Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_045039
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 601574
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Found at i:33536 original size:29 final size:29
Alignment explanation
Indices: 33504--33594 Score: 105
Period size: 29 Copynumber: 3.1 Consensus size: 29
33494 CCGGAAGGGA
33504 GAGGTTCGTAAGAACTCGGCCGAAAGGTC
1 GAGGTTCGTAAGAACTCGGCCGAAAGGTC
* * * **
33533 GAGGGTT-G-AAGACGCTCGACCGGAAGGGA
1 GA-GGTTCGTAAGA-ACTCGGCCGAAAGGTC
33562 GAGGTTCGTAAGAACTCGGCCGAAAGGTC
1 GAGGTTCGTAAGAACTCGGCCGAAAGGTC
33591 GAGG
1 GAGG
33595 GTTGAAGACG
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
28 8 0.17
29 32 0.67
30 8 0.17
ACGTcount: A:0.27, C:0.19, G:0.40, T:0.14
Consensus pattern (29 bp):
GAGGTTCGTAAGAACTCGGCCGAAAGGTC
Left flanking sequence: Indices 33004 -- 33503
AATTAGGGGAAGCAAAGCTTCAACAAGTAGAAGCTTCCGCTTCAAACAAAGAGGTTGGGCTGTTC
ACTTCATTGATTTGACTTCACTTTACTTAAGATTAAAGATAGGGGCCGGGCGGGCAGTGAAGGCT
CGTTTAGTAGACAGCAAGCTACGGCTTTTACGAGCAGCAAGCACCTACCTACTCCTATAAAAATG
AAAAGAAGCAAGCGGAGCTTGAAGAAGCGAGCCCCCATCAGAGAAAGCCATTGCACGCTAGCCTC
TTGTATAGGGTTCCAAACCTGCGCACCCCTAAACTACAAGCTTTGAAGCCCCTACTTTGTTGGGA
TATTGGAAGAAGCCCCTTTCTACAAACCTTTCTATAATATAAGGGAAGCTCTTCGAGCTTTCTTC
GCATGCTTGAGCGCATCTTTCCCCTTTCTATTAGTATTAGTAAGGTTGTCAAAAGGTGGGTTTCT
TACTTAGTGCTTGTGCTAAGGAACGAAGTGCTCGACCGGAAGGGA
Right flanking sequence: Indices 33595 -- 34094
GTTGAAGACGCTCGACCAAACAAGCAACGGCTGACGAGATAGGGGCGCGCGTTAGCGAAAGCCTA
TAGCTAACGCGCATCCGTTTTCTTGCTGGAGTGAATTTCTCAAAGTCAACTTTCTCGCTTCTTGC
TTTAGAAAGATTGCAGGGGCGCGTTAGCGCCCTTCCTTCAGCTGGCTCCGCCCTATCTATTCATC
TCTTTTTTCAAATGGATATTTAGGGATCTATCTTGTTCATAGATCTTGAAACCAGATCAATATCC
ATTTCTCAATATATCTTGATATCTATCGATAGAAAGATATAGATCTCTATCTGGCCATATCTAAA
TATGGAAGAACCAACACTGAAAGGGCGTAACCAACGGAAGGTTCTCACCCTGTCCCCGACATTGT
TCTCCGACGATGCCCCCTGGGCGAAAGGGGCCACCATTCTCTTTCTTTCTTCAATCGTTCCGATC
AGGACAAGTGGGTTGGTTTCGTCCTTCTATCTACGCAATTCTCTG
Found at i:33578 original size:58 final size:58
Alignment explanation
Indices: 33488--33611 Score: 248
Period size: 58 Copynumber: 2.1 Consensus size: 58
33478 GGAACGAAGT
33488 GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
1 GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
33546 GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
1 GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
33604 GCTCGACC
1 GCTCGACC
33612 AAACAAGCAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.27, C:0.21, G:0.39, T:0.14
Consensus pattern (58 bp):
GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
Left flanking sequence: Indices 32988 -- 33487
ATTTATTGTTTTTTGGAATTAGGGGAAGCAAAGCTTCAACAAGTAGAAGCTTCCGCTTCAAACAA
AGAGGTTGGGCTGTTCACTTCATTGATTTGACTTCACTTTACTTAAGATTAAAGATAGGGGCCGG
GCGGGCAGTGAAGGCTCGTTTAGTAGACAGCAAGCTACGGCTTTTACGAGCAGCAAGCACCTACC
TACTCCTATAAAAATGAAAAGAAGCAAGCGGAGCTTGAAGAAGCGAGCCCCCATCAGAGAAAGCC
ATTGCACGCTAGCCTCTTGTATAGGGTTCCAAACCTGCGCACCCCTAAACTACAAGCTTTGAAGC
CCCTACTTTGTTGGGATATTGGAAGAAGCCCCTTTCTACAAACCTTTCTATAATATAAGGGAAGC
TCTTCGAGCTTTCTTCGCATGCTTGAGCGCATCTTTCCCCTTTCTATTAGTATTAGTAAGGTTGT
CAAAAGGTGGGTTTCTTACTTAGTGCTTGTGCTAAGGAACGAAGT
Right flanking sequence: Indices 33612 -- 34111
AAACAAGCAACGGCTGACGAGATAGGGGCGCGCGTTAGCGAAAGCCTATAGCTAACGCGCATCCG
TTTTCTTGCTGGAGTGAATTTCTCAAAGTCAACTTTCTCGCTTCTTGCTTTAGAAAGATTGCAGG
GGCGCGTTAGCGCCCTTCCTTCAGCTGGCTCCGCCCTATCTATTCATCTCTTTTTTCAAATGGAT
ATTTAGGGATCTATCTTGTTCATAGATCTTGAAACCAGATCAATATCCATTTCTCAATATATCTT
GATATCTATCGATAGAAAGATATAGATCTCTATCTGGCCATATCTAAATATGGAAGAACCAACAC
TGAAAGGGCGTAACCAACGGAAGGTTCTCACCCTGTCCCCGACATTGTTCTCCGACGATGCCCCC
TGGGCGAAAGGGGCCACCATTCTCTTTCTTTCTTCAATCGTTCCGATCAGGACAAGTGGGTTGGT
TTCGTCCTTCTATCTACGCAATTCTCTGTCTTCGTTCGTGATCAT
Found at i:33608 original size:29 final size:29
Alignment explanation
Indices: 33518--33608 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 29
33508 TTCGTAAGAA
33518 CTCGGCCGAAAGGTCGAGGGTTGAAGACG
1 CTCGGCCGAAAGGTCGAGGGTTGAAGACG
* * *
33547 CTCGACCGGAAGG--GAGAGGTTCGTAAGA-A
1 CTCGGCCGAAAGGTCGAG-GGTT-G-AAGACG
33576 CTCGGCCGAAAGGTCGAGGGTTGAAGACG
1 CTCGGCCGAAAGGTCGAGGGTTGAAGACG
33605 CTCG
1 CTCG
33609 ACCAAACAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
27 3 0.06
28 8 0.16
29 28 0.56
30 8 0.16
31 3 0.06
ACGTcount: A:0.25, C:0.21, G:0.40, T:0.14
Consensus pattern (29 bp):
CTCGGCCGAAAGGTCGAGGGTTGAAGACG
Left flanking sequence: Indices 33018 -- 33517
AAGCTTCAACAAGTAGAAGCTTCCGCTTCAAACAAAGAGGTTGGGCTGTTCACTTCATTGATTTG
ACTTCACTTTACTTAAGATTAAAGATAGGGGCCGGGCGGGCAGTGAAGGCTCGTTTAGTAGACAG
CAAGCTACGGCTTTTACGAGCAGCAAGCACCTACCTACTCCTATAAAAATGAAAAGAAGCAAGCG
GAGCTTGAAGAAGCGAGCCCCCATCAGAGAAAGCCATTGCACGCTAGCCTCTTGTATAGGGTTCC
AAACCTGCGCACCCCTAAACTACAAGCTTTGAAGCCCCTACTTTGTTGGGATATTGGAAGAAGCC
CCTTTCTACAAACCTTTCTATAATATAAGGGAAGCTCTTCGAGCTTTCTTCGCATGCTTGAGCGC
ATCTTTCCCCTTTCTATTAGTATTAGTAAGGTTGTCAAAAGGTGGGTTTCTTACTTAGTGCTTGT
GCTAAGGAACGAAGTGCTCGACCGGAAGGGAGAGGTTCGTAAGAA
Right flanking sequence: Indices 33609 -- 34108
ACCAAACAAGCAACGGCTGACGAGATAGGGGCGCGCGTTAGCGAAAGCCTATAGCTAACGCGCAT
CCGTTTTCTTGCTGGAGTGAATTTCTCAAAGTCAACTTTCTCGCTTCTTGCTTTAGAAAGATTGC
AGGGGCGCGTTAGCGCCCTTCCTTCAGCTGGCTCCGCCCTATCTATTCATCTCTTTTTTCAAATG
GATATTTAGGGATCTATCTTGTTCATAGATCTTGAAACCAGATCAATATCCATTTCTCAATATAT
CTTGATATCTATCGATAGAAAGATATAGATCTCTATCTGGCCATATCTAAATATGGAAGAACCAA
CACTGAAAGGGCGTAACCAACGGAAGGTTCTCACCCTGTCCCCGACATTGTTCTCCGACGATGCC
CCCTGGGCGAAAGGGGCCACCATTCTCTTTCTTTCTTCAATCGTTCCGATCAGGACAAGTGGGTT
GGTTTCGTCCTTCTATCTACGCAATTCTCTGTCTTCGTTCGTGAT
Found at i:39924 original size:18 final size:18
Alignment explanation
Indices: 39890--39925 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
39880 GAAATAGTAA
*
39890 GCTATGACTTATCTCCTG
1 GCTATGACTTAACTCCTG
*
39908 GCTATGACTTAAGTCCTG
1 GCTATGACTTAACTCCTG
39926 CTTTCGTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (18 bp):
GCTATGACTTAACTCCTG
Left flanking sequence: Indices 39390 -- 39889
GACCCGGAAAGAAGTCCCAGAGGGCAGAGGTAAGTCGTTCAGGAAGATTAATGTCTTTTTGCCGT
CTGACTAATGCCTTAAATAGAAGACGGACGAAAGAAAAGCCTTAGGCTCGGAAAGCGTCTGATCT
AACTACACCCATTTCATCACTTACTAATCCCTTCGCTCCCCTTTAAGCAGTTAGACGCCCTACTC
GATTGAGACTAGCCCCTCTGCCGAAGCAGCAAATCGGTCATCTTCTTTTGGTGCAATCCAGTTCT
CCTAAGACTAAGAAAAGAAGAGGTAACTAAGAAGAAATCCATGAGTTTGATTTCCTTCTAAAATG
GAACTTCGGACAACTGTAACTTCTCTTCCAACTTCAGTCCGGACTGTAATGCAAGAACAATAGAA
GAGTTCTTGCTTTCCTTGTTAACAATTTACCCGGTAACTGTACAAATCATACTACAATCAATTCT
TTGCTAGCTTCGGAAGGGCTTGATTCACACAAAGAGAAATAGTAA
Right flanking sequence: Indices 39926 -- 40425
CTTTCGTAACTCTAAATAGAAAACGGAATCGTAAACTTCTTCCTTCTCTTTTTAGATGTCTTGAA
AAGAGTTATAAAGAGGAAGAACGGCGGGCTAGTATTAAACTCAATCTTAATCTCTGGTCTCCTCA
AGCAACTAAGTCTTAACTGTCCGGGAAGACAGGAAGGCAAAATGAGAAGTTGCTTTGTTGCTGCT
CTGTAACTTCACCCTAGATAGACCTTCTGGAACACAGACGAAATCTATCGTTTCCGGTGAAAAGA
GGTGAATCCCCGGGAGGCGGGATGAATTGATCTTTTAGCAGTTGATTTACGGCATTTCCTCAGCC
TCAAGTTTCTTCTGACTTCCGGTTGTTTTTCTCTATAGTACCTAATTCCGGAATTCAGGAAATCC
CTTATAGGGGTTAAAGAGGGGAAAGTCTTTACTTGATTCGAACTTACAACCTGGCCTTACAGATC
CAACTTCTGGTAATTCTGTAACAGCTACATCAAATCCTAACAATC
Found at i:45512 original size:18 final size:18
Alignment explanation
Indices: 45489--45530 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
45479 AGAGACTTGA
*
45489 TTGCTTCCTATCCATTTC
1 TTGCTTACTATCCATTTC
* *
45507 TTGCTTACTCTCCCTTTC
1 TTGCTTACTATCCATTTC
45525 TTGCTT
1 TTGCTT
45531 GTTCTTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.07, C:0.33, G:0.07, T:0.52
Consensus pattern (18 bp):
TTGCTTACTATCCATTTC
Left flanking sequence: Indices 44989 -- 45488
GGGCCGGGGGATACACCTACGAATGAGTGGTTCAGTCCTGAAATAATTGGACTAACCTTCAATAA
TGACTTCCGCAACATCGACATGATGGTGACACCTTTTACATAAGGAATGCACCCTAAGGTGTCAA
TCTAAGGGTCTCGTGTTAATCCTTCCATTAACCGAGTGGGGTTGACAGTAGTATACTATCCTCTC
TTAGACCAGGGATCCTGTCCCATGGACGGCCCAAAGAGAAGCAAGCCACCATTGTTGCCCCTTTT
GGGATACATCTTGACCTTGCGATCAGGACGTACACAGCATGACATGCTGTACGTAAACCGTTTTC
ACGGTACGCCCCGCTGGAGTGAATCCTTCAATTAATTTCGTTATCATTTGAATTTCTCATACCTA
TCTCTTTGATCATGGGCTATCAAGATACACTCATACCCACCTAAGAAAGGTGGGATTCTATCTCC
CACCAGACTGCCTATCCAGATTACCATACTCACTAAGAGACTTGA
Right flanking sequence: Indices 45531 -- 46030
GTTCTTTTTCTACATTTGCTTCCTCCGCACTCAATGAACAATCAGATGCGGGATTACCTGTAGAT
TGCGGTGTGCTTGTCTTGGTTGATTTCGCATATCTCTTTCTTGTTCTTGGGCAAGCTGCTCTTGC
TCAAGTGGAATCAGTTGCAGTTGGCATATATAAATAAGTAGAAGATCCTGTCTTCTTTTATTAAG
GAATTTCTAGAGAGGAATCCCCTGGCCTTAGCTCATCTAGCCGTAGCTCATTGGGCGGATTGCTT
TGAATAGCCAAAGTCTTTTGAAAGAGAAGAATCGACATTCTTGGATTAGGCTGGTGCTATCTCTT
ATTTAAGAGAAATAATAAGGAGAAAGGCTGCCTTAGGTTTAGGAGTTTCGAGTTATCTCTGCTTT
CATAGCCTAGTTTCGTAGCCTTGGTGCCTAGCCTTCTGCTTCTGATCCCGGGAGAATAAAATAAT
AAGAATGGCTGTTGTTGAATCAGCTGTGAAAGACGCTCTTGCCTC
Found at i:84412 original size:25 final size:24
Alignment explanation
Indices: 84374--84420 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
84364 CCGCTAGCTG
84374 TCACTCCTTGCCCTATTCGGTCGCT
1 TCACTCCTTGCCCT-TTCGGTCGCT
84399 TCACTCCTCT-CCCTTTCGGTCG
1 TCACTCCT-TGCCCTTTCGGTCG
84421 AGTTCTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.38
25 12 0.57
26 1 0.05
ACGTcount: A:0.06, C:0.43, G:0.15, T:0.36
Consensus pattern (24 bp):
TCACTCCTTGCCCTTTCGGTCGCT
Left flanking sequence: Indices 83874 -- 84373
TCCTCCGACCCGGAGTGGATTCTAGGGGAAGGGCAGAGCCTCACCTTGCAGTAGGAAGGTGTTCG
TTGCTGGGACGGGTTCAAACTGGACTGAAGGGAGGAGGAATTAAATAGTCCTCTCTTCCTGGGGA
TTCATCACTGGCTAGGGCTTTCGAATCAAAGCATGGGCATCCGCAACTAAGAGGGAGCAGTAGAT
CGTCGATTGAAGAGCCAGGTCAGTAAACTTCTATTGGGACTTCTATTGATTATTGATTCTACTAT
TGGGACTCCTAGCAACAAACTTGTATGACGGGGCCCCCATGGAGACGCAGGAGATGCAGGAGCCG
CCAGCCGGATCGACCAATAAATGATAGGCCAGAGGGATGGGCTCATTCGACTAATTAGTGATCCC
TGGCCCTACCTAACAAAGAGATGTCCCTAAACTAAAATAGGGGATTGGTTGATCGGAAAGCTCGG
GCAGGAGTAGGACATTCCATAAAAATCTTTCTGATCCGCTAGCTG
Right flanking sequence: Indices 84421 -- 84920
AGTTCTTACAAACCTCTCAAATCCTATTTTTTCATCGACAGGTAGGGTGAATTCTAAGGTTCCTT
ATTCTGGTTGTAAAGCGGAAGAAGAGGGAGAAAGAATGGGCACAGCCCCACCAGCAGCCCGCGTT
TTCGACCCGAAAGGAATTGAAAATGAAACAAGAATCTGTGTTCACTATCTATGGAGCGGAGTGAC
TATCCTTAATCTCCTCTTCCCTATCTCCCCCTTGCCTTTTTTTCTTGGCCATTTCTTTTTTTGTA
TTGTTTATTATGATTGATCTGTAGTTCAAGGGCACTCTTCCTAATCCGAGTTTAAGATGGAATAA
GACCCAGACGTAGAGTCCCGTCGGCCGGGAAGGGATTTTTTCTATTGATTTTTTATTCCCTTCAG
TCCTTACCTTTAAATAAGGGATTCTTCTCTTTCCCCACGAGGGAAAGCCCTTCCCAGATGGAGTA
GTGCATCTCTGTCTTGAAAGCCCGCCCTACATATAGGAGTTCCTA
Found at i:85973 original size:58 final size:58
Alignment explanation
Indices: 85883--86006 Score: 248
Period size: 58 Copynumber: 2.1 Consensus size: 58
85873 TTGCTTGTTT
85883 GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
1 GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
85941 GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
1 GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
85999 GGTCGAGC
1 GGTCGAGC
86007 ACTTCGTTCC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.14, C:0.39, G:0.21, T:0.27
Consensus pattern (58 bp):
GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
Left flanking sequence: Indices 85383 -- 85882
TGGGCTGGGCGTCCATGTCACAGAACCTTTCTTCTAGCCAAGAATCCCATTATTGATCGAATCGG
GGCGGATCCAATTCATTGGCAAATGAAAAATCTACTGTTTTAACACTCAGAAAAAAACCTAGAAA
AGAGGAAGAGTCACTAAGACAAGAGCTAGGTAAGCAAGAAGGAGAGGCTAGAAAAGGCGAGGCAA
GGGGCTCTCCATCTCTAGGAAGATTGTGTCCAGGATCTGGTAATCTAAGCCTTGCTTCTTCTGGT
CGGCTCGTATTAGCCTGTGCTTTATTACAGGTAGTCATTCCCCCCGTTCCTTTAGTCTTTTCAAC
GTTGAATCTTAAGTCGCGGTCATGTCTCGCCCCCCCAGTATAGTGACCGATTCCATGTTTCCCCC
GAATTTAATCAGTTCCAGGCTCTCATTCCTCTCCCAGCAAGAAAACGGATGCGCGTTAGCTATAG
GCTTTCGCTAACGCGCGCCCCTATCTCGTCAGCCGTTGCTTGTTT
Right flanking sequence: Indices 86007 -- 86506
ACTTCGTTCCTGACTTGTACAAGTCAGTGAGAAATCCCTCTGCTCATCCATCTTCATTCCAAAGG
CGAACATTTCCATTGAGTGACTGTAACTGCTATGGTTTACAGTCAATAGTTCTTAACCAACCCTT
TCTCGCCGAGCTTTAGAAAGCTTTAAGAGAGAAGAGTAAGGGGGACCTTTTCTCCTGCGGAGCCC
TTCAGAAAGTCACCGGCGGCCGGTAGCTCTACTAAGCGAAGAACCGCTCGCTGCCTTTTCTTCGC
GAATAACATGTGCAGGTAGCCGCCTAGGAGAAGAGAAGCAAGCTACCTTCGCCTACCTCCCATCT
ATATCTATAGGCGGCAATGGTAAGAGCTGGTAAGCATGGTAACTGTATCGGCGGCCGGGGCCGGC
GCTCCGCGTTCTATCTAGGTTCCGCTCTTACGTACGCCCCACCTCACATAGAAGAAGGGGAACCC
CTTCCATAGAAGAACCCGTGTGGGTGGGAGGGGATTGAATCATTC
Found at i:85996 original size:29 final size:29
Alignment explanation
Indices: 85906--86005 Score: 107
Period size: 29 Copynumber: 3.4 Consensus size: 29
85896 CAACCCTCGA
*
85906 CCTTTCGGCCGAGTTCTTACGAACCTCTC
1 CCTTCCGGCCGAGTTCTTACGAACCTCTC
* *
85935 CCTTCCGGTCGAGCGTCTT-C-AACC-CTC
1 CCTTCCGGCCGAG-TTCTTACGAACCTCTC
*
85962 GACCTTTCGGCCGAGTTCTTACGAACCTCTC
1 --CCTTCCGGCCGAGTTCTTACGAACCTCTC
*
85993 CCTTCCGGTCGAG
1 CCTTCCGGCCGAG
86006 CACTTCGTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
27 3 0.05
28 8 0.14
29 35 0.61
30 8 0.14
31 3 0.05
ACGTcount: A:0.13, C:0.39, G:0.20, T:0.28
Consensus pattern (29 bp):
CCTTCCGGCCGAGTTCTTACGAACCTCTC
Left flanking sequence: Indices 85406 -- 85905
AACCTTTCTTCTAGCCAAGAATCCCATTATTGATCGAATCGGGGCGGATCCAATTCATTGGCAAA
TGAAAAATCTACTGTTTTAACACTCAGAAAAAAACCTAGAAAAGAGGAAGAGTCACTAAGACAAG
AGCTAGGTAAGCAAGAAGGAGAGGCTAGAAAAGGCGAGGCAAGGGGCTCTCCATCTCTAGGAAGA
TTGTGTCCAGGATCTGGTAATCTAAGCCTTGCTTCTTCTGGTCGGCTCGTATTAGCCTGTGCTTT
ATTACAGGTAGTCATTCCCCCCGTTCCTTTAGTCTTTTCAACGTTGAATCTTAAGTCGCGGTCAT
GTCTCGCCCCCCCAGTATAGTGACCGATTCCATGTTTCCCCCGAATTTAATCAGTTCCAGGCTCT
CATTCCTCTCCCAGCAAGAAAACGGATGCGCGTTAGCTATAGGCTTTCGCTAACGCGCGCCCCTA
TCTCGTCAGCCGTTGCTTGTTTGGTCGAGCGTCTTCAACCCTCGA
Right flanking sequence: Indices 86006 -- 86505
CACTTCGTTCCTGACTTGTACAAGTCAGTGAGAAATCCCTCTGCTCATCCATCTTCATTCCAAAG
GCGAACATTTCCATTGAGTGACTGTAACTGCTATGGTTTACAGTCAATAGTTCTTAACCAACCCT
TTCTCGCCGAGCTTTAGAAAGCTTTAAGAGAGAAGAGTAAGGGGGACCTTTTCTCCTGCGGAGCC
CTTCAGAAAGTCACCGGCGGCCGGTAGCTCTACTAAGCGAAGAACCGCTCGCTGCCTTTTCTTCG
CGAATAACATGTGCAGGTAGCCGCCTAGGAGAAGAGAAGCAAGCTACCTTCGCCTACCTCCCATC
TATATCTATAGGCGGCAATGGTAAGAGCTGGTAAGCATGGTAACTGTATCGGCGGCCGGGGCCGG
CGCTCCGCGTTCTATCTAGGTTCCGCTCTTACGTACGCCCCACCTCACATAGAAGAAGGGGAACC
CCTTCCATAGAAGAACCCGTGTGGGTGGGAGGGGATTGAATCATT
Found at i:112448 original size:13 final size:13
Alignment explanation
Indices: 112403--112440 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
112393 CTGCATCTCT
112403 CGTATGGACGTAC
1 CGTATGGACGTAC
*
112416 CGTATGGAGGTAC
1 CGTATGGACGTAC
112429 CGTATGGACGTA
1 CGTATGGACGTA
112441 TGGTATGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (13 bp):
CGTATGGACGTAC
Left flanking sequence: Indices 111903 -- 112402
GATGTTTTTCCTAATGGCGCTATCAGTAGAATTAGAATTAGAAGAGAAGAACCTGATGTTGGACC
TATGGAATTGTGTATTTAGAACAGTGGATGTCTTTCTTATTAACTGACTCATGGGATTGTATATT
ATCTTAATTGAGAAAGTCTTAGTATTATAAATAGACATTTTAGGCATGTCTGGCCTTTTCATTAA
GTTTCTCATGATTAATATTTATCTAGTCAAATAAAAAAATTTTTTATGTCCTTCTGTGTGTAGAA
CATTGTCGCCAATGGGTGCACCTGACTGTTCCCAGTTCAGTTTTCTAACAGAAGTCACCAGCTTT
CATTGGTGGGGAGCTGACTGAGGTCTCCCTAGTTGACTGCTATGGTCAACCTGTCACGACCGTTG
TGGGTCAAATAGATGAATTTAGGACTATACCCTATCTCATATTTGTTTCTTATCCAGGACTGGAC
AAGACACCCGTATTTAGGTATCGGCCGTACCTACCCTGCATCTCT
Right flanking sequence: Indices 112441 -- 112940
TGGTATGGTGGGTAGCGGTAGTACCTTAAAGTACGTATTTAGTTCATTTATCTTCTAACTCATTT
AGCATAGTAGAATAAATGTTTTTTAGAATATGAACCCCACGAGTAAAGTCATGGAGAGTTTATAT
ATTCTAAAGAGCTCTTTAATGGATCGATTACAGGCTCATAATGGTTGTGGTCATTAATGGCTCGA
TACTAGTCATTGAGAGCTGATATTTATTCTAGAAGCATGGATGAGTGTTGAAGATGAAGTATTTT
TATGTAAGCAAAGTAAGATGACAGTCTTTTTATGTATTTATCTATAAGAGTGTGGGTATAGTGGG
TAAGCGGGCGACTGTTAGAGTTCAAGTGAATGGTCGTTGTTGTGTGGCTTCGACTCCCCAAATAT
GTAAAAAATTTCGTATTATAGAATAAAAGATTTGGGCTGGCCAGAATCTATCAAAGAAGCCGCCC
TTGACTATACGGAGGGAGGATAAGGAATTAGGCAGCTTAGGGACG
Found at i:151856 original size:24 final size:25
Alignment explanation
Indices: 151804--151856 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
151794 GGTTCCACAG
* *
151804 TTTCTTTCTCCGCAGCCATCTTTGC
1 TTTCTTGCTCAGCAGCCATCTTTGC
151829 -TTCTTGCTCAGCAGCC-TCCTTT-C
1 TTTCTTGCTCAGCAGCCAT-CTTTGC
151852 TTTCT
1 TTTCT
151857 GCGGCCTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.08, C:0.36, G:0.11, T:0.45
Consensus pattern (25 bp):
TTTCTTGCTCAGCAGCCATCTTTGC
Left flanking sequence: Indices 151304 -- 151803
CTTAGGTCTCCGACCGCTGCTGCTTCTGCTACGGCGGAGGAGAAGTTCTAGCCGCTTACCCCCTT
TGCCCATCTTCCTGCTCTGCCAGTATACTTCCTTGCAACCCATCCGTCCCATCCAATTCGGTTAG
TCTTCGTAAGAACAAACCGTATGGCTTTTGTAATCATGCTATTGTAATGGGCAAGTTCCCTATCT
TCATTGCTCAGGGCGAAACTCTGCTTTCAAAATCTCCTCGGTCTCTACGATTGCTTGACTTAAAC
AAGTGACTTCACTCTCTTTTCTTTCATCTTTGAGATAATTTATCTAATTTACTCTCGGATCTAAC
TCTCCTTCTTTCGGGCCGAGCCCGTGGGAAGATACATTAGTCATTGATATCCATATTACCATTAC
CTCTAATACCATGGCCGGAGTGCTGATTGCTATTGGCTTCGGCTGGATGTGTTCATCGCCACTGG
CATCATGCACATGGATGGTTTGCTCCTGAGCAACTGGTTCCACAG
Right flanking sequence: Indices 151857 -- 152356
GCGGCCTTACTCGCCTTTCTCTCGGCTAAAGCTAGCTCTGTGATCCGCTTTCTTTGTTCACAAGC
TCTACGTTCTCCTCTCTCTGTTTAGGGTCAGCTCTCTTCTTTCGACATAACCATAGTCAGAACAT
TGTATTGGAGCATACCTGTTTGCCAGGCAGGTAATATACCTGTGTAAGAAGTCAGGTCCTCTATT
CACTGCACTTTATCTCAAGCAGTGTGGTGTGTGCTTGCAAAAGGCATATGCCGGGGACTACTCTT
CACCGAGTTTATTACCAGTGCCCGTCTCTCTGACGAAGACGGGGTATCCTCGTATCATTCCTATT
GACACAGAAAAAAAATAAAAAGGATACTGGTGATTCATGTTCAAGAGAGCAGCTTTCTCGAGAAA
TAATGTCATTATACATTGATTTCTTTGACTTCTATTATCCTTCATTGAGACCTAAACGGGTCTAT
GAAATCAAAAAGGATGTATTAGAAGGCTTTGTCGCCGCTAAAGCT
Found at i:169222 original size:58 final size:58
Alignment explanation
Indices: 169132--169255 Score: 248
Period size: 58 Copynumber: 2.1 Consensus size: 58
169122 CTGTCCCGTT
169132 GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
1 GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
169190 GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
1 GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
169248 GGTCGAGC
1 GGTCGAGC
169256 ACTTCGTTCC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.14, C:0.39, G:0.21, T:0.27
Consensus pattern (58 bp):
GGTCGAGCGTCTTCAACCCTCGACCTTTCGGCCGAGTTCTTACGAACCTCTCCCTTCC
Left flanking sequence: Indices 168632 -- 169131
CTCATACCGAAAATCATACACGTGGGTGTACTGTCGACTATTGATTCAATTCCCGAAAACCTGAC
ACCAGCAAGGGAAAGATAGTTGGCTAGGGTTTTTCCCTCTCTCTCTCGCTATTTGCAGTTCAGTT
CTTACTTTCCTTTGGTCAATCGGAGTGAAGTGACTTTGATTTCCTACTTTCTTAGTCTTCTACTT
CCTTTCCCTACTCTTTGTAAGTCTGTTTGCCAATGCGTGAACTTACTTCTTTTATTTCTGGGCAA
AACCATGCTAAGATCGCTTATTCCGCACTTATTATATTATATACCAATTCAAATCTTGCATGCCC
TATTATATTATTATTATAAAACACTAACTGAATGAAATAAGGACTTTTCTAACAAAACTAATTGT
GCCACATCTTCTGAAAGACTCCTTGGGAACAGCTGACCAAAAGCAACCTTTCTCCTGGTGTGAGC
TTAAAAAAGAATGGAATCCGGATGCGCGTTCGTTCCTGTCCCGTT
Right flanking sequence: Indices 169256 -- 169755
ACTTCGTTCCTTAGCACAAGCACTAAGTAAGCCCTAAAGGCGGAAGGGGCCCTTGCTTTGGTGTG
GGGCACCTGATTGCCGCCATAATCCCGAAGCCTAACAAGATGAAACCCGCTCGACTCGTACTTCT
TTAATTGAATTGAAAGGGAAGCACTAGGGGAACGTCTTTCAATGACTTAGTTCTTCCCTAAGTGG
TTCGCTGACCAGCTGTGAAACGACTGTAGCATAAACTGGCAACCCTGGACAATGGTCCTGAGGGT
CCATGGAGGAGTTGCCTTCTGGAGGAGTATCTGGATTGTAATCTTAGAGTCTTCCTCGATGTGCA
CCTGCCTCACTTTGAATAAAAAACAGATTAAAATCCCGGGCCAAAACCTCTGCTCGGTTGTTGGT
AGACTGGGTGGATTGGGATCGAATAGCAAGTACCCGGAACCGGCCATCATAGTCTATAAGAATAA
GACCTCTGGCCCCCGCAGGTCCCAGATTTTGAGAGGCAGAGCCAT
Found at i:169245 original size:29 final size:29
Alignment explanation
Indices: 169155--169254 Score: 107
Period size: 29 Copynumber: 3.4 Consensus size: 29
169145 CAACCCTCGA
*
169155 CCTTTCGGCCGAGTTCTTACGAACCTCTC
1 CCTTCCGGCCGAGTTCTTACGAACCTCTC
* *
169184 CCTTCCGGTCGAGCGTCTT-C-AACC-CTC
1 CCTTCCGGCCGAG-TTCTTACGAACCTCTC
*
169211 GACCTTTCGGCCGAGTTCTTACGAACCTCTC
1 --CCTTCCGGCCGAGTTCTTACGAACCTCTC
*
169242 CCTTCCGGTCGAG
1 CCTTCCGGCCGAG
169255 CACTTCGTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
27 3 0.05
28 8 0.14
29 35 0.61
30 8 0.14
31 3 0.05
ACGTcount: A:0.13, C:0.39, G:0.20, T:0.28
Consensus pattern (29 bp):
CCTTCCGGCCGAGTTCTTACGAACCTCTC
Left flanking sequence: Indices 168655 -- 169154
GGGTGTACTGTCGACTATTGATTCAATTCCCGAAAACCTGACACCAGCAAGGGAAAGATAGTTGG
CTAGGGTTTTTCCCTCTCTCTCTCGCTATTTGCAGTTCAGTTCTTACTTTCCTTTGGTCAATCGG
AGTGAAGTGACTTTGATTTCCTACTTTCTTAGTCTTCTACTTCCTTTCCCTACTCTTTGTAAGTC
TGTTTGCCAATGCGTGAACTTACTTCTTTTATTTCTGGGCAAAACCATGCTAAGATCGCTTATTC
CGCACTTATTATATTATATACCAATTCAAATCTTGCATGCCCTATTATATTATTATTATAAAACA
CTAACTGAATGAAATAAGGACTTTTCTAACAAAACTAATTGTGCCACATCTTCTGAAAGACTCCT
TGGGAACAGCTGACCAAAAGCAACCTTTCTCCTGGTGTGAGCTTAAAAAAGAATGGAATCCGGAT
GCGCGTTCGTTCCTGTCCCGTTGGTCGAGCGTCTTCAACCCTCGA
Right flanking sequence: Indices 169255 -- 169754
CACTTCGTTCCTTAGCACAAGCACTAAGTAAGCCCTAAAGGCGGAAGGGGCCCTTGCTTTGGTGT
GGGGCACCTGATTGCCGCCATAATCCCGAAGCCTAACAAGATGAAACCCGCTCGACTCGTACTTC
TTTAATTGAATTGAAAGGGAAGCACTAGGGGAACGTCTTTCAATGACTTAGTTCTTCCCTAAGTG
GTTCGCTGACCAGCTGTGAAACGACTGTAGCATAAACTGGCAACCCTGGACAATGGTCCTGAGGG
TCCATGGAGGAGTTGCCTTCTGGAGGAGTATCTGGATTGTAATCTTAGAGTCTTCCTCGATGTGC
ACCTGCCTCACTTTGAATAAAAAACAGATTAAAATCCCGGGCCAAAACCTCTGCTCGGTTGTTGG
TAGACTGGGTGGATTGGGATCGAATAGCAAGTACCCGGAACCGGCCATCATAGTCTATAAGAATA
AGACCTCTGGCCCCCGCAGGTCCCAGATTTTGAGAGGCAGAGCCA
Found at i:180990 original size:29 final size:29
Alignment explanation
Indices: 180958--181048 Score: 105
Period size: 29 Copynumber: 3.1 Consensus size: 29
180948 CCGGAAGGGA
180958 GAGGTTCGTAAGAACTCGGCCGAAAGGTC
1 GAGGTTCGTAAGAACTCGGCCGAAAGGTC
* * * **
180987 GAGGGTT-G-AAGACGCTCGACCGGAAGGGA
1 GA-GGTTCGTAAGA-ACTCGGCCGAAAGGTC
181016 GAGGTTCGTAAGAACTCGGCCGAAAGGTC
1 GAGGTTCGTAAGAACTCGGCCGAAAGGTC
181045 GAGG
1 GAGG
181049 GTTGAAGACG
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
28 8 0.17
29 32 0.67
30 8 0.17
ACGTcount: A:0.27, C:0.19, G:0.40, T:0.14
Consensus pattern (29 bp):
GAGGTTCGTAAGAACTCGGCCGAAAGGTC
Left flanking sequence: Indices 180458 -- 180957
TTAAGCCACTCAGCCATACCCCCAAGTTGTTGATCGGAATTTGATGTGCGGTTGGTTGCCCGAAG
GGCTATCTGATCCGATCAACTGCGTAAGCCGTAGCGCGCTAGCGCGCGTACTCTTCCTCTATCTA
TGAGCGAGACTCCATCAAAATCTGCCACTCGTTGGGCGACGCCCTCTTTTCTATGAACACCCCAC
CACTGAATGATGAACTTTGCCAGTCTTCGCCTCCGACCCGACCAGGAGAGAACACAGAGTCAAGC
CAAGCCCTTACCCGCCTGAATTGAATTCATATCTCCTTCGTCTGGTCGAGAAGGGAGAAAGCCCG
GGGAACTGGACTGTGACTCTTCTATTACATTACGGAGAAGTCCATTTTCGTCATGATCGATCCAC
GTCCTACCGTAGTGCCCGGAGAACCAGGCTTGCTTAGCTTACTAACGCGAAGGCCTTTAGGGGCT
TACTTAGTGCTTGTGCTAAGGAACGAAGTGCTCGACCGGAAGGGA
Right flanking sequence: Indices 181049 -- 181548
GTTGAAGACGCTCGACCAAACAAGCAACGGCTGACGAGATAGGGGCGCGCGTTAGCGAAAGCCCC
CTACTATAGTATAGATAGGCTAACGCGCATCCGTTTTCTTGCTGGGAGAGGACTGAAAGGGCTCT
TTTCGTATTATGAAAAGGAATTCTTAGTTGATTGCACGAGCTAGCCAGTCAATCCAGCCGTTTTC
TTGCTTGGTGCGCTAGTGCGCCTGACTTATAAGTAGCCGTTTTCTTCGCTGGGTTAGATTCCCGA
TCCACTCATCTTCAAACAGGGGTTCATCATCCAGAAAGATGCACCGCACTCCAGACCAAACAATA
CCTGCCAGAGATTGAGCTCGACTCGAGAGATGGAGACATAAAGGTGCGATAAAGTCCTCGGTGGG
TGAGTCTCTCGATATTGAGTCGACCCCGCTCCGAGCAAGCATCGAAGGAATTAATCCAATGCAGG
TCCGGGTAGGAATCAAGGAATTGAACCCAGATAAAGCCTGTTACC
Found at i:181032 original size:58 final size:58
Alignment explanation
Indices: 180942--181065 Score: 248
Period size: 58 Copynumber: 2.1 Consensus size: 58
180932 GGAACGAAGT
180942 GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
1 GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
181000 GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
1 GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
181058 GCTCGACC
1 GCTCGACC
181066 AAACAAGCAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.27, C:0.21, G:0.39, T:0.14
Consensus pattern (58 bp):
GCTCGACCGGAAGGGAGAGGTTCGTAAGAACTCGGCCGAAAGGTCGAGGGTTGAAGAC
Left flanking sequence: Indices 180442 -- 180941
TTAGCAAACCAATGCCTTAAGCCACTCAGCCATACCCCCAAGTTGTTGATCGGAATTTGATGTGC
GGTTGGTTGCCCGAAGGGCTATCTGATCCGATCAACTGCGTAAGCCGTAGCGCGCTAGCGCGCGT
ACTCTTCCTCTATCTATGAGCGAGACTCCATCAAAATCTGCCACTCGTTGGGCGACGCCCTCTTT
TCTATGAACACCCCACCACTGAATGATGAACTTTGCCAGTCTTCGCCTCCGACCCGACCAGGAGA
GAACACAGAGTCAAGCCAAGCCCTTACCCGCCTGAATTGAATTCATATCTCCTTCGTCTGGTCGA
GAAGGGAGAAAGCCCGGGGAACTGGACTGTGACTCTTCTATTACATTACGGAGAAGTCCATTTTC
GTCATGATCGATCCACGTCCTACCGTAGTGCCCGGAGAACCAGGCTTGCTTAGCTTACTAACGCG
AAGGCCTTTAGGGGCTTACTTAGTGCTTGTGCTAAGGAACGAAGT
Right flanking sequence: Indices 181066 -- 181565
AAACAAGCAACGGCTGACGAGATAGGGGCGCGCGTTAGCGAAAGCCCCCTACTATAGTATAGATA
GGCTAACGCGCATCCGTTTTCTTGCTGGGAGAGGACTGAAAGGGCTCTTTTCGTATTATGAAAAG
GAATTCTTAGTTGATTGCACGAGCTAGCCAGTCAATCCAGCCGTTTTCTTGCTTGGTGCGCTAGT
GCGCCTGACTTATAAGTAGCCGTTTTCTTCGCTGGGTTAGATTCCCGATCCACTCATCTTCAAAC
AGGGGTTCATCATCCAGAAAGATGCACCGCACTCCAGACCAAACAATACCTGCCAGAGATTGAGC
TCGACTCGAGAGATGGAGACATAAAGGTGCGATAAAGTCCTCGGTGGGTGAGTCTCTCGATATTG
AGTCGACCCCGCTCCGAGCAAGCATCGAAGGAATTAATCCAATGCAGGTCCGGGTAGGAATCAAG
GAATTGAACCCAGATAAAGCCTGTTACCTGTTGCCGATCCGATTA
Found at i:181062 original size:29 final size:29
Alignment explanation
Indices: 180972--181062 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 29
180962 TTCGTAAGAA
180972 CTCGGCCGAAAGGTCGAGGGTTGAAGACG
1 CTCGGCCGAAAGGTCGAGGGTTGAAGACG
* * *
181001 CTCGACCGGAAGG--GAGAGGTTCGTAAGA-A
1 CTCGGCCGAAAGGTCGAG-GGTT-G-AAGACG
181030 CTCGGCCGAAAGGTCGAGGGTTGAAGACG
1 CTCGGCCGAAAGGTCGAGGGTTGAAGACG
181059 CTCG
1 CTCG
181063 ACCAAACAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
27 3 0.06
28 8 0.16
29 28 0.56
30 8 0.16
31 3 0.06
ACGTcount: A:0.25, C:0.21, G:0.40, T:0.14
Consensus pattern (29 bp):
CTCGGCCGAAAGGTCGAGGGTTGAAGACG
Left flanking sequence: Indices 180472 -- 180971
CATACCCCCAAGTTGTTGATCGGAATTTGATGTGCGGTTGGTTGCCCGAAGGGCTATCTGATCCG
ATCAACTGCGTAAGCCGTAGCGCGCTAGCGCGCGTACTCTTCCTCTATCTATGAGCGAGACTCCA
TCAAAATCTGCCACTCGTTGGGCGACGCCCTCTTTTCTATGAACACCCCACCACTGAATGATGAA
CTTTGCCAGTCTTCGCCTCCGACCCGACCAGGAGAGAACACAGAGTCAAGCCAAGCCCTTACCCG
CCTGAATTGAATTCATATCTCCTTCGTCTGGTCGAGAAGGGAGAAAGCCCGGGGAACTGGACTGT
GACTCTTCTATTACATTACGGAGAAGTCCATTTTCGTCATGATCGATCCACGTCCTACCGTAGTG
CCCGGAGAACCAGGCTTGCTTAGCTTACTAACGCGAAGGCCTTTAGGGGCTTACTTAGTGCTTGT
GCTAAGGAACGAAGTGCTCGACCGGAAGGGAGAGGTTCGTAAGAA
Right flanking sequence: Indices 181063 -- 181562
ACCAAACAAGCAACGGCTGACGAGATAGGGGCGCGCGTTAGCGAAAGCCCCCTACTATAGTATAG
ATAGGCTAACGCGCATCCGTTTTCTTGCTGGGAGAGGACTGAAAGGGCTCTTTTCGTATTATGAA
AAGGAATTCTTAGTTGATTGCACGAGCTAGCCAGTCAATCCAGCCGTTTTCTTGCTTGGTGCGCT
AGTGCGCCTGACTTATAAGTAGCCGTTTTCTTCGCTGGGTTAGATTCCCGATCCACTCATCTTCA
AACAGGGGTTCATCATCCAGAAAGATGCACCGCACTCCAGACCAAACAATACCTGCCAGAGATTG
AGCTCGACTCGAGAGATGGAGACATAAAGGTGCGATAAAGTCCTCGGTGGGTGAGTCTCTCGATA
TTGAGTCGACCCCGCTCCGAGCAAGCATCGAAGGAATTAATCCAATGCAGGTCCGGGTAGGAATC
AAGGAATTGAACCCAGATAAAGCCTGTTACCTGTTGCCGATCCGA
Found at i:195734 original size:28 final size:28
Alignment explanation
Indices: 195703--195775 Score: 65
Period size: 29 Copynumber: 2.6 Consensus size: 28
195693 CCTTATCAGT
*
195703 CGAGCACTTCGTTCCTCGACCTTTCGGC
1 CGAGCACTTCGTTCCTCGACCTTCCGGC
** ** ** *
195731 CGAGTTCTTACGAACCTCTCCCTTCCGGT
1 CGAGCACTT-CGTTCCTCGACCTTCCGGC
195760 CGAGCACTTCGTTCCT
1 CGAGCACTTCGTTCCT
195776 TACTCTAACA
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
28 12 0.38
29 20 0.62
ACGTcount: A:0.12, C:0.38, G:0.19, T:0.30
Consensus pattern (28 bp):
CGAGCACTTCGTTCCTCGACCTTCCGGC
Left flanking sequence: Indices 195203 -- 195702
CAATAGGAAGAGGAGTTAGCTAGGAATTAATTTATTGACAAAGTTCATGCCACGACGATCTATAT
GGAAGGGCAGTTTTGTTGATGCATTCCTGTTGAAAAATGTTTTTTTTTAATTAATTCTCCAACTC
CGGATGAGTTTGAGGCCTCCGGCGCCTTTTTTGAAGACTTTTTTTTTGCGGGAAAAAAACCTTTT
TTTGGTGCCCCTCCAAGATCCCCGGTAAACTCGGGCTCGGGGGGCCTTTGCCTTCATTTCTGGAA
GAACACGAGGTCACCTCTTCTCTTCATCAATAGAAAGGAACGCAAGAAAAAATGTTGTGAACTCC
CCCAAGAAAAAATAGCGGTAAGTGATGAGGGGGCGGCTTTTTTCTTGTGGTAGTAATTGCGAACT
CATTCAATTTTTGGAGGATTCGTTCCCTGTTCCTGCGGCTGAGAAGCCTCAAGCTCCGCCCCCCT
TACTCTAACTCTATAAAAAAAGCCCTAAACCCTCTCCTTATCAGT
Right flanking sequence: Indices 195776 -- 196275
TACTCTAACAAGTAAGCAAGCTTCACCCCAGCAAGAAAACGGATGCGCGAAAGCCCCCTACTATA
GTTTTTAAGGCTTTCGCTAACGCGCGCCCCTATCTCGTCAGCCGTTGCTTGTTTATAAAGTAGTA
CTAAATCAAAGACATGAATTGCCCGAAGGCCAGGTTATTTATTCCCATAGGCACAAAGACCGATC
CCGACCGTCCCTTATATACACGTTTACGCCTGGAAATGATGCTTGAATTCTTGCTTGTCTTCTGA
GCCATTGACTTATGGAAGACATGGGGCACGAACGATAGCATGGTTAATTAAGTAGGCTATGGAGC
ATGAGCCATATCAGTGCTAGAAAGACTTCTTTTTTCGATATGGTTTGATAGTAGGAGAGAAGTAG
TACCCCTATGGAGTATGGCCCAACCAGCGGAGTACTTTACTAAAATATCTGTCCGACCATCCCAG
ACCCTTTGTGGTTAGACCCCTTTCTATCCACAACTGAGAAATATC
Found at i:245542 original size:30 final size:30
Alignment explanation
Indices: 245506--245565 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
245496 TGTTATTTTC
* *
245506 ACTGGAAATCCTCCTATGGTATCTCGTCTG
1 ACTGGAAATCCTCCGATGGGATCTCGTCTG
*
245536 ACTGGAAATCTTCCGATGGGATCTCGTCTG
1 ACTGGAAATCCTCCGATGGGATCTCGTCTG
245566 TTGGGCCATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (30 bp):
ACTGGAAATCCTCCGATGGGATCTCGTCTG
Left flanking sequence: Indices 245006 -- 245505
GTGCCATATGCGCCTTATTTTGGCTTTTTCTCCTTTTTTCTTCCCGCTTTAATATTTGTTCTCGA
AAGTCTTCGTTTCCGTGTAGAAGCAAACTCTCCAAATTTATGACCAAATTTTCCTGTTCACGAAT
CAGAGATCCGCTCTAAGAGCTTTACTAGCAGAAAGAGGCCCCCCAAAAAAAGAGTTAGATGCAGT
GCACTTACTCTTTCTTCCGGAGTTGGGGTTGGGGCCCCTTCCCACCAAGACACAGCACTGCGTAC
GATCTCACGGATGACGCCAAAGGTGCTGAGGAAAAAGGGCGTCATCGTCTCATCGATATATGGAT
CGATATATGGTTTTATCTTGCCAAAAAGCAAACCTATTATCTGAAAGATAACGGCTGCTAGGGCG
CTTCGTTTAATCACGAACCAAGTTGACCAGGTCGTCGACCAGGGCCTGGAATTGGTCTTATAGTG
GCTGCGCCAATTCTGGCCTCGCCTAGGATTATTTTTGTTATTTTC
Right flanking sequence: Indices 245566 -- 246065
TTGGGCCATGCTGTGGATTTGCTCCTGCGAGTAACAGCCAAATGCCTGAAAGTCTCGCGAAGCAA
AGTACGTGCATATGGGGCCCCAGCCTTTAAAAAACGTTATTTCACAGATACAGAAATGGAATAGA
TCTTGGACCTTTTTCGCCAAGACCGTGCTCTTGGCAGAATTAAAAATTAAGAGTCCAAAAACAAG
GTAAGAACTCCCACTTCTTTGTGCCTCCGACGACACCAAGATGGAGCGACAGTCAAATGTCGCAG
AAAGCCGCTCCCTGATTTCAGTCGGATCAAGATCTTCGTTATGTTTAAAAAAAAGGAGTATTCGT
TTTGGTTTCATCGTCGACTGAAAGGTGCTTAAAGGAGAAATTCAAATGTTATAAAGCTCCGCTCC
GATTCCTCTACCGACCAACGATTCCCCGAGCCGTTTCCCGTTTTCCGCTAAAAAAAATATAGAAA
AATATCGGAAATTACTTGTCGGGTTAGCCTCTGAGCTCGCCAATA
Found at i:261502 original size:22 final size:22
Alignment explanation
Indices: 261474--261515 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
261464 GCTTCGCTTC
*
261474 TTTAACGCATCTTTAAGGCTGA
1 TTTAACGCATCTTGAAGGCTGA
*
261496 TTTAACGCTTCTTGAAGGCT
1 TTTAACGCATCTTGAAGGCT
261516 TCTTTCTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (22 bp):
TTTAACGCATCTTGAAGGCTGA
Left flanking sequence: Indices 260974 -- 261473
GGGAGAGAGGAAGAAGAGGCACCCACTAGAGAAGCAGCAAATGATATGGCTCGTTCGTATAGGCA
GATAAAAAGTGAATGCCTATGTGCCAAATAGCGTGACTCAAGATAGAATTGCAGCTTGTCAATCA
AGGTCCGGATCGAATCGCATTGAGAAGGATTTGGAGTAGGATAACTAGGTTGAATGCATTGGACT
GAAAGCTGACAGCAAGCATTCCTTTATGATAACAGACTAAGGACAGACGGGAGGAATGGGATAAC
TAACTACGACGGCTGGACCATAGAAGACTGGAAGGAAGATACTTGGAAGGCTTACAAGCCTAGAT
GGACAACAGCTTAAGCGATACGGATATGGTGATAGACCGGCGAACACATGAACTACCTCTAATTC
ACCTACCACCTATTCATCCCTTTACTCAAAACTAAAGAATGATTGGGTAGATCGACATAAGAGAG
GGTGTCAAATATACCTCTGTCAAACGTCCCCTTGGGCTTCGCTTC
Right flanking sequence: Indices 261516 -- 262015
TCTTTCTGGTGTCGGTACCCTGGACCATAAGTAGAATGAATGTTCTACTTAAACCAGCTATGACA
GGTTTTCGGTAACCTTAGCCGAACTCGGGTGACTGAAGGATATTATGATTCAAGCTCTGAAGCGA
ATTCTTTTCTCTATTGTACCCTCATCGACATCTCCTTACGCTGATTCAATAGCAGCTGGGTCGTG
AACAAGAGCTGAAAGACGTGAAAGCTCAAAGCTACTGGTTCTGTCATACTCGATTCTATTTCTTT
CGACTTGAAAGTTACTGCCTTTTAATTTGAACTTCTCATTTCTTACGCTAGCAAAGCAGGCTTGC
TTTAAACCATACCTGCTATCAAACGGGAGTGAAGAAGTGTCTTGCTCTTGTTGACTTACTACTTA
AGGGATAAGGCCTTTTTCTTAGAGGGCGTAGGAAAGAAAAAGAAACTACAACTCAAACCCCTCCA
AAAAAGAAATATTCCTAGTAGCTTTAGTTGTCAGGTTATAGTTAC
Found at i:338420 original size:36 final size:36
Alignment explanation
Indices: 338373--338444 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
338363 TCTTCGCTTT
338373 GAAAGAGACCGACTATAGATCTCTTTCTCTTACGCA
1 GAAAGAGACCGACTATAGATCTCTTTCTCTTACGCA
*
338409 GAAAGAGACCGACTATGGATCTCTTTCTCTTACGCA
1 GAAAGAGACCGACTATAGATCTCTTTCTCTTACGCA
338445 ATTTTTTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (36 bp):
GAAAGAGACCGACTATAGATCTCTTTCTCTTACGCA
Left flanking sequence: Indices 337873 -- 338372
AGTTTTACCCAAATAAGACTCCAATCCAAGCCAAAGAAATCGCAAAAGGTGAATATGATCCCAAG
TAATAAGACAACTGTCGAGATTCTGACCAAAAAATTAGAAAAAATCGAAATCGGATTTCCCATAT
GCGCCTTATTTTGACTTTTTCTCCTTTTTTCTTCCCGCTTTAATATTTGTTCTCGAAAGTCTTCG
TTTCCGTGTAGAAGCAAACTCTCCAAATTTATGACCAACTTTTCCTTCAGTGATCTTACAACGAA
CAGGAGTTTTTCCATTGTAAATTCGTACGGAGCAATTAACGAATTCCGGCAAAATAGAAGATCTG
TCTTCTTCTTCATTCTCAACAGGAATGCATCAACAAAACTGCCCTTCCATATAGATCGTCGTGGC
ATGAACTCAGAATTTCTTCGCTTCGATTCCGCCCCTACTTCTATTAGAGCTAGCTTCTCCTCCTC
CTCCTTCTCCTCCTTCATCGTCGTTGGTCCTTTGTTCTTCGCTTT
Right flanking sequence: Indices 338445 -- 338944
ATTTTTTTAATTTAAGCCAAACGAAGAGTGACCACTTCCTGCTCGTACTTCCTATTCCTCTCTAG
TTAGTGTACTCTCGCTACTCGTTAGCGCACTCGTGACACAGTACTCGCGCAACAGCGCTTGCCGC
AGCTCGTAGCTCTGTTATTCGGAGTAACGGGATCTTGATTGCACGAGCTAGCCGATTCGGATTCT
GCTTTTGAGAAGAATGAATCTCAAGTTTCATCCGGTAGGGGGCGTAGGAACGGATAGCGCTCTTA
GTTAGCTTAGGAGCGGAGGTACGAGACAAAAAGGGGAGTTTCCCTCGACTAAGCAGTTTCCACTA
GACCTTTGGCTAATAGTTTAGTTGTTCCCAGAGGAATTCAATCTGGGCAGCTAGAAAAGGAGAGG
GGCGAAGCCTAACTCCTATGCCCGGGGATGTTCTCAATCTAGAAGGCGAGCTACAGATGGGTTTA
CCACCTCAAAAGAATCTGGTGCAGGAGAGGGGGCATTGGCGAGGC
Found at i:349687 original size:15 final size:15
Alignment explanation
Indices: 349667--349698 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
349657 CGGGCTTTCA
349667 TAAATCAGTATCTCT
1 TAAATCAGTATCTCT
*
349682 TAAATCAGTATTTCT
1 TAAATCAGTATCTCT
349697 TA
1 TA
349699 TGAATAGTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (15 bp):
TAAATCAGTATCTCT
Left flanking sequence: Indices 349167 -- 349666
CTTTGCCATCTGCTTTTTTGGCTTCTTGACGGCCCGTGCCTCTCCGCTTTTTGAGTCTTCTCGGA
CGTGACAGATCCAAGATGAAATCTGATCGGGGCTTTCTCCTTTTCTTTCATGATTGAGCCGATAA
GAGCAGAGAATGAGAAAGTCAACCGAATTAAAATAAAAAGGAATTTCCTTTGAAATTCTGTCGAA
GCCGATAGGGATAGGAAGGTGCAATGCGGACCTTTTATAAGTTCAAAGGTAAGAATATTAAGAAG
TCATGTGACCATGCAGGCGGGCCTGGACTCTTTTCTTTCTCCTCCGGCGAATGATTTCACTTTTC
TGGCCCTCAACCAAAGACTAAAAACTCACCCAAGCCTTTGGGTAAGGCTAAGTAGGGTAGGAAAC
TCTTTCTTGCGGATTTCACAGTTCACGTGTCCCCGCATTTAAGTCTGAAACGGGTGCTAGCTTGA
AAACCGCCACAGTTAGCTGTCGGTTGAGGCCTCACCGGGCTTTCA
Right flanking sequence: Indices 349699 -- 350198
TGAATAGTAGGGCACTGAGGGAGAACTTATCGACGACAAAAAAGACGAGGTTTCTGTTGGAGGGT
CCCTGCCGCCCCGAGTCAAATGGAATTTAAAATACTTTTTTTATAAACAAGGTGGCATCTCGAAA
GTGCCGCTAGGCGGTTTAATCATGGAACGTCCAAAAAGCCTGGTAAAATGCGAACATTATTATTC
TAAAAAGATGCCCTAGAACATACATGTTATTGAATTGAGTGAGAGGTCCCTTTCTTTCCTACTAC
TGAACCCGGAAATTGCGTAGATTGCTTTGCTTGGAATTCCCTAAGTAACCCAATCCCTGTCATTT
CACACGGAAAATGGTATGTTTGAGCGTTTGAAGTGGACGAACAATCAGCGTACGTAATCGAGTTT
CATGCCATCATGTCTTTCTGCCCAGCAGCGCTGGAAACCGCTTTCATGCGTCTTGGTTGTTGGTA
GAGGCCTGAAAAGATTCTATTTGAAATAGTTTCAAAGGCTTGAAG
Found at i:354059 original size:28 final size:28
Alignment explanation
Indices: 354019--354090 Score: 126
Period size: 28 Copynumber: 2.6 Consensus size: 28
354009 GAAGTTTTAA
*
354019 ACTTGTTAGAGTAAGGTCTTTAGAACAG
1 ACTTGATAGAGTAAGGTCTTTAGAACAG
354047 ACTTGATAGAGTAAGGTCTTTAGAACAG
1 ACTTGATAGAGTAAGGTCTTTAGAACAG
*
354075 ACTTGCTAGAGTAAGG
1 ACTTGATAGAGTAAGG
354091 GATTTCTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (28 bp):
ACTTGATAGAGTAAGGTCTTTAGAACAG
Left flanking sequence: Indices 353519 -- 354018
ACCCAAGACAAGAGGTCAAGAGGCGGTGTCCGTATGTATGGTTACCACCTAAAGCGGATAGTTTT
TACAACCGTAAAATCGAGGTGGAAATCTCTAGACTTTCCCCCCAGGCGTAAAAACGGTTATTGAC
AAAACTTAACGATTAAGCTTTGCATGGGAAGCTGCCACCTGTCTATGGAGGCTTTGAGAACAACT
TCCTGATGGTTACGACTGTCTTCTCAAGGAAGCAAGCCAATCCACGTAGGTCTTGATCCGATGTG
GACTAAAAAGTCGATGTAGATATCCCACACAAATTAGCGTAGACCAAGTGTTAGCTCTGCATGGG
CAGGCTTAATACTTGGCTAACTTCATCTTACGTAGATCGAATGCCCATCTTGCATGGTTAAGGCT
CAACACTTAGTGAGCTCGAGTTAACAGCACCGTCAACTCATTATGAACACACGCAAGGTTTTTTT
TTAAACTTATAATTTTTTCATAATTAATGTCTACGGAAGTTTTAA
Right flanking sequence: Indices 354091 -- 354590
GATTTCTCACTTACTTGAAAGAGTCTCTAAGCCTTCCTGTATAGCCCTCTTTTTACTCACTTTCA
CAAGTGAGCCCTAACTGCCTCATGCTATAGCGGGCGAAGTCCCTTCCTTCTTCTTGCTTTATAGC
CTTCTATCCTTAGACCTTACTTAGGCTTCCTCCTTAGAATGAAGGAGAGGGTCGTGTTCTATTCC
TGGTTGGTTGTTCATATTGCCATTGTATAGCCCCCTTGAGTCCTCCGTGGGGATATCCCTAAATG
CCCATTGCTCATCAATCCTCTATCTTTCACTATCAGATCTCCATATCAAGCCAGCCCAGTCTATA
TATTCTGATATCTTACTATGAGATTGACTGCTGAGGGAAGAACTTCTATACGAGCGGTCTATGCC
AGTTCTTTTCTCTCTTTCTTGCCAGTCCTTCCGTAAGAGGGGGGCAAGTCACTTCTTTTCCTTCC
CCTGGGAAATTCCCAAGATCTGAACAAGGACTCGGAACTGTCTTT
Found at i:412207 original size:14 final size:14
Alignment explanation
Indices: 412188--412215 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
412178 GTGCCTGAGT
412188 CTTCTATAATATAA
1 CTTCTATAATATAA
412202 CTTCTATAATATAA
1 CTTCTATAATATAA
412216 TAAGTAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (14 bp):
CTTCTATAATATAA
Left flanking sequence: Indices 411688 -- 412187
ATCCGCTCATTCCCTATCAAACTTGTTATTTATTTATAATTGAACAAAAGCGAGTTTCAAGGCCG
CTTTACCGAGTTTACGAGGGCTCAGAAGCGGAGGTTCAGGAGCGTGGTAGCTCGACCCTCGGTAG
AGTGGTGAAGCTGTGAACGAATGGGTTAAGCGAAAAAGGGCGTTGATCCAGGATTCGATTCGAGG
CTTGACCACGACCGGACCTAGGCCGATTTACACTCATGATTGCCATTCATTCATGAACTGGCTTG
ACACGACACAGAAGAGCTAACAACCATATGGAAGGGGAGGAATCCAATCTCCTTCTTCCTGATCT
TATTGGCCCCTTACAGCGGGCCTAAGAGCAAGGAAGTCTTAACTCCCCAATCCCCCCTTTGAAGG
GTGAGGCGTGAACCCTCTGTCTGATTCAATCTCATCTATTGCTGCTTTCGAATCGGCTGAAAGAG
GATTTTGATGTCACTTAGGAGAAGTATAGGGAAGTGTGCCTGAGT
Right flanking sequence: Indices 412216 -- 412715
TAAGTAGTTGTGACTCGGTCTAGCTAGGACAGAGCCATCCTAATCCTAAAGAGACTTTCTTCTGT
TCTAGGTTTCCACAAAGGGGTATCAGGGTATGAGAACGCCTTTCTCCTATAATCAAGTCTTTGGT
TTAGATCAATCAATCCACCGGTTAATTTTCTGATTGATTAGAAAGACCAACCCCGGCCCTAGTGA
GAAGAAGATGGTTAGACGCCAATTGAAAGAGTGGTAGTTTTATCCATGATGACCGGGTGGCTCTC
TTTGCCCTTTCGATCTACTTCCTCTTCTAAAGGAAGATCTAGCTGTGGATGATGTCCCAGCTGGA
AAGTAAACCTTTTCATATTAATGCCTGCCCTATTGGAGATTCCAACTATATATGCATTTATGCAT
TTTCCTTTTATGCGACAGGTATGTGACCTTAGGAATTAGGTTCGGGAGTTGCTTTAGCAATTTAA
GCTGGCTCCAGGTGTCAGTAATAGAAAAAGATTGGATTGGGAAAG
Found at i:448079 original size:15 final size:16
Alignment explanation
Indices: 448061--448093 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
448051 GAGTCAGCCA
448061 AAAAG-AAAGACCACC
1 AAAAGTAAAGACCACC
*
448076 AAAAGTAACGACCACC
1 AAAAGTAAAGACCACC
448092 AA
1 AA
448094 GATACGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.58, C:0.27, G:0.12, T:0.03
Consensus pattern (16 bp):
AAAAGTAAAGACCACC
Left flanking sequence: Indices 447561 -- 448060
GGGGCTTAGGTCAACACTTATATAATAGCCAGTCATCAATTGGAAGCGGGCAAGATGGTGATGAA
TTGCAATTGGTCTAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGCCAATACATACT
AAGACCTTATTCACATCAGGAGGAGCGAAGCAGCTCGAGGAGGAGCTAGGGCGGACCCAAGAAGC
CCAAGAACGGGATAGGGCCCGAGCCGTAGAGCGACAAAGACTTTGGCAGGACATATATAGAATCC
GCCAAAGAAGTCAGGTTTTCCAAATCGAAAAGGAAAGACTCAGATTCAGAATTAATGAAATTCAA
TATCAGCAAGACCGACGAAGAAGATTCGGTCGTGGGTAGAAACTTTGCTTGGGCCTTTCGTTTTC
GATTCCCATTAGCCGGGTAGCCTTAAAATTCGCTTAGTAGCTTAACTCTTTCTACTGGCGTGGCG
CTGCTGGATGCTTCTGATCAATAGAACAGGAAAAGGAGTCAGCCA
Right flanking sequence: Indices 448094 -- 448593
GATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTGGAAAACCATTTTGGGGGGCTTCCGC
CTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCTTATATACTGTGTTACGATCACCTCAT
ATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAAAAC
AGAAACGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAAG
ACTTCTTGGTCAAGCCAAAAAGATTGCCGGCAGAATGCTCCTACCCCACCATGCCTGGCCCTTTA
CCTTACCTTAAGAAGAAATGGGGGGGTATGAAGCGTGGGAAAGAATGCAAGAAGTGTATGATACA
ACAGGTAACCTTAAGGAGTGGCGGCAAAGCTCTTGATTGATCAACGCGAGTGAACTGTGCTTAGA
CGCTTCGTAAAACCGCACCGATCTACGAGAGGAGCTGATGGATGA
Found at i:479690 original size:20 final size:19
Alignment explanation
Indices: 479654--479695 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
479644 GACGATCTGG
479654 CTAATTATATATACTTCTAT
1 CTAATTATATATACTTCT-T
479674 CTAATTATATACT-CTTCTT
1 CTAATTATATA-TACTTCTT
479693 CTA
1 CTA
479696 TTAGAAAGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 16 0.76
21 1 0.05
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (19 bp):
CTAATTATATATACTTCTT
Left flanking sequence: Indices 479154 -- 479653
AAATGGTTTGAGCTTGGAAGCAACCTACTATCTATCGATAGGCGAGAACAGACTGCTATTGGCTG
CTTTGCCTATCTATTCTATTATGGCCGGCTTGGAGACATCAGAGGAAGACCATCATTTCTATCCG
GGTACGATCATAGCTTCATTCATTCGTTGAACCCTGGGGATAACCATTAGCATTGAGGTCAATCA
CCACACCACCTCTATCATACATACGACATTACATGACGCGAGAGTGCATGGTCAACACACACCTA
AAGCGCCTACGTTCCGCTTGCAGCCAATACAACCACAACCTAACTTGCACGAGATTCAACAACCG
AAACTACTGGTAGTCCCGAGGGGACGGCATCCTCCTATAATAGTTTGCAGTACTGAACAAGCGAG
TCATCGGTCGGGGGAAAGAAAAGGACCGCCTTTAAAAAGAAAAAAAAGGAAACGCTTTCATTAAA
ACCTTCGGAACAAAGGTGATTCTGTTCATGCTTCAGACGATCTGG
Right flanking sequence: Indices 479696 -- 480195
TTAGAAAGGCGAACCTATAGGCCTGTTTTAGCGCGTTTCCAAAGGTAACCGGTTAGGTTGACTTT
GGAAACGCTACTAAGGACCGGGTGAAGAATGAAAAACGTCCGCTAACGCCCACGGGATAAGATCT
TTTTTAGATCAGCAACGAATTCTTGTATCTACGAAGAAAGATTTCTCCCGGGGTTCAGACCCTAA
ATGCCATACCTTGCTGAAGGCGATTCACGATAGAATCGCGCATAGTTCCGTTTGACCGAGATGTG
AATGCCCGTGATCTGTTCGGTATAGTGATGGATTTCATGGCCGACGTCTAACCGGCACGAATACG
CCGACATGAAACGAGTTCCCCGCGGAGCATTTTTTTTTCTTTCGTTCTCGGACGTTTTGTTCGAT
TCCGGCACTTGCGTTCTCATGCCTGGAACCCTCGCGATTGATTGGGAGAAAGAGCGAAAGCGAGA
AAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCCCGGGG
Found at i:492468 original size:39 final size:39
Alignment explanation
Indices: 492414--492489 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
492404 AAACACCAAG
492414 AGTTTCAGATTCTCCAGGATGTCATCAGTCCAGGATATA
1 AGTTTCAGATTCTCCAGGATGTCATCAGTCCAGGATATA
492453 AGTTTCAGATTCTCCAGGATGTCATCAGTCCAGGATA
1 AGTTTCAGATTCTCCAGGATGTCATCAGTCCAGGATA
492490 AGCGTTCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (39 bp):
AGTTTCAGATTCTCCAGGATGTCATCAGTCCAGGATATA
Left flanking sequence: Indices 491914 -- 492413
AAGACAGGCTTGGTCTTTGTATCCTTCCTCTTTAGGGAGTTCTTCCTATTAAGGATAAAGAGTTT
CGTGAGTAGCCAGAATGCGAATTACACGACAAAAAATCCTGTTGAAGGGCCTACAGAGGCCTTTG
ACGCTGCTTCAGGAGAACTTCTTTCATCCGCCCTAACGGGTCACCTCACTGGTTGCATTCCCGAC
ACCTGACTTTTAAAGGGGGCACTCGAGCTTTCACTGACCCAAAACCCTCGGATGTACCTAAACTA
GACTCAGTCCGAGCTCCTGCAAGAGGGTCCAAAGTAGAGTGGCATGGAATCGGCCGGAAAAGACA
GATCTGAGAATTGCGTATATTGAGTGAGATGCCGCTTCAAAGATGCTGCTTACCTAGGATGGTGT
GCTTTTCGCTCCTTTGGCTTTCTTTCTCCCGGAGACCATGCCATTCCTCGACACCGACCTTCAAA
CAAAGTCAGATGATTTCAGCATCGTTTCCATTCCAAAACACCAAG
Right flanking sequence: Indices 492490 -- 492989
AGCGTTCTTTATGATGTAAACCGTTCTCCCTCATTGTAACTTACCCCCCTGAAGCGGCCGATTCC
CTACACTAGCTTGGCTATCGCTTGTCGGTGAATCAAAGAGTCCTTTTTTGAGCCTTCCATCATTG
ATTTAGCTTTCATCAAAGCCTTGACTTTATTCCAAAAAAGCCAATCGGCAGAACAAGCAAGATTG
CATCCGTGAAAGACCACCAGCAGCGAGACTAGTGCCACATAGTAGCATTGATCCAGCAGTTGAGC
CCGAGTAGCCATTGATCTTGTCGATCGCATTAGTTAGTGGCGGAGGAAAAAGTAAGGATATTGGG
ATATACATAGCTATTTTACCGAATCGGGATAACAAGCTATAAAGGTAGCAAAGATCCACCCGGGT
TAGTATCTCCTCTCACATTCGTTCGAGTTACTAGCGTAACTCCTCGAAATGCATTCGTTCGACCT
TTCACAAAGAAGCACCCCGGTACGATTCATTCCCATGGTGCACCC
Found at i:496141 original size:18 final size:18
Alignment explanation
Indices: 496120--496162 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
496110 CAACCTTGTT
496120 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
496138 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
496156 GACTATG
1 GACTATG
496163 GCAGGGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 495620 -- 496119
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 496163 -- 496662
GCAGGGCTTTAGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGA
AGATTTAAAAGGCGAGCACTGAAATGAGAAATTTCATTCGTGACGCTGAACGACACATTCTAAAA
CTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCAT
GTTCGCCTGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAAAGTGTC
CCTTACCGGGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGA
CCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAG
GGGAAGAGGGCCCTCGGCCCGATCATCCAATTCACTCCAACAGACAGGCATGGTTCTGTAGTCAA
AGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTC
Found at i:498536 original size:25 final size:24
Alignment explanation
Indices: 498494--498540 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
498484 TGTAAGAACT
498494 CGACCGAAAGGGAGAGGAGTGAAG
1 CGACCGAAAGGGAGAGGAGTGAAG
498518 CGACCGAATAGGGCA-AGGAGTGA
1 CGACCGAA-AGGG-AGAGGAGTGA
498541 GTGCGCTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.38
25 12 0.57
26 1 0.05
ACGTcount: A:0.36, C:0.15, G:0.43, T:0.06
Consensus pattern (24 bp):
CGACCGAAAGGGAGAGGAGTGAAG
Left flanking sequence: Indices 497994 -- 498493
TAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTAAGTTTTAA
AAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGAT
CACAGACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCA
TCCATCCAATGCATTCTTTTCGATCTTGTACCTTAACCTTAGTACACTGAACACCAACCCAATCT
CAAGGAAAAAAAGAAAAACTACAAGCAACTAAAGAAGGGTGACGAAGCTTCTTTGCATCCCATAG
TGCTGTCGCACTAAGCGACTACCGTTCCAGAGTCGTACAACGAAGTGATTAGCATACCAGAGTGA
CGCAAGGCTCTAAGCTCGTACCTTATAGCTCTTTATGCTCTCTCCGCTCGCTCCTTTTCGTAGCG
TAGATCTTGATTCTCTTACGATATTTTGAGAGGTTTGTAAGAACT
Right flanking sequence: Indices 498541 -- 499040
GTGCGCTTTCGAAAGTTTCGACTTTTCGCCCCAGACTCTTCTTTTATTTATTAATAAAATAATCC
AGATATCTCCGAGAAACTACACTAAAGGGAACTGTTAAGTACAGACGATGCCTAGAAATGATAGT
AACACCTGGGGCCTTCGAAATACCAAATTCCAGCTTAAGTCCAACAGGCCTACACTTTAACTAGG
AACAGAAAGGTCCGCGAAATAACCGCGTTGCTCGATCAGTGAAACCAGAGTGATGGTCTTCTGGG
ACGATACATTCGTAATGGATCCATCATATACGTTTTTTTAGATGGTTTTCATTTTGAGCGAGAGT
CTTCAACTAGGGGGATCCGGAGTTGCCGAAATCTATACTAGTTTGCCCAGTAATGTTGTGGCTGC
AATGCGTAGGCCGTCGTTCTCTGCTCTTTTTTACTTTATATACGCAATTCAAAGTCGGAATTTGC
TGGTAGGAATAAGAGCAGTAGCTGAACTATCCCGCTTTTAGCCCG
Found at i:541010 original size:28 final size:28
Alignment explanation
Indices: 540956--541010 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
540946 GTAGGGAAGA
* *
540956 ACTGACTTGCTAGAGTAAGGGATTTCTC
1 ACTGACTTGCTAGAGTAAGGAACTTCTC
* *
540984 ACTGACTTGTTAGAGTCAGGAACTTCT
1 ACTGACTTGCTAGAGTAAGGAACTTCT
541011 TACAATCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (28 bp):
ACTGACTTGCTAGAGTAAGGAACTTCTC
Left flanking sequence: Indices 540456 -- 540955
GCGACCCGGAGGCACCCTCTGCCGCCGTTACAATGGGAATGCATCCGCCCTAATGGAAATGAGAG
GCCGATCGAGGGAAAAAAGTAGTCAGTCTTCTACGAAGCTGTAACTAGTAAGGCTAAAGTAGCTG
TTAATGAATAAAGAGAAGAGGCTAGTAGTTCGTGGCTTGGTCTTCACTGACACACTATCTGACCT
TTCAGGTTCAGTTTGTATTCAATGAACCAATACCCACTAAGAAAGTTCCTTACTTAAAGGCTTCT
AGAAAGCGGTTTAAGGGGAGCGCTTCGCATTACATCAGTCTGCACCGGGGGATGGGCATCAGAGC
CATCGAGGAGTGGCAAGGACCGATCACTTTCTTCCTAGAACTTCCTTTTGAGGAAAGCCTTGCTT
CCGCTACGGCTCTGCGCTTGCTTTCTCGAAAGAGTAAGGACGGAAAGAGATATCAACTTTTGAAG
CGGCAAGGAACGAAGTGCTCGACCGGAAGGGAGAGGTAGGGAAGA
Right flanking sequence: Indices 541011 -- 541510
TACAATCTTTTTTTGTGAACAAAGATAGGCTATGAGCTGTAGGACTGCACTGAGATGCCAGAACC
GAGCTCCAAGACTACAGTTGCCGAAGCGGACCTGGTTATGCCATCTATAAGGAAAGGCACTAGCT
TGATGAAACGGCGGAAGCCTAAAAGTTCCATGTTTCCGTGTTGAAAGCCATTTCTGTACTGTAGT
TTTCGGAGCTTGGCTTTTCAGCCGTAGCTTTCTGCTCGCTTCGGATCGATCTGTGCTGTGCCTTG
ATCTCCGGCCATGAATCAAAAAAAAGATTCCTCCTGGCAAGTGACTTAAAGAAAACAAGTGAAGT
AAGCTCCCCCCGATACAAGCGAGCTAAGGGGCTTGAAGTTATCCCAATACCAGAGAGACACTTCA
CAGAGTGTGATACTAAAGGTTAGGGGGATGGTAGTAAATCAACTGCAAGCACATGAACTCGCTAT
ACCAATAGTTCTCTGCCCGCAACCCCAGCTCCTACTTCGAATGAT
Found at i:563780 original size:15 final size:16
Alignment explanation
Indices: 563762--563794 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
563752 GAGTCAGCCA
563762 AAAAG-AAAGACCACC
1 AAAAGTAAAGACCACC
*
563777 AAAAGTAACGACCACC
1 AAAAGTAAAGACCACC
563793 AA
1 AA
563795 GATACGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.58, C:0.27, G:0.12, T:0.03
Consensus pattern (16 bp):
AAAAGTAAAGACCACC
Left flanking sequence: Indices 563262 -- 563761
GGGGCTTAGGTCAACACTTATATAATAGCCAGTCATCAATTGGAAGCGGGCAAGATGGTGATGAA
TTGCAATTGGTCTAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGCCAATACATACT
AAGACCTTATTCACATCAGGAGGAGCGAAGCAGCTCGAGGAGGAGCTAGGGCGGACCCAAGAAGC
CCAAGAACGGGATAGGGCCCGAGCCGTAGAGCGACAAAGACTTTGGCAGGACATATATAGAATCC
GCCAAAGAAGTCAGGTTTTCCAAATCGAAAAGGAAAGACTCAGATTCAGAATTAATGAAATTCAA
TATCAGCAAGACCGACGAAGAAGATTCGGTCGTGGGTAGAAACTTTGCTTGGGCCTTTCGTTTTC
GATTCCCATTAGCCGGGTAGCCTTAAAATTCGCTTAGTAGCTTAACTCTTTCTACTGGCGTGGCG
CTGCTGGATGCTTCTGATCAATAGAACAGGAAAAGGAGTCAGCCA
Right flanking sequence: Indices 563795 -- 564294
GATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTGGAAAACCATTTTGGGGGGCTTCCGC
CTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCTTATATACTGTGTTACGATCACCTCAT
ATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAAAAC
AGAAACGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAAG
ACTTCTTGGTCAAGCCAAAAAGATTGCCGGCAGAATGCTCCTACCCCACCATGCCTGGCCCTTTA
CCTTACCTTAAGAAGAAATGGGGGGGTATGAAGCGTGGGAAAGAATGCAAGAAGTGTATGATACA
ACAGGTAACCTTAAGGAGTGGCGGCAAAGCTCTTGATTGATCAACGCGAGTGAACTGTGCTTAGA
CGCTTCGTAAAACCGCACCGATCTACGAGAGGAGCTGATGGATGA
Found at i:587962 original size:16 final size:17
Alignment explanation
Indices: 587930--587975 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
587920 CATCCCTTGG
587930 GGTTAGTTCATTCTCTT
1 GGTTAGTTCATTCTCTT
*
587947 GGTTAGTTGA-TCTCTT
1 GGTTAGTTCATTCTCTT
* *
587963 GCTTAGTTTATTC
1 GGTTAGTTCATTC
587976 CTATTACTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.13, C:0.15, G:0.20, T:0.52
Consensus pattern (17 bp):
GGTTAGTTCATTCTCTT
Left flanking sequence: Indices 587430 -- 587929
TCCCTTTTTCAGCTTTTCCGTACTTGCTTAATACACTAATTCTGCTTCATTCCGTTAAGCTATAC
CTTGCCTTGAACCAGACCTCGTGCTTGCCCTAGCAAGAAAACGGATGCGCGTTAGCCTATCTATA
CTATAGTAGGGGGCTTTCGCTAACGCGCGCCCCTATCTCGTCAGCCGTTGCTTGTTTAAGAAACC
GCTTTTTTTCGGCACTCGGTTCCTTCGTCTTAAGTCAAGTTCAGTTTACTTTTTCGATTCGGAAC
TCTTAGTCGGTGAGATCGATTTTTTGTTCGAGGTTCCAGAAAAAAGAGAGGAAGCACCGCCCAAT
GGTGCTTTTACGAAAGTACGGTCACCGGTGGCTAATACCTTCTCGACACTATCGAACCTGAAATC
CACTCTCAATCGCTCTTTTTAGTGGGGAGGAATTGTTTTCGGAATTATTTTTTTTCCTGGGGCTT
TCAATGGGACCATGCCTTGGATTTCAATCCGAGATCATCCCTTGG
Right flanking sequence: Indices 587976 -- 588475
CTATTACTGCCCCTCTTTTGCTTGATGAAAGACATCCTGGCAAAGGCTGTGTATATTAAAAAAGG
GGACTTTCATGGGTCCGATGGCTCTTTGACTGGTGTGCCTGAAAATGTGATGGATAAATGGGCTT
TTGAAACTCGATTTGTCGCAACAAAACAAGAGGTATTGTCTCCGCCTTTTCAAGTAGGGATCATC
TCTCAAGTGTTATGATCCTCCATTGCTGCTCGGTAGTGGCCTAAGGCTCAATGATTGATCTTCTG
CGCTAAGGCTAGCATCTCATCCCATCTTTCATCTACTAGCATTTCTCATCTTTCATCTTATTGCT
TTGAGCTCTCTTCGGAAAAGTGTAAAAGTGTAACCTGCTGCTCCTTTTGGTCTTCTCTTTCTGTG
TCTATTGATCTCCTGCCCACTCACATTCTCTTTATCGAATCCTTCTAGGCAGATATGACTACTCC
TGCTTGCTCTTGGCCTTGGCTGCTTAGAGACATCCCTTTAGTTCG
Found at i:595894 original size:22 final size:22
Alignment explanation
Indices: 595866--595907 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
595856 GCTTCGCTTC
*
595866 TTTAACGCATCTTTAAGGCTGA
1 TTTAACGCATCTTGAAGGCTGA
*
595888 TTTAACGCTTCTTGAAGGCT
1 TTTAACGCATCTTGAAGGCT
595908 TCTTTCTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (22 bp):
TTTAACGCATCTTGAAGGCTGA
Left flanking sequence: Indices 595366 -- 595865
GGGAGAGAGGAAGAAGAGGCACCCACTAGAGAAGCAGCAAATGATATGGCTCGTTCGTATAGGCA
GATAAAAAGTGAATGCCTATGTGCCAAATAGCGTGACTCAAGATAGAATTGCAGCTTGTCAATCA
AGGTCCGGATCGAATCGCATTGAGAAGGATTTGGAGTAGGATAACTAGGTTGAATGCATTGGACT
GAAAGCTGACAGCAAGCATTCCTTTATGATAACAGACTAAGGACAGACGGGAGGAATGGGATAAC
TAACTACGACGGCTGGACCATAGAAGACTGGAAGGAAGATACTTGGAAGGCTTACAAGCCTAGAT
GGACAACAGCTTAAGCGATACGGATATGGTGATAGACCGGCGAACACATGAACTACCTCTAATTC
ACCTACCACCTATTCATCCCTTTACTCAAAACTAAAGAATGATTGGGTAGATCGACATAAGAGAG
GGTGTCAAATATACCTCTGTCAAACGTCCCCTTGGGCTTCGCTTC
Right flanking sequence: Indices 595908 -- 596407
TCTTTCTGGTGTCGGTACCCTGGACCATAAGTAGAATGAATGTTCTACTTAAACCAGCTATGACA
GGTTTTCGGTAACCTTAGCCGAACTCGGGTGACTGAAGGATATTATGATTCAAGCTCTGAAGCGA
ATTCTTTTCTCTATTGTACCCTCATCGACATCTCCTTACGCTGATTCAATAGCAGCTGGGTCGTG
AACAAGAGCTGAAAGACGTGAAAGCTCAAAGCTACTGGTTCTGTCATACTCGATTCTATTTCTTT
CGACTTGAAAGTTACTGCCTTTTAATTTGAACTTCTCATTTCTTACGCTAGCAAAGCAGGCTTGC
TTTAAACCATACCTGCTATCAAACGGGAGTGAAGAAGTGTCTTGCTCTTGTTGACTTACTACTTA
AGGGATAAGGCCTTTTTCTTAGAGGGCGTAGGAAAGAAAAAGAAACTACAACTCAAACCCCTCCA
AAAAAGAAATATTCCTAGTAGCTTTAGTTGTCAGGTTATAGTTAC
Done.