Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_050067
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 460333
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:3128 original size:20 final size:20
Alignment explanation
Indices: 3086--3128 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
3076 CAATGGGATA
* * *
3086 GAATTCCTTACAGAAGAGTT
1 GAATTCCGTACAGAAAAGAT
*
3106 GAATTCCGTACATAAAAGAT
1 GAATTCCGTACAGAAAAGAT
3126 GAA
1 GAA
3129 ATCCTATCAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (20 bp):
GAATTCCGTACAGAAAAGAT
Left flanking sequence: Indices 2586 -- 3085
TGTACGGTAGTTAGGAGCTCTTTCTCTCGCGGTAGTGCGCCCTCCCTATTTTGAGTGGGTGCTCG
CAAGGTCAAAGTCAAAAATGAGATTCTTTCATTAATACAGGGGTAGGGTAAAGAGTTTCAGTGAT
TTACACCTCGAAGTAGAGTGTGTAAATACCGGATGCATAGGTTGAGTCATTCGCTAAACAACTAT
TTAGTTGGGCGATCAACCAGGTGCTCCTACCCAAGCGGACTAATGAATGCCAACAGGAAGAACTC
ACTTTCCTATCGTTCAGTAGGAGATCCCTTCTTGTTTGTGGCTGGAAAATGATGACCTGTTGCTA
ATGGGGAGAGATCTTTCATTAGGGTTTGATGCTCCTCAATGGGGATCCCCAGAATAATAGCTTGC
TTGTGGAACCCTTTGTTTAGTATTTGTTTGGGGGTATTCTTGTACAGCTTGGCCCTTTCCCTGGC
GCACTGCCATCGAATCTACTAGTCCTCCTCAAAGCCAATGGGATA
Right flanking sequence: Indices 3129 -- 3628
ATCCTATCAAAAAACACGGGAAAACGCACAATGATAGTTATATTCGAGTAGAATTCCTTACAGAA
GAGTTGAATTCCGTACATAAAAGATGAAATCCTATCAAAAAACACGGGAAAACGCAAGTTTTGTC
TTTCGTTTCTCACTTCACCGAGTGAAAATCGAATTACAATCAAAAAACACGGGAAAACGCAAAAT
GAGAGTTTCGTTTCTCACTTCACCGAGTGAAAATTGAATTCCTATCAAAAAACACGGGAAAACGC
AAGAAAAGTCACTATCAAATGCAAGAAGAGTTCAAATAGAATTCCTTGCGAATTCGAGTTTTCCG
TGACAATCCAGAAATGTCATGGTTCCTCATATATGCATTCCATCAAATTAGTGCATAATTTGACG
ATTTCGATTTTCTTTCTCCGATCCAGTTCGTTCTGTCTTCTTTCCGACGGATCAGCCCTATGAGA
TCGAGAAGGGCTTCCGATTCTGTATGACAACAGAACGAGCATTCG
Found at i:3221 original size:20 final size:20
Alignment explanation
Indices: 3179--3221 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
3169 TATTCGAGTA
* * *
3179 GAATTCCTTACAGAAGAGTT
1 GAATTCCGTACAGAAAAGAT
*
3199 GAATTCCGTACATAAAAGAT
1 GAATTCCGTACAGAAAAGAT
3219 GAA
1 GAA
3222 ATCCTATCAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (20 bp):
GAATTCCGTACAGAAAAGAT
Left flanking sequence: Indices 2679 -- 3178
TCATTAATACAGGGGTAGGGTAAAGAGTTTCAGTGATTTACACCTCGAAGTAGAGTGTGTAAATA
CCGGATGCATAGGTTGAGTCATTCGCTAAACAACTATTTAGTTGGGCGATCAACCAGGTGCTCCT
ACCCAAGCGGACTAATGAATGCCAACAGGAAGAACTCACTTTCCTATCGTTCAGTAGGAGATCCC
TTCTTGTTTGTGGCTGGAAAATGATGACCTGTTGCTAATGGGGAGAGATCTTTCATTAGGGTTTG
ATGCTCCTCAATGGGGATCCCCAGAATAATAGCTTGCTTGTGGAACCCTTTGTTTAGTATTTGTT
TGGGGGTATTCTTGTACAGCTTGGCCCTTTCCCTGGCGCACTGCCATCGAATCTACTAGTCCTCC
TCAAAGCCAATGGGATAGAATTCCTTACAGAAGAGTTGAATTCCGTACATAAAAGATGAAATCCT
ATCAAAAAACACGGGAAAACGCACAATGATAGTTATATTCGAGTA
Right flanking sequence: Indices 3222 -- 3721
ATCCTATCAAAAAACACGGGAAAACGCAAGTTTTGTCTTTCGTTTCTCACTTCACCGAGTGAAAA
TCGAATTACAATCAAAAAACACGGGAAAACGCAAAATGAGAGTTTCGTTTCTCACTTCACCGAGT
GAAAATTGAATTCCTATCAAAAAACACGGGAAAACGCAAGAAAAGTCACTATCAAATGCAAGAAG
AGTTCAAATAGAATTCCTTGCGAATTCGAGTTTTCCGTGACAATCCAGAAATGTCATGGTTCCTC
ATATATGCATTCCATCAAATTAGTGCATAATTTGACGATTTCGATTTTCTTTCTCCGATCCAGTT
CGTTCTGTCTTCTTTCCGACGGATCAGCCCTATGAGATCGAGAAGGGCTTCCGATTCTGTATGAC
AACAGAACGAGCATTCGCTGGACGGCCAAAGATTGAATGAAATGTTGGCATGGGGTTTCGGCAAT
TTCAATTCCATTTTCAGTCTTTTTCAATTGAAATTGATCTTGTAT
Found at i:3340 original size:70 final size:70
Alignment explanation
Indices: 3227--3390 Score: 247
Period size: 70 Copynumber: 2.3 Consensus size: 70
3217 ATGAAATCCT
** ** *
3227 ATCAAAAAACACGGGAAAACGCAAGTTTTGTCTTTCGTTTCTCACTTCACCGAGTGAAAATCGAA
1 ATCAAAAAACACGGGAAAACGCAAAATGAGACTTTCGTTTCTCACTTCACCGAGTGAAAATCGAA
3292 TTACA
66 TTACA
* *
3297 ATCAAAAAACACGGGAAAACGCAAAATGAGAGTTTCGTTTCTCACTTCACCGAGTGAAAATTGAA
1 ATCAAAAAACACGGGAAAACGCAAAATGAGACTTTCGTTTCTCACTTCACCGAGTGAAAATCGAA
* *
3362 TTCCT
66 TTACA
3367 ATCAAAAAACACGGGAAAACGCAA
1 ATCAAAAAACACGGGAAAACGCAA
3391 GAAAAGTCAC
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 85 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (70 bp):
ATCAAAAAACACGGGAAAACGCAAAATGAGACTTTCGTTTCTCACTTCACCGAGTGAAAATCGAA
TTACA
Left flanking sequence: Indices 2727 -- 3226
AGTAGAGTGTGTAAATACCGGATGCATAGGTTGAGTCATTCGCTAAACAACTATTTAGTTGGGCG
ATCAACCAGGTGCTCCTACCCAAGCGGACTAATGAATGCCAACAGGAAGAACTCACTTTCCTATC
GTTCAGTAGGAGATCCCTTCTTGTTTGTGGCTGGAAAATGATGACCTGTTGCTAATGGGGAGAGA
TCTTTCATTAGGGTTTGATGCTCCTCAATGGGGATCCCCAGAATAATAGCTTGCTTGTGGAACCC
TTTGTTTAGTATTTGTTTGGGGGTATTCTTGTACAGCTTGGCCCTTTCCCTGGCGCACTGCCATC
GAATCTACTAGTCCTCCTCAAAGCCAATGGGATAGAATTCCTTACAGAAGAGTTGAATTCCGTAC
ATAAAAGATGAAATCCTATCAAAAAACACGGGAAAACGCACAATGATAGTTATATTCGAGTAGAA
TTCCTTACAGAAGAGTTGAATTCCGTACATAAAAGATGAAATCCT
Right flanking sequence: Indices 3391 -- 3890
GAAAAGTCACTATCAAATGCAAGAAGAGTTCAAATAGAATTCCTTGCGAATTCGAGTTTTCCGTG
ACAATCCAGAAATGTCATGGTTCCTCATATATGCATTCCATCAAATTAGTGCATAATTTGACGAT
TTCGATTTTCTTTCTCCGATCCAGTTCGTTCTGTCTTCTTTCCGACGGATCAGCCCTATGAGATC
GAGAAGGGCTTCCGATTCTGTATGACAACAGAACGAGCATTCGCTGGACGGCCAAAGATTGAATG
AAATGTTGGCATGGGGTTTCGGCAATTTCAATTCCATTTTCAGTCTTTTTCAATTGAAATTGATC
TTGTATACGCCGGTTGAAGCAGACGTTGGAGCATCCAAACGAACCAGCAGAGGCAGCTGTGGCAG
AGACAACAGCAAAAGCACTAGTCTCCGTTGATCACCTATCAGCAGGGGAAGCAGCATAGGTGGCA
GGAACTTACTAGGGTTTAGATACCAATTCGAAGAGCATTCGTTTA
Found at i:72765 original size:24 final size:23
Alignment explanation
Indices: 72737--72819 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 23
72727 ATAAAAAAGA
*
72737 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCCAAGTCACTTC-TTTCTT
*
72761 TTTGTCCAAGTTACTTC-TT-TT
1 TTTGTCCAAGTCACTTCTTTCTT
72782 TTTGTCCAAGT---TTCTTCTCTT
1 TTTGTCCAAGTCACTTCTT-TCTT
* *
72803 TTTGTCTAACTCACTTC
1 TTTGTCCAAGTCACTTC
72820 CTTTTTTCTT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
18 3 0.06
19 1 0.02
20 1 0.02
21 24 0.49
22 2 0.04
24 18 0.37
ACGTcount: A:0.13, C:0.23, G:0.10, T:0.54
Consensus pattern (23 bp):
TTTGTCCAAGTCACTTCTTTCTT
Left flanking sequence: Indices 72237 -- 72736
AATGATTGGGAAGATCCAAAACAAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGT
CAATCAATATAGATTGATCCGAAATCTGATTCAAATCCAATATAACACCTATGGGTACATAAGAA
ATGTATTGAATCGATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGG
GATCAAATAGGAAATGATACTCTTAATCATAGAACTATAATGAAATATACGATCAACCAACATTT
ATCAAATTTGAAAAAGGGTCAGAAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAACCGAGA
GATCCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAG
GAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGATAAAAAAGA
Right flanking sequence: Indices 72820 -- 73319
CTTTTTTCTTTGTGAGTTTCGGGAATATCCCCATTCATAGGTCCGAGATCCACATCTATGAATTG
AAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTT
GAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATAGAAATTCTTGATCA
GAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGGTTGACTCATTCCATACTAGA
AATAATCGCAGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGA
CAATTGGCTAAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAA
CTCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTCCCTTTT
TATGTGGATTATGTGGAAAAGGCCCGTATCAATAATTATGATTTT
Found at i:72785 original size:21 final size:21
Alignment explanation
Indices: 72759--72826 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
72749 ACTTCGTTTC
72759 TTTTTGTCCAAGTTACTTCTT
1 TTTTTGTCCAAGTTACTTCTT
* *
72780 TTTTTGTCCAAGTTTCTTCTC
1 TTTTTGTCCAAGTTACTTCTT
* * * *
72801 TTTTTGTCTAACTCACTTCCT
1 TTTTTGTCCAAGTTACTTCTT
72822 TTTTT
1 TTTTT
72827 CTTTGTGAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.12, C:0.22, G:0.07, T:0.59
Consensus pattern (21 bp):
TTTTTGTCCAAGTTACTTCTT
Left flanking sequence: Indices 72259 -- 72758
AAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCCGA
AATCTGATTCAAATCCAATATAACACCTATGGGTACATAAGAAATGTATTGAATCGATTCTTTTT
AATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATACTC
TTAATCATAGAACTATAATGAAATATACGATCAACCAACATTTATCAAATTTGAAAAAGGGTCAG
AAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAACCGAGAGATCCATGAATCGGGATCCTAA
TGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGA
AGAGCCATTTTCATTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATTGG
TCTGAGGTTATCGATAAAAAAGATTTGTCTAAGTCACTTCGTTTC
Right flanking sequence: Indices 72827 -- 73326
CTTTGTGAGTTTCGGGAATATCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTC
CGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAA
TTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATAGAAATTCTTGATCAGAACAAT
ATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGGTTGACTCATTCCATACTAGAAATAATC
GCAGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGG
CTAAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAACTCGACT
TCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTCCCTTTTTATGTGG
ATTATGTGGAAAAGGCCCGTATCAATAATTATGATTTTACGTATG
Found at i:75191 original size:21 final size:18
Alignment explanation
Indices: 75146--75202 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
75136 AGGGTTTTCT
75146 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
75164 TATTGATGATAGTGGCGA
1 TATTGATGATAGTGACGA
*
75182 TATTTATGATAGTGACGA
1 TATTGATGATAGTGACGA
75200 TAT
1 TAT
75203 CGACCGTGAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Left flanking sequence: Indices 74646 -- 75145
GTCTCGAACAGTGATTCGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAAC
GACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATG
ACTCTGGTTATCAAATGATTGAACAACCGGGAGTAATTTACTTACGATACTTAGTTGACATTCAT
AAAAAGTATCTAATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGACGGACATTCCTTGC
TCATTATCAGACAATCACTTATTCACAAACCTCGTGTGGGGCTAATAGTTTTCATTTCCCATCTC
ATGGAAAACCCTTTTCGCTCCGCTTAGCCCTATCCCCCTCTAGGGGTATTTTAGTGATAGGTTCT
ATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTAC
AGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAGGGTTTTCT
Right flanking sequence: Indices 75203 -- 75702
CGACCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCTAACTATGGATATGA
TGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGC
ATAATATGGATTCCAAACATTCATGATCCGGATGTGAATGAGTCAAAGCCAAAAATCAGATAAAT
AGAAGGAAAGGAGATCGGAAAGATACGTGGACGACTTGACTCTCGTATAGGTCGGATGTTTCCGT
GAACAGTAAGCAGCGGATCTCCCCTTATTTTGGGAAAGCAGGTGGCCGCGTGTGAATTCTTTCAA
GGCAAGGGGCCTGATCGACATTCTTGTTTACTCTGATCCGGTCGAGGTGGTTTTCGTTTACCAGC
GCGTAGGTGGTCTAAGTTCCTATGACCGAGTCTTTCTGGCCCCTGTGAACATCTTTTCTTAATGT
ATTAAAGAGGGCCTCTCTAACCGGTGAAAAGTGGTGGGTGTCCAC
Found at i:101602 original size:18 final size:18
Alignment explanation
Indices: 101576--101611 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
101566 TCGGGACTTC
*
101576 TCTTTTCTTCTTGCTTAT
1 TCTTCTCTTCTTGCTTAT
101594 TCTTCTCTTCTTGCTTAT
1 TCTTCTCTTCTTGCTTAT
101612 CACCGACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.25, G:0.06, T:0.64
Consensus pattern (18 bp):
TCTTCTCTTCTTGCTTAT
Left flanking sequence: Indices 101076 -- 101575
AAGCCTTTTTCGATTTCGAGGCTTTCACCCTGAAAACGGAACTAGACCCCGTTCCCTCTATGTCC
ATTCAATCTGAATCTTGCAGCATTCATGCACAGTAAGACCAGGAATGCCCTATTTGATCTCTTCC
TCTCCCATCGAGGCTTTCACCCGCACTAGCACTAGTATATGGTGATATCCAACTCTCAAGCCCGA
ACACAAAAAGCCCCTTCATTATTATTAGATAAAGAAAGGGTAAAGGAGAAACAATAGGCCAGGAG
CGGAAACGTCGAATAGGAAAGACTTGGTATATAATCCGTGCCTTCGTTCTGGCTATAGTCCATTA
GCAAGCGAGTAGGGGAACCGTTCCTTCCGTTCAGTAAGGGAATACAAGCATTACGGGGAGTTTTT
TAATAGGAATATATGACTCACTCTTCCCAACTCAAGTCAAGCGAAGCGTAGTGAGGAAGGAGGGG
AAGAACTACTATAGAAAGGCTAAGTGAAGTACTTCTCGGGACTTC
Right flanking sequence: Indices 101612 -- 102111
CACCGACTTTCCGAGCGTAGTCTTTAGTAGGGAGGGCCATTATCGCAGGGAGTAGGAACATGACA
AACCATTAGAATGCATTCTCGCAGGAAGTAGCATACTCATCGAGCTTTCGTTCCTTTCGTCTCGA
AGGCCGGTTCAGTAAGAGTGAAAATCCTTCTAACTGTCCCGTGCATTAAGGTGGCATGTCTGACT
CCGGGCCAGCAGTGAACGAAGTGTTAAAGTAGAGAAAGCTAGCGTTCCGTACTCAGCCGGCCAAG
CAAAACTCCAGCTAAGCTAATAGCTCTAATTGTGGGATATCTAAAAAAGATGCTCTTGTTTGTGG
CCTTCCTTCTCTTCTGGTTAATCCTATGAATCGGTAATCGGATCGGCAACAGGTAACAGGCTTTA
TCTGGGTTCAATTCCTTTCTTCCTACCCGGACCTGCATTGGATTAATTCCTTCGATGCTTGCTCG
GAGCGGGGTCGACTCAATATCGAGAGACTCAGCCACCGAGGACTT
Found at i:116645 original size:17 final size:17
Alignment explanation
Indices: 116623--116656 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
116613 ATAAAGGCCG
116623 ATCTTATTTATTAAGAC
1 ATCTTATTTATTAAGAC
116640 ATCTTATTTATTAAGAC
1 ATCTTATTTATTAAGAC
116657 CATAAACCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
ATCTTATTTATTAAGAC
Left flanking sequence: Indices 116123 -- 116622
TAGGGCCATTGAACCGGCCCAACCAGCAACTAGAGCTGTATGCATTATATGAACAGAAAGCAAAC
GACCGGGATCATTCAATACAACGGTATGAACACGATACCAAGGCAACCCCATGGAAATACCCCTT
TATCAACGAAAAATAGACACTATGTAACTTTATTGCACTGAAAAAAAACTATGCTATGGACCTCC
CCTTTTGAGGGGATTATCTTGGCGAAAGGATTAATATTTGGTCTATTCTTTTAGTAATAATGGAA
CAATTCTATTCTATTCGTAGGAACAAAAAGAAGCAGATCTATTCTATACTCGATAAGTACCAATA
CGCAATGGTGGATGGGAATTGATCCTATTTTATATGAGTGAATGTATACATATTTGTTCATCATT
CAAAAGACCTATTCGGAAGAATTTTCCTTTATTCATTCTGTTTTCCTTTTTTATGAACTTATTCA
ATCTATGTATAAAATATGCTAAAAGATAAAATCTGATAAAGGCCG
Right flanking sequence: Indices 116657 -- 117156
CATAAACCCGTTGTTACGCTTCCACATCAAAGTGAGCTATAGTACTAAATTCTTTTTTCTTTGCT
TTAATGCCTATTGGTGTTCAAAAAGTACCTTTTCGAAGTCCTGGAGAGGAAGATGCATCGTGGGT
TGACGTATAGTGCGACTTGTCAGATATATTGGGTCATATGGTATTTCCCCGTTCTCTCCCCCGAT
CGAGATATCCTCTCTTTCGCCCAAGACAGATTGATTTCATTATCAAAAATTTGGAGCGTGAAGTG
CAATTAGATCTATTTTTTGGGGGGTATCCAGATTAATATTATCAATTAGAATAATTGATGGTTTT
CTTGGTTGTACTAATAAAATGAAGTATCCAGGCTCCGCTTAGAAAAAACTCAATTTGGAATCTAT
CTATTCTATGATTACTACTTGTATCATATTCTATTTATAAATAGCATTGATTGATATAAAACTGT
TAATAAATCGAGTAATATGATGATGGTTGAATATTTGGTTAAAAG
Found at i:123138 original size:17 final size:17
Alignment explanation
Indices: 123113--123159 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
123103 TATTTATTAA
* *
123113 AAATATATTTAATATAT
1 AAATCTATTAAATATAT
123130 AAATCTATTAAATATAT
1 AAATCTATTAAATATAT
123147 AAATCTATTAAAT
1 AAATCTATTAAAT
123160 GGATTCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (17 bp):
AAATCTATTAAATATAT
Left flanking sequence: Indices 122613 -- 123112
CAAAAATTGGAAATTGAATTGACAAGGTAAAGAACTCTACAATATCAATATATAGAATATATGGA
ATACCACAGAAATCTTTCTTTTTTTGAATTGTGCATTCAATTAATTTCAATCAAATAAGTCGTAT
CTTGTTCAGACCGATAAATAGAGCTGAGGTTATAGTTAAAACTGCTAGTAGAAAACCGAAATAAC
TAGTGATAGTAGGCATGACGAGGCTAAATGAAATACGTTATTTTTATCCCCCTAAGTTTCCATTT
TTGAAAGATACGCGGATGGATAAGTAAAAAATACCAATATATATTCAATTGAAAGTTTTTGATTC
ATCTATTATTAGAATTATAGATGATACTAACAAAAATCTTGTGACATAGGTAAGAAATAAATTCG
TCATCTGTCTCTCGATCCCGCGATTCGGAATCAACGGATTCATTGGACAACTCAAGAGTTGTAAA
AACTAATATTCTTATTATTATTATAAACAATAATTTATTTATTAA
Right flanking sequence: Indices 123160 -- 123659
GGATTCTAAATAATTAGAAAGACAAAAAATAAAAAAAAGAAAGAGAGAATCACTCGATTCCCTCT
TTCTGGATGACACAATCACAATATAACAATAATATATTTCTATCGATCAGATATCACACTTTAAT
ATACTAATAGAATTTTCTCTAGTTATTTTATTTTAATAGAAAAGAAAATTTATAAATTAATTGAA
TTTGTTCACTACTTATGTAATAAATCGAAAAAAAGGTTCTGAAAACCGGGAAAAATTGAAACCAA
GAATAGGGATCTTTGACGAACTTGATGTTGATAAATCCAGAGATTTAGAAATTCATTTCGGACAA
TTGAACCTTCTCAAACTGTTTCTTTTTAAGAACTAAAAAGATTTGTGCCAAAATAACAGATGCAA
AAAAGAACAAAAGGCCTTGGACACGTAATGGATCTTGAAGGACTATTTCCGCATCTCCCTGACCA
AACCCTCCCACATTAGGATTACTCGTTAACGGTTGATCAAGTTTG
Found at i:135609 original size:27 final size:27
Alignment explanation
Indices: 135571--135626 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
135561 TCGGTAAAGT
*
135571 GGCTTTGCTCCTTCCCCTCTCCCTATC
1 GGCTTCGCTCCTTCCCCTCTCCCTATC
135598 GGCTTCGCTCCTTCCCCTCTCCCTATC
1 GGCTTCGCTCCTTCCCCTCTCCCTATC
135625 GG
1 GG
135627 TCGAGCTGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.04, C:0.48, G:0.14, T:0.34
Consensus pattern (27 bp):
GGCTTCGCTCCTTCCCCTCTCCCTATC
Left flanking sequence: Indices 135071 -- 135570
TTCGACATAAAAAAGCCGATCCGGCTTGGCTTCGCTATCGCTCATGACTTGTATTGTAGTCCTAG
TCTTGTAGTCGGCCTGGAATGCCTTTGTAGTCTTTCTAATGCTAATGCCTTCTTCCTTCATTCAT
TTTCTTTTAGTTGCGGTAGCTCCCGCGCCAGCAAGATACAGACGGCGAAGCCAAAGCAATACTAA
ACGAGCAGCCGCCCTAACGAGACTCTTAGTCAAGCCTAAACGTCCTTATTGAAAACTAAAGCGCT
AACGAGCAAGAAAAGGCCCCTTCCTATATCGAGAGATAGGCTAAGGCGCCTTTACGAATATTCTA
ATAGTTGGCCCCTCTTTCCTTTTTTGTTATTGAAAAAGGGGCAACTTTCTCGCTTGTTGCTTTAG
AAAGATGGCAGGGGCGCGTTAGCGCTTGACTAAGAGTTTCTCGACGGCTCCTTCCCCTCTCCCTA
TCGGTCAAGCTGCTTCGCTCCTTCACCTCGTAAACTCGGTAAAGT
Right flanking sequence: Indices 135627 -- 136126
TCGAGCTGCTTCGCCCCTCTTTCACGAGACTGCTTCGCTCCTTCCCGGCCCGGAAGTTCGCTTCT
GGCGACTAGCTTCTACCGCTAGCGCTTGGACTTGGAAGCAAGCTACAGCTACCTTGAATCAATCA
ATGAATGAAAAGAAAGCGCTTACCGAGGAATAGAAAGGGAGGACTGGTTGGTTCGAGGACCCGTT
GGTCAAAGGAAAGGGGAGGTCCTGATGCCGGGACGGAGCCGTATGAGGCGAGAGTGTCACGTACG
GTTCCTTTGAGAAGGGTGTGATACCACCACCTATCAGGCCCGACGAGCGGTCCACGGAGCTGCAT
CCCTACTCACCTGGTCCATGCACATCGCTCTCTCCAGGAGGTTGGCCGCCTATCCTAGATCTTCC
CATTTTCAAGAAGATCCCGGGCTCGATCTGGTTTAGTATCAAGGTGATTCTCTTTCTGTTTCTAT
ATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAAT
Found at i:195030 original size:16 final size:16
Alignment explanation
Indices: 195009--195040 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
194999 GAGAGTCAGT
195009 CTTTCTTATATCAACC
1 CTTTCTTATATCAACC
195025 CTTTCTTATATCAACC
1 CTTTCTTATATCAACC
195041 ATATATATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (16 bp):
CTTTCTTATATCAACC
Left flanking sequence: Indices 194509 -- 195008
CTTAGCTCTGTGTCGTCGCTCACAGTCCAAGAAAGGTAGTCCTTTCATTGGCTAACGGGATTACG
CTTAATGGTCTCGACCGATCATCGCTTCCTTCCTCTACTAGTTCTGGAGTCAAGTAGCATTTTAC
AACTGCTTTTGTGGGTCGATCACGGATTCAAGCTATAGCAAACAAGACAACTAGTCGATCCGGGA
CTGAGGTGCAAAGACAAAGGAATATGGTAGGTATAAGGAGTATAACAAGCAATCAAAGGAATGCA
GGCGTTGGTAAGCGTAGAGGGGCTAGAAAGAGAAGTTCAGGTCGGTAGGCAAAACAGGGGGTTTG
GGAACGAATCCTGTTCACACGAAAACTCTTCCTTTAGTCGAGACTCAGCAGCTTCACTCCTCTCC
CTATCGGTCGAGCTGCTTCGCTCCTCCCGTCTTAGTATACTAACTTAGCTTATTAGCCGTCACTC
TATGACTTGTAGACCAGTGTCTACAAGCTCCCAAAGAGAGTCAGT
Right flanking sequence: Indices 195041 -- 195540
ATATATATGCTCCGGTTTCTGGCTTTTTTTCATTAGTATCCCATTCCTGTATGCCATTCCCGCAT
TCACTCGAGACGTCCAACAAGTTCTCTCTCCCATTGGTAGGCAGAAGACAGGGGTTTTGGAGGGG
AAAGGTGTGTATAAGCCCTACATACTTTTTATGTTAGCATCGAATCTCTCCAGCTGAGCTTCGCT
ATGAACTCCTCGACTGAAAGACGCATAGTTTGAAAGATGGATGAGAAGTACGGTGAAACCTGTAT
CCCCATTTTGAAGTTAACCATAAGGAAATCGGCACACATGAATGCCTTGAATTCAATACGTCCCC
GGGAAACTCTACAATAATTTGTTTAATCGATTGGTCTGAGGTCTGTGCTCTGTCCACAAAATCCT
TTAATGAGATGGATCGGTCCCTGGAATATGTCGTACTCGTCCCGTCCACAAATGCCCTATACAAA
CGTCGAATTAGCTTTAATTAGTTCCTCTCTTTCTTGCCCTGTAGC
Found at i:211246 original size:20 final size:20
Alignment explanation
Indices: 211204--211246 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
211194 CAATGGGATA
* * *
211204 GAATTCCTTACAGAAGAGTT
1 GAATTCCGTACAGAAAAGAT
*
211224 GAATTCCGTACATAAAAGAT
1 GAATTCCGTACAGAAAAGAT
211244 GAA
1 GAA
211247 ATCCTATCAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (20 bp):
GAATTCCGTACAGAAAAGAT
Left flanking sequence: Indices 210704 -- 211203
TGTACGGTAGTTAGGAGCTCTTTCTCTCGCGGTAGTGCGCCCTCCCTATTTTGAGTGGGTGCTCG
CAAGGTCAAAGTCAAAAATGAGATTCTTTCATTAATACAGGGGTAGGGTAAAGAGTTTCAGTGAT
TTACACCTCGAAGTAGAGTGTGTAAATACCGGATGCATAGGTTGAGTCATTCGCTAAACAACTAT
TTAGTTGGGCGATCAACCAGGTGCTCCTACCCAAGCGGACTAATGAATGCCAACAGGAAGAACTC
ACTTTCCTATCGTTCAGTAGGAGATCCCTTCTTGTTTGTGGCTGGAAAATGATGACCTGTTGCTA
ATGGGGAGAGATCTTTCATTAGGGTTTGATGCTCCTCAATGGGGATCCCCAGAATAATAGCTTGC
TTGTGGAACCCTTTGTTTAGTATTTGTTTGGGGGTATTCTTGTACAGCTTGGCCCTTTCCCTGGC
GCACTGCCATCGAATCTACTAGTCCTCCTCAAAGCCAATGGGATA
Right flanking sequence: Indices 211247 -- 211746
ATCCTATCAAAAAACACGGGAAAACGCACAATGATAGTTATATTCGAGTAGAATTCCTTACAGAA
GAGTTGAATTCCGTACATAAAAGATGAAATCCTATCAAAAAACACGGGAAAACGCAAGTTTTGTC
TTTCGTTTCTCACTTCACCGAGTGAAAATCGAATTACAATCAAAAAACACGGGAAAACGCAAAAT
GAGAGTTTCGTTTCTCACTTCACCGAGTGAAAATTGAATTCCTATCAAAAAACACGGGAAAACGC
AAGAAAAGTCACTATCAAATGCAAGAAGAGTTCAAATAGAATTCCTTGCGAATTCGAGTTTTCCG
TGACAATCCAGAAATGTCATGGTTCCTCATATATGCATTCCATCAAATTAGTGCATAATTTGACG
ATTTCGATTTTCTTTCTCCGATCCAGTTCGTTCTGTCTTCTTTCCGACGGATCAGCCCTATGAGA
TCGAGAAGGGCTTCCGATTCTGTATGACAACAGAACGAGCATTCG
Found at i:211339 original size:20 final size:20
Alignment explanation
Indices: 211297--211339 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
211287 TATTCGAGTA
* * *
211297 GAATTCCTTACAGAAGAGTT
1 GAATTCCGTACAGAAAAGAT
*
211317 GAATTCCGTACATAAAAGAT
1 GAATTCCGTACAGAAAAGAT
211337 GAA
1 GAA
211340 ATCCTATCAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (20 bp):
GAATTCCGTACAGAAAAGAT
Left flanking sequence: Indices 210797 -- 211296
TCATTAATACAGGGGTAGGGTAAAGAGTTTCAGTGATTTACACCTCGAAGTAGAGTGTGTAAATA
CCGGATGCATAGGTTGAGTCATTCGCTAAACAACTATTTAGTTGGGCGATCAACCAGGTGCTCCT
ACCCAAGCGGACTAATGAATGCCAACAGGAAGAACTCACTTTCCTATCGTTCAGTAGGAGATCCC
TTCTTGTTTGTGGCTGGAAAATGATGACCTGTTGCTAATGGGGAGAGATCTTTCATTAGGGTTTG
ATGCTCCTCAATGGGGATCCCCAGAATAATAGCTTGCTTGTGGAACCCTTTGTTTAGTATTTGTT
TGGGGGTATTCTTGTACAGCTTGGCCCTTTCCCTGGCGCACTGCCATCGAATCTACTAGTCCTCC
TCAAAGCCAATGGGATAGAATTCCTTACAGAAGAGTTGAATTCCGTACATAAAAGATGAAATCCT
ATCAAAAAACACGGGAAAACGCACAATGATAGTTATATTCGAGTA
Right flanking sequence: Indices 211340 -- 211839
ATCCTATCAAAAAACACGGGAAAACGCAAGTTTTGTCTTTCGTTTCTCACTTCACCGAGTGAAAA
TCGAATTACAATCAAAAAACACGGGAAAACGCAAAATGAGAGTTTCGTTTCTCACTTCACCGAGT
GAAAATTGAATTCCTATCAAAAAACACGGGAAAACGCAAGAAAAGTCACTATCAAATGCAAGAAG
AGTTCAAATAGAATTCCTTGCGAATTCGAGTTTTCCGTGACAATCCAGAAATGTCATGGTTCCTC
ATATATGCATTCCATCAAATTAGTGCATAATTTGACGATTTCGATTTTCTTTCTCCGATCCAGTT
CGTTCTGTCTTCTTTCCGACGGATCAGCCCTATGAGATCGAGAAGGGCTTCCGATTCTGTATGAC
AACAGAACGAGCATTCGCTGGACGGCCAAAGATTGAATGAAATGTTGGCATGGGGTTTCGGCAAT
TTCAATTCCATTTTCAGTCTTTTTCAATTGAAATTGATCTTGTAT
Found at i:211458 original size:70 final size:70
Alignment explanation
Indices: 211345--211508 Score: 247
Period size: 70 Copynumber: 2.3 Consensus size: 70
211335 ATGAAATCCT
** ** *
211345 ATCAAAAAACACGGGAAAACGCAAGTTTTGTCTTTCGTTTCTCACTTCACCGAGTGAAAATCGAA
1 ATCAAAAAACACGGGAAAACGCAAAATGAGACTTTCGTTTCTCACTTCACCGAGTGAAAATCGAA
211410 TTACA
66 TTACA
* *
211415 ATCAAAAAACACGGGAAAACGCAAAATGAGAGTTTCGTTTCTCACTTCACCGAGTGAAAATTGAA
1 ATCAAAAAACACGGGAAAACGCAAAATGAGACTTTCGTTTCTCACTTCACCGAGTGAAAATCGAA
* *
211480 TTCCT
66 TTACA
211485 ATCAAAAAACACGGGAAAACGCAA
1 ATCAAAAAACACGGGAAAACGCAA
211509 GAAAAGTCAC
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 85 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (70 bp):
ATCAAAAAACACGGGAAAACGCAAAATGAGACTTTCGTTTCTCACTTCACCGAGTGAAAATCGAA
TTACA
Left flanking sequence: Indices 210845 -- 211344
AGTAGAGTGTGTAAATACCGGATGCATAGGTTGAGTCATTCGCTAAACAACTATTTAGTTGGGCG
ATCAACCAGGTGCTCCTACCCAAGCGGACTAATGAATGCCAACAGGAAGAACTCACTTTCCTATC
GTTCAGTAGGAGATCCCTTCTTGTTTGTGGCTGGAAAATGATGACCTGTTGCTAATGGGGAGAGA
TCTTTCATTAGGGTTTGATGCTCCTCAATGGGGATCCCCAGAATAATAGCTTGCTTGTGGAACCC
TTTGTTTAGTATTTGTTTGGGGGTATTCTTGTACAGCTTGGCCCTTTCCCTGGCGCACTGCCATC
GAATCTACTAGTCCTCCTCAAAGCCAATGGGATAGAATTCCTTACAGAAGAGTTGAATTCCGTAC
ATAAAAGATGAAATCCTATCAAAAAACACGGGAAAACGCACAATGATAGTTATATTCGAGTAGAA
TTCCTTACAGAAGAGTTGAATTCCGTACATAAAAGATGAAATCCT
Right flanking sequence: Indices 211509 -- 212008
GAAAAGTCACTATCAAATGCAAGAAGAGTTCAAATAGAATTCCTTGCGAATTCGAGTTTTCCGTG
ACAATCCAGAAATGTCATGGTTCCTCATATATGCATTCCATCAAATTAGTGCATAATTTGACGAT
TTCGATTTTCTTTCTCCGATCCAGTTCGTTCTGTCTTCTTTCCGACGGATCAGCCCTATGAGATC
GAGAAGGGCTTCCGATTCTGTATGACAACAGAACGAGCATTCGCTGGACGGCCAAAGATTGAATG
AAATGTTGGCATGGGGTTTCGGCAATTTCAATTCCATTTTCAGTCTTTTTCAATTGAAATTGATC
TTGTATACGCCGGTTGAAGCAGACGTTGGAGCATCCAAACGAACCAGCAGAGGCAGCTGTGGCAG
AGACAACAGCAAAAGCACTAGTCTCCGTTGATCACCTATCAGCAGGGGAAGCAGCATAGGTGGCA
GGAACTTACTAGGGTTTAGATACCAATTCGAAGAGCATTCGTTTA
Found at i:214487 original size:16 final size:15
Alignment explanation
Indices: 214462--214495 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
214452 ATTTTTCTGT
214462 TATATATTATAATAA
1 TATATATTATAATAA
*
214477 TATATTATTATTATAA
1 TATA-TATTATAATAA
214493 TAT
1 TAT
214496 TTTCTCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATTATAATAA
Left flanking sequence: Indices 213962 -- 214461
GGAACTTCACCTTAATCAATAACCGAAATTCCATTAATGAAATAAAAAAAAGAGGGTGTGGATAA
CTTGTATATAGCTTTGGCTAACCTTTTCTTTATTATTTCCCCCTGTTCTATTCATACTACACTTA
TTACCTTCAAATTCCGTCTTCGATAACGACAAAAATCTATTTTATTTTATTGATATAAATTGATC
TAAGATAAATAGAAAAAAGATCAATCAAGTGACTAAATGAACTAATTGGTTCTATACTGTATACT
ATATACAAAAATTTTTACATTACCCGGGGTTATTTTGTTGCAATTCTATGAACAGGGATTAAGTT
TTTTTAGTTATTTATATTTATTGACTAATTTTTTTATACTTCTTCCTTATCCTTAATTTCTTCTT
TCGCCTACATCTTTTATGTCTATTTATGTTGATTATCTCTATAGTGCCAATCCAATCCAAGTCCG
TAGTTTTTTGAATTCTTTTCTCTTATTTATTATATATTTTTCTGT
Right flanking sequence: Indices 214496 -- 214995
TTTCTCTTATTATATTTTTTTATCTTTATCTATTTAAAATCGTGTTATTTCCATTTATTTTTTAT
TCATTTAGAATTCTTTTGTTTTCTCCATTGTAGTCGTTTTTCACTATTCACATTCATATTGACAA
CAGTGTATCAAACAAATATAATCCGATCGTGTATAAATGAAGCTAGTTATCTCCGTTTCATGACC
TTTGCTTTTCACGCACATGATGGTCGCATTGTATTTTCTGTGATACAAAAAGTGACTTTTGTGTG
ATATAAGAAGTTTTTTTGTTTTTATTGGAATATTTTGATTACGTCGTGTAATTTCATTTCTTTTT
TTATTTTGATTCCGATTGTATCTACACAGAAAAATTTTTGAGATTTTTGGGGTTGCTAACTCAAT
GGTAGAGTACTCGGCTTTTAAGTGCGGCTAGCATCTTTTACACATTTCTATGAAGTAACAGATTC
GTCCATACTATCGGTAGAGTTTGTAAGACCGCGACTGATCCTGAA
Found at i:274172 original size:16 final size:16
Alignment explanation
Indices: 274151--274182 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
274141 CTCTGCTACC
274151 TATTTTGACTAGTGGA
1 TATTTTGACTAGTGGA
274167 TATTTTGACTAGTGGA
1 TATTTTGACTAGTGGA
274183 GTAGGGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.25, T:0.44
Consensus pattern (16 bp):
TATTTTGACTAGTGGA
Left flanking sequence: Indices 273651 -- 274150
TAATAATTCTGTAGAGCTTCCGCATAATTTCCTTCGGATTGAGCCGACATTCGTTACGGTCGTTC
GTTATTCCATTCAAAGAATCTCCGTTCCAGAACCGTACGTGAGATTCTCATCTCATACGGCTCCC
CCTTTATGTGATGCGCATAATGAGATGAGAATAATACATGAAATCAAAAAAGATTGAAATACGGG
ACTAGCGTTTTTACAAAAAATCTCTAGCTCCTGTAAAAGATCTTTTCTTAACATCAAGCATATTG
TTACTAGATAAAAATGGTAACTCTAACAATTTCTTTGTCCTCAACGCCTCTAAATTTCCAGGAAT
TAGTCACTTCAACAGTCTTCGATGGTTATACAGGTATCCAAAATACAAACGAGATGGATGTTTGT
TGTCCCAACCATTTTTCTAAGTTCCGATCCCGATAAGGAAAAGGGATAATTTATAACAAAGTTTT
TGTGTTGTTGATTCCTAGGTGTAGTGCTTCTTCCCCTCTGCTACC
Right flanking sequence: Indices 274183 -- 274682
GTAGGGTTGACTTAATCCATAGGTTACACCTTTCGCTCAATACTAGAATCGACAATTAAAGCATC
TGAGGTTACATTAATCGGGGATACACGACAGAAGGAATTTTTTTATTTTTAAATTGTTATTTCAA
TTATTGTTTTCTTTCTATCCCGAATAATGTGTCTTTCTACTAAGACGTAGAGCGGTAAAGAAAAG
AAAATAAAATCGCACCATCTCTGTAATAGGTGAATGCCTCTTTTTCCCCGGAAGTTGTCGGAATT
CTTCGTAATAAGATATTGGCTACAATTGAAAAGGTCTTATCGATCAAATTTCCATTTATCCCAGA
TCTAGGCATCGGTAACAACCCCATTCTATAATTTCTTTTAATTACCTCTCGTGATAAAATGATCC
CACAAACAAAGGAATTGCATAGTACGAAATAACATAAAAACGGATTCTTAATCCTACTCGATATT
CAAATTGTTTCTTTTTTATTTCACAGGAATCAATAAAACATAAGA
Found at i:301139 original size:18 final size:18
Alignment explanation
Indices: 301106--301152 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
301096 TTGTCCAATG
*
301106 AGATACTA-CGCATAATA
1 AGATACTACCTCATAATA
*
301123 ATATACTACCTCATAATA
1 AGATACTACCTCATAATA
*
301141 AGATAGTACCTC
1 AGATACTACCTC
301153 GGGGTAGCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 7 0.28
18 18 0.72
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.28
Consensus pattern (18 bp):
AGATACTACCTCATAATA
Left flanking sequence: Indices 300606 -- 301105
TCCTACATGTTACTAACACTCCTTTGATACTTCCAAGAGTTTCTCTGCCTCTTTTATTTATTTGT
GCTTAATTTTTTCGATTATACTAGAAATCATATAATAACTTGTTATAATTCGATTTTTTGGATTG
TTTCATCAATGGTGTTGTGCCCGAATGTCTTTTTGACTATGTGCTAGTGATTCCACTATTATTAG
TGAAGAATAATTTTTAGTGAGCAATAATGGAATAATTCTTTTATATTCATAGAGATAGGGGACAT
AATTCACATGGATATGGTAAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTATCTTT
CACTCGTAGTATGGGGAAGAAGTGGACTCTAGAAGTACTACTAATTGAAGAATCAAACTGTATCG
ATTGTTTTTGTTTTATTTTATAGATCGTTCTGCAAAACTTTTTTTTCTTTGATTTTTTGTGGATA
CATACTTTCGACACGAAAGAACATAGACATAGTGGTTGTCCAATG
Right flanking sequence: Indices 301153 -- 301652
GGGGTAGCCACCCACATATTACGTGCTTACCACTTGTTTTATTTATTATTATTAGTATTTTAGTT
ATTTTCAAAATAGGATTTATGCTTGTTTTATGGAACTCATTTCATATCATGGTTCAAACGTTAAA
GATGGGGTTTGCTAATTCTTTTAGAAACGAAATCCGAAGATAACAAGTTCCCACGGAACCGAACC
CCTGGATCATCTGTCAACTGCTCAATCAATTACTTCTTTCGAATGCTAAAAAAAGATTAGTGGCC
TTTCGATTATTTCATTTCAGATGGAATCAACATGAATTATGAAGCAAAGAAATAGAATTGGGCCG
CTATGTATATTATATTAAATTAACATTACATATATGTAATTGATATGATATCTATATATAAATCG
AAAGATATATATTGTCGATTCATCTATATTCAAATTGATCTATATTCAACCTCTATTTTTATACA
GTACAATTTTATACACTTCAATAACAATAATAGATAGTATGGTAG
Found at i:303724 original size:19 final size:20
Alignment explanation
Indices: 303700--303753 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
303690 TTTTATTTAT
303700 TTAATTTA-AATAATATACA
1 TTAATTTATAATAATATACA
303719 TTAA-TTATAATAATATACA
1 TTAATTTATAATAATATACA
*
303738 -TAAATTATAAT-ATATA
1 TTAATTTATAATAATATA
303754 GTTATATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.33
19 22 0.67
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (20 bp):
TTAATTTATAATAATATACA
Left flanking sequence: Indices 303200 -- 303699
AAGGACAAATGGGTTATATCATTTTATGGTGGATCCGCGAATTATTGGGCCGAGCTGGATTTGAA
CCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCGCTCGGGCATCGACCCG
GGAAGAATCAATTCCAAGCTTATTGATAATCCATGATCAACTTCCTTTCGTAGTACCCTACCCCC
AGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGG
CATACTTGCCCGACTGCCATCATACTATGATCATAGTATGAATAGTTTTTTGAAATTGTCAATAT
AAATATAATGGACTAATATGATGCAATTCGAAGGATTTTTCTGTCTTTCATTATTCCATAGAATT
TTTTGATTTGTGATTTATATTTATGAATCGTTCATTCTAATCACCATTCCCCATATAATTCTATA
TAGAAATTCTTTTATTTTAAATTGAATTGCATTTTTTTTATTTAT
Right flanking sequence: Indices 303754 -- 304253
GTTATATTAATTACATATAGAATATCAAATGAAAATAGTGATTAGAAGAAACGTCTAAAAAATGA
AAAAACAAAAATAATAAATATTCTAAAAGAAAACAAATATTATTTAAATAAAAATATAATACGAA
GGCTAGTACCCTTCGGGAAGTGATTGGTCTGCCATATGCTATAAACGGGATTAAACTCCATTTCT
CATACTTTCACTCATTGTTAAGATTAGATTAGGTAGGTATATTTCGATCTCACACTAAGCCAAGA
AATTCAAAAACGATAAATTTGGAAATCCGGAGAAGAGCGGGATAGGGATCAACAAGTTATTGAAA
ATTGTTTTTCTCGCCAAGTCGAATTGCTTTATCAATGATTCGGTGAATGGATCCATGTTCAATTC
GTGGATGTACATGTATCAATCAAATGAATTTCGTTAGGATGGGGCTCATCAATTTAATTAGGATC
GGTCTTATGATGAAACAATTGATTGCATTGATCAAATCCAATATC
Found at i:303730 original size:16 final size:19
Alignment explanation
Indices: 303708--303753 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
303698 ATTTAATTTA
*
303708 AATAATATACATTAATTAT
1 AATAATATACATAAATTAT
303727 AATAATATACATAAATTAT
1 AATAATATACATAAATTAT
303746 AAT-ATATA
1 AATAATATA
303754 GTTATATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (19 bp):
AATAATATACATAAATTAT
Left flanking sequence: Indices 303208 -- 303707
ATGGGTTATATCATTTTATGGTGGATCCGCGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTA
GACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCGCTCGGGCATCGACCCGGGAAGAAT
CAATTCCAAGCTTATTGATAATCCATGATCAACTTCCTTTCGTAGTACCCTACCCCCAGGGGAAG
TCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTG
CCCGACTGCCATCATACTATGATCATAGTATGAATAGTTTTTTGAAATTGTCAATATAAATATAA
TGGACTAATATGATGCAATTCGAAGGATTTTTCTGTCTTTCATTATTCCATAGAATTTTTTGATT
TGTGATTTATATTTATGAATCGTTCATTCTAATCACCATTCCCCATATAATTCTATATAGAAATT
CTTTTATTTTAAATTGAATTGCATTTTTTTTATTTATTTAATTTA
Right flanking sequence: Indices 303754 -- 304253
GTTATATTAATTACATATAGAATATCAAATGAAAATAGTGATTAGAAGAAACGTCTAAAAAATGA
AAAAACAAAAATAATAAATATTCTAAAAGAAAACAAATATTATTTAAATAAAAATATAATACGAA
GGCTAGTACCCTTCGGGAAGTGATTGGTCTGCCATATGCTATAAACGGGATTAAACTCCATTTCT
CATACTTTCACTCATTGTTAAGATTAGATTAGGTAGGTATATTTCGATCTCACACTAAGCCAAGA
AATTCAAAAACGATAAATTTGGAAATCCGGAGAAGAGCGGGATAGGGATCAACAAGTTATTGAAA
ATTGTTTTTCTCGCCAAGTCGAATTGCTTTATCAATGATTCGGTGAATGGATCCATGTTCAATTC
GTGGATGTACATGTATCAATCAAATGAATTTCGTTAGGATGGGGCTCATCAATTTAATTAGGATC
GGTCTTATGATGAAACAATTGATTGCATTGATCAAATCCAATATC
Found at i:305251 original size:15 final size:15
Alignment explanation
Indices: 305231--305260 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
305221 TTGATTCCAA
305231 AACAGAAGATAAGAT
1 AACAGAAGATAAGAT
*
305246 AACAGAGGATAAGAT
1 AACAGAAGATAAGAT
305261 CAATTCCGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.23, T:0.13
Consensus pattern (15 bp):
AACAGAAGATAAGAT
Left flanking sequence: Indices 304731 -- 305230
ATTCTAGAAGTTCTAATTCTCTAATTTATATATTCATTCTATAGAATATATAAATTCTATTACTT
TATTCTAGATTCTATTCTAATCCTTAGAATAGATTCAAATAATCTATCATGATTCTAATGAATCA
TGATAAGTCGTTTCCTTGAATTCCCAAATATTCCTATTTTCCATTATTCCAATCAATTATAAAGA
TTCGAAATCAACAACAAAAAAAAAAAAATAAAAAGTAAGTGGACCTAACCCGTTGAATCATGACT
ATATCCACTATTCTGATATTCAAATTCGATAAGGATTAAATTTGAACAGTGGATCTTTTTTATTT
CATTTTCATATTTATTTGGACTCCACACACAGGAATCTGTCGATATTTCCGATTAAATCCTCTTG
TTTGTAGACGTTCTATAGGAAAAAATTGCTATTTCCCTTTCTCCACAGAGAAACGTTTATTCCAA
GTCACAACATATGAGCCGTTTAAAAATATCTTTCTTTGATTCCAA
Right flanking sequence: Indices 305261 -- 305760
CAATTCCGATCTATATAAGATAAGATATTTTCTATCTATATAAAAAAGATAGATTATATATCAGA
TCACGGCTCCATGTGCCAAATATTTCCATATTGATATATATTCAATTTTTGTTCCAACAATGTGA
CGAAGAATGGAGACGAGAACGATACTTTCATTTACAGTATTGAGTTCATAATATTGATCTAGGTC
AGGTTATGGACCAATCAAAAAATGATTTTTATATTCGAAACCCATTAGAAAGAAGGGACAGTAGA
AATCATACAGAAATGATAGACTCGAAGGCCCTGAAAATGCTATGAGGTGTTCGAAAATGGTTGAA
GTTAGTTGAATAGGAGGATCACTATGACTATAGCCGTTGGTAAATTTACCAAAGACGAAAATGAT
TTATTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCT
ATTGCTCTTTCCTTGTGCCTATTTTGCCGTAGGAGGTTGGTTTAC
Found at i:314770 original size:14 final size:14
Alignment explanation
Indices: 314751--314778 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
314741 CGGCGAGGGC
314751 CAACTATTAGAATA
1 CAACTATTAGAATA
314765 CAACTATTAGAATA
1 CAACTATTAGAATA
314779 TTAGTAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
CAACTATTAGAATA
Left flanking sequence: Indices 314251 -- 314750
CTAGTGTGTAACTTAAACTTCGGAGAGGAGGTTGTGGAAGGTAGTCGTAGGAGAGGGAAAAAGAC
CCAAAGTGCTCAGTTCAAAATCATATCGTCGAAATGTTAGAGGTCTTGGGAACCGAGACAAGAGA
GTGACCCTGACGGAACGGAATGAATAAACAAGGGGTTCCGGGAGAGGTAGGTGGGATCTATCGAA
TGGGGATGCGACATTTGGCAACTTTCAAAATCAAGCTGTCAGAAGTCGCAGGACTGGCGGGAAAA
GAGGTTCGAATGGGGGTAACGGAGTTCGATATCATCAACCCGGACAATAATAAGGTCGTTCGCCG
TAAATTTCTTAAGCAGCTTCTAGACCACGCATCCCGAGGAAGCTAAGGAACGATAGATTAGCTCT
GGCGTGGGATTCTTTCGCAATCCCGCGATTCAATGTATCACAGGTGTGACCTGAGACACTATTTT
CAATCTCTTAAACATATAGAGTATCGATCAGATAACGGCGAGGGC
Right flanking sequence: Indices 314779 -- 315278
TTAGTAAAGGCGCCTCCACTATCCTAAATATGATTCCGTTCCGTCAGGGTCAGAGGAGGTTCCAT
TTGCTCCATTTCCATATAGCTGACGGTGTGTGCCCATCCAACTCTCCCTCTAAGCGGGCATCCAG
AAGTCTACTTTTTCCATTTGGCCCATATGAAAACGGGTAGGATTTGGGTCGGGGGCAAGGGTCGA
GAGCTTGGGATTCGATACCAAGAGATAGAGTAGAGGGTGGCAGGTTATCCCCTGCTTGGGGTTCA
GGGATAGCCGGAGAAAGCTTGGATGGCATTCCTTTCTATATAGACTGGATTTCAAGCGATGGTGG
ATTCGGAGTGGAGCCGGTCGAGGGAACAAAGGACTGAGAGTCCATTGCCTTGAATCGAGAGGAGA
GGAACGAAAGAAAGGGGTTTCCGGGCTCACCCGCCTTTGTTGCTCCCACTGGAGGGTTCAGAGAG
GCATTTGATCCAGGAGCCTCTTCGCTGGTACTTCCTTTCGAGGGT
Found at i:320619 original size:32 final size:32
Alignment explanation
Indices: 320578--320643 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
320568 CATCTATTTT
320578 CATTGTTCAACTCTTTGACAACACGAAAAAAC
1 CATTGTTCAACTCTTTGACAACACGAAAAAAC
*
320610 CATTGTTCAACTCTTTGACAACATGAAAAAAC
1 CATTGTTCAACTCTTTGACAACACGAAAAAAC
320642 CA
1 CA
320644 AAAAAAGCTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAAAC
Left flanking sequence: Indices 320078 -- 320577
GTTGGGCAGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGT
CCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGG
ACGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGA
TAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCC
CCAGAGCCTCCGGTAGCACAGCCGAGACAGCGATGGGTTCTCTGCCCCTGCGGGGATGGAGCGAC
AGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGATGAGCCGTTTATCATCACGATAGGTGTC
AAGTGGAAGTGCAGTGATGTATGCTGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTT
CCTACATGACCCGATCAATTCGATTAGGCACTCGCCATCTATTTT
Right flanking sequence: Indices 320644 -- 321143
AAAAAAGCTCTGCCCTCCCTCTCTATCTATCCAAGGGATGGAAGGGCAGAGGCCTTTGGTGTCCC
CTCCAGTCAAGAATTTTGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCG
TTCATGGTTCGATATTCAGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGT
GGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAG
GATGATAAAAAGCTTAACACCTCTAATTCTTATTACTTTTCAATATTCAATATGGAAAAAAAAAA
ATTCAAAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCCCACTTTTCTCTCTCACTTCACA
CCTTGGAACGCACCGTTCTTATAGAGAGAGAGGCGCTTTCACATCTTCTTAACCCGAAATGGCAA
ATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTAGGGTACCCCCGGG
Found at i:374842 original size:13 final size:13
Alignment explanation
Indices: 374824--374849 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
374814 TATTATTTAT
374824 TAATAGTAAATTA
1 TAATAGTAAATTA
374837 TAATAGTAAATTA
1 TAATAGTAAATTA
374850 GTTATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
TAATAGTAAATTA
Left flanking sequence: Indices 374324 -- 374823
GTTTTGAATTAGAGACGTTCAAAATGATGAATCAACGTCGACTATAACCCCTAGCCTTCCAAGCT
AACGATGCGGGTTCGATTCCCGCTATCCGCTTATCCTATTCTTATATATTTAAAATATAATAAAA
TAGAATAAATTTTTATTTAATTTATATTTTAAAATTACTCAAATAAAAATTTTAAATTTACTTAA
TTTAAAGTAATGTATTTGTTAATGTAATGCATCATTGAATTGAATACGCAATTTCCGGAATTCTC
ACACATTTTTTTTACGAACAAGAGAGGTTAAAATACGAAAAAAAATTGGAATGAAAAGCGTCCAT
TGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAA
TTTTTTTCCATATATTTTTTTAGTTTTTAATTTCTATATCATGTCAAGAAAGGTATTTTGAATGA
TTTGAATAAGAGACGCTTATAGTTAATAGAATAACTATTATTTAT
Right flanking sequence: Indices 374850 -- 375349
GTTATTATATTAACTGTAACTCTATTTTTAGATTTTTATATAAATAAACTAATAATTAGATTCTG
TTTTATTTGAAGATAAGATATTATATTAGTTGAAAAGATATGAAAATTAGAAATATTAAGATATT
TATGATATTCTATTCTAAATCTATTATTAGAAATATAATCTAATTTAAAAAGGGATTCATAGAAC
GAATCGCACTTTTACCACTAAACTATATCCGCTACAATGCAATTATTGCATATAAATGGACCTTT
TGTCGAAGACGAAAATAAGTCGTAGTACTAAGTAATAAAAAGATCGGATCAGAAAAGAATCCTTA
ACATTAGAGCGTTGACGTATTTTCGTCAGGGCGACTAATGAGATTAGAAAAAGAGGACTCATTTT
AATTAACTAAATAACATTTTATTCCAGTAAAGTAATAAAGAATAATAATACGAATGGCACCTTGA
TTCTATATCATCTTTTTCTGTATCATAGGAATCAAATAAAAATTC
Found at i:375715 original size:16 final size:16
Alignment explanation
Indices: 375696--375743 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
375686 TCTATAAAAT
375696 TATATCGATATAATTA
1 TATATCGATATAATTA
*
375712 TATAT-GTATAGAATTA
1 TATATCG-ATATAATTA
*
375728 TATATCTATATAATTA
1 TATATCGATATAATTA
375744 AGGGTAGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 1 0.04
16 26 0.96
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (16 bp):
TATATCGATATAATTA
Left flanking sequence: Indices 375196 -- 375695
TTCGTCAGGGCGACTAATGAGATTAGAAAAAGAGGACTCATTTTAATTAACTAAATAACATTTTA
TTCCAGTAAAGTAATAAAGAATAATAATACGAATGGCACCTTGATTCTATATCATCTTTTTCTGT
ATCATAGGAATCAAATAAAAATTCTTCTTATGATTCTTGTTGTTTCGATTTTATTTGTTTCAAAA
ACATTTTGTGTTTTCAAATCAAATAAATTACGATTCATTGGAACAAAAAAAGCCCGGCTAGGTAC
TGACCAGGCCAGGCCGTGGAAATAAAAAGAAAAGGACTTTTGGGATGAAATAAAAGAGGTACTTT
ATTTTATTTTTATTTATAAATATATATTGATAGTAATCTTTAATATATTGGTATTATTTATATAT
TAGGATTGGAGATATCTTTTCTTTTGAGCCCTTACTTTATCTAATTTATCTAAATGGAATCGCTG
ATAAAAGTTTTTATCGATGGATATCCATCGATATATCTATAAAAT
Right flanking sequence: Indices 375744 -- 376243
AGGGTAGATAAAGATAATAAAGAGAGATAAAGAAGGGCTTTTTTCAAACCTTCATTTTCGATTTT
TTATAAAATGTATCATAGTAATTATCCTTTTTCAATTTGGGGAGAGATGGCTGAGTGGACTAAAG
CGTCGGATTGCTAATCCGTTGTACGAGTTTTTTGTACCGAGGGTTCGAATCCCTCTCTTTCCGTT
TCTGTCAATTACTTGGTATTTTTTTATAGTTGAGGAAAGATGTGGAATAGATAAAATTTTAAGAC
CATTTCACAAGGAAAAAATCTTATTTTTTTTATTCTTCACGTCCCGGATTACGTCCCGGGTCATT
AGATAGGAATCCGAAAATGAAGAGAGAAACAAAGAATATTACTACTGTATAAACAAATAGTTTGA
GAGTAAGCATTACACAATCTCCAAGATCATTTTTTTTTTTTTTGAGCCTTTACGGCTTATTTTTA
TTAAACACTAATAATAAAAGTGAAATCTTTTTAGTGTTTTTTTCA
Found at i:404890 original size:27 final size:27
Alignment explanation
Indices: 404860--404915 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
404850 AGCAGCTCGA
*
404860 CCGATAGGGAGAGGGGAAGGAGCGAAG
1 CCGATAGGGAGAGGGGAAGGAGCAAAG
404887 CCGATAGGGAGAGGGGAAGGAGCAAAG
1 CCGATAGGGAGAGGGGAAGGAGCAAAG
404914 CC
1 CC
404916 ACTTTACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.14, G:0.48, T:0.04
Consensus pattern (27 bp):
CCGATAGGGAGAGGGGAAGGAGCAAAG
Left flanking sequence: Indices 404360 -- 404859
AACGAAAGAAGAGACGTTTCTCGCTCGGTGCCTAAAGCGCACTATGCTCCCCTTCAACAAATGAG
AGTTTTCGGTGGAACCGGTGAACCACGCGAGCAGGTTAGATGCGTGGGACAGAGGGCTCGTAGTA
CCTGCTAGCGCTGCTATGCAGTGGAAGGGAAGGAGCCTAAATCGACCCCCTTCTTTCTTTTTTTT
TTCAAAGAAAAAAAAAACAGTACAAAGAGATTAGACTCTCGGATGAGACTAAGCAGCCACCGACC
GTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCGAAAACCTATCAAAAATGGAGCCTAGTTT
AAGCTGTCAAACAAATGAGAGAATGGAAAATTCTGAATATCCACTAGTAGGGATATGGATGGAGT
CTCTCTCAGTAAAGAGAGTTGTAGATTCGTAGGAAAGGAGAGGAGCGAAGCCACTTTACCGAGTT
GACGAAGGGAAGGAGCAAGAGTGAAAGAGGGGCGAAGCAGCTCGA
Right flanking sequence: Indices 404916 -- 405415
ACTTTACCGAGTTTACGAGGTGAAGGAGCGAAGCAGCTTGACCGATAGGGAGAGGGGAAGGAGCC
GTCGAGAAACTCTTAGTCAAGCGCTAACGCGCCCCTGCCATCTTTCTAAAGCAACAAGCGAGAAA
GTTGCCCCTTTTTCAATAACAAAAAAGGAAAGAGGGGCCAACTATTAGAATATTCGTAAAGGCGC
CTTAGCCTATCTCTCGATATAGGAAGGGGCCTTTTCTTGCTCGTTAGCGCCCCCTTACCCCTAAA
CAAAAAGGTTTTTCATAAAGTTGTCTACGCCTTTTGAAAACCTTACTCTTACTACTAATAATAAT
GAAGGGGCTTCTTTCTTCAAATATCCTATAAAAAAAGTTGGGGCTGAAAAGCTTTGAGTTTAGGG
GTGCGCAGGTTTGGAACCCTATACAAGGGGCTTTTCCTTTCAAATGACAACAGCCTCTTCCTGCT
GCGAGGGCGTTGCACGAAACCAAACCGCTCCCCCGCCCGATCAAG
Found at i:404976 original size:35 final size:35
Alignment explanation
Indices: 404887--404979 Score: 93
Period size: 35 Copynumber: 2.7 Consensus size: 35
404877 AGGAGCGAAG
*
404887 CCGATAGGGAGAGGGGAAGGAGCAAAGCCACTTTA
1 CCGATAGGGAGAGGGGAAGGAGCAAAGCCACTTGA
** * *
404922 CCG--AGTTTACGAGGTGAAGGAGCGAAG-CAGCTTGA
1 CCGATAG-GGA-GAGGGGAAGGAGCAAAGCCA-CTTGA
404957 CCGATAGGGAGAGGGGAAGGAGC
1 CCGATAGGGAGAGGGGAAGGAGC
404980 CGTCGAGAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
33 2 0.04
34 3 0.07
35 37 0.82
36 1 0.02
37 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.41, T:0.12
Consensus pattern (35 bp):
CCGATAGGGAGAGGGGAAGGAGCAAAGCCACTTGA
Left flanking sequence: Indices 404387 -- 404886
GTGCCTAAAGCGCACTATGCTCCCCTTCAACAAATGAGAGTTTTCGGTGGAACCGGTGAACCACG
CGAGCAGGTTAGATGCGTGGGACAGAGGGCTCGTAGTACCTGCTAGCGCTGCTATGCAGTGGAAG
GGAAGGAGCCTAAATCGACCCCCTTCTTTCTTTTTTTTTTCAAAGAAAAAAAAAACAGTACAAAG
AGATTAGACTCTCGGATGAGACTAAGCAGCCACCGACCGTTCCGACGCGCCCCTGACCTATCTTG
ATTAAGACCGAAAACCTATCAAAAATGGAGCCTAGTTTAAGCTGTCAAACAAATGAGAGAATGGA
AAATTCTGAATATCCACTAGTAGGGATATGGATGGAGTCTCTCTCAGTAAAGAGAGTTGTAGATT
CGTAGGAAAGGAGAGGAGCGAAGCCACTTTACCGAGTTGACGAAGGGAAGGAGCAAGAGTGAAAG
AGGGGCGAAGCAGCTCGACCGATAGGGAGAGGGGAAGGAGCGAAG
Right flanking sequence: Indices 404980 -- 405479
CGTCGAGAAACTCTTAGTCAAGCGCTAACGCGCCCCTGCCATCTTTCTAAAGCAACAAGCGAGAA
AGTTGCCCCTTTTTCAATAACAAAAAAGGAAAGAGGGGCCAACTATTAGAATATTCGTAAAGGCG
CCTTAGCCTATCTCTCGATATAGGAAGGGGCCTTTTCTTGCTCGTTAGCGCCCCCTTACCCCTAA
ACAAAAAGGTTTTTCATAAAGTTGTCTACGCCTTTTGAAAACCTTACTCTTACTACTAATAATAA
TGAAGGGGCTTCTTTCTTCAAATATCCTATAAAAAAAGTTGGGGCTGAAAAGCTTTGAGTTTAGG
GGTGCGCAGGTTTGGAACCCTATACAAGGGGCTTTTCCTTTCAAATGACAACAGCCTCTTCCTGC
TGCGAGGGCGTTGCACGAAACCAAACCGCTCCCCCGCCCGATCAAGTACCTGTTGCTTTGCTGGT
AGGCCCACTTAGGTTAGGGGGCATTGTCCCTCAGTTCTTACCAAC
Found at i:418704 original size:59 final size:59
Alignment explanation
Indices: 418622--418818 Score: 285
Period size: 59 Copynumber: 3.4 Consensus size: 59
418612 CCCCTCGTCA
418622 ACGAGACTGCTTCGCTCCTTCCCCTCTCCCTATCGGTCGAGCTGCTTCGCCCCTCTTTC
1 ACGAGACTGCTTCGCTCCTTCCCCTCTCCCTATCGGTCGAGCTGCTTCGCCCCTCTTTC
**
418681 ACGAGACTGCTTCGCTCCTTCCCCTCTCCCTATCGGTCGAGCTGCTTCGCCCCTCTCCC
1 ACGAGACTGCTTCGCTCCTTCCCCTCTCCCTATCGGTCGAGCTGCTTCGCCCCTCTTTC
* * * *
418740 TATCG-GTCGAGC-T-GCTTC-GCCCCTCTCCCTATCGGTCGAGCTGCTTCGCCCCTCTTTC
1 -A-CGAGAC-TGCTTCGCTCCTTCCCCTCTCCCTATCGGTCGAGCTGCTTCGCCCCTCTTTC
418798 ACGAGACTGCTTCGCTCCTTC
1 ACGAGACTGCTTCGCTCCTTC
418819 GTCTCCTGAT
Statistics
Matches: 119, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
56 4 0.03
57 4 0.03
58 41 0.34
59 62 0.52
60 4 0.03
61 4 0.03
ACGTcount: A:0.09, C:0.44, G:0.18, T:0.29
Consensus pattern (59 bp):
ACGAGACTGCTTCGCTCCTTCCCCTCTCCCTATCGGTCGAGCTGCTTCGCCCCTCTTTC
Left flanking sequence: Indices 418122 -- 418621
GTGTGCCGGTGCCATTACCCCAAAAAACCCTACATTAGCAGTTCGGGTGGAATCAGACATAAACC
AAGTCCAAGAAGACCGAGGAGGCCTTGGGGAGAAGGTAGCGCACTAATTCGATTCTCCTTTCCTG
CTACTAGGGAAGCGCGTGCTACTGCTACTACTTTTGCACCTGCTTCTCCTATTATAGTGGAATGA
ACTCCTACGCCTGGAACTCCTCTTTACCGCATTTCTTCCTCTTCTGCAAGAGTCATGTTCACTGC
TCCTGCACCTCTAACTTCAACAGGAACTTCCGCATCTCTATTCGCATCTTCCTCATATGTAGTCT
CTACGCTTGAAAAAAAAAGGCTTTTTGATCAGAAACGACTACAAGTGCGTGCATTTCCCTATCAA
TGCCCTTGAACTAACCTCAAAGGTTAGGCACGAAGGGCATTCTGAGGATGTATTTCATCAGCCAG
GCACCCAACTATTTCTTTTTTTAAAACTGCTCCTTCCCCTCGTCA
Right flanking sequence: Indices 418819 -- 419318
GTCTCCTGATAACATTTGTATTGCTACAATCATGCTGACCGATATGCAACTGACTGAACAGGACA
TATGGCCGGGCAGGACGGCTTTGCTTAAGACCGGAATGCTACCCCCGCTCGAACTCAAGAACGAA
ACTCAAGTCATTGCTCATTCCCGCTCATGCTTGCTATAACAATTCCTTACGAGAGGCTACTAGAC
TTGTCTAAAAGAAGAAAAGATGCACGAGCCACTCTTTCTCTTATATACGCTATTTGAATCTCGTG
ATTTGAATTGAAGGCCTATCCCCTGCCTATGCGCTTGCCTTTACTACCTGCCCTTACCTGCCTGC
CTTGAACTACTGCACTTGCGCATACCTTTTCTTGCTCGAGACAGAAGATAGCTTGAACTGGCATT
GTAAAGATATATAGCCAATAGAAAGAAGTATTCCCATGGAGAGAAATGGAATTTCAAGGCTTTCT
ACCAAAGGGGAATCGAGAGATAAGCCTTGAGCGGTCAGACCAATT
Found at i:418736 original size:29 final size:29
Alignment explanation
Indices: 418642--418794 Score: 195
Period size: 29 Copynumber: 5.2 Consensus size: 29
418632 TTCGCTCCTT
418642 CCCCTCTCCCTATCGGTCGAGCTGCTTCG
1 CCCCTCTCCCTATCGGTCGAGCTGCTTCG
** * * * *
418671 CCCCTCTTTC-A-CGAGAC-TGCTTCGCTCCTT
1 CCCCTCTCCCTATCG-GTCGAGC-T-GCTTC-G
418701 CCCCTCTCCCTATCGGTCGAGCTGCTTCG
1 CCCCTCTCCCTATCGGTCGAGCTGCTTCG
418730 CCCCTCTCCCTATCGGTCGAGCTGCTTCG
1 CCCCTCTCCCTATCGGTCGAGCTGCTTCG
418759 CCCCTCTCCCTATCGGTCGAGCTGCTTCG
1 CCCCTCTCCCTATCGGTCGAGCTGCTTCG
418788 CCCCTCT
1 CCCCTCT
418795 TTCACGAGAC
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
27 4 0.04
28 4 0.04
29 77 0.73
30 12 0.11
31 4 0.04
32 4 0.04
ACGTcount: A:0.07, C:0.46, G:0.18, T:0.29
Consensus pattern (29 bp):
CCCCTCTCCCTATCGGTCGAGCTGCTTCG
Left flanking sequence: Indices 418142 -- 418641
CAAAAAACCCTACATTAGCAGTTCGGGTGGAATCAGACATAAACCAAGTCCAAGAAGACCGAGGA
GGCCTTGGGGAGAAGGTAGCGCACTAATTCGATTCTCCTTTCCTGCTACTAGGGAAGCGCGTGCT
ACTGCTACTACTTTTGCACCTGCTTCTCCTATTATAGTGGAATGAACTCCTACGCCTGGAACTCC
TCTTTACCGCATTTCTTCCTCTTCTGCAAGAGTCATGTTCACTGCTCCTGCACCTCTAACTTCAA
CAGGAACTTCCGCATCTCTATTCGCATCTTCCTCATATGTAGTCTCTACGCTTGAAAAAAAAAGG
CTTTTTGATCAGAAACGACTACAAGTGCGTGCATTTCCCTATCAATGCCCTTGAACTAACCTCAA
AGGTTAGGCACGAAGGGCATTCTGAGGATGTATTTCATCAGCCAGGCACCCAACTATTTCTTTTT
TTAAAACTGCTCCTTCCCCTCGTCAACGAGACTGCTTCGCTCCTT
Right flanking sequence: Indices 418795 -- 419294
TTCACGAGACTGCTTCGCTCCTTCGTCTCCTGATAACATTTGTATTGCTACAATCATGCTGACCG
ATATGCAACTGACTGAACAGGACATATGGCCGGGCAGGACGGCTTTGCTTAAGACCGGAATGCTA
CCCCCGCTCGAACTCAAGAACGAAACTCAAGTCATTGCTCATTCCCGCTCATGCTTGCTATAACA
ATTCCTTACGAGAGGCTACTAGACTTGTCTAAAAGAAGAAAAGATGCACGAGCCACTCTTTCTCT
TATATACGCTATTTGAATCTCGTGATTTGAATTGAAGGCCTATCCCCTGCCTATGCGCTTGCCTT
TACTACCTGCCCTTACCTGCCTGCCTTGAACTACTGCACTTGCGCATACCTTTTCTTGCTCGAGA
CAGAAGATAGCTTGAACTGGCATTGTAAAGATATATAGCCAATAGAAAGAAGTATTCCCATGGAG
AGAAATGGAATTTCAAGGCTTTCTACCAAAGGGGAATCGAGAGAT
Found at i:422642 original size:18 final size:18
Alignment explanation
Indices: 422602--422643 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
422592 ACCGCCCTGC
422602 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
422621 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
422638 CATAGT
1 CATAGT
422644 GGTTGAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.24
17 1 0.05
18 15 0.71
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 422102 -- 422601
CTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTT
GGAGCGAATAGGATGATCGGGCCGAGGGCAGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATAT
GAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGTCCGGTCGCCCTACGCGACTGGCGCGG
CCGAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACCTTTTTTTGTTATCTA
AAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGGCGGGCTCCGGCTCC
GCGCACCTGCTGACACCTTTCGAAGCACTTTCGAGTGTGCGCTTTAGTTTTCGAATGTGTCGTTC
AGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTTAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCTCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 422644 -- 423143
GGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACC
CCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAAC
TCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGG
CACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGT
ATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGAATGGA
AGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAG
TAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGA
ATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACC
Found at i:439778 original size:14 final size:14
Alignment explanation
Indices: 439759--439786 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
439749 ATTTCTTTGT
439759 CTTCATATACCATA
1 CTTCATATACCATA
439773 CTTCATATACCATA
1 CTTCATATACCATA
439787 TAAGGTACGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (14 bp):
CTTCATATACCATA
Left flanking sequence: Indices 439259 -- 439758
TTGAGATAAATAGTCTTTTTTGTGCAATTCCAAATGTGAAGTAAGTCTTCGTATCTTATTGGTGA
AATTGAATACTTGAAATTCAACAGATCCTCCATTTTCTTTTTTTTCTTCTTGCGAAATAACTGAG
CTGAATGAATTTTTTACCATAAAATGACCCCTCCTTTTTTCTTTTTTTAGAAATTATTATTGATC
AGTAATAATAATGTTACTCATTTTAATTTGATATACACAATAATCTTAATTTGATTAAGAATTTC
TATTCTTTTTTTTTATAAATTAATACAATCCAATTTTGAAAATTGGATTCAGATAGGTATACAAA
AGGCTGGTATATTTCTGCACGCACAAAAAATATTTAGACTGAAAACTGAAATTTCAATTTCAAAT
TAAATAAGAATATTTTCTTGATTCATTTCTAAATCTAATGGATACGTCATTGAATTAAATTAATA
TCATCTATCAGAATGTCAGACAGTGCCATATGTGTATTTCTTTGT
Right flanking sequence: Indices 439787 -- 440286
TAAGGTACGGGCAATATAGGAAAAATTTAGCATTAACGAATTTTCAATTGTGGATACATATGGAT
CCTTAGCATACTAAAACGACTGCTATTATTGGTATCAAACCAATAACGATTCATACAAGCTAAAT
CTTCTAATCGATAATTGGGCCAAAGAAAGAACTTTAATTTATTTAGTTTATTTTTATATCTATCA
AGATGTTTGCTTCTTTTATCTAAAACTTGCTCATGAGTTTTCGTCTTATTTGCATTGTAAAATGC
TGTATTTCTATGGATATCATTTCTATTCCGAGAATTGAAACAAATTAGAATTCTGAACTCTCTAC
GACCTCTGGGGGATAAAATATTTTCCGGAACAAGCAAATCATAATGATTGCTGGTTCTATTTTCA
TTCGTTTTTTGATGTCTTATCAGTATCGCCTTTTTCTTGATATCTTTGATTAATTGGGTACTTAT
TCTTATGAACTAATGAAATACCTATGGTTTGAGACATAATAAATT
Found at i:448495 original size:39 final size:39
Alignment explanation
Indices: 448441--448519 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
448431 CGATTTTCTA
*
448441 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
448480 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
448519 T
1 T
448520 AATGGATCGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 447941 -- 448440
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCCGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCGAAAAAGGGAGAAATTTGCACTACTTGGTGAAAGAGGTTCTTTTAGAATCAATTTCAAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACTGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 448520 -- 449019
AATGGATCGGACCTTTTCTCGAAAAACACCGGATCCCGAGAAGAGTTGAAGATGGTGCAAGATCG
AATCCTCTTACCTTACTTCGAATGGAAGCTTAGCCCGCCTCACTTGCTTTCTTTACTGCATAAGG
GCATAAACGAAGTCAACGGATTTCCTTCTAACTAGCGGCTGAGAGTAAGCAAGCTACCTTCATTC
AACAGATTTGTGGTTGAGTCAATAACATGCTCTGGGTCGGGAATCTTTGCTCTTCTCTTTTGCAT
TTCCGCTGCCTGCGTTCTTTTTTGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCCAGCTGTAAT
GGTTGAAAATAGGGGGCCAACCAAGACCCCCTAATAAAGCTTTGTTCGATAAAGCAAACGATTCG
TTCCGACAACTTCGGACCAGATTAACCCCTTTGAATTAGCCGATCTTACAAAATCGATCGGGCGG
GCTGGTTGGGAAGGGGTTATTTGTGGAGAAAAGAATCGCTGAGAG
Found at i:449286 original size:16 final size:16
Alignment explanation
Indices: 449265--449296 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
449255 CCAGCCGGTA
449265 ATATATATTAATTAAT
1 ATATATATTAATTAAT
449281 ATATATATTAATTAAT
1 ATATATATTAATTAAT
449297 TTTGAAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATATATTAATTAAT
Left flanking sequence: Indices 448765 -- 449264
TCTTCTCTTTTGCATTTCCGCTGCCTGCGTTCTTTTTTGTGTCCGTCCGTATCGCAAAGCTGGTC
GACGCCAGCTGTAATGGTTGAAAATAGGGGGCCAACCAAGACCCCCTAATAAAGCTTTGTTCGAT
AAAGCAAACGATTCGTTCCGACAACTTCGGACCAGATTAACCCCTTTGAATTAGCCGATCTTACA
AAATCGATCGGGCGGGCTGGTTGGGAAGGGGTTATTTGTGGAGAAAAGAATCGCTGAGAGATAGA
TTCGACTATTTGGTCAGGACGAATGAGTGGCTGTGCAGCATGCTCCGGAGGAGATTGACCCTGAG
AGTCAGTCCAGTCAGAAAGGGGAGGGCCCGCTGTCTAGACTGCATTTCGGGAGTTTGAACACCAT
CCCATTTCAACCAAAAAGACAACCCTGTCAAAGGTATCTAACCTTCCTTCCTTATGAGTGGAAAT
CCAATTCCGTTTTGTCTTTTTTGCATAAAAACCAGCCAGCCGGTA
Right flanking sequence: Indices 449297 -- 449796
TTTGAAACCCGTTCTTCCGACCTGAAAAGCGCATAGTTTCTCCTCAAAAAAAGACCTCTCCCGTC
AGGGAGCGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCCACGTTAGCCCCAAG
ACGAGTAAATGCTTGAGCTTAAGTGAGAAGGGCCTCCTCCCCCCGCTGGTATTTTGCCTGTATGG
TGTTTACCGGGGGACCCTCGATCCGGAAGGTATGCCACTATCGGCTACTATCGAGATATACATGT
CTGCCTCCCTTGAAAGCTCCTGGTGCTGCGACTATCACCGGTAAGTTGCGTCGGATCAACATCGG
GATTAGAATCCACTGCAAAAGCAACTAAGTCAACGCCTATTTGCTCTGGATCTACTGGCCCGGAC
GCTTGAATCTATTCCACCGCAAACAACCGAATATACTACTGCTGGATCTTCCGCTGCTTCTGTTG
TTATTGTTCTCACCTGTCACTACGCCACCTCAGCAGCTGGGACTG
Done.