Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_053921
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1045106
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Found at i:58960 original size:15 final size:15
Alignment explanation
Indices: 58936--58966 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
58926 GATATGGTCC
58936 AATCCCGCTCTGTCT
1 AATCCCGCTCTGTCT
*
58951 AATCCTGCTCTGTCT
1 AATCCCGCTCTGTCT
58966 A
1 A
58967 GAGTAAGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.35, G:0.13, T:0.35
Consensus pattern (15 bp):
AATCCCGCTCTGTCT
Left flanking sequence: Indices 58436 -- 58935
TTTGTAAAAAAGAGTATCTGCTCAACCAAGTTGTATTACTTCCTCACCAATAACCAGTCAATAAA
ATAAATGGAAGGTAGTCAAAGATGCGATTTGCTGCTTTTAAACCGATCACTCGATACAACTGGTT
GGGGATCTACATCCAGGTCTTTTGCCAATTCTCTTAATTAGTCTATTATCTTCTATATCTATTAG
GCGATTCAATTAGTTTTCGATAAATGGGCTATCAAGCTCGAGATCGTGATTTTAAATCGCCTCAC
GCGCCGGTTGATTGAAAATCGGTTTTTATTATTGAAACCAGGGTTCTTATAAGAAGTGGTGGTTA
TATACATAACTCCGAACTCTATTTGGCCGGTTAACTTATTCTCCGCAACTCCCTTGTATTTTCAA
TCAATGTCTTGTTGTACGGGCCCAATCGATCCAAAGAACAAGGGGTAACGGGTCGCTGGGCGTTA
AAGAGCATATGCTCCTGGTCTCGTTGGCGTTATCAGATATGGTCC
Right flanking sequence: Indices 58967 -- 59466
GAGTAAGAGTAATGGTAAAGGAACCCGCCTTGAAGTTTCCCTACAGGCGACTTCCCCTTGTCCTG
AAAGGTAGTGAGATGCCCCTCGCGCCACATTAGGAATGGAAGAAGCAGTTTCCTTTCAGTGCCCT
GTGCTGGTTGTTCTTGAATTGCCTAATTGAAAAGTTAACAAGGAAAGGGGCCTGGTCCGCTGTTC
GAAGTCGATGGATGATCCCGCCTGCTTTATATAATATATAATATCCTGGTATGGTGAAAGATTTA
TTAACATACTGGCATTTAATCAAACACCGCCATCTACCCCCAGGTATAGGTAAAAAGTAGATTTT
TTACTTTTTTACAGCAAATCGGATGACTTAAACTCAATAGATCAAACAACAAAGAGCTACTTCGG
GCATTCACCCCCGAGAGCGGCAGCCGGCGGTGCAGGACTAGCTAGTCAATCAGCTCCTTTAGAAG
AGGATGCACACTCAGGCACTCTTACAGACTCGCTTGTGAAAGAAT
Found at i:131702 original size:57 final size:57
Alignment explanation
Indices: 131585--131702 Score: 157
Period size: 57 Copynumber: 2.1 Consensus size: 57
131575 TCAAGGGGGC
* * * ** * *
131585 TTTGAGCGGTAACGTCAGTTGGGGGCTTTTGGCAAGGAGCGTCTTGAGCCTTGGGCT
1 TTTGAGCGGTAACGTCAGTTGGCGGCTTTTGCCAAGGAACGTCCGGAGCCTCGGGAT
131642 TTTGAGCGGTAACGTCAGTTGGCGGCTTTTGCCAAGGAACGTCCGGAG-CTCGCGGAT
1 TTTGAGCGGTAACGTCAGTTGGCGGCTTTTGCCAAGGAACGTCCGGAGCCTCG-GGAT
131699 TTTG
1 TTTG
131703 GCAATGACAA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
56 3 0.06
57 50 0.94
ACGTcount: A:0.15, C:0.19, G:0.36, T:0.29
Consensus pattern (57 bp):
TTTGAGCGGTAACGTCAGTTGGCGGCTTTTGCCAAGGAACGTCCGGAGCCTCGGGAT
Left flanking sequence: Indices 131085 -- 131584
CCGCGCTTCTATAAGAAGCAGATCAGGATTAGTACCTGCGGGGGACTTTGCTATTTTTCGCCTCA
AAAGATGTTCTTCCATCTGACGACGGAGCTCAACCTCTTCCTGCGGTAGAACCTGTTCTTCCTGC
GGCGGTTCCGAGGTTGAGGAAGGCTCATCTGACGGAGGCAGATTGAGATTGAAAGAAGGCTCATC
CGCTGGAGGAAAATTTAGATCAATGGACGGCCGGGGCCTTGCACCGCCCCCAACGTAAAGAGTGG
GGTTTCCGCTCCCCTCCATGAAAGAGAAGACCCATTCGACACAATGAGTCCCCAGGGTAGCCACC
TTCCATCCCCAACCGAGCCGACTAAAGAGGCAGCGGAGGCACTTACGGAAAATGGTTCGCATGAG
GATCCAGCGTGGATCAAAATTGAACAAATCGATCACGCAGCAAATAAAAAAATAAAAGTCTCCTA
TCTTCAGAGGAATCAATGGGACAATGGAAAATTGATCAAGGGGGC
Right flanking sequence: Indices 131703 -- 132202
GCAATGACAAGGCGGATAAGCAACGCTGATGGACACCTTTTTCCAATTTTTGGAGTAATTTATTG
GCAGCCCAACCTGGCGATTATGAAAAAGCACCTGGTCTCCCTGGATACGCCCGTCCAAACGCTCC
CTTTGAATAACTTTTAGTATAAAAAATCTTAGTAATAGAACTATAAATATTAATAACAGCAGGAA
CAGCCAGACCTGTGCATTTGACAGGTTTTTTATTAAGGCACAAATTACCGTAAAAACAGATTCCA
TACCAAAATATCCGTCCATATAGAAAAGCAAGTAGTTCTTACCATCCGAGTAGTGAAGAACTATA
TAAAGTGATAGTGATTGGTTATTGACCAACGAAAGCATGGGAGAAAGAAAGATGCACAAACGAAA
AAGAACCCTAGCGCCTTCTAAAGACCGAAGGCCCGCATGAAAATGAAGAAACTCCGGAGCTAACC
GAGGCAAGGAACTGTCCACTGAGCACTGACTCAATCTAAAATCGT
Found at i:139264 original size:22 final size:22
Alignment explanation
Indices: 139221--139265 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
139211 CCATGCCAAA
* *
139221 CTTCTTTGCTTGCCTGGTCTTT
1 CTTCTTTGATTGCCTGGCCTTT
139243 CTTCTTT-ATTGCCTTGGCCTTT
1 CTTCTTTGATTGCC-TGGCCTTT
139265 C
1 C
139266 ACCGGATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.02, C:0.29, G:0.16, T:0.53
Consensus pattern (22 bp):
CTTCTTTGATTGCCTGGCCTTT
Left flanking sequence: Indices 138721 -- 139220
TTTTGGGTATATAGATAGAGAGGGCCTGCCCGTAGATTTGTATCCCGTGGTGGCTATAGTATTAA
CACTTTTTTTTTCCTGATTAGATTCTTCCTTTGATGTATGCAAGAGCTTCCATGAAGTTCATGGT
CTATCTTTCCGCTTATCCCGATTGGTCACTTGCTTTCGACTTCCCTTACTTCTATCGCCCTATCT
AGTAAGAGGGCTTTAAACTGAATCCCTAGCTTGGTTCCTGATGTTCTCCTTTCACTTCGAGCTAA
CGAGCTAAGAAGTCGTTGATTCCCTTCTTCATTATCAATCAGTCCGGGTGGACCCCTCCTATCCG
TCTATAGTACCAGAATATCCCGGCCAAGGCTATCCAACCGATTCATTCACTAAGAGATTCTAAGA
CAGAGAAGACGCTCAGGTGTAAACGAAAGCGGTCAAAGCCGCTGCAAAGAAAAGTCCCTTACCGA
AGAAAGCAACAAACGATCTTTTGGCCCTTCCGAATCCATGCCAAA
Right flanking sequence: Indices 139266 -- 139765
ACCGGATATGGGATCGATCCCTTCCACCATTCCTCCAACAGATGCGGATGAATTAGCTGCCGTTA
TTCTTTCAACATTTGCAGAGCTAACCCCTGAAGTGACTTCAGTCCCGTGTTAGAGCTAACTGCTG
CTTCTTCTATAGCAAGTGCCGAGCAGGAATCACTGCTTATTCGACCGGTAATGCCGTATGCCCGG
CTATGAAAACCAATCCACCCAAGGCAAGGAGAAAGACAGCTGAACAAGACCATGCGGATAAGAGA
AGAGTTGTGATTAGATTTCATCACAAGAAAGCTCTATGCTAGGCTCTCCTGGAATCGCTTTCAGG
CAATCACATTCTATTCAGATAGAAGAATTACACCATGAATAGCGGTCGGTACAAGAGATCTAGTA
AGAGCCTTAGCTTGACTACAGGGATTTCACTCTCACTCGAAGGAAGGCATTCTGTAAGGTAAGAT
GTGAATTCTGCTTTCCCTCTCCGTTGAATGAACTAACTACGGGGC
Found at i:201605 original size:18 final size:18
Alignment explanation
Indices: 201565--201607 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
201555 ACTGCCCTGC
201565 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
201584 -ATAGTCGCGA-CTGTTTT
1 CATAGTCGCGAGCTG-TTT
201601 CATAGTC
1 CATAGTC
201608 AACAAGGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 3 0.14
17 3 0.14
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 201065 -- 201564
GAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCT
GTCTGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTTCCCCCTCTTCCCCTCACTCTCCTTTCC
CTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACT
GGCGATTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGGGGCGGACACTTTTTGTTATCTAAAGG
CGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGC
ACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTGAGAATGTGTCGTTCAGCG
TCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACTGCCCTGC
Right flanking sequence: Indices 201608 -- 202107
AACAAGGCTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGCCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:222592 original size:21 final size:20
Alignment explanation
Indices: 222566--222617 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
222556 CAAACCCTAT
*
222566 AGAATAGGTTGGTACAACCAG
1 AGAATAGGTTGCTAC-ACCAG
* **
222587 AGAATAAGTTGCTACACGTG
1 AGAATAGGTTGCTACACCAG
222607 AGAATAGGTTG
1 AGAATAGGTTG
222618 TGGATTGATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.23
Consensus pattern (20 bp):
AGAATAGGTTGCTACACCAG
Left flanking sequence: Indices 222066 -- 222565
CACTTCGGCCTGCCCACTAGAACTCTCCATAAGGAAATGGACGTAAGAAAGGTCGGTCGAACTCC
ACTGCCTTCAAAGTGCTCAATCGTAGACTTGCTTACTATGGCTGTCGGGACTGACCGCTAAGCGA
ACTCTCACTCCAAAGGAAGCTTACTAGAATGGCTTGCTCGCTCTGCGTGTGACCGATTCGCTCCA
TAGCTTACTGAAAATCCATACCAACTCACTCACAGCAGGGATCTATTCTCTAGCTAGCTCTCCGG
TGTATGCCTCTCCAGCGGCGAGGCCTAGAGTACCCTTCTGTCTGACCAATAGCTACGAACTGCTC
ACTCTAAGAAAGCAAGAGGAACTCATTGAGAATAGTATGCTTAGGATCCAAAATCGTATGTATTC
TCTATCGAATCGTCTGCTCACACTCATCCAAATCAAATAGGTTGGTATCTCTCATTCACGAATAG
GTTGTAGCGAATCAGTTGCTTCCTGAATAGGTTGCCAAACCCTAT
Right flanking sequence: Indices 222618 -- 223117
TGGATTGATGCTTATTATCAATCCTTGTGGGAGCTTATACGGGGGCCCCTATGCGGTGGCACGCC
CTCCCTCTTCTAAGGAGAAATTCCTATACTATTGAACTATAGCCCCCCTCTACGAGATGAAAAAC
AACAGAGAAGAGGGGAGGGGCGCATATTTCTTGTTTACAAAAATAGAGAAAGCTATTAATTAACC
TATGGATTTCCCTCGCAGAAGAAAGATGAACTGGAACAAAGCGAGCAAGGGATTCAAGATTAGCG
GATTAGCTAAATTAAGCAAGCAAAAGGCAAGGCATGAGCGGCAAGAATCAAGGGCATGCCTGACC
TGAGCTCCTACTCCTAGGCCAGAGCAAAAGCAGAGGAGAAGAAGGAAGATTCAAAAATTTGAAAT
AAACGGATTCGCTCGCCCAACTAGCTTATGGGGACCTCTTCCTCTTTCCGAGAGATTCAAGAAGA
ACGAAACGCGCTTTTTTCAATTGAAGAGCTCGGCCGGGCAGTTCA
Found at i:228631 original size:13 final size:12
Alignment explanation
Indices: 228598--228635 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
228588 AGCCCGTAAT
228598 AGGAAGGGT-AA
1 AGGAAGGGTGAA
228609 CAGGAAGGGTGAA
1 -AGGAAGGGTGAA
228622 AGGAAAGGGTGAA
1 AGG-AAGGGTGAA
228635 A
1 A
228636 TCTTGATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.45, C:0.03, G:0.45, T:0.08
Consensus pattern (12 bp):
AGGAAGGGTGAA
Left flanking sequence: Indices 228098 -- 228597
GCTATCTCGCCTCTAGTGGCTGATTCCCCACACCAATCCTGGAGAAGAGGAAGGACTCGATGTGA
GGTGAGTTGACTGTAGGGCGCTGCTTGATGCAATTTGGTCAACTACGTTTAGTGAAGCGGAAGCT
GAAGTTGAATATGTCACGACAGGCTCTTTACCATATTAATGTATATGTATCTTCTCATTTCGGCA
GAAGTGAATAGGTTGGTAACTGGTTCGTCGTACGTTCCAATATCGACCTGCGGCGAAAGACAGGT
AGGAGCGAATCAAACTTTCTTAACGGGTTCAAAAACACTTTGCTCAAGCTAAAGCAGCTCACCTG
AATAAAGAAAATTGGAAGAGATTTAATTTAAATATATAAAGTCTTTCCTGTCTAAGTGTGCGGAA
ATAGAAACCCTTAAAACAATGAAGAGAATCGCTTTGCGAGTGTCCGCTCCTCAATCTCCGGCAGG
ATAGGAGTCGAAGATATCAAGTCAGAAGGAACCGAAGCCCGTAAT
Right flanking sequence: Indices 228636 -- 229135
TCTTGATCGAAAAACCTCGTTACTTCAGCAGCGGGTAAAAAATAGAAGAGTAAGAAGTAGTCTTC
CATACTCCCCTAACACTCGTTCTATTCGCCAGGGTTTCCTTGAACACTGAACCTTTCAAGCGCGG
GGATGATGCCCTGACTAGAACCTTTCTGAGCAGCTATTGAGCCTATCCTATTAGCTTCTTGCCCG
CATCCCTTCGCCTTGATATTATAATAGATCAGTCTTCTTCGCCAAGTAAGAACTTCTATAATAAG
GTGAGCCCATGACTTTGACTTATAAGATTCGGATTTCTAATCAATATAAAAGTCAGCAACCTTTT
ATAAGAGGCGGTGGCTTCCTAGCCCCAGGACTGATACCGTACTCACCGACCGAAAGAAGAAGGAT
GAAAAGCCACTAGAACACTGAAGCTTTCAAGCCCTAAGCTAAGAAAGAGTCCCGTTCAAGCTACT
GCTCCTAGAGAATTTTGGTAGTACTCGATTGCCTTTCCTTCTTCT
Found at i:229160 original size:13 final size:13
Alignment explanation
Indices: 229142--229166 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
229132 TTCTTCTCAC
229142 TAAACGAATCCCG
1 TAAACGAATCCCG
229155 TAAACGAATCCC
1 TAAACGAATCCC
229167 CGTGCTTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.16
Consensus pattern (13 bp):
TAAACGAATCCCG
Left flanking sequence: Indices 228642 -- 229141
TCGAAAAACCTCGTTACTTCAGCAGCGGGTAAAAAATAGAAGAGTAAGAAGTAGTCTTCCATACT
CCCCTAACACTCGTTCTATTCGCCAGGGTTTCCTTGAACACTGAACCTTTCAAGCGCGGGGATGA
TGCCCTGACTAGAACCTTTCTGAGCAGCTATTGAGCCTATCCTATTAGCTTCTTGCCCGCATCCC
TTCGCCTTGATATTATAATAGATCAGTCTTCTTCGCCAAGTAAGAACTTCTATAATAAGGTGAGC
CCATGACTTTGACTTATAAGATTCGGATTTCTAATCAATATAAAAGTCAGCAACCTTTTATAAGA
GGCGGTGGCTTCCTAGCCCCAGGACTGATACCGTACTCACCGACCGAAAGAAGAAGGATGAAAAG
CCACTAGAACACTGAAGCTTTCAAGCCCTAAGCTAAGAAAGAGTCCCGTTCAAGCTACTGCTCCT
AGAGAATTTTGGTAGTACTCGATTGCCTTTCCTTCTTCTTCTCAC
Right flanking sequence: Indices 229167 -- 229666
CGTGCTTGAGTAGAAGTGGCTTCCTATCTTCGCCCTCTAGCGTTCAATCTCCACTTTTATTTTCC
CGGGATTTTAGGCTGCAAGTCCATTTCCGCTCGTAGATGGGATCTCAAATCGGCCTTTTTGCGTT
TTACCGGGAAAATTGCTTGTTTTCGGATTTCTCTTCCTAAGGCAGCATCTCAATGTGATAAAAAT
CCCCAACCCCCGTGTTTTGGGCTTGTTTTTGATCGGATTGGCAGGTTTGGAGTGGAGGATAAAGA
CTTAGATTCTGATTCAGTGCCCTTCTGATTCTGTGCTGTCTGAACAAAGTATGCAAGCAACCCCC
TATTCCACTACGGAGATTGAGTTACCTGTCTTCGAACCTAAACTGGCTCACTAGCCCACAAACTT
AGATTGGAATGGAATGCTTTCAATGGCCAGAAGGGAGGAGAGGACTAAGGATCTAATCTTACCCA
AGATCAAGATGGGAGAATAGTCAAGCAAAGGCTATGGCAAGGGAT
Found at i:246837 original size:12 final size:12
Alignment explanation
Indices: 246796--246837 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
246786 GACTTTGACC
246796 CGGGAACAGCAG
1 CGGGAACAGCAG
246808 CTGGG-ACAGCAG
1 C-GGGAACAGCAG
*
246820 CAGGAACAGCAG
1 CGGGAACAGCAG
246832 CGGGAA
1 CGGGAA
246838 GAGAAAGAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 21 0.81
13 3 0.12
ACGTcount: A:0.33, C:0.24, G:0.40, T:0.02
Consensus pattern (12 bp):
CGGGAACAGCAG
Left flanking sequence: Indices 246296 -- 246795
AGTCCGGGCTTACCTTCGGTCCAAGTTGAGCTCAAGCGGGAGTTAGAGCTGCAGTTAGAGCGTTT
AACCCAGGTTCCTTCCCCGGAACTAGAGCTTCTTTTAGTCCCTAGAGTTACAGCAGCCGTACCTG
GAGTTCCAGATGCAGTTACAGATGCCGTTACAGCAGCCGGAGCGTTTTCAACTGCAAAAGCAGGA
GCCTTTTCAAGAGCAGCACCAACAACAGCGACAACAGCAGCAACTGTTTTCAATGCCGGAGAAAA
TCTTGTCTTTCTTGATTCGGGTTCGGGTAGTACGACAAGGGTCTTTTCCCGGTGGAAAGCAAGCA
CTGGCACTTCAAGCAAAGCGAAGAGGCCCCCAAGCTAATTAAGTAACCCCTATACAAATAAAAGA
TTGAGCAGCTGAGCCTAATTAAGAAAAAAAGTCAGAGGCGGGAAGAGGTTATATGTAATTGATCT
CGACTGGTAGAGAAAGTTCGGCTACCCTGAGCTTTGACTTTGACC
Right flanking sequence: Indices 246838 -- 247337
GAGAAAGAGAAGCCTTACCCGGGGTGGGAGTTTATATGAATTACTCGTGAAACCACTGGTTCTAG
GCCTCGCCTTGGGATTGGAAAAGAAGGAAGAAAATGCATTCAACCCCGGGAAAAGCAGCTAAAGC
TTTGCAGTGGGCAATGGCTTAAACTTCAAAGCTGGGCCCTTTAATAATAAGCTTGGCTGGAGATA
CATTATGGAGATTTCTCTCGGAAAGAAGCTATTTTTATGCGAAAAATCCCCCGAAAAGGTGAACT
TGTCCGATTTGAATCCCCATTAACTATAGTATAGGGCTAGGGCAGAAAAGCGGGAGGTGCAGAAG
TTGAAGGAGTTGAGGCAGCTAAAGCAGCTAAAGAAGCTGAGCTAGCGAGGTCAGCCCCAGGGTTT
GCTTTGGGAGAGTTACTCCGTTCCCCGTTAGTTGCCCTTGAATCTCCTGCATCATTACCCGTGGG
AAAGGAAGCACTTGGTACGGACCTTGTTTTCGATTTTCGACTAAA
Found at i:250067 original size:18 final size:18
Alignment explanation
Indices: 250040--250076 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
250030 AACCCTAGCG
* *
250040 CTAGCTGCACCATCTGAA
1 CTAGCAGCACCAACTGAA
250058 CTAGCAGCACCAACTGAA
1 CTAGCAGCACCAACTGAA
250076 C
1 C
250077 GAACCAACTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.35, G:0.16, T:0.16
Consensus pattern (18 bp):
CTAGCAGCACCAACTGAA
Left flanking sequence: Indices 249540 -- 250039
TCGCTTTTCTTTACTTTCCTCCTAGAAAGGGAACTACTATCGCATATCGCAACTGACTACTAATA
ATAAAAATAGCGCTCTCTCATTCTTCTCTTACCTTCAGTTACTCTCTCTTTCGAGCTCCCTCACA
CAATCGAATCGAGGAGAGAAAATGATCAGTTGGTATCACTCATCCACTCATGAGACCGCTCTCGC
CTTATTGCGTTGCGGCATTCACTCGAGCTAGGAAGCCAGCTAGTCGTACTAACAGCTTGAAGTCG
TGTCTTGAAGCTTGCCCCCGCCCCTCAACCTAGGAACAACACTAAGACGTTTCCATTTGGGCTTG
CCCCTTTACTTCCCTCCCGCCTATAAGGGCTTCCCCAAAAGAAAAGATGGCTCGAGTGAAACGAC
TTGATGAGCTAGCTTTAGTCGTGTACGATCATATAGTAGCCTGGCCTTCCGCTTGAAGACTTCGA
CGCTGTGAACTAACTCCTTGCCTTCTTGCCTTCCTAACCCTAGCG
Right flanking sequence: Indices 250077 -- 250576
GAACCAACTGCTTTAGCAACAGTAGCGGATAGTTTGTTGTCAGCTAACAGGGAAGGGAGATTAAT
AACAGCTTTTAGTCTGAAAGCAGAAGGCCAGGAAGACCGGAAAGCCTACTTCGCTCATCAAGTAA
GAAAAACGTGATAGACGTGCGTACTCGCGCGATACGGCCTTTCAGCACGGGGGCAAGCTTAAGAG
AGAGTAGGGGCGATAGCGGCTGAAGCATAAACGGATCCGGTGCCACATATGATTCTATTATGACT
GCCGACTTGGCAGGCAAGGAGATCCCCCCAACTTCGGTAATGCACGGAATCACTCGTTCCGCCTT
CCCCCTGTAAAAGCTGCGAAGGAACTTCGATCGTTGAGATTCAAGATCGGTGAGATGAAAGAAGG
TAGGTGCCCTCTATATTGGGGTTGATTCTAGCTAAAGCTAGATATCTAAAACGAATAGGTAAGGG
AACAGCATCTTTCACTAATGTACCAACTGTCGTGAGTTGGTCGGG
Found at i:253296 original size:16 final size:16
Alignment explanation
Indices: 253275--253306 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
253265 TTCAGACTTA
253275 CTATATGTGAATAATG
1 CTATATGTGAATAATG
253291 CTATATGTGAATAATG
1 CTATATGTGAATAATG
253307 AACCCATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (16 bp):
CTATATGTGAATAATG
Left flanking sequence: Indices 252775 -- 253274
AGGAGGAGTTCTTTTATTGACACCACAGGGGGCTTTCTTGGATATTCCTCATCAATAGACGAAAC
CGGATTGACTATCATAAATAAAATAGTGAAAATTGGATGGAGAACAAGCTTGAAAGGCTTGACTT
GACACATAGGTTCGAGCCCATTTCACAAGGAAATTAAATGTGGATAGCTCAAATGTGCAGTGATT
GGTCTCGTCCAGTTATTAGACCGCCCTTTATTCGACAGGAACGCTTGGCATATGCATAGGTTTAG
TTATTCCATATGGATAGAGGATCGAGTAAGCGCAGAAAAACCAGACCCAGAGGTTGCTTAATCCT
TCTCTTTCTTGCCTTCCTTCGAACGATGGAACCAAGGCGCTGCCTACTTGGCCAGTGATAGATAG
GAGACCTAGGCATATCGAATGATATGAAGATCAACGAGGAAGCGGTTTACCTGATTCATACAGGA
GAAATCCTGGTAGGAGGAGACGATAGCCTTTTCTTTTCAGACTTA
Right flanking sequence: Indices 253307 -- 253806
AACCCATTCTTCACTAAGTGAATTATGGACCTCCCTCTTCTCATCTCTGAAGATGGAAAGAGTTG
AAATGCCAAATCCATTACTAGGGCTTTCGTTGTTCAAGTTCTCGCTCGAGAGGCTTCTTCCTTCA
TCCACCCGGTGTATATCATAAGCTTCCAAAGCTCCAATTTGAAAGGTTTGGCCGAAATTAGAACT
TAAAGATGGTTCGGGCACAACTACTGGAACCTTACCCTCAGGTAGGAGTGTTGGTTCAAAACTCC
TACGTATCAACGATTCCTTATCCGCAATAAGATTGTAAATGAGTATGTCACGACTTAACAACCAG
AACTGCGCTTCAAGCTTTCTTTGAAAGAGAGAAAGCAGGGACCCTTGTTTGCTTCTAGCTTTGAA
AGAGAAACCTTGGAATTTCCACTTAGATTCCAGCCCTGGTACGGTACGAAGTCCTTCCTCCATGA
AAGGATCGGGCAGAAGGTAGAAAGGCTAAGACAAAGCCGCTTCCT
Found at i:379212 original size:19 final size:20
Alignment explanation
Indices: 379188--379225 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
379178 TCAAAAACTT
*
379188 TTAAAGG-TCCGAAGGACAC
1 TTAAAGGTTCCAAAGGACAC
379207 TTAAAGGTTCCAAAGGACA
1 TTAAAGGTTCCAAAGGACA
379226 AAATATGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.18
Consensus pattern (20 bp):
TTAAAGGTTCCAAAGGACAC
Left flanking sequence: Indices 378688 -- 379187
CCTCCGATGGAAAGCGGGAAGGAGGCGAGATATACCCGACCTGGTCAAGGAAACCCACACCTTAT
TGGGATCCTTAAAGCTGGTTGAGATCCTCTTTGATGCCTCCCCTAAAGACCATTAGATAATTCAA
AAATTTTTGAAGGTATTGGGACATTCAAGTAGGCGGCCAGCATTCTATTCATCGATCAATAAGTG
CCCCAAGCTTTTTAAGGTCAAATCTCTTCCTTCTTCCCTGGTTAGCTTTTAGCAGTGGTGAAAGG
AAATTGTTAGCTGACAGGGAGGATATGAAATAGATAGTTTAGAGGTAGTTTAAAACATAAAGTAG
AAAGCCGCCCTATTTAGGTTGTTGGGATTGAAGGAGGAAGGAAGGTTTCATCTACGAGCCACTTG
CACTGAACTGATTGACTTACCAACTTGACTTGCCTACCGACCGAGACAGGACTAAAGCTAGACGT
AGGCCTAAAGCACTCTCTCTCTCCCCAACTCTCTCTCAAAAACTT
Right flanking sequence: Indices 379226 -- 379725
AAATATGCCAGCAAGGGAAAGACAACTTAGCGCAGTGGAATAGAATAGTAAAGAGAGCGTCGAGC
ACAGCTTTCGTGTCACCAGCAATCCTTTTTCTTCGTTTATTGGGAGACTGAAAAAGGCTTTGTCA
AGCAGGCATGATTGTCACGTCGATCGACAGTTGAGCATGGTCAGTTTCATCTTGCCACATCGTAG
CAGCGTACCCGAGTCACAAGCCATCTCCGGACCAAAGCAATAGCAATAGGAAGAAGGATTCATCC
CACAAGGTCTCGTTCCTGCCTGCCTCTCTTTGTCCAACTCGTGTATAAACGTATAAGAAGATTCC
GTGAGTTGAGAGATGAGGTAGCCGCCTTTTCCCCAAGCTACAAGGGCAGCCATAGAGGCTGAAAA
CGCAGCTATTGGTTTGTTCATATACTTGATCCTGCTCGAAGGCGAGAAAGATTTCTATGGATTCC
CGAACCAACGGGTGGAGAGAGCTAGTTGAAGGTCTCTTTTGGTTG
Found at i:409492 original size:19 final size:19
Alignment explanation
Indices: 409468--409506 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
409458 GAGATGCATT
409468 TCCTAAGGAAATCAATGAG
1 TCCTAAGGAAATCAATGAG
409487 TCCTAAGGAAATCAATGAG
1 TCCTAAGGAAATCAATGAG
409506 T
1 T
409507 TCAGTAGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (19 bp):
TCCTAAGGAAATCAATGAG
Left flanking sequence: Indices 408968 -- 409467
ATCCCATCTAAACCCCTTGAATGAGTGAATCCGGGGACAGAGACCTAGCTGCTTCTTTATTTAAA
AAAACAAAGATAAGGTAACTTTCATTGTTGAAGACGCCTTTTGAATGCCTCCAACAGCCCAAGGA
ACGAGAACGAAGAAGAAAAAGAACGAACATGAGTGAGCTAACCTCTGGATGCTACCTTTCTGATA
GCAGCTCTTTCCTTTTATTAATGTGAGTAGATGAAGAGGAAGAGCAAGGAAGTGGAACGATTAAA
AAGGGCAGCTACTTGCATTCGAGATGCTTGGAAGACTTGAGTGGATAGCAATGAAAGAAGAGACA
GATGAGCTAGTCCAGCAGATGTAAGGAGGATTAGGATTGCTTCTCTTACGCAATTAACTCAATTG
CATCGACGAGCCTTCCTTTTGCCTTTATTTCATTTCCCCGACTTATCTGACTGACAAAGAAGAAG
AATTGAGCGTCAGATTTATTAAATGAACTCTCTTTGAGATGCATT
Right flanking sequence: Indices 409507 -- 410006
TCAGTAGATGATGAGTGCAATGATTCTTTAATTAACATGGCTAAGAGTTCGAAGCCTAGAGAAAT
GAGTGGAACAAGAAGGGTAGCACAGACAGAGTCTGAGATGCGGGAAAGAGATCCAGTGAGAAGGA
GCTAAGTAGCTAGAAGTTGATGAGCGGACTCATTCCTTTTATAGGCTGCCTGTTGCTAATGAACT
GGCAGAAGTGCCAATAAGAAGAGCTGGAAGGGAAAGGCAGAGTGGATTCTTTGAGTTCCCTGGCT
AAGGGTCCGGAAAGAAGGGTAGCTATGAGATTTATAGATGTGCAACCCTCACCTTTCTTTAAGAT
AGGGATGGGACAGATAAAGAGGGAGATGAGCTTAGGAGTTAGCTGGCTGGCAAAGAGAGATCAAG
AGAGGGAAGGGGTTGCTAGGAGTTATGAGTGCGCATTAGAGACTTGTTCTCATTAGCCGGGAAGT
CTCCCGCTAAGAAGGATGCATCGAACAATATGAATTCAAAGAAAG
Found at i:517675 original size:43 final size:43
Alignment explanation
Indices: 517614--517699 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
517604 TCCCGTCTAG
517614 CCCTTAGTTCATTCCGTACGTCTGTGTAGTCAGTCATTGTCTT
1 CCCTTAGTTCATTCCGTACGTCTGTGTAGTCAGTCATTGTCTT
517657 CCCTTAGTTCATTCCGTACGTCTGTGTAGTCAGTCATTGTCTT
1 CCCTTAGTTCATTCCGTACGTCTGTGTAGTCAGTCATTGTCTT
517700 ATACGTCTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.14, C:0.26, G:0.19, T:0.42
Consensus pattern (43 bp):
CCCTTAGTTCATTCCGTACGTCTGTGTAGTCAGTCATTGTCTT
Left flanking sequence: Indices 517114 -- 517613
TGTCTTTTTACCTATAAAGCTCGACCCCTCCTTCCTCAAGGCCATTAAACAAAGTGGATGGAGAG
TAAGGAATAGCTCTTGCTTGAAATAGAGAGAGACTTATTTTGATAACGATTGCTTTAATGTAATG
ATTGAAGTTCGGATTTCGTTGAACCAGTACCTCCGGCCTTGCCTCTTTCTCCCTATCTAAAAGGG
GGAGTTAAGTTTCCTTCTCCTATGGATCTGCTTTATTGCTGTCCTAAAGCTTCCTTCCTTCCCTA
ACTGGTAGTTGAATTTCGAGGACTCAAGGTATAAGGCAGGCCATCGGGCTATCTCACGGATTAAG
TTCTTTCGATTCCCTTCTGTGGGTTCCAAACCTGCAACAAGTGCTTTCAGCCTAGTCTTCCAAGT
CTTCTAGCTCTCTAGGCTCTCCTAACCCTAACAAGCTTTCCAGTCTAGTTGTCCAAGCTCTAACT
TCTCCTTCCAGCGGTTAAGCTTTCGATGTAATCTATCCCGTCTAG
Right flanking sequence: Indices 517700 -- 518199
ATACGTCTTTCACTATTCAAGTAAGGAGCTCAGGGGCCTGTGTGCCTTGTTTCCAAGATCCGGTG
GATAGCTTTCCTATTTTGTGATTCTCTTGATGCTCCTTCTTTGGCAAATCATCAATAGCTCCGGT
TGGGTTAGACATCAATTGGAGACAGAACTGATGAAAGACGAGACGAGGCGATGAGAGAGGTGGCA
GCTAAAGACTTTCTTACACTGCAGGAGATGACTCTTTTTGTTGAAACCCCAATTCATCTAGTTGA
GGTGGGAAGATCCCAACCGATAGGGGGAGGAATAAAGCATTGACTCAACCCCTTAGTTTCTAGCG
ATCTAGTTCCATTCCCTCCTACTCCTAATATTGAAGCAGGAGGCCAAGGCACCTACAGGAAGGGC
AGCAAGCGACTAGGTTTCATAGGCGGTAAGACTGTCCCATAGAAGAGGTATTCTGATGCGGGCAT
AGTTGACACTCGTAGGTAAGGTTCAAGCTTTGGATATGGACCTTA
Found at i:523311 original size:18 final size:18
Alignment explanation
Indices: 523280--523314 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
523270 GGACAAAGGT
*
523280 AGCTGCAGTAGAGACAGC
1 AGCTGAAGTAGAGACAGC
*
523298 AGCTGAAGTGGAGACAG
1 AGCTGAAGTAGAGACAG
523315 AAGTTCGAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.17, G:0.37, T:0.11
Consensus pattern (18 bp):
AGCTGAAGTAGAGACAGC
Left flanking sequence: Indices 522780 -- 523279
TCAGATTCAGCTCCTCTAGGAAGAAAAGGTTAACCGGCAAGTCGGAACGGCAAACAAAAGAACGG
AAAGAGCCTCGGCTTTGAAACTTCCATTGGAGAACTGTGAGGATATTTCTTCTCGAACAACCCGC
GGGTGCAACTGAAAAGGCTTTAAGAACAACAGAGACTTAGCTTACTTTAGCCCATGAACCTGTAG
TTGCCTTTGGGAGTGTTCTCTTAAGCTGGATCTCCGAATGAACTAAAATATCCCCCTTCCTTAGT
GGAGGTCCTTTCTCGGCTTCTCTAATGAACTCGGGCGAAAAGAGCTTCTGAAAACAGGCCTCGCC
ACTTCTCTCTTAAGCAGATTTCCTTTGTGTCAAGTTGACCTCCCCGGTTCCTTTCGTGGAGGCGT
TTCAACCCCGCTCGCTTGAGAGACTTCTGCGCTCTAAACAGAGGAATGTCCTGTTCACTCTCTTA
TCAAGTAAAGTTGAGACAGGAAAGGTAGCTGCATTGGACAAAGGT
Right flanking sequence: Indices 523315 -- 523814
AAGTTCGAACCTCGACTTACATAACCTAAGAATAAGAAGCGGCCGAGGGGCTTCAACTCCTGCAG
GAGAGAGCCAAAAAGGCAAACAACTGAAACCACAAACAAAGAAACTGGGTCAAGGCTTCCCTAAC
TCTCCTAGTCTTCGAACCCTATCTAGACTAAGTCCGAGAAAAGAGGATTCAAGTCACCCCAAGCC
AAGACAACTAAGGCAAAGGAAAGAAGAGCAAGAACAGGCCTCCCAGCCAAGCCAACTCTTAAAGT
TGAGGTTTCCTTTTCCACTTTTGATTGAACTCTCCGATCCGGGATTTCGCTGCGCCGTTGAATCT
TTATTTATGCCAGTCGGCTTTCCTGTCCACTTTTTATTTGGAATCTCTCTCTTTGCGGTTCTATC
TCAGCGGATGAAAGCCCTTTTCTTGGAGACAGAAAAGGCCGCCAAGCCTTCTCTTCTCATCGGGT
GAAACTTAGAGCTTGTTTGAAAATAAGGCTTTATCCACCTTCTCA
Found at i:544181 original size:36 final size:36
Alignment explanation
Indices: 544134--544202 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
544124 AGCGAACGGA
*
544134 CAAGCACATATCAAGCGCTCATAAAGTGTTGTTAAC
1 CAAGCACATATCAAGCGCTCATAAAGTGCTGTTAAC
*
544170 CAAGCACATATCAAGCGTTCATAAAGTGCTGTT
1 CAAGCACATATCAAGCGCTCATAAAGTGCTGTT
544203 CAGAGATTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (36 bp):
CAAGCACATATCAAGCGCTCATAAAGTGCTGTTAAC
Left flanking sequence: Indices 543634 -- 544133
GTCAAAAGCGAATCCGGGTGCTGGGGAGTAAGCAGATCCCGTAGTCAATCCAATTCCAGTGTCAG
TTCAAGACCGAGTTGGAGTTTTTTCAGTCCCCATAAAAGGGGTTTCGTCATTGCCTGCTGCGCCG
CGCATCTATATACATAAATCAAGCTTGTGCCTTGCCAAACAAACTATTGAATCCCCCCGCCAAAG
CACCAGTCCCATCAGCTGAAGCAAAGGCAGAGACAGTAGCATAGGCGGCATAAACTAGGTTCTAA
GTTGTCCCGCGTAGAATGTCGTCATTCCGATAGGGACATTCGAAGTGGGCAGGCCGTAGGCCGTG
CTCCCGGGAAAGGGATATTTTTTACGTAGCGGAGAGAGCGAACGGAAAAGCACGATATCTGAGTT
GAATTCTTCTGAGTTTAACTAGTGTTGTTTGCAAGCGAACCCATCCTGAAAGTGTTGTTAACAGG
GAGTCAACTCTCAGGGGACGTAGCGTAGCGGAGAGAGCGAACGGA
Right flanking sequence: Indices 544203 -- 544702
CAGAGATTCCGTAAGTAACCCAGTGCAATAAGCCCAAAAAATGAAATAAAAAAATTATTATGATG
TTTCAAATGAATATACCTGTTCGGTTAGAACAAAAGTTTTTTTTTATTAATAGTAAGATGAATAG
TCAGTTGAATCGTAGTTCTCTTATGGTATCTAATTCTCTATTACACAAAAAGTACGGTTTTATTA
GTTTATATTATTCGACGAGCAATAGAAGAATTACTAATTATTGGATAGAGCCCACGTTGCATCTT
CTTTCAGAAGCTTATGGTACAATACATAATAGATTAGTGGCAGCATCTCTTATTAAGGGTTTTAC
TGAAGAAACGGTTAGAGAGATTCAGAATAGCATCGTTGATGGTACATACACCCTGTCTCCTCTTG
TCGCTATGGACAAAGCCTTATCTCAGGATGATTTCTTCTATGTATATCATTGTTACTTACATACA
ACCGAGGCAAAGTGGTTTATGATTGATCTCATCAATCGGATTATT
Found at i:649036 original size:38 final size:38
Alignment explanation
Indices: 648994--649070 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
648984 TCTTTCTTTC
648994 ACTTGCTTCTCTTCCTTCTGGCCAACCCCTCGTATCAG
1 ACTTGCTTCTCTTCCTTCTGGCCAACCCCTCGTATCAG
* *
649032 ACTTGCTTCTCTTCCTTCTGGCCAACCCTTCTTATCAG
1 ACTTGCTTCTCTTCCTTCTGGCCAACCCCTCGTATCAG
649070 A
1 A
649071 TAGGAGATCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.14, C:0.38, G:0.12, T:0.36
Consensus pattern (38 bp):
ACTTGCTTCTCTTCCTTCTGGCCAACCCCTCGTATCAG
Left flanking sequence: Indices 648494 -- 648993
ATCACGCAGATTGACAGGAGACGGGAGACTTTCAAGTGTCCGGATGACTTATTGCGGATTCGATA
CTCAAAGAAGGCCTAGAAGCGAATAGCCCACTTGAGCAATTCGCCATTCTCCCACCGATTCCTCT
TCATATCAGAAGGCCTAGATGCGTTATTATCATTACCAGATTCCATTCAAAGAAAGAATCACTTA
GACAAAGACCTTACCTTAAAAGTGAAGATAAGCCACGAAGTGCCCGGTTGTGCCTTGCCTATGCA
TGCGTAAAGCAGAATGCGAAAGAGAGGCATGCGGTAACCCAATGATGATGGATCAGATACCAGAA
TCACCTCCTTTTTCCATACATATCAAAGGGGAAATTCGCAGTGGACCCTTGTACTCCCTAACTCA
GTGGCCGGTTCGATCATCTAGTAGGGTGAATTAGTTTCCGGTACTGCTTGCTGAGATCAGCATAA
AAGATAGGGATCGTATGTAGGGATGTCTCAACCTTTCTTTCTTTC
Right flanking sequence: Indices 649071 -- 649570
TAGGAGATCCCATCCCACCATATCTAGTGAGGGAAGCCGCGCCGGTCAAGAGAAGGTTGACTCTC
CATCCCACCCGAAGCCATAGCGGAACATCAATCGAAATAAGACTTTCTATCTCTAGTCGACCACA
GCCGATCCATCTACGTGCTCCTGGCGGTCACAAAAAAGGCTTTCGCCGATGACAGAAGAAGTCGA
ATTTCAATTCCATTATGGTGGTCTCGTCATGTCCTCCGGTTCAGCCTGTCCTATTGGCATCGGTA
GAGATCGGCATCGCATTCCGGAAAGAGGGATCGTGGCCTTTCCTTGATTGCTATCATCTTCGAGT
TGGGATATTCTTCTTTTGGCGTTATGCATTTATCTGGTTTTTTCCATGGCCGATCAATCCTCTGC
TGCTCAGGTCGTATCTCCGGGAAGAACTATGCCTCCTGGCGTTATGCAGATTGACATTGGAGGTC
GGGAACTGCTTGGTTACATAGATGGGTCTATTGTAGCCCCAAGCT
Found at i:673344 original size:17 final size:17
Alignment explanation
Indices: 673322--673355 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
673312 CCCCCCTCTC
673322 CTTTTGACTCCATATAT
1 CTTTTGACTCCATATAT
*
673339 CTTTTGACTCTATATAT
1 CTTTTGACTCCATATAT
673356 GTGGGCACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.06, T:0.50
Consensus pattern (17 bp):
CTTTTGACTCCATATAT
Left flanking sequence: Indices 672822 -- 673321
TCCCTCTGTCTTTTCTCGCTTTGCTAATCTTCCCCTCTCCTCGTTCCTCCCGCTGGCCTCTTGGG
ATAGCAGCCTTCGGGCTTTGCCTGCCCTTTTTTTTAAGATAAGACATAATTCCGGCTCGGCCCGG
GAAAGCGCTGGCAACAACAGAAAGGAAGGGGTCCATGTAGCTGCTGCGCCCGCCCCCTTCTTAGT
CAATGGGGCAGCAAGTTCGGCATCTACTAGAAAAGAGAGAATGAATCCACTTCAGATAACCACGC
CTCTGCTAGGCAGCGTGTGGAATGGCCGAGAGCGGACCTTTTTGGATATATCATCCAAGTCGAGA
GTGGAGTTACGGGAACAGCCGTCTGATAGAAAACTACTTTCACGTTCGGTTCAGAGAGCACTTTT
TTCGTTGAGAATTCCTCGTTCCCTTTCGTGTGAATTCCCCAGCGGCGAATTAAAAACTTGTGGGG
CCCTATCTATTCCATCTCTCGAGCCCCGAAGAAACCCCCCCTCTC
Right flanking sequence: Indices 673356 -- 673855
GTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAGCATTCCTTTCTATTGCGCCTA
AAATCTCTATTTTTGCTAATATTTCACGTGTTTCTATTTATGGTTCCTATGGAGCTACATTGCAA
CAAATCTTCTTTTTCTGTAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAAC
GAAAGTCAAAAGACCTCTAGCTCATAGTTCAATTGGACATGTAGGTTATATTCGTACTGGTTTCT
CATGTGGAACTATAGAAGGAATTCAATCACTACTAATAGGTCTCTTTATTTATGCATTAATGACG
ATAGCTGCATTCGCCATAGTTTCAGCATTACGGCAAACCCGTGTAAAATATATAGCGGATTTGGG
CGCTCTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTTCTCATACGTAG
GAGTACCCCCGTTAGCCGGCTTTTTTAGCAAATTCTATTTGTTCT
Found at i:683546 original size:21 final size:18
Alignment explanation
Indices: 683495--683546 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
683485 GGTGGAATAG
* *
683495 ATAGCATGGGGTAAGAAC
1 ATAGGATGGGGGAAGAAC
683513 ATAGGATGGGGGAAGAAC
1 ATAGGATGGGGGAAGAAC
683531 ACTACGGATAGGGGGA
1 A-TA-GGAT-GGGGGA
683547 GCCTTCTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 17 0.59
19 2 0.07
20 4 0.14
21 6 0.21
ACGTcount: A:0.37, C:0.10, G:0.40, T:0.13
Consensus pattern (18 bp):
ATAGGATGGGGGAAGAAC
Left flanking sequence: Indices 682995 -- 683494
ATTCATCATTGATGATAGGCTTGATTTTCTCAAAAAGACGCTTTCGACAAAGATTGAGCATTAAT
CCAGAAAAATCTATAACAAATAGGACCCGCAGATTGGACCAATATCTTATCTCAGCCAAAAAGCT
GAGGGCTTGCTTATCCCTACGGAAGGCGTATGATTGGTCAAGAAAGAGATTCGGGGTGAAGTAGT
ACTTTCGTAGTACATTAGCAAGTGATATCAGAATCAGTTCATCTTCTAGTTTGAGACCAATATAG
TATTGCATATAATCATACTTGTCGCCGGTGTCGAACCGAAAAAAACACAAGCTGTCCATCTTAAA
AGGAAAGCCCTTTACTTTTTTTATTATCCAAAAGGAAGTGAGTTTATACTCACCAGAAAGAATAT
CCCGTTCCAGTCTAACGAGATTGACCCTATGGAATATAGGCTCATATTTGAATACCGTCTCCCTT
ATTTCCATAATAAGACATTCTCGTAAAGTTGACATGGTGGAATAG
Right flanking sequence: Indices 683547 -- 684046
GCCTTCTATTTGAACTAAAACGAGTCATGCTTCACTTGTGAATTGATTCACTTCAAGGCTGGTTC
TGAACGTCGCGTAACATTATCCCAAACCAAAAGTACACCCTTTCAAACCTGACTAGCTGATGACT
AGCTATCACTATTGGTCAAACCAACCCCTAGCTGGATATCCTTTACTGCATCTCCTAAGAGCTGA
TGACGGAATGGACCGCTCACCTTTATTCCTTGACCTCATATTTTTATGTATAATTTACAGAAACT
ACTTTTTTTGAGCATCAAAGCCCGATTCCTAGCCAGTATCTGATTCCCTCGGAATATCGGTTTTC
TTTCTTTCCGCACAGACGATGCCGGTATGCTTATACGCGACTAGTGAAGACAGCTCTATTTACGT
TATTCCGATCCCCGCAATTATCAAGCTCACCTCACCGCATTCGCATTCGCATTCATAGAGGCCCT
TCGCTTTAGCTTACCACCTACTCAATCCAAATTCAAAGACTAACG
Found at i:688551 original size:69 final size:70
Alignment explanation
Indices: 688427--688560 Score: 162
Period size: 69 Copynumber: 1.9 Consensus size: 70
688417 TAAATTCATT
* * ** * *
688427 TTCCCTTCCTAAGTGACATAAAACTAGTGCCACTTTTTTAAAAGACCGGTATTTTT-GTCATCAA
1 TTCCCTTCCTAAGTGACATAAAAATAGTCCCACTTTCATAAAACACCCGTATTTTTCGTCATCAA
688491 TCCGA
66 TCCGA
* * * * *
688496 TTCCTTTCCTAAGTGACATAAAAATGGTCCCACTTTCATGAAACCCCCGTCTTTTTCGTCATCAA
1 TTCCCTTCCTAAGTGACATAAAAATAGTCCCACTTTCATAAAACACCCGTATTTTTCGTCATCAA
688561 GAGGAAAGTA
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
69 45 0.85
70 8 0.15
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (70 bp):
TTCCCTTCCTAAGTGACATAAAAATAGTCCCACTTTCATAAAACACCCGTATTTTTCGTCATCAA
TCCGA
Left flanking sequence: Indices 687927 -- 688426
TTGGCAGAGAATTTTTAGGAAAGGGCAGCAGCCGGGGGAATTGTAGTACTTTTGGCCGGTTCTTT
TTAGTGTCCACAACTATTCTCAGAATATAATGTATCAGGCAGGAACATCTTGTTCGTGCATCTCT
TCTTCGAATGCCAGGGGGCCCTCTAATACCCCGATCCAAGCCTCGCGATGAAGATTAGAAAGATC
TACGAATTTCGTAGTGCGAGTTCAGTTTTATTTCGAATTTCTGAATAGTATACCGCTAAATAGCT
AGAGGAATACCAGGGTCTACTGTGCTGGTCTTAGAGCACCAGCGCTTATGGAGACAACAGCGGGT
ACATTCAGTATTTCACTTCTTTCCCCTTCTTCTTCCCTGCTCGGGCATATCGTAACTATTGATTC
AATCGTGCCATAAAAGACCGTGATTTTGGTTGAAAGTAAATTTCCCTTCCTAGACGTCAATTGAA
ATCGGACAACTTTCTAAAACAGCGTCTTTTTCGTCTAAATTCATT
Right flanking sequence: Indices 688561 -- 689060
GAGGAAAGTAAGAAGGTAATCGAATCGGCTTACTCAAGAGTTCTTGCTTCTAGACCTGAAAAGAG
CTTCTTCGATTCGGCCTCTATCTAAGTGCATTTGTGATGAAATGAAATCTCTTCCTACTATTCTA
TACGTCTTTTCTTGTTCCCGAAGGTCTGTCTATTTAAGAGTCTAATATAAAGTCAAGAAGAGGCA
GAGGATCGAAGGTACTCTTTCTTAGTTAGGGGAGTTTGGGCAAGACTCAAAGGAATGGAAAGAAG
CTCGGCCAAGGGCAACATTCGAAGAAAGAGGCTCGGCAAAGACTAAGGCGGATAGCGGAGTTCAG
AAACCTCCTTCTTTTTTTTATAGGAGATGAGCGAAGAAGCTAGCTCAACCGAATAAAGATCTTCA
AACGAAACTGAATCTGTATTAGAATAAAAAAAAGTACCTGGATCCAAGATCAGGATATCCGGTTT
TGTTCCAACCAAGGGAAAGTCTTATTCTATAGATTCCACCTCAAC
Found at i:689515 original size:18 final size:18
Alignment explanation
Indices: 689475--689517 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
689465 CTCGAAGAAA
* *
689475 AGCTTT-TCCTGATCTTG
1 AGCTTTCTCCCGATCCTG
*
689492 ATCTTTCTCCCGATCCTG
1 AGCTTTCTCCCGATCCTG
689510 AGCTTTCT
1 AGCTTTCT
689518 ACGGATTCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.12, C:0.30, G:0.14, T:0.44
Consensus pattern (18 bp):
AGCTTTCTCCCGATCCTG
Left flanking sequence: Indices 688975 -- 689474
TAAAAAAAAGTACCTGGATCCAAGATCAGGATATCCGGTTTTGTTCCAACCAAGGGAAAGTCTTA
TTCTATAGATTCCACCTCAACTGAAAGAGATGCCCTAATCAATAAGCGGGATGCCGGAAAGTTTG
GAACTGATAGCGCTAGTCACAGGAAACTACTTAGTTATTTGAATTGTAACTTTCCACAAATAGAT
AGTCGGCAGAGGAAAGGAGTGATATATGCTCTCAGGAGTCTTGCTTTGTAGCTGAACCAGTAGCT
TACGGAGGAACTGACTCGACATCAAGGTTTGGAAGAAAGCTGCTAGCAGATAGTTCAGTAGCAGA
GTTGATAACTACACCTAGACCTTTGGCTAATAGTTCCCAGAAGACTCAATCCATTCCCCGGAGGA
ATCGCATCAAATTATCCCTTTCCTAACGTAAAGCTGTTTTCAACTCCGATCCTCTAAAAGAAGGG
GGTACCCGAACCGAGCTCCTCAGCGGCACCTGCAACTCGAAGAAA
Right flanking sequence: Indices 689518 -- 690017
ACGGATTCTTATCCCGATTCTGATCCCGCTACTTATTCTCTTTGTGACCCTATATCCGGAGTCTC
TTGCTCCTGCTCTTGATACCGATCCTCCATTAAAGAAGTGTGAGGAATGCGTTGCCCTGGTATCG
GTGTCCTTAGGCTGGGGGAAGAATCTTTCCTTGTCTTTTCTCTCTTCTATTTTGAGTTCGCCACG
AAAAAGCGTATGAGATCTGGGATTTCCACCCTCTCCCACTCCTGAGAATGGCTTCATTCCTTGGT
AACGCTAGCAACAAAGCAAAGAGCAGAGCTCCGCTAAGAGGTAAGAAAAGGAGAAAGCTCCCTAG
GAAGAGAAAGAGAACAACATTACGAGATTGAAACATGGTTCTAAGCCCTCTATCAACTTGCTAGC
GCTAGGGATAAAGGAGAAAGCATACAACCTTAAGCAACTAGAAGCAGATAAAGCAACACACCTTA
CTAGGAACAAAGGAGAAACAAGCAAACAAACAAAAAAAGAAGAGC
Found at i:703613 original size:21 final size:21
Alignment explanation
Indices: 703579--703640 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
703569 CTAGACCAGG
* *
703579 TGCTAAAAGCAAATGAAAGTT
1 TGCTAAAGGAAAATGAAAGTT
*
703600 TTCTAAAGGAAAATGAAAGTT
1 TGCTAAAGGAAAATGAAAGTT
*
703621 TGCTAAAGGAAAAGGAAAGT
1 TGCTAAAGGAAAATGAAAGT
703641 GGACCACCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.48, C:0.06, G:0.23, T:0.23
Consensus pattern (21 bp):
TGCTAAAGGAAAATGAAAGTT
Left flanking sequence: Indices 703079 -- 703578
TTTGAAATTTAGTCAGTGCTCCGTGGACAGTTCCTTGTCTCGCCCCCCCAGTATAGTAAGGTTCT
AGGTCTCAGGTTTGGCCTTCGTTCTTTCTCCCATGCTAATAGTTGGTAAACAACCACAACTCAAA
CGAATTCATCACTACTCATACAGGAAGAGAAATCAGTCTCTTTCTGTATAGAGGGAATAATTTTT
ATCTCAATCACTCATGCCTCAACTGGAACCAATTGTTGATCTACTAAAAAGTATTGACCCCGTTT
ATTATAAAATTATTTTTGTGGTCATTTTGGTTTTCGTTATTGGCCATCTTGCCCGGGGTCACATA
TTCTTTTATAGGACATGGAAAAATAAGAAAGAAAATCTCAATAAGACCTTGGAGTACTATATCAA
GAATGACATTTTATATGAGATGGAGATTAATATAAAGCAGGCGGTTATCCGCGTTGTGAACAAGA
CCCCCCCTGTCGCCACCGATCCTTTCCGCCCGGTTCTAGACCAGG
Right flanking sequence: Indices 703641 -- 704140
GGACCACCTACCATCAATAGTCCACTTGATCAATTTTCCATTGTCCCATTGATTCCTCTGAAGAT
AGGAGACTTTTATTTATCATTCACAAATTCATCTTTCTTTATGCTGTTAACTCTGAGTTTTGTCC
TACTTCTGTTTTCTTTTGTTACTAAAAAGGGAGGAGGAAAGTTGGTACCAAATGCTTTGCAATCG
TTGGTAGAGCTTATTTATGATTTCGTGCCGAACCCGGTAAACGAACAAATAGGAGGTCTTTCCGG
AAATGTGAAACAAAAGTTTTTCCCTCGCATCTCGGTCACTTTTACTTTTTCGTTATTTCGTAATC
CCCAGGGTATGATACCTTATAGCTTCACAGTGACAAGTCATTTTATCATTACTTTGGGTCTTTCA
TTTTCTCTTTTTATTGGCATTACTATAGTTGCATTTCAACGAAATGGGCTTCATTTTTTAAGCTT
TTCCTTACCCGCAGGAGTCCCACTGCCGTTAGCACCTTTTTTAGT
Found at i:711358 original size:2 final size:2
Alignment explanation
Indices: 711351--711379 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
711341 AAAATATGTA
711351 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
711380 TAAAAACGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 710851 -- 711350
CTCGCCGCTGGTGCTATTACAGAATCGGTTGTTAACGTAACCGCTGATGGAGGAATTACAGCTCT
CTCATCTATCTAAGTAAGAGAAAGAGGAAGGCTGGTTTTTGGGGTCGAGTCGAGGTCGGTCCATA
TTTTTTCTTTATGGGTCGATGACTAATGAGTTTACATGCCCCCCAGTCGAGTAGTCCAGCCAACC
CTTGCTTGCGTTCAAGCTCTTTTAGCCGTAAGAAGACAACGATATCACTGCGGAAAGAAAAAGTA
AAGTTTTTGAACTTCGTCGGGTTTTACCACTCCAGCGGAGGCATCGTTCACGTACTGATTCATAG
CGCTTCCCCCGTAGCCTTCTCCTATGGGTCACCCTGGTATTCCGGTTAAGTAAGTCGAAAACGCG
TTCTCGATGGAGCAACTTGCTCATTTCATCGATTTCCCACTCGGCCGGCTAAACGAAAGAAAAAG
AACCTCCTAACCTACAGAAGAGTCCAGTCTATACAAAAATATGTA
Right flanking sequence: Indices 711380 -- 711879
TAAAAACGTCTTTCTGATTATGGAGCAGAATCAGTTGCGGGTTCATCTGTTGAAACTACTGGTGC
TCGCCCAGATGCTACCCCCAAAGGAAATGGAGTCTATTTTTGCTTATTATAGTGAATTCTTTTCA
ATATCTTTCCCCGTTTGAGGTCTTATATACACCCACCACCTACGACCATTTGCTTGATTGCCATC
AGGAGTTATTGCCCACCTATCTATTGTACTCTGTCTTCCTATATCAATCCACCTTTGAGCATTAG
TCCATTCTGGGTTCCATTTTGCTTTTCTTGCCGCTCGTTGCTTTCGTCTTCCTCTCATCCGGCCC
CAGTAGTTAGACCTACTAAAGAAATTCTTTAGAAAACTAAATAAGGCGACACTCCTTACTACTCA
AGTTATCAGTTTAGGCCCACATGTATTGTATATAGAGAATAGAAAGTGATCCTTGAGTGCTATCG
ATACCTTAAACAAAGATAGACTAGATTCAGAGAAAGAAGAATTGT
Found at i:712579 original size:27 final size:27
Alignment explanation
Indices: 712505--712571 Score: 134
Period size: 27 Copynumber: 2.5 Consensus size: 27
712495 TGATTGCAGA
712505 CTCCTCTCCCTTTGGTCGAGCTCGGAG
1 CTCCTCTCCCTTTGGTCGAGCTCGGAG
712532 CTCCTCTCCCTTTGGTCGAGCTCGGAG
1 CTCCTCTCCCTTTGGTCGAGCTCGGAG
712559 CTCCTCTCCCTTT
1 CTCCTCTCCCTTT
712572 AGTTGAGCCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.06, C:0.40, G:0.21, T:0.33
Consensus pattern (27 bp):
CTCCTCTCCCTTTGGTCGAGCTCGGAG
Left flanking sequence: Indices 712005 -- 712504
ATAAAGCGGTGACAGGGCCTTGTGGAAGGGCAAAAGCCGGGGATGACTGTCAGAGGGATATGCAT
CTCCTCGTTTGCCGTTCTATGCGCTAATGAAAGGGGCAGTCAATTCCCTTTATTCAAAAGGATAG
GTTGAACTAGTGGAGGTAGAAGCCGTGGAGATCTTAGCGCATTTGCTCAAGATCTTATTGCTGAA
TTGCAGCCTAGCACCCACCACATAAGAGAAAGTTCCCCACAAGATCCAATCTTAGCTCCTTTATT
GCTTAGTTCGCCGGTAACATCTCTTAATGGTACTGCTTGGAGTTTGACCAAGAGGGGTTCCCGTA
AGGGCTATGGGGTCTATCTAGTGATTCGTGGGGCATTAGCCCTTCCCACTACCTCTTCTCTATTA
TTCTATTCTAGAGAATAAAAGTCTTCTCTTTCTTAGATCCCTTCGTCTCAATTCGATAACGAAGT
AACCCCATATGAAGCAAGAAGCCGGAAGAAGCCCTTGATTGCAGA
Right flanking sequence: Indices 712572 -- 713071
AGTTGAGCCCTATGGTCGAATGAGGGGAACATCAATGCGTGTTGAAGAGCATGTTGTAGCACCCC
AGCCATTCCCGCTGACTATAAGACAGGGCCTTTACTTCATCTGAGCTCGGGTTTTCCTTGTTCTA
ACAAAATGGGTCAGCTTAGTCCCTAGGGAAATCCTCCGGTTGAGCGCTATAGCCTTCAACCTCGT
GCTCTAAGGGTCTTTCTGCTAGAAGGGATGTAAAGACTTTGAAACAAGCTAAGCTATTAGAGGGA
CATACGTGGAAGATCAATCCTGGGCTTAGATGAAAGAAAGCTTCCTTTTTTTATTAGTATTTGTA
GTTGGCTGATATAGATCAAGAGAGTTGGATCCATTGATAACCGTAGGGAGAGAGAGAAAGTGTAA
GTTAACCTTCTTCCATCCTAAAATCCGGATGTATTGAGCCTGATCAACGAACGAGTGAGAGAGGC
TTGGTCAATAAGAGGAGAGAAATTTATCAGCACGAGACTAGCTAT
Found at i:721745 original size:17 final size:17
Alignment explanation
Indices: 721713--721747 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
721703 AATCGCTTGT
*
721713 GAAAGAATAAGTTGTTA
1 GAAAGAATAAGCTGTTA
*
721730 GAAAGAATACGCTGTTA
1 GAAAGAATAAGCTGTTA
721747 G
1 G
721748 GACCGGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.06, G:0.26, T:0.26
Consensus pattern (17 bp):
GAAAGAATAAGCTGTTA
Left flanking sequence: Indices 721213 -- 721712
AGGAAGCAAGTTATGTTGACTGCTTGAACTGCTGTTGTGCAGTTAGCCGATATCGCGACCACTAG
ATGAAGGTGAAGATCATGATGGTTTACCTGTAACTTCATTCTTTAGATGTGAAGGTATATAAGAT
TGCAGTTTCCGGGCCTCCAGCGAGGTTCCAGAGATGATCAGCAGAACGAAGAAGATTCCTGAAGA
ATCCGAGTACTCGATCGATCCAGTACACCGTCCCTATGGAGACAAGAGGTGCGCGTCTCGCGTGC
ACGTCCAGCGACGTGAGGATGTAACACAGTGGAAAGTAGAAAGAAGCAAGGGAAGGAACTTGCTC
TAAAGTTAGTGAGTGCACTACTAGTCGTAGGGCACGAACGGTATAATAAGTGTTGCTGCTGCCAT
CCGAATAGATCCTTTTAGCTTAAAGAAGAGAAAGATCTTAGTTAACCCAAAGGAGAGGTAAGAAA
GCACTCTTCCAGGCAGTAGAAGTAGGAGTAGGACGAATCGCTTGT
Right flanking sequence: Indices 721748 -- 722247
GACCGGAAATCGTAGTAAGGACTGTTCCGGGTAAAAGTCTGAAACCGTTCACTCTCGTTTCATCC
GCTGGTATTGAGTCCGATGTTCTGTTAGAGCTATTGAGTGCCATTACTACCCAACTCTATCAATG
AAGGGCTTTCCTTAAGGGATTTTCCTTAGTTGCGAAGAAGTGAAGTAAGGAGTGAAACAACTCAA
TTGCTAAATGGAGGAGTCGACTAGCTCGAACATAGGAAATTGCCTTATTTAAATTAAAAGATGGG
GCTTTACCGGGTGAGTAATAATAAAGAAAGTCAAGTAAAGTAGCACATCACGGAACAAGACAAGA
AGAAGAGGTGATCTTAGAGAACGAGGGCGAGAATTTGTTGCTGTTAGCTCGAGTTCAGTGAGCCT
AGGGGAGGTTCACTCAGATGTTCTTCCTATTGGAAGGCGACTCCTCATGGCATGGTTGAAGCTCG
AATTCAAATTATTGGTTTAGGAGCTCAGGCCTTCTTTCTCTGCTG
Found at i:786399 original size:27 final size:27
Alignment explanation
Indices: 786360--786415 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
786350 CTTGCTGCTC
*
786360 CTGCTCCAGGGAC-TGGTCCTGGGACTG
1 CTGCTCCAGGGACTTGG-ACTGGGACTG
786387 CTGCTCCTA-GGACTTGGACTGGGACTG
1 CTGCTCC-AGGGACTTGGACTGGGACTG
786414 CT
1 CT
786416 TTTCCTGCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.12, C:0.29, G:0.34, T:0.25
Consensus pattern (27 bp):
CTGCTCCAGGGACTTGGACTGGGACTG
Left flanking sequence: Indices 785860 -- 786359
TTAAAATAAGAGATTTGACATTCCATACTTCACTTCGAAAGCTGCTAGTCCGAGCCTTGCCATTT
AGTTCACGCCCTCTCCCGTGAAAAGCCGAAAGGAAAGGCCAACAACTGAAAGAACTGCATCACCA
ACAACTGTTTTCAATGCTTTAACGGCAGCTTTGTTCTCTTACTTTCCGGGCGTAGTCTTTGAATC
AACTCTCCCGGCATAGTAGCCTGGTACGGCTGCAGGGACAACAGCAGTTACAGCAGCCGAAGCTA
GAGCAGCGGAGCTCGACTTTCGGTTTCTTACTTTCGGTTCGGGGCCTATAAGTCACTTCTTTTCC
CCAAAGAAAGCACTTCAAGCACCAGTAACTCAAACCCTTGAACCCGGGAGTCCTACTCGCTCGGA
GATTCAATCAGCTGTTCCCGTGGAGAGAAATATAAATTCAATTTCAACAGCAGCCGCCCGAGCTC
AAGCCGGAGTTAGAACAGTTCGAAGAGTTCTTGGCCTTGCTGCTC
Right flanking sequence: Indices 786416 -- 786915
TTTCCTGCTGTCTAGGGTGCCTTCTGCTGGGGTAAAAAAAGACAGATCGGGCTACACATAAATCG
CCATACAAGGAGGTTAACTCCCTTTCTCGATCCTGAAGCCTTAGTCTCTGTCTCTGTCTCTGGAG
CTGGAGCTGGGTCGGGAGATGCCAGAGAAAATCCCGGGATTGAAGCCTTAACTTCTTTCAAAGAG
TCAACTCGAGCATTTAAGGGCGCTTCGCTTCCTCTTGTTGAAGAAAGAACCCTGGGGACTAAAAG
AAGCTCTAGCTCGGGCACCAGACCAAGTGCTGCTGTCCCTTTCGGGCCTAGCGTCGGAAATCGAA
AAGAGTTCAACCTGGCTGCTGTTGGACCAAAGGCATATGAACCTTTTCCCCCTGGTACCACTGCT
GTCCTTGAAGCCGTCATAGAAGAGGGAGCTGCTGCTTCTTCTTTCTCCAGAGAGTCTTCCGGTTC
GGGTTAGTAAGTGGACTAGGATGTTAGGATTCAAACTCCTTCTAT
Found at i:805287 original size:13 final size:13
Alignment explanation
Indices: 805269--805294 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
805259 CGGATTTCTT
805269 CTATAAGCAAAGC
1 CTATAAGCAAAGC
805282 CTATAAGCAAAGC
1 CTATAAGCAAAGC
805295 TACTCTCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (13 bp):
CTATAAGCAAAGC
Left flanking sequence: Indices 804769 -- 805268
GTTTCCGAGCGGGTTCCGCTTTCATAACAAATAAGGCGTAAAAAAAAAATAAAAGAAAGGTCTTT
TCTTTAAAGGTATATTAAAAGAAACTTAGCTTACCAAGAGTTCCGGAACTAGAGAGATAAGAGAT
AGGATTTGTTCTCCATACGAGGGAAAGTACTTTTCGTCTATCTGATCTCCTTGACCTGAGTCTCG
GTTTTAGCGATATTCGTTCCTTCTCTCAGGCTCAAGCTCTGTCTGGTCTTCCTTCCCCATTCCCC
ACAGGCTTCCGGGAGTGCCGGCTCTGTACTCTGTTCGGATCATAAGACTTGCAAGACTGACTTAC
CGAAAAGACTGACTGCTTTCCGATTTTTCGTTCTGCCCCTACTGGGGCTTTAGCCTTACAACAAG
CTTGACTTAAAATAAAAGGCTTGAAAGAGTTTGATCAATGATACGCTTGAACTGAACTATCAGTC
CTAGAAAGAACCCGCTTACCGTGACGGAAGAAAGACGGATTTCTT
Right flanking sequence: Indices 805295 -- 805794
TACTCTCTAAGCCAAGCTTCCCTTTTTTCCCAAGTGCACTTCGGCACCAGACTAGCCGACCTACC
TTGTGTCTCTTCCCTAAGCCAACTTATACAAAAAAGAATGAAGCAAGGAGTTTTTTCTCTTTTGA
AAGCAGTCTTACCGTAACCACTACCGGAACTGGTACTGATGCCTACTTCCTATGACAGAAGGTAA
TCGTCTAGCTTACTTCTTTTCCCTTCTACAAAGAGTAAGGAATTTTTGCTTTGCCTTTCTACTTG
CCGTACTGACTAACTGCGATATTCGAACTGTAGGCTTGACTAACTGCACCTTTTCTTTGATATCC
CTCGACCTCTTACCGCTACTAGCTCCCGGAACTACCGTCCAACCAAAGCGGAAAGCTACTTATTT
TATAAACTATGAAAGCCGGCAACAAAGCAAGGAGCGAAGCCGACTACTTGCCCTATCTCTTAAAG
CTTCACTAGCGAAAACTTAGATTCTAACTGTTTCATTTCTACGAC
Found at i:847702 original size:16 final size:16
Alignment explanation
Indices: 847681--847712 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
847671 GGGAATATTT
847681 TCTCATTAAAGACTCA
1 TCTCATTAAAGACTCA
*
847697 TCTCATTGAAGACTCA
1 TCTCATTAAAGACTCA
847713 CAAGGAAGCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (16 bp):
TCTCATTAAAGACTCA
Left flanking sequence: Indices 847181 -- 847680
TCTTCCTTCCAATAGGGCTACAAAGAAAGGCTTTTCGTGGGCTTATCTTATTTAGAGCTACCTTT
TCGAGGAAAGCTCCACAAGGGGCTCCTGGGGTTACGATGCAAAGACAATAACTCTTTTAACAGCT
CGGGATTTGCCTTTCAGCATGCCACTCCTTTGCCTGCTCCCTTCTTTCTTTGGCGATCGAGCGTA
CTTTGGTTAGTACTCAAAATTTTCTTTTTTTCTTGTACATGACCTCTCGTCTTTCACTTGCTTTC
GAACTCCTTCGTACCCTTACTTGATCCCATCTTCTCGAATAGGAGAATAGTCAGAGTACAGCCCC
TTACTCAATAGGGGGCGAAGAGCTCATATTGCAGAGGGAAGAACTGAAGGCATTGAAAGAGGTGA
ACCGGGGACAGGAAAGCAAGAGCAAGAAGGAAAGGCTAGCAAAGAGCAGCTCCGAGATAGCCAGG
TCAGCGATTGAACTCGTCTAGTAACTAGTAAGAAGGGGAATATTT
Right flanking sequence: Indices 847713 -- 848212
CAAGGAAGCGTTGGTTGGGCAAGCTCTTTCGAGGAGATCAACCGTCTGGGATATTAAGAAGAAAG
AAGGACCAAACTGCTCACCATCCTTCTCTACACGCGCCGCCTCCCTTGAATCAAACAAAAGGCCC
CCTACCTTCTGCAAACCCCTGTTACCAGAGGTAGCGGTGGCTTCTTTGCAAGCTTCATTCGTCTC
TTTGCTGTTGCACATCTCTCCTCGATGCCCTATTCTCCCACAATGAAAACAAACTACATGGAGCC
CCTCATATTCTACCCTTTTTGTTCTTTTTCCAATGAAGATCTTAGACACCAGAGGTTTTTTAGTA
TAAATTTCTACACACAGGCGAGCATATCTGCCTCGCGTGGCGAGAGCTGTATCTCCTTCCTTCCC
AACCCTGCCCCTTTAGCCCCCCCTTAGTCAAATAGGGCGGTAAGTAAGCTCCTTGCTCTTTCTCC
GGAAGCTAATCCAGCCCAATACAACCTGTCTGGCCTTCCAGCTGA
Found at i:877089 original size:10 final size:10
Alignment explanation
Indices: 877074--877109 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
877064 GGGGAATACC
877074 AATATATATT
1 AATATATATT
877084 AATATATA-T
1 AATATATATT
877093 -ATATATATT
1 AATATATATT
877102 AATATATA
1 AATATATA
877110 GAATATATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 7 0.29
9 2 0.08
10 15 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
AATATATATT
Left flanking sequence: Indices 876574 -- 877073
AATGTTACTTGTTAGATTTTTAAGTTAGATTCAATAGTAAAGTATACAATAGCTATAGTCTTATT
CTTATATGAAATGTTACGTTACTTATTCTATATATTCTTATATAATTGTGATTATAATCCGATAC
GTCACTATGAAAATTTTATTTGTTATGTTTATAAGTATAAGGTCTATTGATTGCGCTCGGGCTCC
TGTATCGGGGGAGCCCTGCGCTTACTAGAATATTCATTCTCAATTCCCCTCTTATTAAAGTAATT
TTTCTATCTAAAAAAAGAAAGCGAAGCAACGAAGCGCTAACCAGACTTACAAACCAGAAAGCAAG
GAACCGAACCGCTAACCGTACCAACAAGCCGATCAGCCCTCGTACTTCACAATCAATAGCTACGG
GATTCGCGAGCTAACTAATGCTAATGATGGCACCCAGATTCTAGCTTAGATCGATGGGCCTTACC
AGATTCGCAAAACATCTGACCGGCTACCAAAGACAGGGGAATACC
Right flanking sequence: Indices 877110 -- 877609
GAATATATCGGGCTTTTCTCGCTTGTTTAGTATTGCTTTTTCTTTTTATAGGAGTAGGTTTAGGT
TCTTGCGGGGTTGGCTTGTTAGTCGTAGATCTTCTATCTTTCATATTCGCCTCTGCTCCGACAAA
GAAAAAAAAAAGCAAGTAGGACAAAATGACTGAGGTCAAATGGCACGAGTGAGCTCGTCCTAGAA
GATTCATACTAAATCTATGCCACTAGCTCGACGTCCCCCATCTCCTTCGAGAAATGGTCCCACTT
CTTATTCCATTGCAGCAGGAAATAAAGTAAGAAAGGCAAGGGCCAATTGCTCTGACTTCCCTCGG
TCGGGTATCTCTTCCGGGGGGCTTAGGGAAGTAGTTAGCAAGCTTGTCAACAAGTCAAGTTAGTC
GGGAGACATGGCTAAGGCTTCTGATTAGAAAGTATTCGAGATCGAGAGAAGCTAGACTTTTGATT
CTTCCATGAGCTTATAAAGGCACTGTTCGCCTTTAGGCTGAAGCT
Found at i:877098 original size:18 final size:18
Alignment explanation
Indices: 877075--877109 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
877065 GGGAATACCA
877075 ATATATATTAATATATAT
1 ATATATATTAATATATAT
877093 ATATATATTAATATATA
1 ATATATATTAATATATA
877110 GAATATATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATATATTAATATATAT
Left flanking sequence: Indices 876575 -- 877074
ATGTTACTTGTTAGATTTTTAAGTTAGATTCAATAGTAAAGTATACAATAGCTATAGTCTTATTC
TTATATGAAATGTTACGTTACTTATTCTATATATTCTTATATAATTGTGATTATAATCCGATACG
TCACTATGAAAATTTTATTTGTTATGTTTATAAGTATAAGGTCTATTGATTGCGCTCGGGCTCCT
GTATCGGGGGAGCCCTGCGCTTACTAGAATATTCATTCTCAATTCCCCTCTTATTAAAGTAATTT
TTCTATCTAAAAAAAGAAAGCGAAGCAACGAAGCGCTAACCAGACTTACAAACCAGAAAGCAAGG
AACCGAACCGCTAACCGTACCAACAAGCCGATCAGCCCTCGTACTTCACAATCAATAGCTACGGG
ATTCGCGAGCTAACTAATGCTAATGATGGCACCCAGATTCTAGCTTAGATCGATGGGCCTTACCA
GATTCGCAAAACATCTGACCGGCTACCAAAGACAGGGGAATACCA
Right flanking sequence: Indices 877110 -- 877609
GAATATATCGGGCTTTTCTCGCTTGTTTAGTATTGCTTTTTCTTTTTATAGGAGTAGGTTTAGGT
TCTTGCGGGGTTGGCTTGTTAGTCGTAGATCTTCTATCTTTCATATTCGCCTCTGCTCCGACAAA
GAAAAAAAAAAGCAAGTAGGACAAAATGACTGAGGTCAAATGGCACGAGTGAGCTCGTCCTAGAA
GATTCATACTAAATCTATGCCACTAGCTCGACGTCCCCCATCTCCTTCGAGAAATGGTCCCACTT
CTTATTCCATTGCAGCAGGAAATAAAGTAAGAAAGGCAAGGGCCAATTGCTCTGACTTCCCTCGG
TCGGGTATCTCTTCCGGGGGGCTTAGGGAAGTAGTTAGCAAGCTTGTCAACAAGTCAAGTTAGTC
GGGAGACATGGCTAAGGCTTCTGATTAGAAAGTATTCGAGATCGAGAGAAGCTAGACTTTTGATT
CTTCCATGAGCTTATAAAGGCACTGTTCGCCTTTAGGCTGAAGCT
Found at i:926678 original size:12 final size:12
Alignment explanation
Indices: 926663--926696 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
926653 CGTTGACTCG
*
926663 GAAGCTGACTGT
1 GAAGCGGACTGT
926675 GAAGCGGACTGT
1 GAAGCGGACTGT
*
926687 GAGGCGGACT
1 GAAGCGGACT
926697 TAAGAGCTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.18, G:0.41, T:0.18
Consensus pattern (12 bp):
GAAGCGGACTGT
Left flanking sequence: Indices 926163 -- 926662
AGACTTCAACTTGAGACGACTAGCTGAAGGAAAGGAGAGACTTCCGTCCCGTACGTGCCTTCCCG
TTCCTTCTTACTTTTGTCCTACTCGAGCTTCTCGCAATCGTCATAATAGGAATAGGAGCGGGTGT
CAAAGGAGCAGGCAATTGCAGAGCCTTCTCTTGTTAGAAATAAGAATCGGCATAAGGAAAGCGTA
ACCGTCAGTGCTGCTGGTACTCGTAAGTCAGCTGGCTACTAGGCAACTACCCCTCCGGTTACCCT
CGCCCTATGGTTACTCGTCACTGCTCCTTCGGAGCCTCGCTCTACTAGTTGTTAGTATGAATAGG
AAGATGAAACGAAGGCACGGAGAGAGACTACTCCATTAATAAAAAATTAATTAATAGGCATCTTC
CGCAGGCTTTAGATCGTCTCACTTGGAGGATTTGAAAGACTTCCGCCTGGTTACCATTTCGTATG
CCTGAGATGAAGACCATAATACCCTTTCCTATTCTCGTTGACTCG
Right flanking sequence: Indices 926697 -- 927196
TAAGAGCTGACTTGCTTCCTTTCCTAAGAAGAAGGAGGGGATCCTTTTGCTGAACATCATCTCAT
CTAGTTGAGCGAAGGGATCCAGTTGCTTATGCCTTTTGTTAACACTACCTTATGTAGACCATTCC
ATACTAGTGGCGCGAGGGGAGAGTGACAATCGACCTCGAACTGTTGTTATTCTTATTCCAATCAC
TCGGTTCGTAATAAGGTATGTAAAGGCTGGAGCCGATGCACCTTCCGCGTCAGAGCAATCTCTCG
GTTCAAAGGAGGGGTGAGCAAATGTATTTGTACTCGAGCCATCTGCGGCATCTCCGAATAGGCCG
GGAATCCGCTCCATCTGCTTTCTCTGGCGGATTGAAGCCGACTTCCCAGGTGCAGTTCCGGGCGG
AGAACCACTATTCGGTAAAGCAGAAGCGGGAATGGCTGCATCCGGGCGGGGCGAGTACCCGGCCA
ACTCAACCTCTACAGGTGATCTCAATGGATCGAATGATTGGCATC
Found at i:938357 original size:28 final size:28
Alignment explanation
Indices: 938317--938373 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
938307 GACAAAACAA
938317 GCCTGTGTGGTGGAACCTAGAACTTCAG
1 GCCTGTGTGGTGGAACCTAGAACTTCAG
938345 GCCTGTGTGGTGGAACCTAGAACTTCAG
1 GCCTGTGTGGTGGAACCTAGAACTTCAG
938373 G
1 G
938374 TGCTACCTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (28 bp):
GCCTGTGTGGTGGAACCTAGAACTTCAG
Left flanking sequence: Indices 937817 -- 938316
TCTTGGCTGCTTGCCAGGATACTGCCTTGAGTGGACCCTTATTATATTACTCAGGCAATTTGTTC
AAACTCTATCAGGACCTGCTTTCACATGGTACAGCAAGTTAGTTCCGGCCTCTATCACTTCATGG
GAACAAATGGGGGATGCATTTATCACACGGTTCTACAGCACCCAAAGAAGTGTGGGAATCACGGA
GTTGACTCAAACTGAAGAGCAGATGCATGAAAAAGCAGCCGATTTCATCAACCGCTGGAGGAATC
TAAGTTTACATCGTCCTCAACCCATCACTGAGTCAGAAGCAGTTCGCATGTGCATGAACAACCTT
CGACCAGACATGGCGGTATATCTACAAGGTGTACGGCACATCACTTTTGAAGAGCTTGCTTCCAA
AGCCACAGATATTTAGACCTCTCTTAGTCACATCGCCCGACGATCTAAGTTCGTTGATAAAGTGA
TTGATAAAGAAGGAGAGAACTCCTGAGAAGACACAGACAAAACAA
Right flanking sequence: Indices 938374 -- 938873
TGCTACCTCAGATGAGACCAAGATAAACTTCTAGCCAAGTAAAGTAAGCTCAAGCCGAATCTTCT
CAAAGAATAAAGGGTCCTCAAAAGTTTCTAAAGGAGAAGGGCGAGGTTTTAATTCCTGACGAAGA
AGTAAATGTCTTATTCAAAGGATTGAGAGAACTAAATCTCATCGAGTTGTCAGACTCTAAGCGTC
CACATGAAGCAGATCGTGTAGGGGATCCACTATATTGCCCTTACCACAGGGTTTTGGGACATAAG
ATCCAAGATTGCTTTGTCCTGAAGCGCAAAACAAAATCAAAAGGCTGATAAATGAAGGAACCATA
GACGCCGAACTCTTGAAGACTATAAAGAAGGGTAAGAAGGTGGCTGCATCTAACATGGCGACTTA
TTCTTGCCTCACGATCGATGTATTCGACGAAGATGATGGCCCACTCCACTTCCCGGAGGAGCCAG
TTTATGTCAACAAGATAACTCTAAGGTCGGGTACTCAATTACCTG
Found at i:941180 original size:21 final size:21
Alignment explanation
Indices: 941126--941181 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
941116 TCTACCAGTC
*
941126 CCAGTATTTGTCTATGGATAA
1 CCAGTATTTGCCTATGGATAA
** * * *
941147 GGAGAAGTCGCCTATGGATAA
1 CCAGTATTTGCCTATGGATAA
941168 CCAGTATTTGCCTA
1 CCAGTATTTGCCTA
941182 CCCATCCTAG
Statistics
Matches: 24, Mismatches: 11, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (21 bp):
CCAGTATTTGCCTATGGATAA
Left flanking sequence: Indices 940626 -- 941125
CCATTCAAGGGGTGAGCAATGGTCATCTGGTTGTCTGTGGCCACAGTGGAGGAGGTTTGCTTTGG
ATCGGGGTAATAAGATTATCTCAAATCTTTGTCTTGAGGAATTTGAGGCAAAGGTTGGTCCGAAG
CTGCCTTCCTACCGGTCATTGGAATTACCACCAATTACCGGCCGACTAGGACAAACCCTAGAAGG
GGGAGGCAAGAGACGGATAAAGGAAAGACTCTCTCACCGAAAACAAGTACACGAAAAAATGACTA
GTGCCCGATCGAAATGTCACGTATGGTACTGCCGAGCCAGCTCCCGGAAGAGCTAATTCGGATAG
TGAGTTAAGTATAGTACTTTTTTCCTCTCTCCTCTTGTAACAGGCTAGTGTTTTCAAGCCTCTCG
TTATTACTTGAGCTCCCTTCCTTGGGTCCCATCTCCTGCTTTTTTCAAAGCAGCTATATTTGAAT
TGAATCTTCTGGAGTTCGATAGCCAGGTAAGACTTTCTACCAGTC
Right flanking sequence: Indices 941182 -- 941681
CCCATCCTAGAAAAAAGTGCTTCCCTTTCATAAGGCTCTAACTAGCTAAAGGACTAAACGAGCGT
AAGGAGCATGCCGGGACTTAGAGGACTATCTTGGATAGCTTTTCTCCTAGCGAACAGCAGAGATT
GTGATTCCATCTAAGGAGCTAACTATTTCAAGGTTTATTGCTACCCTCTATTTATTCCTTTTTAT
TGTCCCCGTGTGAGTATGCCGCATATGAGTAGTCCCTTCCCATTGTAGGAGGGAAGGAGGATTCA
TTCACAGATGCCCTGCCCCTAGCCCTACCATGGAAGAAAGATATAGCCCTACTGAGAAAAACTAT
ATGAGCCCTCAAAGGTAAAACAACCATGTCGTAAGCCCAAGTCAATCCCTCTCTTCGAATTATCT
TTGCTTTGCTATTTCATCTGAATCCCGATCTTTGCATCCCTCTCTTTTTGAATGTCCATCAAATC
CTAAGGCTAGCCAGTAGAAATACCTTTCTTTTAGGAGAGATCCCA
Found at i:944573 original size:24 final size:24
Alignment explanation
Indices: 944552--944599 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
944542 AGAAGTTCCT
944552 CTTTAACTCCTTCCTCTGGTTCTG
1 CTTTAACTCCTTCCTCTGGTTCTG
* * *
944576 CTTTAACTTCTTCTTCTGATTCTG
1 CTTTAACTCCTTCCTCTGGTTCTG
944600 GCCTAAATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.10, C:0.29, G:0.10, T:0.50
Consensus pattern (24 bp):
CTTTAACTCCTTCCTCTGGTTCTG
Left flanking sequence: Indices 944052 -- 944551
AGATCATAAGCAGATCTTTCTCCTATGTCTCGTATTATCTTATAATAGGAGCACGCCTGCTTTTA
GCTATTAGTTTCACTCTTGCTTTTGCCTTACCCTCTATTATATTAGTAAAGGGCGAATGAGGGGC
GGGGAATAGGAGATTATAGAGCAACTGAATTAACAAGAAGAGAATCTGGCGCTTCCTCTGATTTG
GCAGCTGCTGATTCAGTAAGAAGTTAATCTGGAACAACTTACTTTGCCTTTGCATTCCCTATTGG
CTGATTCAGTAACAACTGACTTTGCTTTAGCAAGTTCCTCTTTAACTGACTTACCCGATTCGGGT
TCTTCCTCTGTAACTCCTGACCCGGAGTCAGTACTAGGACTTTCCGCTTTAACTTCTTCTTCCTC
TGAGGGAACAACTGATTCAACCGATGAGTCTTCTTCCGGTTCTGCCACTGAGGCAAGAACTTCGT
CTTTACTTGCTTTAGAATCTGTAACAACAGTAACAAGAAGTTCCT
Right flanking sequence: Indices 944600 -- 945099
GCCTAAATCTATTTCTTGAGGCTTCCTCTACCCTTCCTACTAGGATAGGAATGCCAAAAACAAAG
AACCGGGATACTAAGATAGGAAGGTTTCAAAGTCAGCTAAAGCAGCTAAAGAAGCTGAGCTAGCT
CGGAACAACCAGATAAGTGACCCATTCGATGGAATGACTGGATTTGAGAATGATGGTATAAAGAA
GCTCTGCTGCTCATATACGCCCGTCTTCTGATCAGTAGGCGAGGCCTCACTGAACTCATTATGAA
TAGCTGGCGAGTCCCCTATCAGTACTGCCAAAGACAATCACTAGGAAAGAAACTCCTGGAGAGGA
TCACTCTCCGAACTCCCCTCACGGATCAGAACCGGAAAGCAAAGCAGACACGTCCCGCGCTGCCT
GCCCAAGAACTAGGATCAGCTCCTTTAGGCAACTTTAGCTACCCGGAACTATATATAGAATAGAT
AGCCCGAAAGCATGGAGCTTCTTGTCCCATTTTATGAATCGAGAT
Found at i:945435 original size:17 final size:17
Alignment explanation
Indices: 945397--945435 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
945387 TTCAATCAAC
* *
945397 GAATAGGTTGTATAGTA
1 GAATAGGTTGTACAGGA
*
945414 TAATAGGTTGTACAGGA
1 GAATAGGTTGTACAGGA
945431 GAATA
1 GAATA
945436 CAATACGTTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.31
Consensus pattern (17 bp):
GAATAGGTTGTACAGGA
Left flanking sequence: Indices 944897 -- 945396
TCACTAGGAAAGAAACTCCTGGAGAGGATCACTCTCCGAACTCCCCTCACGGATCAGAACCGGAA
AGCAAAGCAGACACGTCCCGCGCTGCCTGCCCAAGAACTAGGATCAGCTCCTTTAGGCAACTTTA
GCTACCCGGAACTATATATAGAATAGATAGCCCGAAAGCATGGAGCTTCTTGTCCCATTTTATGA
ATCGAGATTGAAAAGTGTTTCGAATAAACGTCACAAAAACACGGGTTTACGCTACGTAAACCAGC
TAAATCGACCTGAAAATGCTATTCCCTGATCGGAGAATGAATTGCTTGCGAGTCCCTGTGGTGAA
GACTGATCAGAGCTAAGCTAACTCAAGAAGAAAGAAAGACAGAATTCCATGACAGATAGAAAGAC
CGGGCTTCGCTATAGCCTATCGGGCTAGAACCCTATCGAAGAAGTGGTATCGAATACGTTCCACT
TGAGTATACGTTGCTCAAACACGAGAATCAGTGGTTTCAATCAAC
Right flanking sequence: Indices 945436 -- 945935
CAATACGTTGGTCTCATTCCATCCATATAGCTAGAACGAATCAATGGCTACACATGCGAATCAGT
TGCTTGCTATAAAAGAGAATAAGTGGCTACCACCAGAGACAAAAGCGGAGGCGGCTCACTCGAAT
CTATCCAGTTTAGGTAATTCGACTTCAAAGCCAGTTTCGGAAGAAAGGGGTAGATATCCATTTAA
AAGAGGAAGCGACTTTAGATATCTTCAAATAGAAGAAACAGGCTACACGCTAGCTGTCGTATACG
CCCGTATAACTCTAAGCCAAAGAACAGAACCAGAGGAACAACCAGATCCGGGGAAGATGTCCCAC
CCATCACTAGAAAGAGGACATTTCTACTTAGTTGACTCTTTCTGGAAGGAATCTCTACTCCACTT
GTCTAATCATCATCTCCAAACCAAGTTTCTTCCTTGGATGACCCGTCAGAAGGGAAGCTACAAAG
CATATATAATAGTATGAATGGAACGATCGCTCTTACTGCGGTTTT
Found at i:956874 original size:19 final size:19
Alignment explanation
Indices: 956831--956878 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
956821 GGCTTTTTAG
* *
956831 GTTCTTTTGCGGGATAAAG
1 GTTCTTTAGCGGGATAAAC
* *
956850 GCTCTTTAGCGGGATAACC
1 GTTCTTTAGCGGGATAAAC
956869 GTTC-TTAGCG
1 GTTCTTTAGCG
956879 TAATAAAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (19 bp):
GTTCTTTAGCGGGATAAAC
Left flanking sequence: Indices 956331 -- 956830
CAACTCTTTCTTTCCTATATCATCTCAATTCTAAACTAAGGAAGAAATACAGAAGATTATATAAA
CCAATAAGAGGAAGAGATCGGGCTCGGACACTGAAGCTCTATCCTAAGAGTAAGAACACTATAAA
AAGAAGACCGATTGAGTGGTTCGGCTACTCAACCTCGCCGGGGCAGGAGCTCTAGACAGTCTGGA
ACTATCTCTACTGATACAGGCCTACCCTTAACGGCCCTCAGCCTATCGGTGGATCTACTATAGTA
TAGGTATATCTTTCAGAAGATCATTATAGAGAATGAAGCACGAAATTGAATAAGAGAATTAGTCT
ATCTCTAGCTCTCGCTACATCTAGTTCGCTCGCACGCTCCGTTCGCTCGTTACTCGTATTCCACT
CGCTCGTTCCCTCTACCTGTCGTACGAGCATCTTCAAAGCAGACTCTATCTTTTCCCCAGACTCT
AATCTGTCCTAAAGCCCTTACTCTTACTCAAATAGGGCTTTTTAG
Right flanking sequence: Indices 956879 -- 957378
TAATAAAACCTGCGAGTCTTAGTGCTACAGAATCCCCTGCTCGTGGAAGGTTTGAAGGAAGAATG
CGCAGTTAGAAAGGTAACTATCATCTCAGATTCGAAGAGGGGAAGGGCCATTTCGCCTATTTCAA
CAGAATCCGATTCGAGAGCAGATAGAGCAACTGTCCAATCTCGCTCGGGTAAATGATGGGCTCTT
AGTGGGCAATCCCCTGTTCTCTTTGCTGTTGCTTGAGAATCCGCAGAAGTGCTTAGACGATACCT
AGCATCTCTCAGCTCAGATTCGTCCGGTCTTAGCAGCAAATAATCCTTCCTCCGAAGATGGACAG
CATCCGCTCTTTGACACATCGTATCCCGTAATGGGCATGGTATCCCCATAGTCAAAGCAGAGAGA
AAGAGAAGAGTTAGAACAAGAAGGATTAGTTAGCACTACCCCAGATCCATATGCATAGTCAAATA
AGAGGGTAGACAGAGGTGCAACCTTATTGGCTTAAGCATCCGATT
Found at i:959994 original size:21 final size:21
Alignment explanation
Indices: 959963--960012 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
959953 CTTCCATCCC
*
959963 AAACAGGTTATTCTCCGCTCA
1 AAACTGGTTATTCTCCGCTCA
* * *
959984 ATACTGGTTATTCTCTGGTCA
1 AAACTGGTTATTCTCCGCTCA
960005 AAACTGGT
1 AAACTGGT
960013 GACTCTCTCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (21 bp):
AAACTGGTTATTCTCCGCTCA
Left flanking sequence: Indices 959463 -- 959962
GATCCACTAGTGGACTCTCCCACCCGTGAGCTTAATGCTACCGCGGATCCTTGACTACAGTTCGT
TTATCGGCTCACCAGGACGAGCTCTACCCGATTCTCCTACTCAATTTATGAGACTTTTATAAGCC
AAAGTTAAGCGCTTTCCGTTGGTTCCTCTTTTTTGGTGATTTGTCATGATTTTCGGACCCTCGTA
AGTTAGAAATGGGGGGAAGGAATAAAATCCCGGGAAATGGTCCCACTTTTTTGTCTTCCTCTCTT
GGAAGCACAAAAGACCGGGGTTGGAGAAGATGTTTACCCTGCCCTGACCAATGGCTATACTTGCA
TGCATCTTTCCCCTTCACTAGCTGGTAATTGAGAAGGCACCACACTCAACTTGCTAACGATGAGC
ACAAAGTCAGGAATGGGTTAAGGGATGCCGTTATGGTTGCTAATCAGTACTGGTTGGTAGGCCAA
GGTCTTCGAACCTAGGATGAGACGTAGATTCTTTCCTTCCATCCC
Right flanking sequence: Indices 960013 -- 960512
GACTCTCTCCCGATCGAGAAGTTGAGTTCCAAGGCTTCAGTCTCAAAGCCAGATCGAAGGAAGAA
TAGGCATCTGAGGAAAGAGATGAGAGAGAGGAAGTTGATGCGATGTAGATGCCCACGGAGCGGTA
GGCTTTATGCCTTTGTAAACCCCCTTAGTAGTTGTTGTTAGTTAGGGGCATTCCTTATTATCTCT
CTTAAAAGGGGAGGGTGAAATGCAGAGGATGGACTGGAGGAAGCAAGAGAGGGGGATGTTCCCAG
ATGCTCGGAGATGCCCGGGTGAGGTGGGGACACCAACTCATTACAGCCTTAAGTGCTGTTTCCCT
TCACTAAGAGAAGGAACTCATTTAGACTTGTTCCATTGTTAGGAGACCCCGAGCCAGTCAAGCAA
GTAAGGCGAACCACTCCACTCATTCGAGTTAGAGCGAATTCCTTCTCATTGCCAATCCGGTGCTG
AAACCCTGTTTAAAGTCTCTTGTTAATGTCCCCACTAAAGGATCG
Found at i:960019 original size:21 final size:21
Alignment explanation
Indices: 959981--960020 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
959971 TATTCTCCGC
* * *
959981 TCAATACTGGTTATTCTCTGG
1 TCAAAACTGGTGACTCTCTGG
960002 TCAAAACTGGTGACTCTCT
1 TCAAAACTGGTGACTCTCT
960021 CCCGATCGAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCAAAACTGGTGACTCTCTGG
Left flanking sequence: Indices 959481 -- 959980
CCCACCCGTGAGCTTAATGCTACCGCGGATCCTTGACTACAGTTCGTTTATCGGCTCACCAGGAC
GAGCTCTACCCGATTCTCCTACTCAATTTATGAGACTTTTATAAGCCAAAGTTAAGCGCTTTCCG
TTGGTTCCTCTTTTTTGGTGATTTGTCATGATTTTCGGACCCTCGTAAGTTAGAAATGGGGGGAA
GGAATAAAATCCCGGGAAATGGTCCCACTTTTTTGTCTTCCTCTCTTGGAAGCACAAAAGACCGG
GGTTGGAGAAGATGTTTACCCTGCCCTGACCAATGGCTATACTTGCATGCATCTTTCCCCTTCAC
TAGCTGGTAATTGAGAAGGCACCACACTCAACTTGCTAACGATGAGCACAAAGTCAGGAATGGGT
TAAGGGATGCCGTTATGGTTGCTAATCAGTACTGGTTGGTAGGCCAAGGTCTTCGAACCTAGGAT
GAGACGTAGATTCTTTCCTTCCATCCCAAACAGGTTATTCTCCGC
Right flanking sequence: Indices 960021 -- 960520
CCCGATCGAGAAGTTGAGTTCCAAGGCTTCAGTCTCAAAGCCAGATCGAAGGAAGAATAGGCATC
TGAGGAAAGAGATGAGAGAGAGGAAGTTGATGCGATGTAGATGCCCACGGAGCGGTAGGCTTTAT
GCCTTTGTAAACCCCCTTAGTAGTTGTTGTTAGTTAGGGGCATTCCTTATTATCTCTCTTAAAAG
GGGAGGGTGAAATGCAGAGGATGGACTGGAGGAAGCAAGAGAGGGGGATGTTCCCAGATGCTCGG
AGATGCCCGGGTGAGGTGGGGACACCAACTCATTACAGCCTTAAGTGCTGTTTCCCTTCACTAAG
AGAAGGAACTCATTTAGACTTGTTCCATTGTTAGGAGACCCCGAGCCAGTCAAGCAAGTAAGGCG
AACCACTCCACTCATTCGAGTTAGAGCGAATTCCTTCTCATTGCCAATCCGGTGCTGAAACCCTG
TTTAAAGTCTCTTGTTAATGTCCCCACTAAAGGATCGTAGGTGCA
Found at i:965270 original size:12 final size:12
Alignment explanation
Indices: 965250--965288 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
965240 ATCGAACTTT
* *
965250 CGTAGAGGAGAA
1 CGTAAAGGAGGA
965262 CGTAAAGGAGGA
1 CGTAAAGGAGGA
965274 CGTAAAGGAGGA
1 CGTAAAGGAGGA
965286 CGT
1 CGT
965289 CTAATGGCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.38, C:0.10, G:0.41, T:0.10
Consensus pattern (12 bp):
CGTAAAGGAGGA
Left flanking sequence: Indices 964750 -- 965249
TTCGTGGGTCAAGCCCAGGGCGAAGATATTTTTATTTTGCATCAAGAACTCTTTCTATTATTCCC
TTTCATCTTCAGATAGGTTAGCACTGATGAACCTTGGTTCTTCACTTGTGCCAAGATTTATTTCC
GTCGACCGTTGCTTGACCACCGTCTTCTAGTTTCGGGGGAGCAGACTGAACTTCTATTAGTTCAC
GAGATTGAGGATATTTTTCCGACGAGTTGCCTTCTTGAATTTCTACCATGCGAACGCTTGCTTGA
GAGCCCAAACCGCGAGTTCCGGATTTGAGTTCTCCATCATGATGCAAGACCCATTTTTGTTCTAG
GGTTAACATGTGTTCAAATGGTTTTTTCTCACCCCTTCCTCTACACAGCCCTTCACGGATCATAG
CCCATTTCCGTCATCAAGTGAATGACTTTAGAATCATGCAACAAAACGGGGAGTGACGCTTCACG
ACCTTCCCTTCATTCTTGTCGACAGTTGTGGGGACATCGAACTTT
Right flanking sequence: Indices 965289 -- 965788
CTAATGGCAGGGCGTCTCCTTTTCCGTCTTCTCCCCGCCTTAGTGGCATCAACTGGTATGACCAC
GTTTGGAGAGATCTTGAGTCTTAGACATGGAACCTCTTCGAGAGAGACTCCTGATATTAAAGATG
GGATCACTTTCCCGACGTTGCTCACTAGGGATGTAGCGATACGTCTTCTTCATGCTTGGCCTGCG
ACCTGCTTCTTCTTCAATATTCTTCTTTCATTTTTCCGAGAAAGCCATTTGATCTGGAGGTGTAG
GAGCAGGCTTTCGCAACTCGGCTCTAAATAGAATTTCGAATCTAAATAGAAATAACCCTATGAGA
TGAGATTGAAAGGCTGTCAACCTGACGACCCGGATAGGAATAAATATCCCTTTCTGGTGATGATG
GATCAGAGTTTAGAGAGCATCGTCGGATGTTCACATCAGAATCTGCGGATGATGCATGCATCTCA
GTTAGGTATAAGGATTGGTTCAGTCTTGTCTGCTGCTTTCTTCTC
Found at i:1011508 original size:24 final size:25
Alignment explanation
Indices: 1011481--1011528 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
1011471 ACAACAACTA
1011481 CGTA-GATTCGCTAGCGACTACGGC
1 CGTACGATTCGCTAGCGACTACGGC
* *
1011505 CGTACCGATTGGCTCGCGACTACG
1 CGTA-CGATTCGCTAGCGACTACG
1011529 TACTACTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
26 16 0.80
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (25 bp):
CGTACGATTCGCTAGCGACTACGGC
Left flanking sequence: Indices 1010981 -- 1011480
TCAAATGCTTTCCCTTGGCTTCGGTGCCAGCTAGGACTGGTAGCATGCTTAATGGTAGCATGGTC
TTCTCTTAGGGTTTCTCTTGGATTCGGAATGGGAGCTGCTCTTGCGAGCGACTCAGCTGCAATTG
GAATGCTTTCAATGGCTATAAAGCCTATAAGGTGCGTGCGAAGCGAGTCTTTAACCCGGAAGTGA
CCGAGGGATTCTGTGTTAAGCCCTGTTGCCAAATCTTGTTTAATCGAGGTAGCTCGAGTGAAGGT
TTTTTTCTGTTTCAGCTCTTCTTCATTTGCGACTGGGAATTTTCTTTCCCGGGCCGAGCCGGAAT
TATGTCTTATCTTAAAAAAAAGGGCAGGCAAAGCCCTCTGCTTTAAACCTTTCTTCAGAGTTCTA
GCAAGCCCTTTTTTCAATGCCCGGGCATCCATGCATTCTTTTCGATATAGTACGGTACACTGAAC
ACCAACCCAATCTCGAATGGATAGAACGAAAAAAAACAACAACTA
Right flanking sequence: Indices 1011529 -- 1012028
TACTACTGATGGCTCGTTCCGGCCGATACGTACTGCGAGTACTATGTACGATTTATTCCCTTAGC
GCCTGTCCTATGAGCCTATGACTCATTAGTACCTGTTAGCGCAGATTGCTATCGTACCCTTAGCG
TGCACTTAACCTTCCCTTATTGCAGTTAAGTTAACATGTTAATAAAGAAGTTTTCCAGTGACTAT
ATGAGAGCAAATAAAAGCCAATAAGAGAGTGTGAGTGTTGATTCCACATCTCCTCAAAAAGCACC
ACACCATGCGCGCAAGCAGCCACTGGTCCCGAAGCAGAATCCTGAATAGCTCCCTTTTTTGGGGG
AATGAAAATAAGCATAAAAAGAAGAACAAGCTTGTCACGAAGGCAGCCTTTTTCCTGGGGTTGGC
TCGGATGGGGAAGCTGCTTTTCTTAGAACAAACGCTTTTCCGTCTGGGTATGCAACCACCTTGGA
TTGCTGTTGCATATTCAGCTCCTGCTACTGCTGTTTTCTTGATTG
Done.