123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_049134
Parameters: 2 7 7 80 10 50 500
Length:  967100

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13103--13163	28	2.3	26	75	8	68	27	19	26	26	1.99
30290--30408	40	2.8	42	82	7	170	10	29	33	26	1.90
31102--31138	19	1.9	19	94	0	65	18	29	13	37	1.90
60984--61018	13	2.5	14	86	13	54	42	20	22	14	1.88
69121--69151	15	2.1	15	93	0	53	32	16	22	29	1.95
77026--77067	21	2.0	21	95	0	75	28	16	9	45	1.79
80410--80451	21	2.0	21	100	0	84	42	23	0	33	1.55
87011--87052	15	2.8	15	81	0	57	19	26	40	14	1.89
97503--97545	18	2.4	17	77	11	50	32	25	23	18	1.97
107121--107156	18	2.0	18	100	0	72	33	16	22	27	1.95
107553--107598	19	2.4	19	88	0	74	23	15	23	36	1.93
118655--118679	13	1.9	13	100	0	50	4	0	32	64	1.12
126244--126289	22	2.1	22	95	0	83	30	17	36	15	1.91
130682--130780	51	2.0	49	86	9	137	31	21	23	24	1.98
170554--170587	16	2.1	17	94	5	61	44	23	26	5	1.76
186030--186142	52	2.4	45	81	18	163	27	19	24	28	1.99
186042--186142	52	1.9	52	97	0	193	28	20	23	26	1.99
195953--195995	17	2.5	17	88	0	59	32	16	6	44	1.74
222837--222886	27	1.9	26	88	8	75	30	28	28	14	1.95
233661--233708	24	2.0	24	83	0	60	20	14	31	33	1.93
260741--260785	6	7.5	6	87	0	63	15	35	40	8	1.79
260741--260787	18	2.6	18	96	0	85	14	34	42	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296964--297075	42	2.6	42	85	1	143	34	15	26	23	1.94
311740--311800	28	2.3	26	75	8	68	27	19	26	26	1.99
328971--329093	40	2.8	44	78	12	164	10	30	34	25	1.89
329786--329822	19	1.9	19	94	0	65	18	29	13	37	1.90
357991--358030	18	2.2	18	100	0	80	5	30	5	60	1.40
410870--410901	16	2.0	16	100	0	64	43	0	12	43	1.42
412061--412149	44	2.0	44	93	0	151	30	19	29	21	1.97
413081--413112	5	6.4	5	96	0	55	40	3	15	40	1.63
422060--422093	17	2.0	17	88	0	50	41	23	11	23	1.87
433890--433940	25	2.0	25	84	0	66	49	3	19	27	1.66
444818--444855	20	1.9	19	85	15	51	23	26	10	39	1.87
464795--464825	15	2.1	15	93	0	53	19	29	19	32	1.96
470229--470281	21	2.6	19	77	16	61	7	32	22	37	1.82
492497--492538	21	2.0	21	90	0	66	47	14	26	11	1.78
507696--507728	12	2.8	12	90	4	50	18	72	0	9	1.10
521664--521868	51	4.0	51	100	0	410	23	31	35	9	1.87
618312--618390	39	2.0	39	95	0	140	27	29	21	21	1.99
637861--637886	13	2.0	13	100	0	52	15	23	23	38	1.92
639219--639250	15	2.1	15	94	0	55	43	15	9	31	1.78
669853--669892	18	2.3	18	91	8	66	25	20	30	25	1.99
721560--721609	25	2.0	25	88	0	73	14	26	20	40	1.90
721829--721893	30	2.2	30	85	0	94	21	36	15	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793732--793802	31	2.3	30	78	7	72	40	8	25	25	1.83
823490--823546	27	2.0	29	83	6	73	42	15	26	15	1.87
851043--851085	21	2.0	22	90	4	70	32	23	11	32	1.90
862961--863004	16	2.9	16	80	16	58	20	6	0	72	1.07
897078--897104	13	2.1	13	100	0	54	29	14	14	40	1.86
909549--909625	19	3.9	19	88	6	118	28	19	16	35	1.94
909547--909625	40	2.0	40	100	0	158	27	18	17	35	1.94
951568--951620	6	8.8	6	82	0	61	7	41	35	15	1.75
951578--951624	18	2.6	18	96	0	85	8	42	34	14	1.77

Tables:   1

The End!