATCCTTAGCTTGCGCCCTATTTGA
GACTAAGGCAGGTTTGGAACCCTGTCCTATCACCTTTATCAAATCCCTAGCTCTATTCCTTAGTG
CAACTGTCCTATTCCTACCATGGAAATATCTATATTTCTTTTGTTCTATAGTTTCGGATAGAAAA
GCGGACGGTATCATATATGAAGAAAGAGATTTTAAAGCCATAAGTCGTGCTAGCAACAGTCTTAC
TGTCTTGGCTCCTTTGCCCCGGTCTTTTATTTTAGTAGCACGTTCCTCTACGAAGGTGCGTTTTA
GGCCACGGTAGCAAGTGTTCTGTAAGGAGCTGTGGGACTAAAAGGCTTATGCTTATCGAGCCCTT
AATTAAGAGGAAGATGTGATTTAGTTTTCCCTGTTTTTCGCAAGTTAATCAGAATCGGCAAGATC
CCCTCTTGTTCTTGCTGCTTGGGAAGAGCAGGAAGAGGTTATAGC
Right flanking sequence: Indices 651245 -- 651744
TTCAATTTAAATCGCAAAAAGATGGATGGGCCAAATTGAACAAATCAATTTGCCTGTGCTATCGG
GCTACTCAGCTTCAAATCCTTCACGCTCCTTGGGATGCCTTACAGTCAGGGAATCTCGAAGATGA
AACTAGACTCCTTTTTTGCAGTACCTTCGGTTGAGGTGCATTTATGATTTAATCCAAAGCCTGAG
CCTCTGAACAACCTGATGAATCGCGTTAAATGTGCTTTTCTGGCGTCTTTGAGTTTATGTTATGA
GTTGATCCTAGTTCATAGTAAGTAGAAGGTGTTACGGGTCGGCCTCGGGAATTCGAGGAGCTACT
GACGTTAAGCGTTAAGATTGGACTGCTCTTGGGGGAACAGCTTAGTCCATCTTCAACTCCTAGCA
TGAAAGTGAAAGTCTCAATCCCAGTTCCATATTAAGAAAGTAGACGGACAGAACTCCCCGACCTT
GTTAGGACCCCTTCGGATTGGTCCTCTTCTAGTCGAGTAAGGTGC
Found at i:652857 original size:20 final size:20
Alignment explanation
Indices: 652832--652870 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
652822 AGGTAACTCG
652832 AGAGTA-GAAAGAACTAGAAT
1 AGAGTATGAAAGAAC-AGAAT
*
652852 AGAGTATGACAGAACAGAA
1 AGAGTATGAAAGAACAGAA
652871 CCAGTAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.54, C:0.08, G:0.26, T:0.13
Consensus pattern (20 bp):
AGAGTATGAAAGAACAGAAT
Left flanking sequence: Indices 652332 -- 652831
TCTTCTTTCTCCGTTGTGAAAGGAGTTGGTTCCGTAGTTTTAGAATTCGGCTGATCCCAAGTACT
CCATCTCCATCATTGCATATTTTTATATAGAAAGTAAAGAAGAAAAGGCATAACCAGAAGAATTG
TGTAAAATAAGTGAATTTATCCAGTTGAGGCATGATTGATTTTTTAAAAAGGATTCCCTCCAGAC
AGCTTAACTCCGTCAAGCCTGTACGAGTAAACAATAGATAAGGTTTGCTTGTTGGTTGTTGACCA
ACAGAAAGCATGGGATGCCCCACAACAAATAGATGGGAGCAGGAAATCTTTATCATTCGGCGTAG
TGCAGCTTATATAGAATAGAAGGGGCAAAGCGCTGTTCGTGGCACAGCTTTCTTATATTACGATA
TTTTCATTGATCGTAGCTAATTAGGTGGCAACAACCGAAGAAGCAGAAGAAGTAGCTGCTACCGC
TTCGTGGGCTTCTTCTTTTTCTGAGTCTGCTCGAAAGGTAACTCG
Right flanking sequence: Indices 652871 -- 653370
CCAGTAGCTTTGAGCTTTCACGTGTTTCAGCTCTTGTTCACAATCCAGTTGCTATTGAATCAGCG
TAAGGAGATGCCGATGAGGGTACAAGAAAAGAATGAGCTTTTGTTCAGAGCTTGAATCAGAATAT
CCTTCAGTAACTCCAGGATTCCCCTGGTAGGGCATACAGGACATACCAGGTGAGAAGTTCGGGCG
GAAAGATAGATCGAGTTTACTTTACCCTCTTGATTGACTTTCACTTTAGGACTGAAAGATAGCAA
AGGAAATGGCAGCAGTGCTTTATATATTAGGTCTTCGTTGATCACTTCTGCTTAATTTAAGCACT
TCTCTTTCGAAACCTAGAAAGCGAGAAAGAGAATAGTCAGTTCTTGTGAACGACTCCGATGCTAT
TTCTATTTAAGAAGATGGAGGAATAAGCGATGCTGCTAAGATCTGCAGTCGATTTAGCTCTTGAG
GGAAGGGAAAGGCGGACTTTAATTTGATGGGCTTTTAGGACTGGC
Found at i:709346 original size:51 final size:51
Alignment explanation
Indices: 709270--709372 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
709260 TGAATGCGCC
709270 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
1 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
709321 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
1 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
709372 T
1 T
709373 TAGATTCTAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.19, C:0.31, G:0.23, T:0.26
Consensus pattern (51 bp):
TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
Left flanking sequence: Indices 708770 -- 709269
GTGCTTAAACCAAAAAAGATCCTCAAACTCCGCTCCCCAAATTTAGGATTTAGGATGTGCTTTCT
CTATTTCCGTGTCCTGCTCCAACTCGATTTTTCAGTGGTTACGAAGAGATTCAACCTTCTTTATG
ATCCTCAAAGGGTTCGGGTCTTCTTGTCTTGGTTCAACGCGCTACAGATCTGTATATGGGACTGG
GGCAGGGGTTCTTCATCTATCAAGAGAGGGTTCCCGGTAATCAAGCTAGAACTCCTTCGGACCCT
TGCTTTGTTTTATCTTCGGAAGTCTCTACTCAGACGGAGATGGGTTTTGTTGATCCAGGTCGTAC
TTTATTGACTCAAGGAAAGTAGGTTTAGAAGGTGACACCTCCGCTAATTGTCAAATTGCGTCTAT
CGGATAACTACTGTAATCTAATTTCTCAGGTTCCTCAATGCTGGCAAAAGAGCTTTGAGACGGAG
TCCTTCCCGCCCCAGGATAGAATGTGAATCAATAATGAATGCGCC
Right flanking sequence: Indices 709373 -- 709872
TAGATTCTAGTGGCTTTCTCTCTTTTTTTCTCGCCCTAGCAGCAGAAGGCTACGCTCCTCGGATT
CGTACCTCAGACTTAGAATCTTCGTCCTAAAGTTCTTAGAATTCAGTGGCATGGCTGAGGGGTAT
CTACTAAATCTTACCTTCTGGATTAAGCCTAGCCGACTATCGCTATCGATGCTTTTGGAGATAAA
GTTAGCCCTTAGGTTCAGAATAAGATCCCCTTTTTCCATCTAGACTAAGCCTAGAAAGAGAGTGA
GCCGATCAGAACTAGGAGATGATAGGATAGCTATGCTGGCTGAAACGCGCTTCACCTTAAAAGAG
ATACTTTCTTAAGGTGATCGGTTCATTGGCAACGACAGATAGGCGCGATCAAAACATTGCTAATA
TGAGACCATCCTCTGCCGGAGGGATCAGTTTGACCAGGGCTCAAATCAGACCATGTAGGGCTTAT
TCTTTCTAAGAACAGTAATCCCAGGCTGATTAGAAAGCTTACGGA
Found at i:711396 original size:18 final size:18
Alignment explanation
Indices: 711373--711408 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
711363 TAAGTTTTTT
711373 AAGTGAATGGTAAGAAAA
1 AAGTGAATGGTAAGAAAA
711391 AAGTGAATGGTAAGAAAA
1 AAGTGAATGGTAAGAAAA
711409 GGTTTGGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.17
Consensus pattern (18 bp):
AAGTGAATGGTAAGAAAA
Left flanking sequence: Indices 710873 -- 711372
ACCTGTGCATCTCAACCCCAGACAGGAGATGACTTTGATTACCCGTTCCGCACCTGTATGACTGA
ATTTCATGCTTCAAAGCAGAGTTGAATCAGGCTTGAAACCCTAGCACCGAACCCTAGAAGTGAAC
TACTCGAATTCAAAATAGGCTAATGAGTCCGCTGCACACTTTCTATATCCGTACCTAATGCCCCA
GGAAATCCAATCATTCGACTGAGAGTTCCGATCCATGTACTGTGCCTCTGAACTAGGACTCCTTA
CTTGACTTCAGAATGAGATGAGGGATCTAATACAGAATTCCTAGCCATCACAGCTTCCGGCTTCC
CTTCCGCACCTGGCTTAGTTCATTTCATTCAAACTAGGCTAACAGAACTAAGTGAAGTCGTTTCA
TTCTCTTCCCCCCTTGCGTATTGCGTACTTACTTAATAAATGAATGAAACACAGTCTAATGCCTT
CCTTCCCCCTCACTCTCCTCGGTCAAGTGCTTAGATAAGTTTTTT
Right flanking sequence: Indices 711409 -- 711422
GGTTTGGTACTCGG
Done.