123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_050067
Parameters: 2 7 7 80 10 50 500
Length:  460333

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3086--3128	20	2.2	20	82	0	50	41	13	18	25	1.88
3179--3221	20	2.2	20	82	0	50	41	13	18	25	1.88
3227--3390	70	2.3	70	90	0	247	40	20	16	22	1.91
72737--72819	21	3.7	23	75	18	77	13	22	9	54	1.68
72759--72826	21	3.2	21	82	0	82	11	22	7	58	1.57
75146--75202	18	3.2	18	92	0	96	31	5	26	36	1.79
101576--101611	18	2.0	18	94	0	63	5	25	5	63	1.38
116623--116656	17	2.0	17	100	0	68	35	11	5	47	1.65
123113--123159	17	2.8	17	93	0	76	53	4	0	42	1.20
135571--135626	27	2.1	27	96	0	103	3	48	14	33	1.61
195009--195040	16	2.0	16	100	0	64	25	31	0	43	1.55
211204--211246	20	2.2	20	82	0	50	41	13	18	25	1.88
211297--211339	20	2.2	20	82	0	50	41	13	18	25	1.88
211345--211508	70	2.3	70	90	0	247	40	20	16	22	1.91
214462--214495	16	2.2	15	89	5	50	47	0	0	52	1.00
274151--274182	16	2.0	16	100	0	64	25	6	25	43	1.77
301106--301152	18	2.7	18	83	3	60	42	21	8	27	1.81
303700--303753	19	2.9	20	86	13	71	53	3	0	42	1.18
303708--303753	19	2.5	19	92	3	76	56	4	0	39	1.19
305231--305260	15	2.0	15	93	0	51	56	6	23	13	1.60
314751--314778	14	2.0	14	100	0	56	50	14	7	28	1.69
320578--320643	32	2.1	32	97	0	123	40	24	9	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374824--374849	13	2.0	13	100	0	52	53	0	7	38	1.30
375696--375743	16	3.0	16	79	11	62	43	4	6	45	1.48
404860--404915	27	2.1	27	96	0	103	33	14	48	3	1.61
404887--404979	35	2.7	35	71	15	93	31	16	40	11	1.84
418622--418818	59	3.4	59	82	9	285	8	43	18	29	1.79
418642--418794	29	5.2	29	80	10	195	7	45	18	28	1.75
422602--422643	18	2.3	18	80	19	52	19	19	26	35	1.95
439759--439786	14	2.0	14	100	0	56	35	28	0	35	1.58
448441--448519	39	2.0	39	97	0	149	21	27	18	31	1.97
449265--449296	16	2.0	16	100	0	64	50	0	0	50	1.00

Tables:   1

The End!