Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_058644
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 312598
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:15594 original size:24 final size:24
Alignment explanation
Indices: 15549--15594 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15539 AAAAATAAAC
* *
15549 TGGTTCACGTAAGAATGGACGTCT
1 TGGTTCACGCAAGAATGCACGTCT
*
15573 TGGTTCACGCAAGAGTGCACGT
1 TGGTTCACGCAAGAATGCACGT
15595 AGAATACCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (24 bp):
TGGTTCACGCAAGAATGCACGTCT
Left flanking sequence: Indices 15049 -- 15548
AACAAAAGATGTGCTCCAAGTCCTTGGGATGTTGAACAGAATCCAACCACACCGGAATGGATGGT
ACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTATCAAGGAGACGAAAAGCTCTG
TGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTAACAGAACTTTTCAAAATTGAA
AACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAACGAATTCTTCAAATTTTAGGC
GGGATGGGGATTGTAATTTTTTATACTTCTCGAGGTATAATGACAGACCGGGAGGCTAGATTCGA
AGGAATCGGCGGATAAATTTTGTGTTATATATGGTAATCCTTCTGATATCCGAATTAGATCCTAA
ATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCACTCCTCCCCCATTAGTTG
ATACTTCAAGGAGGTTTTACCCGGAATTAAAGAAAAAAAATAAAC
Right flanking sequence: Indices 15595 -- 16094
AGAATACCAAAAGGACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGA
TGTAAGGGGTCGGGTGGTTTATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAG
GGACACCATTTGCTGCTCAAACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATG
CAACGAGCGGAAGTTATGAGGTCCTGGTCTCGGAATCCCATCTTCCAAGGTCAGGAGCCACGGAG
CCAGAAGACCGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATAT
CCCAACTATTCTCTATCCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAGATGCCGATAAG
GAATAGCCAGTTATAGAAGCGGGTGGCAGGGAATGAAAGCACTCCCGCGCTATCAAAGTAGAGAT
ATTAGTTAGAGCTAGGGGCAGGCCATCTATTCCTGCTTGACTTTC
Found at i:17847 original size:1 final size:1
Alignment explanation
Indices: 17841--17867 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
17831 CTCTTGTCTG
17841 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
17868 GAATAGGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 17341 -- 17840
AATAGCTTTTCTCTGAATCCACCACTCACTCTCTTTCGGGTAGGGTTAACAAGAAAGTCAAAGCA
ATCTCCTCAACCTAGAAAGAGAACTCCGGGATCTTCTTTTTCTTCTTAAGAACCCGAAGGCGAAC
TAATCCGTCTTGGTGCAGCTCCTAGTCCTGATCGATTGGCTACCGGGTGTTCACTCAAACTAAAA
AGAAAAGGAATATAATATAGAATCCGGATCCTCATCTCCTTCCCGCTTTAGTTTCACTCTTATCT
CGGTTGCTAACCGGTGTGGGAGATGAAGCCAAGTCCTTTCCCTTCAAGGATCTAACTGCCACTCT
TTCTAGTTTCATTCAACTGCCACTAACCCATATGCTTAAAACATCTCATTGGAGGTGGGATAGAG
CTAATTCTGGGATCGATCGAATGTCTCTCATTGTGGTCTTGATTTTAAGCTAGTACAATCAATGA
TTCTGGTATGAATTTGGTAGTCATCTTGATCTCTTCTCTTGTCTG
Right flanking sequence: Indices 17868 -- 18367
GAATAGGTCTTCCCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGTTTAT
GGATAGAAAGAATATCCCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTCTTTC
AATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCACTAGG
TTAGATCTCGTCTGTGATCCCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATCGATCGTGGC
CTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGGCACCTTA
CAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGTCCCAGC
AGGCTACCTCATCGGGAAATCTAAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATACATTG
ATTATCTGGGTCCGATCGTCGCTAGAGGCCCGTCGACTATAATAC
Found at i:31344 original size:27 final size:27
Alignment explanation
Indices: 31306--31359 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
31296 GAAGTACGAC
31306 GAAAAGGGTATGAAATAGGTTGCTTGT
1 GAAAAGGGTATGAAATAGGTTGCTTGT
31333 GAAAAGGGTATGAAATAGGTTGCTTGT
1 GAAAAGGGTATGAAATAGGTTGCTTGT
31360 AGCGATTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.33, T:0.30
Consensus pattern (27 bp):
GAAAAGGGTATGAAATAGGTTGCTTGT
Left flanking sequence: Indices 30806 -- 31305
CACTTCCACTTAACAAAGGAAAGATATCACACACTACACAAGACAATCATGTGCAAGCTGCTTGA
GTTGAATCAGCCTCAATTCCTCTCTCACTCACGATGAAAGCTAAGAGCTTGCTCGAAGACAGCCT
TGACTTTATAGTTGTAATCTATCCTATCCTTTAGGCGGGGATAGGTTCATAGGAGGACTTGGTTA
CATAGGAAGGAAAGGCTTAAACTAGAAGGGATAAGAAGGGGAATTTGTGCAACACTCTTAGTAGA
AGGCCGAGTTGAAACTCCCTCTATCCTCAGTTATTGCGTACAGGACAAGCAAGTTATTGAGGGCT
CTTTATGCCAAATACTTTTAAGGGGATAAAACAATAAATCTCCTAAGCAATAAAGATCTTCCTAT
TGATAGTGAGACTGGCTCCCGGGGAAAAGGAATTACACTATATCTTGGCAATGGCACTCCAACAA
GCTCGGCAGGGAGAGAAAGAAGAGAAGGAGAAGAGGAAGTACGAC
Right flanking sequence: Indices 31360 -- 31859
AGCGATTTCGATTGCTTATTCGGTTGGGATTACCAGCCGACTTGCCTGACCAAAGAATAAGATAA
AAAGAAGAGTTCCCGCCTACGGCTACATGCCCATTAAGAGCTATACCTGGAGTCGAGCTAACTGC
ATAAGAAGAGGGGAACTTTCCTAAAAAGCCTAATAGCAATTAACCGCATTGGAAACGACGAATCA
CACTCTGAAAGGAGGCACCCTCCCTTATTACGTTACGGTCGAACCTCGCCTTTCTTCCTTCCTCT
CCCGTTGGTCGAGCGTCTTCAAACCTTCGCTCCAATACTTTCGAACAACTCTCGTACCCTTCGCT
CATAAGCTAACTAAGAGCATGCCTTCGATCCGGCGTGAACTCTTTGCATTGCCTGTAGAGTAGAT
GTAGTAGATTGAGATCTCTCGACAACCGTAAGAGGTTAAGGTTCCAACCTGGGATTGTAGTTCAA
TCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTCGAG
Found at i:47823 original size:27 final size:27
Alignment explanation
Indices: 47793--47844 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
47783 TATGGGTAGG
*
47793 AGTCAAGTGGAACATAGAATTGTTTGT
1 AGTCAAATGGAACATAGAATTGTTTGT
*
47820 AGTCAAATTGAACATAGAATTGTTT
1 AGTCAAATGGAACATAGAATTGTTT
47845 ATTGACAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
AGTCAAATGGAACATAGAATTGTTTGT
Left flanking sequence: Indices 47293 -- 47792
GAACCGAAGGCTGTTTGCGTACTTGCTTGTTAAAGCCTGAAAAGAAGCCAATAAGGCGCAGTTAC
AGCTACATTGGATAGGGAAAGGGTCGAAGTTGCGAAATCAGGCATAGGGTGTACGAATAGCACTG
ATCGTAGACCATCCAGATGCTTATGGGGCAGAACAGACCGATTGATTAGTTCCCGTGATCGTAGA
TCCACTTTAGCTAATGCAACTCGGGAAGAAGCTGCTAAGATCCCGTCGCTTACAAATGCTCCAGC
GTGAAATAAAGACTTTTTTAGGTACAGGGATAAATTCGTACAAGAGTGCGAGGACGGAAAAGAAA
ACGACCTTCTTTGACGCATGTTCTCCCAATAGTGCGAGTACTGACTTGTTCGTAGAAAAGAAGAG
TCCTGACTAGTATACCGTCTGCTATTCTTACTAAATCTCAAGATTGAATTGGTAGTTGTACAATT
GAACACGGTATGGGAACTATACAAATTGAACACGGTATGGGTAGG
Right flanking sequence: Indices 47845 -- 48344
ATTGACAAGTTTGTGGGTATGTGGTTTTTGCATTTCGTTCAATAGGGGGAACACGAGACCTATAA
AGAAAGGGGAATACAGATAAATGTTTTTTAGATTTTGACGCATTAGTAGGATTCATTCTTTTCCT
CTCCACAGATACCGAGATCTATCCTTAGATAGACGCACTATAAAGTTGAACAGGAAAGTTGAGAC
TGGCTTGTTCATGAGGCTAGTTCAGGAATTAAGGTTTTCTAGTTTCAATCTATAAATACCGTTTA
GCCCTCACTCGCCGGTGGGCTCACAACACTTGCTTTGTTGATTGAATCGATCGGGATGCCCTCGG
GGGCATCCCTCCCTGTTGTTGTTGATTGAACAGTGGAGATTCTCATACTTGTTAGCTGACTTCTT
GCTTCCTTCGTACATTAGCTGCACTAGACTGTTGAGCTATAGAGTTTAGACTGACTGACTCCATG
GCACTAGTTAATAGCTATCATAGATCGTTCCGGCCTGTGATCATT
Found at i:107576 original size:20 final size:21
Alignment explanation
Indices: 107546--107589 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
107536 AAGACAGGCA
107546 AAGGTAAGGGGAAAAACAGAT
1 AAGGTAAGGGGAAAAACAGAT
*
107567 AAGG-AAGGGGAAAAACAGTT
1 AAGGTAAGGGGAAAAACAGAT
107587 AAG
1 AAG
107590 AATGACTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.52, C:0.05, G:0.34, T:0.09
Consensus pattern (21 bp):
AAGGTAAGGGGAAAAACAGAT
Left flanking sequence: Indices 107046 -- 107545
TCTAGCAAAGAAGTCAGCTATGGGCAAGACTTGGGGCGGGCCACCAAAGCGGGTTTAGCCGGTTA
GAGCTCAAGAGAATCGCTTCACGCCTTGCTTGCAAGAGCTAGACAGCAAAACCATTCCTAGCCAC
CATTGCTTTCGAAAGAGCCACCATTTCAGGGAACATCTACTTGATAATTTTCTATAGTGAAAGCC
TTTTTCCAGGCAAAGACCCCACTCATAGGGTGAAGGCAGCCATCACTGGAGAATAGCTCCTAGCC
TTATTCTAAGAAGGCGCATGCCATCAAACGAAAGGAAGGGCCCAAACCGTTAGGGAGCATATGTT
TCCAATAGCAAGAGTCAGTCCAAGCAGCGGAACACGTTACCCATTTCAACTAGGGAAGTTTCCAA
ACTCAAATTCGAAATGAGATCTTCCATCTTGATTAGCATGGTAGGTAGGCATGAAAGATGAGGCA
AAGAATGTTCCGCATCTCCCCGGCCAGAAGCTTTCAAGACAGGCA
Right flanking sequence: Indices 107590 -- 108089
AATGACTTTGCTAGGAGTTAGGACCTTTCATCCAATACATGTCCAGGGGATTTTGATCCCAATAG
AATGCTATTTTACCTAGGTCAAAACCACGTTAAGGATACCTCTTTATACCCTTTCTATTATAGGC
TTAAAGCATGAGGGTGGACCCTTATTTTAGCTTGCCTATAGCAGGTATTAGAGAAGGATGACCCG
CATGTGGGTGAAAAGCCTCTCTAATACTAATAGCGGAGAGTGATAGTACGATGGATAGGTCTCAT
CAGAGGTTCTGGCTGGTATTGCTGCTATAAGTCCGTTCGGGGAGTCCGTGGCATAAACAAAGAAG
GATTTGAGTCTGAGAAAGACTGTTTCCCCATTTTCATACGAATAGTGAGAAATCTCAGAGTTTAT
CCAGTTGGGGCATAGAAAGAAGACCTGAACTCGGTGTTTCCTCAATCTGAATAGATCAATCTGGA
TTATAGGCCAGCAAGCCCGGAACCAGCAAGTGGGAGCCTGCTGGC
Found at i:112295 original size:39 final size:39
Alignment explanation
Indices: 112241--112319 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
112231 CTATTTTCTA
*
112241 TTCACTCATGATCTGGCCTAGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
*
112280 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
112319 T
1 T
112320 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
Left flanking sequence: Indices 111741 -- 112240
GCCCACACCTGTGTAGAGTGGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCGACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTATAATCAATTTAAAACC
ATCTGCTAGAGGTTGTAACAATCCAAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACTGCTATGTACATTTTCTATTTTCTA
Right flanking sequence: Indices 112320 -- 112819
GAAGGATGGGACCTTTTCTCGAAAAAGAAAGGAGATTCTATTTCTTCTTCCAAGCCCTTCTTAGA
AGATGCAGTCAGTAAGCTCTCACTTATCTTCTTCATTTACGAAAATAGATAGATAAGAAAAGATG
TCAGCCTCTCTTTTCTCGCGGAACACTCACTTCATGGAGCTATTTGAATTGGAAGACAACGACAA
AAGTGAAAGAAGGAGGTCTATTTCGTTGATCGATGTCAATGGACCAAGAAATCTGTCCTTTGCTG
AAAGCTCATAGGGTAAGAAGAATTGAAAGGTAGGTTTTGTCAGTGATTAAATGGAAAGGTCAGCT
GGAGCGAAAACCAATCAAACTCAGAAAGATAGGTAGATCGAGCGCGCTGAGGGAAATTCGAGAGA
TCCGGAGACATGGCCACTACTGGCCTACGGTCCTTGCAGATTACATAGCACATGCTAAGAGCTGC
GATGCCTGCCAGAGGTATGCAGGAATCCAGCACAAGCCGGCTTCC
Found at i:116247 original size:18 final size:20
Alignment explanation
Indices: 116224--116322 Score: 89
Period size: 21 Copynumber: 5.0 Consensus size: 20
116214 TAGTCGAGAA
*
116224 AAAGACTGA-CATGA-AAAC
1 AAAGACTGATCAGGAGAAAC
*
116242 AAAGACTGATGAGGAGAAAC
1 AAAGACTGATCAGGAGAAAC
*
116262 AAAAGACTGATGAGGAGAAACC
1 -AAAGACTGATCAGGAGAAA-C
* *
116284 AAATACTGA-C-GTGAAAAAC
1 AAAGACTGATCAG-GAGAAAC
*
116303 AAAGACTGATGAGGAGAAAC
1 AAAGACTGATCAGGAGAAAC
116323 CCCCGTGAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
18 9 0.14
19 13 0.20
20 15 0.23
21 28 0.42
22 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.24, T:0.11
Consensus pattern (20 bp):
AAAGACTGATCAGGAGAAAC
Left flanking sequence: Indices 115724 -- 116223
AAGCTGGAAGATAAAATTGTGAAAGGTTTCTTTCTTGCACCAAAAGCTTATAGTTACTACACCTT
GGAAGGAAGCACAGTCAAAAAATACAAGGGACCTGCTAAAGATAAGGTCACTCCCGAATGGTTTG
AGAAACAGTACGCAGAACCATCGAGAAGGGTGCAGGTCAAGGTGGATGCAAAATTCAGGATTGAT
TGGGAAAGTTTGGAGATCAAAAATAAAGAAATCATCTTCAGTTTAGGTCTGAAAGAGGGGTCTAA
GAGGTTACCCGTATATGACAGTAATAAGAACTGGGTGGATACTGAGCCTATTGCTATACATGACT
TGTCTAACATAGACTACATTAGTAGAAAAGTGATTTCATCACTAAGTGATAGAGTACTCCATCTT
GAGAATGAGAGACTCAATGAGAAATTAGAAGAGAGGAATAGAGAGATTGCCAAGTTGAAATCACA
GATTGAAGTACAGACAGGGGTCACTAACCAAACATTAGTCGAGAA
Right flanking sequence: Indices 116323 -- 116822
CCCCGTGAAAAGACTAGAGCCCTCTGTGCATCTCCTCCATGAATGTGATCAACAAGTATTTTAGT
ACCAACCTTGAATCTTATAGCACTTGAATCTTATAGCTAGCCTAAAATTTAGTATAGATAGGAAA
GAGGTAAGAACCAGTGTCTATTTATTGCATGCCTAAAAACAAGTTTGAGTTGAGAAGGGATCGGA
GATGAATGAAGCATCAAGGACATCCAAGACGTACGGAAGAACTTCATATAAAGGGAGTTCTTGCA
TTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGCTTTGGCCCTTCTGTGGGCTTTCATCGAG
GTTTCATCGAAACAGGACCATTTTGAGGACTTTCTTTGTGATGGTTCATGTAGGCTTGGGTCTTT
CATTCGGGCCCTATTGGGTGGGGCACCCTGTGGGCCAATGCGTATAACTTGGGCTTTCTTAACGT
GGCTCATTTGACGACTCAGTACATGGATGTCACGAGTCTATTGGC
Found at i:116266 original size:21 final size:20
Alignment explanation
Indices: 116238--116322 Score: 109
Period size: 21 Copynumber: 4.2 Consensus size: 20
116228 ACTGACATGA
116238 AAACAAAGACTGATGAGGAG
1 AAACAAAGACTGATGAGGAG
116258 AAACAAAAGACTGATGAGGAG
1 AAAC-AAAGACTGATGAGGAG
* * * *
116279 AAACCAAATACTGACG-TGAA
1 AAA-CAAAGACTGATGAGGAG
116299 AAACAAAGACTGATGAGGAG
1 AAACAAAGACTGATGAGGAG
116319 AAAC
1 AAAC
116323 CCCCGTGAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
19 10 0.19
20 15 0.28
21 28 0.52
22 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.25, T:0.11
Consensus pattern (20 bp):
AAACAAAGACTGATGAGGAG
Left flanking sequence: Indices 115738 -- 116237
AATTGTGAAAGGTTTCTTTCTTGCACCAAAAGCTTATAGTTACTACACCTTGGAAGGAAGCACAG
TCAAAAAATACAAGGGACCTGCTAAAGATAAGGTCACTCCCGAATGGTTTGAGAAACAGTACGCA
GAACCATCGAGAAGGGTGCAGGTCAAGGTGGATGCAAAATTCAGGATTGATTGGGAAAGTTTGGA
GATCAAAAATAAAGAAATCATCTTCAGTTTAGGTCTGAAAGAGGGGTCTAAGAGGTTACCCGTAT
ATGACAGTAATAAGAACTGGGTGGATACTGAGCCTATTGCTATACATGACTTGTCTAACATAGAC
TACATTAGTAGAAAAGTGATTTCATCACTAAGTGATAGAGTACTCCATCTTGAGAATGAGAGACT
CAATGAGAAATTAGAAGAGAGGAATAGAGAGATTGCCAAGTTGAAATCACAGATTGAAGTACAGA
CAGGGGTCACTAACCAAACATTAGTCGAGAAAAAGACTGACATGA
Right flanking sequence: Indices 116323 -- 116822
CCCCGTGAAAAGACTAGAGCCCTCTGTGCATCTCCTCCATGAATGTGATCAACAAGTATTTTAGT
ACCAACCTTGAATCTTATAGCACTTGAATCTTATAGCTAGCCTAAAATTTAGTATAGATAGGAAA
GAGGTAAGAACCAGTGTCTATTTATTGCATGCCTAAAAACAAGTTTGAGTTGAGAAGGGATCGGA
GATGAATGAAGCATCAAGGACATCCAAGACGTACGGAAGAACTTCATATAAAGGGAGTTCTTGCA
TTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGCTTTGGCCCTTCTGTGGGCTTTCATCGAG
GTTTCATCGAAACAGGACCATTTTGAGGACTTTCTTTGTGATGGTTCATGTAGGCTTGGGTCTTT
CATTCGGGCCCTATTGGGTGGGGCACCCTGTGGGCCAATGCGTATAACTTGGGCTTTCTTAACGT
GGCTCATTTGACGACTCAGTACATGGATGTCACGAGTCTATTGGC
Found at i:116415 original size:16 final size:16
Alignment explanation
Indices: 116394--116424 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
116384 TAGTACCAAC
116394 CTTGAATCTTATAGCA
1 CTTGAATCTTATAGCA
116410 CTTGAATCTTATAGC
1 CTTGAATCTTATAGC
116425 TAGCCTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (16 bp):
CTTGAATCTTATAGCA
Left flanking sequence: Indices 115894 -- 116393
GGTGGATGCAAAATTCAGGATTGATTGGGAAAGTTTGGAGATCAAAAATAAAGAAATCATCTTCA
GTTTAGGTCTGAAAGAGGGGTCTAAGAGGTTACCCGTATATGACAGTAATAAGAACTGGGTGGAT
ACTGAGCCTATTGCTATACATGACTTGTCTAACATAGACTACATTAGTAGAAAAGTGATTTCATC
ACTAAGTGATAGAGTACTCCATCTTGAGAATGAGAGACTCAATGAGAAATTAGAAGAGAGGAATA
GAGAGATTGCCAAGTTGAAATCACAGATTGAAGTACAGACAGGGGTCACTAACCAAACATTAGTC
GAGAAAAAGACTGACATGAAAACAAAGACTGATGAGGAGAAACAAAAGACTGATGAGGAGAAACC
AAATACTGACGTGAAAAACAAAGACTGATGAGGAGAAACCCCCGTGAAAAGACTAGAGCCCTCTG
TGCATCTCCTCCATGAATGTGATCAACAAGTATTTTAGTACCAAC
Right flanking sequence: Indices 116425 -- 116924
TAGCCTAAAATTTAGTATAGATAGGAAAGAGGTAAGAACCAGTGTCTATTTATTGCATGCCTAAA
AACAAGTTTGAGTTGAGAAGGGATCGGAGATGAATGAAGCATCAAGGACATCCAAGACGTACGGA
AGAACTTCATATAAAGGGAGTTCTTGCATTGGGGCTTGCTTTGATGATGGGTAGGCTTGTTGTGC
TTTGGCCCTTCTGTGGGCTTTCATCGAGGTTTCATCGAAACAGGACCATTTTGAGGACTTTCTTT
GTGATGGTTCATGTAGGCTTGGGTCTTTCATTCGGGCCCTATTGGGTGGGGCACCCTGTGGGCCA
ATGCGTATAACTTGGGCTTTCTTAACGTGGCTCATTTGACGACTCAGTACATGGATGTCACGAGT
CTATTGGCATAGAATATGGAATCTTTTCCACGTAAGCTGGTTGTGTTTGTTTGCTCATAAAGGAA
GTGTGTTTTGGAAATCTTTTTTTTGCTCCGCAAGGTAGCGCCAGT
Found at i:156922 original size:18 final size:18
Alignment explanation
Indices: 156882--156924 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
156872 ACCGCCCTGC
156882 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
156901 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
156918 CATAGTC
1 CATAGTC
156925 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 156382 -- 156881
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 156925 -- 157424
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:158562 original size:21 final size:21
Alignment explanation
Indices: 158536--158579 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
158526 ATATCTAGTT
158536 TGAATTCTAAGACCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
*
158557 TGAATTCTAAGGCCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
158578 TG
1 TG
158580 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTCTAAGACCCTCTTTA
Left flanking sequence: Indices 158036 -- 158535
CCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTG
CTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATA
GGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTT
CCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTA
GTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 158580 -- 159079
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
TACTCCCTCTTTGAAGGTCGAGCCTATAGAAAAGTAAATATGGTCTAGCTAGTTATCACTTCTCC
CCCTATAGTTATAGCAGTACTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCA
TTCCTCTCCCTCTGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTC
CTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGTTTGGAA
Found at i:160184 original size:25 final size:25
Alignment explanation
Indices: 160156--160205 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
160146 AAATTGGGGT
160156 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
160181 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
160206 GGAGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AGCTCAGGAACTATAGAATCTCTCA
Left flanking sequence: Indices 159656 -- 160155
GTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGATTCATCTTGTCCTTGGCTTGTGAAGGGAATG
AGGTAGGGTAGCCAAAGCCCCCAACAAAGGGATAGGGCAATCCTTCCCAAGTAATGCATAAGCAA
GATCAGGACTAGAGGGGTGTGAAGAGTAGGGGGATCTCTTGTGCAAAGCAAAGACAGGTACGTGC
TAGCAAAGAAGGGAAGTGGCAAGGGATTTCAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGA
GTCTTCCCCTGCCTAATTGATCTAATGATAAAGAAGTAGGCTAAGTAAAATAGAAAGTGTGTGTA
AACAATAAGTAATGACTTGCTTTGTGAGAGCTCAGTTTCTAAGACGAAGGCTAAGAATTCTCTAC
TAGAGGGATTGAAAAGATCGAGGGTAATTTCTGAGTCTTGATGGACCTTTCTTATTATAGGCCAA
AGGAATAGCTAAGGACTTCTTCCCTCATTCTCATCAAATTGGGGT
Right flanking sequence: Indices 160206 -- 160705
GGAGTTGAATAAACTCTTTTATGCTAGTGGAATTGGGAAGCATGATAAGTCCGTACTCCACATTC
TAGCTTCATCCTTGGTTTTCAAAGAAAGGAAACTTCAAAGACTGACAGAAGAGAAAGGTAAGATA
ATTCTTTCTGGCCTTAACTGAAAGCGGGGGAGGCCCAGGTCTACATACAGGTCTTGGATCAATAG
AATCCTCCAATTGCTAGGGAAAGAATATCGGGATTAGTCTCCTTGCCATTGCTACTGTCTTTGAA
AGTCTAGCTATCCTCTCCTTGTCATGCTTAGTTATTCTGCATTGCTCCTTCTTCTGATCTTGCTT
TCTTGCCTTATAGAACTGACCTTTGTCCCCTCCTTCCGGTTTTAACTCACTTAAAGTCCATTCCT
TGCTCTTGCCTAGTTCTAGGCTTAGACGAAAGAGCTCATTCATAGATTCCATCTTTCTAGCATTT
CATGTCTTTCTTCCTTCAACTCTAATTCATGCCATGAATTGTTAA
Found at i:188196 original size:12 final size:12
Alignment explanation
Indices: 188179--188208 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
188169 GGAGAGGCAT
*
188179 CTGACTTTCTTA
1 CTGACTTTCCTA
188191 CTGACTTTCCTA
1 CTGACTTTCCTA
188203 CTGACT
1 CTGACT
188209 GAATCACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.10, T:0.43
Consensus pattern (12 bp):
CTGACTTTCCTA
Left flanking sequence: Indices 187679 -- 188178
TACCGCTCTCTACTATAAGAAAATCCAAGAAAGAGAGTCGCTCCATAATAAATAACTGCCATGAA
TTACACACACGCAAGTAGTGGCTCGGCTAGAGGAAGAAGCCGGAGCCTATGCACTACCGAAGAAT
GGACCTGATAGAATCAATCGATTGCATAAGATATACCAAAACCACTTACTGGTCTTGCATAAAGA
AAAAAAGAAGTCAAGTAGACTCGGAAAGAAAAGAGATAGTGAAACCCTCTCCCGCCTTTTCTATC
TATCCTTAGAAGTAGGACGAGTGTCCTACCTAATTGTTAGATTAGAATAATGGAGAAGGGAGAGG
TCTTCAAAAAACCCTATACTCCCACTTTCCTTTCTTTGAGATTTCCAAAAGGTGAGATTTCGCAA
CAAAAATTGGGTGGGCCCCATAAAGAAAGAGTGAGCGCTCACTCTTTCTTTATTTTATGGGGAGA
ACCGCATCTATTCAAAGTAAATGTTTCGGCCTGCAGGAGAGGCAT
Right flanking sequence: Indices 188209 -- 188708
GAATCACTTGAATCAGTTGAAGGAGGTTTCTACAGGAAGAGTTGCGACTCCGCGTCGAGGCGGGC
GGGGGTTCATGACGAGTGGGCATGAACTGTAACCAAAGAAAAGTAAGCCAACCACGAATTCCTGA
ACCGTAAAGGGAACCGCCCTGTAAAGAGCCTCGCCTAAAGGACCAGACCGGGAGCTGAGAACAAG
ATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACTTATTCATAAGGGATAGG
ACTGGCCTTATAGAAGGTTGGGGCTTGCTCGAAATCTGTCAAATACGAGCCCTTCTTTCTCTATT
CAATCCACGGCCTACCTCGATACACCTGTGTCACAACGGCTTATTTTTTGAGTGAGGGAAGCCAG
AGCATTGGTCAAGAGAGAGAAAGAAGAAGAACTATAGATCGAGAAAGTCACATTAGCTACACCAG
ACCAGACACACTTTCTTTTTTTTACTATTTTTTGACTGACCGGAT
Found at i:206861 original size:16 final size:16
Alignment explanation
Indices: 206836--206875 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
206826 AAAGTGGAAA
*
206836 CTTTCCGCGGGATCCT
1 CTTTCTGCGGGATCCT
*
206852 CTTTCTGCGGGATGCT
1 CTTTCTGCGGGATCCT
206868 CTTT-TGCG
1 CTTTCTGCG
206876 CTACGATGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.05, C:0.30, G:0.28, T:0.38
Consensus pattern (16 bp):
CTTTCTGCGGGATCCT
Left flanking sequence: Indices 206336 -- 206835
CTACTAACCAAGCCAAGCCCAGTTCCCGCCGATAGGCGCTGGTAGCTTGCTTCCAAGCCTTGCCT
TATATGATAGTTGTGGCCATGGCCCGAAGGAGCCTTAAGCACTTGTACAATGCTTCAAGTCAAGG
CCCCCCCCCACTCGTTGCCCAGAGCCTTGACTTTCCATGTTTTTAGTCAAATGCGCGCTAGCGCG
CTACAACTAGCACTTTTTTCTCTGATAGGCTCGCTTCTTCAAGCTCCGCCCCTTATTGAAAAAAA
AAGCGCTAACGCGCCTTTACTTTTTTTTATTATATAATACCTTCTTTCTACTTCTTTCTCAAAGT
AAAGCAAGCAACCTTTCGCCTTTATTTTTTTGAGGAGATATAAAAAGAAGCAACCTTACTAAGCA
AACGTAGGCTTGGGCTCGAAAGCAAGAAGCAACGGCTTTCGCGCTTGTTGGAGCTATTAAGCATC
TTAGACTATTCCATTCCATTTTTCAGCTGGACAGAAAAGTGGAAA
Right flanking sequence: Indices 206876 -- 207375
CTACGATGGACTGTTTTACTCTTTAAGTGCGCCACTCCTTCTTTTGTCCTGTATCTGTAGCTGCT
TTTCCCGCACTCTCTTTTATCCCGCCGAAGGTCCCCCTTACGTAATAGGGGTTAAGTTAAGGGGG
GTGCACGCCGTGGTCAAATCTGCATGAAAAACCGCGGGGAATCATTAGTATTAAGTATTATGCTC
CCGCACCCCCTATCTCTTAAAGGCTCTGCGCTCCCGCATTCTGATTGATCCTGTGTAATGTTGTA
ATCCTGCTGTTCCTTTATCCCCCGCTCCGCAGCTGCTGGAGACTTAGTCATATTTTGAGCCTTTT
GCGGTACTGATTGATGTTATGGGGATTACTTGGGTTGGCCGGACTGTTTGTTTGCGAAGGCCGAA
GGACTGAAAAATGAGGTTTTTGGTGTTATTGGACAGAATTGGGTTTTCCCACGCCTCATTTTCCA
TAATATGATTATGAGCTGCAGAACGCTTGAAGCTGGAATTTGAGC
Found at i:231177 original size:18 final size:18
Alignment explanation
Indices: 231137--231179 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
231127 ACCGCCCTGC
231137 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
231156 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
231173 CATAGTC
1 CATAGTC
231180 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 230637 -- 231136
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 231180 -- 231679
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:232817 original size:21 final size:21
Alignment explanation
Indices: 232791--232834 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
232781 ATATCTAGTT
232791 TGAATTCTAAGACCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
*
232812 TGAATTCTAAGGCCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
232833 TG
1 TG
232835 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTCTAAGACCCTCTTTA
Left flanking sequence: Indices 232291 -- 232790
CCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTG
CTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATA
GGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTT
CCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTA
GTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 232835 -- 233334
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
TACTCCCTCTTTGAAGGTCGAGCCTATAGAAAAGTAAATATGGTCTAGCTAGTTATCACTTCTCC
CCCTATAGTTATAGCAGTACTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCA
TTCCTCTCCCTCTGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTC
CTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGTTTGGAA
Found at i:234439 original size:25 final size:25
Alignment explanation
Indices: 234411--234460 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
234401 AAATTGGGGT
234411 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
234436 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
234461 GGAGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AGCTCAGGAACTATAGAATCTCTCA
Left flanking sequence: Indices 233911 -- 234410
GTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGATTCATCTTGTCCTTGGCTTGTGAAGGGAATG
AGGTAGGGTAGCCAAAGCCCCCAACAAAGGGATAGGGCAATCCTTCCCAAGTAATGCATAAGCAA
GATCAGGACTAGAGGGGTGTGAAGAGTAGGGGGATCTCTTGTGCAAAGCAAAGACAGGTACGTGC
TAGCAAAGAAGGGAAGTGGCAAGGGATTTCAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGA
GTCTTCCCCTGCCTAATTGATCTAATGATAAAGAAGTAGGCTAAGTAAAATAGAAAGTGTGTGTA
AACAATAAGTAATGACTTGCTTTGTGAGAGCTCAGTTTCTAAGACGAAGGCTAAGAATTCTCTAC
TAGAGGGATTGAAAAGATCGAGGGTAATTTCTGAGTCTTGATGGACCTTTCTTATTATAGGCCAA
AGGAATAGCTAAGGACTTCTTCCCTCATTCTCATCAAATTGGGGT
Right flanking sequence: Indices 234461 -- 234960
GGAGTTGAATAAACTCTTTTATGCTAGTGGAATTGGGAAGCATGATAAGTCCGTACTCCACATTC
TAGCTTCATCCTTGGTTTTCAAAGAAAGGAAACTTCAAAGACTGACAGAAGAGAAAGGTAAGATA
ATTCTTTCTGGCCTTAACTGAAAGCGGGGGAGGCCCAGGTCTACATACAGGTCTTGGATCAATAG
AATCCTCCAATTGCTAGGGAAAGAATATCGGGATTAGTCTCCTTGCCATTGCTACTGTCTTTGAA
AGTCTAGCTATCCTCTCCTTGTCATGCTTAGTTATTCTGCATTGCTCCTTCTTCTGATCTTGCTT
TCTTGCCTTATAGAACTGACCTTTGTCCCCTCCTTCCGGTTTTAACTCACTTAAAGTCCATTCCT
TGCTCTTGCCTAGTTCTAGGCTTAGACGAAAGAGCTCATTCATAGATTCCATCTTTCTAGCATTT
CATGTCTTTCTTCCTTCAACTCTAATTCATGCCATGAATTGTTAA
Done.