Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_050950
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 680480
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Found at i:53 original size:24 final size:24
Alignment explanation
Indices: 26--97 Score: 144
Period size: 24 Copynumber: 3.0 Consensus size: 24
16 AGGGAATCTT
26 GCGCAAGAGTCGAAGTCAGCGAGC
1 GCGCAAGAGTCGAAGTCAGCGAGC
50 GCGCAAGAGTCGAAGTCAGCGAGC
1 GCGCAAGAGTCGAAGTCAGCGAGC
74 GCGCAAGAGTCGAAGTCAGCGAGC
1 GCGCAAGAGTCGAAGTCAGCGAGC
98 ATTGAAGCGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.29, C:0.25, G:0.38, T:0.08
Consensus pattern (24 bp):
GCGCAAGAGTCGAAGTCAGCGAGC
Left flanking sequence: Indices 1 -- 25
CGAGAGTGAAGCGAAAGGGAATCTT
Right flanking sequence: Indices 98 -- 597
ATTGAAGCGCTAGCCCAACTTAGGAGCACTGGCCTCACGGTTTTGATTATCAAGGTAGGTCTTGA
AGGATGGAATAATATTACTCCTACTTCGAAGAGTTAAGCTCGATGGCTAGAGGGTAACTTGGCTG
GCAGAGAACCCCCCTAGGCTTGACTTCTCTAGTTTACTTTCCTTTCTCTTGTTGAACTAGCTTAG
TAGGCCCTTGACTTTTACAGGTAGTACTGCTAGCCCTTAACCCCCAGACCTGAGAGCTCACCCGC
TTCCTTACTCACTGGCACTGAAACTAGATCCCTTGCCAACTTCTTAAACTCAAACCCCGGAAACT
CCACCTCCAACTCAATCTCCAGGGAATGAAACTGGCCCTATTAATACTGGGTGGAACTGGCACTG
TACTTATTAAACCCCCAAAAAGGTCACCGCAATTGACTCGCAGGCAGAAGTCTCCGAATAGCCCA
GTAGAAAATATGCTACTTCTCCCCCCTACTCTCGTCGAAGGAAGA
Found at i:1407 original size:28 final size:28
Alignment explanation
Indices: 1375--1450 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
1365 TGGGAGCAGC
* *
1375 GTGGGAGCGCAACCGCGTGGCACGAGTA
1 GTGGGAACGCAAACGCGTGGCACGAGTA
* *
1403 GTGGGAACGCAAACACGTGGCACGAGTC
1 GTGGGAACGCAAACGCGTGGCACGAGTA
1431 GTGGGAACGCAAACGCGTGG
1 GTGGGAACGCAAACGCGTGG
1451 GAGCGCAGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.25, C:0.24, G:0.41, T:0.11
Consensus pattern (28 bp):
GTGGGAACGCAAACGCGTGGCACGAGTA
Left flanking sequence: Indices 875 -- 1374
GAAATGGTAGCAGCGGGAAGCAAAGCCAACGAAAAGGCATCTCATTTCATTGATGATTTCGACCC
AGGTTAACCGACATTTGAGAGAAAGGAAGTATTTCATTTAATGTCAGTCTATCCGCTGTTCAATT
ACATTTACCGTTGTTGGGATCTTTTCCGCTTCCCTTGAATCAGCTGTTGAGGAAGGAAGTGACAT
CATATATAAAGAAAAGGAAGAGAATGACCTGAGAGAAAGGGAATCATCATAGGCTGTGTTTTAAG
TGAAGGAGAGAGAGAGACAGGACTTGCTAGGAATTGAATCAATAGGCTCAGAAGGCGATTTCAAG
CTTGATTCGTAGCAAACCTTACCTTACTTGACTCTATCAATGACTTTGGAATCGACAGAGGATAT
TCATGTTCTAACTAATGGCGGATCTTCCTCAAAAGGAAGAGAACTGAGACGCTGTGGAAGGAAGG
AAATGATTGAACATAGGGAAGGCAACTGCGAGTCGTGGGAGCAGC
Right flanking sequence: Indices 1451 -- 1950
GAGCGCAGAGGTCAAAAGATAGCAAGAATCTATTCAATTCTAAGCACTCAAAGGCGGGTTAACTA
GTCAAGAACCAGAGTCTGTAGTGCGCTTCAGAGAGTAGGAAATAGCGGTGAAAGCTTCTTCAGGT
AATGCAATTGCTCTATAGGCGGGTAGTTCTCGCGGCTCAAGGGCGAGTGCGAAAGCAAGGTGCCA
TGCCAAGGAAAGACAATTCTGAGGTAGGTCAACTTCGATAGCAGTTTGATTAGCTATTTCGGGTT
GTGATCGCATTTCCGTGACTGGCACTTAGATACTGAAATTAGGTTATCCTCCTTAGAAGTCTCAC
AGCTATCGTATCCCGTCAAGCAGTATCCGTTCTTGGTGTAAGCGTAACCGGTCGGTCTTTTTGCT
CTTGTTTGCGTATCAGCTCAAGCAGTTACCGCAGCTGGTTGAATATCCTTTGCTATTGAATCAGC
TCCTGTTAGACCATCTATAGAAGAAGCTGGTATAGACATAGGCTG
Found at i:2103 original size:27 final size:27
Alignment explanation
Indices: 2073--2127 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
2063 CACATTCATA
2073 GGAAGAGAAAGATCTGTTCGCTACTAC
1 GGAAGAGAAAGATCTGTTCGCTACTAC
2100 GGAAGAGAAAGATCTGTTCGCTACTAC
1 GGAAGAGAAAGATCTGTTCGCTACTAC
2127 G
1 G
2128 CTCGGAGACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (27 bp):
GGAAGAGAAAGATCTGTTCGCTACTAC
Left flanking sequence: Indices 1573 -- 2072
CTTCAGGTAATGCAATTGCTCTATAGGCGGGTAGTTCTCGCGGCTCAAGGGCGAGTGCGAAAGCA
AGGTGCCATGCCAAGGAAAGACAATTCTGAGGTAGGTCAACTTCGATAGCAGTTTGATTAGCTAT
TTCGGGTTGTGATCGCATTTCCGTGACTGGCACTTAGATACTGAAATTAGGTTATCCTCCTTAGA
AGTCTCACAGCTATCGTATCCCGTCAAGCAGTATCCGTTCTTGGTGTAAGCGTAACCGGTCGGTC
TTTTTGCTCTTGTTTGCGTATCAGCTCAAGCAGTTACCGCAGCTGGTTGAATATCCTTTGCTATT
GAATCAGCTCCTGTTAGACCATCTATAGAAGAAGCTGGTATAGACATAGGCTGTTTTCAGGGCAA
ATGTGACAGAAGGAAGATAATAATGAAGCTTTTCTCTCTTTCCTGAAGCAAGGAACTTCTTGACC
AACTCCAATTCCAGTGGTATCTTAGAATAAGGCTGCACATTCATA
Right flanking sequence: Indices 2128 -- 2627
CTCGGAGACAAGTGTTCCAATCTCTTTTCGGGAAAGGACTAGGCAATGGCGGCGACTACTTCTTC
AGGATGGGGGATGGGCAGCAGTTTCCACGAGTTCTCTCTTTGTGTAGACGATGTGACTTCCGTCG
GACTTTTTGGAGTACTGATTGATGATGGAGTGCAACTCAATGAAGGAGTTTAGATGTCACCTTTA
TAATGTAAAGGGTGTCTCATTTGTCTCAGAAGAGTCTTCTGGGAATCGCATCTCTTTAGAATGCG
GGAATCGAAACGGTGCCCATACGGTCGGATAGCAGGCAAGACCTCTAGGTGCAAGCGGAACTCTT
GGTTCAGGAAGAGACTCATCTGGGGAGAGTTAGCAGATCATTTCCTCAAAGTAGTCCCACTGCTC
CCAGATTATTCAATAGCACTTTTTGCTTTTCATCGTAGAACTTGGCAATGGCGTGCCCATACCTC
TTGGAGAGTTCTTCCTGTAGGAAGTAGTATTCGTTATACTGCGCA
Found at i:2820 original size:16 final size:16
Alignment explanation
Indices: 2799--2830 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
2789 GAACCTGGAT
2799 TGGGAATTGTCTTCAC
1 TGGGAATTGTCTTCAC
2815 TGGGAATTGTCTTCAC
1 TGGGAATTGTCTTCAC
2831 AGAGAAGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (16 bp):
TGGGAATTGTCTTCAC
Left flanking sequence: Indices 2299 -- 2798
GAAGGAGTTTAGATGTCACCTTTATAATGTAAAGGGTGTCTCATTTGTCTCAGAAGAGTCTTCTG
GGAATCGCATCTCTTTAGAATGCGGGAATCGAAACGGTGCCCATACGGTCGGATAGCAGGCAAGA
CCTCTAGGTGCAAGCGGAACTCTTGGTTCAGGAAGAGACTCATCTGGGGAGAGTTAGCAGATCAT
TTCCTCAAAGTAGTCCCACTGCTCCCAGATTATTCAATAGCACTTTTTGCTTTTCATCGTAGAAC
TTGGCAATGGCGTGCCCATACCTCTTGGAGAGTTCTTCCTGTAGGAAGTAGTATTCGTTATACTG
CGCAGCTGCTATGACACCCATGTAGTCAAAAACAGGCCATCTGCTTCCAAAAGGATGAGACTTTT
TCATGAGACTTTTGGAAGGTTGCTCTATTGATGAGGTGAGGTAGCGCTTGCCATATCAGCCTTTT
CCGAATGGGTCTTCGTAATATGCCTTACCTAAGGGGAACCTGGAT
Right flanking sequence: Indices 2831 -- 3330
AGAGAAGTGAGATGGATGCTGCTAAAGGTAGAAGAAGCAATAGGCACGCTATCAGACCTCTCCTT
CTCAGTCGAGTAAGGGAAGGAGCCATAGCGAGAGGATTGACACTTTTCTCTTTAGATATGAGACG
ACGAAGCCGCCTTCGTCTTTCGCCTTTGCTTTCTTGGTATGGCCCATAGACTTTCCTTGCGGGAC
AGCTTACTATAGCTATAGCAGAGAGTCCGATTCACTCATTTCAGTAAAAGCAGTCCAGGCAGGTG
AACAAAAGAAAGGCCCTACCTTTAGTAAAGAGGGAAGGAGGAGCTCAATTCAGAAAGTGGACTCT
TTACGTTAAGATGAATCTAATCTATTGAAGACTCAAGGTTTCCAAGGAGCACGGATGAGGCGAAG
CATCGATCCCTAACAAGCGAGGTAAGCGCCCGGATACAAAGGAATCTTAGTCTATGTCTTGGTCA
CCCAGAAAAGTATTCTGAGATAGTTGAATTGAGGGACCTCTACTT
Found at i:18931 original size:14 final size:14
Alignment explanation
Indices: 18914--18940 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
18904 ACTCTTTTTT
18914 ATTAATTTCATTTA
1 ATTAATTTCATTTA
18928 ATTAATTTCATTT
1 ATTAATTTCATTT
18941 TCATTTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTAATTTCATTTA
Left flanking sequence: Indices 18414 -- 18913
GGAAGAAGAACTCAATCACGTAAGAGAAAAGAGAGCATAGAACCAAAATAGGGTTGTACAAACAA
GGACCAACGAGGATAAAAGAGGAAAAAGAGTAGGAGTAGAAGCTAGCTTGAAGTAGGGGCGGAAT
CGAAGCGCAGAAATTCTGAGTTCATGCCACGACGATCTATATGGAAGGGCAGTTTTCTTGATGCA
TTCCTGTTGAGAATGAAGAAGAAGAAAGAAAGCCTTTTGAACAGGAAAATTTGGTCACGTAGATC
GTCTATTTTGCCGGAATTCGTTAATTGCTCCGTACGAATTTACAATGGAAAAACTTCTGTTCGTT
CTAAGATCACTGAAGGAAAGGTTGGTCATAAATTTGGAGAGTTTGCTTCTACACGGAAACGAAGA
CTTTTTAGAACAAATATTAGACCAGGAAGAAAAAAAGGAAAAAAGTAAAGTCTAAGCGCATATGG
CAAGAAAAGGAAATCCGATTTCATATTTCATATTCACTCTTTTTT
Right flanking sequence: Indices 18941 -- 19440
TCATTTCATTTTAATAATATAATACAGTTAATACTAATAATAAAGAATTTCTTTTTTAATAATAA
AAAGATATGTGATTCTATCTGAATCAGACGAGCCGTCTCTAGCATTTCCATTTCGCGATTCAGAT
TCAGAGCGCGAATCTGTAGATTCCTAAGAATCTGAAGAGGAGATCTCTCTCGATCTCGAATTGAG
ACTCGCCCCCTCTAATGGAAAAATGGGAATATGTGCTTCTAAAAAATCTTTTAGACTGAACCCAA
TCCCATCCTTCTCGTTCGATCCGTGCTTTTAACGAATTACCACTTATTCTGTGGTTTCGATTCAA
AATAAGTGGTTGGGATCCTCTAGCCTTCTACCCCTTACTCTGGAGCAGCGGATTCGCCTACTTCA
AAGTCTAAAGTAAATAATCCGGATTTACTATCTTTCCTTGCGTGGAAGTAGTTCAAAGCTTCCTA
TAGATACCGGAGAGATAGATCCCAAGGAAGAAGTCCCGGTCGAGA
Found at i:23890 original size:18 final size:18
Alignment explanation
Indices: 23867--23902 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23857 CTATCCCTAT
23867 ATATAGACATGCCACCTC
1 ATATAGACATGCCACCTC
23885 ATATAGACATGCCACCTC
1 ATATAGACATGCCACCTC
23903 CTCAATGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.11, T:0.22
Consensus pattern (18 bp):
ATATAGACATGCCACCTC
Left flanking sequence: Indices 23367 -- 23866
AAATCAATATTCATTTTTTGTTTTGAAAGCATCAGTTATATGCAGATTTAGTGAGGACCGTTGCT
AAAGTCCCCGTAGGCATGCATTTCTTTCCCGATGTCTATACTCAAAGCCTCGCACGGACGTTTTA
TAGAAAAGATGGCGATGCCTAGGGACGAATAAGATTTGTGCTTAATGAATTCTTTTTTGATAACG
AAAGACATCATCCCATAAACGAGCTTTAAACTAACCCCCTAAAAATGAGCTCTAAGAAAGGAAGA
CGATAACCAGAGAGAAAAGTGTCACGGGCGTAGAGTTTGGGAATGCTTAACCCGTGCGGCACTTA
GACACTTGCTCCCTTTAGCGCCTAAGTCAGCCTTCCCAAATGTGCTAGCGTATTGCTAATTTGCT
AAGAACAACCGAAAGTGCTCAAGAGAGGGAATTGGAGTGGAAAGCTCTTATATTGCTCAAAGTGT
GTTACAATGCTTTGCTTGCTTACAAATGAGATGGGCTATCCCTAT
Right flanking sequence: Indices 23903 -- 24402
CTCAATGGACGGTGGAGATCAAGTGTTCTAGTATGTTCCATGATCCAACGGTGTACAATGAATCT
CTAGAAAAATCGACATATGTACAACCCTTTGTGCCTATCGAGGCAACGTCCTCGTTGCGTGCTCG
CGTAGGAACTCCGCAATCTTGTCCTCGAATTGCCACAATGAGTGCTCTCGTTCCCAACTAGCTTC
GCTTTCGGGAAGCCCCGACTATCGAATCAAAGAAGCGCGAGTTCTAGCTCGGGTGACTCCCACGT
CTCGGTATAGTACGCCTTGCTAGGATCTCCTCAATCTCCTTGTCGTAGGCGCTCGTTACTGTGGT
GGGAGCTCTTTTCGACTCCCTCCTATCCGCGTCTTCCTTGTCTCCATGGAAAGGCTTCAACAAGC
TTACGTGGAAGACATGTAACATAAGAAAAATGCTAAAACCAGAAACTGACGTTACCAGCTGTAGC
CTTAGTCGCTTAGCACCTGTTAACGGACCTCATCACCTTCTTGAC
Found at i:38102 original size:24 final size:25
Alignment explanation
Indices: 38055--38105 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
38045 GAGTGAAAGA
*
38055 AAGCTCGACCGTAAGGGAGAGGGTG
1 AAGCTCGACCGTAAAGGAGAGGGTG
*
38080 AAGCTCGACTG-AAAGGAGAGGGTG
1 AAGCTCGACCGTAAAGGAGAGGGTG
38104 AA
1 AA
38106 AAGCCGGCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.33, C:0.14, G:0.41, T:0.12
Consensus pattern (25 bp):
AAGCTCGACCGTAAAGGAGAGGGTG
Left flanking sequence: Indices 37555 -- 38054
TCGGATCTGATTGGAACAATGGAGAAGTAAGAAGACTTTGGCGGCGATTCATAATGGTTATCCTA
TAAGATCTATGTCCCAGGACAGAAAAGATGAATAATGAAACATGAGGAAGAGTATATCCTATAGT
GACCATAGCAGTTTCCCTAATCGACTACTTATCATCATAATGAACATTCCACTTAAAAACGAAAA
AAAAACGACTCGCCAGGCGGTTATCTTTTTTTCATATCTATATCCTATTTTGAAAAATGAAGACT
AAGACAGGAGTTTCGTGGAAAAGTCCTTTCTTTCTATTTATCGGATTTGAACCGATGATTTCAGC
CTCTTTCTTAGGAAATGCGCAACGGATTGAGCTGCGCGAAAGATTGACTAAAAAAGAGTTGGGTT
GAAGAGCTCGAGTGCAGCTCCGGCGACCGTAAGGGAGAGAGGCGCAGCTCCGGCGACCGTAAGGG
AGAGGGAGAAAGGGGGGCGTTAGCGGCTCGACCGGGAGTGAAAGA
Right flanking sequence: Indices 38106 -- 38605
AAGCCGGCTCTGGAACAGGCTCTTGCTCTAGCTCCGCCCAATGCTCGGAATGGTGAATTGATCAA
TTCCGAAACTAGCCAATCACGAACTGCTCGCTACTGGAACTGGCTAACAGAAAGAGCGGAAAGAA
AGAGGGCATGTCTCACTAGCAAGACAAAAAAGGTGAGCGCCTAGCGCGCCCCCTTTATTACTATT
ACTAGGTTGGGCAAGCTTTGGCTTCATTTTGATAGGAGTAAGTGCTTGCAGGATAAAAAAAAAGG
GCGACGAAATTCCCTTTGATCCTGATAACATGGCATGGCGAGTGGAGAAGCAAGCTGTAACGAAT
GAGAATCCGGTAGTCTATTCCGTATTCATTGATCCGGAACAACAGGTCATGATGCGAACATCTCT
CTACTATTACTACTTAATTAACAACAGGTCGAACTCAAGAAATATAGGGGAAAGTGAACGGGGGC
TAAAGTAGCAGTGGGCAGTGCAACAAAGCTACGGCTACTGAATAT
Found at i:45059 original size:24 final size:24
Alignment explanation
Indices: 45032--45079 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
45022 GCATTACTTC
45032 AAATAAGAAAAGGAGACGCTCTTT
1 AAATAAGAAAAGGAGACGCTCTTT
45056 AAATAAGAAAAGGAGACGCTCTTT
1 AAATAAGAAAAGGAGACGCTCTTT
45080 CTTAAGGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (24 bp):
AAATAAGAAAAGGAGACGCTCTTT
Left flanking sequence: Indices 44532 -- 45031
CTAGCACCACCGATACGGGCAACCGTAGAAAAGCGCCGCACAGAATATCAGTCGGCAATGGTCAT
TAGACCCTACGGGTGGTAGAAGTTCTTAAGTGCAGAAAGAGAGACAGGAGATAAATAAACTGTGC
CTCCCTTGACTCGGAACCTCTTAGCAAACTCAAAAGCGCCAGTGCTGGAAATCAGGGACTTACTA
TATGTGAAATAGTTACTCCAAGTCTCTCCAGCGCTTGCTCATATCGAGAAGCTATCACAACGTCA
TCCCGGGTAGTCAATGAAGCGGGAACCAGGGTAGACCTCTTCCGCGCAAATCCACACCAATAGAT
GGTCGGATAAGGCAAATAAAGGCCAGGAAGAGTAGTCTCCGAGAGGTTGCCCTGCAACAAAAGAT
AAAGTAGATGGTCTCTTCTTGACGAAGGGAACATCAAATATGTTACAGGCTAGTGTAGAATTTAC
TACACTAGAAGCAAATGACCTATCGAATAAAGACTGCATTACTTC
Right flanking sequence: Indices 45080 -- 45579
CTTAAGGAATGGATTGAGAATCCGGCTAAGGTGTGATGGAGGTTATGTGCTTTGAGGTCGGATGC
CGATTCCCCTATCGTGTTAGGCGCTAAGGATTCATTTCCTTTAGTTTTTCTATTACGAAAGCCAC
ATCAAGTCCAGACTTTCATTTCTTTCCTCACTAAATTCATCTTTTTTCTCTCCCTTCTTTCTTGC
TTTTCTTTGAGCGAAGTGGTGGCTCAGTCACTGGAGGATGTCCGAATGCACTTAAGGGTGGTCGC
TTTCCAAGGACCAATCCCAATCCTGAAAGTCAAGCTAAAGCTTTTTCATCGCTGTGAGCGAAGGG
ATTTCTTACTAAGCTAATTCAATCCTATCCCTATCACAGCTATCTGCTTCTATCTCTTCTCTTCT
TGCAACTAAATCAATAGCGTATATAAGATAAGGGAGGCAGTGGCTTTTAGCTGGAAATCAAGTGC
TGGCACCGTACGGTAGGGACTAGACTCTATATATACTATATCCCC
Found at i:51251 original size:21 final size:21
Alignment explanation
Indices: 51225--51290 Score: 132
Period size: 21 Copynumber: 3.1 Consensus size: 21
51215 AGTCCATCCT
51225 TTTGTTATATGTCTAATTTCA
1 TTTGTTATATGTCTAATTTCA
51246 TTTGTTATATGTCTAATTTCA
1 TTTGTTATATGTCTAATTTCA
51267 TTTGTTATATGTCTAATTTCA
1 TTTGTTATATGTCTAATTTCA
51288 TTT
1 TTT
51291 TCGAATTTGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.59
Consensus pattern (21 bp):
TTTGTTATATGTCTAATTTCA
Left flanking sequence: Indices 50725 -- 51224
GTCAACAAAGTAGCTGTAACGTGAACAGCGCTTTGTCCTTAATTTCTTTCTAAAGAGGCGGCAAC
TGCGCTGAATGATAATAAAGCCAAAAGTCCCATGCATCCTTTCTTTGGTCAACAACCAAGAACAT
TTTTCTATCGTTTTTCTTCAAGACTCTCTTTTGTTTTTTTAAAGAGAGCAGACCATCAAGAAAGA
ATCCAAATTTGATGACAAAGAATCCATCCAAATTTGATGACAAATCTGGTTTTCTCAATTCTTCT
GTATTGGCTCTATCTTCATTTCATAATTGATCTCTTTCATATAGTCCCATGTTGGGACTTGGCTA
TCGGGCATCAGCCCCTTGATTTCGATTTTCAATGTTATTTAATGAATGGGGAGGGAAATCTTCCA
GCTCTGGAACCTATGGAATCGTCGTCAAGTTCCGAGTCTTTGTCAACAGGTCCTAACCCATATGA
GATCTATCAACGCATTAAGATTCTTGAAGCCCTCGAGTCCATCCT
Right flanking sequence: Indices 51291 -- 51790
TCGAATTTGCGACCTTCTTCTATGAGATTTAGGTCTTCATTTATAAAAATCTCCAAGACCGAACG
CAATAAGACAGGGGTAAACTTCAGGATTCAGGACTCCGAAAGCCCGAGGACGACTATAATGAGGA
GGACGACAGACCCACTCACGATCTAATTCTAATAAAGGGCAAAGAATCGATTAGTAGTATGCCTG
TGCCAGAAGACCTTCTCACAGATGATTTCTAGTCAGTGTGCCGCGAGTGGCCTCTCGATGAATAA
GCTGCGATTGCTCTTGTTGATACAGTTTCATTTTTTTAGGCAGTTTCGTATTCTACCCGTCTTAC
CTGATGATTAGGATTTGCTTTCCCTTTCATTCAATTCTTCTTCCTTCCGGGGTAAGCACTTCCAA
AAGCGAGGGCATAAATGCAACTCTAAAGGCTGACGGGCTGGCCTAGTCTTTCTTATAAAGAGTTA
GAGCTTCAAGACTTACAGATTCTCAGTCTTTATCCCCAGGAGGGA
Found at i:61153 original size:18 final size:18
Alignment explanation
Indices: 61104--61160 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
61094 TCAACCAGAC
*
61104 AAACCTAAGCCAGAGGAG
1 AAACCTAAGCCAGATGAG
* * *
61122 AAAGCAAAGACAGATGAG
1 AAACCTAAGCCAGATGAG
*
61140 GAACCTAAGCCAGATGAG
1 AAACCTAAGCCAGATGAG
61158 AAA
1 AAA
61161 GAAAGTAAAA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.49, C:0.18, G:0.26, T:0.07
Consensus pattern (18 bp):
AAACCTAAGCCAGATGAG
Left flanking sequence: Indices 60604 -- 61103
TCTACAGGTGGCATCCGCGAGGATCTAGACATTATTTGATTGGAAATTGTTGTGCGTTTGAAGGC
CTCTTTGTCGCTGCCTGTGGGCCCCCCTCTAAAAGAAGTTGATCAAGCGCTTTCTCTTTACAAAG
ATGCTCAACGAATAGTTTTTCACTATTTAAGCTATCAATACGGTATGCTGGCGAGCTTTTGGAAT
GGGAATAGTAGTGGTTGTGCTTACGAGAATGTAAAGAAAGCTACAGTCATCCTTTAGGTAGGAAG
CCCTCAACGCTGGCTTAAGACCAGCTTTAGTAAGGCAAGAAGAATACAGATACAAGGATGAAGAC
TCCATCCACTACAGAGATAGAGACTAGTCTTACTGAAGACAGAACGCTATTAGATAAAGAAGAAG
AAGAAGAAGAACCAACAGAGCTTACTAACCCTACATTAGACGAGAAGAAAGACACTCGAAAAAGA
TGGACTATGACTTCTAGTAAGAGGACAATAGACCATCAACCAGAC
Right flanking sequence: Indices 61161 -- 61660
GAAAGTAAAAAGGAAGTGGAATCCCAACAGTGAACAGGCAGGCCGTTGATACCAATCCATTGTCT
GAGAGTCCCCAGGGGAAAGGTGGCGCAATCCGGCCACCACTCCAGAAGCTGAACTGTAGTACGGC
CCACATGCATGAACTCCTGAGACAAAGCTCGGCGAGCAAGATCCCTAGAAGGGAAAGCAATGAGG
AAGAAGTTGCCAGGCAACATCCTGATCCACTAATCCCAATTTGCATCCCAGTACAGACTGAGAGC
ATCCAAGACTTCCAACTATTCGACCATGTCACATAACGGTTCTGCTATCAGGGGGGACTCTCTTG
CACGAGAGATTAGTTGCTTACTACAGTACAGCGCGGGCAGGAAGGTTAGCTGCTTACTACTGGTT
GGAACGTAGGCAGGAGACAAGACAAGGGAACAAGGGATAGCTTATAATATCACTACTCCTAGAAA
AACGCTTTTAGGGTTGGCCTACTACTCCTAGAACGAGGGGATTAC
Found at i:73459 original size:22 final size:23
Alignment explanation
Indices: 73429--73474 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
73419 AAAAGATCAC
**
73429 AGCGCATTCTTTCAAAGAGAAGA
1 AGCGCATTCTAGCAAAGAGAAGA
73452 AGCG-ATTCTAGCAAAGAGAAGA
1 AGCGCATTCTAGCAAAGAGAAGA
73474 A
1 A
73475 AGTCTCAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.17
Consensus pattern (23 bp):
AGCGCATTCTAGCAAAGAGAAGA
Left flanking sequence: Indices 72929 -- 73428
TACTTAAGAGATTGCTTGAAAGGCGTTGGTTGAGTGACTGCACTTGCCCCTTTTACTGCTGGATT
GATTGACTTTGCCAGCTTCAAACCCTACTGTTCTAAGGATAAGGAAAGGAACTGAAAGGGGATGA
AAATATAGCTCATATTCTTCTCTTCCTTAGACCCACCATCTATCTGGTTAGCCCCCTCGGTGAAA
GAAAGGGAAAGAATGTTGAATATTAGCTCTTCCGGAGCACTCTCTTAGCTTAGCTATCTACTAGG
GAATCGCCATCGAAAGCCTACGATATTTGACTTCTCTCTTTTCCTTGAGATGCTTCCAGTGCGCT
TCAAGGGTTCTCGAGTCCGGGAAAGGGGAAGGACAGAGAGGATACCATCTAAGAAGGACAGGGAG
GAGACCGCCTCTAAGACGACTCTCCTGGATGAGAAAACTACCCGAGGGCTCGAAGTGAATGAAGA
ATGATTGAGATGATAGCATAGCTAGGATGAACTTGAAAAGATCAC
Right flanking sequence: Indices 73475 -- 73974
AGTCTCAAAGAAGCCATTCGTAAACCTACAACTGACTTACTACTATCTTCTTATAAGACAGACTG
GTAGACAGAAGGGAGGCTCTATTCAACCATTCTAAAAAAGACTGGCTACCATATAAGAAGAAAGA
AGAGACTGCCTACTGCTTTGAAAGCGGCTTGGAAGGAAGGGAAGGAAAGACTCCATAACCAAAAG
GCAAAGGCATTGGTCCTACCAAGTGTCCTACTAGGAATATAGGAAGAAAAGCTATTCTTCTTTGC
AATTTAATAAGTGCATTTAATCACCCCGAGAATACTAAGCAGACTTGAACTCCTCCCTTACCGCT
CAGATGATTCCCCGATCCGCTAAATCGTCGGATTGTCTTCTTAGAGTTAGAGTAGAGCTATGATG
CAGCAAGACTATTAGCCGATAGGAGAATAGTCTGATAGTCTCTTTTTGTCTGAATTCAGACCATT
TGAAAACTCATTTATCTCATACATACGCCTGTGGTGCCCAACCTT
Found at i:90722 original size:30 final size:30
Alignment explanation
Indices: 90682--90811 Score: 242
Period size: 30 Copynumber: 4.3 Consensus size: 30
90672 CGAGTGTAAC
*
90682 GAGAGGGGCGCAGCTCCGGCGACCGTAAGG
1 GAGAGAGGCGCAGCTCCGGCGACCGTAAGG
90712 GAGAGAGGCGCAGCTCCGGCGACCGTAAGG
1 GAGAGAGGCGCAGCTCCGGCGACCGTAAGG
90742 GAGAGAGGCGCAGCTCCGGCGACCGTAAGG
1 GAGAGAGGCGCAGCTCCGGCGACCGTAAGG
90772 GAGAGAGGCGCAGCTCCGGCGACCGTAAGG
1 GAGAGAGGCGCAGCTCCGGCGACCGTAAGG
*
90802 GAGAGGGGCG
1 GAGAGAGGCG
90812 GGCTCGACCG
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 98 1.00
ACGTcount: A:0.22, C:0.25, G:0.46, T:0.06
Consensus pattern (30 bp):
GAGAGAGGCGCAGCTCCGGCGACCGTAAGG
Left flanking sequence: Indices 90182 -- 90681
GGAGCAGAGACGGGGGAGGGGGAACCCCCAACGGGAGAACGAGAGACAGAGGCCATCTCGGAACA
CATTTGTACCGACCTAAAGTTTTCACCGGCGAGGCCCAACCTAGTAATAGTAATAAAGGAAGGCA
GCTATTAGTACAGCTTAGATAGCACTGTTCATAAACGCGAGTTTGAAGGAGTAAGGAGGTGCTGG
TCTCGGCTCTATCTGTCTCTCCTCTCCTCTGCTTGAACTGTGCCCGGAACCTGTCTTTTATCTCA
AGGTGGGTGGCGGAAAGAAAAGACTTTTCTGTGCTCCCCTAGTGTATGATCCGCTTGCCTTATTT
AAACAGGAAAGATAAGATTTCGTAGAGCGCTGGAACTTGACTTTAACCGCTTAAACGCTACCCGA
CAAGGAAAGCTTTATCAAAGTAGTCAAGAACCCTTTCCTTAAGCCGAAACCGCTTAACGAAAAAA
AAAGAAACATCTAACAAAGGGGCGCAGCGGTCGCTCGAGTGTAAC
Right flanking sequence: Indices 90812 -- 91311
GGCTCGACCGTAAGGTAGAGGGGCGGGCTCGACCGTAAGGGAGAGGAGGGGATTGCCAGGATCGC
TTGGTAAGCAAGCAAGCAGGCGCCAACTCCCAGTTCTTTCTCTTCTCTTCTTTCTTTTTAAGTCA
CGATCAGAAAGGTTGAAATCCGGATTGGATCTGGGAAGCGCTGGTTCGAATCCAGCTCGTGACAA
CCACAAAGCCTTTTTTCATTTAATCCCAATAATAGGCGAGGCCCCTTTCGTTTTCTCGTTAGGCG
GATGACTGCTCCATTTCTGATAAAGAGGGATAGGATCCTATTTTCTAACTAAGGGCAGCTGAACT
TCTTTGTCTATTTATCTAGAACCCCTATCTCTTTTTACTTTACTGCGCCCGAGAAAGAAATGTGA
GGCCGATCGATGATCACATACCTAACCACTCACCATTTTGATGTAGATGTTCAGTGCAAGGGCAG
ACCGCTGCTGGTAGCCCAACCTAGTAATAAATAAAGGGTGGCGCG
Found at i:90821 original size:25 final size:25
Alignment explanation
Indices: 90791--90857 Score: 125
Period size: 25 Copynumber: 2.7 Consensus size: 25
90781 GCAGCTCCGG
90791 CGACCGTAAGGGAGAGGGGCGGGCT
1 CGACCGTAAGGGAGAGGGGCGGGCT
*
90816 CGACCGTAAGGTAGAGGGGCGGGCT
1 CGACCGTAAGGGAGAGGGGCGGGCT
90841 CGACCGTAAGGGAGAGG
1 CGACCGTAAGGGAGAGG
90858 AGGGGATTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.49, T:0.09
Consensus pattern (25 bp):
CGACCGTAAGGGAGAGGGGCGGGCT
Left flanking sequence: Indices 90291 -- 90790
TAATAGTAATAAAGGAAGGCAGCTATTAGTACAGCTTAGATAGCACTGTTCATAAACGCGAGTTT
GAAGGAGTAAGGAGGTGCTGGTCTCGGCTCTATCTGTCTCTCCTCTCCTCTGCTTGAACTGTGCC
CGGAACCTGTCTTTTATCTCAAGGTGGGTGGCGGAAAGAAAAGACTTTTCTGTGCTCCCCTAGTG
TATGATCCGCTTGCCTTATTTAAACAGGAAAGATAAGATTTCGTAGAGCGCTGGAACTTGACTTT
AACCGCTTAAACGCTACCCGACAAGGAAAGCTTTATCAAAGTAGTCAAGAACCCTTTCCTTAAGC
CGAAACCGCTTAACGAAAAAAAAAGAAACATCTAACAAAGGGGCGCAGCGGTCGCTCGAGTGTAA
CGAGAGGGGCGCAGCTCCGGCGACCGTAAGGGAGAGAGGCGCAGCTCCGGCGACCGTAAGGGAGA
GAGGCGCAGCTCCGGCGACCGTAAGGGAGAGAGGCGCAGCTCCGG
Right flanking sequence: Indices 90858 -- 91357
AGGGGATTGCCAGGATCGCTTGGTAAGCAAGCAAGCAGGCGCCAACTCCCAGTTCTTTCTCTTCT
CTTCTTTCTTTTTAAGTCACGATCAGAAAGGTTGAAATCCGGATTGGATCTGGGAAGCGCTGGTT
CGAATCCAGCTCGTGACAACCACAAAGCCTTTTTTCATTTAATCCCAATAATAGGCGAGGCCCCT
TTCGTTTTCTCGTTAGGCGGATGACTGCTCCATTTCTGATAAAGAGGGATAGGATCCTATTTTCT
AACTAAGGGCAGCTGAACTTCTTTGTCTATTTATCTAGAACCCCTATCTCTTTTTACTTTACTGC
GCCCGAGAAAGAAATGTGAGGCCGATCGATGATCACATACCTAACCACTCACCATTTTGATGTAG
ATGTTCAGTGCAAGGGCAGACCGCTGCTGGTAGCCCAACCTAGTAATAAATAAAGGGTGGCGCGC
TATAGATCGGATCCTAAGTAGCTATAGAATGAACCCTGGAAGAGG
Found at i:94787 original size:18 final size:18
Alignment explanation
Indices: 94764--94799 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
94754 CACTACTACA
94764 AATAGTACTACACCCTTG
1 AATAGTACTACACCCTTG
94782 AATAGTACTACACCCTTG
1 AATAGTACTACACCCTTG
94800 GTCGTGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (18 bp):
AATAGTACTACACCCTTG
Left flanking sequence: Indices 94264 -- 94763
TGGGATGGTCCACTTGATGAGTATCCCCTGAATTGTTGTATAAAATTGTAGAAGGTCTGACTCCC
TACCGTTGAATGCGTGTGGTCAACTGTGTAATCGAGGAAGCCAACATTGACTGACTTTCATGGTT
AAGATTCGAAAGAAGAAGAACCAACAAGATAGGATGTTTTCCCCTCTTCTCTAACTAACAGGAGA
AGCGGCTCTATTGAATTTGAATAGAGCTTTTCATCCTTGTTTGATCATCCTATCAGTCATGGTAA
CGGATTGAGTCTCTCTCTTTCGGATCCAGGAAACTGCTCTCCGAGATCTTTTTTCCTTTTGGAAG
ATAAAGGAGTGAAACAATCAACCTATTGATATTGGAAGACACAAAGGATTCTTCCAATGTATCAT
TTCTGGGTCCAATGGAATTCATAGGTATAGGAAGAAGCCCTGTCAAATAGAGATTTTTTCTTTCG
ACCATCTTTCGATTGTTGATACGGTATAGAAGGACCACTACTACA
Right flanking sequence: Indices 94800 -- 95299
GTCGTGAAATCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGAGTCCAAGAGTTTTAC
AAAACGTTCTTGATGGAAAAAAATGTTAATGAAAGATCCCACTGAATTGAATTTGGTCCATGAAT
CTATTAAATAGTGAGAATTCTTGATCTCTCTCAATTCGAAAATCCAGAATCGAAATAAGTTTTCT
CTCTCTTTAAATAAGTTTTCTCTCCCTTTCATATAATATATAGCTCCTATAAATTGGATTGATTC
AAACAGAACTAAAGATTTCATTTCCATTTCGACTTTGTTTATCTACGATATATGAGGATCCCCGC
TAAGCGTCCATGGCTGAATGGTTAAAGCACCCAACTCATAATTGGCGAATTCGTAGGTTCAATTC
CTACTGGATGCACACCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAA
TCTCATCATCCATACATAACGAATTGGTGTGGTATATTCATATCA
Found at i:95032 original size:25 final size:21
Alignment explanation
Indices: 94982--95023 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
94972 TCCAGAATCG
*
94982 AAATAAGTTTTCTCTCTCTTT
1 AAATAAGTTTTCTCTCCCTTT
95003 AAATAAGTTTTCTCTCCCTTT
1 AAATAAGTTTTCTCTCCCTTT
95024 CATATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.05, T:0.50
Consensus pattern (21 bp):
AAATAAGTTTTCTCTCCCTTT
Left flanking sequence: Indices 94482 -- 94981
GAGCTTTTCATCCTTGTTTGATCATCCTATCAGTCATGGTAACGGATTGAGTCTCTCTCTTTCGG
ATCCAGGAAACTGCTCTCCGAGATCTTTTTTCCTTTTGGAAGATAAAGGAGTGAAACAATCAACC
TATTGATATTGGAAGACACAAAGGATTCTTCCAATGTATCATTTCTGGGTCCAATGGAATTCATA
GGTATAGGAAGAAGCCCTGTCAAATAGAGATTTTTTCTTTCGACCATCTTTCGATTGTTGATACG
GTATAGAAGGACCACTACTACAAATAGTACTACACCCTTGAATAGTACTACACCCTTGGTCGTGA
AATCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGAGTCCAAGAGTTTTACAAAACGT
TCTTGATGGAAAAAAATGTTAATGAAAGATCCCACTGAATTGAATTTGGTCCATGAATCTATTAA
ATAGTGAGAATTCTTGATCTCTCTCAATTCGAAAATCCAGAATCG
Right flanking sequence: Indices 95024 -- 95523
CATATAATATATAGCTCCTATAAATTGGATTGATTCAAACAGAACTAAAGATTTCATTTCCATTT
CGACTTTGTTTATCTACGATATATGAGGATCCCCGCTAAGCGTCCATGGCTGAATGGTTAAAGCA
CCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCACACCAATGGGACCCTCC
AATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCCATACATAACGAATTGGTG
TGGTATATTCATATCATAACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCAT
AGGGAAGAAAATCGATTTATGGATGGAATCCAATATGCAGTATTTACAGACAAAAGTATTCGGTT
ATTGGGGAAAAATCAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATT
GGGTCGAACTCTTCTTTGGTGTCAAGGTAATGGCTATGAATAGCC
Found at i:121684 original size:31 final size:31
Alignment explanation
Indices: 121618--121698 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 31
121608 TATGAAGTTG
* * *
121618 CTCGACTGAAAGGAGAGGGGCGCAGCTCCGG
1 CTCGACCGAAAGGAGAGGGGCGCAGCGCCGA
**
121649 CTCGACCG-AAGGATGAGGGGCGCAGCGGTGA
1 CTCGACCGAAAGGA-GAGGGGCGCAGCGCCGA
*
121680 CTCGACCGTAAGGGAGAGG
1 CTCGACCG-AAAGGAGAGG
121699 AGGGGAGCTC
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
30 5 0.12
31 28 0.68
32 4 0.10
33 4 0.10
ACGTcount: A:0.23, C:0.23, G:0.43, T:0.10
Consensus pattern (31 bp):
CTCGACCGAAAGGAGAGGGGCGCAGCGCCGA
Left flanking sequence: Indices 121118 -- 121617
TATAGGGCGGGCTTTCAAGACAGAGATGCACTACTCTATCTGCTTTTAATTGATAGGGGGGCTTT
CCTAGAAGGAAGTCAAAAAATCAATAGAAAAAATCCCTTCCCGGCCCGACGGGACTCTACGTCTG
GGTCTTATTCCATCTCAAACTCGGATTAGGAAGAGTGCCCTTGAACTACAGATCAATCATAATAA
ACAATACAAGAAAAGAAATGGATTCTCCTGCCGGCGAGGCGAGAAAAGGGGAGATAGGGAAGAAG
AGATTAAGGATAGATATTCACTCCACTCCATAGATAGTGAACACAGATTTTGGTTTCATTTTTCC
ATTTTATGAAATTCAAAAAAGGGTCAAAAAGGCGGACATTGTTTTGACTCTAAAAGTGGGGCTGT
GCCCATTCCATTCTCCCTCTTCTTCCGCTTTACAACGGGAATAAGGAACCTTAGAATTCACCCTA
CCTATCCATGAAAAAATGGGATTTTATAGGAGTGGTATGAAGTTG
Right flanking sequence: Indices 121699 -- 122198
AGGGGAGCTCCTATATCCTATAAAATAGCAGAAAGATTTGGATGGAATGTCCTACTCCTGCCTGA
GCTTTCCGATCAACTAATCCCCTATTTCAAGGGCATCTCTGTGTTAGGTAGGGCCAGGGATCTCT
GATTAGTCGAATGAGCCCATCCCTCTGGCCTATCATTTATTGGTCGATCCGGCTGGCGGCTCCTG
CATCTCCTGCGTTGCGTCTCCATGGGGGCCCTTCATACAAGTTTGCTGCTAGGAGCCCCTCTAGT
CGAATCAATAATCAATAGAAGTCCCAATAGAAGTTGACTGACCCGGCTCGTCAATTTGAGCAGCC
GGGATATTGAACAACGAACATTTGATTGAATTCCTTGCCAAACCCTGGGATGAGAGGGAAGGTCG
ATTTGACTCGAATCCTGGACCTGATCTTGAATCCTACACCGGTTAATGAGGCGATGGGAGAAGTT
TTTCTTTTTTCATTTTTTCATCAATGCTGGCCCAGTCGAGGCTCG
Found at i:131878 original size:15 final size:15
Alignment explanation
Indices: 131858--131887 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
131848 AGTCTATTAT
131858 ATAGCTAGATTATAG
1 ATAGCTAGATTATAG
131873 ATAGCTAGATTATAG
1 ATAGCTAGATTATAG
131888 CCTATTACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (15 bp):
ATAGCTAGATTATAG
Left flanking sequence: Indices 131358 -- 131857
AGAGGTAAAAAGTCAATAAGTGAAAGACTGACTCTCTTTTACCCGTTTGAGTATACTACTATTGA
AAAAAACTTCGCCGGCGAAGCCTTTATCTTATAGAGGGTGGGCGGTTTACTGAGACTCCATCTAA
CAAGATCCCATTGGGCAGTTTAAAGACCTTGAGAAACAACTAATACTAGAATAGAATCTGCTAGA
ATAACTCCAAGGGCCAAGAAAGATAGTTCTTTATGAGTTCTATTTGAACTAAGCCGAATCGCTAT
CTCTGAAACGTCGTACTCTCTTTATCTGAGGATTTTGTATGCAGCATCTAGATGTATCGTTCTTG
GCTTCTGCATGAATTGACTCACGACTCCAACAACATAGGCAATGTCGGCTCGATCATCTTTATAT
TGGCAGGAGGAGGTACAGCACGAGTGGGTAGGGGATTGGTAGTTACATTGGGACGGTTTGCCCGG
CTATTACTATTATTAGAGTCAGTAACTATTAGAATAGTCTATTAT
Right flanking sequence: Indices 131888 -- 132387
CCTATTACCATGATCTTCTACTTCTCGCTTTGTCCCCACCAGATAAGGAAATGCCTCTCTTAGAA
TATCTGGAGCTCTACCAGGGAATCTTATCGTTAGGCCTGGAAAGAGTCTTCACTATGGAAGGGCA
GTGGCTTGACCCGAGGAGATGAAGGTGACTCTTGTTCAAGTGAATACAACCTATTCTTTGTGACT
GCTCTGCAGGCTTGACTTCTTCAGCTGGCTTGCCTTCCATAGTCTAAAAGACTTGCTCCTTCCTA
AGCGTGAAAAAGAAAGGAAAGAAGAAAAGGCGAGGGACTAACCAATCTAAGGAACTCCCGAGATT
GAGAGATTCATAGGGAAGGATGCCAAAGAAGGGCTAAGCACGAAAAAGGATAGAAGTTAAGAAGC
TGAAAGAGAAGCCTAATTTCCTTTTTTCACTAGAGTATGGACCCAAGTTCATCAGAGGACTCATC
TGACTTTGAAGTGAAGGCCAAGGCCGGTTCACGGTAATGAATGGT
Found at i:160727 original size:33 final size:33
Alignment explanation
Indices: 160689--160755 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
160679 CGTAAGGGGT
* *
160689 GGGGCGGTAACTCGACCGTA-AGGGAGTGGAGGG
1 GGGGCGGTAACTCGACC-TACAGCGAGAGGAGGG
*
160722 GGGGCGGTCACTCGACCTACAGCGAGAGGAGGG
1 GGGGCGGTAACTCGACCTACAGCGAGAGGAGGG
160755 G
1 G
160756 AGAGCTTGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 28 0.93
ACGTcount: A:0.21, C:0.19, G:0.49, T:0.10
Consensus pattern (33 bp):
GGGGCGGTAACTCGACCTACAGCGAGAGGAGGG
Left flanking sequence: Indices 160189 -- 160688
ATTATCTTATGATGACCTGGTCGAGGGAGTACGATACATCGGTGTAAAAGATTGAGTTGGATCTA
TGAGCTTACTTAGACTAAGAAATGGAAACTTTCCCTAAGTACGAGAATGGATTCGAATCCAATCT
GAAGTGTTTATTGTATGCCGCGATAATGATCATATTAATTTAAATGAAATTACAGTGCTATTAAA
TAAACTCAACCTTATTGGATTTATTCAGACAACTGGGCTAAATAATAATCATCCTATTCAATGTG
AAGGTGGATGTACTGTTTTTGTTAACTCTGATAGAAAGATAGATATATGGGATCCTTAAAGATAT
GGGATCCTAATGAGTATTAGTTACATGCTGCTCTTTGAAAGATAGATTCACACTACAAGCAAATA
GCGCCGCAAGATGATAAATGATGATAATTGGGGCATATCAATTAGAAATAGATCTTTCTTTTGGC
TTATTCTAATTGGGATAGCCTTAGAGTATCCTCTCCGTAAGGGGT
Right flanking sequence: Indices 160756 -- 161255
AGAGCTTGGTAAGCAAGCAAGCAGGCGCCAACTCCCAGTTCTTTCTCTTCTCTTCTTTCTTTTTA
AGTCACGATCAGAAAGGTTGAAATCCGGATTGGATCTGGGAAGCGCTGGTTCGAATCCAGCTCGT
GACAAGACCTATTGTTTTCAAGTCGATGATGTATTTCGTTATCAAAAAAGCGTGAGAGTGTTAAC
ACGAGATGGTAGGTGGGGGGCAGGAAGTTCAGTTACAGAAATGGTTGTCGTGGACTGGTACCGCT
GTACTGCCTACTATAGGTTCACCTTCCTTATTGTGATCTCTCACTCGGGGGCTAAGATAGTCTCT
TAAGTGCTAGCGTAGCGGGAGAGCTAATAGCCTGAAAAACCTTATATACAGTATAAGTTCCCTCC
CCCCACCAAGAATGAAAGACTCCCTTCATGAGTGAGGATAAAGAGAGCGATAGGCAGATTGCCTC
AGAGCTGGCAGGGAAGACTTTGTGCTTGGAATATGAAAGCTATGA
Found at i:166630 original size:26 final size:26
Alignment explanation
Indices: 166601--166650 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
166591 CCCCACACTA
*
166601 ATCAGCTCTTCATCCTATCTATTTCC
1 ATCAGCTCTTCATCCAATCTATTTCC
166627 ATCAGCTCTTCATCCAATCTATTT
1 ATCAGCTCTTCATCCAATCTATTT
166651 ACTGTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.32, G:0.04, T:0.42
Consensus pattern (26 bp):
ATCAGCTCTTCATCCAATCTATTTCC
Left flanking sequence: Indices 166101 -- 166600
GTTAGCAGGGCTGGCTGCTGGTCTGAATGTGGTCTTACGAGCCTTCTCCCAGTCCTTTCCTTACT
CTGTCGATGGTATGCCTGAGAGGGCGGTCTTTCTCCTTGGCTTGTACTCGAATAGCCTTTTTGTT
CGAAATCGAGAACTTCCTATTGCCTTTGATAAAAGGGAAGGATGGAATTCCGTCTGTTGTCACAA
GAATAGTTCAAGTTGAATGCGAATAATCGATTGAATCCGATCTTTGAAGACTTGAAGGAATAGTG
TCCTAACCCGGCCGATGTAGAGTTCTACCTTTTGGCAGTACTACCTCGTAGGGACTACCAAGCGC
ACTTCGCAGCATTTCTTTCTTGTCATTCTCGGATACAAAAGCAAAGACTTAAGACCACGCTGGCT
CTGCTGCGAAAGGCAATGATGCGTGCCGCACTCATGAGGGACAGCCTATGTTCTTTCAATCCCAA
GCCACTCAATCATTCTTCTTTTAGTGTGCCTTCTTCCCCACACTA
Right flanking sequence: Indices 166651 -- 167150
ACTGTTTTATGGCTACCAGAATAGGCCTTCTTTGCATCCAGATAGGCCTTCTTTGCATGGTGTAT
ACTGGTATAGCGGAAGTTACTGACTGAACCAGCAATCTTCTACTGACTGAACCAGCAATCTTCTT
CCATCCATTGGGAACAGCGCAGCCTGCCATCCATCCAACCTATCTTTCACTTTGAGTATGTGGTT
GTATGTGGTTTTAGAGACCGTCTTCCATATGAAGGTACCCATTCTTTGTACTTCTATATGAGGGA
ACTCCTTTGTACTTACCATGGTCTGCTGTGAGAGGCAATTTGACATATAGCACCAATCTCCCGAG
CAGTAAGCATGTGGAAGTGGTGTGAATGAGCCTGGATAAAGGATGAATTTGCCTTAAAAGCTGCT
TGACTTATGGTAAATGGAAGTTGGCTGTCTACATATCATTCCTTAGCTTAATTAGGCTGTGTGTC
CAGCCAAGATCCCTTTTGATCATTTGTCATACATCCGTGTATACA
Found at i:166696 original size:21 final size:22
Alignment explanation
Indices: 166666--166708 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
166656 TTTATGGCTA
166666 CCAGAATAGGCCTTCTTTGCAT
1 CCAGAATAGGCCTTCTTTGCAT
166688 CCAG-ATAGGCCTTCTTTGCAT
1 CCAGAATAGGCCTTCTTTGCAT
166709 GGTGTATACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.33
Consensus pattern (22 bp):
CCAGAATAGGCCTTCTTTGCAT
Left flanking sequence: Indices 166166 -- 166665
CTGTCGATGGTATGCCTGAGAGGGCGGTCTTTCTCCTTGGCTTGTACTCGAATAGCCTTTTTGTT
CGAAATCGAGAACTTCCTATTGCCTTTGATAAAAGGGAAGGATGGAATTCCGTCTGTTGTCACAA
GAATAGTTCAAGTTGAATGCGAATAATCGATTGAATCCGATCTTTGAAGACTTGAAGGAATAGTG
TCCTAACCCGGCCGATGTAGAGTTCTACCTTTTGGCAGTACTACCTCGTAGGGACTACCAAGCGC
ACTTCGCAGCATTTCTTTCTTGTCATTCTCGGATACAAAAGCAAAGACTTAAGACCACGCTGGCT
CTGCTGCGAAAGGCAATGATGCGTGCCGCACTCATGAGGGACAGCCTATGTTCTTTCAATCCCAA
GCCACTCAATCATTCTTCTTTTAGTGTGCCTTCTTCCCCACACTAATCAGCTCTTCATCCTATCT
ATTTCCATCAGCTCTTCATCCAATCTATTTACTGTTTTATGGCTA
Right flanking sequence: Indices 166709 -- 167208
GGTGTATACTGGTATAGCGGAAGTTACTGACTGAACCAGCAATCTTCTACTGACTGAACCAGCAA
TCTTCTTCCATCCATTGGGAACAGCGCAGCCTGCCATCCATCCAACCTATCTTTCACTTTGAGTA
TGTGGTTGTATGTGGTTTTAGAGACCGTCTTCCATATGAAGGTACCCATTCTTTGTACTTCTATA
TGAGGGAACTCCTTTGTACTTACCATGGTCTGCTGTGAGAGGCAATTTGACATATAGCACCAATC
TCCCGAGCAGTAAGCATGTGGAAGTGGTGTGAATGAGCCTGGATAAAGGATGAATTTGCCTTAAA
AGCTGCTTGACTTATGGTAAATGGAAGTTGGCTGTCTACATATCATTCCTTAGCTTAATTAGGCT
GTGTGTCCAGCCAAGATCCCTTTTGATCATTTGTCATACATCCGTGTATACACCAAAGTGTGAAA
CGGATTCCATAAGAGCAATAGATAGAATTATTGTTGCAACCATTA
Found at i:166759 original size:23 final size:23
Alignment explanation
Indices: 166733--166779 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
166723 TAGCGGAAGT
166733 TACTGACTGAACCAGCAATCTTC
1 TACTGACTGAACCAGCAATCTTC
166756 TACTGACTGAACCAGCAATCTTC
1 TACTGACTGAACCAGCAATCTTC
166779 T
1 T
166780 TCCATCCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (23 bp):
TACTGACTGAACCAGCAATCTTC
Left flanking sequence: Indices 166233 -- 166732
AAATCGAGAACTTCCTATTGCCTTTGATAAAAGGGAAGGATGGAATTCCGTCTGTTGTCACAAGA
ATAGTTCAAGTTGAATGCGAATAATCGATTGAATCCGATCTTTGAAGACTTGAAGGAATAGTGTC
CTAACCCGGCCGATGTAGAGTTCTACCTTTTGGCAGTACTACCTCGTAGGGACTACCAAGCGCAC
TTCGCAGCATTTCTTTCTTGTCATTCTCGGATACAAAAGCAAAGACTTAAGACCACGCTGGCTCT
GCTGCGAAAGGCAATGATGCGTGCCGCACTCATGAGGGACAGCCTATGTTCTTTCAATCCCAAGC
CACTCAATCATTCTTCTTTTAGTGTGCCTTCTTCCCCACACTAATCAGCTCTTCATCCTATCTAT
TTCCATCAGCTCTTCATCCAATCTATTTACTGTTTTATGGCTACCAGAATAGGCCTTCTTTGCAT
CCAGATAGGCCTTCTTTGCATGGTGTATACTGGTATAGCGGAAGT
Right flanking sequence: Indices 166780 -- 167279
TCCATCCATTGGGAACAGCGCAGCCTGCCATCCATCCAACCTATCTTTCACTTTGAGTATGTGGT
TGTATGTGGTTTTAGAGACCGTCTTCCATATGAAGGTACCCATTCTTTGTACTTCTATATGAGGG
AACTCCTTTGTACTTACCATGGTCTGCTGTGAGAGGCAATTTGACATATAGCACCAATCTCCCGA
GCAGTAAGCATGTGGAAGTGGTGTGAATGAGCCTGGATAAAGGATGAATTTGCCTTAAAAGCTGC
TTGACTTATGGTAAATGGAAGTTGGCTGTCTACATATCATTCCTTAGCTTAATTAGGCTGTGTGT
CCAGCCAAGATCCCTTTTGATCATTTGTCATACATCCGTGTATACACCAAAGTGTGAAACGGATT
CCATAAGAGCAATAGATAGAATTATTGTTGCAACCATTATAGTCACTGTTTTCATCTTTCCTATT
TCTTTATTATCTATTTGGAGTGGATCAAAGGATGTTTGTGGAAAC
Found at i:167583 original size:21 final size:21
Alignment explanation
Indices: 167557--167597 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
167547 CTTTTGATTT
167557 TACTACTTAGAGCGTCTAAAC
1 TACTACTTAGAGCGTCTAAAC
* *
167578 TACTACTTGGAGTGTCTAAA
1 TACTACTTAGAGCGTCTAAA
167598 ACAACACCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (21 bp):
TACTACTTAGAGCGTCTAAAC
Left flanking sequence: Indices 167057 -- 167556
GAAGTTGGCTGTCTACATATCATTCCTTAGCTTAATTAGGCTGTGTGTCCAGCCAAGATCCCTTT
TGATCATTTGTCATACATCCGTGTATACACCAAAGTGTGAAACGGATTCCATAAGAGCAATAGAT
AGAATTATTGTTGCAACCATTATAGTCACTGTTTTCATCTTTCCTATTTCTTTATTATCTATTTG
GAGTGGATCAAAGGATGTTTGTGGAAACAAATCCCTTACAACTTTATTGATAGGCTCCCCGCAAT
CGCATGGGCTATGAACATTTGGATGGCTACAACAAATATGTTTAACATAAGCATCTTCGATTGTC
TTTATAAAGTCTTTGAGATGGGGTGTACACAGTGCCCCAGGTTGATTTAATAGTTGGTCAGGGGC
TAGGCTGATCCATATTGCAAATCCCATTATGATTAAAAGAAATAGATGAAAGCGAAGATCATAGA
AAAAGGAGTATTTTATAGCATATGGGAGTGATACGCTTTTGATTT
Right flanking sequence: Indices 167598 -- 168097
ACAACACCAAGCCCAACATTCTGTTTCATTGACTGCAGAAGGGGTATCTTATTTTCAAAAAAACT
ATTTAATATTCTGTAATTATCAGGCAGATAGGGATGCCCTGTTATAAGACTTTTAATTGAAGTCA
AAGGTATCCAAGGTGCTAAAGTATATTTAAGAACACTTCCATCTTGAAAAATATATTTAAAATTC
TTACTCCTCGAATAATTAAAAATAGACTTCATATTATTTCGATATGTTGGATTAAGATAATCAAG
ATTATATTTACGTCGTATTGATGCTTTTCTACCATTCACATAATACCATATTTGTTCTTTTATAG
GCATTTGTTGCTCTCTTAAATGCATTATATCTCTTAATCTCTGTTTCTCACTTAAATTCACAGCA
GAAGATGAGGAAGATGTGGAATCAATATTATTGGATGAGGAATCGATATTCTTGCTAGTTGTATT
ACTAGAACTTGGAATTGTATAACTAGAACTTGGATTTCTGTAGCT
Found at i:168070 original size:21 final size:21
Alignment explanation
Indices: 168046--168211 Score: 142
Period size: 21 Copynumber: 7.9 Consensus size: 21
168036 TTCTTGCTAG
168046 TTGTATTACTAGAACTTGGAA
1 TTGTATTACTAGAACTTGGAA
*
168067 TTGTATAACTAGAACTTGG-A
1 TTGTATTACTAGAACTTGGAA
* * * *
168087 TT-TCTGTAGCTAGAAATAGGAT
1 TTGTAT-TA-CTAGAACTTGGAA
* *
168109 TTGTATAACTAGAACTTGGAT
1 TTGTATTACTAGAACTTGGAA
*
168130 TTGTATTACTAGTACTTGG-A
1 TTGTATTACTAGAACTTGGAA
* * * *
168150 TT-TCTGTAGCTAGAAATAGGAT
1 TTGTAT-TA-CTAGAACTTGGAA
168172 TTGTATTACTAGAACTTGGAA
1 TTGTATTACTAGAACTTGGAA
* *
168193 TTGTGTTGCTAGAACTTGG
1 TTGTATTACTAGAACTTGG
168212 TTCATCATAT
Statistics
Matches: 113, Mismatches: 24, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
19 4 0.04
20 8 0.07
21 90 0.80
22 7 0.06
23 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (21 bp):
TTGTATTACTAGAACTTGGAA
Left flanking sequence: Indices 167546 -- 168045
GCTTTTGATTTTACTACTTAGAGCGTCTAAACTACTACTTGGAGTGTCTAAAACAACACCAAGCC
CAACATTCTGTTTCATTGACTGCAGAAGGGGTATCTTATTTTCAAAAAAACTATTTAATATTCTG
TAATTATCAGGCAGATAGGGATGCCCTGTTATAAGACTTTTAATTGAAGTCAAAGGTATCCAAGG
TGCTAAAGTATATTTAAGAACACTTCCATCTTGAAAAATATATTTAAAATTCTTACTCCTCGAAT
AATTAAAAATAGACTTCATATTATTTCGATATGTTGGATTAAGATAATCAAGATTATATTTACGT
CGTATTGATGCTTTTCTACCATTCACATAATACCATATTTGTTCTTTTATAGGCATTTGTTGCTC
TCTTAAATGCATTATATCTCTTAATCTCTGTTTCTCACTTAAATTCACAGCAGAAGATGAGGAAG
ATGTGGAATCAATATTATTGGATGAGGAATCGATATTCTTGCTAG
Right flanking sequence: Indices 168212 -- 168711
TTCATCATATTGTTTGGTTCGTATCTCTGGTTTTTGTGATGTTAATTTCCAAAAAAGGGAGAATG
GAAAGCCTGAACTCATACAACGTGATTGAACCATCGGATACATTTGGTATGGGCCAAGCATCTGA
ACATTACAGAAATTGTCATAAGAATATCTCATCAAAGGATATGGTACATGATTCTTGCGTGAAAT
ACAAAAGGATGTACTTTTATGTAAAGATGAGGATACTGACACATTTATTGTGAATCTTGTACGGA
AAAAAGTCATATTTCGATTTTCTCTTTTTTAGCAGTTCAAAAGCAGGATTTTTATCTGCCTATGC
TAACTTTCACTCTATTTTTGTTCCCTTGCTGGTATGCTTGGCTTACTTGGATTGGGGTTATGGCG
TTGTTGCCATGGAAGCTTCTTTCAATCAAGATTGCATTCCCTTCCTTTGATTGAGAGAATAAAGA
ATGAAACTGGTTTCAGTGAAAGAAATGAAAGCAAGGGGAAAGATT
Found at i:168101 original size:42 final size:42
Alignment explanation
Indices: 168046--168211 Score: 181
Period size: 42 Copynumber: 4.0 Consensus size: 42
168036 TTCTTGCTAG
168046 TTGTATTACTAGAACTTGGAATTGTATAACTAGAACTTGGAT
1 TTGTATTACTAGAACTTGGAATTGTATAACTAGAACTTGGAT
* * * * *
168088 TTCT-GTAGCTAGAAATAGGATTTGTATAACTAGAACTTGGAT
1 TTGTATTA-CTAGAACTTGGAATTGTATAACTAGAACTTGGAT
* * * * * * *
168130 TTGTATTACTAGTACTTGGATTTCTGTAGCTAGAAATAGGAT
1 TTGTATTACTAGAACTTGGAATTGTATAACTAGAACTTGGAT
* **
168172 TTGTATTACTAGAACTTGGAATTGTGTTGCTAGAACTTGG
1 TTGTATTACTAGAACTTGGAATTGTATAACTAGAACTTGG
168212 TTCATCATAT
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 2 0.02
42 97 0.96
43 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (42 bp):
TTGTATTACTAGAACTTGGAATTGTATAACTAGAACTTGGAT
Left flanking sequence: Indices 167546 -- 168045
GCTTTTGATTTTACTACTTAGAGCGTCTAAACTACTACTTGGAGTGTCTAAAACAACACCAAGCC
CAACATTCTGTTTCATTGACTGCAGAAGGGGTATCTTATTTTCAAAAAAACTATTTAATATTCTG
TAATTATCAGGCAGATAGGGATGCCCTGTTATAAGACTTTTAATTGAAGTCAAAGGTATCCAAGG
TGCTAAAGTATATTTAAGAACACTTCCATCTTGAAAAATATATTTAAAATTCTTACTCCTCGAAT
AATTAAAAATAGACTTCATATTATTTCGATATGTTGGATTAAGATAATCAAGATTATATTTACGT
CGTATTGATGCTTTTCTACCATTCACATAATACCATATTTGTTCTTTTATAGGCATTTGTTGCTC
TCTTAAATGCATTATATCTCTTAATCTCTGTTTCTCACTTAAATTCACAGCAGAAGATGAGGAAG
ATGTGGAATCAATATTATTGGATGAGGAATCGATATTCTTGCTAG
Right flanking sequence: Indices 168212 -- 168711
TTCATCATATTGTTTGGTTCGTATCTCTGGTTTTTGTGATGTTAATTTCCAAAAAAGGGAGAATG
GAAAGCCTGAACTCATACAACGTGATTGAACCATCGGATACATTTGGTATGGGCCAAGCATCTGA
ACATTACAGAAATTGTCATAAGAATATCTCATCAAAGGATATGGTACATGATTCTTGCGTGAAAT
ACAAAAGGATGTACTTTTATGTAAAGATGAGGATACTGACACATTTATTGTGAATCTTGTACGGA
AAAAAGTCATATTTCGATTTTCTCTTTTTTAGCAGTTCAAAAGCAGGATTTTTATCTGCCTATGC
TAACTTTCACTCTATTTTTGTTCCCTTGCTGGTATGCTTGGCTTACTTGGATTGGGGTTATGGCG
TTGTTGCCATGGAAGCTTCTTTCAATCAAGATTGCATTCCCTTCCTTTGATTGAGAGAATAAAGA
ATGAAACTGGTTTCAGTGAAAGAAATGAAAGCAAGGGGAAAGATT
Found at i:168124 original size:63 final size:63
Alignment explanation
Indices: 168046--168211 Score: 278
Period size: 63 Copynumber: 2.6 Consensus size: 63
168036 TTCTTGCTAG
*
168046 TTGTATTACTAGAACTTGGAATTGTATAACTAGAACTTGGATTTCTGTAGCTAGAAATAGGAT
1 TTGTATTACTAGAACTTGGAATTGTATTACTAGAACTTGGATTTCTGTAGCTAGAAATAGGAT
* * *
168109 TTGTATAACTAGAACTTGGATTTGTATTACTAGTACTTGGATTTCTGTAGCTAGAAATAGGAT
1 TTGTATTACTAGAACTTGGAATTGTATTACTAGAACTTGGATTTCTGTAGCTAGAAATAGGAT
* *
168172 TTGTATTACTAGAACTTGGAATTGTGTTGCTAGAACTTGG
1 TTGTATTACTAGAACTTGGAATTGTATTACTAGAACTTGG
168212 TTCATCATAT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 94 1.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (63 bp):
TTGTATTACTAGAACTTGGAATTGTATTACTAGAACTTGGATTTCTGTAGCTAGAAATAGGAT
Left flanking sequence: Indices 167546 -- 168045
GCTTTTGATTTTACTACTTAGAGCGTCTAAACTACTACTTGGAGTGTCTAAAACAACACCAAGCC
CAACATTCTGTTTCATTGACTGCAGAAGGGGTATCTTATTTTCAAAAAAACTATTTAATATTCTG
TAATTATCAGGCAGATAGGGATGCCCTGTTATAAGACTTTTAATTGAAGTCAAAGGTATCCAAGG
TGCTAAAGTATATTTAAGAACACTTCCATCTTGAAAAATATATTTAAAATTCTTACTCCTCGAAT
AATTAAAAATAGACTTCATATTATTTCGATATGTTGGATTAAGATAATCAAGATTATATTTACGT
CGTATTGATGCTTTTCTACCATTCACATAATACCATATTTGTTCTTTTATAGGCATTTGTTGCTC
TCTTAAATGCATTATATCTCTTAATCTCTGTTTCTCACTTAAATTCACAGCAGAAGATGAGGAAG
ATGTGGAATCAATATTATTGGATGAGGAATCGATATTCTTGCTAG
Right flanking sequence: Indices 168212 -- 168711
TTCATCATATTGTTTGGTTCGTATCTCTGGTTTTTGTGATGTTAATTTCCAAAAAAGGGAGAATG
GAAAGCCTGAACTCATACAACGTGATTGAACCATCGGATACATTTGGTATGGGCCAAGCATCTGA
ACATTACAGAAATTGTCATAAGAATATCTCATCAAAGGATATGGTACATGATTCTTGCGTGAAAT
ACAAAAGGATGTACTTTTATGTAAAGATGAGGATACTGACACATTTATTGTGAATCTTGTACGGA
AAAAAGTCATATTTCGATTTTCTCTTTTTTAGCAGTTCAAAAGCAGGATTTTTATCTGCCTATGC
TAACTTTCACTCTATTTTTGTTCCCTTGCTGGTATGCTTGGCTTACTTGGATTGGGGTTATGGCG
TTGTTGCCATGGAAGCTTCTTTCAATCAAGATTGCATTCCCTTCCTTTGATTGAGAGAATAAAGA
ATGAAACTGGTTTCAGTGAAAGAAATGAAAGCAAGGGGAAAGATT
Found at i:182084 original size:6 final size:7
Alignment explanation
Indices: 182065--182089 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
182055 TTTCTGGAAG
182065 AGAAAAA
1 AGAAAAA
182072 AGAAAAA
1 AGAAAAA
182079 AGAAAAA
1 AGAAAAA
182086 AGAA
1 AGAA
182090 GTACCCCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AGAAAAA
Left flanking sequence: Indices 181565 -- 182064
GGATTATTCAAAAAGGAAAAGGCGCTACTATACAATACATTAGTAGAAGTAAGCGTTAGCCTAGC
CTACCCTACTAATGTATTGTATAGTGGGGTGTAGTATAATAGGCGAGCGAGTTAGCGAAGACGCT
TAGGCTAATAGATAAGAGAGCGTCGGTGCGTAGCCTTCATTCTACTACGCTACGCAAAGGTTACG
AAGTCACTTAGCTCGACGTTAGGAGAGTCAAGGGGGAACGCCATACTTACATAGAAGAACCGCAG
TTCGCTGACTTTCTACTTTAGAAGGTCTAACCTTTTGCTCTCCTACTGAAAAGGGGCAAAGCCGC
TTCGCACCACTGATAGACTACTTAAGATTCAATTCAAAAGGCCCTACTTAGTTTCGTAAGCCTTT
GCCATTGTCAGTCAACTAAGTAGGGCCTGAGGCCCCCTGCGAATCCGTAAATCTGAAGAGCATGC
CGCAACAAAAGGATGGTCCCCTATGCATTTCATTCTTTCTGGAAG
Right flanking sequence: Indices 182090 -- 182589
GTACCCCCCATCATGGTGAACCTCTCCTTGTGATCGGGATGAGGTAAATGCCTCCCAGCCGGGGG
GCAGATCAAATCGGAGTTTCCTTAGGTATCCACCGACCTACAGTTATCCTTAAACTTCCGTGCTT
GGTGGAGAAGAAGCGAACAAAGGTACGCTCGCTTGCTGTCTTGTTCTCTGCCGCGAACTGGGATC
GCTCGCCAGCTAGGTTAGATTGGAGCAACATTTTTTGAGAACATATTACCCATCTTCGGGGACAA
GGGGCGGAACGACCTCTCGATCTACTTACTGCAGCCCAGGAAGAAAAACGTCCGTCTAGGCGTTC
CCTGTTGCTCCGATCCCCCCTACGCCTAGGACGTTGTCTGGGCCAAGAGCCATAGTTAGTTGCTG
TTTTCATTTGGTTGTTTTTTCTCGTTGTTGATACCGGCAAGACCCAGCCAGATGATGTCTACTGG
TTGGTAGTGAGAGGACTCTTAGTATCTGCATACCCAAAAGAAAAG
Found at i:196458 original size:33 final size:33
Alignment explanation
Indices: 196416--196509 Score: 104
Period size: 32 Copynumber: 2.9 Consensus size: 33
196406 TCTTCCGCAC
* *
196416 CCGCCTCCGCCCCTCTCCCTATCGGTCGAGCAT
1 CCGCCTCCGCACCTCTCCCTATCGGTCGAGCAA
* ** *
196449 CCGCCTCCGCACCTCT-CCTTTTAGTCGAGTAA
1 CCGCCTCCGCACCTCTCCCTATCGGTCGAGCAA
196481 CCGCC-CC-CAACCTCTCCCTATCGGTCGAG
1 CCGCCTCCGC-ACCTCTCCCTATCGGTCGAG
196510 TGACCGCCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
30 1 0.02
31 8 0.16
32 26 0.52
33 15 0.30
ACGTcount: A:0.13, C:0.48, G:0.17, T:0.22
Consensus pattern (33 bp):
CCGCCTCCGCACCTCTCCCTATCGGTCGAGCAA
Left flanking sequence: Indices 195916 -- 196415
TCGTTCATTCCATCGGTATGCTCCCAGGTACCTGTAATTGTGATCCGTTTGCCAGAATCGAGGGG
TCTTTCTGTGGAAACCTTCACGAACAATCGTCGTTTTTTAATGGTTTTTCCGCTTCTCACAGCTG
CTCTTTTCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTCTTTCTTTGATAATA
GAGTTGGCTATCTTTGTGGCATCGATTGTACAAGTTCGTGAAGAGGGCTGGACGACTAGAATGAG
GGGGAACGGCTCGATCGACAAAAAAAAGATTAGCCCCCCTAGAACCTGGCAAAGTCACTATCAAA
GAATTCCCGAGAAATTCTCAACCGCGATTCAACCCCGTCAAGATTATAACACACAGAAGACTCCT
TACCGCCCTATCACACATAAGGGGGGAGCGGGATGAGTGATATATCCGGCGAGCGCCGGTAAAGA
ACGCAAGCAAAGCTGAGCTTTTCGGAGCGAACCAATCTTCCGCAC
Right flanking sequence: Indices 196510 -- 197009
TGACCGCCCTCTCCCTCTCCTTACAGTCGAGCCCGCTGACGCGACCCTCTCCCTGTAGGTCGAGC
CCGCCCCTCTACCTATCAGTTGAGCGTCTCCAAACCTCTCCCTATCGGTCGAGTCCGCTGCGCCC
CTCTCCCTGTCAGGTTGAGCGTCTACCTTCCTTTCCTTTCAGTCAAGCTACTTCGTGCCTCTCCT
TATCAGTCGAGTGCCCGCTGACGCACCTTCTTGTCTCGCTCGCTTACTCCATTTACTTTGCCTTT
CGTCTTACTCTTCTCTGTGCTTATGCTTATTTGAATTCCAGTTTGAAGTCTGCGTTTAAGGCTAT
TCGTAGACTGCTTTTGTTCCTAACCAACTAAATAATGGTTAAGTAAGTCAACAGATTGGATATGA
TTCTCTGTCCTTACTTTAGAGTGAATCTAGACTTTCGGGAAAGAGAGAGAGGACAGGGAAGGAAG
GTAGGGAAAGTAAGATTATAAGGGAGTTAACACTTCCACTTTCTC
Found at i:218368 original size:44 final size:44
Alignment explanation
Indices: 218305--218429 Score: 241
Period size: 44 Copynumber: 2.8 Consensus size: 44
218295 AGATGAAAAG
*
218305 AATCCTTTTCTTTTCATAAGTTGAATCTATAACATAAAACGAGC
1 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAAAACGAGC
218349 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAAAACGAGC
1 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAAAACGAGC
218393 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAA
1 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAA
218430 TAGACTCGAA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
44 80 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.37
Consensus pattern (44 bp):
AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAAAACGAGC
Left flanking sequence: Indices 217805 -- 218304
TCCTGAGAAATCGTTAGTTTTTTCCCATTTCTTTCTTGGTTGTTGACCGTCGCCAGGGGCCGAGG
AAGTTTCCCCCTGATTAAACCACCTTTCAATCCAGGAGCCACTCCACCCGGATGAGGTTGAGGTT
TCGAGAGCATCCACTCGGCGTCTTACCGAAGAAGGCCCGACGTCCTCTCTGGGATCAGAGCTCCT
TGTTCTCGAAGCGGGCTCGACTGTAAGGAGAGGAGCGGGGACATCTCAAAGTAGCCTAGGGGCAT
AAAAGTTTGGAAGGGAATTGCACAGGAATGCTAGACTCAGTCCAAGCACGAGAATGCCAAGAAAC
TGTAATGGTAGCTCAACCAAGGACTCTGAAAGCACTTTTTCCAGCATGAAGAAGGGAATTCAATT
ATATTATCATGAAGAAGGGAATTCCCGTATTGTATTAAGGGAATTTCATTATTTTTTGCTTCTAA
ATGCACCCAAAACTAAACAAAAAGAGCGGGGGGGAAGATGAAAAG
Right flanking sequence: Indices 218430 -- 218929
TAGACTCGAAAAGTGACTAAAAAGCGTGATGAGAATTCTCAACTCAAAATAAATGTTAGAAGGTG
CAAAATTAATGGGTGCCGGGGCTGCTACAATTGCTTCAGCGGGAGCAGCTGTCGGTATTGGAAAC
GTTTTCAGCTCTTTGATCCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATTATTTGGTTA
TGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCTAATGATGGCCTTTTTGA
TCTCATTTGTATTCCGACGACTATTGATTTTAGGAGGACTATAATGAGGAGGACGACAGACCCAC
TCACGATCTAATTCTAATAAAGGGCAAGTAGGTAACATATCAATAAGATATCCACGCAGATAAGG
ATCTAGAGGGAGACCACGACCTAACCATAATGAAAATGGCTTACCCGGATTTGGAGCATCACTTA
TTTATTTTCCTCGAATCCCGAAAGGCATTCTTGCAAAGAACCGCT
Found at i:235014 original size:22 final size:22
Alignment explanation
Indices: 234986--235029 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
234976 CATAGCTCAC
234986 CTAGTGCCAAGCTTAGGAGAAT
1 CTAGTGCCAAGCTTAGGAGAAT
235008 CTAGTGCCAAGCTTAGGAGAAT
1 CTAGTGCCAAGCTTAGGAGAAT
235030 TCTTCTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (22 bp):
CTAGTGCCAAGCTTAGGAGAAT
Left flanking sequence: Indices 234486 -- 234985
ATAGAAGTAGCCCAATCTGCGGGAAGTCATCTACGCTCAGCTGCGACAATTCCTGTAAAGACGAG
GGCTTAGAGAGTCGGGGTTGGTCGTGTCCAGTCATTAGACTGGAAGCTTGAATGTCCTAACTAAG
AAGGTAAGCCAGCTATCCCAACCATTGACATAGGAGCGAAGGCTTCGAGTTCGACTGATTCGGCA
GTTGATCTAGCTGTTTCCGCTTTTGCTTTTCCATTTGCTTCCACGACGAAAGGCCTAGTAGATAG
ATCTATTGGATGCTACCTCCCAACAGACGTCGCAAGAGGAATCAGCCACGTGGTCAACCTAAAAA
TAAGGGACCGGACCACAAGATAGCAAATACCTAAAAGGGGAAGAAAGGTAAAGAGTATGATGGGA
TCGGGAAAGCTGTTCCAAAGAAGTACACATCGGTAGAATGGGATTGATGCATAGGCTGCAAGGCA
AGGGAAAGGATAGGAAGAAAAGTAGCCCTTTGACACATAGCTCAC
Right flanking sequence: Indices 235030 -- 235529
TCTTCTTCCAAGTCAAGTGACTCCTAACCTCTCTGGCTCACTGACTAGCTAGCATAAAAAGTGTT
TCCATCAGATCAGGGCTTTTATTCTAAGAGGGTTACTTTCTCATCATCTATGTTTCAACGACCTG
GGATTGTGGCTATCACTCTCACCCCGTTCGAATCATCTATGCTATTCGGACACGAACGACTAAAA
GTCCCTTAGGACTGCCTGCACTGAGAGAGGCGTATAACTCTTCTCCCGGGTTGGGTTGGCCAGAA
TAGGGATTCCTGGTTGCTGGCCAGGCCGATATATAGATTATTGACCTCATGTACTGAGGTATGTG
TTGTCTTACAGTGAATTACATTGACCGCTTTGACAGCTAACGATTTGTGCGCATACCATTACCGA
TGGCTCGCAAAAAATCCTTTCAGAGTGACTGGCTTTGACCCTCCACGTCTGGGGGAACTGCCTTA
GTAGAAATTTTTAGCTCTTCCAATTTGACAGGTCATTATGGTTGG
Found at i:236583 original size:23 final size:23
Alignment explanation
Indices: 236553--236603 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
236543 TCGGTTATGA
236553 AATAAGAAATAACCCATTTAAGT
1 AATAAGAAATAACCCATTTAAGT
236576 AATAAGAAATAACCCATTTAAGT
1 AATAAGAAATAACCCATTTAAGT
236599 -ATAAG
1 AATAAG
236604 TAAGCCTCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 5 0.18
23 23 0.82
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (23 bp):
AATAAGAAATAACCCATTTAAGT
Left flanking sequence: Indices 236053 -- 236552
GAATAAGTTGTTGAAAAATCGGTTGCATCTAGTATATGTAAATATTCTCTTCAAGGGCTGAATCC
CTTGTTCTCAGCTGTTTTGCCCCCTCTCTATAAAAATATCCGATAGTCTATTTCCTATATAATAG
AGCCCAATCAACTTAGTGAGTTAGTCAAATTATCCCAAATTATCCACTGAGGAGGAAGAAGGAGT
GCTCTTTGAAAGTCAAGGAGCAAAGAAAGGCTTCTCCTGCGCTAGCTACCCCCGCTTCTTTTCCA
TGGTATAGCTAACTTATAATTATTAATTATACGCCGACCCGCTTGCATACCAATATCAAAGAAGG
GAGCTTCGGTCCCGTCTGTCTTGCTGCCTCCTGGAATGCATGAGACTGAGAAAATCTCTTCCTTA
GTAGAGGAACGATGTGCGCTAACCATATCACTCTTAAAGGATTTCACCCCGGTCCGTCTACCATT
ATTATACTATTATATATGTAATTTGACCTGGGAGTTCGGTTATGA
Right flanking sequence: Indices 236604 -- 237103
TAAGCCTCCCGCGGGAAACCACTTATGGTAAATGGTAAACCATCATACCCTGCCGACCTTGGCTA
TCGCCTTTCTGCACCGAAATCATCTCACTCAAGCCTTCTCCGCACTTCTCTTATGGCGGATTCTT
TAGCTCCTGCTATTCCTACTGAAAAAGCCTCGAATAGCTCTCTCTCCTTTTTTTTCTGGTTTTCA
CCCAACAGAAAGAGTCGCCCTTGCTTAGCCACAAAATTCATATATGAAATGACATGCGCAATATA
CGCTTTATTTTACAATTTTGAAATTATTTTAATATAAAAATAGTAGCATCTACTGCTTGAGATTC
TGATTGTGATTGAGGCCTAAGCCCTGACTTCGAGATTTTGGTTTGAGTTAGGCTGACCTCTTATT
CCCTTCGATAGTGGGCCTCGTTTTTTACTTTTCTAAATATTCTAAATAGAATATTTTTATATATA
GATCTTATCTATATCTATATCATCTGATATAGGTATTTTGCGAGC
Found at i:240003 original size:21 final size:21
Alignment explanation
Indices: 239977--240142 Score: 161
Period size: 21 Copynumber: 7.9 Consensus size: 21
239967 ATATGATGAA
** * *
239977 CCAAGTTCTAGCAACACAATT
1 CCAAGTTCTAGTTATACAAAT
*
239998 CCAAGTTCTAGTAATACAAAT
1 CCAAGTTCTAGTTATACAAAT
* * * * *
240019 CCTATTTCTAGCTACAGAAAT
1 CCAAGTTCTAGTTATACAAAT
* *
240040 CCAAGTACTAGTAATACAAAT
1 CCAAGTTCTAGTTATACAAAT
240061 CCAAGTTCTAGTTATACAAAT
1 CCAAGTTCTAGTTATACAAAT
* * * * *
240082 CCTATTTCTAGCTACAGAAAT
1 CCAAGTTCTAGTTATACAAAT
*
240103 CCAAGTTCTAGTTATACAATT
1 CCAAGTTCTAGTTATACAAAT
*
240124 CCAAGTTCTAGTAATACAA
1 CCAAGTTCTAGTTATACAA
240143 CTAGCAAGAA
Statistics
Matches: 115, Mismatches: 30, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 115 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (21 bp):
CCAAGTTCTAGTTATACAAAT
Left flanking sequence: Indices 239477 -- 239976
ACTCTAGTGTTCAATGGGTTATGACCACTGTTGACCGTTTCTGAGATAGATTCATCTCAGATCCT
AACTGAAGCGGAACGCCTAAAGATTCTGAAGAGAATACTGAATCAGATGAGCAAGAACGCCTTTC
ATGGATCAGATGAGTCAGAATCAGAAGTATTGAGACGAGAAGTCCATCTCAACAGATAAAAATCC
TGCTTTTGAACTGCTAAAAAAGAGAAAATCGAAATATGACTTTTTTCCGTACAAGATTCACAATA
AATGTGTCAGTATCCTCATCTTTACATAAAAGTACATCCTTTTGTATTTCACGCAAGAATCATGT
ACCATATCCTTTGATGAGATATTCTTATGACAATTTCTGTAATGTTCAGATGCTTGGCCCATACC
AAATGTATCCGATGGTTCAATCACGTTGTATGAGTTCAGGCTTTCCATTCTCCCTTTTTTGGAAA
TTAACATCACAAAAACCAGAGATACGAACCAAACAATATGATGAA
Right flanking sequence: Indices 240143 -- 240642
CTAGCAAGAATATCGATTCCTCATCCAATAATATTGATTCCACATCTTCCTCATCTTCTGCTGTG
AATTTAAGTGAGAAACAGAGATTAAGAGATATAATGCATTTAAGAGAGCAACAAATGCCTATAAA
AGAACAAATATGGTATTATGTGAATGGTAGAAAAGCATCAATACGACGTAAATATAATCTTGATT
ATCTTAATCCAACATATCGAAATAATATGAAGTCTATTTTTAATTATTCGAGGAGTAAGAATTTT
AAATATATTTTTCAAGATGGAAGTGTTCTTAAATATACTTTAGCACCTTGGATACCTTTGACTTC
AATTAAAAGTCTTATAACAGGGCATCCCTATCTGCCTGATAATTACAGAATATTAAATAGTTTTT
TTGAAAATAAGATACCCCTTCTGCAGTCAATGAAACAGAATGTTGGGCTTGGTGTTGTTTTAGAC
ACTCCAAGTAGTAGTTTAGACGCTCTAAGTAGTAAAATCAAAAGC
Found at i:240043 original size:42 final size:42
Alignment explanation
Indices: 239977--240142 Score: 181
Period size: 42 Copynumber: 4.0 Consensus size: 42
239967 ATATGATGAA
* *
239977 CCAAGTTCTAGCAACACAATTCCAAGTTCTAGTAATACAAAT
1 CCAAGTTCTAGCTACACAAATCCAAGTTCTAGTAATACAAAT
* * * *
240019 CCTATTTCTAGCTACAGAAATCCAAGTACTAGTAATACAAAT
1 CCAAGTTCTAGCTACACAAATCCAAGTTCTAGTAATACAAAT
* * * * * *
240061 CCAAGTTCTAGTTATACAAATCCTATTTCTAGCT-ACAGAAAT
1 CCAAGTTCTAGCTACACAAATCCAAGTTCTAG-TAATACAAAT
* * *
240103 CCAAGTTCTAGTTATACAATTCCAAGTTCTAGTAATACAA
1 CCAAGTTCTAGCTACACAAATCCAAGTTCTAGTAATACAA
240143 CTAGCAAGAA
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 1 0.01
42 99 0.98
43 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (42 bp):
CCAAGTTCTAGCTACACAAATCCAAGTTCTAGTAATACAAAT
Left flanking sequence: Indices 239477 -- 239976
ACTCTAGTGTTCAATGGGTTATGACCACTGTTGACCGTTTCTGAGATAGATTCATCTCAGATCCT
AACTGAAGCGGAACGCCTAAAGATTCTGAAGAGAATACTGAATCAGATGAGCAAGAACGCCTTTC
ATGGATCAGATGAGTCAGAATCAGAAGTATTGAGACGAGAAGTCCATCTCAACAGATAAAAATCC
TGCTTTTGAACTGCTAAAAAAGAGAAAATCGAAATATGACTTTTTTCCGTACAAGATTCACAATA
AATGTGTCAGTATCCTCATCTTTACATAAAAGTACATCCTTTTGTATTTCACGCAAGAATCATGT
ACCATATCCTTTGATGAGATATTCTTATGACAATTTCTGTAATGTTCAGATGCTTGGCCCATACC
AAATGTATCCGATGGTTCAATCACGTTGTATGAGTTCAGGCTTTCCATTCTCCCTTTTTTGGAAA
TTAACATCACAAAAACCAGAGATACGAACCAAACAATATGATGAA
Right flanking sequence: Indices 240143 -- 240642
CTAGCAAGAATATCGATTCCTCATCCAATAATATTGATTCCACATCTTCCTCATCTTCTGCTGTG
AATTTAAGTGAGAAACAGAGATTAAGAGATATAATGCATTTAAGAGAGCAACAAATGCCTATAAA
AGAACAAATATGGTATTATGTGAATGGTAGAAAAGCATCAATACGACGTAAATATAATCTTGATT
ATCTTAATCCAACATATCGAAATAATATGAAGTCTATTTTTAATTATTCGAGGAGTAAGAATTTT
AAATATATTTTTCAAGATGGAAGTGTTCTTAAATATACTTTAGCACCTTGGATACCTTTGACTTC
AATTAAAAGTCTTATAACAGGGCATCCCTATCTGCCTGATAATTACAGAATATTAAATAGTTTTT
TTGAAAATAAGATACCCCTTCTGCAGTCAATGAAACAGAATGTTGGGCTTGGTGTTGTTTTAGAC
ACTCCAAGTAGTAGTTTAGACGCTCTAAGTAGTAAAATCAAAAGC
Found at i:240078 original size:63 final size:63
Alignment explanation
Indices: 239977--240142 Score: 278
Period size: 63 Copynumber: 2.6 Consensus size: 63
239967 ATATGATGAA
* *
239977 CCAAGTTCTAGCAACACAATTCCAAGTTCTAGTAATACAAATCCTATTTCTAGCTACAGAAAT
1 CCAAGTTCTAGTAATACAATTCCAAGTTCTAGTAATACAAATCCTATTTCTAGCTACAGAAAT
* * *
240040 CCAAGTACTAGTAATACAAATCCAAGTTCTAGTTATACAAATCCTATTTCTAGCTACAGAAAT
1 CCAAGTTCTAGTAATACAATTCCAAGTTCTAGTAATACAAATCCTATTTCTAGCTACAGAAAT
*
240103 CCAAGTTCTAGTTATACAATTCCAAGTTCTAGTAATACAA
1 CCAAGTTCTAGTAATACAATTCCAAGTTCTAGTAATACAA
240143 CTAGCAAGAA
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 94 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (63 bp):
CCAAGTTCTAGTAATACAATTCCAAGTTCTAGTAATACAAATCCTATTTCTAGCTACAGAAAT
Left flanking sequence: Indices 239477 -- 239976
ACTCTAGTGTTCAATGGGTTATGACCACTGTTGACCGTTTCTGAGATAGATTCATCTCAGATCCT
AACTGAAGCGGAACGCCTAAAGATTCTGAAGAGAATACTGAATCAGATGAGCAAGAACGCCTTTC
ATGGATCAGATGAGTCAGAATCAGAAGTATTGAGACGAGAAGTCCATCTCAACAGATAAAAATCC
TGCTTTTGAACTGCTAAAAAAGAGAAAATCGAAATATGACTTTTTTCCGTACAAGATTCACAATA
AATGTGTCAGTATCCTCATCTTTACATAAAAGTACATCCTTTTGTATTTCACGCAAGAATCATGT
ACCATATCCTTTGATGAGATATTCTTATGACAATTTCTGTAATGTTCAGATGCTTGGCCCATACC
AAATGTATCCGATGGTTCAATCACGTTGTATGAGTTCAGGCTTTCCATTCTCCCTTTTTTGGAAA
TTAACATCACAAAAACCAGAGATACGAACCAAACAATATGATGAA
Right flanking sequence: Indices 240143 -- 240642
CTAGCAAGAATATCGATTCCTCATCCAATAATATTGATTCCACATCTTCCTCATCTTCTGCTGTG
AATTTAAGTGAGAAACAGAGATTAAGAGATATAATGCATTTAAGAGAGCAACAAATGCCTATAAA
AGAACAAATATGGTATTATGTGAATGGTAGAAAAGCATCAATACGACGTAAATATAATCTTGATT
ATCTTAATCCAACATATCGAAATAATATGAAGTCTATTTTTAATTATTCGAGGAGTAAGAATTTT
AAATATATTTTTCAAGATGGAAGTGTTCTTAAATATACTTTAGCACCTTGGATACCTTTGACTTC
AATTAAAAGTCTTATAACAGGGCATCCCTATCTGCCTGATAATTACAGAATATTAAATAGTTTTT
TTGAAAATAAGATACCCCTTCTGCAGTCAATGAAACAGAATGTTGGGCTTGGTGTTGTTTTAGAC
ACTCCAAGTAGTAGTTTAGACGCTCTAAGTAGTAAAATCAAAAGC
Found at i:240616 original size:21 final size:21
Alignment explanation
Indices: 240591--240631 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
240581 TTGGTGTTGT
240591 TTTAGACACTCCAAGTAGTAG
1 TTTAGACACTCCAAGTAGTAG
* *
240612 TTTAGACGCTCTAAGTAGTA
1 TTTAGACACTCCAAGTAGTA
240632 AAATCAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (21 bp):
TTTAGACACTCCAAGTAGTAG
Left flanking sequence: Indices 240091 -- 240590
AGCTACAGAAATCCAAGTTCTAGTTATACAATTCCAAGTTCTAGTAATACAACTAGCAAGAATAT
CGATTCCTCATCCAATAATATTGATTCCACATCTTCCTCATCTTCTGCTGTGAATTTAAGTGAGA
AACAGAGATTAAGAGATATAATGCATTTAAGAGAGCAACAAATGCCTATAAAAGAACAAATATGG
TATTATGTGAATGGTAGAAAAGCATCAATACGACGTAAATATAATCTTGATTATCTTAATCCAAC
ATATCGAAATAATATGAAGTCTATTTTTAATTATTCGAGGAGTAAGAATTTTAAATATATTTTTC
AAGATGGAAGTGTTCTTAAATATACTTTAGCACCTTGGATACCTTTGACTTCAATTAAAAGTCTT
ATAACAGGGCATCCCTATCTGCCTGATAATTACAGAATATTAAATAGTTTTTTTGAAAATAAGAT
ACCCCTTCTGCAGTCAATGAAACAGAATGTTGGGCTTGGTGTTGT
Right flanking sequence: Indices 240632 -- 241131
AAATCAAAAGCGTATCACTCCCATATGCTATAAAATACTCCTTTTTCTATGATCTTCGCTTTCAT
CTATTTCTTTTAATCATAATGGGATTTGCAATATGGATCAGCCTAGCCCCTGACCAACTATTAAA
TCAACCTGGGGCACTGTGTACACCCCATCTCAAAGACTTTATAAAGACAATCGAAGATGCTTATG
TTAAACATATTTGTTGTAGCCATCCAAATGTTCATAGCCCATGCGATTGCGGGGAGCCTATCAAT
AAAGTTGTAAGGGATTTGTTTCCACAAACATCCTTTGATCCACTCCAAATAGATAATAAAGAAAT
AGGAAAGATGAAAACAGTGACTATAATGGTTGCAACAATAATTCTATCTATTGCTCTTATGGAAT
CCGTTTCACACTTTGGTGTATACACGGATGTATGACAAATGATCAAAAGGGATCTTGGCTGGACA
CACAGCCTAATTAAGCTAAGGAATGATATGTAGACAGCCAACTTC
Found at i:241439 original size:23 final size:23
Alignment explanation
Indices: 241409--241455 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
241399 AATGGATGGA
241409 AGAAGATTGCTGGTTCAGTCAGT
1 AGAAGATTGCTGGTTCAGTCAGT
241432 AGAAGATTGCTGGTTCAGTCAGT
1 AGAAGATTGCTGGTTCAGTCAGT
241455 A
1 A
241456 ACTTCCGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (23 bp):
AGAAGATTGCTGGTTCAGTCAGT
Left flanking sequence: Indices 240909 -- 241408
GTTTCCACAAACATCCTTTGATCCACTCCAAATAGATAATAAAGAAATAGGAAAGATGAAAACAG
TGACTATAATGGTTGCAACAATAATTCTATCTATTGCTCTTATGGAATCCGTTTCACACTTTGGT
GTATACACGGATGTATGACAAATGATCAAAAGGGATCTTGGCTGGACACACAGCCTAATTAAGCT
AAGGAATGATATGTAGACAGCCAACTTCCATTTACCATAAGTCAAGCAGCTTTTAAGGCAAATTC
ATCCTTTATCCAGGCTCATTCACACCACTTCCACATGCTTACTGCTCGGGAGATTGGTGCTATAT
GTCAAATTGCCTCTCACAGCAGACCATGGTAAGTACAAAGGAGTTCCCTCATATAGAAGTACAAA
GAATGGGTACCTTCATATGGAAGACGGTCTCTAAAACCACATACAACCACATACTCAAAGTGAAA
GATAGGTTGGATGGATGGCAGGCTGCGCTGTTCCCAATGGATGGA
Right flanking sequence: Indices 241456 -- 241955
ACTTCCGCTATACCAGTATACACCATGCAAAGAAGGCCTATCTGGATGCAAAGAAGGCCTATTCT
GGTAGCCATAAAACAGTAAATAGATTGGATGAAGAGCTGATGGAAATAGATAGGATGAAGAGCTG
ATTAGTGTGGGGAAGAAGGCACACTAAAAGAAGAATGATTGAGTGGCTTGGGATTGAAAGAACAT
AGGCTGTCCCTCATGAGTGCGGCACGCATCATTGCCTTTCGCAGCAGAGCCAGCGTGGTCTTAAG
TCTTTGCTTTTGTATCCGAGAATGACAAGAAAGAAATGCTGCGAAGTGCGCTTGGTAGTCCCTAC
GAGGTAGTACTGCCAAAAGGTAGAACTCTACATCGGCCGGGTTAGGACACTATTCCTTCAAGTCT
TCAAAGATCGGATTCAATCGATTATTCGCATTCAACTTGAACTATTCTTGTGACAACAGACGGAA
TTCCATCCTTCCCTTTTATCAAAGGCAATAGGAAGTTCTCGATTT
Found at i:241506 original size:21 final size:22
Alignment explanation
Indices: 241480--241522 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
241470 AGTATACACC
241480 ATGCAAAGAAGGCCTA-TCTGG
1 ATGCAAAGAAGGCCTATTCTGG
241501 ATGCAAAGAAGGCCTATTCTGG
1 ATGCAAAGAAGGCCTATTCTGG
241523 TAGCCATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.21
Consensus pattern (22 bp):
ATGCAAAGAAGGCCTATTCTGG
Left flanking sequence: Indices 240980 -- 241479
TAATGGTTGCAACAATAATTCTATCTATTGCTCTTATGGAATCCGTTTCACACTTTGGTGTATAC
ACGGATGTATGACAAATGATCAAAAGGGATCTTGGCTGGACACACAGCCTAATTAAGCTAAGGAA
TGATATGTAGACAGCCAACTTCCATTTACCATAAGTCAAGCAGCTTTTAAGGCAAATTCATCCTT
TATCCAGGCTCATTCACACCACTTCCACATGCTTACTGCTCGGGAGATTGGTGCTATATGTCAAA
TTGCCTCTCACAGCAGACCATGGTAAGTACAAAGGAGTTCCCTCATATAGAAGTACAAAGAATGG
GTACCTTCATATGGAAGACGGTCTCTAAAACCACATACAACCACATACTCAAAGTGAAAGATAGG
TTGGATGGATGGCAGGCTGCGCTGTTCCCAATGGATGGAAGAAGATTGCTGGTTCAGTCAGTAGA
AGATTGCTGGTTCAGTCAGTAACTTCCGCTATACCAGTATACACC
Right flanking sequence: Indices 241523 -- 242022
TAGCCATAAAACAGTAAATAGATTGGATGAAGAGCTGATGGAAATAGATAGGATGAAGAGCTGAT
TAGTGTGGGGAAGAAGGCACACTAAAAGAAGAATGATTGAGTGGCTTGGGATTGAAAGAACATAG
GCTGTCCCTCATGAGTGCGGCACGCATCATTGCCTTTCGCAGCAGAGCCAGCGTGGTCTTAAGTC
TTTGCTTTTGTATCCGAGAATGACAAGAAAGAAATGCTGCGAAGTGCGCTTGGTAGTCCCTACGA
GGTAGTACTGCCAAAAGGTAGAACTCTACATCGGCCGGGTTAGGACACTATTCCTTCAAGTCTTC
AAAGATCGGATTCAATCGATTATTCGCATTCAACTTGAACTATTCTTGTGACAACAGACGGAATT
CCATCCTTCCCTTTTATCAAAGGCAATAGGAAGTTCTCGATTTCGAACAAAAAGGCTATTCGAGT
ACAAGCCAAGGAGAAAGACCGCCCTCTCAGGCATACCATCGACAG
Found at i:241576 original size:26 final size:26
Alignment explanation
Indices: 241538--241587 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
241528 ATAAAACAGT
*
241538 AAATAGATTGGATGAAGAGCTGATGG
1 AAATAGATAGGATGAAGAGCTGATGG
241564 AAATAGATAGGATGAAGAGCTGAT
1 AAATAGATAGGATGAAGAGCTGAT
241588 TAGTGTGGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.04, G:0.32, T:0.22
Consensus pattern (26 bp):
AAATAGATAGGATGAAGAGCTGATGG
Left flanking sequence: Indices 241038 -- 241537
TGTATACACGGATGTATGACAAATGATCAAAAGGGATCTTGGCTGGACACACAGCCTAATTAAGC
TAAGGAATGATATGTAGACAGCCAACTTCCATTTACCATAAGTCAAGCAGCTTTTAAGGCAAATT
CATCCTTTATCCAGGCTCATTCACACCACTTCCACATGCTTACTGCTCGGGAGATTGGTGCTATA
TGTCAAATTGCCTCTCACAGCAGACCATGGTAAGTACAAAGGAGTTCCCTCATATAGAAGTACAA
AGAATGGGTACCTTCATATGGAAGACGGTCTCTAAAACCACATACAACCACATACTCAAAGTGAA
AGATAGGTTGGATGGATGGCAGGCTGCGCTGTTCCCAATGGATGGAAGAAGATTGCTGGTTCAGT
CAGTAGAAGATTGCTGGTTCAGTCAGTAACTTCCGCTATACCAGTATACACCATGCAAAGAAGGC
CTATCTGGATGCAAAGAAGGCCTATTCTGGTAGCCATAAAACAGT
Right flanking sequence: Indices 241588 -- 242087
TAGTGTGGGGAAGAAGGCACACTAAAAGAAGAATGATTGAGTGGCTTGGGATTGAAAGAACATAG
GCTGTCCCTCATGAGTGCGGCACGCATCATTGCCTTTCGCAGCAGAGCCAGCGTGGTCTTAAGTC
TTTGCTTTTGTATCCGAGAATGACAAGAAAGAAATGCTGCGAAGTGCGCTTGGTAGTCCCTACGA
GGTAGTACTGCCAAAAGGTAGAACTCTACATCGGCCGGGTTAGGACACTATTCCTTCAAGTCTTC
AAAGATCGGATTCAATCGATTATTCGCATTCAACTTGAACTATTCTTGTGACAACAGACGGAATT
CCATCCTTCCCTTTTATCAAAGGCAATAGGAAGTTCTCGATTTCGAACAAAAAGGCTATTCGAGT
ACAAGCCAAGGAGAAAGACCGCCCTCTCAGGCATACCATCGACAGAGTAAGGAAAGGACTGGGAG
AAGGCTCGTAAGACCACATTCAGACCAGCAGCCAGCCCTGCTAAC
Found at i:247487 original size:33 final size:33
Alignment explanation
Indices: 247433--247499 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
247423 ACCAAGCTCT
* *
247433 CCCCTCCTCTCGCTGTAGGTCGAGTGACCGCCC
1 CCCCTCCACTCCCTGTAGGTCGAGTGACCGCCC
*
247466 CCCCTCCACTCCCT-TACGGTCGAGTTACCGCCC
1 CCCCTCCACTCCCTGTA-GGTCGAGTGACCGCCC
247499 C
1 C
247500 ACCCCTTACG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 28 0.93
ACGTcount: A:0.10, C:0.49, G:0.19, T:0.21
Consensus pattern (33 bp):
CCCCTCCACTCCCTGTAGGTCGAGTGACCGCCC
Left flanking sequence: Indices 246933 -- 247432
TCATAGCTTTCATATTCCAAGCACAAAGTCTTCCCTGCCAGCTCTGAGGCAATCTGCCTATCGCT
CTCTTTATCCTCACTCATGAAGGGAGTCTTTCATTCTTGGTGGGGGGAGGGAACTTATACTGTAT
ATAAGGTTTTTCAGGCTATTAGCTCTCCCGCTACGCTAGCACTTAAGAGACTATCTTAGCCCCCG
AGTGAGAGATCACAATAAGGAAGGTGAACCTATAGTAGGCAGTACAGCGGTACCAGTCCACGACA
ACCATTTCTGTAACTGAACTTCCTGCCCCCCACCTACCATCTCGTGTTAACACTCTCACGCTTTT
TTGATAACGAAATACATCATCGACTTGAAAACAATAGGTCTTGTCACGAGCTGGATTCGAACCAG
CGCTTCCCAGATCCAATCCGGATTTCAACCTTTCTGATCGTGACTTAAAAAGAAAGAAGAGAAGA
GAAAGAACTGGGAGTTGGCGCCTGCTTGCTTGCTTACCAAGCTCT
Right flanking sequence: Indices 247500 -- 247999
ACCCCTTACGGAGAGGATACTCTAAGGCTATCCCAATTAGAATAAGCCAAAAGAAAGATCTATTT
CTAATTGATATGCCCCAATTATCATCATTTATCATCTTGCGGCGCTATTTGCTTGTAGTGTGAAT
CTATCTTTCAAAGAGCAGCATGTAACTAATACTCATTAGGATCCCATATCTTTAAGGATCCCATA
TATCTATCTTTCTATCAGAGTTAACAAAAACAGTACATCCACCTTCACATTGAATAGGATGATTA
TTATTTAGCCCAGTTGTCTGAATAAATCCAATAAGGTTGAGTTTATTTAATAGCACTGTAATTTC
ATTTAAATTAATATGATCATTATCGCGGCATACAATAAACACTTCAGATTGGATTCGAATCCATT
CTCGTACTTAGGGAAAGTTTCCATTTCTTAGTCTAAGTAAGCTCATAGATCCAACTCAATCTTTT
ACACCGATGTATCGTACTCCCTCGACCAGGTCATCATAAGATAAT
Found at i:259931 original size:27 final size:26
Alignment explanation
Indices: 259889--259985 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 26
259879 GCTCTCCCCT
* *
259889 CCTCT-CCTGTAAGTCGCCGCTGCGCC
1 CCTCTCCCTGTAGGTCG-AGCTGCGCC
*
259915 CCTCTCCCTGTAGGTCGAGC-CCGCC
1 CCTCTCCCTGTAGGTCGAGCTGCGCC
*
259940 CCTCTACCTGTAGGTCGAG-TGCCCGCC
1 CCTCTCCCTGTAGGTCGAGCTG--CGCC
259967 CCTCTCCCTGTAGGTCGAG
1 CCTCTCCCTGTAGGTCGAG
259986 TGACTGCATA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
25 22 0.36
26 7 0.11
27 32 0.52
ACGTcount: A:0.09, C:0.43, G:0.25, T:0.23
Consensus pattern (26 bp):
CCTCTCCCTGTAGGTCGAGCTGCGCC
Left flanking sequence: Indices 259389 -- 259888
AAAAATGAAGAAAAAAGAGAGCGAGCGCACCTCTCGGGTGAGGGGCGCGAACGGCCTTAACCAGT
CGCGCGGCGGGGGGGAGAAGCTGTTGCAGAATCGTGATGTTTGGGCTTATTTCTTCATCTGGAAT
CTTTCCTGTTGCAGTAGCAGTACGATTGAAGTATGAGTTTAGCAATTTCAGTCTTTCAGTAGTTA
AACACGATTTCAGTATTCAATCTATCCTTTGTTCTGGAGTTCAGGACTTCTTTTCTATGGTCTCT
TTTCTTTAAACTTAAGCCCTCTTTTCTTTAAGCTCTCTTCTAGGGAATTTGCTTGATCTAGTAAC
AAGTCTCGATAAGCTGTCGAAATCAGACAATTCGTTAAAAGAGATATCTGATCGATCTGTCTTTC
TTCTCCGGCCAAGATGAGGGGCGTCTTTTGATCATCCAGTTCTGCATTTTGTGCTTTTCTTGCAG
GGACTCTTTCTTTGGTTGTCTCCTTGAGATAGTTTGCTCTCCCCT
Right flanking sequence: Indices 259986 -- 260485
TGACTGCATACCTCCGTCCCTCTCGTTGCACTCGAGTGACCGCTGCGCCCCTTTCCTTTCAGTCG
AGCTACTTCGTGCCTCTCTTGTGTCGATTGTTCTGCTAGCTCCTCTTTGGACCGCCATCAGAAAG
GAATCAGGTAAGTAAGCCTCCTGCTATCTATCACCACTTCCTAATAATAAACTAACTAGATGATG
TTTTTGATCCCATATTGTTCATCCGTTTACGTAGAGGCGAAAAGTGGCTTTCCAGAGGGGTATTC
GTACACAGAAAAGGTCAATCTTTTTCAAAGCAATCTGGACTAGCTCAAAAAGGTGTAATTCCATG
TTGGTTCGGTTCCTCCACTTTCTTTGCTGGACAATAAGAAGCAAATTGGTAAAAAAGACATTTTG
TAGCCTAAAACCCCGGGAGTTAACAACCGCCCCGGCCCAAACATGAGCCGAACCCTTTGTTTCTA
CGCTCATCAGAGATCAAGCTTGTCGAGAAAGTTTTCTTTGTCCGG
Found at i:259986 original size:27 final size:27
Alignment explanation
Indices: 259911--259987 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
259901 GTCGCCGCTG
259911 CGCCCCTCTCCCTGTAGGTCGA--GCC
1 CGCCCCTCTCCCTGTAGGTCGAGTGCC
*
259936 CGCCCCTCTACCTGTAGGTCGAGTGCC
1 CGCCCCTCTCCCTGTAGGTCGAGTGCC
259963 CGCCCCTCTCCCTGTAGGTCGAGTG
1 CGCCCCTCTCCCTGTAGGTCGAGTG
259988 ACTGCATACC
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 21 0.44
27 27 0.56
ACGTcount: A:0.09, C:0.43, G:0.26, T:0.22
Consensus pattern (27 bp):
CGCCCCTCTCCCTGTAGGTCGAGTGCC
Left flanking sequence: Indices 259411 -- 259910
GAGCGCACCTCTCGGGTGAGGGGCGCGAACGGCCTTAACCAGTCGCGCGGCGGGGGGGAGAAGCT
GTTGCAGAATCGTGATGTTTGGGCTTATTTCTTCATCTGGAATCTTTCCTGTTGCAGTAGCAGTA
CGATTGAAGTATGAGTTTAGCAATTTCAGTCTTTCAGTAGTTAAACACGATTTCAGTATTCAATC
TATCCTTTGTTCTGGAGTTCAGGACTTCTTTTCTATGGTCTCTTTTCTTTAAACTTAAGCCCTCT
TTTCTTTAAGCTCTCTTCTAGGGAATTTGCTTGATCTAGTAACAAGTCTCGATAAGCTGTCGAAA
TCAGACAATTCGTTAAAAGAGATATCTGATCGATCTGTCTTTCTTCTCCGGCCAAGATGAGGGGC
GTCTTTTGATCATCCAGTTCTGCATTTTGTGCTTTTCTTGCAGGGACTCTTTCTTTGGTTGTCTC
CTTGAGATAGTTTGCTCTCCCCTCCTCTCCTGTAAGTCGCCGCTG
Right flanking sequence: Indices 259988 -- 260487
ACTGCATACCTCCGTCCCTCTCGTTGCACTCGAGTGACCGCTGCGCCCCTTTCCTTTCAGTCGAG
CTACTTCGTGCCTCTCTTGTGTCGATTGTTCTGCTAGCTCCTCTTTGGACCGCCATCAGAAAGGA
ATCAGGTAAGTAAGCCTCCTGCTATCTATCACCACTTCCTAATAATAAACTAACTAGATGATGTT
TTTGATCCCATATTGTTCATCCGTTTACGTAGAGGCGAAAAGTGGCTTTCCAGAGGGGTATTCGT
ACACAGAAAAGGTCAATCTTTTTCAAAGCAATCTGGACTAGCTCAAAAAGGTGTAATTCCATGTT
GGTTCGGTTCCTCCACTTTCTTTGCTGGACAATAAGAAGCAAATTGGTAAAAAAGACATTTTGTA
GCCTAAAACCCCGGGAGTTAACAACCGCCCCGGCCCAAACATGAGCCGAACCCTTTGTTTCTACG
CTCATCAGAGATCAAGCTTGTCGAGAAAGTTTTCTTTGTCCGGCT
Found at i:264788 original size:30 final size:30
Alignment explanation
Indices: 264754--264877 Score: 239
Period size: 30 Copynumber: 4.1 Consensus size: 30
264744 CTTACCGAGG
264754 GGCGCAGCTCCGGCGACCGTAAGGGAGAGA
1 GGCGCAGCTCCGGCGACCGTAAGGGAGAGA
264784 GGCGCAGCTCCGGCGACCGTAAGGGAGAGA
1 GGCGCAGCTCCGGCGACCGTAAGGGAGAGA
264814 GGCGCAGCTCCGGCGACCGTAAGGGAGAGA
1 GGCGCAGCTCCGGCGACCGTAAGGGAGAGA
*
264844 GGCGCAGCTCCGGCGACCGTAAGGGAGAGG
1 GGCGCAGCTCCGGCGACCGTAAGGGAGAGA
264874 GGCG
1 GGCG
264878 GGCTCGACCG
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
30 93 1.00
ACGTcount: A:0.22, C:0.27, G:0.45, T:0.06
Consensus pattern (30 bp):
GGCGCAGCTCCGGCGACCGTAAGGGAGAGA
Left flanking sequence: Indices 264254 -- 264753
TTCAAATGCTAATGGCCTTCTTACAACTTTCTTTTTGAAGCAGATAGTTCAGAGTGCTTATTCTA
TAGATATAGATAGTGTAAAAGCCAACTCATTCGAAAACTATTGATCAGTATGACCGTACTGTGAA
TTACTTGCTTGCTTTGGAATTGGAAGAGGGCAGCCCTCTTTTTTCCATCTGTGGATACGTTGGTA
GACTGCATCGAGATGGCCCTTTTCCTCATGGAAATTCTTCCTCTTTCCATTGAAGGCGGTGGAAG
CCGTGTCGGCCCTTCGCAACTTCCCGCGGCTAAGGTACAAAAAGACTTTCATCAAAAAGTGACAC
GGCTGAAAGCCCGAGTGAAGTTCTTAGAATTAGCACAAGATTTTCTTATCTGGAAAAGAAAAGCT
ATGCAATTCTTACAAGACGTTGCTTGGAAGCGGGGGGGCCGCTTGGACTTGGAAGCAAGCTACAG
CTACCTTGAATCAATCAATGAATGAAAAGAAACCGCTTACCGAGG
Right flanking sequence: Indices 264878 -- 265377
GGCTCGACCGTAAGGTAGAGGGGCGGGCTCGACCGTAAGGGAGAGGAGGGGATTGCCAGGATCGC
TTGGTAAGCAAGCAAGCAGGCGCCAACTCCCAGTTCTTTCTCTTCTCTTCTTTCTTTTTAAGTCA
CGATCAGAAAGGTTGAAATCCGGATTGGATCTGGGAAGCGCTGGTTCGAATCCAGCTCGTGACAA
GACCTATTGTTCAAGTCGATGATGTATTTCGTTATCAAAAAAGAATTCATTAAGCACAAAACGAT
AAAGCTGAAAAGGATTAGGAATGAATAGAGAAATATTCAGTCTAGTTCGCCGCATGCAAGCGAGG
TGGAAGAAAGCAAGAAGTCAAGCCAGTCACTGAACACCAAAAATGAATAAAGGGAAAAGCAACTA
CACTTGTGAACTCGGATAGCCTTGTGGCTTTATCTAGGTAACTTGATTCTCTTATGAGATTTTTA
GTAATAGGGTCAAATCCGTCCTAAAAGGAAGCATTTGAACGAGAG
Found at i:264887 original size:25 final size:25
Alignment explanation
Indices: 264857--264923 Score: 125
Period size: 25 Copynumber: 2.7 Consensus size: 25
264847 GCAGCTCCGG
264857 CGACCGTAAGGGAGAGGGGCGGGCT
1 CGACCGTAAGGGAGAGGGGCGGGCT
*
264882 CGACCGTAAGGTAGAGGGGCGGGCT
1 CGACCGTAAGGGAGAGGGGCGGGCT
264907 CGACCGTAAGGGAGAGG
1 CGACCGTAAGGGAGAGG
264924 AGGGGATTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.49, T:0.09
Consensus pattern (25 bp):
CGACCGTAAGGGAGAGGGGCGGGCT
Left flanking sequence: Indices 264357 -- 264856
TATTGATCAGTATGACCGTACTGTGAATTACTTGCTTGCTTTGGAATTGGAAGAGGGCAGCCCTC
TTTTTTCCATCTGTGGATACGTTGGTAGACTGCATCGAGATGGCCCTTTTCCTCATGGAAATTCT
TCCTCTTTCCATTGAAGGCGGTGGAAGCCGTGTCGGCCCTTCGCAACTTCCCGCGGCTAAGGTAC
AAAAAGACTTTCATCAAAAAGTGACACGGCTGAAAGCCCGAGTGAAGTTCTTAGAATTAGCACAA
GATTTTCTTATCTGGAAAAGAAAAGCTATGCAATTCTTACAAGACGTTGCTTGGAAGCGGGGGGG
CCGCTTGGACTTGGAAGCAAGCTACAGCTACCTTGAATCAATCAATGAATGAAAAGAAACCGCTT
ACCGAGGGGCGCAGCTCCGGCGACCGTAAGGGAGAGAGGCGCAGCTCCGGCGACCGTAAGGGAGA
GAGGCGCAGCTCCGGCGACCGTAAGGGAGAGAGGCGCAGCTCCGG
Right flanking sequence: Indices 264924 -- 265423
AGGGGATTGCCAGGATCGCTTGGTAAGCAAGCAAGCAGGCGCCAACTCCCAGTTCTTTCTCTTCT
CTTCTTTCTTTTTAAGTCACGATCAGAAAGGTTGAAATCCGGATTGGATCTGGGAAGCGCTGGTT
CGAATCCAGCTCGTGACAAGACCTATTGTTCAAGTCGATGATGTATTTCGTTATCAAAAAAGAAT
TCATTAAGCACAAAACGATAAAGCTGAAAAGGATTAGGAATGAATAGAGAAATATTCAGTCTAGT
TCGCCGCATGCAAGCGAGGTGGAAGAAAGCAAGAAGTCAAGCCAGTCACTGAACACCAAAAATGA
ATAAAGGGAAAAGCAACTACACTTGTGAACTCGGATAGCCTTGTGGCTTTATCTAGGTAACTTGA
TTCTCTTATGAGATTTTTAGTAATAGGGTCAAATCCGTCCTAAAAGGAAGCATTTGAACGAGAGT
TTCACCTTCCATAGGGAAAAGAGAAGTTCTTCAGGAAAACCACAA
Found at i:273063 original size:21 final size:21
Alignment explanation
Indices: 273022--273066 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
273012 TTCTTGTGAA
* *
273022 TAAGAAATGTCTTTCATGTTC
1 TAAGAAATGTATTTCAAGTTC
273043 TAAGAAATGTA-TTCTAAGTTC
1 TAAGAAATGTATTTC-AAGTTC
273064 TAA
1 TAA
273067 TTATGAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (21 bp):
TAAGAAATGTATTTCAAGTTC
Left flanking sequence: Indices 272522 -- 273021
GTGGCCTTCAATGGGCCCTAGAAGCCGGGATTCATGAAGGTCTAACTTTCCAAGCAAGGCCAAGG
CATAACTCTAGTTCCTTCAGTAGGGGAGCGAGTTACATAACCTGGAACGAGTCAATAAAACGACG
CAGGAGCGAGTCTAAAAGGGGAGCACATATGTAACGAGCAGCGAGCAGGAGAAGCTAAATCTCTT
TATCTTTTTTAACTGGTTGATCCTTGATCTTGAATTGACAAATTGTATGTTATGTTAAGAATGGG
AGGAAAGGTAAGGGACGACTTTTTGAGATTGTCTTTCGTTGTAATGTAATCAATTAAATGAAGGA
ATGGCTTAATCGATAAAAAAAAGGTCTTGTGCTTTTTGAAGTGAAGCGAGCCCTTCCCTTACTTA
CTTGAAATTGAAATGAAAGAAGAACGAGTAGGTAAGGTGTTTTCCTTTAATGTATCTTCCAGGGT
ATTCTGTCTATATATTGTGATTATGTTAATTAAGTTTCTTGTGAA
Right flanking sequence: Indices 273067 -- 273566
TTATGAATATGTATATTGCGTGGTGTTTGTGTTTCCGATCAAAGATTCTCTGTGTGGCCGTAGAA
TCTATATTTAGTGATGAGGTGAGGACCGTTGCCTGTTGAGGACTTCCGACTTGGATTACCAGTTT
CTCATTCACCTGCGAACAACTAGAGACAGATAGAGGTGGGATACTAGAGAGAGATCGTACTATTC
GAAGTTTATCTTTCAGCTTTCACCACTCGAACACTTCCTTCAGCAAAATTGGGATGAATTCAGAT
TAGGGAAGCCGGCACGCACTGGGGACAGCTAACAACGTGTAGTGACTGTACCACTCTCTTTGACT
CACATCGGGCACTCCACCGTCATGATTTAAGGAAGCAGGCTAGCTAGTGCTATAGATATAGATTG
AGTCCGGCAAGCTTTTAAGTAAATACAAGGTGCTCCACTTCTAGAATATTAAGTAACTAATTGGG
GAAGAAGGAAGGCAAGCAACAAAGAAGTCATTCATTGGCGAGGAA
Found at i:288832 original size:18 final size:18
Alignment explanation
Indices: 288792--288834 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
288782 CCCGCCCTGC
288792 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
288811 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
288828 CATAGTC
1 CATAGTC
288835 AACAAGGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 288292 -- 288791
CCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGA
ATTGGATGATCGGGCCGAGGACTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAACCTT
GAGTCATCAAAGCCTTTCAGACTCGGCCTGGCCCGGTCCCCCTACCTTTAAGGTTTTGCAGATAA
GCGCTTCAAAAGGCGAAACTCTCGTCGGGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGACTC
TGAAGTGGGCTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCGTAGGCTCCGCGCACCT
GTCCTTCCTTTCGAAGCACTTTCTAGTGTGCGCTTGAGTTTGAGAATGTGTCGTTCAGCGTCACG
AGTCTACAAGCCTTTAGAATTTCAGTGCTCGCCTTTTGAATCTTCATCTTCAGTAGGGGCCTTTA
GTCTTTTGATTAGAGTAGGGGTCGCGAGAGAGCGTCCCGCCCTGC
Right flanking sequence: Indices 288835 -- 289334
AACAAGGTGGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGAAAGGAGAAGTGTTCTAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:315682 original size:28 final size:28
Alignment explanation
Indices: 315642--315698 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
315632 CTCCGGGATA
315642 CAGGGACGAAGTGGGCTGCTTTCAAGGG
1 CAGGGACGAAGTGGGCTGCTTTCAAGGG
315670 CAGGGACGAAGTGGGCTGCTTTCAAGGG
1 CAGGGACGAAGTGGGCTGCTTTCAAGGG
315698 C
1 C
315699 TAGAATATCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.19, G:0.42, T:0.18
Consensus pattern (28 bp):
CAGGGACGAAGTGGGCTGCTTTCAAGGG
Left flanking sequence: Indices 315142 -- 315641
ATTGAGTTCGATTTGAACTAGTTTCAAAGGCTGGATTTCCCTTAGGGAGAACTAGAATCCTATCC
TCATCTCTTTCCCTCTTATGTCATTTTGAGACAAAAAGAAGTAGGGATTTGATCGATGGAACGCC
TTTGTGAAGTCTAGCTCTGTTCTACGCCCGCCCCTAAAGAGAAATGCTTTATATGATCTTCTTTT
TTCTAGGGAATCCGCGCTTACTAGACCCTTTTTTTGCAGGCAGGATCTGAAAAGACTAGCTGGAC
CCGGTTCTGACTAATCACTAAGAGCTCATCGCGAGTTCTCTCGGGACGGTACCTCAGTTGGGCAT
TAAGTACGAAGTAAGCCAAGTGAAGTGATCCCTGCGGCCTATACTATAAGAGAAGGAAAGCACTT
CTTACTCGCATCCCCCTTAAGATGTTAATATTCACGTTTCACAAGAAAGATGGAATCGTGGAATT
GATTTGAGTTAGATGAGCTCCTTAAGCTAAGGTAACTCCGGGATA
Right flanking sequence: Indices 315699 -- 316198
TAGAATATCCCTGTTTCGACGTGAGATTGGCTTAGCTTGGTCTTTCTGTGTACCTAGAGTCAGTC
TGCCCATAGCGTAGTAAAAGCTTTCAAGATTCTGGTCCGGTTCGAGAAGCTAGCCTTATAAAGTC
TGATTTTAGGGATCCTTTTTTTAGTAAAGTACCCGTGGGATTCGATTTGCCAACTGATCCGAGTT
GGATTGGGTCAGGAACGGTAATAAGGCTCTAGTTCGACTAGCAGCTTGAACGTGGCGAGAGGGAG
AAAGAAATAGCAAGTACTACTCTTTCTCTTTGAACGAATCCGAAGTTCGAAGGGGAGATGGATTT
GATTTGAACCTAAATCCTTGGATCGCCCATGTGTCTATGAAGAGGTTAAGCTAAGCCACTTCTTT
CGCCTTTAGCTTGACAGTAGGAATGGAATGTGATCTTTGCCTTTAAGCTTTGAGCTTGGCAGTAG
GATGTGAAGCTGTGAACAAAGAGTATCCTGTCCCGTCTTAGACTG
Found at i:339842 original size:30 final size:30
Alignment explanation
Indices: 339824--339888 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
339814 TGACGCGGCC
*
339824 CTCTCTCTTACGGTCGCCGGAGCTGCGCCT
1 CTCTCCCTTACGGTCGCCGGAGCTGCGCCT
*
339854 CTCTCCCTTACGGTCGCCGGAGCTGCGCCC
1 CTCTCCCTTACGGTCGCCGGAGCTGCGCCT
339884 CTCTC
1 CTCTC
339889 GTTGCACTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.06, C:0.45, G:0.25, T:0.25
Consensus pattern (30 bp):
CTCTCCCTTACGGTCGCCGGAGCTGCGCCT
Left flanking sequence: Indices 339324 -- 339823
GAACAGCGTAGCGACGGATAATTCTGAATCATCATAGGTCCAGTCCAGGGGACAAATCAATAGGA
AATGCTATTTGCTTTGTAAGAATAAGAATTCACTTCTATGAAATGAAATAGTTTCACGGGAATTG
TCTTGATCGTCGGATATCATTGATAAATAGGAAGACTTTTTATCGAACGATTTCTTGCAATTCTT
CCCAGTATGGAATGAGTAAAGAATCAAGCTACAAGTCTCGATCTATACAAAACGCACTGGTTTTT
TTTTTCTTTCTTTTGGTTTCATTGATAGCAGAAGAGCCTTCTTCTATTTCTATAGGGGCGCTAAC
GCTTTACTAATAGAATATCCAGTCAAGGGGCCTGAAAAACGAAATAGGCTGCTACTCTAGGCTCG
CTTCGCTTCTTTTCAAGCTCCGCCCCTTATTGAAGACTAAAGCGCTAACCATCCCTCTCCTTTCA
GTCGAGCCCGCCTCCGTCTCTCTCCCTTACGCCGCTGACGCGGCC
Right flanking sequence: Indices 339889 -- 340388
GTTGCACTCGAGCTCTTCAACCCAACTCTTTTTTAGTAAAGCAACCTTTCGCCTTTCTTTTTTAT
AAAGCAAAGCGCTCACGTTTTTTATCTGGGTGAAAGCTGGCGGCAGGGCTTGCTTAACCGCCGGA
ATTGAGATCTCTCTCACATGCAACTCTTTCTATCGGGAAAGCCTTGCTTATTCAAAGGGCTGATT
ATTTAGAACCTTTTTTTTTTCCTCTGCATCGGTGGAGTCAGCCTTGGTTGGTAGGAGCGGCGGGA
TGATGATGAGTATATAAATCAATAAAGACCAAAAAGCAGAAATGGCAAGAGAAAGACGATATCGA
TAGAGGAAATAACCATGTGGAAAACAGGGCAGGGATTCTCGACAATGACACTCGTAGACCAATTG
AAAGGGATGTAGCGCAGCCTGGTAGCGCCCTTGTTTTGGGTACAAAATGTCATGGGTTCCAATCC
TGTCATTCCTACCTATTACTTCTCCTCTGGGCAGTAACGAGGAAT
Found at i:342055 original size:20 final size:20
Alignment explanation
Indices: 342017--342057 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
342007 TTATAAGGAC
* *
342017 GGACTAAAGAAAGCGTAGTT
1 GGACTAAAGAAACCATAGTT
342037 GGACTAAAGAAACCATAGTT
1 GGACTAAAGAAACCATAGTT
342057 G
1 G
342058 CATGGAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (20 bp):
GGACTAAAGAAACCATAGTT
Left flanking sequence: Indices 341517 -- 342016
AACTGGTATTCCAGTGATCGGTTTAATAGGTATTTGCTTTTCTGGTTCATATTCCGGATTGGGTT
CATCCTTGTAGTAATCGGATAAACTGGGTTGTAGCTGTTCCGATTCAAAATCACAAAAGAACCGG
GCAGCTGTAGGAAGCCCTAAAGAGGAAAGGGGCAGGAGCACTCGACCCTTGAGAAATGAACAGAT
TCTTTTCTCTGATTTTTGTCAAAACCCAGGCGGCGAAGTTTCGAATAGAGGCCGAAAGGCGTGAG
TACAGTAGACGTTTGAAAGACTATATAGAACTGAAATCTTTCATCCCAGTCTCGAAATAGGCTGT
GTCGAGACTGCAATTATTGCTTTTGGGTTATTTCACATTTTGAAAGTGCGATGGTTGGGAGGGGT
CAAGCTTAGAGACTTTTCATTTGTGGGGAATCAAACTATCACGCAACTTGCATTCTGGTTCTACA
TATCGAATTGGGGAATTCCGGTTTGATTTTCATTTTTATAAGGAC
Right flanking sequence: Indices 342058 -- 342557
CATGGAAATTTCCTGCCGGACACGGGGCTGTTGGTCCAATTAATTACACAATTCTTTATTAACGA
TATGGCTATAATAAATTAGACTCGATTTTTTTTTACTCTCTCTACACCTTCATTTGATCTTGTCC
AAAGCGAAAGGATTGAAAAAGACGATTCTTTCTCCACTGCTTTCTGACGAATGATTGATAGGAAC
GGATTGCCTGGGCTTCCCTGCATCCGATCGACTCATACCTCCCAGCCCTGTCTCCACGATCTCAT
TCAATAGATTCAACCCATTTCTAGGGTAGATAGAGGAGTTCGTCCCCCGCTTCCTTTGCTCCACT
GGCACCAAAGATCAAGAATTCGAGATAGAAAGAAAGATTGGTTGGTGGGCTGTTAAGCCCCCCTA
TCACTTAAAGGCAGATAGCGGAAAGGTGAGCAGCTATAGCTTCATGGTTCATCTTCCCCTCGCTA
CTGGATGAGTGAACTCTACCCGCCTATGCTGGATGGGATAGGATT
Found at i:352819 original size:3 final size:3
Alignment explanation
Indices: 352813--352862 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
352803 TTTGGAGGAG
* * *
352813 GAC GAC GAC GAC GAC GCC GAC GAC AAC GAC GAC AAC GAC GAC GAC GAC
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC
352861 GA
1 GA
352863 TAACGATGAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.36, C:0.34, G:0.30, T:0.00
Consensus pattern (3 bp):
GAC
Left flanking sequence: Indices 352313 -- 352812
ATACCTCTCTATTAAAGGAAACTCGAATACTTAATGCTTTATGCTTTACATTATAAAAAATGCCC
CTTGGTGTTCCAAAAGTACCCTTTGACTTTGACGTTGACTTTGACCGTCCCGAATACGAATACCG
CGAAGAAGACGAAGAGTCAACTTGGGTTGACTTATACAATGCACTTTATAAAAAGAGACAGTTGT
TTTTGTTTCAAGACGTTAATAGCGAGATAGCGAATCAACTTATCAACCTTTTTCTATATCTCGAT
TCAGAAAATGATATCACAGATTTTTGTCTTTATATAGACTCTCCCGGGGGATGGATACTCCCAGG
TATTAGTCTTTATAATGTTATGGAGGCTGTGGAGTCGGATATACGAACAATATGCGTCGGACTGG
CCGCTTCAATGGCATCTTTTATCCTGGCCGTGGGAAATCCTAACAAACGTGTAGCATTCCCTCAC
GCTGGGGTAATGATACATCAACCCCATGCTTCTTTTTTGGAGGAG
Right flanking sequence: Indices 352863 -- 353362
TAACGATGACAACAACGAAAACATCCAATTTTTGAGGGAAATGGACGAACTAATGATCATTCAGG
AAGACATCGCCAAAATTTATGCAGAAAGAACGAATCAACCTTTAGGGGTCATACTCAAAGACCTG
CAAAGCGATTCTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATTTTGTAGCACA
CTGGGAGCGACGAGTTAGAAAATAACTGGAATTTCATACAAATCGTGGTTGGGGTTGTTTCATAT
TTTATATTAACATTCTATTAATTTGAATAGAATGTTAATATAGAAATAATCCCTAATCCTCCGCA
TAATCATCCGGTTAGGAGCGACCTAAACCAACCCATTATGCATATGATTCATCATGCCAACTGTT
AAACAACTTATTAGGAAGGCAAGACAGCCAATCAGAAATGTCAACAAAACCCCCGCGCTTAGAGG
GTGTCCTCAGCGCCGAGGAATATGTACTCGGGTGTATGTGCGACT
Found at i:352868 original size:9 final size:9
Alignment explanation
Indices: 352813--352880 Score: 73
Period size: 9 Copynumber: 7.6 Consensus size: 9
352803 TTTGGAGGAG
*
352813 GACGACGAC
1 GACGACAAC
**
352822 GACGACGCC
1 GACGACAAC
352831 GACGACAAC
1 GACGACAAC
352840 GACGACAAC
1 GACGACAAC
*
352849 GACGACGAC
1 GACGACAAC
*
352858 GACGATAAC
1 GACGACAAC
*
352867 GATGACAAC
1 GACGACAAC
*
352876 AACGA
1 GACGA
352881 AAACATCCAA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.40, C:0.31, G:0.26, T:0.03
Consensus pattern (9 bp):
GACGACAAC
Left flanking sequence: Indices 352313 -- 352812
ATACCTCTCTATTAAAGGAAACTCGAATACTTAATGCTTTATGCTTTACATTATAAAAAATGCCC
CTTGGTGTTCCAAAAGTACCCTTTGACTTTGACGTTGACTTTGACCGTCCCGAATACGAATACCG
CGAAGAAGACGAAGAGTCAACTTGGGTTGACTTATACAATGCACTTTATAAAAAGAGACAGTTGT
TTTTGTTTCAAGACGTTAATAGCGAGATAGCGAATCAACTTATCAACCTTTTTCTATATCTCGAT
TCAGAAAATGATATCACAGATTTTTGTCTTTATATAGACTCTCCCGGGGGATGGATACTCCCAGG
TATTAGTCTTTATAATGTTATGGAGGCTGTGGAGTCGGATATACGAACAATATGCGTCGGACTGG
CCGCTTCAATGGCATCTTTTATCCTGGCCGTGGGAAATCCTAACAAACGTGTAGCATTCCCTCAC
GCTGGGGTAATGATACATCAACCCCATGCTTCTTTTTTGGAGGAG
Right flanking sequence: Indices 352881 -- 353380
AAACATCCAATTTTTGAGGGAAATGGACGAACTAATGATCATTCAGGAAGACATCGCCAAAATTT
ATGCAGAAAGAACGAATCAACCTTTAGGGGTCATACTCAAAGACCTGCAAAGCGATTCTTTTATG
TCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATTTTGTAGCACACTGGGAGCGACGAGTTAG
AAAATAACTGGAATTTCATACAAATCGTGGTTGGGGTTGTTTCATATTTTATATTAACATTCTAT
TAATTTGAATAGAATGTTAATATAGAAATAATCCCTAATCCTCCGCATAATCATCCGGTTAGGAG
CGACCTAAACCAACCCATTATGCATATGATTCATCATGCCAACTGTTAAACAACTTATTAGGAAG
GCAAGACAGCCAATCAGAAATGTCAACAAAACCCCCGCGCTTAGAGGGTGTCCTCAGCGCCGAGG
AATATGTACTCGGGTGTATGTGCGACTCGTTCGGATTGTGGATTG
Found at i:356755 original size:24 final size:24
Alignment explanation
Indices: 356710--356756 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
356700 ATCTGCCCTT
*
356710 AAAACTACTCAATTTTATTTAGAA
1 AAAACTACTCAATTTTAGTTAGAA
356734 AAAACTACTCAACTTTT-GTTAGA
1 AAAACTACTCAA-TTTTAGTTAGA
356757 TGATAGCCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.36
Consensus pattern (24 bp):
AAAACTACTCAATTTTAGTTAGAA
Left flanking sequence: Indices 356210 -- 356709
CTCAGCAATATCTTCCAGCAGAGCCCAAAATCGGCACGAATATGTTATTTTTTTCTTTGCTTTAG
CTGAATACTTTAAGTAGAAAAACTCGCTGAAGCTGGTGAGACGTTCGGTCTATTCACACAGGCAC
ACAGCCAGAGCAGGGATTTCTTTCTTGCAGAGAAAGATCGTCAGGGGCAGCCAGTTTCTTTCACT
AAATAGGAATGAAAGTATTCAACCGCCGGAAAGTGGGGTGGCCAGCTAGTCGGAATTAGACTTTC
CATTCAATTCGTGACACATGGCGAGATTCCTCTACCACCACTCTGTATAAATAGAGGCTTGATTT
GATAAGCTTTTGTGCTCTTACAAAAACAAAAAAACAAAAGTTTTCTACCTGTTTCTATCGAAAAG
CTATGGCCCTCCCTCTTGCAATCCAAAATTCCGATTCCGGTCGACTTTTTGAAATTGACCATCAA
CTTTTTCTTATTGACCTTGAAATACAAGTGTTAGAATCTGCCCTT
Right flanking sequence: Indices 356757 -- 357256
TGATAGCCAGAGGGGTCTTTCTTTCAACCATGTTCAAGAAAAAATGGAAAAAGACAGAAAAAAAA
TCCAGCAACTTGAAGAGGAACTCTCCGGCTTCCGGCAGGAACAGCGGAAACTACAGCAGGAGCAG
CGGGAACTTATCGTGAGGATAACCTGCCAAGAAAACCGGCGACTCTGACTCTTTTCGTTTTTTAT
TTTATAAGGTTAGGGTTTAAATTAAATAAGTGTCTGTAGACGCAAAGTAGTGTGTTTTAATTTAT
GGTGTTCTTTCTCTTTGTTTAGTGAAGATCTACTCCGGTGCTTACTGGAGATAGACTCCTAGTTA
ACTATCTTTGTTTGGTTTTATTTGTTATGTTTGCATGTATGGTATGGGAAAACCCCTTGTGTAAA
ATGTTTACTACTTAATGCTATGCTAATATATTAATTAATAAAGACTGCTCAAGATACATGACCGT
GTCGTCGTCATCATACTGTTGACTGAGATCTTCAGCCATGCGCTG
Found at i:364223 original size:18 final size:19
Alignment explanation
Indices: 364200--364236 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
364190 CTCTCCCTTA
364200 CGGTCGAG-TCTGCAAACC
1 CGGTCGAGTTCTGCAAACC
364218 CGGTCGAGTTCTGCAAACC
1 CGGTCGAGTTCTGCAAACC
364237 TCTCGTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (19 bp):
CGGTCGAGTTCTGCAAACC
Left flanking sequence: Indices 363700 -- 364199
AGCTCTTTGATAGTGACTTCTTTCGTTTGGTAGGGCGATGAAAGGCTACTTCAATCTAGGAAACA
GCCGGAAACTCGAAAGGGTCGCCTTTGGAAGCGTTCGTCGGTAACCAAAGCGTTTCGTTTCCGCC
TTTGGTACTTTGCTTATAGCTTTTTTAGCTTATGCAATAGAAGGGGCTTAGCTCTGGATCCCCCC
CTGCTTTCAGAAATGAATAGATCAGAAAGAGGCTGGGTTCTATTTCCGGGCCGGGCGGGAGGTGA
AGGCCATAAGAGAAGATTGCCCTCCCGGTAAGGAAGAGAGGAAAAAGACGCTGTCATCTATCTCG
ACCAGTTTCCTGAGGCGTTGGAAATCCAGACCGGCTCAGAGAATCACTTAGCCGAAGGCGCCCTT
CGTTTCGCCAACAAAGAAGTTCTCTTTTACAATTTCCCATTCCTTCCCTGCTCTCCCCTCCTCTC
CCTTACGGTCGAGCCGCTAACGCCCCCCTTTCTCCCTCTCCCTTA
Right flanking sequence: Indices 364237 -- 364736
TCTCGTTGCACTCGAGTGACCGCTGCGCCCCTCTCTTCGCCATTCGAAGTACTACCTCTGCCTTC
CCTTTCTATAACATACCCCGGCGCCCTCCTTTCCAATCACTAAGAAAAAAGAAATACCAATCAAA
GCAGCTTTACGACGCCCTATCTAAGTAAAGCTTCGTTTGTTCTTTTTCCGGCCCCGGGGGAGTTT
ACTCGACCCATTCCCCAGTCTCCCGCACTGCTCAAGTCAGTGTGCGACTCCGTATGAGGACCTCC
TTTCCTTCTGCCCACTCTCCGTTCACACGGTTCTCAAAGCAGAGGAGGAAGGGTGGGAAGAAGGT
ACCACAAACCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATG
CTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGAATGCTTCGCCATAGAATA
GATCGACCCAGTTCCTGTTCTTTTTCGGTGCACTCGCTTTATATC
Found at i:370676 original size:33 final size:33
Alignment explanation
Indices: 370626--370713 Score: 151
Period size: 33 Copynumber: 2.7 Consensus size: 33
370616 GAGGTTAGCG
*
370626 GGGCTCTACCGTA-AGGGAGAGGGTCGCGTCAGC
1 GGGCTCGACC-TACAGGGAGAGGGTCGCGTCAGC
370659 GGGCTCGACCTACAGGGAGAGGGTCGCGTCAGC
1 GGGCTCGACCTACAGGGAGAGGGTCGCGTCAGC
370692 GGGCTCGACCTACAGGGAGAGG
1 GGGCTCGACCTACAGGGAGAGG
370714 AGGGAAGCGA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
32 2 0.04
33 51 0.96
ACGTcount: A:0.19, C:0.25, G:0.43, T:0.12
Consensus pattern (33 bp):
GGGCTCGACCTACAGGGAGAGGGTCGCGTCAGC
Left flanking sequence: Indices 370126 -- 370625
ACAGCTTACTTCGATGTTTCATAGATTGAGTCTTTTCTTTCTTTTCATTTTGACCTTTCTCAGTT
TGTCTCTGTTTACTAATCAAGGTGGGTTTTGATCTCTTTCTTTTGAAAATGCAATCAATGATGCT
AGGGAAAGTGATGTCTTTATTATTACAGAAGGTCGCATGGGAAGGGAGGCTTTTGATAGAACTTT
TTCTTTTTTGTGGAGGCCTCACTCTAGGGAACATGATGATGTCAGAAGAAGGTTACGCTGCATCA
AGCTCGGAGGGGGGCGGTGCAAGCCCTTCGAAACGACCTCCTCTCGACATCGGCTTCAATGCCCC
TGCCCCGGAGCAGGAGCCCGCCCCTCCGTTGGAACTAAATCGAGTAACGGATGAGATACGGAGGT
TCTGGAAGAAATTGAGGAGTTGGAGCAAGAACGTCAAAGAATCGTCGAAGCTTCTGCCCAACAGG
AGGAGAGAAGGGTTGAAGAGCTCGACCGATAGGGAGAGGTTAGCG
Right flanking sequence: Indices 370714 -- 371213
AGGGAAGCGACTGAAAGGAGAGGGGCGTAGCGGCGAGGGAAAACCGGATTTCAATACAAAAGGTT
CTCCTTTTGGTTGCGATGATTTATTTTGTTTTTGTTCAAAGCGAAGCGAGCGGTGTTATTGTCCC
CTTCCTTCTCCTAGCGCTTAGACATCGTATGCAGATCATCGGGATCGGTAATATCATATAATCAA
TTCTTTGATCCGTGAACTCCACCCTTGGCTTACCCAATATTGGCCAGGGAATGGACCAATTCCTT
CAAAAAGGCATATGGATTGAGAATCTATGCAGGAGATCGGGTCGCGAACCTTCTCTTCTCTCAGG
TCCAGAGGGGAACTTTGTTAGGTCCCTCAGGATGCATATTCGGTAACAGGAAGTCGGTATTCGAG
CCATGTATGTGGCACACAACAGGTTCTATCGATACGAATAAGAAAATCTTTTTTTTTTTTTCTTC
GGAATCAAGCGGAAAATAATGGAGTGGGGAGCTCTGACGTGCCAT
Found at i:380223 original size:44 final size:44
Alignment explanation
Indices: 380160--380284 Score: 241
Period size: 44 Copynumber: 2.8 Consensus size: 44
380150 AGATGAAAAG
*
380160 AATCCTTTTCTTTTCATAAGTTGAATCTATAACATAAAACGAGC
1 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAAAACGAGC
380204 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAAAACGAGC
1 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAAAACGAGC
380248 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAA
1 AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAA
380285 TAGACTCGAA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
44 80 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.37
Consensus pattern (44 bp):
AATCCTTTTCTTTTCATAAGTTGAATCAATAACATAAAACGAGC
Left flanking sequence: Indices 379660 -- 380159
AACGCAGAATCCGTCGCAGCCTTTCGGCTAGCATTTTACTAATATAATCGAATCGCTCCTCAACC
CATTTGACTTTTTGAAGTACTAGGCGCTTCGCTTACTTATTTAAGCTGACAGACGAATTACGTAC
TTGAACTTTAAGGAATACGGGATTACAACCAAAAGAAAGTCAAATCAGGACTTTCTTGATGGGAG
GGACGCGTCAGCGGGCTCGACTGTAAGGAGAGGAGCGGGGACATCTCAAAGTAGCCTAGGGGCAT
AAAAGTTTGGAAGGGAATTGCACAGGAATGCTAGACTCAGTCCAAGCACGAGAATGCCAAGAAAC
TGTAATGGTAGCTCAACCAAGGACTCTGAAAGCACTTTTTCCAGCATGAAGAAGGGAATTCAATT
ATATTATCATGAAGAAGGGAATTCCCGTATTGTATTAAGGGAATTTCATTATTTTTTGCTTCTAA
ATGCACCCAAAACTAAACAAAAAGAGCGGGGGGGAAGATGAAAAG
Right flanking sequence: Indices 380285 -- 380784
TAGACTCGAAAAGTGACTAAAAAGCGTGATGAGAATTCTCAACTCAAAATAAATGTTAGAAGGTG
CAAAATTAATGGGTGCCGGGGCTGCTACAATTGCTTCAGCGGGAGCAGCATGGTCCTTGGATTTG
CCTGACTTTCTTTCTTCTGCCCTGTTTTCAGTCATCTATTATTCACTTGTATATGTATATATTTA
TATAGATATGAAGTGTTCAGTCTATGCCCGAACGATTGAATTTTTTCATGATTTTATGGTCAAGG
AGAAAGAGTCTATCGATTTCTTCCATAAACTAGGTTTCCTAATTTCGTGTTTTTTGTTATTTTTT
TTTAGTTATAATTTTTATTTGTCACTTGATGAAAATCATGATAATTTGAATTTGGTTAACCCACT
TCAGGTTGTTGCCCAACTATGCTGCTTTTTATTTTATTTTAAGTCTAAAAGAAGTGATGTCAGGG
AAAGGCACCTAATTCTTCTTTGCTTTATTTTTAGCATAATGGGTA
Found at i:386401 original size:22 final size:21
Alignment explanation
Indices: 386376--386423 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
386366 GAGCTATATA
*
386376 TTATATGAAAGGGAGAGAAAAC
1 TTAT-TGAAAGAGAGAGAAAAC
*
386398 TTATTTAAAGAGAGAGAAAAC
1 TTATTGAAAGAGAGAGAAAAC
386419 TTATT
1 TTATT
386424 TCGATTCTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.48, C:0.04, G:0.21, T:0.27
Consensus pattern (21 bp):
TTATTGAAAGAGAGAGAAAAC
Left flanking sequence: Indices 385876 -- 386375
AGTCGATGGCTATTCATAGCCATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTATTTC
TGTCCTAGTTGATCCTGATTCGACATTAAAAGTATATTGATTTTTCCCCAATAACCGAATACTTT
TGTCTGTAAATACTGCATATTGGATTCCATCCATAAATCGATTTTCTTCCCTATGAGTTCGAGTC
TCAATAAGAATGCTAGTTCTTACTGTTCATATGTTATGATATGAATATACCACACCAATTCGTTA
TGTATGGATGATGAGATTCCATTGATACAGAGCCAATTCCAATAGACTTATTGGAGGGTCCCATT
GGTGTGCATCCAGTAGGAATTGAACCTACGAATTCGCCAATTATGAGTTGGGTGCTTTAACCATT
CAGCCATGGACGCTTAGCGGGGATCCTCATATATCGTAGATAAACAAAGTCGAAATGGAAATGAA
ATCTTTAGTTCTGTTTGAATCAATCCAATTTATAGGAGCTATATA
Right flanking sequence: Indices 386424 -- 386923
TCGATTCTGGATTTTCGAATTGAGAGAGATCAAGAATTCTCACTATTTAATAGATTCATGGACCA
AATTCAATTCAGTGGGATCTTTCATTAACATTTTTTTCCATCAAGAACGTTTTGTAAAACTCTTG
GACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGATTTCACGACCAAGGGTGTAGT
ACTATTCAAGGGTGTAGTACTATTTGTAGTAGTGGTCCTTCTATACCGTATCAACAATCGAAAGA
TGGTCGAAAGAAAAAATCTCTATTTGACAGGGCTTCTTCCTATACCTATGAATTCCATTGGACCC
AGAAATGATACATTGGAAGAATCCTTTGTGTCTTCCAATATCAATAGGTTGATTGTTTCACTCCT
TTATCTTCCAAAAGGAAAAAAGATCTCGGAGAGCAGTTTCCTGGATCCGAAAGAGAGAGACTCAA
TCCGTTACCATGACTGATAGGATGATCAAACAAGGATGAAAAGCT
Found at i:386412 original size:21 final size:21
Alignment explanation
Indices: 386383--386424 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
386373 ATATTATATG
*
386383 AAAGGGAGAGAAAACTTATTT
1 AAAGAGAGAGAAAACTTATTT
386404 AAAGAGAGAGAAAACTTATTT
1 AAAGAGAGAGAAAACTTATTT
386425 CGATTCTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.21, T:0.24
Consensus pattern (21 bp):
AAAGAGAGAGAAAACTTATTT
Left flanking sequence: Indices 385883 -- 386382
GGCTATTCATAGCCATTACCTTGACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCCTA
GTTGATCCTGATTCGACATTAAAAGTATATTGATTTTTCCCCAATAACCGAATACTTTTGTCTGT
AAATACTGCATATTGGATTCCATCCATAAATCGATTTTCTTCCCTATGAGTTCGAGTCTCAATAA
GAATGCTAGTTCTTACTGTTCATATGTTATGATATGAATATACCACACCAATTCGTTATGTATGG
ATGATGAGATTCCATTGATACAGAGCCAATTCCAATAGACTTATTGGAGGGTCCCATTGGTGTGC
ATCCAGTAGGAATTGAACCTACGAATTCGCCAATTATGAGTTGGGTGCTTTAACCATTCAGCCAT
GGACGCTTAGCGGGGATCCTCATATATCGTAGATAAACAAAGTCGAAATGGAAATGAAATCTTTA
GTTCTGTTTGAATCAATCCAATTTATAGGAGCTATATATTATATG
Right flanking sequence: Indices 386425 -- 386924
CGATTCTGGATTTTCGAATTGAGAGAGATCAAGAATTCTCACTATTTAATAGATTCATGGACCAA
ATTCAATTCAGTGGGATCTTTCATTAACATTTTTTTCCATCAAGAACGTTTTGTAAAACTCTTGG
ACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGATTTCACGACCAAGGGTGTAGTA
CTATTCAAGGGTGTAGTACTATTTGTAGTAGTGGTCCTTCTATACCGTATCAACAATCGAAAGAT
GGTCGAAAGAAAAAATCTCTATTTGACAGGGCTTCTTCCTATACCTATGAATTCCATTGGACCCA
GAAATGATACATTGGAAGAATCCTTTGTGTCTTCCAATATCAATAGGTTGATTGTTTCACTCCTT
TATCTTCCAAAAGGAAAAAAGATCTCGGAGAGCAGTTTCCTGGATCCGAAAGAGAGAGACTCAAT
CCGTTACCATGACTGATAGGATGATCAAACAAGGATGAAAAGCTC
Found at i:386630 original size:18 final size:18
Alignment explanation
Indices: 386607--386642 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
386597 ATTTCACGAC
386607 CAAGGGTGTAGTACTATT
1 CAAGGGTGTAGTACTATT
386625 CAAGGGTGTAGTACTATT
1 CAAGGGTGTAGTACTATT
386643 TGTAGTAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (18 bp):
CAAGGGTGTAGTACTATT
Left flanking sequence: Indices 386107 -- 386606
TGATATGAATATACCACACCAATTCGTTATGTATGGATGATGAGATTCCATTGATACAGAGCCAA
TTCCAATAGACTTATTGGAGGGTCCCATTGGTGTGCATCCAGTAGGAATTGAACCTACGAATTCG
CCAATTATGAGTTGGGTGCTTTAACCATTCAGCCATGGACGCTTAGCGGGGATCCTCATATATCG
TAGATAAACAAAGTCGAAATGGAAATGAAATCTTTAGTTCTGTTTGAATCAATCCAATTTATAGG
AGCTATATATTATATGAAAGGGAGAGAAAACTTATTTAAAGAGAGAGAAAACTTATTTCGATTCT
GGATTTTCGAATTGAGAGAGATCAAGAATTCTCACTATTTAATAGATTCATGGACCAAATTCAAT
TCAGTGGGATCTTTCATTAACATTTTTTTCCATCAAGAACGTTTTGTAAAACTCTTGGACTCCCG
AATTTGGAGTATCCTACTTTCACGCAATTCACAGGATTTCACGAC
Right flanking sequence: Indices 386643 -- 387142
TGTAGTAGTGGTCCTTCTATACCGTATCAACAATCGAAAGATGGTCGAAAGAAAAAATCTCTATT
TGACAGGGCTTCTTCCTATACCTATGAATTCCATTGGACCCAGAAATGATACATTGGAAGAATCC
TTTGTGTCTTCCAATATCAATAGGTTGATTGTTTCACTCCTTTATCTTCCAAAAGGAAAAAAGAT
CTCGGAGAGCAGTTTCCTGGATCCGAAAGAGAGAGACTCAATCCGTTACCATGACTGATAGGATG
ATCAAACAAGGATGAAAAGCTCTATTCAAATTCAATAGAGCCGCTTCTCCTGTTAGTTAGAGAAG
AGGGGAAAACATCCTATCTTGTTGGTTCTTCTTCTTTCGAATCTTAACCATGAAAGTCAGTCAAT
GTTGGCTTCCTCGATTACACAGTTGACCACACGCATTCAACGGTAGGGAGTCAGACCTTCTACAA
TTTTATACAACAATTCAGGGGATACTCATCAAGTGGACCATCCCA
Found at i:390583 original size:25 final size:25
Alignment explanation
Indices: 390549--390597 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
390539 GCAATCCCCT
*
390549 CCTCTCCCTTACGGTCGAGCCCGCC
1 CCTCTACCTTACGGTCGAGCCCGCC
390574 CCTCTACCTTACGGTCGAGCCCGC
1 CCTCTACCTTACGGTCGAGCCCGC
390598 TGACGCGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.10, C:0.49, G:0.20, T:0.20
Consensus pattern (25 bp):
CCTCTACCTTACGGTCGAGCCCGCC
Left flanking sequence: Indices 390049 -- 390548
CCTCTTCCAGGGTTCATTCTATAGCTACTTAGGATCCGATCTATAGCGCGCCACCCTTTATTTAT
TACTAGGTTGGGCTACCAGCAGCGGTCTGCCCTTGCACTGAACATCTACATCAAAATGGTGAGTG
GTTAGGTATGTGATCATCGATCGGCCTCACATTTCTTTCTCGGGCGCAGTAAAGTAAAAAGAGAT
AGGGGTTCTAGATAAATAGACAAAGAAGTTCAGCTGCCCTTAGTTAGAAAATAGGATCCTATCCC
TCTTTATCAGAAATGGAGCAGTCATCCGCCTAACGAGAAAACGAAAGGGGCCTCGCCTATTATTG
GGATTAAATGAAAAAAGGCTTTGTGGTTGTCACGAGCTGGATTCGAACCAGCGCTTCCCAGATCC
AATCCGGATTTCAACCTTTCTGATCGTGACTTAAAAAGAAAGAAGAGAAGAGAAAGAACTGGGAG
TTGGCGCCTGCTTGCTTGCTTACCAAGCGATCCTGGCAATCCCCT
Right flanking sequence: Indices 390598 -- 391097
TGACGCGACCCTCTACCTTATGGTAGAGCCCCGCCTCCATCTCTCTCCCTATCGGTCGAGTCTTC
AAACCCGGTCGAGCCCCGCTAACGCGCCTCCAGTTCGATTATTATTCTTGACTTGACTTATTATT
ATAAAAACTACTCACTATCAAAATGAAAGACAATCGATTATCTACCCAAGAAGATAGAGAGTCCC
ACATACGAGAAAAGGTCACAAATAGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAG
GGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAAGGTCTCCCCTCATCCGGCTCTCTGCAGGG
GAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCATATCATGGGGGTTTACAGGAGAT
CCCAGAGGCTCGCTCGGAAGGCTGCTATACCATACCTTTTGACTCAATTCTACTCTAGTAGTCAC
TAGACTGACTATAGTAGTCCGTCCGGCTGCTCTTGCTGAAATCAT
Found at i:393469 original size:32 final size:32
Alignment explanation
Indices: 393399--393470 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
393389 AGCTCGGCGA
*
393399 CCCTCTCCCTATCGGTCGAGCCCCGCCTCCGT
1 CCCTCTCCCTATCGGTCGAGCCCCGCCTCCGC
* * *
393431 CTCTCTCCCTATCGGTCGAGTCTCCG-CTGCGC
1 CCCTCTCCCTATCGGTCGAG-CCCCGCCTCCGC
393463 CCCTCTCC
1 CCCTCTCC
393471 TTCCAGTCGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 30 0.88
33 4 0.12
ACGTcount: A:0.06, C:0.51, G:0.18, T:0.25
Consensus pattern (32 bp):
CCCTCTCCCTATCGGTCGAGCCCCGCCTCCGC
Left flanking sequence: Indices 392899 -- 393398
CTACTTCATGGAATGAAAGGGGCCTCCCAGTCAAGTAAAGGCGGCCGAAGGAACCGCCTGCCTAG
CAACATCTTTTCTGGGTAAGTTACTCTCCTTTTCCGGAGAAAGAAAAAGAAAGAGCCCTTCTTCG
GATTCGAACCGATTAAGCCTCTTTCTTAGGGCTTCAAGAGCGTGACTCTTCTTTATATACACAAT
TTTAAGTCTAGTTTGCCACAAGGACAAGGCATGCAAGCGAGGAGGGCTAGCTTTATTTAAGAGAG
AATAGGGAGTCAAGCTGCACGCAATCCACAAACAAAAGACAAAAGCCACTCACACTCACGGGACA
ACGACTATATTCCACAACTCCTGCAAGAGACGATTCTATAACAGACGATTCGTTGATAACATCTG
AAGACGATCCTACTAAGAGGGGCCTTTCGCCGGTTCTTGGAATGGGCCGCCTCCGTCCCTCTCCC
TATCTTAGCTGACGCGACCCTCTACCTTACGGTAGAGCTCGGCGA
Right flanking sequence: Indices 393471 -- 393970
TTCCAGTCGAGTGGCTTTTTCGCTCCAATCCTTCTCTTCCACGCCACGGGTTAGGTAGGTCTCTC
CTTATGCTCTAAGGGTTGACTTTGCATGATTACAAAAGGCCTCCAATCCCGGGCTTTCCTAAAAC
CATAGGTCTAGTTCCGGCTCACTCAAACTTCAGCTTCAATCTTGAAATGAAATTAGGGCTGTAAG
AGCTAACCACAAAAGTCCGAGCATCAGGTAATTATGAAACAAGAACAGAAGACCTTATGATTCAA
TTGTATTATTAATATCTTAACGTGAACATCATATACATATAGTCTATGATGACTACTAGAAGAAG
AGTATCCAAAAGGGATTTGAAATTACTGGGTCGTAGGGCTTATCGTTTCAAAGTCAATTTCTCTT
TCTCCTGAACTCAAAGTTGTTGGGAAAAGGATAAACTGACTCCCTCATTCCTTATAACTAAGCCA
ATCTCTAAATGCTATACCATATGCTTAGCCGCTGCACTCGTCAAA
Found at i:410163 original size:31 final size:33
Alignment explanation
Indices: 410092--410167 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 33
410082 AAGAACCAAG
* *
410092 GAGGGGCGCAGCGGTCACTCGACCGTAAGGGAT
1 GAGGGGCGCAGCGGTCACTCGACCGCAAGCGAT
**
410125 GAGGGGCGCAGCGGTCACTCGAGTGCAA-CGA-
1 GAGGGGCGCAGCGGTCACTCGACCGCAAGCGAT
410156 GAGGGGCGCAGC
1 GAGGGGCGCAGC
410168 TCCGGCGACC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 12 0.31
32 2 0.05
33 25 0.64
ACGTcount: A:0.21, C:0.25, G:0.45, T:0.09
Consensus pattern (33 bp):
GAGGGGCGCAGCGGTCACTCGACCGCAAGCGAT
Left flanking sequence: Indices 409592 -- 410091
CACGCGCTCTAAGCCCGGCCCGCGCGCGGTTAGGAAGATTGGCCGCAATCTGAGCGGTACCACCC
TACCCTACCATCTATAGGCGGCCGTCCGTCCTACAGCCGCCCGAAAAGGAACTGCAGTGATCTTG
AATAGGAATCCTACAGCGAGAAAAATCATCCCCATAAAAATACCACTAGATCGAGCACCAGCGAT
TTCGTATCCGGTCAAAATCTTGGCTAATTGATCGAAGTGGGTAGCTCCAGTAGACCCATAGATCA
TGGAACAAATAGGGTGGGTAGGCCCAACCACCACACTACACGTATAGACGCGAACCCCCCTCGTT
ACCGTACGTGCGACTCTCACCGCATACGGCTCGCACAAAGACTCCTAAATCTATCCCGAGCCTTT
TCTTCCACCTCTCCTCTCCAATCCTCGATCAAACTTGGGTTCCCCAGACGCTATTAAATTAAATG
GGGGTCTTTCCTTCGCCTATCGTATGTATCGGCTTAAGAACCAAG
Right flanking sequence: Indices 410168 -- 410667
TCCGGCGACCGTAAGGGAGAGGTTTGGAGACGCTCAACTGATAGGTAGAGGGGCGCAGCGGACTC
GACCGGGTTTGCAGAACTCGACCGATAGGGAGAGGGTCGCGTCAGCGGGCTCGACTGTAAGGAGA
GGGAGAGGGCGGTCACTCGACCGATAGGGAGAGGGTCGCGTCAGCGGGCTCGACTGTAAGGAGAG
GGAGAGGGCGGTCACTCGACCGTAAGGGAGAGGAGGGGACCACTCGCTTTTAAGTCTTTAGCAGA
TCAAGGGGAGAGGAGCGAAAGAACGACGAGCTATAATAGGAAAAGGATATAGAAAAGGAAAGGTA
TCCCCCATTGAAGAAGCTGGTTGTTTTTCGGGTGGATTGCTTTGAATAGCTATCTTTCGTACCCT
TGCGATTCTACTTTCCTTCTTTGATGGAAAGAATGCGTTGGTATAGAATCTAGCAGCAGTTCTGA
GCTGTGCCCGCGCCCTTTCTTCGTCCAAGAAGTCTAGATATTCCC
Found at i:410298 original size:32 final size:32
Alignment explanation
Indices: 410261--410364 Score: 106
Period size: 32 Copynumber: 3.2 Consensus size: 32
410251 CGACCGATAG
410261 GGAGAGGGTCGCGTCAGCGGGCTCGACTGTAA
1 GGAGAGGGTCGCGTCAGCGGGCTCGACTGTAA
* * * * * *
410293 GGAGAGGG-AGAG--GGCGGTCACTCGACCGATAG
1 GGAGAGGGTCGCGTCAGCGG--GCTCGACTG-TAA
410325 GGAGAGGGTCGCGTCAGCGGGCTCGACTGTAA
1 GGAGAGGGTCGCGTCAGCGGGCTCGACTGTAA
410357 GGAGAGGG
1 GGAGAGGG
410365 AGAGGGCGGT
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
29 4 0.07
31 9 0.17
32 28 0.52
33 9 0.17
35 4 0.07
ACGTcount: A:0.21, C:0.19, G:0.47, T:0.12
Consensus pattern (32 bp):
GGAGAGGGTCGCGTCAGCGGGCTCGACTGTAA
Left flanking sequence: Indices 409761 -- 410260
ATACCACTAGATCGAGCACCAGCGATTTCGTATCCGGTCAAAATCTTGGCTAATTGATCGAAGTG
GGTAGCTCCAGTAGACCCATAGATCATGGAACAAATAGGGTGGGTAGGCCCAACCACCACACTAC
ACGTATAGACGCGAACCCCCCTCGTTACCGTACGTGCGACTCTCACCGCATACGGCTCGCACAAA
GACTCCTAAATCTATCCCGAGCCTTTTCTTCCACCTCTCCTCTCCAATCCTCGATCAAACTTGGG
TTCCCCAGACGCTATTAAATTAAATGGGGGTCTTTCCTTCGCCTATCGTATGTATCGGCTTAAGA
ACCAAGGAGGGGCGCAGCGGTCACTCGACCGTAAGGGATGAGGGGCGCAGCGGTCACTCGAGTGC
AACGAGAGGGGCGCAGCTCCGGCGACCGTAAGGGAGAGGTTTGGAGACGCTCAACTGATAGGTAG
AGGGGCGCAGCGGACTCGACCGGGTTTGCAGAACTCGACCGATAG
Right flanking sequence: Indices 410365 -- 410864
AGAGGGCGGTCACTCGACCGTAAGGGAGAGGAGGGGACCACTCGCTTTTAAGTCTTTAGCAGATC
AAGGGGAGAGGAGCGAAAGAACGACGAGCTATAATAGGAAAAGGATATAGAAAAGGAAAGGTATC
CCCCATTGAAGAAGCTGGTTGTTTTTCGGGTGGATTGCTTTGAATAGCTATCTTTCGTACCCTTG
CGATTCTACTTTCCTTCTTTGATGGAAAGAATGCGTTGGTATAGAATCTAGCAGCAGTTCTGAGC
TGTGCCCGCGCCCTTTCTTCGTCCAAGAAGTCTAGATATTCCCTCAGAAGCTGCTCGTTCTGGAA
TTTCGGAATCTGTCCACCTTCTTCTCGAACAAAAACGGAACTGATCGCTGCAGGGATTGCAGCCA
GATACAAGTATAGTCTTTCCCCTGTCTTTGGTTTAGTAAGGCCGGGTGGCGAACTCAAGTACTTC
TTTCAATTCGTCGAAACAATCATCGACCCACTCGAACTTCCTTCT
Found at i:410327 original size:64 final size:64
Alignment explanation
Indices: 410248--410395 Score: 280
Period size: 64 Copynumber: 2.3 Consensus size: 64
410238 GGTTTGCAGA
410248 ACTCGACCGATAGGGAGAGGGTCGCGTCAGCGGGCTCGACTGTAAGGAGAGGGAGAGGGCGGTC
1 ACTCGACCGATAGGGAGAGGGTCGCGTCAGCGGGCTCGACTGTAAGGAGAGGGAGAGGGCGGTC
410312 ACTCGACCGATAGGGAGAGGGTCGCGTCAGCGGGCTCGACTGTAAGGAGAGGGAGAGGGCGGTC
1 ACTCGACCGATAGGGAGAGGGTCGCGTCAGCGGGCTCGACTGTAAGGAGAGGGAGAGGGCGGTC
410376 ACTCGACCG-TAAGGGAGAGG
1 ACTCGACCGAT-AGGGAGAGG
410396 AGGGGACCAC
Statistics
Matches: 83, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
63 1 0.01
64 82 0.99
ACGTcount: A:0.23, C:0.20, G:0.45, T:0.12
Consensus pattern (64 bp):
ACTCGACCGATAGGGAGAGGGTCGCGTCAGCGGGCTCGACTGTAAGGAGAGGGAGAGGGCGGTC
Left flanking sequence: Indices 409748 -- 410247
CATCCCCATAAAAATACCACTAGATCGAGCACCAGCGATTTCGTATCCGGTCAAAATCTTGGCTA
ATTGATCGAAGTGGGTAGCTCCAGTAGACCCATAGATCATGGAACAAATAGGGTGGGTAGGCCCA
ACCACCACACTACACGTATAGACGCGAACCCCCCTCGTTACCGTACGTGCGACTCTCACCGCATA
CGGCTCGCACAAAGACTCCTAAATCTATCCCGAGCCTTTTCTTCCACCTCTCCTCTCCAATCCTC
GATCAAACTTGGGTTCCCCAGACGCTATTAAATTAAATGGGGGTCTTTCCTTCGCCTATCGTATG
TATCGGCTTAAGAACCAAGGAGGGGCGCAGCGGTCACTCGACCGTAAGGGATGAGGGGCGCAGCG
GTCACTCGAGTGCAACGAGAGGGGCGCAGCTCCGGCGACCGTAAGGGAGAGGTTTGGAGACGCTC
AACTGATAGGTAGAGGGGCGCAGCGGACTCGACCGGGTTTGCAGA
Right flanking sequence: Indices 410396 -- 410895
AGGGGACCACTCGCTTTTAAGTCTTTAGCAGATCAAGGGGAGAGGAGCGAAAGAACGACGAGCTA
TAATAGGAAAAGGATATAGAAAAGGAAAGGTATCCCCCATTGAAGAAGCTGGTTGTTTTTCGGGT
GGATTGCTTTGAATAGCTATCTTTCGTACCCTTGCGATTCTACTTTCCTTCTTTGATGGAAAGAA
TGCGTTGGTATAGAATCTAGCAGCAGTTCTGAGCTGTGCCCGCGCCCTTTCTTCGTCCAAGAAGT
CTAGATATTCCCTCAGAAGCTGCTCGTTCTGGAATTTCGGAATCTGTCCACCTTCTTCTCGAACA
AAAACGGAACTGATCGCTGCAGGGATTGCAGCCAGATACAAGTATAGTCTTTCCCCTGTCTTTGG
TTTAGTAAGGCCGGGTGGCGAACTCAAGTACTTCTTTCAATTCGTCGAAACAATCATCGACCCAC
TCGAACTTCCTTCTTATTTATTACTGCGAAGCGTCTTAAACTTAA
Found at i:410393 original size:32 final size:31
Alignment explanation
Indices: 410282--410395 Score: 106
Period size: 32 Copynumber: 3.6 Consensus size: 31
410272 CGTCAGCGGG
*
410282 CTCGACTGTAAGGAGAGGGAGAGGGCGGTCA
1 CTCGACCGTAAGGAGAGGGAGAGGGCGGTCA
* * * * *
410313 CTCGACCGATAGGGAGAGGGTCGCGTCAGCGG--G
1 CTCGACCG-TAAGGAGAGGG-AGAG--GGCGGTCA
*
410346 CTCGACTGTAAGGAGAGGGAGAGGGCGGTCA
1 CTCGACCGTAAGGAGAGGGAGAGGGCGGTCA
410377 CTCGACCGTAAGGGAGAGG
1 CTCGACCGTAA-GGAGAGG
410396 AGGGGACCAC
Statistics
Matches: 63, Mismatches: 13, Indels: 13
0.71 0.15 0.15
Matches are distributed among these distances:
29 4 0.06
31 19 0.30
32 27 0.43
33 9 0.14
35 4 0.06
ACGTcount: A:0.24, C:0.19, G:0.45, T:0.12
Consensus pattern (31 bp):
CTCGACCGTAAGGAGAGGGAGAGGGCGGTCA
Left flanking sequence: Indices 409782 -- 410281
GCGATTTCGTATCCGGTCAAAATCTTGGCTAATTGATCGAAGTGGGTAGCTCCAGTAGACCCATA
GATCATGGAACAAATAGGGTGGGTAGGCCCAACCACCACACTACACGTATAGACGCGAACCCCCC
TCGTTACCGTACGTGCGACTCTCACCGCATACGGCTCGCACAAAGACTCCTAAATCTATCCCGAG
CCTTTTCTTCCACCTCTCCTCTCCAATCCTCGATCAAACTTGGGTTCCCCAGACGCTATTAAATT
AAATGGGGGTCTTTCCTTCGCCTATCGTATGTATCGGCTTAAGAACCAAGGAGGGGCGCAGCGGT
CACTCGACCGTAAGGGATGAGGGGCGCAGCGGTCACTCGAGTGCAACGAGAGGGGCGCAGCTCCG
GCGACCGTAAGGGAGAGGTTTGGAGACGCTCAACTGATAGGTAGAGGGGCGCAGCGGACTCGACC
GGGTTTGCAGAACTCGACCGATAGGGAGAGGGTCGCGTCAGCGGG
Right flanking sequence: Indices 410396 -- 410895
AGGGGACCACTCGCTTTTAAGTCTTTAGCAGATCAAGGGGAGAGGAGCGAAAGAACGACGAGCTA
TAATAGGAAAAGGATATAGAAAAGGAAAGGTATCCCCCATTGAAGAAGCTGGTTGTTTTTCGGGT
GGATTGCTTTGAATAGCTATCTTTCGTACCCTTGCGATTCTACTTTCCTTCTTTGATGGAAAGAA
TGCGTTGGTATAGAATCTAGCAGCAGTTCTGAGCTGTGCCCGCGCCCTTTCTTCGTCCAAGAAGT
CTAGATATTCCCTCAGAAGCTGCTCGTTCTGGAATTTCGGAATCTGTCCACCTTCTTCTCGAACA
AAAACGGAACTGATCGCTGCAGGGATTGCAGCCAGATACAAGTATAGTCTTTCCCCTGTCTTTGG
TTTAGTAAGGCCGGGTGGCGAACTCAAGTACTTCTTTCAATTCGTCGAAACAATCATCGACCCAC
TCGAACTTCCTTCTTATTTATTACTGCGAAGCGTCTTAAACTTAA
Found at i:416736 original size:32 final size:32
Alignment explanation
Indices: 416687--416777 Score: 164
Period size: 32 Copynumber: 2.8 Consensus size: 32
416677 CAGCTAAGAT
* *
416687 AGGGAGAGGGGCACAGCGGTCACTCGACTGGA
1 AGGGAGAGAGGCGCAGCGGTCACTCGACTGGA
416719 AGGGAGAGAGGCGCAGCGGTCACTCGACTGGA
1 AGGGAGAGAGGCGCAGCGGTCACTCGACTGGA
416751 AGGGAGAGAGGCGCAGCGGTCACTCGA
1 AGGGAGAGAGGCGCAGCGGTCACTCGA
416778 GTGCAACGAG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 57 1.00
ACGTcount: A:0.25, C:0.22, G:0.44, T:0.09
Consensus pattern (32 bp):
AGGGAGAGAGGCGCAGCGGTCACTCGACTGGA
Left flanking sequence: Indices 416187 -- 416686
GAAACTGTTCGGTTCCTATCTACCGTTGGTGTGAAAGGCCATCGCTGCAAACAAAGATATAAAGC
AAGACAGAGTCGTCAATTATAGAGACCATCGGTGCATACCCTCCCAAAGTGTCTCCCTTCCCTAT
CGTTCGTATAATTCGTTGACTGCGGAAAAACCCACCTAGCATAGTCAATAATCTTTCTGGATACC
CATCCAGTCCGCGACATTAGTTACCATGTTGTAATCCATCGTTGTGATAACAACCCAGCCCCCTA
ACCAATAACTGTTTCAAGAAAGAAAAAAAGGGAGTGGGAATTCATCCCAACTGTGATTTCATTTT
GACGAAACCAGGTATGAAGTGACTGGTTCGATAGGACCAGGTTAGAATACGCTCGACTGTAAGGA
GAGGTTCGATAGATCTCAACCAATAAGGTTGAGGCACGAAGTACTCGACCGATAGGGAGAGGGGC
GCAGCGGAGCTCAACTGACAGGGAGAGGGTCGCGTCAGCTAAGAT
Right flanking sequence: Indices 416778 -- 417277
GTGCAACGAGAGGGGCGCAGAGCTCTACCGTAAGGTAGAGGGGCGCAGCTAAGATAGGGAGAGAG
ACGGAGGCGGGCTCGACCGATAGGGAGAGGAGGGATGCTCGGTATTAATATTAAATTATGCATAA
GCCAGATCTAGGGGATAATAGTAACTTGGGTACGAGAGTTTCTCGACCAAGAGGTATGACTTTCC
CTGAATCAGTAGCAGAAGCAAGAACAGGATCCGGTTTTGTGGAAATAGGATATCCGGTATAAATG
TTACAAGGAACGGTATCTCCATAGAGCGGGGGCATAATCTAAAAGGGGAGAAGACTGACGGCCAG
TCAGATATTCCACCAGTTGTGGATGTTGAGTATCCAGAGTCAGAGCCAAGACTAACAAAGGATGG
AACCAAAAGAAAGGGGATATTCTTTTCCAATAGTTGTTGAGTAGCCAGATCTTGAACCATCAGAC
AGGAATTGAAAAGCAAATGAACCCTCAATTGGTCTGAAACCAAAA
Found at i:452160 original size:44 final size:44
Alignment explanation
Indices: 452097--452221 Score: 241
Period size: 44 Copynumber: 2.8 Consensus size: 44
452087 TTCGAGTCTA
452097 TTATGTTATTGATTCAACTTATGAAAAGAAAAGGATTGCTCGTT
1 TTATGTTATTGATTCAACTTATGAAAAGAAAAGGATTGCTCGTT
452141 TTATGTTATTGATTCAACTTATGAAAAGAAAAGGATTGCTCGTT
1 TTATGTTATTGATTCAACTTATGAAAAGAAAAGGATTGCTCGTT
*
452185 TTATGTTATAGATTCAACTTATGAAAAGAAAAGGATT
1 TTATGTTATTGATTCAACTTATGAAAAGAAAAGGATT
452222 CTTTTCATCT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
44 80 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.38
Consensus pattern (44 bp):
TTATGTTATTGATTCAACTTATGAAAAGAAAAGGATTGCTCGTT
Left flanking sequence: Indices 451597 -- 452096
TACCCATTATGCTAAAAATAAAGCAAAGAAGAATTAGGTGCCTTTCCCTGACATCACTTCTTTTA
GACTTAAAATAAAATAAAAAGCAGCATAGTTGGGCAACAACCTGAAGTGGGTTAACCAAATTCAA
ATTATCATGATTTTCATCAAGTGACAAATAAAAATTATAACTAAAAAAAAATAACAAAAAACACG
AAATTAGGAAACCTAGTTTATGGAAGAAATCGATAGACTCTTTCTCCTTGACCATAAAATCATGA
AAAAATTCAATCGTTCGGGCATAGACTGAACACTTCATATCTATATAAATATATACATATACAAG
TGAATAATAGATGACTGAAAACAGGGCAGAAGAAAGAAAGTCAGGCAAATCCAAGGACCATGCTG
CTCCCGCTGAAGCAATTGTAGCAGCCCCGGCACCCATTAATTTTGCACCTTCTAACATTTATTTT
GAGTTGAGAATTCTCATCACGCTTTTTAGTCACTTTTCGAGTCTA
Right flanking sequence: Indices 452222 -- 452721
CTTTTCATCTTCCCCCCCGCTCTTTTTGTTTAGTTTTGGGTGCATTTAGAAGCAAAAAATAATGA
AATTCCCTTAATACAATACGGGAATTCCCTTCTTCATGATAATATAATTGAATTCCCTTCTTCAT
GCTGGAAAAAGTGCTTTCAGAGTCCTTGGTTGAGCTACCATTACAGTTTCTTGGCATTCTCGTGC
TTGGACTGAGTCTAGCATTCCTGTGCAATTCCCTTCCAAACTTTTATGCCCCTAGGCTACTTTGA
GATGTCCCCGCTCCTCTCCTTACAGTCGAGCCCGCTGACGCGTCCCTCCCATCAAGAAAGTCCTG
ATTTGACTTTCTTTTGGTTGTAATCCCGTATTCCTTAAAGTTCAAGTACGTAATTCGTCTGTCAG
CTTAAATAAGTAAGCGAAGCGCCTAGTACTTCAAAAAGTCAAATGGGTTGAGGAGCGATTCGATT
ATATTAGTAAAATGCTAGCCGAAAGGCTGCGACGGATTCTGCGTT
Found at i:461709 original size:33 final size:33
Alignment explanation
Indices: 461668--461755 Score: 151
Period size: 33 Copynumber: 2.7 Consensus size: 33
461658 TCGCTTCCCT
461668 CCTCTCCCTGTAGGTCGAGCCCGCTGACGCGAC
1 CCTCTCCCTGTAGGTCGAGCCCGCTGACGCGAC
461701 CCTCTCCCTGTAGGTCGAGCCCGCTGACGCGAC
1 CCTCTCCCTGTAGGTCGAGCCCGCTGACGCGAC
*
461734 CCTCTCCCT-TACGGTAGAGCCC
1 CCTCTCCCTGTA-GGTCGAGCCC
461756 CGCTAACCTC
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
32 2 0.04
33 51 0.96
ACGTcount: A:0.12, C:0.43, G:0.25, T:0.19
Consensus pattern (33 bp):
CCTCTCCCTGTAGGTCGAGCCCGCTGACGCGAC
Left flanking sequence: Indices 461168 -- 461667
ATGGCACGTCAGAGCTCCCCACTCCATTATTTTCCGCTTGATTCCGAAGAAAAAAAAAAAAAGAT
TTTCTTATTCGTATCGATAGAACCTGTTGTGTGCCACATACATGGCTCGAATACCGACTTCCTGT
TACCGAATATGCATCCTGAGGGACCTAACAAAGTTCCCCTCTGGACCTGAGAGAAGAGAAGGTTC
GCGACCCGATCTCCTGCATAGATTCTCAATCCATATGCCTTTTTGAAGGAATTGGTCCATTCCCT
GGCCAATATTGGGTAAGCCAAGGGTGGAGTTCACGGATCAAAGAATTGATTATATGATATTACCG
ATCCCGATGATCTGCATACGATGTCTAAGCGCTAGGAGAAGGAAGGGGACAATAACACCGCTCGC
TTCGCTTTGAACAAAAACAAAATAAATCATCGCAACCAAAAGGAGAACCTTTTGTATTGAAATCC
GGTTTTCCCTCGCCGCTACGCCCCTCTCCTTTCAGTCGCTTCCCT
Right flanking sequence: Indices 461756 -- 462255
CGCTAACCTCTCCCTATCGGTCGAGCTCTTCAACCCTTCTCTCCTCCTGTTGGGCAGAAGCTTCG
ACGATTCTTTGACGTTCTTGCTCCAACTCCTCAATTTCTTCCAGAACCTCCGTATCTCATCCGTT
ACTCGATTTAGTTCCAACGGAGGGGCGGGCTCCTGCTCCGGGGCAGGGGCATTGAAGCCGATGTC
GAGAGGAGGTCGTTTCGAAGGGCTTGCACCGCCCCCCTCCGAGCTTGATGCAGCGTAACCTTCTT
CTGACATCATCATGTTCCCTAGAGTGAGGCCTCCACAAAAAAGAAAAAGTTCTATCAAAAGCCTC
CCTTCCCATGCGACCTTCTGTAATAATAAAGACATCACTTTCCCTAGCATCATTGATTGCATTTT
CAAAAGAAAGAGATCAAAACCCACCTTGATTAGTAAACAGAGACAAACTGAGAAAGGTCAAAATG
AAAAGAAAGAAAAGACTCAATCTATGAAACATCGAAGTAAGCTGT
Found at i:468178 original size:18 final size:19
Alignment explanation
Indices: 468145--468181 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
468135 TGCAACGAGA
468145 GGTTTGCAGAACTCGACCG
1 GGTTTGCAGAACTCGACCG
468164 GGTTTGCAG-ACTCGACCG
1 GGTTTGCAGAACTCGACCG
468182 TAAGGGAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (19 bp):
GGTTTGCAGAACTCGACCG
Left flanking sequence: Indices 467645 -- 468144
GATATAAAGCGAGTGCACCGAAAAAGAACAGGAACTGGGTCGATCTATTCTATGGCGAAGCATTC
GAAGCATAACTGCACACTCACACGATCTTTGCCGAGAGATAGGAGCATTCGGTGGAACCGGTGAA
CTACACTTGCTTCTGGATAGATGTGTGGGACAGAGGGTTTGTGGTACCTTCTTCCCACCCTTCCT
CCTCTGCTTTGAGAACCGTGTGAACGGAGAGTGGGCAGAAGGAAAGGAGGTCCTCATACGGAGTC
GCACACTGACTTGAGCAGTGCGGGAGACTGGGGAATGGGTCGAGTAAACTCCCCCGGGGCCGGAA
AAAGAACAAACGAAGCTTTACTTAGATAGGGCGTCGTAAAGCTGCTTTGATTGGTATTTCTTTTT
TCTTAGTGATTGGAAAGGAGGGCGCCGGGGTATGTTATAGAAAGGGAAGGCAGAGGTAGTACTTC
GAATGGCGAAGAGAGGGGCGCAGCGGTCACTCGAGTGCAACGAGA
Right flanking sequence: Indices 468182 -- 468681
TAAGGGAGAGGGAGAAAGGGGGGCGTTAGCGGCTCGACCGTAAGGGAGAGGAGGGGAGAGCAGGG
AAGGAATGGGAAATTGTAAAAGAGAACTTCTTTGTTGGCGAAACGAAGGGCGCCTTCGGCTAAGT
GATTCTCTGAGCCGGTCTGGATTTCCAACGCCTCAGGAAACTGGTCGAGATAGATGACAGCGTCT
TTTTCCTCTCTTCCTTACCGGGAGGGCAATCTTCTCTTATGGCCTTCACCTCCCGCCCGGCCCGG
AAATAGAACCCAGCCTCTTTCTGATCTATTCATTTCTGAAAGCAGGGGGGGATCCAGAGCTAAGC
CCCTTCTATTGCATAAGCTAAAAAAGCTATAAGCAAAGTACCAAAGGCGGAAACGAAACGCTTTG
GTTACCGACGAACGCTTCCAAAGGCGACCCTTTCGAGTTTCCGGCTGTTTCCTAGATTGAAGTAG
CCTTTCATCGCCCTACCAAACGAAAGAAGTCACTATCAAAGAGCT
Found at i:479525 original size:3 final size:3
Alignment explanation
Indices: 479519--479568 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
479509 GTCATCGTTA
* * *
479519 TCG TCG TCG TCG TCG TTG TCG TCG TTG TCG TCG GCG TCG TCG TCG TCG
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG
479567 TC
1 TC
479569 CTCCTCCAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.30, G:0.34, T:0.36
Consensus pattern (3 bp):
TCG
Left flanking sequence: Indices 479019 -- 479518
AGTCGCACATACACCCGAGTACATATTCCTCGGCGCTGAGGACACCCTCTAAGCGCGGGGGTTTT
GTTGACATTTCTGATTGGCTGTCTTGCCTTCCTAATAAGTTGTTTAACAGTTGGCATGATGAATC
ATATGCATAATGGGTTGGTTTAGGTCGCTCCTAACCGGATGATTATGCGGAGGATTAGGGATTAT
TTCTATATTAACATTCTATTCAAATTAATAGAATGTTAATATAAAATATGAAACAACCCCAACCA
CGATTTGTATGAAATTCCAGTTATTTTCTAACTCGTCGCTCCCAGTGTGCTACAAAATCAACAAT
TCCATGAGCTTGGGCTTCTGTTGCTGACATAAAAGAATCGCTTTGCAGGTCTTTGAGTATGACCC
CTAAAGGTTGATTCGTTCTTTCTGCATAAATTTTGGCGATGTCTTCCTGAATGATCATTAGTTCG
TCCATTTCCCTCAAAAATTGGATGTTTTCGTTGTTGTCATCGTTA
Right flanking sequence: Indices 479569 -- 480068
CTCCTCCAAAAAAGAAGCATGGGGTTGATGTATCATTACCCCAGCGTGAGGGAATGCTACACGTT
TGTTAGGATTTCCCACGGCCAGGATAAAAGATGCCATTGAAGCGGCCAGTCCGACGCATATTGTT
CGTATATCCGACTCCACAGCCTCCATAACATTATAAAGACTAATACCTGGGAGTATCCATCCCCC
GGGAGAGTCTATATAAAGACAAAAATCTGTGATATCATTTTCTGAATCGAGATATAGAAAAAGGT
TGATAAGTTGATTCGCTATCTCGCTATTAACGTCTTGAAACAAAAACAACTGTCTCTTTTTATAA
AGTGCATTGTATAAGTCAACCCAAGTTGACTCTTCGTCTTCTTCGCGGTATTCGTATTCGGGACG
GTCAAAGTCAACGTCAAAGTCAAAGGGTACTTTTGGAACACCAAGGGGCATTTTTTATAATGTAA
AGCATAAAGCATTAAGTATTCGAGTTTCCTTTAATAGAGAGGTAT
Found at i:479525 original size:9 final size:9
Alignment explanation
Indices: 479501--479568 Score: 73
Period size: 9 Copynumber: 7.6 Consensus size: 9
479491 TTGGATGTTT
*
479501 TCGTTGTTG
1 TCGTCGTTG
* *
479510 TCATCGTTA
1 TCGTCGTTG
*
479519 TCGTCGTCG
1 TCGTCGTTG
479528 TCGTCGTTG
1 TCGTCGTTG
479537 TCGTCGTTG
1 TCGTCGTTG
**
479546 TCGTCGGCG
1 TCGTCGTTG
*
479555 TCGTCGTCG
1 TCGTCGTTG
479564 TCGTC
1 TCGTC
479569 CTCCTCCAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.03, C:0.26, G:0.31, T:0.40
Consensus pattern (9 bp):
TCGTCGTTG
Left flanking sequence: Indices 479001 -- 479500
CAATCCACAATCCGAACGAGTCGCACATACACCCGAGTACATATTCCTCGGCGCTGAGGACACCC
TCTAAGCGCGGGGGTTTTGTTGACATTTCTGATTGGCTGTCTTGCCTTCCTAATAAGTTGTTTAA
CAGTTGGCATGATGAATCATATGCATAATGGGTTGGTTTAGGTCGCTCCTAACCGGATGATTATG
CGGAGGATTAGGGATTATTTCTATATTAACATTCTATTCAAATTAATAGAATGTTAATATAAAAT
ATGAAACAACCCCAACCACGATTTGTATGAAATTCCAGTTATTTTCTAACTCGTCGCTCCCAGTG
TGCTACAAAATCAACAATTCCATGAGCTTGGGCTTCTGTTGCTGACATAAAAGAATCGCTTTGCA
GGTCTTTGAGTATGACCCCTAAAGGTTGATTCGTTCTTTCTGCATAAATTTTGGCGATGTCTTCC
TGAATGATCATTAGTTCGTCCATTTCCCTCAAAAATTGGATGTTT
Right flanking sequence: Indices 479569 -- 480068
CTCCTCCAAAAAAGAAGCATGGGGTTGATGTATCATTACCCCAGCGTGAGGGAATGCTACACGTT
TGTTAGGATTTCCCACGGCCAGGATAAAAGATGCCATTGAAGCGGCCAGTCCGACGCATATTGTT
CGTATATCCGACTCCACAGCCTCCATAACATTATAAAGACTAATACCTGGGAGTATCCATCCCCC
GGGAGAGTCTATATAAAGACAAAAATCTGTGATATCATTTTCTGAATCGAGATATAGAAAAAGGT
TGATAAGTTGATTCGCTATCTCGCTATTAACGTCTTGAAACAAAAACAACTGTCTCTTTTTATAA
AGTGCATTGTATAAGTCAACCCAAGTTGACTCTTCGTCTTCTTCGCGGTATTCGTATTCGGGACG
GTCAAAGTCAACGTCAAAGTCAAAGGGTACTTTTGGAACACCAAGGGGCATTTTTTATAATGTAA
AGCATAAAGCATTAAGTATTCGAGTTTCCTTTAATAGAGAGGTAT
Found at i:483701 original size:21 final size:21
Alignment explanation
Indices: 483677--483716 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
483667 TTTTCATAAT
483677 AAAAATTCGATTATGGAATAG
1 AAAAATTCGATTATGGAATAG
483698 AAAAATTCGATTATGGAAT
1 AAAAATTCGATTATGGAAT
483717 TCTCTACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.30
Consensus pattern (21 bp):
AAAAATTCGATTATGGAATAG
Left flanking sequence: Indices 483177 -- 483676
TTGCAGCGCCTGTTGATGCTGAGCCTCCATTACAGGAGGAGGAAACTAGGCGCAAGGAGCTAATG
GATCGCCTGTCCATCAATACTATTGGGCGATCTAGCAGCGAACAATGGAAAGATTCCATTGTGGA
TATACAGCTCCTAATGGAAAACAAAATAGAAAGAGCTCTGCTCTCCGACGGCTATTCTCCGGATT
CGATTCTGGCGAAACGACATCAGATAAGGGGGTTTTTATTCTATCCGCAAGGTACTCCCCTTTCT
GAGTCCACCGTTAAGAAACATCTTTTTATAATGGAAAATTATGGAACGCACCGTAGCCTTCCATA
TAAGCGGATTATGGATGCTATATCTAATTATGATCTATCTTTATAGAATAAATAGTATAGTATAA
TAGAAATTAAGACTAAATTAATAAGAAATGCATTTTCTGGGGGGGGGGTACGGCGGGGAAAGGAG
GAGGACACTGGGCGGGATCTATCAGCAGCGGCATTTTTTCATAAT
Right flanking sequence: Indices 483717 -- 484216
TCTCTACCAAAGCTGCGGAACTAATGACTCTATTAGAAAATCGAATTACCAACTTTTATACGAAT
TTTAAAGTGGATGAGATCGGTCGAGTGATCTCAGTTGGAGATGGGATTGCACGCGTTTATGGATT
GAACGAGATTCAAGCTGGAGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATC
TTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATACTGCTATTAAAGAAGGAGATCTT
GTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGA
CGCCTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAG
TGAAAGCCCCAGGGATTATTGAACGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCG
GTAGATAGCTTGGTTCCTATAGGTCGTGGTCAACGAGAACTTATA
Found at i:495633 original size:11 final size:11
Alignment explanation
Indices: 495610--495639 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
495600 CGTGTACTTT
495610 CTACTTA-TTA
1 CTACTTATTTA
495620 CTACTTATTTA
1 CTACTTATTTA
495631 CTACTTATT
1 CTACTTATT
495640 AGTTTATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.27, C:0.20, G:0.00, T:0.53
Consensus pattern (11 bp):
CTACTTATTTA
Left flanking sequence: Indices 495110 -- 495609
CTTCAAGATCATTGGTCTCAGGGTAAGTAGGTGAGTGATCCGTGGAAGGGTTTGACGGTAACCGT
TGGCTAAGAGCCCGCTGCAGCCCGAAGCCGACAAGCAATAGGGGCCTAGAACCAAAGGAGAGAAA
GTAGACGTATCTGCAAAAGATAAGCAAAACCGGCGCAGAAAAAGACGCATGCGCTTCTCAATTAT
ACTATATAACTATATAATATAGAATTGCCCCGCCATCAAAAGAATAAGAATCCGTTGTTCCATAA
TCTCCCGAAGAAGCTAAATCCTCATCTTCATCTGCGGATACAGGCGGACGCATATGAATCTACAT
TTGAATACCCATCTCCAGTCGAATCCGCTTCATAAAAGGGGATACCCTTCTCCTAGAGTTTTGGA
AACAAATGAACGAGGACCCTCCCGCCGACACGAACTCCGAAGCAAAAGCATAGGCTTCAGACGTT
TCTAGGGCTTGAGTTCCTTTTCAAAATGCAAGGGGCGTGTACTTT
Right flanking sequence: Indices 495640 -- 496139
AGTTTATTAGTCTCGTTATAACCTTACTCTCGCGTCTGGGTCTAGAACCTTTGGACTATCGGTTG
AGCCTCTTGCTAAAGGCCATCTCTATCTACTGATCGAAGCCATGAGGAATTACTTGATTGATAGT
ACCCCTTTCCACTCACGGGATAGATAGAGGCTGGAAGCCTACCGTTTCATACTTCTATTATAGGC
AGTTAACCAACCCCTTCTACGAAGAACCTATTGGCAAGGTTGATGGGTAAGTTGCGAAACAGTAT
TCACCACGCTCGCCATATCGAGGGCCGGATAAGGCATTCGGGGCAGGCTATTGGAGAAAGATCCT
ATCGCTACTTTTCTCTTTCACTTCACTTTTTTATCCGGAAATGAGGAGTATCTTAGCGGAAGCCG
TTACGTCAGCTTAACTAAGAGGCATGATCCGTGCTAGCAGATTAGTCTCATCCTGGGCGACCTAC
TCTCCTCAGCTGTTGCTGCCGCTAGCGGTAGTCCCTTATGCCTAC
Found at i:503364 original size:24 final size:24
Alignment explanation
Indices: 503332--503379 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
503322 TCAATACCAA
503332 GAAGGGAAACTTTTTAGGTAAGCC
1 GAAGGGAAACTTTTTAGGTAAGCC
503356 GAAGGGAAACTTTTTAGGTAAGCC
1 GAAGGGAAACTTTTTAGGTAAGCC
503380 TCGGTTGTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (24 bp):
GAAGGGAAACTTTTTAGGTAAGCC
Left flanking sequence: Indices 502832 -- 503331
AAGCATGAATGTAGATAGCGCTCTAGTGATTGGTCTCTTCCCTAGGCCTTGTTTTAAGCTTGAAC
GGAGAAAGCGAAGCTTTAGGTTACTAGTAGCAGTAGCCTTGGAAGGTGTTAGAGGTTGAGACTGA
GTTTGACTACCTTTAGGTGTGTTCTTGCGTGGAGGCCGAGTGGGACAGTCTCGAATTCCATTCCC
AGGCTTCTTTCAGTAACATGAATTAGATGAGCCAGAATAAGATGAAGGTCAGCATGATGAAATCA
AAACATATTTGGAAGGCAGTGAAGTAAGCGGATATGGAGTACTCGAGGGACAGGCCCTGAAGCGA
AGGACGGGAACGAGCGGGATCTCAGCCGACCAGGAAAGAGAGAGTCAACGCCGGTAGCGGAGAGG
ATTAGCCTAGGCTCTTCCCCCCCTTTAGGGAAAAGAGGATGAATTCATTTCTTTCTTCAACGGAA
TCTACCAATGGAACAATCTTTGAAGAAGAGAGGGGTCAATACCAA
Right flanking sequence: Indices 503380 -- 503879
TCGGTTGTTCCTAGCTTTAGTGGGCTACGAGGACAGTAAGCATCATCGGCGGTTGAAGAACCCGA
ATCAGAGGCTTCAGGAGTCAGAGTAGAGAGTGCTTCGTCTCCAATCCAAAGAAAGTAGGATGAGA
CCCGGTCTGGGTGCGATGAGAGGTGGCGCCGCTGAGAGCTATACTATTTCCTTTCCAAGAGTGTA
TCTGTTCCGGAGAAATAGGGTTTGGTGAGTTCGGATCAATGCAATGGAAGAAGTTGCCTCTTTTA
GGCCAATGAGCCTAATCTATCTGTCTGTCTTACATGCCATCTTAAACTTCTTTTTTTGACCAGAT
TCATCCTAACAACTATCGATTAGGATGAATCACACGTGGGAGAGATATTCAATCTCTGAGCAGAC
TGAAATCCCTTACTTTGCCATTCTTTCCAGAATAGGATTTTGCTTAATATCATTTGGATGGACTC
AGATCCTTTCATGTAGGAGAGTCTTTGATGGGCTTTGAATTTGGA
Found at i:538901 original size:24 final size:24
Alignment explanation
Indices: 538869--538915 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
538859 AAGCAGCGCG
*
538869 TCGTGCTATAATCGGACAATTCCA
1 TCGTGCTATAAGCGGACAATTCCA
*
538893 TCGTGCTATGAGCGGACAATTCC
1 TCGTGCTATAAGCGGACAATTCC
538916 GAAGAAATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (24 bp):
TCGTGCTATAAGCGGACAATTCCA
Left flanking sequence: Indices 538369 -- 538868
TAATTGAGTCGGTCAAGATTCAATCTGTTTATCAAAGTGCTTCTCTGATTGCTCAAGACATCTCT
TTTCAACTGAGGAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGTGAAGGATATTCC
ATTAGTAATGAAAAAAGGGGTGGGGGGGATCCGTATATGTTGTTCAGGTCGATTAGAAGGCGCAG
AAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTATACCAGAAAATC
GATTATGCTCCTGCAGAAGTATCTACTCGTTACGGAATCTTAGGTGTTAAAGTGTGGATTTCTTA
TAGTCAAAAAAAGGGGGGACGTGCTATATCCGAAACGTACGAAATATAGTAAATATCGTAAAGGC
AGATGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAG
TTGTCAAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCG
Right flanking sequence: Indices 538916 -- 539415
GAAGAAATGGTAAGATATGGGTAAGAGTTCTCGCAGATCTTCCTATTACCGGGAAACCTACAGAA
GTAAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGGTTGCTCGTGTGTCCACGGGACAAAT
CCCATTTGAAATGGATGGTGTGAGTTTTTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATA
AACCATGTTCGTCAACCAAGTTTGTTCAGTGGTCGTAACGTAATTGGTTAGTGGGGAAAAATCGG
GCCGGGATTCAAAAGAATTAGGCGAAGTGTTTGTTCCTGAACGCCTGTCTAGGTATCTGTGGAAA
GACACTAAGGGAGAGGGATATACTCCTTTTGTAATCGCCGAAATTGTACGATGAACCTTTTTTAG
GCGTACGCCCCATAAACGTATTTTTTTTTATTTTTGCATTTTCATTCATCAATAAAGCCCGCGTC
ACTCATTTCTGGTGATTATGGATTGGCTTAGCCACACCGGCCATT
Found at i:542281 original size:19 final size:19
Alignment explanation
Indices: 542257--542294 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
542247 CCCCTTCTCT
542257 AAAAGCTTCTCTGATTCTG
1 AAAAGCTTCTCTGATTCTG
542276 AAAAGCTTCTCTGATTCTG
1 AAAAGCTTCTCTGATTCTG
542295 TTGACATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (19 bp):
AAAAGCTTCTCTGATTCTG
Left flanking sequence: Indices 541757 -- 542256
GAGGGAGTCGAAGACGAAAGAGTGAAACTCCCAAGAGCTAAGGTCGATCCAAGGACTCCACTAAA
GACACGAAGTGTCGATCAACGACCTTCAAACAAGACCTTGACAGGTAGTCCAGGAAGTCTTCTAA
CTGCTTCTAGCTGGTACAACCCCTAAGATCGTCTATAATAGTAAGTAGGTTCCTCCCCGCTATGC
CACTGTATAGGCGTAGTCACTCGAGTTCAATTGAGTGACCGCTCCTGCTTGCTATTAAGAAGAAA
AACTCCTCACCTTTTAAATGGAGTACTTGGTGAAGGCGTAATCACTGAGGGACTTCCCCTCTTTT
TGTCATTCTACCGGCTGGGACAAACCCTCTCTTTTTCATTCCCTCAAAGGTTTGGTAATTGGCTC
CTCTTGGTTGAGTTGCTTAGAAAGCTCCCTCCTCTCGTCGGCTCTTCTCCTTCATCTGTATTTGA
CTTTCCTTTTTCGGCCTAAGGAAGATTAGCCCCTGCCCCTTCTCT
Right flanking sequence: Indices 542295 -- 542794
TTGACATGAATGAAGCGGCAAGAATCGGTTGAACTAATGGCCTTGAATGAACCAGCCTGAACTGA
AAGGGAAGAGTTTGATTTCCAGCCATAGTCATAGCGGGCATTCTTTCTTGCTTCTTGTCTACTCC
CATGCCTGCTTTCGATCATATAGGTAGGAAGACAAATAGGGTCAAATCAATATCAATCAAGATTG
TTCGTGATGCTGCTGCTTGATTTTATGTAATCCCGGGGTCAGGCTCTGACTCGGATTCCTAGTCG
GAGCTGTTGTTTTCCCGAATCGAAGGCTTTCTGTGGCCTTTCACTTCTCCCACTAAGATCATACC
TTTTCTGATTTGGATTTCCATTTATTCTCCTTCCATGGAACCTTATCTGCCTCTGCCTCAGTAGC
CGACTTTGCTTTTGGTAAATCTGTATCCGCTGCTATCTCCCCAGAAGGGTATGGAACTACTTTAG
TTGCATATAGCTAACTAAGGTCGGGACTGGCCGGCCCCCTCTAAG
Found at i:549545 original size:32 final size:32
Alignment explanation
Indices: 549445--549548 Score: 115
Period size: 32 Copynumber: 3.2 Consensus size: 32
549435 GTTCCTTTTC
549445 CCCTCTCCTTACAGTCGAGCCCGCTGACGCGA
1 CCCTCTCCTTACAGTCGAGCCCGCTGACGCGA
* * * * *
549477 CCCTCTCCCTTACGGTCGAGTGACCGC--CCTC-T
1 CCCTCT-CCTTACAGTCGA--GCCCGCTGACGCGA
549509 CCCTCTCCTTACAGTCGAGCCCGCTGACGCGA
1 CCCTCTCCTTACAGTCGAGCCCGCTGACGCGA
549541 CCCTCTCC
1 CCCTCTCC
549549 CTATCGGTCG
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
29 5 0.09
31 13 0.23
32 20 0.36
33 13 0.23
35 5 0.09
ACGTcount: A:0.12, C:0.47, G:0.19, T:0.21
Consensus pattern (32 bp):
CCCTCTCCTTACAGTCGAGCCCGCTGACGCGA
Left flanking sequence: Indices 548945 -- 549444
CTGCCGCCATCCCTGCTATTGCTTATGGGACTGAATCATTCTAAAGAAAATTAGATCAAGTGCTT
ATGCCCCTTACCCCTTTCGCAGGGGGAACCAGGTATTCAATGGGCTATGAATCCGGATATTGACT
TCTTTACGGAACTAAAACGGAGATTCAAGGATTTTTGCCCACCTTTAGAGTCAAAGTACTATGGG
GTAGTCCTTATTAGTCAAGCTTTGATACGAGAAAAGCCCTGATAGTTTTAGGTTCTAGAAAGGCT
GAGACTAAGGAGAAAGAAGAAAGCAGAGCTAGCTACTAAAAGACAAGAGCGAATATCCCTGCTAG
CGAAAAAAAAGCCAATATCCATCTCTTCAGCGCGAGTTCTTGTTCAGATAGCTATAGCTCCCCAG
GCAGCACAAGAGGAGTAGCTGTTCCACCGGGAAGACTTGATGAAGGGACAGTATTAGCCTAACAT
ATAACATAACTCCAGTACCCCCGGGAATAATACCCGTTCCTTTTC
Right flanking sequence: Indices 549549 -- 550048
CTATCGGTCGAGTTCTGCAAACCTCTCCCTTCAGTCGAGTCACGCTCTTCAAGCCCTGACTTTGC
CTTTCAATTCAGCTAGCTCTTCAACCCTGCTTGACATAACATAATATCCTTTGATCCCGGATTCC
ATTCAAGGAACTTCAGGAAGGTCAGCAGGTCAGGTAGTCCTGGTATGCCCTGGATGAATCTACCA
CCAGGGTTAGGCATCCGGAGTTTTGCCGTTCAGGTTAAGTTCCCAAGGTAAGTCTCGATCAATTG
AATAAGTTGACTAGCCAGTCCTTCTTTCACTCGAAGTGAGCCCGTAGAGATGTAGTTTCATAGGA
AATCGGCAGCTGTTCACTCACAGGAAAAGAATTTCACCTCCTCGGTACCTAACGTGTGTGGTCTT
GCTAGATTCATTGATTGGATTGACCGTCTAAGTCTAGTCTTTCTTTCTAGCTTTGAACCTTTGAG
CTAACTGAACTAGATCAGCACTCGATTAGCTGGCAAAAGCGCTCT
Found at i:557401 original size:32 final size:32
Alignment explanation
Indices: 557360--557468 Score: 211
Period size: 32 Copynumber: 3.4 Consensus size: 32
557350 CTGTAGGTCG
557360 CCGCT-ACGCCCCTCTCCTTTCAGTCGAGCCT
1 CCGCTGACGCCCCTCTCCTTTCAGTCGAGCCT
557391 CCGCTGACGCCCCTCTCCTTTCAGTCGAGCCT
1 CCGCTGACGCCCCTCTCCTTTCAGTCGAGCCT
557423 CCGCTGACGCCCCTCTCCTTTCAGTCGAGCCT
1 CCGCTGACGCCCCTCTCCTTTCAGTCGAGCCT
557455 CCGCTGACGCCCCT
1 CCGCTGACGCCCCT
557469 TCTCTATACA
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
31 5 0.06
32 72 0.94
ACGTcount: A:0.09, C:0.49, G:0.18, T:0.24
Consensus pattern (32 bp):
CCGCTGACGCCCCTCTCCTTTCAGTCGAGCCT
Left flanking sequence: Indices 556860 -- 557359
GTCGGGAAAGAAAAGAAAAAGATATCGAGTGTCCTAATAACAGGAATCTTCAAGTCCTCCTCTAT
GTTCAAGGCATATTGTTGACATGATGTTAAGCACTTTTCAATCTTCCAAGTCGTGTGAAAATACC
ACGGGAATGCGACATCACTTAGAGAGGAAATCTTGGTAATCTTATATAAGGACACTCGAATCCGC
TCTGAGGGCGGGGAGTGAAGGAGCGAAGCGACAGAGCGAGCAAAAAAGGAGAGAACGACCCAAGG
ACATAGAGAGGGCCTTGAGACCCCTATGGGGTCGGCTAATCCGTGCTCTTAGTCAATAAAGAAGG
ACGGTGCACAATATGCACTTCTTTGGCGTCCTTCGGACCGAGGACCAAGGTGGAAGGGTTTCTTT
CCGAGGTTTTCTACCTGATTACACGTTGGGTGGCTTCCTTCTATCTGTGGAACCCGACATTGAAG
GGTTTTGGCCCATGTCCGCAACTCCCCTCCTCTCCCTGTAGGTCG
Right flanking sequence: Indices 557469 -- 557968
TCTCTATACAAATACAAATAAGAGTGCTCATATAAAGGTAAGAAAGAAGTGAAGTGCTTAATCGA
TTAAGCAATCTTTATGCGAGAAGAGGTTCTATCCTATTGAGGTCTTTCCCTAGGAAGTCCAAGTT
TCCTGGGTAGGTCTAACTACGGCCATCAAGTACTAAATTATGCCCGAGGGCTATCTTTCTGTTCT
AGAGATTGTGAGTGGAGGCCCTATCTTCTTGTGTGCTAAATTTCTTATGAGCTTCTTTGTATAGA
GAAGGGTTCCCATCAGGGATCAATATGGCACCCTCTCAATAGTCTTAGTTCAAGTATCACATAGA
GATATGAGTCTTTCTTCAGGCCCAGGCGAGAAGGAGTATGGAAAGGAAGCTCATTTGGAAGCCTT
TACATAAGTGCTCTAGTCAAAGTCTGAAATAGGGGCGAGTGATCAAAGCTAATGTAAGATGTATA
AAGACTCTCTCGATTATTCACTTCCTAAAAAACGTAAGATCTACA
Found at i:560894 original size:25 final size:26
Alignment explanation
Indices: 560866--560917 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
560856 CACGCCCTCT
*
560866 CCCTCTCCCTGTAGGTCGAG-CCCGC
1 CCCTCTACCTGTAGGTCGAGTCCCGC
560891 CCCTCTACCTGTAGGTCGAGTCCCGC
1 CCCTCTACCTGTAGGTCGAGTCCCGC
560917 C
1 C
560918 TCCGTCTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.10, C:0.46, G:0.23, T:0.21
Consensus pattern (26 bp):
CCCTCTACCTGTAGGTCGAGTCCCGC
Left flanking sequence: Indices 560366 -- 560865
GAAGAATAATTTGAGTTCCGCGCTCTAACCTCTGGTACTAAGAATAGGAGTTACCCAAAAAGCTA
ATCCCTCGTTGTAAGCCAGAGTAGAATCTTAAGTGCGCAGCAAGGTAGCAAAGCTAGATTCGTGG
TTCAGGTATTCAGGTTCAAGTTGAAAGAAATCAAGAAAGCGCCCGAGAGTCAGGGCCTGTAGTTG
TGCTATGCTTCCGGGAAGAAGCCGGCCCTAGCTAGCCTTCAGCACGAACGAGGTCTCACTCTAGA
GAAAGCGTCGTGAAGCCCAGAAGTGCATAGAAAAAGAATAGGTATACTAGTTATTTTCACTATTC
AATAAGAATAGGGATTTTCAATGCTAGAAAGGACCCCTGGATAACGACTCATAGAATCTATTCCT
ACTTGGAGGGTGAGCTAGACTACCTTTGGTCGAGAAGTCAACTAACTTATAGTGCTTTCCACACC
CCGCCCCGTAGAGGGAAATTGACCTGTGAATGTGACACGCCCTCT
Right flanking sequence: Indices 560918 -- 561417
TCCGTCTATCTCCCTATCGGTCGAGTCTGCAAACCCGGTCGAGCCCCGCCTCCGTCTCTCTCCCT
TACGGTCGAGTCCGCTGCGCCCCTCTCCCTTACGGTCGAGTCCGCCCTCTCCCTCTCCTTACAGT
CGAGCCCGCTGACGCGACCCTCTCCCTATCGGTCGAGTTCTGCAAACCCGGTCGAGTCCGCTGCG
CCCCTCTACCTATCAGTTGAGCGTCTCCAAACCTCTCCCTTACGGTCGAGTCCGCTGCGCCCCTC
TCCCTGTCAGGTTGAGCGTCTACCTTCCTTTCCTTTCAGTCAAGCTACTTCGTGCTTCTCCTTAT
CAGTCGAGCCCGCTGGCGCGTCCCTCGGATCGATTTTCGTTCTGGTAAATCTCATTCTTTTGAGG
GGTCGGCTATTCCCTCTCGTAGTTGATTCGGTATGTGAGGGATAGAGAGGTGTGCAAAGAGCGAA
GCCCTATCATACGAGTGAAGCTAAAAGAAGGAATCGGCAGAGTGC
Found at i:561011 original size:30 final size:31
Alignment explanation
Indices: 560975--561085 Score: 122
Period size: 30 Copynumber: 3.6 Consensus size: 31
560965 GCCTCCGTCT
560975 CTCTCCCTTACGGTCGAGTCCGCTGCGC-CC
1 CTCTCCCTTACGGTCGAGTCCGCTGCGCACC
* * *
561005 CTCTCCCTTACGGTCGAGTCCGC-CCTCTCC
1 CTCTCCCTTACGGTCGAGTCCGCTGCGCACC
* *
561035 CTCT-CCTTACAGTCGAGCCCGCTGACGCGACC
1 CTCTCCCTTACGGTCGAGTCCGCTG-CGC-ACC
561067 CTCTCCC-TATCGGTCGAGT
1 CTCTCCCTTA-CGGTCGAGT
561086 TCTGCAAACC
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
29 18 0.27
30 29 0.44
31 2 0.03
32 8 0.12
33 9 0.14
ACGTcount: A:0.10, C:0.45, G:0.21, T:0.24
Consensus pattern (31 bp):
CTCTCCCTTACGGTCGAGTCCGCTGCGCACC
Left flanking sequence: Indices 560475 -- 560974
GTAGCAAAGCTAGATTCGTGGTTCAGGTATTCAGGTTCAAGTTGAAAGAAATCAAGAAAGCGCCC
GAGAGTCAGGGCCTGTAGTTGTGCTATGCTTCCGGGAAGAAGCCGGCCCTAGCTAGCCTTCAGCA
CGAACGAGGTCTCACTCTAGAGAAAGCGTCGTGAAGCCCAGAAGTGCATAGAAAAAGAATAGGTA
TACTAGTTATTTTCACTATTCAATAAGAATAGGGATTTTCAATGCTAGAAAGGACCCCTGGATAA
CGACTCATAGAATCTATTCCTACTTGGAGGGTGAGCTAGACTACCTTTGGTCGAGAAGTCAACTA
ACTTATAGTGCTTTCCACACCCCGCCCCGTAGAGGGAAATTGACCTGTGAATGTGACACGCCCTC
TCCCTCTCCCTGTAGGTCGAGCCCGCCCCTCTACCTGTAGGTCGAGTCCCGCCTCCGTCTATCTC
CCTATCGGTCGAGTCTGCAAACCCGGTCGAGCCCCGCCTCCGTCT
Right flanking sequence: Indices 561086 -- 561585
TCTGCAAACCCGGTCGAGTCCGCTGCGCCCCTCTACCTATCAGTTGAGCGTCTCCAAACCTCTCC
CTTACGGTCGAGTCCGCTGCGCCCCTCTCCCTGTCAGGTTGAGCGTCTACCTTCCTTTCCTTTCA
GTCAAGCTACTTCGTGCTTCTCCTTATCAGTCGAGCCCGCTGGCGCGTCCCTCGGATCGATTTTC
GTTCTGGTAAATCTCATTCTTTTGAGGGGTCGGCTATTCCCTCTCGTAGTTGATTCGGTATGTGA
GGGATAGAGAGGTGTGCAAAGAGCGAAGCCCTATCATACGAGTGAAGCTAAAAGAAGGAATCGGC
AGAGTGCCTCTATCTAGATAGATTAGATGGCTGATGATCTGGCTCTTTCGTATTTGGACTATCCA
TTTAGGAAGTCCCTTCTTATTTCACTACTCCTGAGTTCGTAGTTGAAGGAAGGTCTCGTATCCCG
AGATCTATGTGAAGTGAAGAGAAGAAGGTTCGGTGAGTTAACATT
Found at i:573873 original size:29 final size:29
Alignment explanation
Indices: 573840--573921 Score: 164
Period size: 29 Copynumber: 2.8 Consensus size: 29
573830 GGGGCGCAGC
573840 GGTCACTCGACCGTAAGGGAGAGGGATGG
1 GGTCACTCGACCGTAAGGGAGAGGGATGG
573869 GGTCACTCGACCGTAAGGGAGAGGGATGG
1 GGTCACTCGACCGTAAGGGAGAGGGATGG
573898 GGTCACTCGACCGTAAGGGAGAGG
1 GGTCACTCGACCGTAAGGGAGAGG
573922 AGGGGACGTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.24, C:0.18, G:0.44, T:0.13
Consensus pattern (29 bp):
GGTCACTCGACCGTAAGGGAGAGGGATGG
Left flanking sequence: Indices 573340 -- 573839
AAGTGCTTGGTAGGCCAACAGCCCAGTGAACCGGACGGGGCACTCGACGAAAGGGGGGCACACTG
AGCAAGTACGAGAAATTGGCCCCGCTCCGCTTTATTCAAACCAAGGACCTATGGAAGTCGGGGCT
CGTCCCCGGTCAATATTGGATCAAACAATAGGGGGCCGTAGCACTGACCTCTTTTTTTCTTGATT
CAAGACAATAGAGGAAAAGATCGTACAGTTCCCTACCGAGACTCTCAACGAATCCTACGCGCGCT
GGGCATATCTTTTCCGTGCGTCTTTCTCGTGGCGGAAACAGAACAACAGGGAAAGACCCGGCCGA
CCTGCTTTCTTAATAACTGAATAGCTCGAGGGCGAGCTTTATTTAAGAGAGAATGGGGAGTGAAT
AGAAAGGGACGAAGTGACTCGACTGAAAGGAGAGGCACGAAGTAGCTTGACTGAAAGGAAAGGGG
CGCAGCGGTCACTCGACTAAAAGGAGAGGGACGGAGGGGCGCAGC
Right flanking sequence: Indices 573922 -- 574421
AGGGGACGTTCTTGGTTTGGGGGCTTTCTTTCGGGCTCCTCTCGATCTTATTCATAGTTGGGAAG
GGGGAAGGGGTCTAAATCAATGGACATTAATGAACCATCATTGATGGACGTTGCACATGACACGA
TCAATTCGACTCAAGGTCCGGCGCTAATAGAGGTTGCTTACTCTCCCTAGTAGCGAAGGAAAAGG
GCAGGGCTTTTTTCGTAGTAATAGTAGGCGGGTCTCATGAGATTGATGCCGCTTTAAGAGAGAAG
GGCGGAATCAAATGAAGGTCGAAGGACCATTCGATTCATTAAGGGGCATAGCGGCGCCCTCGCCT
GGCGCCATTCCCGAACCTAGCAGCAGACGGGCGGGCTAGGCCTGAATTCAGACCAGACCTGACTC
TTCTTTGTTTGAGCTGCTCCCACACACGCAGACCAGAAGATCTCAGTTGTCCTGGGCTGGACAGA
CAAGTATGTAGAGATCTTCGTGGGACCGGGGAGGGAATCTCAATC
Found at i:574695 original size:33 final size:33
Alignment explanation
Indices: 574653--574750 Score: 196
Period size: 33 Copynumber: 3.0 Consensus size: 33
574643 AGGGCGCTAC
574653 CGCCAGCGGTGACTCGACCGATAGGGAGAGGGT
1 CGCCAGCGGTGACTCGACCGATAGGGAGAGGGT
574686 CGCCAGCGGTGACTCGACCGATAGGGAGAGGGT
1 CGCCAGCGGTGACTCGACCGATAGGGAGAGGGT
574719 CGCCAGCGGTGACTCGACCGATAGGGAGAGGG
1 CGCCAGCGGTGACTCGACCGATAGGGAGAGGG
574751 AGAAAGGGGC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.21, C:0.24, G:0.43, T:0.11
Consensus pattern (33 bp):
CGCCAGCGGTGACTCGACCGATAGGGAGAGGGT
Left flanking sequence: Indices 574153 -- 574652
ATGAGATTGATGCCGCTTTAAGAGAGAAGGGCGGAATCAAATGAAGGTCGAAGGACCATTCGATT
CATTAAGGGGCATAGCGGCGCCCTCGCCTGGCGCCATTCCCGAACCTAGCAGCAGACGGGCGGGC
TAGGCCTGAATTCAGACCAGACCTGACTCTTCTTTGTTTGAGCTGCTCCCACACACGCAGACCAG
AAGATCTCAGTTGTCCTGGGCTGGACAGACAAGTATGTAGAGATCTTCGTGGGACCGGGGAGGGA
ATCTCAATCGATCTTTTCGGCGGATTCCTTATCACGCCACGCACGGAGATCTTTCTATTGATAGA
TAAGAGGGCTCCCCCCTTTAACAGACTCTTAAAGGTTAGGTTACTACCTCGGAAGAGGTGTACTT
TGTACCGCTCGGAGGTCATATAGATCGAAACCCGGAGCGATAAGAACGAAAGCCCTACCCACAGC
TACAACTACTGGCGCTTCAAAAGGCTTAGATTCTAAGGGCGCTAC
Right flanking sequence: Indices 574751 -- 575250
AGAAAGGGGCGGAGGCTCGACCGATAGGGAGAGGAGGGAAGCTCGACTAAAAGGAGAGGACAGGT
GATTCGAAGTCACTACGAAAGGGTCGGTCAATAGCATAGCTCTTTTTTCCCGGGTCTCCTTTCGA
AGGAAAGGCCTTCGCATTCCCAATCTCAAAGATTTGATAGAATGGTCCAGCCCACCCAAGAGCGC
TTATGTCATATGGGAACTCATGGCTGGAAACAATCCTTATGGTTTTTGATATCCGGTAGGAATAA
TAAGAATCAAAGTCTAGGTTGGTTGGTGAGCCTAGTGATAGGAGACTATCTAGCTTGGTTCGGAG
AGCACTTGTTGGGTTAAAGATTTTTTTGTTGCTAAATGTTACGGCCTAAATGCTGAACTATTGAC
CCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCTCGGACCGCATACATACATCCGTAAGTA
ACTTAGTGCAACATGGCAAATTTCATTGAGAGGAATCAGAAAAGA
Found at i:586315 original size:27 final size:27
Alignment explanation
Indices: 586277--586406 Score: 260
Period size: 27 Copynumber: 4.8 Consensus size: 27
586267 ACGCATCGAG
586277 GAGCTCGAGTGCAACGAGAGGGTTGAA
1 GAGCTCGAGTGCAACGAGAGGGTTGAA
586304 GAGCTCGAGTGCAACGAGAGGGTTGAA
1 GAGCTCGAGTGCAACGAGAGGGTTGAA
586331 GAGCTCGAGTGCAACGAGAGGGTTGAA
1 GAGCTCGAGTGCAACGAGAGGGTTGAA
586358 GAGCTCGAGTGCAACGAGAGGGTTGAA
1 GAGCTCGAGTGCAACGAGAGGGTTGAA
586385 GAGCTCGAGTGCAACGAGAGGG
1 GAGCTCGAGTGCAACGAGAGGG
586407 ACGGAGGCGG
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.29, C:0.15, G:0.42, T:0.14
Consensus pattern (27 bp):
GAGCTCGAGTGCAACGAGAGGGTTGAA
Left flanking sequence: Indices 585777 -- 586276
TCGCCGGAGAAGCAAGCGAAATCCATGCAGTCGTCAATAATAACCTTCACTTCAGAGGCCAGCTA
GCGGTCAATCTCTTAAAGCCACGGAGAATAACAGACTTTGCACACTCCTAACTTCACATCTTCCC
TGGGACTCAGCTACTAGTCCGAAACCCAAAAGCCGAAGGAAAATGAGACTAGCTAAGACTAGGGA
AAGAGCGGCTAGCTAACTAGCTGATAGAGATGGCAACCATGGAGTCCAACCTTTCCAATGTTGAG
GAAGAGGTCCGTGCTGGAAGGCCAGAGCAACGCCTTCCTGAGGCAAGTAAGAAGAGGGCTAAGAC
TACTGATCGTCTTTCCTCCATTGAGGCAAAGCTTGCTCGCCTGGAGCTTGCTGTTGCTGATGATC
GAGGACTGTGGATCGCTTAGCATCCTTCGAAGCAAAGCTCGCCAAGATAGAGCTTGCCGTGGGAG
ACGACCGGGATAGGCTAGAGGCGCGTCAGCGGACAACGCATCGAG
Right flanking sequence: Indices 586407 -- 586906
ACGGAGGCGGACGCCCGACTTGCCCCAATTTATATGAGCAATCGAGTTCACCACCGGAAAATGCT
ATTTTTGGCCAACGAAGTACCCAATCAGGGTCTTTTGCCATTCCTCACAACCTACTGAAGCCACC
TCCGATGGCCTTAACCCTACTATTCTCTATAAACGGCTTAATGTAACTTAAGTCCATAGGAGTCA
AAGTCTTACCTCTGTGCGCCCTTCTCTCCATTCTCTGCTGAGACTAGTCCTTTGACAGCATTTGC
ATAGCTGGTAGCACCATCTGGAGAACTAGATCCTCTAACCGCAGCTGAGGATGTCCCCTTAACGG
CTGTAGCAAAGCTAGGTACCTTAGTGCTAGCAGTTTCCTCTGTGATGGGGGAGGCTTCTGCAAAG
CCGGCATTCTCCCGCCGGACACACCCTGTACTCTGGCTTTCAGAACAGTGGCAGCATCTCCCGGA
GCTCCCTCCATTTGTGTCCAAATTCAATCCACCAGCTGGACTCTC
Found at i:588192 original size:57 final size:57
Alignment explanation
Indices: 588123--588266 Score: 279
Period size: 57 Copynumber: 2.5 Consensus size: 57
588113 GGGATCCCTG
588123 GATCGAGTGGCCGGTAAATCACGGATCAAAAAGCATATTTTGGAGAGATTCTTCATC
1 GATCGAGTGGCCGGTAAATCACGGATCAAAAAGCATATTTTGGAGAGATTCTTCATC
588180 GATCGAGTGGCCGGTAAATCACGGATCAAAAAGCATATTTTGGAGAGATTCTTCATC
1 GATCGAGTGGCCGGTAAATCACGGATCAAAAAGCATATTTTGGAGAGATTCTTCATC
*
588237 GATCTAGTGGCCGGTAAATCACGGATCAAA
1 GATCGAGTGGCCGGTAAATCACGGATCAAA
588267 GAGCGAGCAG
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
57 86 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (57 bp):
GATCGAGTGGCCGGTAAATCACGGATCAAAAAGCATATTTTGGAGAGATTCTTCATC
Left flanking sequence: Indices 587623 -- 588122
AAGACAGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGAA
GAAGCGGGGTAGAGTAATTGGTCAACTCATCAGGCTCATGACCTGAAGATTGCAGGTTCGAATCC
TGCCCCCGCCTAATCACTTGAGATGCTGGGGGAAGCGGCAAATCGCTTCTACCGAGTTCCCCAAC
AGTAGCTTAGCTTAGTAGCTTAACTCTTTCTACTGGCGTGGCGCTGCTGGATGTTTCTGATTAAT
AGGAAGAGGAAGAGCAAAAAGCTTATGATGAGCATCTATTTGAGTCGATCATTTCAAAGATCTAA
TTCCAGTTTTTTCTTATGTAGTGGAAACGCCTTAAAATCTGAAGTTTTACGCTTAAAGGAAGAAA
TGTTCTTGGTAAATGCAGGACTTGGGACCCCCATAATTTGTATGCAAGATGAGCCTACAGGAGTG
TCAATCAACCGAGCCACCAGGTTTGAGAATAAGGTGGGATCCCTG
Right flanking sequence: Indices 588267 -- 588766
GAGCGAGCAGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGACTGGTGAATCGCT
TCTTCTTCTTCCACGAAGATTCAGAAAAAACGGAGCTTGGATGGAACTGAACAAGATTTGGCGAA
CGAAGAAAAAAGTCAAAGGCTTTATTTTCAAAAGAAAAAAAGGAGGTTATTCTGTAGCCATCGCT
GGTTTCCTTACTTTTCTTCCATTCCGTTGTTTCAGAAAACGTAAAAAAAAAAAAAACAAAAATGA
TCGATTCACATTCACCATTGAGGGAATTAAGATTCATCCCAAAATTGAGAGAATTAAGATTCATT
CCAAAAGGCAAAAAAGGAATAGGACTAATATTGTGGTGTTCTAACAGCGGCAGATCAAAGAAGAA
CTTGATGAGCGAAATTTGCTGACGAAAAAAAAAGAGCACTTTTTCAAATTCCGAAGCCTAGCGTC
TCCTGTAACACTCTATCACCTTAATCCATTCTTTTGTTGAGGGTC
Found at i:588575 original size:27 final size:27
Alignment explanation
Indices: 588543--588597 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
588533 CACATTCACC
*
588543 ATTGAGGGAATTAAGATTCATCCCAAA
1 ATTGAGAGAATTAAGATTCATCCCAAA
*
588570 ATTGAGAGAATTAAGATTCATTCCAAA
1 ATTGAGAGAATTAAGATTCATCCCAAA
588597 A
1 A
588598 GGCAAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (27 bp):
ATTGAGAGAATTAAGATTCATCCCAAA
Left flanking sequence: Indices 588043 -- 588542
CCATAATTTGTATGCAAGATGAGCCTACAGGAGTGTCAATCAACCGAGCCACCAGGTTTGAGAAT
AAGGTGGGATCCCTGGATCGAGTGGCCGGTAAATCACGGATCAAAAAGCATATTTTGGAGAGATT
CTTCATCGATCGAGTGGCCGGTAAATCACGGATCAAAAAGCATATTTTGGAGAGATTCTTCATCG
ATCTAGTGGCCGGTAAATCACGGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTGGTGGGA
TCCACAGATGTAGTGACTGGTGAATCGCTTCTTCTTCTTCCACGAAGATTCAGAAAAAACGGAGC
TTGGATGGAACTGAACAAGATTTGGCGAACGAAGAAAAAAGTCAAAGGCTTTATTTTCAAAAGAA
AAAAAGGAGGTTATTCTGTAGCCATCGCTGGTTTCCTTACTTTTCTTCCATTCCGTTGTTTCAGA
AAACGTAAAAAAAAAAAAAACAAAAATGATCGATTCACATTCACC
Right flanking sequence: Indices 588598 -- 589097
GGCAAAAAAGGAATAGGACTAATATTGTGGTGTTCTAACAGCGGCAGATCAAAGAAGAACTTGAT
GAGCGAAATTTGCTGACGAAAAAAAAAGAGCACTTTTTCAAATTCCGAAGCCTAGCGTCTCCTGT
AACACTCTATCACCTTAATCCATTCTTTTGTTGAGGGTCTGGCACTTATTCCCTCGATCCTTTAT
TTACATAGCGAAGAAAGGCAAAAGCTCTAATTTGAAAACGATGATTTGGTTATTAACCCGAAGAG
GTGCTCGTGAACCGCTGGCGCACCTCTCCTTTCAGTCGAGTCACGCTCTTCAAGCCCTTGCCAAG
CTTGTTCTCAGAGCAGGATTGGATGCTTTCTTAAAAAAATTCTTAGCTTTTGAGTAGCACTCTCC
GTTTTTTCTTTAGTCAGACTACTAACTGAAAGCATTTTTCGCCTGTCGCCCGGCCCCTATCTTGA
ATCTTAAGTTGAGGGTGGGTGGGACCTGAGATCTTAGCTGCTGCT
Found at i:593098 original size:26 final size:26
Alignment explanation
Indices: 593068--593141 Score: 132
Period size: 26 Copynumber: 2.8 Consensus size: 26
593058 AAGGGTTGAA
593068 GAGCTCGACCG-ATAGGGAGAGGAGGG
1 GAGCTCGACCGTA-AGGGAGAGGAGGG
593094 GAGCTCGACCGTAAGGGAGAGGAGGG
1 GAGCTCGACCGTAAGGGAGAGGAGGG
593120 GAGCTCGACCGTAAGGGAGAGG
1 GAGCTCGACCGTAAGGGAGAGG
593142 GGAGAACGCG
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.49, T:0.08
Consensus pattern (26 bp):
GAGCTCGACCGTAAGGGAGAGGAGGG
Left flanking sequence: Indices 592568 -- 593067
GCTTCCAGCGCAGGAGGCCAAGCATTCTGCCAGACGTTCTGGCCTGGGAGCCCCGTTCGCCTTTG
ATACTTCAGTAGATCTTCAAAAAGAAAAAGAAAGACTTCAATGCAACCTTAACTACAACTACATT
ACGCAAGCTCCACCAAGACCTATACCTACCTATAGAGTAAATAAAGTACCCGTGATGGTGACTTT
CTAGGTTTATGGATTCAGTCAGCTAAACTCCATCAAACTCCTCAATAAATATAAACAAACAACAT
GTCGTGACCAGTGTAGCTAAGTTTCAAAAGATTCAAAGTCCCCTGTCCTTTATAGTCGTAAAAGG
CTTCTCAGAAAAGTCAGGAAGGAGGCATTCTGGTAGGAAAGCCGACCACTATATCAATATTAGGC
CTTCCTACCAGCCATATTGATATAGTAAGAAAGAAAGTACGAAAAGAAAAGAAGTACGTTAAAGT
TACGAAGTCACTTAGCCGTCTACAAAGCAAAGGGAAAGGGTTGAA
Right flanking sequence: Indices 593142 -- 593641
GGAGAACGCGGTTACTCGACTGAAAGGAGAGGTGCGGAGGCGGATGCTCGACCGATAGGGAGAGG
GGCGGAGGCGGGTACGGAGTCACGTCAGCTGTGGATATAGACTAGGCTATAAGGAACGGAGTCTT
AAACTATGGACCGAGACTACACTAAGGAACAAGGAAGCTTGACTGAGCAAAGAAATCAAGGAACG
AAGCTGCTTCTATAATAGCCCCGTTGAATAGGAGGGCGAAGGCCTTTTGAAAAAGTGTTTTTTGT
CTTGTAAATGTATTTTTTTTTATTTAGAGAGAGGGCTTCAAGTTCTTAGGAAGAGCCGTACGAGG
CAGCTCACGTACGGTTCGGGAGCCGAGCCCCACCACAGGGGCTTAGGTCAACACTTATATAATAG
CCAGTCATCAATTGGAAGCAGGCAAAATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCCGC
GACTTATTGCGACCCGCCCGAAATGCCCCTCCATACTAAGACCTT
Found at i:623567 original size:20 final size:20
Alignment explanation
Indices: 623542--623587 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
623532 AGAATAAAGA
623542 AGAATAGTATCATATATCAT
1 AGAATAGTATCATATATCAT
623562 AGAATAGTATCATATATCAT
1 AGAATAGTATCATATATCAT
623582 AGAATA
1 AGAATA
623588 AAGAATCCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.33
Consensus pattern (20 bp):
AGAATAGTATCATATATCAT
Left flanking sequence: Indices 623042 -- 623541
GAATGTGATATGATGAGATAGAATGCAATAGAAAGAAAGACACAGGGAACGGGTTAACTACTCTT
AACGGTGAAAGCGAACCCTTGAATTCCGAATTCAAGAATTCGGAATGAATCAAATCTCCCCAAGT
AGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACA
ACGGGAGATTCAATCTCATAGAGTTCAATTCCCGTTCTCAACCGATGACCAATATGAGCTCGAAG
TTTCCTTCGTAACTCCTGGAACTTCTTCGTAGTGTCTTCGTTCCATGTCTCATTTCATAGGGAAC
CTCAAAGTGGCTCTATTTCATTCTATTCCATCTTCTATTTCATTCATTTAATATCTCTTTTGGTG
TCATTGACACATTGACATAAGAGATGTCGTTTCTAGTTTATCTGTTTCGATATTCGATTTCTATA
TATATATGGAACGTTTCCAAATTATCATATATCATAGAATAAAGA
Right flanking sequence: Indices 623588 -- 624087
AAGAATCCAGAAATTGCAATTTTCTATTGCAATAGCAAAAAAAAAGGAGGTTTCTCATGATTTGA
AAGTCTTTTATACTAGGTAATCTCGTATCCTTATACATGAAGATAATCAATTCGGCCGTTGTGGT
CGGACTCTATTATGGATTTCTGACCACATTCTCCATGGGGCCCTCTTATCTCTTGCTTCTACGAA
CTTGGTTTCTAGAAGAAGGAGATGAAGAAGGAACCGAGAAAAGGGTATCAGCAACAACAGGTTTT
TTTATGGGGCAGCTCATGGTATTCATATCGACCTATTATGCGCCTCTGCATCTAGCATTGGGTAG
ATCTCATACAATAACTCTCCTAGCTCTAGCGTATTTTGGGTTTCATTTCTACTGGAACAGTAACG
AAGACTGTTTTTATTTGGATTATGGACCTACTACCAGAAATTCAATGCGTAATCTTATCATTCAA
TGTGTATTCCTGAATAATTTCATTTCTCCATTATTGAACCATTTT
Found at i:626579 original size:17 final size:17
Alignment explanation
Indices: 626557--626603 Score: 85
Period size: 17 Copynumber: 2.8 Consensus size: 17
626547 TCCTATGAAA
*
626557 GAACTGGCATTGGGAAT
1 GAACTGGCTTTGGGAAT
626574 GAACTGGCTTTGGGAAT
1 GAACTGGCTTTGGGAAT
626591 GAACTGGCTTTGG
1 GAACTGGCTTTGG
626604 CTCCTTGCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.23, C:0.13, G:0.36, T:0.28
Consensus pattern (17 bp):
GAACTGGCTTTGGGAAT
Left flanking sequence: Indices 626057 -- 626556
AATCAACTGCTTCCATCGCTCTCAAAGCGGCACATGTACTCATAATATAAATAATATAAAGATCA
GTCAAGGTTCACTAAGAGAAAGGATTGACTTGCCACGCCAAGCCAAGGGCTCTCAAAGCCGAATT
GTAAGTAATGAAGTTGGCCTTCTTGAGGTGCGATACCGACCATCCGTCGAATGAGACTCAGGCAT
AAGAAGTAGTGAATACAATTCCCCTGTTGCTCCCCAAAAGACTGATCATTCCTGGTCTGCTTTGC
TGTAAAAGCCGGGGCATTTATGGCACAGCTGCCACCAAGAATGCGTTCCTCTGGCGTTGGGGACC
CCATCCTCGGATGTGAATGCTTGGGCAGACAGACTTGACTCCCCGATTGGACAGTGGTACTCGAA
TGAGACCAAGCATCCCGGTATGAAAGAAGTAGGAAGGAAGATTCACCCGGGTAAAAGAGGATTTC
AAGGCAGTTAAGGCTTTACACACCGGGGGGTAGCATCCTATGAAA
Right flanking sequence: Indices 626604 -- 627103
CTCCTTGCCTTTGGGAATGAAATGGCTTTGGCTCGTAGCCTTTGGGAAAGAGCAGGCTTTGGCTC
GTTGCCATTGATTCTTTACCCATAGCATAAGATAAAGGGTCTTAGTCTCTTTTGCTCTTAAACCT
ATGTGACTGAAGGTGGGGGCAAGGAAAAGAGCTTCAATAGCTCGTGTCAGGTCAAGACCAGCATG
GATATTCGCTGTAGTGGGACCGCAGCTGCGAAGGAGCCGGCCTCGGGGGAGGGAGAAGCGAAGGA
GCAGGCCTCTAGGGAGGGAGAACCATTGTTGAGAGTATTGCTTGAGTTTCAGGGGATATTCGTTT
TTACAGCAGAAGTGGATAGCTCACTAGCGAAGCAGAAGGAGTTTGAATCGTGCTATATGATGATC
AGTTGGCAGTGATCCAACATGCTATTTTCATGCTTAAGAGTAGAGCTTGACAGCAATCCTTTCAC
AAGCCTAATCATCCTCTCTCTTTTCCGTCAACGGACTGGGACCAA
Found at i:626619 original size:31 final size:31
Alignment explanation
Indices: 626581--626674 Score: 134
Period size: 31 Copynumber: 3.0 Consensus size: 31
626571 AATGAACTGG
*
626581 CTTTGGGAATGAACTGGCTTTGGCTCCTTGC
1 CTTTGGGAATGAACTGGCTTTGGCTCGTTGC
* *
626612 CTTTGGGAATGAAATGGCTTTGGCTCGTAGC
1 CTTTGGGAATGAACTGGCTTTGGCTCGTTGC
* * *
626643 CTTTGGGAAAGAGCAGGCTTTGGCTCGTTGC
1 CTTTGGGAATGAACTGGCTTTGGCTCGTTGC
626674 C
1 C
626675 ATTGATTCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.16, C:0.20, G:0.32, T:0.32
Consensus pattern (31 bp):
CTTTGGGAATGAACTGGCTTTGGCTCGTTGC
Left flanking sequence: Indices 626081 -- 626580
AAGCGGCACATGTACTCATAATATAAATAATATAAAGATCAGTCAAGGTTCACTAAGAGAAAGGA
TTGACTTGCCACGCCAAGCCAAGGGCTCTCAAAGCCGAATTGTAAGTAATGAAGTTGGCCTTCTT
GAGGTGCGATACCGACCATCCGTCGAATGAGACTCAGGCATAAGAAGTAGTGAATACAATTCCCC
TGTTGCTCCCCAAAAGACTGATCATTCCTGGTCTGCTTTGCTGTAAAAGCCGGGGCATTTATGGC
ACAGCTGCCACCAAGAATGCGTTCCTCTGGCGTTGGGGACCCCATCCTCGGATGTGAATGCTTGG
GCAGACAGACTTGACTCCCCGATTGGACAGTGGTACTCGAATGAGACCAAGCATCCCGGTATGAA
AGAAGTAGGAAGGAAGATTCACCCGGGTAAAAGAGGATTTCAAGGCAGTTAAGGCTTTACACACC
GGGGGGTAGCATCCTATGAAAGAACTGGCATTGGGAATGAACTGG
Right flanking sequence: Indices 626675 -- 627174
ATTGATTCTTTACCCATAGCATAAGATAAAGGGTCTTAGTCTCTTTTGCTCTTAAACCTATGTGA
CTGAAGGTGGGGGCAAGGAAAAGAGCTTCAATAGCTCGTGTCAGGTCAAGACCAGCATGGATATT
CGCTGTAGTGGGACCGCAGCTGCGAAGGAGCCGGCCTCGGGGGAGGGAGAAGCGAAGGAGCAGGC
CTCTAGGGAGGGAGAACCATTGTTGAGAGTATTGCTTGAGTTTCAGGGGATATTCGTTTTTACAG
CAGAAGTGGATAGCTCACTAGCGAAGCAGAAGGAGTTTGAATCGTGCTATATGATGATCAGTTGG
CAGTGATCCAACATGCTATTTTCATGCTTAAGAGTAGAGCTTGACAGCAATCCTTTCACAAGCCT
AATCATCCTCTCTCTTTTCCGTCAACGGACTGGGACCAAAGCTCTTTCACAAACGATATGACGCT
CTCGTGCGATGCGATATGACGCTCTCGTGCGATGCGATATGACGC
Found at i:626862 original size:30 final size:30
Alignment explanation
Indices: 626826--626885 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
626816 GACCGCAGCT
* *
626826 GCGAAGGAGCCGGCCTCGGGGGAGGGAGAA
1 GCGAAGGAGCAGGCCTCGAGGGAGGGAGAA
*
626856 GCGAAGGAGCAGGCCTCTAGGGAGGGAGAA
1 GCGAAGGAGCAGGCCTCGAGGGAGGGAGAA
626886 CCATTGTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.50, T:0.05
Consensus pattern (30 bp):
GCGAAGGAGCAGGCCTCGAGGGAGGGAGAA
Left flanking sequence: Indices 626326 -- 626825
CGGGGCATTTATGGCACAGCTGCCACCAAGAATGCGTTCCTCTGGCGTTGGGGACCCCATCCTCG
GATGTGAATGCTTGGGCAGACAGACTTGACTCCCCGATTGGACAGTGGTACTCGAATGAGACCAA
GCATCCCGGTATGAAAGAAGTAGGAAGGAAGATTCACCCGGGTAAAAGAGGATTTCAAGGCAGTT
AAGGCTTTACACACCGGGGGGTAGCATCCTATGAAAGAACTGGCATTGGGAATGAACTGGCTTTG
GGAATGAACTGGCTTTGGCTCCTTGCCTTTGGGAATGAAATGGCTTTGGCTCGTAGCCTTTGGGA
AAGAGCAGGCTTTGGCTCGTTGCCATTGATTCTTTACCCATAGCATAAGATAAAGGGTCTTAGTC
TCTTTTGCTCTTAAACCTATGTGACTGAAGGTGGGGGCAAGGAAAAGAGCTTCAATAGCTCGTGT
CAGGTCAAGACCAGCATGGATATTCGCTGTAGTGGGACCGCAGCT
Right flanking sequence: Indices 626886 -- 627385
CCATTGTTGAGAGTATTGCTTGAGTTTCAGGGGATATTCGTTTTTACAGCAGAAGTGGATAGCTC
ACTAGCGAAGCAGAAGGAGTTTGAATCGTGCTATATGATGATCAGTTGGCAGTGATCCAACATGC
TATTTTCATGCTTAAGAGTAGAGCTTGACAGCAATCCTTTCACAAGCCTAATCATCCTCTCTCTT
TTCCGTCAACGGACTGGGACCAAAGCTCTTTCACAAACGATATGACGCTCTCGTGCGATGCGATA
TGACGCTCTCGTGCGATGCGATATGACGCTCTCGTGCGATGCGATATGACGCTCTCGTGCTAAGA
TAAAGGTAGACTTGCTCCTTCAGGGAAATAGAGAGAAGAAAAGCGGGTGACAGAGACAAGAGCAG
CGAAGGGCGGTCCGCTTGATCTCTCATTTTCACAATAGTATAGGTCTAAGCGAGAATATGTGCCT
GTGGGAAAGTCTTCCTGCGCGTGCTTTCTTCTTTCAATACCCTAC
Found at i:627145 original size:23 final size:23
Alignment explanation
Indices: 627118--627205 Score: 176
Period size: 23 Copynumber: 3.8 Consensus size: 23
627108 CTTTCACAAA
627118 CGATATGACGCTCTCGTGCGATG
1 CGATATGACGCTCTCGTGCGATG
627141 CGATATGACGCTCTCGTGCGATG
1 CGATATGACGCTCTCGTGCGATG
627164 CGATATGACGCTCTCGTGCGATG
1 CGATATGACGCTCTCGTGCGATG
627187 CGATATGACGCTCTCGTGC
1 CGATATGACGCTCTCGTGC
627206 TAAGATAAAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.26
Consensus pattern (23 bp):
CGATATGACGCTCTCGTGCGATG
Left flanking sequence: Indices 626618 -- 627117
GAATGAAATGGCTTTGGCTCGTAGCCTTTGGGAAAGAGCAGGCTTTGGCTCGTTGCCATTGATTC
TTTACCCATAGCATAAGATAAAGGGTCTTAGTCTCTTTTGCTCTTAAACCTATGTGACTGAAGGT
GGGGGCAAGGAAAAGAGCTTCAATAGCTCGTGTCAGGTCAAGACCAGCATGGATATTCGCTGTAG
TGGGACCGCAGCTGCGAAGGAGCCGGCCTCGGGGGAGGGAGAAGCGAAGGAGCAGGCCTCTAGGG
AGGGAGAACCATTGTTGAGAGTATTGCTTGAGTTTCAGGGGATATTCGTTTTTACAGCAGAAGTG
GATAGCTCACTAGCGAAGCAGAAGGAGTTTGAATCGTGCTATATGATGATCAGTTGGCAGTGATC
CAACATGCTATTTTCATGCTTAAGAGTAGAGCTTGACAGCAATCCTTTCACAAGCCTAATCATCC
TCTCTCTTTTCCGTCAACGGACTGGGACCAAAGCTCTTTCACAAA
Right flanking sequence: Indices 627206 -- 627705
TAAGATAAAGGTAGACTTGCTCCTTCAGGGAAATAGAGAGAAGAAAAGCGGGTGACAGAGACAAG
AGCAGCGAAGGGCGGTCCGCTTGATCTCTCATTTTCACAATAGTATAGGTCTAAGCGAGAATATG
TGCCTGTGGGAAAGTCTTCCTGCGCGTGCTTTCTTCTTTCAATACCCTACATGGAACTACTCGAT
CTTTCCAATCCATCCCGAGAGTGAAGCGAGCAAGACCGATCAATATCCGAACGGAACGGATTCGA
ACTTCTCCTAGAAGAGTTTCCGGTGCGAAATGAAATTCATACATAGGAGATATATGAGTAATTCA
AAGGATAAATATAAAGATTTGATAGGATTAAGGTAGCGGTAGTATATTTGAAGAGGAACTAGCTT
TGACTTTCGCTATCTGATTTGAAGTGCGAAAGCTCTTTCAAAGAATAGCTGTTAGAGAAGAGATA
GATCTTACGTAAGCCAAAGGCTATTTAAAGAGCTTCTATTTCACC
Found at i:641581 original size:29 final size:29
Alignment explanation
Indices: 641539--641598 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
641529 TAGTAGTTCC
641539 ATTGATTTACTACTATATATAGACTATAT
1 ATTGATTTACTACTATATATAGACTATAT
641568 ATTGATTTACTACTATATATAGACTATAT
1 ATTGATTTACTACTATATATAGACTATAT
641597 AT
1 AT
641599 AGGGTTGCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (29 bp):
ATTGATTTACTACTATATATAGACTATAT
Left flanking sequence: Indices 641039 -- 641538
CCGCGGAAACAGCGAATATCATGAAAGCCCTCACCTATTTCAAACTTGCCTTACTGTCTTAACTT
CTCTTTTTTGTTTTGCAAAAAGCTTAGAGTGGAACAAATCTGCTCTTATCTTTATTTGAGGCTTG
ATTCGCGGATTTCCCTTCCAACGGGGTTAGCAAACAGTCCAACAGCTACCCTGAGAGGGCACTCA
CTTTATCAATCAATGATCACAAAAACAGGCTTCCCAAAGATCTATATCCCTATCCCTATATAAAT
ATAACACTTGACAGATTCCCTCTAAAGGCTAATGGTACTGCCTGGAGAGAAAGCATACTCTATAT
TGGAAGAAAGAAAGTCTTACCTCGGGATGGCGAAGGCCTTGACTTTAGGATAAGACTGACTGTTA
TTAGCTCGTTACGCTCTTTAGCTTTAGCCCGTTTAGATCGTTATACATGCTATTAATAATATTAA
TAAATAGAATAAGCAGGCGCTTAGCCCATTATCTGTAGTAGTTCC
Right flanking sequence: Indices 641599 -- 642098
AGGGTTGCCCTTTCTTCTACAAGGAGGTTGACTCTACAGAAGGAGGGTGCCTTAGGAAGAAATGG
AAAAGCCCGAAATGGCACCAGAACTTATATCCTAAGTCTTAAAGTTGAAAGTCAAGGTCGCCTCA
GAAAGAGAATTGCATAGTTCCAGTGGCTGTCTTTCCTGAGGGCCTCTCATCAACTAGCTATCGAA
TCGAAGAGGAAGGAAGAATGTCAACTATATCGACAAGTCTGAGCTCATTCACGAAGAAGAGAGAC
TGGGCTCAGACTTACTGGCACAAGGGTCAACCCTAAGGGAAAGGTCAAGGCTTAGGCTGCTGAGT
TACTTCTCCTCAGTCTAGTATTCTTGGCGATAGAATCCTTAAAGGAAGGGCGTTTAGCTGTACGC
AGGTTTGGAAATCAACTATCACCGACTTTCAGTTCGATCCCATTCTCCATCTTAATAATAGAATA
TAAGGCTTCCCTACAATTCAAGAGCGGACACTTCCTCATTCCAGG
Found at i:665630 original size:16 final size:16
Alignment explanation
Indices: 665609--665642 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
665599 TAACCCCACC
*
665609 ATTAACTATTTCATTT
1 ATTAACTACTTCATTT
665625 ATTAACTACTTCATTT
1 ATTAACTACTTCATTT
665641 AT
1 AT
665643 GAATTTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTAACTACTTCATTT
Left flanking sequence: Indices 665109 -- 665608
AGAAACTCAACGCCACTATTCTTGAACAACTTGGAGTCGGGCCTTCTTTTCGCACTATTACGGAT
ACGAAAAGAATGGGAAAAGTTGGATTCAATTGTCAACTGCTCCTATCGGAAATAGGATTGACTGC
GGATTCGAGTCATAGCTCATGGTTTCATAAAAGCGTATGATTTTCCCGATCTAAATAAAGCAGGT
TTTACATGAAGAAGATTTGGCTCAGCATGTTCTATTCGATACGGGTAGGAGAAGACCCCGACTCG
GTATTCTTAAAAAACTAGAGAAATCAGAACCAAGTCAAGATGATATGGATCAACCCCTTCTTATT
GCGCCAAAGATCTTACCATTTCCGAAGGAACTGGAGTTACATCTCTTTTCCATTTCCATCCAAGA
GTTCTTATGTGTTTCCGCGCCCCTTTGAGACCCCGAAAAATGGACAAATTCCTTTTCTTAGGAAC
ACGTACAAGATTCGTCACTACAAAAAGGATAATGGTAACCCCACC
Right flanking sequence: Indices 665643 -- 666142
GAATTTCATAGTAATAGAAAGAAAATACATGTATATCCTACCGAGACAGAATTTGTAACTTGCTA
TCCTCTTGCCTAGCCGGCAAAGATTTACCTCCGTGGAAAGGATGATTCATTCGGATCGACATGAG
AGTCCAACTACATTGCATTGTCAGAATCCATGTTGTATATTTGAAAGAGGCGGACCTCCTTGCTT
CTCTCATGGTACAATCTTCTTCTCGCCGAGCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAG
GACTGGTGCCAATAGTTCATCACGGAAGAAAGGACTCACTGAGCCGGGATCACTAACTAATACTA
ATCTAATACTAGATTACTAATAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCC
GTTGCTACCGCGTGCCTTACGCAATCGATCGGATCATATAGATATCCTTTCAACACAACATAGGT
CATCGAAAGGATCTCGGAGACCCACTAAAGCACGAAAGCCAGGAT
Found at i:672044 original size:33 final size:32
Alignment explanation
Indices: 671966--672053 Score: 117
Period size: 33 Copynumber: 2.8 Consensus size: 32
671956 GCGCAGCTAA
*
671966 GATAGGGAGAGAG-ACGGAGGCGGGGCTCGACC
1 GATAGGGAGAG-GTGCGGAGGCGGGGCTCGACC
* *
671998 GA-AAGGAGAGGTGCGGAGGCGGATGCTCGACC
1 GATAGGGAGAGGTGCGGAGGCGG-GGCTCGACC
672030 GATAGGGAGAGGTGCGGAGGCGGG
1 GATAGGGAGAGGTGCGGAGGCGGG
672054 CGCATCCGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
30 1 0.02
31 16 0.33
32 12 0.25
33 19 0.40
ACGTcount: A:0.24, C:0.16, G:0.52, T:0.08
Consensus pattern (32 bp):
GATAGGGAGAGGTGCGGAGGCGGGGCTCGACC
Left flanking sequence: Indices 671466 -- 671965
GTCCAATGTCCCCGTGTGTGATACGCGTACGAGGGACAACAAGACAGCGGGGAGTCTTAGTGACG
GGGAAGAGCCGTGCATGAATTTGGAATATTTAAGAGCTTCTCCCTGACATCCACCCAAAGGAGTA
CCGTCAGCCCCCAAAAGGGGTACCATAACAGCCACCCCTGCTGGCTGACTGATTGCAGGGAGCGC
AGGAAGCTAAGGCTCCATGTTCGGTTCTGGTAAAGAGGGCGGTGGGTAGGCTTGGAAGGAAAGTC
AGAGTGGGGGCTTTTATAACCCACCACGGTTAGGGCTGGAGTAATGTTTGAAGGTGCTCATGATG
ATAGTCCTGTTCCACCAAGTGATTCAACCATGATTCCAGACATGGGGAGGGAGAAAGGGGGGCGT
TAGCGGCTCGACCGGGAGTGAAAGAAAGCTCGACCGTAAGGGAGAGGGTGAAGCTCGAGTGCAAC
GAGAGGTTTGCAGAGCTCTACCGTAAGGTAGAGGGGCGCAGCTAA
Right flanking sequence: Indices 672054 -- 672553
CGCATCCGTTTTCTTGCTCGTTTCAAGAGCGTAACTCTACTATCAAACTAAGATATAGTTAAAAG
GGCCCATTTTTGATTCAATTCATGAATTAGTCCAATAGAGTTCACTGCATTTAGAAATATATATA
TTATTATAATAATATAGTATATCATTCGTGTCTCTGTTACAACACGGCGAAACGAAATAGTTCGA
ATGAAATCCAATGATAAAAAAGAATATAAGAATTTTTAGGCTGTACGGCTAATTTTCCTGGGATT
GTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTC
CCGATCTAGGATCCGATGAATCGATCAATTCATCTCTCCATTTTCTGTGAAGAGGGAAGATAAAG
AGTCGAATCTAATTCCCAGCAGGAGTCTCCTTTTTTCGTTTCGCATTTCTCATCGGACAAAGAAA
GTCAAGGTGGCTTGCTTCCAATAACTAGTACCGATTGATGGGGGA
Done.