Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_056367
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 551622
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:36070 original size:25 final size:25
Alignment explanation
Indices: 36036--36089 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
36026 TGCTATAACT
36036 ATCAATACAGGATTGACAACCAGTA
1 ATCAATACAGGATTGACAACCAGTA
36061 ATCAATACAGGATTGACAACCAGTA
1 ATCAATACAGGATTGACAACCAGTA
36086 ATCA
1 ATCA
36090 CAGTGCACAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.20
Consensus pattern (25 bp):
ATCAATACAGGATTGACAACCAGTA
Left flanking sequence: Indices 35536 -- 36035
AAGCAGTAGAAAAGCAAAATAGCGAAGACAGGGAAATGGGGGAAGGGGAAGTTCTTGGTTGAGTG
CGGTTGTTCTCCGATAATCCGGTTGAGAACTTTTCCAGCGATGCAGAGGAGAGATCATTTACAAA
GAAAGCTATGACTAGGCTAGGATATTCTTCATAAAGATACTCTGGACAGGATCATCGATTCGCTT
CCATGGTTGAAAGTAGTGGGACTGCCACATAATACAATGAAAATGAATTCATTCTCGGTTGAGCA
GGAGTATTCATTTAGTTCTGGAAGACTTCCCAATGATAGTTTCTTTTGTCTACGCTACTGCTGGT
TGGAGATTCGAGAAGTGAGAACTAGCGAGGAAGGGCGCTGCTGTGCTTATGCAATCAACAACTTA
TCAGTTTGGTGGATATAGGAGGAGGTGCGATGTCTAAGTGATGAAGAAAGAAAGCATACTTGTCT
ACTACTCGTAATTCATTAATATTCGAATTTCCAAGTGCTATAACT
Right flanking sequence: Indices 36090 -- 36589
CAGTGCACAGCTCTAATGCTTGGAAAGTATTTCTATTCAATAAAGGTTCTCTTTTCAAATTTCTT
ATAAGGCACCACCCTGTAAAGCATTAAGCTACTTCCTAGTAAAGCATTAAGCAAGTTCCTAAAGA
AGTAGTGGTTTATTCTTCCTAATCCTAAAGAAGAAGTGGTTTATTAAGGAAGTGAAATAGGCCAA
CTTGAATGCATATAGAGGTGCTTGTGTTGTGATCGAATTCGCATATCCCTGGATCAACGATACAT
AAGATGACTCTAACTCTTCTACGATACATAAGCTAACTCTTCTACTCTCTCCAGTATAATCTAAA
CCTTATGCGAGAATATCTATATATGTTCTATCGCCTTATGCGAGAATATCTATATATGTTCTATC
GGTAGGGTAGAATATGTTCTATCGGTAGGGTAGGGATAATCCAACATCTCATTCTAGTATTAGAT
AACACGTCCCATACAGAATTCTCACTGAAACTACCACAACAATCC
Found at i:36196 original size:23 final size:23
Alignment explanation
Indices: 36170--36215 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
36160 GCACCACCCT
*
36170 GTAAAGCATTAAGCTACTTCCTA
1 GTAAAGCATTAAGCAACTTCCTA
*
36193 GTAAAGCATTAAGCAAGTTCCTA
1 GTAAAGCATTAAGCAACTTCCTA
36216 AAGAAGTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (23 bp):
GTAAAGCATTAAGCAACTTCCTA
Left flanking sequence: Indices 35670 -- 36169
GCTATGACTAGGCTAGGATATTCTTCATAAAGATACTCTGGACAGGATCATCGATTCGCTTCCAT
GGTTGAAAGTAGTGGGACTGCCACATAATACAATGAAAATGAATTCATTCTCGGTTGAGCAGGAG
TATTCATTTAGTTCTGGAAGACTTCCCAATGATAGTTTCTTTTGTCTACGCTACTGCTGGTTGGA
GATTCGAGAAGTGAGAACTAGCGAGGAAGGGCGCTGCTGTGCTTATGCAATCAACAACTTATCAG
TTTGGTGGATATAGGAGGAGGTGCGATGTCTAAGTGATGAAGAAAGAAAGCATACTTGTCTACTA
CTCGTAATTCATTAATATTCGAATTTCCAAGTGCTATAACTATCAATACAGGATTGACAACCAGT
AATCAATACAGGATTGACAACCAGTAATCACAGTGCACAGCTCTAATGCTTGGAAAGTATTTCTA
TTCAATAAAGGTTCTCTTTTCAAATTTCTTATAAGGCACCACCCT
Right flanking sequence: Indices 36216 -- 36715
AAGAAGTAGTGGTTTATTCTTCCTAATCCTAAAGAAGAAGTGGTTTATTAAGGAAGTGAAATAGG
CCAACTTGAATGCATATAGAGGTGCTTGTGTTGTGATCGAATTCGCATATCCCTGGATCAACGAT
ACATAAGATGACTCTAACTCTTCTACGATACATAAGCTAACTCTTCTACTCTCTCCAGTATAATC
TAAACCTTATGCGAGAATATCTATATATGTTCTATCGCCTTATGCGAGAATATCTATATATGTTC
TATCGGTAGGGTAGAATATGTTCTATCGGTAGGGTAGGGATAATCCAACATCTCATTCTAGTATT
AGATAACACGTCCCATACAGAATTCTCACTGAAACTACCACAACAATCCTCACGAACATAGTACG
GATTCACACAGAACCTCACGCCCATAGTACGGATTCACACGGAATGTGGTACCGTGGCCTAATAA
AGCATGTTCTAATTGACACTTTCCTTTGATAGAAGATGCCGCAGA
Found at i:36457 original size:33 final size:33
Alignment explanation
Indices: 36415--36480 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
36405 ATAATCTAAA
36415 CCTTATGCGAGAATATCTATATATGTTCTATCG
1 CCTTATGCGAGAATATCTATATATGTTCTATCG
36448 CCTTATGCGAGAATATCTATATATGTTCTATCG
1 CCTTATGCGAGAATATCTATATATGTTCTATCG
36481 GTAGGGTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (33 bp):
CCTTATGCGAGAATATCTATATATGTTCTATCG
Left flanking sequence: Indices 35915 -- 36414
TCAACAACTTATCAGTTTGGTGGATATAGGAGGAGGTGCGATGTCTAAGTGATGAAGAAAGAAAG
CATACTTGTCTACTACTCGTAATTCATTAATATTCGAATTTCCAAGTGCTATAACTATCAATACA
GGATTGACAACCAGTAATCAATACAGGATTGACAACCAGTAATCACAGTGCACAGCTCTAATGCT
TGGAAAGTATTTCTATTCAATAAAGGTTCTCTTTTCAAATTTCTTATAAGGCACCACCCTGTAAA
GCATTAAGCTACTTCCTAGTAAAGCATTAAGCAAGTTCCTAAAGAAGTAGTGGTTTATTCTTCCT
AATCCTAAAGAAGAAGTGGTTTATTAAGGAAGTGAAATAGGCCAACTTGAATGCATATAGAGGTG
CTTGTGTTGTGATCGAATTCGCATATCCCTGGATCAACGATACATAAGATGACTCTAACTCTTCT
ACGATACATAAGCTAACTCTTCTACTCTCTCCAGTATAATCTAAA
Right flanking sequence: Indices 36481 -- 36980
GTAGGGTAGAATATGTTCTATCGGTAGGGTAGGGATAATCCAACATCTCATTCTAGTATTAGATA
ACACGTCCCATACAGAATTCTCACTGAAACTACCACAACAATCCTCACGAACATAGTACGGATTC
ACACAGAACCTCACGCCCATAGTACGGATTCACACGGAATGTGGTACCGTGGCCTAATAAAGCAT
GTTCTAATTGACACTTTCCTTTGATAGAAGATGCCGCAGAAGACTTTGAAACGGTTACAAATGGA
TTGGCTCACTCCGCTCTAGATTTGGTTATGCCAGCCATAGGCAAAAGTGAGAAACCTCACCCTCG
GGAGAAAGGAATATGCCTCCTACTAGAAGCGTTGGCCAAGGAAATACCCCGATTAGAGGTATGAG
CTGCTTTCGGCAATGGGTGCTGCGGTCAACTAGACCAAAGAGGAAGGGCTACTACCTCCAGTTAT
TAGTGGGCTTTTTTCTCTATGGGAATACTTAATCGAATTCAGCCG
Found at i:36498 original size:23 final size:23
Alignment explanation
Indices: 36468--36512 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
36458 GAATATCTAT
36468 ATATGTTCTATCGGTAGGGTAGA
1 ATATGTTCTATCGGTAGGGTAGA
36491 ATATGTTCTATCGGTAGGGTAG
1 ATATGTTCTATCGGTAGGGTAG
36513 GGATAATCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.09, G:0.31, T:0.36
Consensus pattern (23 bp):
ATATGTTCTATCGGTAGGGTAGA
Left flanking sequence: Indices 35968 -- 36467
GAAGAAAGAAAGCATACTTGTCTACTACTCGTAATTCATTAATATTCGAATTTCCAAGTGCTATA
ACTATCAATACAGGATTGACAACCAGTAATCAATACAGGATTGACAACCAGTAATCACAGTGCAC
AGCTCTAATGCTTGGAAAGTATTTCTATTCAATAAAGGTTCTCTTTTCAAATTTCTTATAAGGCA
CCACCCTGTAAAGCATTAAGCTACTTCCTAGTAAAGCATTAAGCAAGTTCCTAAAGAAGTAGTGG
TTTATTCTTCCTAATCCTAAAGAAGAAGTGGTTTATTAAGGAAGTGAAATAGGCCAACTTGAATG
CATATAGAGGTGCTTGTGTTGTGATCGAATTCGCATATCCCTGGATCAACGATACATAAGATGAC
TCTAACTCTTCTACGATACATAAGCTAACTCTTCTACTCTCTCCAGTATAATCTAAACCTTATGC
GAGAATATCTATATATGTTCTATCGCCTTATGCGAGAATATCTAT
Right flanking sequence: Indices 36513 -- 37012
GGATAATCCAACATCTCATTCTAGTATTAGATAACACGTCCCATACAGAATTCTCACTGAAACTA
CCACAACAATCCTCACGAACATAGTACGGATTCACACAGAACCTCACGCCCATAGTACGGATTCA
CACGGAATGTGGTACCGTGGCCTAATAAAGCATGTTCTAATTGACACTTTCCTTTGATAGAAGAT
GCCGCAGAAGACTTTGAAACGGTTACAAATGGATTGGCTCACTCCGCTCTAGATTTGGTTATGCC
AGCCATAGGCAAAAGTGAGAAACCTCACCCTCGGGAGAAAGGAATATGCCTCCTACTAGAAGCGT
TGGCCAAGGAAATACCCCGATTAGAGGTATGAGCTGCTTTCGGCAATGGGTGCTGCGGTCAACTA
GACCAAAGAGGAAGGGCTACTACCTCCAGTTATTAGTGGGCTTTTTTCTCTATGGGAATACTTAA
TCGAATTCAGCCGTTTTTCCGAAGAAAGAAGACTCCTCTCTATGG
Found at i:56850 original size:31 final size:31
Alignment explanation
Indices: 56815--56876 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
56805 ACCACGGAAC
56815 TGTTGGGCAAATAAGAAGATAAGTAAGCATG
1 TGTTGGGCAAATAAGAAGATAAGTAAGCATG
*
56846 TGTTGGGCTAATAAGAAGATAAGTAAGCATG
1 TGTTGGGCAAATAAGAAGATAAGTAAGCATG
56877 CATGGTCCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.06, G:0.29, T:0.24
Consensus pattern (31 bp):
TGTTGGGCAAATAAGAAGATAAGTAAGCATG
Left flanking sequence: Indices 56315 -- 56814
AGAAGGGTGTGATACCACCACCTATCAGGCCCGACGAGCGGTCCACGGAGCTGCATCCCTACTCA
CCCGGTCTATGCACATCGCTCTTTCCAGGAGGTTGGCCGCCTATCCTAGATCTTCCCATTTCCAA
GAAGATCCCTTGTTCGATCTGGTTTAGTATCAAGGTTCTTCTTTTTCTGTTTCTATATATATGGG
TCCGTGCTGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTGGCCGGAAAGTGTTCTTG
CCTCTATCATTAGCTCGGGTAGTCCCCGTTTCAGGTGTTTCAGTCACCTTTCGATGGCTCCCTTA
ATGTATGTGCCAGGAAGTTTCTTCTGAAGGGGGCTACTCCCCGAAAATGCCCCGCCCCTTGTTCG
TTTGTCGTTGGGGATTCATTGCTCGTTCTGCGGTTATTAGTCACGTAGCCAGCCTAATTTCTAGA
ATAGGGCTTCACTCGAGCACTGAAAGAAAGGGCAGACCACGGAAC
Right flanking sequence: Indices 56877 -- 57376
CATGGTCCTGTCCCTACCTTGGATTCCGTCTAAGGCCTAACTAAGATAGGAGGAAGGTTCGAGAT
ACGTGTTCTTGCCAGGTGGGTAAGGTTACGTAGATCGAAGGAGGTTGAGAAATAGGTAAAAGAAA
AACAAGCATGAGAATAATGTCATAAGTCAAGAGAAAATGCATTCTATTATATACCAACTATTTGA
CTTCTCGAGGAAGATAGCATATATGTTCGATATATACAATTGATAAGCTCATTCTGGATAAAGTC
ATTGTGTGTGAGATATCTTTTCCCGGTATAGTATAACTTGCCTGATAAGGAATTCCTAAAGGTTA
CGTGGTAGGTGAGGTAGTTGGTGTGCCAGTAGATGGAAAAGGGTGGGTTTAATAGAATAGAAAAG
AGAACCAAAAGAGAAAAGAATCGAAAGAGAACCAAAACAAAAGAGTAATGTGATCTATCCCTCTG
TCTCATTTGAGTGGCTTCTTTTCTACTTATCTTATGACTCTCCTT
Found at i:83577 original size:34 final size:34
Alignment explanation
Indices: 83534--83634 Score: 184
Period size: 34 Copynumber: 3.0 Consensus size: 34
83524 AGCTTTCATC
*
83534 AACCAGAAGGAAGTAAAGCATTCAATTCACTAAG
1 AACCAGAAGGAAGTAAAGCTTTCAATTCACTAAG
83568 AACCAGAAGGAAGTAAAGCTTTCAATTCACTAAG
1 AACCAGAAGGAAGTAAAGCTTTCAATTCACTAAG
*
83602 AACCAGAAGCAAGTAAAGCTTTCAATTCACTAA
1 AACCAGAAGGAAGTAAAGCTTTCAATTCACTAA
83635 ACCCTCTACT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.46, C:0.19, G:0.16, T:0.20
Consensus pattern (34 bp):
AACCAGAAGGAAGTAAAGCTTTCAATTCACTAAG
Left flanking sequence: Indices 83034 -- 83533
AGTGAGATGCTTTCGAGTCTAAAGAATATTTTCATTCAGAATCCTCTATTAGCACAAGAACTTGG
TATTGACGAGTCATTGGAGACAGATCACCCGTGGCCTGAGTCAATGTTGGACATGGCGAAATTTG
CTATTTGTTTATCAAATATCCTTATGACTGAGACCGTCAAGCCTCAAGGAGTGTACAATTTTGAA
GAGAAGTAATCCTGTGCTGTGAGAGGGAATAGAGCATAGCGAGCGGGTTTTGATAAAACGAGTAT
TTCACTCTCATTATTACTAGTATTTCACTCTCATTGTCTTTGCTGAGAATAAGAAGGATAGGGGA
AAGCGGGTAAGGAGGCTGGTTAAGTATTACTCGTTGGATAGCAGTTTAGGAAGAAGACTCGGATT
ATGGCCCAAGCGTGAGCGAGGAAGTAAGAAGCTAGCAAGCCCATTATAAGATTATAAGTAAGAAA
GTAAGATGGTAGCAAGTCAAACCAGCTAAGGATGTAGCTTTCATC
Right flanking sequence: Indices 83635 -- 84134
ACCCTCTACTCTAGTATTTAGCTTAGGAGGGGAAGTATTTAGCTTAGGAGGGGAACCTCGTAGAG
CAAGCCTGGTGTTGTAAATGAATAAAATGTATGAAATCAATGAATTTGTTGAAATGAAGTAGTTG
TTTATTTAAAAGCAAGGAAAGATACCAGTTAAGGAGCAAGGAAAGATACCAGTTAAGGAATAGAC
CATAGCGGGTTGCTCGGGGAAGAGTGACGAAACACTAGCCCTCATTTCGCAGTAGGTTAACCCTC
ACTTTGGAATGTATTCTTCAATCCCCGAAGTGCGAGCTCGGATCCAGAGATGGAAGCAGTTATGA
AATGAAAACAAGGAGAACAAGAAGACAAGAAAAAGAATAAGATAGGCGAGGAATTTCCTTCAATC
GGTTAGAAAGCAGTTAAGGAATAGAGCATAGCGAGTTGCTCGGGGAAGAGGATCTTAATGAGAAA
AGAAGAAAACAGCAGCCAGAGCGGATATGGGGTTCTTATCTTAGA
Found at i:83673 original size:21 final size:21
Alignment explanation
Indices: 83647--83689 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
83637 CCTCTACTCT
83647 AGTATTTAGCTTAGGAGGGGA
1 AGTATTTAGCTTAGGAGGGGA
83668 AGTATTTAGCTTAGGAGGGGA
1 AGTATTTAGCTTAGGAGGGGA
83689 A
1 A
83690 CCTCGTAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.05, G:0.37, T:0.28
Consensus pattern (21 bp):
AGTATTTAGCTTAGGAGGGGA
Left flanking sequence: Indices 83147 -- 83646
GGACATGGCGAAATTTGCTATTTGTTTATCAAATATCCTTATGACTGAGACCGTCAAGCCTCAAG
GAGTGTACAATTTTGAAGAGAAGTAATCCTGTGCTGTGAGAGGGAATAGAGCATAGCGAGCGGGT
TTTGATAAAACGAGTATTTCACTCTCATTATTACTAGTATTTCACTCTCATTGTCTTTGCTGAGA
ATAAGAAGGATAGGGGAAAGCGGGTAAGGAGGCTGGTTAAGTATTACTCGTTGGATAGCAGTTTA
GGAAGAAGACTCGGATTATGGCCCAAGCGTGAGCGAGGAAGTAAGAAGCTAGCAAGCCCATTATA
AGATTATAAGTAAGAAAGTAAGATGGTAGCAAGTCAAACCAGCTAAGGATGTAGCTTTCATCAAC
CAGAAGGAAGTAAAGCATTCAATTCACTAAGAACCAGAAGGAAGTAAAGCTTTCAATTCACTAAG
AACCAGAAGCAAGTAAAGCTTTCAATTCACTAAACCCTCTACTCT
Right flanking sequence: Indices 83690 -- 84189
CCTCGTAGAGCAAGCCTGGTGTTGTAAATGAATAAAATGTATGAAATCAATGAATTTGTTGAAAT
GAAGTAGTTGTTTATTTAAAAGCAAGGAAAGATACCAGTTAAGGAGCAAGGAAAGATACCAGTTA
AGGAATAGACCATAGCGGGTTGCTCGGGGAAGAGTGACGAAACACTAGCCCTCATTTCGCAGTAG
GTTAACCCTCACTTTGGAATGTATTCTTCAATCCCCGAAGTGCGAGCTCGGATCCAGAGATGGAA
GCAGTTATGAAATGAAAACAAGGAGAACAAGAAGACAAGAAAAAGAATAAGATAGGCGAGGAATT
TCCTTCAATCGGTTAGAAAGCAGTTAAGGAATAGAGCATAGCGAGTTGCTCGGGGAAGAGGATCT
TAATGAGAAAAGAAGAAAACAGCAGCCAGAGCGGATATGGGGTTCTTATCTTAGAAAAGCACTAG
CCCCGAGTGAGGATGTCATGTAGCATCAACTAATTGTAAAATAGG
Found at i:83802 original size:24 final size:24
Alignment explanation
Indices: 83775--83823 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
83765 TTTATTTAAA
83775 AGCAAGGAAAGATACCAGTTAAGG
1 AGCAAGGAAAGATACCAGTTAAGG
83799 AGCAAGGAAAGATACCAGTTAAGG
1 AGCAAGGAAAGATACCAGTTAAGG
83823 A
1 A
83824 ATAGACCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.29, T:0.12
Consensus pattern (24 bp):
AGCAAGGAAAGATACCAGTTAAGG
Left flanking sequence: Indices 83275 -- 83774
GTTTTGATAAAACGAGTATTTCACTCTCATTATTACTAGTATTTCACTCTCATTGTCTTTGCTGA
GAATAAGAAGGATAGGGGAAAGCGGGTAAGGAGGCTGGTTAAGTATTACTCGTTGGATAGCAGTT
TAGGAAGAAGACTCGGATTATGGCCCAAGCGTGAGCGAGGAAGTAAGAAGCTAGCAAGCCCATTA
TAAGATTATAAGTAAGAAAGTAAGATGGTAGCAAGTCAAACCAGCTAAGGATGTAGCTTTCATCA
ACCAGAAGGAAGTAAAGCATTCAATTCACTAAGAACCAGAAGGAAGTAAAGCTTTCAATTCACTA
AGAACCAGAAGCAAGTAAAGCTTTCAATTCACTAAACCCTCTACTCTAGTATTTAGCTTAGGAGG
GGAAGTATTTAGCTTAGGAGGGGAACCTCGTAGAGCAAGCCTGGTGTTGTAAATGAATAAAATGT
ATGAAATCAATGAATTTGTTGAAATGAAGTAGTTGTTTATTTAAA
Right flanking sequence: Indices 83824 -- 84323
ATAGACCATAGCGGGTTGCTCGGGGAAGAGTGACGAAACACTAGCCCTCATTTCGCAGTAGGTTA
ACCCTCACTTTGGAATGTATTCTTCAATCCCCGAAGTGCGAGCTCGGATCCAGAGATGGAAGCAG
TTATGAAATGAAAACAAGGAGAACAAGAAGACAAGAAAAAGAATAAGATAGGCGAGGAATTTCCT
TCAATCGGTTAGAAAGCAGTTAAGGAATAGAGCATAGCGAGTTGCTCGGGGAAGAGGATCTTAAT
GAGAAAAGAAGAAAACAGCAGCCAGAGCGGATATGGGGTTCTTATCTTAGAAAAGCACTAGCCCC
GAGTGAGGATGTCATGTAGCATCAACTAATTGTAAAATAGGAATGAATTGGTAATTCTAAAATAG
GAATTGGCTTGGCTGGCGGTATGATACGAAGTACGAGCTGGTTGAATAGCAATAACCGTTCTGTT
GTACTAAGAAGCACTGGTTTGAGGAAACGGGAAGAATAGATCGAA
Found at i:90260 original size:22 final size:24
Alignment explanation
Indices: 90215--90261 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
90205 GAAGGTGAGT
90215 CCGATCAATCATGGGTTGATGAAATA
1 CCGATCAATCA-GGGTTGA-GAAATA
90241 CCGATCAATC-GGGTTG-GAAAT
1 CCGATCAATCAGGGTTGAGAAAT
90262 CGTCATCAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 5 0.24
24 6 0.29
26 10 0.48
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (24 bp):
CCGATCAATCAGGGTTGAGAAATA
Left flanking sequence: Indices 89715 -- 90214
GCTCCAGGGTAGGGAAAGAAAAGCACTGGTTTCCTGTAGAGGAAGACTCTCTTCGGGGAAGAGAG
GGTTTCGAGGACAAAAGGAAAGAGACATGAATAAATCCCAACTTAAAGTAGTGGAATTGCCAAGC
CTATCGGGTAAGCGAACTGTCTAAGACTGGCGAAGGGAAAGGACTGGTAGGAAACCCAAACTCGG
ATCTCGGATAGTTGGGGAAAGGAATAGGTGGAAAGAAAAAGTTGGATACTCGCTAAAGCTCGGAG
AGAAAGCATGAGGCATAGGAATGTAGTTCCACTTATTATACATCAATTCTCGTCCATTCTCGACT
TCCAAGACACTGTCCTCGCTCTAGTCCTAGCTGCTCTAGCCAGGGCTATTCCGTACCATTTCGCT
TGGTTGTAGCGCCGCCTGTGGTACTGAAGCATGAAGGCAACTACTATGACCAATTCCGTGCTCTA
TTTTGTACTATGACCGCTCTATTTGGTGTTGAGAGGAAGGTGAGT
Right flanking sequence: Indices 90262 -- 90761
CGTCATCAGGACGGTTTCGAGTGAGATGCGAAGGAGTGTTGTACACCGCTGCGCGCCTGGTTAGG
AATTGCTTTCACAAAGATGTACTGGAGGATTGTTGCCAAAGCAGCAAGTAGAAAAGGTTCGTCAG
AAAGCTTGTCCTTCGGCCCTTATCTTACTCTTTTGAAAAACTGCTTGGTGACACTGGTGCGAAGC
CGATAGTAAAAAGACCAACTTTACGTAACGTAATTGCTCAGTGATCATAGGTTTAAGGCAAAGAA
GACGGTACTCCTTTTAATAGCGCACCTTTCGTTTGCAACGATATTCTCCCATCACTCTAGTTTCA
AGCAGTTGTATAGGTAAACATGCTAGTGACAAGATAAGTAAGGGCAATGGTCACCTCATCTTCTT
TTCCCTATGACTAGGCTTCGCCGTTTGAGAATACTCTATCAACGAAAGAACTCTTGGTAACTCCA
AAATAGGATGGCCATTCTGCGGGTTAACCTTATAGGGAAACAACC
Found at i:98709 original size:23 final size:23
Alignment explanation
Indices: 98681--98726 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
98671 ATCTTTCTAT
98681 TATATATATAAATATGAGGAGTC
1 TATATATATAAATATGAGGAGTC
*
98704 TATATATATAAATATGATGAGTC
1 TATATATATAAATATGAGGAGTC
98727 ATGATCTGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.37
Consensus pattern (23 bp):
TATATATATAAATATGAGGAGTC
Left flanking sequence: Indices 98181 -- 98680
CAAAAAGTAACATACACGACAATTCTATAATTCTTCGTCCTTTTTCTTGAGATAACGCGGAAAAG
TATCTTTTTGCTATGGCGTATGATTTGATACTTGCCAACACGGAATAGAGACTCGCACTTGAGAA
CTTTTAGGAGTGGTTCTAATGTTAGTCAGATTGACTTCTTCCTAACGCGACGAGTAGATCAGAAG
TATTTCTAGGATTGTAAGGGTGATACCTGGAGAGACAACATAGATTTTGAGTACTCTATCTTAGT
ATTAAGAGATGGAAGAGAAGGAGCAAGGGAGCCTAGGATTAGGTGGTGGAATTGGAAAGGGGATA
AGCAAGTTATGTTTAAAGATAAAATAATTAATGAGACGGAGTGGAAGTTAGGTGAGGATGCTAAC
TCAATGTAGAATGAGATGGCTCATTGTATCACGTCAGTGGCAAAAGAAGTTTTAGGTGAATCGAG
AGGAAACAGACTGACCGAACAAAAAGAAACCTTTCATCTTTCTAT
Right flanking sequence: Indices 98727 -- 99226
ATGATCTGGCCTGGTCGACCCAATCATGACTATGGGACCTTTTCTCGATAAATGCTTTTTTTCTC
GTTTAGTACTTTACTTGTCTCTCTCTTTTTTCAGATCAGTTGGAATGTATCATTCTTTCCTGATT
CTCTAAGAGGGTCAGCCTAAACAAGGGATTGTGACCCATGTGGTTAATGTCTCTCTGAGAGTTCC
GTTTATTAAGTAGTACGGGTTTCTCAAGTGAGTATAACAGAGTCAATTGGTAGGAGTGTCAACTG
AGTAGTTTAGGTTCCAGTGTCCTCAATCCTAATCATATCGCCTTTACCGTGGACTGAGAAGTATT
GAGTCGTAATAGCCTCTAATATTCCCATCCGGAAACAGGTTGATTTGAGGATTCCCCTATATTAA
AAACGACTACTCATGGATTTCCCAACAAGCAACTCCGTGAGCACGCGCCTCTTCTCACTAGGTGA
ATAGATTCCTTTGATCCGGTAATTCGATTATCAATTCCTAGGTGC
Found at i:131780 original size:18 final size:18
Alignment explanation
Indices: 131757--131792 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
131747 CTCGGTAAAT
131757 ATAGCGAAAAGTCCAGAG
1 ATAGCGAAAAGTCCAGAG
131775 ATAGCGAAAAGTCCAGAG
1 ATAGCGAAAAGTCCAGAG
131793 TTCCTCATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.28, T:0.11
Consensus pattern (18 bp):
ATAGCGAAAAGTCCAGAG
Left flanking sequence: Indices 131257 -- 131756
CTATCCACCAGGGCTTCCAAAGCTAGGCTATCCTCGGCAAAGAACCAAAGGAATTTGAAAATCCT
TGAATCGATAGACTTTCGTACAACGGCACAGCTCCTCAGCAAATCTAATCCCAATACGAATTCCA
GAATAATGCTATAACGGAGCCATCCTTTCCAATCGAATCTGTATCCTCAGTTTCGATGAAAGCTA
TCCCCACACCAGCCTCAAGAAAAATCAGAAGCTATTCTATTAGAGTATGATAAGGAAAGTCAAGC
GGACCCGTACCCAGTAGTAGATTTCCTTGAATGAGGTTTCTCTGATCTGTTGACGGCATTCTTGA
AGTGAAGCTTTCTTTCTAACTAAGAAAAAGAACAAAAATAGATAATAAATGGTATGGTGAGAGTA
GTCAAACGTTTGCTTCTTGTCCCAAATGCACAACGTTTGCTGATACAACGTACAAGATAACAGCC
ATGCACGAAAGGTAAAGATTAGGAGGGGTGGAAGCCTCGGTAAAT
Right flanking sequence: Indices 131793 -- 132292
TTCCTCATGAAGGTTTTCAAGTTTAAACAATGGTTTTCTAAAAAGAATAATAACTAGTCATTAAT
GTATCAAATCCGAATAGGTAGATCAACCACTGCCCCCTCGGTTAGACATTGATATTAGCATTGGC
CCTTACTACAAAGCCTATTTATTATTTGGATGTTACCTATTAGCTGCTAAGCACAAAATACGTTC
GAGATGAAAGTGCATTGTTTTAATTGCTACTATACACACCAACCAGATCTCACTTCTCAATGTTC
TCATGCATGATGTATTCCCCCGCACCAAAGCCGGCTTGAGTAGAACCTTAGACGGTCTTAGCACT
GTAAGGTAAGCAGGTGCTTTTGCGCTTAGCCGTGCTCTTGTGAGTGACACGCTACGCCCCACCCA
ATGTTCCAGAATTCCTGTTCAATCAGTCAAGACTTCCTTACACTCTCGTTTTAGCTTTCTTACAC
GTCGTCTATTGAATCAGAAATGAATATTATTTCTTATAAAGATGA
Found at i:203450 original size:23 final size:23
Alignment explanation
Indices: 203424--203469 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
203414 GAACTACCTT
203424 AGATCCGACTAATTCCCGACTAG
1 AGATCCGACTAATTCCCGACTAG
203447 AGATCCGACTAATTCCCGACTAG
1 AGATCCGACTAATTCCCGACTAG
203470 TTCCTTCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.22
Consensus pattern (23 bp):
AGATCCGACTAATTCCCGACTAG
Left flanking sequence: Indices 202924 -- 203423
TACCCCTAAGTTCATTTCCAATTCCCACATACAGTCTAGTTCCTTTCATGAGTAGTCCATCTTTT
TCTTGCCATTCAGCCGGCTTGTCCTTCACTTTCTCAAGCTCCTCTTTATTTCACTTTCAAGGCCA
TTTCGTAGCTATTTATAACCTCCTGAACCCACTCGGGCACCACTATGCTTATGGCCGCGCATGTA
TCCACTTCTTTAGGCCTAACCTTTCTCGATAAAGAATCTGCCACTTTGTTTGCGGCTCCTTTCTT
GTACTCTATCACTCCAGTCCAATAAACTTGGTTAGGGCTTTGAATTGTAAATCTTTGCTCAAGGA
GGTATTTTATACTTTGGTGATCGGTCTTGATGACAAACGGCCTAAGTTGCAAGTAATGTCTCCTT
TTTGTAATATCCATGAGTATGGCCATTAGCTCTTTCTCGTACACTGACAAGCCCAAACTCCTCTC
TTCCCAGGAAAGAACTAACTTATCTGCCAAAGCAAGAACTACCTT
Right flanking sequence: Indices 203470 -- 203969
TTCCTTCGATCTAGCTGGAACTCGTAATTCCTATCTTGAACAAGACCAGCTTTAAATGCATTTTT
CACAAGGAACAACTTGAACAATCCATGATAGGAGAACTGATTGAACAAGGAAGCAAGCAAAGAAG
AAGGAAAGTATTGGAATTCTCTTGTTGCCGAAGCGTAGGCCAGCTTTTTGGAGTGAAAATAAGGA
GTGCCCGGCCATCTAAAGTGCCAGTCTAAGTTCCCCTCCAGGCTGCAGGGTAAAGGGCAGACACA
GGTTCAGAGCGAGGGGAAAGGATCAAGGGATACCCAAGCCATACCAATCATTACCCGGTATGGAG
GGATAAAGCATCAAATTGTATTTTCCTTACTCCTGTGGGCCTATGATTTCTTTTCTTCGTCATAA
ACGATATCCGCTGACTCAAGCATCTTCCCCCAAGCCCTTGCCATTAAGCTAATATCTCCCTTGCC
ATTAATTCAACAAGGCTTCCGAGAAAGATCAAGACCAAAATGAAG
Found at i:206143 original size:20 final size:20
Alignment explanation
Indices: 206118--206157 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
206108 ACAAACTCAA
*
206118 ACCGTTAAATAGTTTACTTC
1 ACCGTTAAATAGTTGACTTC
206138 ACCGTTAAATAGTTGACTTC
1 ACCGTTAAATAGTTGACTTC
206158 TTTGATTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (20 bp):
ACCGTTAAATAGTTGACTTC
Left flanking sequence: Indices 205618 -- 206117
AAGAACGAATCGGACCTGCCAATAAGAATAAGACATAGATTTTTCAGAATAGTATCTACTTGCCT
TTCCTTTTTATAAATATTGATACTTGAACATCAAATAATTAAGATTATAGTATCCGACCTTGGAT
TTCCCAGATAATCAACACGGGTGCTTCATAGCGATGGAGTTCGTGATACCCATTAAGGGCATCCC
TCACTCTATTCTTTCTGTTCTCGGATTGCTTTATAGAGAATTGTGAATAGAAAGAGAAGGCAATT
CAAACCTAATGGCCAAACATTACGAATCCAAGACAGAAAGAGAAGGCATGGGCTGGAATGAGTTC
TTGAACGAAGGATAGACCAGGAAGGAGAGTGGAAATAGCTCAAACAGTGGATTGATGTTCCAAGA
ACTAGGTGTGTTATCGAAAAGTAATCTCTGTCTGGGTTAGACCTTTTTGGAGTAATAGAATGTAT
AGTCGAGGAATACAAAACAGAAGTGGTTCAAGCTGACAAACTCAA
Right flanking sequence: Indices 206158 -- 206657
TTTGATTAAGGAAAGACGATGTCAACTGTTAGCTATGAATGTTTAAGGTAGGAAGACTAGTATCC
GTTCCTGATACCCAGCCAGGGCATCACTCACTGAAAAGAGAAGAAAGCTGGCCTACCTGAGAAAT
CAACAAGAGAATTGAAAAGTCGGTCAAGGAAGCTCTACTATGATAGTCTAGTTAATCCTACTATT
CGCATAAATCAACTGACTTACTTGAGGAATAAATCAACTGACTTAGTTTCAAACAATTCCTACTA
ACAAGGAGAACCCCTTTCCCAAAGGAGAGTTGGGAGCCGTTCTTGGGATTTCTAACGAGTTCCGT
TCCCTCCTAGATTTCGTAGAATTCCTGCCATAGAAACCATGCTTAGGACGTAATCTGGATTGGAT
TGATCGAAAGGGCGAATGAAAACGCCATCAGGGCTCATTGGTTTACGGGATTCGCCTACTGCCTA
TTAAGAACCTTACGTGAACCTTATTGATTTTTCTTTGTTGTTCAA
Found at i:206723 original size:23 final size:23
Alignment explanation
Indices: 206693--206738 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
206683 ATCGAAGGAA
206693 CTAGTCGGGAATTAGTCGGATCT
1 CTAGTCGGGAATTAGTCGGATCT
206716 CTAGTCGGGAATTAGTCGGATCT
1 CTAGTCGGGAATTAGTCGGATCT
206739 AAGGTAGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (23 bp):
CTAGTCGGGAATTAGTCGGATCT
Left flanking sequence: Indices 206193 -- 206692
TGAATGTTTAAGGTAGGAAGACTAGTATCCGTTCCTGATACCCAGCCAGGGCATCACTCACTGAA
AAGAGAAGAAAGCTGGCCTACCTGAGAAATCAACAAGAGAATTGAAAAGTCGGTCAAGGAAGCTC
TACTATGATAGTCTAGTTAATCCTACTATTCGCATAAATCAACTGACTTACTTGAGGAATAAATC
AACTGACTTAGTTTCAAACAATTCCTACTAACAAGGAGAACCCCTTTCCCAAAGGAGAGTTGGGA
GCCGTTCTTGGGATTTCTAACGAGTTCCGTTCCCTCCTAGATTTCGTAGAATTCCTGCCATAGAA
ACCATGCTTAGGACGTAATCTGGATTGGATTGATCGAAAGGGCGAATGAAAACGCCATCAGGGCT
CATTGGTTTACGGGATTCGCCTACTGCCTATTAAGAACCTTACGTGAACCTTATTGATTTTTCTT
TGTTGTTCAAGATAGGAATTACGAGTTCCAGCTAGATCGAAGGAA
Right flanking sequence: Indices 206739 -- 207238
AAGGTAGTTCTTGCTTTGGCAGATAAGTTAGTTCTTTCCTGGGAAGAGAGGAGTTTGGGCTTGTC
AGTGTACGAGAAAGAGCTAATGGCCATACTCATGGATATTACAAAAAGGAGACATTACTTGCAAC
TTAGGCCGTTTGTCATCAAGACCGATCACCAAAGTATAAAATACCTCCTTGAGCAAAGATTTACA
ATTCAAAGCCCTAACCAAGTTTATTGGACTGGAGTGATAGAGTACAAGAAAGGAGCCGCAAACAA
AGTGGCAGATTCTTTATCGAGAAAGGTTAGGCCTAAAGAAGTGGATACATGCGCGGCCATAAGCA
TAGTGGTGCCCGAGTGGGTTCAGGAGGTTATAAATAGCTACGAAATGGCCTTGAAAGTGAAATAA
AGAGGAGCTTGAGAAAGTGAAGGACAAGCCGGCTGAATGGCAAGAAAAAGATGGACTACTCATGA
AAGGAACTAGACTGTATGTGGGAATTGGAAATGAACTTAGGGGTA
Found at i:242137 original size:17 final size:17
Alignment explanation
Indices: 242115--242148 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
242105 CAGTAACTAT
242115 AGAGGACTTTATTCTTA
1 AGAGGACTTTATTCTTA
242132 AGAGGACTTTATTCTTA
1 AGAGGACTTTATTCTTA
242149 TTCTAAATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (17 bp):
AGAGGACTTTATTCTTA
Left flanking sequence: Indices 241615 -- 242114
TTAGAGTACGTAAAAAAGATGAGTGAGGCAAACTTCTTCCCGCGCTTTCTATCTCTATACACACG
TGAAAAGGAAGCAGATGCACGGGGTACCAACAATAGAAAGTCGTATCCTTTCTATTTTGCTTCGC
ACCCTTTTTCTTTTCTTCTTTTCTTTGTCCTTGGCAAAGGCAACTCACAATTTTTTTATTGGCAA
GGAAAAATAACTAGATTTCCAACTGCAATCCTTGACGGTTTTCCTATTTCTATTGACACTTGGCG
ACCAAGCTCAAGAAGAAGCAATCAAAGGATGTCTATCTTCGTTCTCGAGGGCGGAGCGGTTGAAG
AACCATGTCGAACTCGGCTAACCCTATCTTCCGAGAGCCTCTTCTCTCTTTTAGTTAGCCTTACT
TATTTATTCCAATTCCTAATCTATATCATAAAGCAAAGCCCTTTTTGCGCCGCAAGGCTATCTCC
TACGTATCAAATTATCACTTCTAGGAGTAATATGCCAGTAACTAT
Right flanking sequence: Indices 242149 -- 242648
TTCTAAATAGGCATAGGTCCGGTGCAAGTGTCCTTATATACATGTATATGTCGGTTAAACACTGC
CCAAATACAGGTCAAAGCAAAGTAGGTTTACAGCTAAGAGTTCACTTTTCTCAAGCATCTAACTA
AGCTCCAGCAATTGCTATTGGAAGCCTCTTGTTCTCCAGCTCATGCATCCAGTAAATGCCCTGCT
CATGTCGTAGGTTCAAATCCTATTGGACGCAATCTTTTTTCTATCTATTCTTTAAATAACTATAC
TCAAAACTAAAAAATCAAATTTGCATGATTCAAATGAAAAATCTTTCTCAACGATTCCTCTTCCA
CTGGGAGAGGGTTTGATTGGGATTGTTTAAGCAATTCCCGTAATCGTCGACCCCTTGCCAATTGA
TTCTGACTTGTTTTATCCAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAATTCTGCGAATTGAGC
TAGTTCCAATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAAT
Found at i:247031 original size:21 final size:21
Alignment explanation
Indices: 247005--247067 Score: 126
Period size: 21 Copynumber: 3.0 Consensus size: 21
246995 AGGTAGTTCG
247005 ATCCTTTTGATTCTTATCTTC
1 ATCCTTTTGATTCTTATCTTC
247026 ATCCTTTTGATTCTTATCTTC
1 ATCCTTTTGATTCTTATCTTC
247047 ATCCTTTTGATTCTTATCTTC
1 ATCCTTTTGATTCTTATCTTC
247068 CTAGTAAACG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.14, C:0.24, G:0.05, T:0.57
Consensus pattern (21 bp):
ATCCTTTTGATTCTTATCTTC
Left flanking sequence: Indices 246505 -- 247004
CCATGTTTCCCGAGAGAGACTGCCTTCTCTCAGGCCAGCAGTCTTATACTTATAGTCGACTGCTC
TATGACGATCTGACCTCTTTCCTGGGCTCTGCTCGCTCGTCTACGCTCCGACCAATTCAGTCAAA
ATCGAAAAAACGATGTTTCCTTGAAAAAGTCTAAGAAATAGTAGTAGTAGTCAAAAACTTTTTCC
ATATATTTCGATTTATAGGGATCCCTATCTTTATCTCTATCCACAGAGATACCTATCTATTCTAT
ATAGAGAGAGATTTTTCTAAAAATTGATCTAGACTATCCTCTATCCGGATAGATATGTCCCTATG
AGCGACTAGGCCGATCTTTTTTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGAGGAAGGT
TTGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACAGCT
TTTAGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAGTTCG
Right flanking sequence: Indices 247068 -- 247567
CTAGTAAACGGGGATCCGGAGCAATAGGTCGAATTTCTATATAATTTTGTTGTGTAAACAAAAGG
GCTTATTGCTCTTTTTCGGTTTTCGTTTTCCTCGAGAACTTTGAGGATCTCCTCTACCCCTTCCT
CTTCCTCCTTCCTTCTTATCAATTCCTCTTCCTCCTTCCTTCTTTTCCATTCCGCTTCCCCTATT
GTTCTTATCAATTCCTCTTCCTCCTTCCTTCTTTTCCATAAGAAGAAGTATTTGAAATGAAACAA
ATTCCTCTTCATTCTGTTGTGCTCAGCGAAGGAACTGCCTAAGCATACTTTTGCGGATCCAAACT
TCTTTGTTCTTTCTAAGTCTTCTTCTTGCATATAAGAACGCAACTCTTGCAAAAACCCGGATTTG
AGTAGTAAGCGGCATCCCCTCTGAGTTGTGAGTAAGCGGAACCATTCTGTTTTTGTTCTTCTCCA
GATTCTGACCGGTAGGAATTTGCCTATGATTTTTCCAACTGATAT
Found at i:247209 original size:13 final size:13
Alignment explanation
Indices: 247182--247237 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 13
247172 TTTGAGGATC
*
247182 TCCTCTACC-CCT
1 TCCTCTTCCTCCT
247194 TCCTCTTCCTCCT
1 TCCTCTTCCTCCT
* *
247207 TCCTTCTT-ATCAAT
1 TCC-TCTTCCTC-CT
247221 TCCTCTTCCTCCT
1 TCCTCTTCCTCCT
247234 TCCT
1 TCCT
247238 TCTTTTCCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
12 8 0.23
13 17 0.49
14 10 0.29
ACGTcount: A:0.07, C:0.48, G:0.00, T:0.45
Consensus pattern (13 bp):
TCCTCTTCCTCCT
Left flanking sequence: Indices 246682 -- 247181
TAGTCAAAAACTTTTTCCATATATTTCGATTTATAGGGATCCCTATCTTTATCTCTATCCACAGA
GATACCTATCTATTCTATATAGAGAGAGATTTTTCTAAAAATTGATCTAGACTATCCTCTATCCG
GATAGATATGTCCCTATGAGCGACTAGGCCGATCTTTTTTTATATGTTTTGGCCACGTCCGTTTC
CGCTCCGAAGAGGAAGGTTTGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGT
CCATAAGATACCACAGCTTTTAGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAGTTCGAT
CCTTTTGATTCTTATCTTCATCCTTTTGATTCTTATCTTCATCCTTTTGATTCTTATCTTCCTAG
TAAACGGGGATCCGGAGCAATAGGTCGAATTTCTATATAATTTTGTTGTGTAAACAAAAGGGCTT
ATTGCTCTTTTTCGGTTTTCGTTTTCCTCGAGAACTTTGAGGATC
Right flanking sequence: Indices 247238 -- 247737
TCTTTTCCATTCCGCTTCCCCTATTGTTCTTATCAATTCCTCTTCCTCCTTCCTTCTTTTCCATA
AGAAGAAGTATTTGAAATGAAACAAATTCCTCTTCATTCTGTTGTGCTCAGCGAAGGAACTGCCT
AAGCATACTTTTGCGGATCCAAACTTCTTTGTTCTTTCTAAGTCTTCTTCTTGCATATAAGAACG
CAACTCTTGCAAAAACCCGGATTTGAGTAGTAAGCGGCATCCCCTCTGAGTTGTGAGTAAGCGGA
ACCATTCTGTTTTTGTTCTTCTCCAGATTCTGACCGGTAGGAATTTGCCTATGATTTTTCCAACT
GATATGTCGATATAGAAAGATCTCCTTATTTCTTCACCGCGGGTTCTCGCGTCATTTTCTTTAAA
AGATATTAGATCACCATGGGAAACTTTAAAATGAGTAATGGTTACCAGTCCATTATTCAAACAAA
CCCTTCGATGACTTATCGGCTGCCTTGCTTGAGGAAGAGTGTCAC
Found at i:247223 original size:27 final size:27
Alignment explanation
Indices: 247193--247295 Score: 145
Period size: 27 Copynumber: 3.8 Consensus size: 27
247183 CCTCTACCCC
247193 TTCCTCTTCCTCCTTCCTTCTTATCAA
1 TTCCTCTTCCTCCTTCCTTCTTATCAA
* *
247220 TTCCTCTTCCTCCTTCCTTCTTTTCCA
1 TTCCTCTTCCTCCTTCCTTCTTATCAA
* **
247247 TTCCGCTTCC-CCTATTGTTCTTATCAA
1 TTCCTCTTCCTCCT-TCCTTCTTATCAA
247274 TTCCTCTTCCTCCTTCCTTCTT
1 TTCCTCTTCCTCCTTCCTTCTT
247296 TTCCATAAGA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.05
27 58 0.91
28 3 0.05
ACGTcount: A:0.08, C:0.41, G:0.02, T:0.50
Consensus pattern (27 bp):
TTCCTCTTCCTCCTTCCTTCTTATCAA
Left flanking sequence: Indices 246693 -- 247192
TTTTTCCATATATTTCGATTTATAGGGATCCCTATCTTTATCTCTATCCACAGAGATACCTATCT
ATTCTATATAGAGAGAGATTTTTCTAAAAATTGATCTAGACTATCCTCTATCCGGATAGATATGT
CCCTATGAGCGACTAGGCCGATCTTTTTTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGA
GGAAGGTTTGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATAC
CACAGCTTTTAGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAGTTCGATCCTTTTGATTC
TTATCTTCATCCTTTTGATTCTTATCTTCATCCTTTTGATTCTTATCTTCCTAGTAAACGGGGAT
CCGGAGCAATAGGTCGAATTTCTATATAATTTTGTTGTGTAAACAAAAGGGCTTATTGCTCTTTT
TCGGTTTTCGTTTTCCTCGAGAACTTTGAGGATCTCCTCTACCCC
Right flanking sequence: Indices 247296 -- 247795
TTCCATAAGAAGAAGTATTTGAAATGAAACAAATTCCTCTTCATTCTGTTGTGCTCAGCGAAGGA
ACTGCCTAAGCATACTTTTGCGGATCCAAACTTCTTTGTTCTTTCTAAGTCTTCTTCTTGCATAT
AAGAACGCAACTCTTGCAAAAACCCGGATTTGAGTAGTAAGCGGCATCCCCTCTGAGTTGTGAGT
AAGCGGAACCATTCTGTTTTTGTTCTTCTCCAGATTCTGACCGGTAGGAATTTGCCTATGATTTT
TCCAACTGATATGTCGATATAGAAAGATCTCCTTATTTCTTCACCGCGGGTTCTCGCGTCATTTT
CTTTAAAAGATATTAGATCACCATGGGAAACTTTAAAATGAGTAATGGTTACCAGTCCATTATTC
AAACAAACCCTTCGATGACTTATCGGCTGCCTTGCTTGAGGAAGAGTGTCACTAAAACGGAGACG
AACCGGAATCACGTCCGATCTTGTTTCTTGATTGAGTAAAAAAGG
Found at i:249815 original size:18 final size:18
Alignment explanation
Indices: 249794--249829 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
249784 TAATAACTAA
249794 GACTTTCTTTACTACTTT
1 GACTTTCTTTACTACTTT
249812 GACTTTCTTTACTACTTT
1 GACTTTCTTTACTACTTT
249830 ACCAACCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.06, T:0.56
Consensus pattern (18 bp):
GACTTTCTTTACTACTTT
Left flanking sequence: Indices 249294 -- 249793
GTCTAAGTTCTATTTCTTTCTTGCTTTCAATGTGTCCCTCAGTTAGTGCAGTTGCTGGCCTTTCG
CTTCTCACCTTGAGTTGACTGAGACTGAGAGTCAGGGGATGTGGCTAGCTAGTCTTTTACTAAGG
TTGATTTAAGTTTCTCTGGTTCTTGATTGAGTCTTTGTCTTGCAGTTGCAGGAGTGATGTCAAAC
CTCTTGCTTGAGTTGTCTGTATTGGAAGTCGTGTAAGCGGCTTCTTCCGAATTTGCCTCCGGGTC
TAGTACGTATGAAAAGATGTCAGCGTCGTGGCGATTGCCTTTCCTGGTGGTGAAGGATTCTATTC
CCGAGCGGCTAAGGTCCAATCCGGTATTCTATTTCGTCTGTGCGAGCATTAAAACCAACCATTGC
CGACGTCCTCATATTCTCTAATTTGGCTAATCTCCGTGCATTAGCAGGTTAAGCAAATCGATTCC
AACTCAGTGGCAGATAGGCTGCAACATTTCTTTCCTAATAACTAA
Right flanking sequence: Indices 249830 -- 250329
ACCAACCCATATCACGCTAACTGATACTGTGCCTAGTGATTGATGAAGGTCACAGAGGAGTAAGA
ATAGCAAAGCCTACAAATAATGTGATAAGAGTTCGGTTTGGCGTGGCTGGACATTTAGGATTAGC
TTACTTGGCGCTATCCACAGTTACCACCTTTTCAACCACATCATCTCTTTTACTTTCTCTCGAAG
CTTCTAGCCAGCGAAAGCCTAGTGAATCCAGAGCCATCTTCCTTCCTATTAGCTCTCTCTCAGGG
ATTCGAATGCCCATTGGCATTATTAAAAACAACCAACTTGCATATCTCGGGAACTCTTGAAACAT
AAGGAATAGGAGGATGCTTCGATTCTCTTGTTGTCGACTAAGCGGAGCGTTTACGGGGTTCTAAT
GAGACAGACGCGTATTTCACCCTTTAGATTCCCTTTTGCTCCCTCGATCAACGTTAGAATCTTTC
TCCTTACTTACGGGAAGTTGAAAGCCAGCGCACAATAGCTCCGCG
Found at i:259090 original size:14 final size:14
Alignment explanation
Indices: 259071--259098 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
259061 AACAGTGGGA
259071 TCAACTATACCTCT
1 TCAACTATACCTCT
259085 TCAACTATACCTCT
1 TCAACTATACCTCT
259099 GGTTCTTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36
Consensus pattern (14 bp):
TCAACTATACCTCT
Left flanking sequence: Indices 258571 -- 259070
GGCCAAGCATTGGAAATTGTTCGTTCATAAGAACAACCCTCCTCTAACGAATAAGAAAGAACCCT
TTTCTATCGAGTTCACCACCTGATAACTTCAAAGTTACACTTACTTGTTCGACACTGGATTTCTA
TCCCTTATAAAGGGAACATCATCTCTATAATTCTCTTTTCTTGCTAACTTCACGGAGACTGAGAT
CCATGGTAGAAACCTATTTTCCTCAAGGTTCAGCTTGATAAGCCGTAGCTTTCTATCTCGCTCTT
CTCTTCAGCATTCCATCCCTGGGGCATTTCACCTTGTTTTTCCCTTGTGAGCCGCCTATGCCACG
ATCTTTAGGCAAATTTGAATCAATCATCGCTCCAGTGAGTAACGTATTTTTTGGACTTGTAATAA
TAGCCTTGTCCAGTAGCGAAGTACTAACTTCTTTACTTTGCTTGCCCTGTCCGCCTTTCAGGAAG
CCTACTTGGCGGAAAATTCAAGTGCTGCAATGACGAACAGTGGGA
Right flanking sequence: Indices 259099 -- 259598
GGTTCTTCTGGCATATTTGATGAGACCCGTTCTTTTTATGTATGCAAATTCCTTGATTGCGTAGC
AGTTATGGATATTTCCCCAATCTTTCTTGCTTATGAAACATCTTTGTAGATTGGAAGAGTTCCAC
TAGGACAGCAAATCAGCTACTTCGAAAAGACCAGAGCTCAGATACTGGAGAACATGGAGGAGGAA
GCAGCAAGTGATTTCTTCAAGACGGCGCTCTTCATTGTAGCTGCAGGATCCAATTTTGGAGTATC
TTTCACCTTCAGTACCGTTCTTTGGACGAGAGAAGCCTTATCCTTCATACTTTCTGGACGTGTTG
GTTTCCAATCTGACATTTTATCAGAAGGTTCTGCCAATTTATCCCTACTGTAGTTTTGTGTCGCT
TGCTCTTGTTTGCTGCTGACCTCTATTTTCTTTCCCTCGATTAAGAGGCTAAATGAACTGGCGAA
AGTTTGTTGTGTCCGACGATATATCGGTTGTATACCGTACGTTCG
Found at i:259789 original size:19 final size:19
Alignment explanation
Indices: 259757--259794 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
259747 TTTGGCAGCG
*
259757 CCGAAGCAGAGGAAGGAAC
1 CCGAAGCAGAGGAAAGAAC
259776 CCGAAGCA-ATGGAAAGAAC
1 CCGAAGCAGA-GGAAAGAAC
259795 GACGACCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.45, C:0.21, G:0.32, T:0.03
Consensus pattern (19 bp):
CCGAAGCAGAGGAAAGAAC
Left flanking sequence: Indices 259257 -- 259756
GACCAGAGCTCAGATACTGGAGAACATGGAGGAGGAAGCAGCAAGTGATTTCTTCAAGACGGCGC
TCTTCATTGTAGCTGCAGGATCCAATTTTGGAGTATCTTTCACCTTCAGTACCGTTCTTTGGACG
AGAGAAGCCTTATCCTTCATACTTTCTGGACGTGTTGGTTTCCAATCTGACATTTTATCAGAAGG
TTCTGCCAATTTATCCCTACTGTAGTTTTGTGTCGCTTGCTCTTGTTTGCTGCTGACCTCTATTT
TCTTTCCCTCGATTAAGAGGCTAAATGAACTGGCGAAAGTTTGTTGTGTCCGACGATATATCGGT
TGTATACCGTACGTTCGTGCTCTGGAGTTCATGCCTACAGGGGAGTGTTCAGCATCCGCGAATCG
AGTCACTGAAGGTTACAACAAGAAATTGAAGAGGATGGTCGAAAAGATGAACCAGGAGATGGGTC
CAGAGAGCAAATTTGTGTACGTAAATACGAAGGAGTTTGGCAGCG
Right flanking sequence: Indices 259795 -- 260294
GACGACCTAGGAGGTAGTAGTAGTACGAAGCCAGAAGGTGGTTTGATTCAGAAGTTGAGTGAGGA
GGCTTCGACCGTCGCCACAAAGATTCTTATGAGGCATGCTTCTGACGGGCTGCCACGCGGGAGGT
ACTGGAAGACTTTTCAAAGGGCTAAGTATAGGCACCGGGAAAGGGTGGGGGGTTGAAGTGGAGTT
GCCACGACGATTTCTGGTAAGTCGATTGCGGTGGAACGTGTACTTGGGGAAAGCAATAATCTTGC
ATTTCTTTCTTCAAGGGCAGCCCCTGGATTTTGTCTCAAAGGAGGAATCCGAATTCTTTCACTTC
GAATATGGCAAGTGTGATTTATCATTGTGGGGTTTTTCTGGGAGGGGCACTTCATGCGTACACTA
TAAAGACAGGATTGGAACTGAATTGTACAATATGAAGCTCTCTTACCAAAGAAAGGGAGACACTA
TTTTACTATTTTATGTGTTCTTTGAAAGGCAAAAAGCAAATATAA
Found at i:313923 original size:11 final size:11
Alignment explanation
Indices: 313904--313936 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
313894 TATATTTACA
*
313904 AAGAGTATGAG
1 AAGAATATGAG
313915 AAGAATATGAG
1 AAGAATATGAG
313926 AAGAATATGAG
1 AAGAATATGAG
313937 TTTCAAAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.30, T:0.18
Consensus pattern (11 bp):
AAGAATATGAG
Left flanking sequence: Indices 313404 -- 313903
TATCAGGTATCGCTGGTTGGAATTTAAGCAAATTAACGTTAGGGTAATGAGCTCGCACTGGGATT
AGTGCTTGGTGTGGAAAGCGAAAAGGACATTAGAGCTAGGGAAAGGCTTACTAAAAGGAGGAAGC
TCACTTTCAACCCGGTCAAAAGATCTCACTAGGGAGAAAGCGGAAGTGAAAGACTGGCTACCCTC
ACAGCATCGTTAGTTCCTGGATCTCTTTACTTTGCTGTCAGTGAAGCCTATACCAATTGTCTCTA
CCCTCCCCATCTAAGCTCTGTCTTCTCTAGCGGATCTAGTTTTCCTAGACGAGTAATCTTCTTCA
TCAGGCGTCCATCTCGATAGGGGTAGTGGAAGGAGTTCATCCCCTAAAAAACCTATAAACTAGAG
TATTACCTTTTAATTAATCTAGAGTATTTCTTTTTCATTTTTTTTAAGAAGGAGACATATCTTTC
TTATTGGCAGGTATAAAGTATCAAAAAGGAGCAGGTATATTTACA
Right flanking sequence: Indices 313937 -- 314436
TTTCAAAGAGGGGAAATGAGACTACTATACTATACGCATTTTCTGAGGACCAGGCTGGTCGGGAT
TACCCTTACAAAATACCTACGAGATTGGGTAAGTAGACGACAGGAGGGTCTGAAGCCCCATATAT
CCCTTCCTGGGCCACTACTTTAGATTGTTGTAACGTATGCATGCAGAAGAGAGATTCTAGGCCGA
GAAAAGCCCTAGTAATTCAATGTGACCAGCCAGCACCTATTGGTTGGGATTACTCAAGGTATACC
AAAAAGGTTTAGTGTCTCCTCGCCATTCATTTTGGAATGCCATCTAGGCGAGCAATAGTTCTCCG
TTTCCTTCGTAATATTTGGCCGAACCCTGAAAGAAATATATAGGGCCCAAAATCATAAGATTCTC
TGGAATCTCCACTGTTGCCTGACCCGAGCAAGTAGTAAGCAACTGTAGCGAGCACTGACTAGTTT
CAGAGAGTCACTGCTTTTCTTCCTTGGAATAAGCGTTCCAACTTA
Found at i:322596 original size:14 final size:14
Alignment explanation
Indices: 322579--322611 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
322569 TTAGTTCGTT
322579 TCTATTTCTAGATA
1 TCTATTTCTAGATA
*
322593 TCTATTTCTATATA
1 TCTATTTCTAGATA
322607 TCTAT
1 TCTAT
322612 ATATTAGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.27, C:0.15, G:0.03, T:0.55
Consensus pattern (14 bp):
TCTATTTCTAGATA
Left flanking sequence: Indices 322079 -- 322578
CCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTTGAATCTGGG
CTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTC
TTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACTTTTTCCTCTGTATGAA
TCGATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAA
ATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTA
ACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGA
TATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGA
AAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCGTT
Right flanking sequence: Indices 322612 -- 323111
ATATTAGTATTAGTTATCTATATATTAGTATTAGTTAGTAGTACTATTCTATTAGTTAGCGATCC
CGGCTCTGTGAGTTCTTTCTTCCGTGATGAACTGTCGGCACCAGTCCTACATTTTTTCTCTGTGG
ACCGAGGAGAAAGGGGGCTCAGCAGGAAGAGGATTGTACCATGAGAGAAGCACAGAGGTCAACCC
ACTTCAAATATGGAACATGGATTCTGGCAATGCAACGGAGTTGGGTCCTCATATCGATCCGAATG
AATCAGTCTTTCTACAGAGGTCAATCTTTGCCTATTAGGCAAGAGGATAGCAAGTTCGAAATTCT
GTCTCGGTAGGACATGGATTTCTATTACTATGAAATTCATAAATGAAAATGAAGTAGTTAATGGG
AGGGCTACCATTATCCTTTTTCTTGTATGTGTTCCTAAGAGAAGGAATTTGTCCATTTCATGTTT
CGAGGTCTCAAAAAAAGGGCGTGGAAACAGATAGAAACTCTTGAA
Found at i:322631 original size:21 final size:21
Alignment explanation
Indices: 322605--322648 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
322595 TATTTCTATA
322605 TATCTATATATTAGTATTAGT
1 TATCTATATATTAGTATTAGT
322626 TATCTATATATTAGTATTAGT
1 TATCTATATATTAGTATTAGT
322647 TA
1 TA
322649 GTAGTACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (21 bp):
TATCTATATATTAGTATTAGT
Left flanking sequence: Indices 322105 -- 322604
ATCCTTTTCGAGTTTCCATTTCTTCATTTTGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTT
GGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTAC
AGCGTTTGCATCAATAGAGAACTTTTTCCTCTGTATGAATCGATATTATTCCATTCCAATTTCTT
CCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCC
ATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCG
TCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCAT
AAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATT
ATCTATATATTAGTTCGTTTCTATTTCTAGATATCTATTTCTATA
Right flanking sequence: Indices 322649 -- 323148
GTAGTACTATTCTATTAGTTAGCGATCCCGGCTCTGTGAGTTCTTTCTTCCGTGATGAACTGTCG
GCACCAGTCCTACATTTTTTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCAGGAAGAGGATTGT
ACCATGAGAGAAGCACAGAGGTCAACCCACTTCAAATATGGAACATGGATTCTGGCAATGCAACG
GAGTTGGGTCCTCATATCGATCCGAATGAATCAGTCTTTCTACAGAGGTCAATCTTTGCCTATTA
GGCAAGAGGATAGCAAGTTCGAAATTCTGTCTCGGTAGGACATGGATTTCTATTACTATGAAATT
CATAAATGAAAATGAAGTAGTTAATGGGAGGGCTACCATTATCCTTTTTCTTGTATGTGTTCCTA
AGAGAAGGAATTTGTCCATTTCATGTTTCGAGGTCTCAAAAAAAGGGCGTGGAAACAGATAGAAA
CTCTTGAATGGAAATTGAAAAGAAATTCGCCGCTTTACAGCACCA
Found at i:325901 original size:18 final size:18
Alignment explanation
Indices: 325878--325914 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
325868 TCAGAACTAG
*
325878 ATCCGTTGCTTGTTCGGA
1 ATCCGTTACTTGTTCGGA
325896 ATCCGTTACTTGTTCGGA
1 ATCCGTTACTTGTTCGGA
325914 A
1 A
325915 ACAGTCATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (18 bp):
ATCCGTTACTTGTTCGGA
Left flanking sequence: Indices 325378 -- 325877
TAATGTTGGTTTGAAAGCGCTGTTCGAAGTGGGAAGTTATTCCTTAGCCAAGCAAAAGGATACCT
ACACAACCATATAATTGATACGATTGAATTGAGTAGATTGATATGCTTGTTCGTTACTTGACATT
TTGAGCAGGAAGCGCAGGTTTCAGTAGTCAAGCCGGAGAAGGACTCGTTACCCAAGAAAGCCTGG
GCATCACTCCTGTCCTGTAAAGCAGATCCGGGAAATGTTGCATTTTCCATCGACCAGGGGATCAC
TCCTTTGAGCAGTGTCTTTCTCCGAATAGTAGTCGTCTGCCATCCCTGTTCTAAAAATAAAATAA
CCCACATAAGCTGGATTGCCAGACCAACCTAGAAAGCCTATAAAGCGTGCCGTCACGTGAGATAA
ATATCCAAAGAAGCTCTAGGATACGAACTATACAGGAAACCGTTCTAATTTCTTTCTACTAATTC
TTCTTCTTTCATTGTTGAATCTGCATTCTTATCTCTCAGAACTAG
Right flanking sequence: Indices 325915 -- 326414
ACAGTCATTGTTGAATCTGCATTCTTATCTCTCTTTCCTGCATTCTTAGCTAACTCGGCTTATAG
TCAAATCGCTAAGGGAATCAGGATGAGAAGCATCAGAGGAAGTCAATGGCATAGGCAACAGGAAA
TCCATTCCGCAGAAGTAAAGTCAACTGATTCTTTCATTCCAGTTGTTAGCCCGCCCGTAATACAG
CTCAGCTTGAGAGACTTACGCAATGCAATCGATGTCTGCCGGTATGGTTTTAGTTTATGGTATAC
CTCATCCCCGATTTGATTACTTTCTGCGGCTTATGCCTCTTACCCTGCTCTTTAAGTTCAGTTCC
GGTTAGCCCTACTACTTATGGATTGGATTAGTCGCCAATAAGAGGAATCTATTTACTAGGAAAAA
GTAGCGCTGAGAGTTCGGTGGAAGGGGAAACCATTCCCGTATGGAGCCAGCCTCCCTTAAAGGAA
TGTCTATATGGGGTCACCACTCTTTTCAGTAGAAGACTGAGTGGG
Found at i:327100 original size:21 final size:21
Alignment explanation
Indices: 327074--327117 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
327064 AGCAGCGCGC
327074 CTTACTTTACTTTTACTATTA
1 CTTACTTTACTTTTACTATTA
327095 CTTACTTTACTTTTACTATTA
1 CTTACTTTACTTTTACTATTA
327116 CT
1 CT
327118 ATAGTTATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (21 bp):
CTTACTTTACTTTTACTATTA
Left flanking sequence: Indices 326574 -- 327073
AGGCTAGGTAATAATAGAAAGATGAAGAGAAGTGGGCGGGCATGAGGTATCACAGGAATCTTCAT
GTTCAAATGTGAATGAAAGCTTTAATCACATCCGGATTTTCTAATCCTTACTTTCGGAGAGTGGA
TCTATCCAATTAGAATCCCCCATCCGTCCTACTCGTAATACAATAGCAATAGTAAAGACAGGACG
GAGACTTTTGAAAAGAAAAGCGAAAAGCCTTAACTAGTAATCGTAAATATGGTATGGCCCGGCTG
TAAGCTTACTTACTTTTGACTCATACTCATCAACTCCAATATCCGTGCTTTATCTCGCTGCTTCT
GATTGATCTTATTCCTTGACTTCCTTACTAAAGAAACCTACGGATTGGTACGATCTTGAATCAGG
GAGTTGACTTATTACTACTAGAGTGAGTTTTTCACTTACCTTTCTATCTCTGATACTGAAACCTA
GTCCTCGGCCTATTTCTTCTACTAGACTTATCTTTAGCAGCGCGC
Right flanking sequence: Indices 327118 -- 327617
ATAGTTATAGTGGATGTTATCAAGGAGAGATACATTGCTTTTTGACTAGATTTCTTCTACTACAA
GTAGAAGCGGAAACAAGGAATTCATAATCACCAGAATAAGTCAGTAGCTTCTTTCTTACAGCTTT
TGACAAGGAAAGCAGTTCTAAATGAGAATCTCAAAAAAGAAAAGCAAGAATCCAACTATGTATAT
GTATGCGAGATTACCACTCACGTTAGATGAACTAGAATGGCAGGGAAATGAGTAGTACATAGCCT
TCTCCGATGGCCGGAATTTAAGCTATTGTCAACGAGAGGTTAAAGAATATTCCCGCAGGTCGGGA
TAAGAAAAGATCAGAAAACGGTTCGGTTGTGAATCTGGGTCAAGAAATGGGGGCGCCAGGAGGTT
GTGCAAGCACTAGAAATGACGAGCATGGAGAGGTCAATCTTGGTAGTCAGGTCTGGTAGAGCAAT
CTAAAATTATCATATAGAAATGTTATGATTTCGGTATTGATCAAA
Found at i:333709 original size:21 final size:21
Alignment explanation
Indices: 333685--333728 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
333675 GGCTAGGGCC
333685 TATCTAGTTTAGTCAGTACTT
1 TATCTAGTTTAGTCAGTACTT
*
333706 TATCTAGTTTAGTTAGTACTT
1 TATCTAGTTTAGTCAGTACTT
333727 TA
1 TA
333729 GAGTTTAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.50
Consensus pattern (21 bp):
TATCTAGTTTAGTCAGTACTT
Left flanking sequence: Indices 333185 -- 333684
GTTGTTCGTATTTCATTTTCTTCAAAGGCACATGCACTAGGTTACTTACGGAATCTCAAAGAAAG
AGTCGTCCAGGAGCACTTCGTTAGATTTGCATGTGTTAAGCATATAGCTGAAGTAGCCTAAGCGC
TTCAACCTGCTCTTACAAGACGAATCTCTTTCTATACGCAATTGAAACTAGAGTCTACTCCTTTC
TGGTCTGAAATCTCAGTGGAGACGGTAAAGATTAGGTGCCTTTTTCTTTACTCTTTCTAAGATAA
GGAAGATTTCCTTGCAAAAACGAATTTCATACCCCTCCCCTGGCAAATCCACTTCTCCCATGCCT
CAGAACTATTGAAATCGGTTTCAGTCCCATATCAGTTTATCCATTGGTAATTCTAAAGCTTCACC
ATTTCCTAAGCTAGTCTATCTGAGGTTTTCTTTGCAACTTAGTTACTTTACCAGCCTCGACTGAC
CCGGATTATCACAATCGCAACCCTAACCTAGCGAAGGCTAGGGCC
Right flanking sequence: Indices 333729 -- 334228
GAGTTTAGGGTGTCTTCTCTTCCTTATGGGAATTCACTACTTATTTGATTGTTCTTGGAATTCTT
ATGGGCATATTTCCACAAGACTACGCTACCTTTCTTCTAGGATCTGCAGTTCAGGTTTAGGCTTT
CATGGCTCTTTCTTTCGCTTGTTCCACGTTGCCATGGGTATCGAAACCCTGATACTCCCATCACT
TGTCAATGAGACAACCAATCCTAGAACAATTAACCTACCTTTTCTCTGGCCTTGTGGCCTATTCA
ATCTTGTTATTTAAGTACATGAGAACTTCAGTTGTAGAGGGCTAAAAGCGATCCCCTCTACCATC
AAAGGGTTAAAGATTAGTTGACACTAAACCAGACATAGCTCAGAGTTCTTTCTGTCTTAGGAACA
CTGCAGAAACACTGCTTTGAAGTAGTAGATTAGGGGATAAGAAAAGAAAAAGGCGAGTGAGAGTC
TCGTTTTCAAATGAATAAAGAATTCCGAGTGAAAAGTAATTTCTC
Found at i:349663 original size:25 final size:25
Alignment explanation
Indices: 349634--349683 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
349624 AAGAATCAAT
349634 TGATTGCGATAATAGGTCAACTAAA
1 TGATTGCGATAATAGGTCAACTAAA
349659 TGATTGCGATAATAGGTCAACTAAA
1 TGATTGCGATAATAGGTCAACTAAA
349684 CATAAAGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (25 bp):
TGATTGCGATAATAGGTCAACTAAA
Left flanking sequence: Indices 349134 -- 349633
AGTCTTTACATTGGATGAGGTGATAGGAAAGAAGAGGAATCCACTGCACTTCAATCTTCGTCAAC
AGGTGGTACCACTTATATCACTCGGTATTAATAAAAGAGTAGGGTACGACCTCTTAAATCAAGTC
TGGAATCAATCAGTCATTGCTATGGGTGTTATGTTCAATAGGCTTTGGGTATTTCTGAAAGGAAA
GGGAAAATAAGTAACTAAACAAAGAAAGTAGCTGTTACCGAGACGAGCTATTTGACGGACTAAAT
AATAGGCAGAGTGGGGTTACAGGTAAACATCGCCTCTGTACAAGAATTCTCCTCAGGTAGCTTAT
CCAAGGCAATAAGACCCAACAGAGAGCAAAAACACATATCAATCATATATCGCCCGCCGTAGAGT
TGTTTTTAGGTCAAATAACAAACAAAAAGGTTATTGCAACGAAGTAGGGCATTGCATTGAAAGTA
GGGCTTGTCACTAGTTCTTGCTAAGGAGAGTAGTCAAGAATCAAT
Right flanking sequence: Indices 349684 -- 350183
CATAAAGCTTTTTACTAAGTAAAAGTTAGTAGTTCTTAGTAAAGCTAAGTAGGCAAAGGAGTTTC
CGTATGTAGGAAAGAGAACAAACTATACGCCTGTGTTTTCGGATGGAGTTGATTCAGTTAAAAAA
TAACCTTAGGTAGGAGTAGACTAGGGCGATAAGCATGAATTTGAGAAAAGTCGCAGGGAATTACC
TGGGTCTTCTTCTTATGAGGAAGCAGGTAAGCATGTTGGATTGGGTCTGGCTCAAGTGGGTAGGT
CAGAATATATATAAGTAGGAGTTTCTGGATTTGCTTATGCATGAGTTGTACTTTCAGCTTGGGAT
GGGACGTCGTAAAAGAAATACGCCGGTGGGTCGGCAAGCAGGTCACCTAGATTATGAGGAGTTCA
TTTCTGCATTGGAATAGGCCTTCCTTGATTACTTGACTGGTGCTGTCTAAGTTCCCGCCGCTCTT
ACTGCTCTCGTAGTCGTTGCCGCTCTGACTCTAGCTGCATATAAA
Found at i:391937 original size:16 final size:17
Alignment explanation
Indices: 391907--391938 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
391897 TCACCATTGT
391907 CTTCTGTAGGGATAAAG
1 CTTCTGTAGGGATAAAG
391924 CTTCTGTA-GGATAAA
1 CTTCTGTAGGGATAAA
391939 CATACGGGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (17 bp):
CTTCTGTAGGGATAAAG
Left flanking sequence: Indices 391407 -- 391906
CTACCTTCTTGTCAAGCAGGTGGAGGTATAATGGTGAGAGTGGAGGAAAAGGAGGGAGACTGTCT
TCGAATGTGCTTTGCCTTTCCAGAGGATATTCCCTTTTCTTTGATCCAGCGAAGAAAGCTGCTTC
AATAAAATAAAGCTACGTTCCTTCGATTCCGGTCTAGACAAAGGGATAGGATAGGCCTTTCAGTG
ATAGATGAAAGAAATAGCGTATCTGGTCAAGCGAGGAACTACTAATGTTTCGAGCAAGAAAGGAG
GAAGATCGAGATTCCAATCTGACCACTGGCAAGGGAAAGAGAAAGATTGCATAAGTTTCATAAAA
AAGTACTGTTAGGTTAGGTAGGTAAGGAACATCAAGATGTCAGTCAGGCAAGTCCCGTCCCGGAT
TTGGCTTTCGGCTAGTTGAGATGAAGGCCTTTACAGCTATAGTGTCAATCTCAAGCTCGCTTTAT
CTTAATTGATTGAGTGAGTGAAAAGTGGAATAAGTTCACCATTGT
Right flanking sequence: Indices 391939 -- 392438
CATACGGGCGGGCGGGGTTTTCTAAGTGGTTCACAAGTGAAAAGGAGTTTTTGGTAATTGGACAT
GTTGTGCTTGACCACCCAGGATGAGTAGCAGGCTTAGCTATCGAAGTGATAGGCCCGTAGACCAT
TTTATCTTTCTTTCTCGGAATAGCTAGCTAGAATCAGTTAGCGATGATTGGTATTTTAAAGTTTC
CGCTTCGAGTTAGTCGATCTTTCCCAAGAAAGGCTAGAGGGAGACATTTCGAAAGGTCTTTCTTT
GAAGCCAGGACAAGGCCCATGAGATTCATTAAGTAAGTAGTGGGGCTGCCTTCTTAGAGAAGATT
TATTTAGAAAAGCAGAGCGAGAGCGAGTAGGTAGGAAGTGTAACGTTGAGATCTCTCCCTTCTCC
CTCCGGGTTCCTTAGTTTGATAGGTGATCCTAGCATTTTCAGTAAGCCAACCAAAGACTGCCTAC
TTGTTCTATGGAGGATCAGAAGCTGCGCCAACAATGCTTCGATAT
Found at i:398408 original size:29 final size:29
Alignment explanation
Indices: 398366--398423 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
398356 GTTGAAGCGG
398366 GTTGCAGGACTGGTACTTGACCATTATGA
1 GTTGCAGGACTGGTACTTGACCATTATGA
*
398395 GTTGCAGGACTGGTACTTGACCGTTATGA
1 GTTGCAGGACTGGTACTTGACCATTATGA
398424 ATAGTAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (29 bp):
GTTGCAGGACTGGTACTTGACCATTATGA
Left flanking sequence: Indices 397866 -- 398365
AGACTTAGGGAATTCTCATAGTTGATGATTATTTCCTACGAAAAGACAATAGCCAACAACATAGA
TTTGCCACGGACAAGGATCTTGCCACCTTATTGTGAATTCCCTTTTTTATTCAATTGTGTACTCG
TTCCTGTTGTTGTGCCATTAGTGACTTGAGAAGACTGTGTGAAAGAGAGCAAGAAGCCGACGCGA
GGAGATCAAGATCACTGTTGTGCTCATGCCATTAATGCTGCCCAATCCACTCTTAGATCTCTTCC
CGCCCTAAATTCCTTAACCCATTGCCAAAAAGAGATGGGAAAAGAACCTCCTTTTCTTACGCTCC
TCTTTCTCAGAGAGATGGTGAACTTGCCCTACGAAGCTGTGAATGATAACACGGGAGGGGTACAC
CACAAGAATCTATAAAGATTATGGAGATTCATCAAAGATTACGAGAATTGGAATTACAGCAAACC
AGGTATCAGATCTTATCATTTGTGGTCCTTAGAACGTTGAAGCGG
Right flanking sequence: Indices 398424 -- 398923
ATAGTAAGAGTTCTTTCTACACTTGTAGATGCGTTAGGTATGTAGTAGTGAATTTTCTCCCATGT
GAACTTCAGAGAGATTCGTTAGATTACCAACAGATAAAGGAATTGGACCTTAAAAGCAATTTCCA
AAAAAGTTCAACAAAACGTTGCGTTTAAGTCTACCCATGGTACTAGGAATCCTTCCACTCAACAG
GCAACGATCCATAATAAACTCAGTTAAGCCGATCAAATTTCCTATTTCTAAAAACCTATCACGAA
ACTATTCTTAGCGAATAACGTGCCTTTACTAGTAGTCCTATTTTACTGACCTATTCCATTGCTTC
CTACCAGTTCCGATCCAAATGCCTACTCCTCTACTCCTATGTTTCACAAACCTGCGGCCTATCCC
TTACCAAGCTACCTAATAGCCCTGGCAGTAAATAAACTAAGTCCCAAACCTTATTTATCTTCATT
GACGTAATCTCATCCAGCATGGCAGCACGCCATTTCGGGTCCTTT
Found at i:402150 original size:23 final size:20
Alignment explanation
Indices: 402108--402147 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
402098 AATTTACTAT
402108 ATTATATATAGTAGTAATGA
1 ATTATATATAGTAGTAATGA
402128 ATTATATATAGTAGTAATGA
1 ATTATATATAGTAGTAATGA
402148 TGAGCACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (20 bp):
ATTATATATAGTAGTAATGA
Left flanking sequence: Indices 401608 -- 402107
TTAAGTTACATTACCTGCTGCACCGAGCATTGATTTGAACGAATTAATTACCAGACTTATTGGGG
AGTGTGTACGACTTAGTGGAGTGTTTCCTTTTTAATAGAATCAGAGCAGAGGATTGAATCGCATG
AATGGGTTGAGCATTTTCATAGATATACCCTTTTTCTTAGGCATCGATTCTAGGATTGAAGAAAG
GGGAGATTTCCCACACTTTGAAAGATTCACCTATTGGGTGGGGCGTGTTTGAATTACCTACCCGG
GATTTTTCATATTAACTGTAGCTAGGGAATTGACTGACTCTGATTAATATCTTTGTCTAGCATTT
CCAAATTGCCTCAAGACTGAGAAAGATTTTACGGAGTTAATTACCACAGGGCGGCTTGCCCTAAG
AGTATAGTTAAGTGGGTCAATTCCCAGAACAGACAGGGTTTAGTCAGTTCATTGACTAGTAAATG
ACTTGATCCACTCATTAGCATTGAGTGTTGTCTGTAATTTACTAT
Right flanking sequence: Indices 402148 -- 402647
TGAGCACTTTTACCAGAAAGAGTTGACTGAGTTAATGGATTCGCTTGTTGGCTAATCTGAATCGA
CTTACTTAAGTGTGGTGTTACCAGGCTTGGAAAGAAAACTTCTTTATGTGTTTGATTTCCCTAAT
TTACTGGTTGGCCACTCAAATACCTGCCAAGCATTCCCAATCTCTGTTTTTGTCACACAATAAGA
TCCAATTTGTTTAGACTCGTTAGGTCACCCATTACCTTGAGTGAGGCCAAAGGTGTACACCTCTT
GTCATGAAGATGTGATCATATCCACCGAAAGGTCTTGTTCTAAGCCCAATCCTCTCGTCTTAGGT
TAGGATATCCATAAACCAACAATAACGGGAGCTTCTCCTTTTTGGTTGACAACCTATGTTGGTCT
GACTAAGCCCACTATCCTAATGGGAGGGTCCCACCTTGTGTCGGGGTAAGGCGTAACCTCATCTT
GGGTTAAGGGCGAAGCTTGAAATTTCTTCACTTTCCGTCTAGGGC
Found at i:411942 original size:23 final size:23
Alignment explanation
Indices: 411910--411955 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
411900 GCCAGATCAT
411910 GACTCATCATATTTATATATATA
1 GACTCATCATATTTATATATATA
*
411933 GACTCCTCATATTTATATATATA
1 GACTCATCATATTTATATATATA
411956 ATAGAAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.43
Consensus pattern (23 bp):
GACTCATCATATTTATATATATA
Left flanking sequence: Indices 411410 -- 411909
GCACCTAGGAATTGATAATCGAATTACCGGATCAAAGGAATCTATTCACCTAGTGAGAAGAGGCG
CGTGCTCACGGAGTTGCTTGTTGGGAAATCCATGAGTAGTCGTTTTTAATATAGGGGAATCCTCA
AATCAACCTGTTTCCGGATGGGAATATTAGAGGCTATTACGACTCAATACTTCTCAGTCCACGGT
AAAGGCGATATGATTAGGATTGAGGACACTGGAACCTAAACTACTCAGTTGACACTCCTACCAAT
TGACTCTGTTATACTCACTTGAGAAACCCGTACTACTTAATAAACGGAACTCTCAGAGAGACATT
AACCACATGGGTCACAATCCCTTGTTTAGGCTGACCCTCTTAGAGAATCAGGAAAGAATGATACA
TTCCAACTGATCTGAAAAAAGAGAGAGACAAGTAAAGTACTAAACGAGAAAAAAAGCATTTATCG
AGAAAAGGTCCCATAGTCATGATTGGGTCGACCAGGCCAGATCAT
Right flanking sequence: Indices 411956 -- 412455
ATAGAAAGATGAAAGGTTTCTTTTTGTTCGGTCAGTCTGTTTCCTCTCGATTCACCTAAAACTTC
TTTTGCCACTGACGTGATACAATGAGCCATCTCATTCTACATTGAGTTAGCATCCTCACCTAACT
TCCACTCCGTCTCATTAATTATTTTATCTTTAAACATAACTTGCTTATCCCCTTTCCAATTCCAC
CACCTAATCCTAGGCTCCCTTGCTCCTTCTCTTCCATCTCTTAATACTAAGATAGAGTACTCAAA
ATCTATGTTGTCTCTCCAGGTATCACCCTTACAATCCTAGAAATACTTCTGATCTACTCGTCGCG
TTAGGAAGAAGTCAATCTGACTAACATTAGAACCACTCCTAAAAGTTCTCAAGTGCGAGTCTCTA
TTCCGTGTTGGCAAGTATCAAATCATACGCCATAGCAAAAAGATACTTTTCCGCGTTATCTCAAG
AAAAAGGACGAAGAATTATAGAATTGTCGTGTATGTTACTTTTTG
Found at i:420400 original size:22 final size:24
Alignment explanation
Indices: 420375--420421 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
420365 CCTGATGACG
420375 ATTTC-CAACCC-GATTGATCGGT
1 ATTTCACAACCCAGATTGATCGGT
420397 ATTTCATCAACCCATGATTGATCGG
1 ATTTCA-CAACCCA-GATTGATCGG
420422 ACTCACCTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 5 0.24
24 6 0.29
26 10 0.48
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (24 bp):
ATTTCACAACCCAGATTGATCGGT
Left flanking sequence: Indices 419875 -- 420374
GGTTGTTTCCCTATAAGGTTAACCCGCAGAATGGCCATCCTATTTTGGAGTTACCAAGAGTTCTT
TCGTTGATAGAGTATTCTCAAACGGCGAAGCCTAGTCATAGGGAAAAGAAGATGAGGTGACCATT
GCCCTTACTTATCTTGTCACTAGCATGTTTACCTATACAACTGCTTGAAACTAGAGTGATGGGAG
AATATCGTTGCAAACGAAAGGTGCGCTATTAAAAGGAGTACCGTCTTCTTTGCCTTAAACCTATG
ATCACTGAGCAATTACGTTACGTAAAGTTGGTCTTTTTACTATCGGCTTCGCACCAGTGTCACCA
AGCAGTTTTTCAAAAGAGTAAGATAAGGGCCGAAGGACAAGCTTTCTGACGAACCTTTTCTACTT
GCTGCTTTGGCAACAATCCTCCAGTACATCTTTGTGAAAGCAATTCCTAACCAGGCGCGCAGCGG
TGTACAACACTCCTTCGCATCTCACTCGAAACCGTCCTGATGACG
Right flanking sequence: Indices 420422 -- 420921
ACTCACCTTCCTCTCAACACCAAATAGAGCGGTCATAGTACAAAATAGAGCACGGAATTGGTCAT
AGTAGTTGCCTTCATGCTTCAGTACCACAGGCGGCGCTACAACCAAGCGAAATGGTACGGAATAG
CCCTGGCTAGAGCAGCTAGGACTAGAGCGAGGACAGTGTCTTGGAAGTCGAGAATGGACGAGAAT
TGATGTATAATAAGTGGAACTACATTCCTATGCCTCATGCTTTCTCTCCGAGCTTTAGCGAGTAT
CCAACTTTTTCTTTCCACCTATTCCTTTCCCCAACTATCCGAGATCCGAGTTTGGGTTTCCTACC
AGTCCTTTCCCTTCGCCAGTCTTAGACAGTTCGCTTACCCGATAGGCTTGGCAATTCCACTACTT
TAAGTTGGGATTTATTCATGTCTCTTTCCTTTTGTCCTCGAAACCCTCTCTTCCCCGAAGAGAGT
CTTCCTCTACAGGAAACCAGTGCTTTTCTTTCCCTACCCTGGAGC
Found at i:426840 original size:24 final size:24
Alignment explanation
Indices: 426813--426861 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
426803 TATGGTCTAT
426813 TCCTTAACTGGTATCTTTCCTTGC
1 TCCTTAACTGGTATCTTTCCTTGC
426837 TCCTTAACTGGTATCTTTCCTTGC
1 TCCTTAACTGGTATCTTTCCTTGC
426861 T
1 T
426862 TTTAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.29, G:0.12, T:0.47
Consensus pattern (24 bp):
TCCTTAACTGGTATCTTTCCTTGC
Left flanking sequence: Indices 426313 -- 426812
TTCGATCTATTCTTCCCGTTTCCTCAAACCAGTGCTTCTTAGTACAACAGAACGGTTATTGCTAT
TCAACCAGCTCGTACTTCGTATCATACCGCCAGCCAAGCCAATTCCTATTTTAGAATTACCAATT
CATTCCTATTTTACAATTAGTTGATGCTACATGACATCCTCACTCGGGGCTAGTGCTTTTCTAAG
ATAAGAACCCCATATCCGCTCTGGCTGCTGTTTTCTTCTTTTCTCATTAAGATCCTCTTCCCCGA
GCAACTCGCTATGCTCTATTCCTTAACTGCTTTCTAACCGATTGAAGGAAATTCCTCGCCTATCT
TATTCTTTTTCTTGTCTTCTTGTTCTCCTTGTTTTCATTTCATAACTGCTTCCATCTCTGGATCC
GAGCTCGCACTTCGGGGATTGAAGAATACATTCCAAAGTGAGGGTTAACCTACTGCGAAATGAGG
GCTAGTGTTTCGTCACTCTTCCCCGAGCAACCCGCTATGGTCTAT
Right flanking sequence: Indices 426862 -- 427361
TTTAAATAAACAACTACTTCATTTCAACAAATTCATTGATTTCATACATTTTATTCATTTACAAC
ACCAGGCTTGCTCTACGAGGTTCCCCTCCTAAGCTAAATACTTCCCCTCCTAAGCTAAATACTAG
AGTAGAGGGTTTAGTGAATTGAAAGCTTTACTTGCTTCTGGTTCTTAGTGAATTGAAAGCTTTAC
TTCCTTCTGGTTCTTAGTGAATTGAATGCTTTACTTCCTTCTGGTTGATGAAAGCTACATCCTTA
GCTGGTTTGACTTGCTACCATCTTACTTTCTTACTTATAATCTTATAATGGGCTTGCTAGCTTCT
TACTTCCTCGCTCACGCTTGGGCCATAATCCGAGTCTTCTTCCTAAACTGCTATCCAACGAGTAA
TACTTAACCAGCCTCCTTACCCGCTTTCCCCTATCCTTCTTATTCTCAGCAAAGACAATGAGAGT
GAAATACTAGTAATAATGAGAGTGAAATACTCGTTTTATCAAAAC
Found at i:426973 original size:21 final size:21
Alignment explanation
Indices: 426947--426989 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
426937 CTCTACGAGG
426947 TTCCCCTCCTAAGCTAAATAC
1 TTCCCCTCCTAAGCTAAATAC
426968 TTCCCCTCCTAAGCTAAATAC
1 TTCCCCTCCTAAGCTAAATAC
426989 T
1 T
426990 AGAGTAGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.37, G:0.05, T:0.30
Consensus pattern (21 bp):
TTCCCCTCCTAAGCTAAATAC
Left flanking sequence: Indices 426447 -- 426946
CCTATTTTACAATTAGTTGATGCTACATGACATCCTCACTCGGGGCTAGTGCTTTTCTAAGATAA
GAACCCCATATCCGCTCTGGCTGCTGTTTTCTTCTTTTCTCATTAAGATCCTCTTCCCCGAGCAA
CTCGCTATGCTCTATTCCTTAACTGCTTTCTAACCGATTGAAGGAAATTCCTCGCCTATCTTATT
CTTTTTCTTGTCTTCTTGTTCTCCTTGTTTTCATTTCATAACTGCTTCCATCTCTGGATCCGAGC
TCGCACTTCGGGGATTGAAGAATACATTCCAAAGTGAGGGTTAACCTACTGCGAAATGAGGGCTA
GTGTTTCGTCACTCTTCCCCGAGCAACCCGCTATGGTCTATTCCTTAACTGGTATCTTTCCTTGC
TCCTTAACTGGTATCTTTCCTTGCTTTTAAATAAACAACTACTTCATTTCAACAAATTCATTGAT
TTCATACATTTTATTCATTTACAACACCAGGCTTGCTCTACGAGG
Right flanking sequence: Indices 426990 -- 427489
AGAGTAGAGGGTTTAGTGAATTGAAAGCTTTACTTGCTTCTGGTTCTTAGTGAATTGAAAGCTTT
ACTTCCTTCTGGTTCTTAGTGAATTGAATGCTTTACTTCCTTCTGGTTGATGAAAGCTACATCCT
TAGCTGGTTTGACTTGCTACCATCTTACTTTCTTACTTATAATCTTATAATGGGCTTGCTAGCTT
CTTACTTCCTCGCTCACGCTTGGGCCATAATCCGAGTCTTCTTCCTAAACTGCTATCCAACGAGT
AATACTTAACCAGCCTCCTTACCCGCTTTCCCCTATCCTTCTTATTCTCAGCAAAGACAATGAGA
GTGAAATACTAGTAATAATGAGAGTGAAATACTCGTTTTATCAAAACCCGCTCGCTATGCTCTAT
TCCCTCTCACAGCACAGGATTACTTCTCTTCAAAATTGTACACTCCTTGAGGCTTGACGGTCTCA
GTCATAAGGATATTTGATAAACAAATAGCAAATTTCGCCATGTCC
Found at i:427040 original size:34 final size:34
Alignment explanation
Indices: 427002--427102 Score: 184
Period size: 34 Copynumber: 3.0 Consensus size: 34
426992 AGTAGAGGGT
*
427002 TTAGTGAATTGAAAGCTTTACTTGCTTCTGGTTC
1 TTAGTGAATTGAAAGCTTTACTTCCTTCTGGTTC
427036 TTAGTGAATTGAAAGCTTTACTTCCTTCTGGTTC
1 TTAGTGAATTGAAAGCTTTACTTCCTTCTGGTTC
*
427070 TTAGTGAATTGAATGCTTTACTTCCTTCTGGTT
1 TTAGTGAATTGAAAGCTTTACTTCCTTCTGGTT
427103 GATGAAAGCT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.20, C:0.16, G:0.19, T:0.46
Consensus pattern (34 bp):
TTAGTGAATTGAAAGCTTTACTTCCTTCTGGTTC
Left flanking sequence: Indices 426502 -- 427001
TCTAAGATAAGAACCCCATATCCGCTCTGGCTGCTGTTTTCTTCTTTTCTCATTAAGATCCTCTT
CCCCGAGCAACTCGCTATGCTCTATTCCTTAACTGCTTTCTAACCGATTGAAGGAAATTCCTCGC
CTATCTTATTCTTTTTCTTGTCTTCTTGTTCTCCTTGTTTTCATTTCATAACTGCTTCCATCTCT
GGATCCGAGCTCGCACTTCGGGGATTGAAGAATACATTCCAAAGTGAGGGTTAACCTACTGCGAA
ATGAGGGCTAGTGTTTCGTCACTCTTCCCCGAGCAACCCGCTATGGTCTATTCCTTAACTGGTAT
CTTTCCTTGCTCCTTAACTGGTATCTTTCCTTGCTTTTAAATAAACAACTACTTCATTTCAACAA
ATTCATTGATTTCATACATTTTATTCATTTACAACACCAGGCTTGCTCTACGAGGTTCCCCTCCT
AAGCTAAATACTTCCCCTCCTAAGCTAAATACTAGAGTAGAGGGT
Right flanking sequence: Indices 427103 -- 427602
GATGAAAGCTACATCCTTAGCTGGTTTGACTTGCTACCATCTTACTTTCTTACTTATAATCTTAT
AATGGGCTTGCTAGCTTCTTACTTCCTCGCTCACGCTTGGGCCATAATCCGAGTCTTCTTCCTAA
ACTGCTATCCAACGAGTAATACTTAACCAGCCTCCTTACCCGCTTTCCCCTATCCTTCTTATTCT
CAGCAAAGACAATGAGAGTGAAATACTAGTAATAATGAGAGTGAAATACTCGTTTTATCAAAACC
CGCTCGCTATGCTCTATTCCCTCTCACAGCACAGGATTACTTCTCTTCAAAATTGTACACTCCTT
GAGGCTTGACGGTCTCAGTCATAAGGATATTTGATAAACAAATAGCAAATTTCGCCATGTCCAAC
ATTGACTCAGGCCACGGGTGATCTGTCTCCAATGACTCGTCAATACCAAGTTCTTGTGCTAATAG
AGGATTCTGAATGAAAATATTCTTTAGACTCGAAAGCATCTCACT
Found at i:433452 original size:21 final size:21
Alignment explanation
Indices: 433428--433471 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
433418 ATAGTACTAC
433428 TAACTAATACTAATATATAGA
1 TAACTAATACTAATATATAGA
433449 TAACTAATACTAATATATAGA
1 TAACTAATACTAATATATAGA
433470 TA
1 TA
433472 TATAGAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.34
Consensus pattern (21 bp):
TAACTAATACTAATATATAGA
Left flanking sequence: Indices 432928 -- 433427
TGGTGCTGTAAAGCGGCGAATTTCTTTTCAATTTCCATTCAAGAGTTTCTATCTGTTTCCACGCC
CTTTTTTTGAGACCTCGAAACATGAAATGGACAAATTCCTTCTCTTAGGAACACATACAAGAAAA
AGGATAATGGTAGCCCTCCCATTAACTACTTCATTTTCATTTATGAATTTCATAGTAATAGAAAT
CCATGTCCTACCGAGACAGAATTTCGAACTTGCTATCCTCTTGCCTAATAGGCAAAGATTGACCT
CTGTAGAAAGACTGATTCATTCGGATCGATATGAGGACCCAACTCCGTTGCATTGCCAGAATCCA
TGTTCCATATTTGAAGTGGGTTGACCTCTGTGCTTCTCTCATGGTACAATCCTCTTCCTGCTGAG
CCCCCTTTCTCCTCGGTCCACAGAGAAAAAATGTAGGACTGGTGCCGACAGTTCATCACGGAAGA
AAGAACTCACAGAGCCGGGATCGCTAACTAATAGAATAGTACTAC
Right flanking sequence: Indices 433472 -- 433971
TATAGAAATAGATATCTAGAAATAGAAACGAACTAATATATAGATAATCGAAATTGAAAAGAACT
GTCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATA
TAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAA
GCCAGTTAGAAAATGGATTCCTATTTGAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCC
GTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGGGAAGAAATTGGAATGGAATAA
TATCGATTCATACAGAGGAAAAAGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATA
GAGGAAGAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCCAAAAAAATAAGTCGAAGATA
GAAGAGCCCAGATTCAAAATGAAGAAATGGAAACTCGAAAAGGAT
Found at i:433484 original size:14 final size:14
Alignment explanation
Indices: 433465--433497 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
433455 ATACTAATAT
433465 ATAGATATATAGAA
1 ATAGATATATAGAA
*
433479 ATAGATATCTAGAA
1 ATAGATATATAGAA
433493 ATAGA
1 ATAGA
433498 AACGAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.55, C:0.03, G:0.15, T:0.27
Consensus pattern (14 bp):
ATAGATATATAGAA
Left flanking sequence: Indices 432965 -- 433464
TTCAAGAGTTTCTATCTGTTTCCACGCCCTTTTTTTGAGACCTCGAAACATGAAATGGACAAATT
CCTTCTCTTAGGAACACATACAAGAAAAAGGATAATGGTAGCCCTCCCATTAACTACTTCATTTT
CATTTATGAATTTCATAGTAATAGAAATCCATGTCCTACCGAGACAGAATTTCGAACTTGCTATC
CTCTTGCCTAATAGGCAAAGATTGACCTCTGTAGAAAGACTGATTCATTCGGATCGATATGAGGA
CCCAACTCCGTTGCATTGCCAGAATCCATGTTCCATATTTGAAGTGGGTTGACCTCTGTGCTTCT
CTCATGGTACAATCCTCTTCCTGCTGAGCCCCCTTTCTCCTCGGTCCACAGAGAAAAAATGTAGG
ACTGGTGCCGACAGTTCATCACGGAAGAAAGAACTCACAGAGCCGGGATCGCTAACTAATAGAAT
AGTACTACTAACTAATACTAATATATAGATAACTAATACTAATAT
Right flanking sequence: Indices 433498 -- 433997
AACGAACTAATATATAGATAATCGAAATTGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGTTC
TATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGG
TCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAAGCCAGTTAGAAAATGGATTCCTATTT
GAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATT
TTTCTTGGGAAGTTTCGGGAAGAAATTGGAATGGAATAATATCGATTCATACAGAGGAAAAAGTT
CTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGAAGAGGGAAAAATCGAAATGAA
ATAAATAAAGAATAAAGCCAAAAAAATAAGTCGAAGATAGAAGAGCCCAGATTCAAAATGAAGAA
ATGGAAACTCGAAAAGGATCCTTCTGATTCTCAAAGAATGAGGGG
Found at i:444983 original size:14 final size:14
Alignment explanation
Indices: 444964--444993 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
444954 TTGGGTGAGG
444964 GCAGATTCAACAAT
1 GCAGATTCAACAAT
444978 GCAGATTCAACAAT
1 GCAGATTCAACAAT
444992 GC
1 GC
444994 CTCTTTCCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (14 bp):
GCAGATTCAACAAT
Left flanking sequence: Indices 444464 -- 444963
CAATATGTCTCTATTGGCTAAACAATAGCCCTTGTAAAAACAACTATACCTGTCTCTGCCCGTGA
AAACGAAAAAACAAATCAACTACGGCTCCCTCAACGTACTCACTTGTTGACCTATCCAGCTTATC
CAACTACTTGACCTAAACCATATGGATATACCGGTACTGCACCGTTACGCAAAAATGAACTCCTT
TTTATAGTGGGCCTATGTCTTGTATCCGTTACTTGGTCGTTCAAATCACACAACCCATACCTAAC
TCCTGTTTAGAAACCTGTGCTTGCCAGCTTATCCTTTTTAGAAATATGCCTATTCCTTTACCTGA
GCAAGGTATATAGAGGTAGTCACTCATTGCCAGAACTACTACTAAATGCCAATGCTAGTGCTAAG
CTTCAAGTACTACTCAGAAATCTTATGCATAGGAAATCCTATCTATATAGATAGTGGTTTCGTTA
TCCTCAAGTCACTCAATAAACTCTTTCCTACTTGGTTGGGTGAGG
Right flanking sequence: Indices 444994 -- 445493
CTCTTTCCTCTCTGGCAAGGGTCATTCCATTGATACGCTCATCGGGCTGCTCGTCGTTAGGAAGA
GAAAGTCCTACTGCTGTGCCATTCTTGTGTTGAACAGAAAGTAGCTTATTAGCTGATAAGCACTA
GCTGAGGCATCTAGCTGATGGGGGAATCTATATAGAAGGAATAGAATTCACCATTTGGATCGCCA
TCCTTCATGTTTGTTATAACCTGCCAAGCTGCCATAAACTGAAAAGGGTTTCTTGCCCTATAAGC
ATGTAAACATAACAACTCTGAACTATATTCCTGATAAGGAAGAATCATTTAATTCCAGAAATTCC
TTTGCAAATTGAACTGTTTCCGAACAAGCTTAGGATGTAGTTTTGAGAAATCCCTTGCTTTGACT
CTCTCTCTCTTCTTCTCTGCCAAGCCTACAACTATTACTTTATCAGATGACAATACTACTATTAC
TTCCTCGGAGGAGTTAGATTCCTTTTTTGAATATGTAAAGGGCTG
Found at i:480385 original size:23 final size:23
Alignment explanation
Indices: 480359--480404 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
480349 GAACTACCTT
480359 AGATCCGACTAATTCCCGACTAG
1 AGATCCGACTAATTCCCGACTAG
480382 AGATCCGACTAATTCCCGACTAG
1 AGATCCGACTAATTCCCGACTAG
480405 TTCCTTCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.22
Consensus pattern (23 bp):
AGATCCGACTAATTCCCGACTAG
Left flanking sequence: Indices 479859 -- 480358
TACCCCTAAGTTCATTTCCAATTCCCACATACAGTCTAGTTCCTTTCATGAGTAGTCCATCTTTT
TCTTGCCATTCAGCCGGCTTGTCCTTCACTTTCTCAAGCTCCTCTTTATTTCACTTTCAAGGCCA
TTTCGTAGCTATTTATAACCTCCTGAACCCACTCGGGCACCACTATGCTTATGGCCGCGCATGTA
TCCACTTCTTTAGGCCTAACCTTTCTCGATAAAGAATCTGCCACTTTGTTTGCGGCTCCTTTCTT
GTACTCTATCACTCCAGTCCAATAAACTTGGTTAGGGCTTTGAATTGTAAATCTTTGCTCAAGGA
GGTATTTTATACTTTGGTGATCGGTCTTGATGACAAACGGCCTAAGTTGCAAGTAATGTCTCCTT
TTTGTAATATCCATGAGTATGGCCATTAGCTCTTTCTCGTACACTGACAAGCCCAAACTCCTCTC
TTCCCAGGAAAGAACTAACTTATCTGCCAAAGCAAGAACTACCTT
Right flanking sequence: Indices 480405 -- 480904
TTCCTTCGATCTAGCTGGAACTCGTAATTCCTATCTTGAACAACAAAGAAAAATCAATAAGGTTC
ACGTAAGGTTCTTAATAGGCAGTAGGCGAATCCCGTAAACCAATGAGCCCTGATGGCGTTTTCAT
TCGCCCTTTCGATCAATCCAATCCAGATTACGTCCTAAGCATGGTTTCTATGGCAGGAATTCTAC
GAAATCTAGGAGGGAACGGAACTCGTTAGAAATCCCAAGAACGGCTCCCAACTCTCCTTTGGGAA
AGGGGTTCTCCTTGTTAGTAGGAATTGTTTGAAACTAAGTCAGTTGATTTATTCCTCAAGTAAGT
CAGTTGATTTATGCGAATAGTAGGATTAACTAGACTATCATAGTAGAGCTTCCTTGACCGACTTT
TCAATTCTCTTGTTGATTTCTCAGGTAGGCCAGCTTTCTTCTCTTTTCAGTGAGTGATGCCCTGG
CTGGGTATCAGGAACGGATACTAGTCTTCCTACCTTAAACATTCA
Found at i:485022 original size:23 final size:23
Alignment explanation
Indices: 484992--485035 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
484982 ATTTCATTCT
484992 ATCCGACTAATTCCCGACTAGAG
1 ATCCGACTAATTCCCGACTAGAG
485015 ATCCGACTAATTCCCGACTAG
1 ATCCGACTAATTCCCGACTAG
485036 TTCCTTCGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.23
Consensus pattern (23 bp):
ATCCGACTAATTCCCGACTAGAG
Left flanking sequence: Indices 484492 -- 484991
GGAAGGTGGGAATTGGCAAGAATAGTCTTAAGTTGACTCTCTGGCAAGGAAGCCATGATTCGTTA
CTGATAAGAAAACCCTCATTCGTGATACCCATTAAGGGCATCCCGAACTCCATTCTTTTAGGCTA
GCTTTTGGACCTTTTTTATCAGATTGCACCCATATGTATTTGAGATCAAGTCATACTCGTCCAGT
CCATGAATTTATGCCTTATAGTTCATGCATGCATTTCCAGGTCTATGTGCAATCTCACATTCAGA
TCAATGAGTACCGTGATCGTTTTATTTTGGTGAGTGATCAATTAAAGCTCCATGGACAATTAGAT
AACTTCTATGAATTTTCTTAACACATGTATTTGCTCACTTTTGTTTCGTCTAGCCTATGGTGACA
AAGAAGTATGGGGACCTATTACCACCTGTATAAAGGTTCTCGATATGACCGGTCTGAAATTGTCA
GCACTAAACCAAATGAAGGTACAGCCTGCGATATCATTTCATTCT
Right flanking sequence: Indices 485036 -- 485535
TTCCTTCGATCTAGCTGGAACTCGTAATTCCTATCTTGAACAAGACCAGCTTTAAATGCATTTTT
CACAAGGAACAACTTGAACAATCCATGATAGGAGAACTGATTGAACAAGGAAGCAAGCAAAGAAG
AAGGAAAGTATTGGAATTCTCTTGTTGCCGAAGCGTAGGCCAGCTTTTTGGAGTGAAAATAAGGA
GTGCCCGGCCATCTAAAGTGCCAGTCTAAGTTCCCCTCCAGGCTGCAGGGTAAAGGGCAGACACA
GGTTCAGAGCGAGGGGAAAGGATCAAGGGATACCCAAGCCATACCAATCATTACCCGGTATGGAG
GGATAAAGCATCAAATTGTATTTTCCTTACTCCTGTGGGCCTATGATTTCTTTTCTTCGTCATAA
ACGATATCCGCTGACTCAAGCATCTTCCCCCAAGCCCTTGCCATTAAGCTAATATCTCCCTTGCC
ATTAATTCAACAAGGCTTCCGAGAAAGATCAAGACCAAAATGAAG
Found at i:487709 original size:20 final size:20
Alignment explanation
Indices: 487684--487723 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
487674 ACAAACTCAA
*
487684 ACCGTTAAATAGTTTACTTC
1 ACCGTTAAATAGTTGACTTC
487704 ACCGTTAAATAGTTGACTTC
1 ACCGTTAAATAGTTGACTTC
487724 TTTGATTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (20 bp):
ACCGTTAAATAGTTGACTTC
Left flanking sequence: Indices 487184 -- 487683
AAGAACGAATCGGACCTGCCAATAAGAATAAGACATAGATTTTTCAGAATAGTATCTACTTGCCT
TTCCTTTTTATAAATATTGATACTTGAACATCAAATAATTAAGATTATAGTATCCGACCTTGGAT
TTCCCAGATAATCAACACGGGTGCTTCATAGCGATGGAGTTCGTGATACCCATTAAGGGCATCCC
TCACTCTATTCTTTCTGTTCTCGGATTGCTTTATAGAGAATTGTGAATAGAAAGAGAAGGCAATT
CAAACCTAATGGCCAAACATTACGAATCCAAGACAGAAAGAGAAGGCATGGGCTGGAATGAGTTC
TTGAACGAAGGATAGACCAGGAAGGAGAGTGGAAATAGCTCAAACAGTGGATTGATGTTCCAAGA
ACTAGGTGTGTTATCGAAAAGTAATCTCTGTCTGGGTTAGACCTTTTTGGAGTAATAGAATGTAT
AGTCGAGGAATACAAAACAGAAGTGGTTCAAGCTGACAAACTCAA
Right flanking sequence: Indices 487724 -- 488223
TTTGATTAAGGAAAGACGATGTCAACTGTTAGCTATGAATGTTTAAGGTAGGAAGACTAGTATCC
GTTCCTGATACCCAGCCAGGGCATCACTCACTGAAAAGAGAAGAAAGCAGGCAAGGATCAAGTAA
CCAACATGTTGCGGAGCAGCCAAGTAAACCAAGAAATGACTCAAGTAATCCAAGGGCAGAGCAAC
GTAATCCAACAGAGGGGCTACGTGATCCAACAGAAGAGCTACGTAAACAAGGAACACATGAACCT
GCTAAGGATCCATTCCACCTGCCAAGTAGACCAATCACAAGAGCTCGGGCCAAGAAATTCAATGA
AGTAATCCATATCCATATGCTGATTCAGCAAGCCAAGCAAGAGGATGCGCGTTAGCGCAACTTCG
CGCTAGTTGCTCAAAAAATCGTATAAAAATCAAGCAAGAAAAAGGGCAGGCTGCGTGGGACTGTA
AATCCTCTTTCGCTGGCTGGGCCCTTTGGACTCTAAATCCAAACG
Found at i:487941 original size:21 final size:21
Alignment explanation
Indices: 487911--487964 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
487901 ATCCAAGGGC
*
487911 AGAGCAACGTAATCCAACAGA
1 AGAGCTACGTAATCCAACAGA
* * *
487932 GGGGCTACGTGATCCAACAGA
1 AGAGCTACGTAATCCAACAGA
487953 AGAGCTACGTAA
1 AGAGCTACGTAA
487965 ACAAGGAACA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.39, C:0.22, G:0.26, T:0.13
Consensus pattern (21 bp):
AGAGCTACGTAATCCAACAGA
Left flanking sequence: Indices 487411 -- 487910
ATAGAGAATTGTGAATAGAAAGAGAAGGCAATTCAAACCTAATGGCCAAACATTACGAATCCAAG
ACAGAAAGAGAAGGCATGGGCTGGAATGAGTTCTTGAACGAAGGATAGACCAGGAAGGAGAGTGG
AAATAGCTCAAACAGTGGATTGATGTTCCAAGAACTAGGTGTGTTATCGAAAAGTAATCTCTGTC
TGGGTTAGACCTTTTTGGAGTAATAGAATGTATAGTCGAGGAATACAAAACAGAAGTGGTTCAAG
CTGACAAACTCAAACCGTTAAATAGTTTACTTCACCGTTAAATAGTTGACTTCTTTGATTAAGGA
AAGACGATGTCAACTGTTAGCTATGAATGTTTAAGGTAGGAAGACTAGTATCCGTTCCTGATACC
CAGCCAGGGCATCACTCACTGAAAAGAGAAGAAAGCAGGCAAGGATCAAGTAACCAACATGTTGC
GGAGCAGCCAAGTAAACCAAGAAATGACTCAAGTAATCCAAGGGC
Right flanking sequence: Indices 487965 -- 488464
ACAAGGAACACATGAACCTGCTAAGGATCCATTCCACCTGCCAAGTAGACCAATCACAAGAGCTC
GGGCCAAGAAATTCAATGAAGTAATCCATATCCATATGCTGATTCAGCAAGCCAAGCAAGAGGAT
GCGCGTTAGCGCAACTTCGCGCTAGTTGCTCAAAAAATCGTATAAAAATCAAGCAAGAAAAAGGG
CAGGCTGCGTGGGACTGTAAATCCTCTTTCGCTGGCTGGGCCCTTTGGACTCTAAATCCAAACGG
AGTGAGTGGTTCGATTCCACTCTCAGAACGAGACTGAACGAAAGAAAATGCAAGTGAAACGAGAC
GAGAATCTTCGATTGGGAAGTGCACTTAACCCACCCACCTAAACCGGATCAGGAAAAGTGTTTAG
TACGTGCCAATAAAAATCTTCACCTGCGAAACCTTTCTATCTTTGTTCTTCCCACTTTTGCGCTT
TCGAACTACTGGTTAGGTCATCACCTTTCTTTGATGTTTACACTT
Found at i:507537 original size:18 final size:17
Alignment explanation
Indices: 507514--507577 Score: 92
Period size: 18 Copynumber: 3.6 Consensus size: 17
507504 GTGGTGGGAT
507514 ACAGATAGGGCTGCGCAC
1 ACAGATA-GGCTGCGCAC
*
507532 ACAGATAGGCGAGCGCAC
1 ACAGATAGGC-TGCGCAC
507550 ACAGATAGGCTAGCGCAC
1 ACAGATAGGCT-GCGCAC
507568 ACAGATAGGC
1 ACAGATAGGC
507578 GAGGGTTTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.07
18 39 0.93
ACGTcount: A:0.33, C:0.27, G:0.31, T:0.09
Consensus pattern (17 bp):
ACAGATAGGCTGCGCAC
Left flanking sequence: Indices 507014 -- 507513
ATACCCGGTCATTGGCAACATCTTCTAACTCGTTAAGCGCAAATAGCCTAGATCAGATCACTCTA
ATCTCTAACTCAAGTTATTAGCCCCCCTACTGACTACCGGGGTATCCTCTAATGAGCAAGCACAA
GCACTTTTCCAACAGCTCGCATTCGCGAGACATATGCTATATCTGAATTGGGTCTATCAGACACC
ATCACCTCCCCCTTTTTTCGCCCAGAGACTACCTTTTCTCTGATTCCACTTTCTATTTCAGGCAA
ATAGGTGATCTATCAAGCTTAGCCTTTAGAGCGAGGATTGGGCTTGGAAGAGGTTCTTCACTTCA
TCAAGACGTCCTCCTTTGAATCCTAGACCGACTTCTGAGTTATTCCAGAACCTTATGCTCTTGCT
TTTTGACTAGCTGCTGATGCTTGCGGGGAGGCCATATTTAGTACGGGAACACAGGTGCCTACCTT
ATAGAGGCAAGGTCGGATGGAATATCTGATTAGAGGTGGTGGGAT
Right flanking sequence: Indices 507578 -- 508077
GAGGGTTTAATGATTTCAAGTTATATATCACATAGAGCTGCTAGTTTGTGCTTATATAGCTAGCA
AGCAGGGTGAGATATGAGAGTGGAATTAGGCCAAATAAACACGTGTTTAGAGAATAATCAATGAC
CAGCTGCGGATGCTGGCAGGGATTTTCTATAATGGAATCGCTCGCTTCGCCTAGTTTGACTAGGA
ACTAATCAATGACAAGCTGCGGATGCTCTTGCATTGGTTATCTAATTGAATTCAATGACATTCGG
ATGCAGGTAAACAAAACTTAGTCTGAGAAGATACAGATGAGCCACATTAGAACTAAGGAGCTAAA
TCATTGACTCTACACCAGCCTTGCTTATTTTCTTGTTTGTTATTCCGAATTCCTTGTCAATGTAG
AGTGCACTTGCTCGCCGTCGGGTGAGGGAAGAGTGTTGATACCCTCTTTCACAGGTATATTAATA
TAGAGGATTTTTCCAAAGCCCAGCTTGTCAAAGAGCTTGAGTCAG
Found at i:507570 original size:20 final size:18
Alignment explanation
Indices: 507526--507580 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
507516 AGATAGGGCT
507526 GCGCACACAGATAGGCGA
1 GCGCACACAGATAGGCGA
*
507544 GCGCACACAGATAGGCTA
1 GCGCACACAGATAGGCGA
507562 GCGCACACAGATAGGCGA
1 GCGCACACAGATAGGCGA
507580 G
1 G
507581 GGTTTAATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.33, C:0.27, G:0.33, T:0.07
Consensus pattern (18 bp):
GCGCACACAGATAGGCGA
Left flanking sequence: Indices 507026 -- 507525
TGGCAACATCTTCTAACTCGTTAAGCGCAAATAGCCTAGATCAGATCACTCTAATCTCTAACTCA
AGTTATTAGCCCCCCTACTGACTACCGGGGTATCCTCTAATGAGCAAGCACAAGCACTTTTCCAA
CAGCTCGCATTCGCGAGACATATGCTATATCTGAATTGGGTCTATCAGACACCATCACCTCCCCC
TTTTTTCGCCCAGAGACTACCTTTTCTCTGATTCCACTTTCTATTTCAGGCAAATAGGTGATCTA
TCAAGCTTAGCCTTTAGAGCGAGGATTGGGCTTGGAAGAGGTTCTTCACTTCATCAAGACGTCCT
CCTTTGAATCCTAGACCGACTTCTGAGTTATTCCAGAACCTTATGCTCTTGCTTTTTGACTAGCT
GCTGATGCTTGCGGGGAGGCCATATTTAGTACGGGAACACAGGTGCCTACCTTATAGAGGCAAGG
TCGGATGGAATATCTGATTAGAGGTGGTGGGATACAGATAGGGCT
Right flanking sequence: Indices 507581 -- 508080
GGTTTAATGATTTCAAGTTATATATCACATAGAGCTGCTAGTTTGTGCTTATATAGCTAGCAAGC
AGGGTGAGATATGAGAGTGGAATTAGGCCAAATAAACACGTGTTTAGAGAATAATCAATGACCAG
CTGCGGATGCTGGCAGGGATTTTCTATAATGGAATCGCTCGCTTCGCCTAGTTTGACTAGGAACT
AATCAATGACAAGCTGCGGATGCTCTTGCATTGGTTATCTAATTGAATTCAATGACATTCGGATG
CAGGTAAACAAAACTTAGTCTGAGAAGATACAGATGAGCCACATTAGAACTAAGGAGCTAAATCA
TTGACTCTACACCAGCCTTGCTTATTTTCTTGTTTGTTATTCCGAATTCCTTGTCAATGTAGAGT
GCACTTGCTCGCCGTCGGGTGAGGGAAGAGTGTTGATACCCTCTTTCACAGGTATATTAATATAG
AGGATTTTTCCAAAGCCCAGCTTGTCAAAGAGCTTGAGTCAGCAT
Found at i:528324 original size:13 final size:13
Alignment explanation
Indices: 528306--528331 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
528296 TTTATCTCCT
528306 AACCTAAGTAGTA
1 AACCTAAGTAGTA
528319 AACCTAAGTAGTA
1 AACCTAAGTAGTA
528332 GTAGTAGTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (13 bp):
AACCTAAGTAGTA
Left flanking sequence: Indices 527806 -- 528305
CAAAGTAGGTAAGAGAAGGAGGCTTTCACTATTATTATATTAAGAGTAGGGCTTTAATGAAAAGA
GTAGGCCCTTCGTATCTTTCTATGACCTCCAAGACGGAGCGAGACGGATAGGCAGAGCAAGAGCT
CTTAAAGTCTACCCTACCCGGGCTAGCTTCTTCATTCTTCGATCAGGGGCGGGCTTCTTCCCTTA
TATACGATGACATAGATAGAGCCTCCTTCTTTGATCCATTCATTGATAAAGTAGTCTTCGGGTTT
ACCTTTTGAATCGACAGTAGAGTAGGTTTGATCTTGCTTTCTCAATCTTTCTCTGATCCTAGCCG
TGTAGTAGATCCGGCTTTATTCGGCTAAAAAGAAGTGTGTGGCCGTCGTATCTGCTCGCCCCCTT
CTTCATTCATCCATTTAGGTCAGAATGGATCCAGGGAACCTGGCTCGGGAACAGCCCTGAAAAAA
CACAGTAAGAGAGTCCAATCTCTGAAATATAGCATTTTATCTCCT
Right flanking sequence: Indices 528332 -- 528831
GTAGTAGTAGAAGGCTTAGTATCTGACTTGATCCAATAGAGTCAGAACACACAGTAGATCCAGAT
TCCACACCTTGCTGTGGACTGGGGAGAGAGCAGCTCTGCGAAGCTGGGCGTTCTGTGTGATTATG
GAGGAACTGTAGTACTCGCCCCAAAATGCAAGCCGGGATAGATACTTAAAGAAAGGGGGAGCGGT
GGGCCTTCAAAAAGGAGCGAGGGAGTGATGGGCAACCTTAGTCTATATGTTGCTCGTGAGCCGCC
AAGTACCAGTCTCGCAACAGTACTGGCGTTAAAGGATCGGTCCTTCACTTGCGGATCGTTCGCGA
GTCGAACTCGCTCTCTTGCCACGCCTTTGACCCACGAACTCGAGTCGGACTCATTCACTGCTGAC
TGAGGATCGTTCGTTCTTCACTCTCTTGCTATTACCCGCAGGGAGCGCAGCAACCGACGGTGCAT
ATTATCATATAGAAAGAAGCGAAGCGTAGCGATTCGTACTACCGG
Found at i:530249 original size:11 final size:11
Alignment explanation
Indices: 530233--530260 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
530223 GGGAATAATC
530233 TCTTTCTTATT
1 TCTTTCTTATT
530244 TCTTTCTTATT
1 TCTTTCTTATT
530255 TCTTTC
1 TCTTTC
530261 CCATGACGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (11 bp):
TCTTTCTTATT
Left flanking sequence: Indices 529733 -- 530232
TGAGGCTTGGCAGGATGGGAGTGAATTAAGGTCGAGGGAGCAGGAAAGAGTTTGTTATTCGCTAT
TGGCTTAGTACGGCCTATACATAATAGGGCCATGACGGTTTTGGCAAGGCCTTGAACTTCATATA
TCCCTTTTTTACTCAATCCAGAATACCGATAAAGTCAGATTGAATCATTTTATCGACCTTTCCTT
TGGATTTATTATCATAGGTAGTGTTCGAGATCGCCTCTGCGCGGTGAACGCTCGAATGTAGCTAA
CATCAGTTTTGTCCTCGCGTGGTTGAAGGAGATGCTGCTGCTGGATGGAATGCTTCCGGGGCGCC
ATGATCCTTCTATCAGGAATAATCGAGGGCACTGACTGACTGCATCAATCATCGCTCAGTGAGCT
ATTAATTGCCGCCAATAGCGCTTCGCTTGCATGCAAGGCGGCTAATAAAAGCGCCAGCGCGCGGA
GATGCATTTTGAAGGTGGTACTGGACAAGCTCTAGGGGAATAATC
Right flanking sequence: Indices 530261 -- 530760
CCATGACGACTAGGAACGGGCAAATCAAGAATTTCACTTCGAATTCCGGACCTCAACATCCTGCT
GCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACA
TATTGGATCACTCCAGTGCGGCACGAAGCCGCTGACGCTGAGTAGGCTCCTATGCCGCTAGCACG
GTGGAGTAGCGCGTCATGAGCACCGGGCAAAGGGACGGTTGAGCAACTCAAGCGAACCGCTCTAC
CTGACTTTGGATAAAGATAGAAGGGAGAAGGTTGTGAAGGTGGCCTCGTTATCCACACATCTGGT
CGGAGGACCGACCTGGGTTTTCACGAGCGTAGGCGGGTCCTGGAGTGCCCGTCAAGGGCGCTAGC
GCATACCCCGGGGTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGTAACCCG
CCTGCTGTCCAAGTCAACCACTTAATTTCCTGTAATTCATAGCGC
Found at i:535628 original size:6 final size:6
Alignment explanation
Indices: 535617--535651 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
535607 TACTTACTTT
535617 ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG -TTAAG
1 ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG
535652 GGGCAAAGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (6 bp):
ATTAAG
Left flanking sequence: Indices 535117 -- 535616
TTCGGCTCCGCGCACTGGGAAAAGGCTTCCGCGACAGGAAACCGGCTACTAGTTAGGAAGTGAAC
ATAAGGTATCAAGAGGTCCCTCACAGTCAGGTGCGATGCAATTGCCCCCTATTAGTCAAGTACCC
CTCTTCCTATTTTGTTTAGGGGTTAAAATGATGAACCCTTCCGTTCACACGCACCGGCCCCATTC
ACTTGCAACTCGTAGAGGCTGTAAGTAAACAGTGCCCCACTAAATTCAAAGTGACGGTGGGGTTG
AAAGACGAGAGTGCCTACCCCCGAGCCGAGAGTGCCCGCCCTTTCTGTCAAGTAGGCTACTTTTT
CCGGAACGCAGTCCGGAATAAGCGTTCCTGTGTATATAGATATCTTCGATGCTGTCATTTCGAAA
TGTCCGCTTCCTCTTTCACCTCCCAAAAAGCAAAGTTGGCTTGACGAGCGCAGATGAGGAAGCGG
GAGCAATAAAACCAAGAATCTCTTTCTTTTCCAAATACTTACTTT
Right flanking sequence: Indices 535652 -- 536151
GGGCAAAGAGAAGCGCTTTCGCTACTGAGAAAGCGAATGGTCAGCGCGAGGGTTCGACGACTTAG
CCGAGCGTTAGCGAAGCGTCATTCTCATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGC
GTCGGAGACTATGTGCTATAATGCTGAACTAAGGACGTTCCGCCTTATCTATAGAAGCAGTCAAC
TGAGTTCTGAACGAATGGGATCCTTGGTGGGTAATGGCTCAATCAATCTATAGATGGAAAGCCTT
ATGATGGGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCTGTTATAGTTTAGGGGGAGCAG
ATGCAAGCTTTTTCTTTCCATAGCCGGCCAAATGACTACCGGATCATCGGTCTACTCTACCTCAA
TTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTCCTTCTACCTATACCGCAGTT
GAAGCACCTAAAGGTGAATTTGGTGTCTTTCTTGTCAGTAATGGG
Done.