Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_044153
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 684857
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
File 2 of 2
Found at i:436517 original size:22 final size:22
Alignment explanation
Indices: 436491--436558 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
436481 GCTACGCAAC
**
436491 TAATAGAATAGTTCAATTCTCA
1 TAATAGAATAGTTCAATTCGAA
** **
436513 TAATATCATAGTGAAATTCGAA
1 TAATAGAATAGTTCAATTCGAA
436535 TAATAGAATAGTTCAATTCGAA
1 TAATAGAATAGTTCAATTCGAA
436557 TA
1 TA
436559 GGCTAATATC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (22 bp):
TAATAGAATAGTTCAATTCGAA
Left flanking sequence: Indices 435991 -- 436490
GGCTAAACGCTCCTACTTCAATTAAAGCTCGCCCTCCCTCACTAGAAGTCAGTTTTCCCACGTCC
GGTAGACTTTCTTTCTACAACCTTGACTTGAACTAATATCATAGTTCAATTAGTTGCGTAGCAGC
TGCGCGAAAGCCGTTGCGCCTTACTAAGCAAGAAAGGGCAAATTGAAGACTGAGAACAACTAATA
TCATAGTTCCATTCTCATAGGCATATTTGATGATGTCGCTTCATTCAATCCACCCTCGTTGGAAA
GCTAACACCCAATTTGCGATGCTTTTAAGCCCCCTTTCCGAACTCTAATGTGAGATTGGTAATGA
GGGAGGTTTAAGCCGTGTTAAATGTGCCGCAAATGGCCTTACTTCTTGCCTTCTAATAGAATCGT
TCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTT
AAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAAC
Right flanking sequence: Indices 436559 -- 437058
GGCTAATATCATAGTTCAATTCTCATAGGCATATTGGATCGAATAGGCATATTGGAAAGTACAAT
TTCGGTTTGAAACGTCGCATTTCTGCTTTTCAAAAGGGGCGAGGGCTGGTGGTGAAGGAAAGGGG
GAAGCGACTCGTTCCTTCCTTGCTTGTTAAAACTCCTTTCCTCTTCAAGCTAAACTCATTTGTCT
TTCACTTCATTGTGAAAGCGGGTTGAGTTCATACATTTTGAATGCTTGAAGAAGAAGATCGCTTT
AAAAGGAAAGGAGTGGAAAGAAACGAGACTGTAAGGAGAGGAGTGTTGAAGAACAGAGAGGAAGA
GGAGTGAAAGAAGAACAGAGAGGAAGAGGAGTGAAAGAAGAACAGAGAGGAAGAGGAGCGTAGCA
GTTCGAATTGAACTATTCCACAAGGAAGCAGAAAGCGGTTGCCGCCGAGGCTGTTTAAGTTGCCA
AGGCTGTAGCTGCAGATCTTGCCCTTCGTTCATAGTTCGCGGCTT
Found at i:436901 original size:27 final size:27
Alignment explanation
Indices: 436866--436941 Score: 152
Period size: 27 Copynumber: 2.8 Consensus size: 27
436856 GAGGAGTGTT
436866 GAAGAACAGAGAGGAAGAGGAGTGAAA
1 GAAGAACAGAGAGGAAGAGGAGTGAAA
436893 GAAGAACAGAGAGGAAGAGGAGTGAAA
1 GAAGAACAGAGAGGAAGAGGAGTGAAA
436920 GAAGAACAGAGAGGAAGAGGAG
1 GAAGAACAGAGAGGAAGAGGAG
436942 CGTAGCAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.51, C:0.04, G:0.42, T:0.03
Consensus pattern (27 bp):
GAAGAACAGAGAGGAAGAGGAGTGAAA
Left flanking sequence: Indices 436366 -- 436865
TTCTAATAGAATCGTTCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTA
AGAAAGTAATCTCTTAAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATA
GAATAGTTCAATTCTCATAATATCATAGTGAAATTCGAATAATAGAATAGTTCAATTCGAATAGG
CTAATATCATAGTTCAATTCTCATAGGCATATTGGATCGAATAGGCATATTGGAAAGTACAATTT
CGGTTTGAAACGTCGCATTTCTGCTTTTCAAAAGGGGCGAGGGCTGGTGGTGAAGGAAAGGGGGA
AGCGACTCGTTCCTTCCTTGCTTGTTAAAACTCCTTTCCTCTTCAAGCTAAACTCATTTGTCTTT
CACTTCATTGTGAAAGCGGGTTGAGTTCATACATTTTGAATGCTTGAAGAAGAAGATCGCTTTAA
AAGGAAAGGAGTGGAAAGAAACGAGACTGTAAGGAGAGGAGTGTT
Right flanking sequence: Indices 436942 -- 437441
CGTAGCAGTTCGAATTGAACTATTCCACAAGGAAGCAGAAAGCGGTTGCCGCCGAGGCTGTTTAA
GTTGCCAAGGCTGTAGCTGCAGATCTTGCCCTTCGTTCATAGTTCGCGGCTTGTCTTCGCGCCTC
TCCTTATAGTAAGAGTTTTCTTAGAACAGCGCCCCTCTCCCTACAGTCGAGTAGCTTCGCCCCTC
ACATTCGTTCTCGTTCAAACAGCTTCGCCCCCGGTCGAGCTTCATTACGTCTACCCGGTCGAGCT
TCCTTCCCCTTTCGTCTTAACTACAACTACATTACGCAAGCTCCACCAATACCTATACCTACCTA
TAGAATAGAGTCACAAAAGTACCAGTGACGGTGACTTTGACGGTTTATGGATTCAGTCAGCTAAA
CTCCTCAATAAATATCAACAAACAACATGTCGTGACCGGTCTAGCTAAGTTTCCAAAGGTGAACA
GCCCCCTGTCCTTTATAGTCGTAAAGAGCTTCTCAGAAAAGTAAG
Found at i:438423 original size:22 final size:22
Alignment explanation
Indices: 438397--438486 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
438387 GCTACGCAAC
* *
438397 TAATATCATAGTTCCATT-TGAA
1 TAATATCATAGTTCAATTCT-CA
**
438419 TAATAGAATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
438441 TAATATCATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
438463 TAATATCATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
438485 TA
1 TA
438487 GGCATAAAAG
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 60 0.98
23 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.40
Consensus pattern (22 bp):
TAATATCATAGTTCAATTCTCA
Left flanking sequence: Indices 437897 -- 438396
TTCACGAACGGGTATCTCTTTAAAACAGCTACGCTTCTATACTTGTTGGAAGGAGCGAAAGCCAC
TTGACCGTAGGGAAAGGAGCTGAAAAGCGACTCGACTTACAGGAGAGGCGCGAAGCTGTTTGACT
TTATGTAGCAGGGAAAGGAGCTAAAAGCAACTCGATAGACTATAAGGGAAGAGAGGAGTGAAAGA
AGAATTGAGAACGGGAACCTCGTAGCTTTAAGATCGATCGGACTTGGCTTACCAATTAGAATAGG
CATATTTGATGACGAAGCGAAGCTACGAGTTCAGGGAAAAGGAGTAGGTTCGAAGTTCCTAGCCC
GGCTTGAAGCCAAGTTTCATTCTTTAACTGCTACATCAATTCCTTATAGTTCAAACTGGAATTCG
AGTTTCTAGTCTCGTTTCCGCTTAGAAGAAGATCGCTTTAAATGGAACGCCTTTCCAACTTCCGC
TCCGTTTTCCTTATAGTAAGAGTTTTCTTAGAACTGCTACGCAAC
Right flanking sequence: Indices 438487 -- 438986
GGCATAAAAGATGATGTCGCTTAGAATAGGCTTTCCACTCCTCTCCTTTACTATAAAGAAGGAAG
TTCCAAGCCGCTTGCTTGACTATAAAGTTTGGAGAGGAACGAAGTCACTTGACCGCAGGGAAAGA
AGCTGAAAGCAAAAAGACTTACAGGAGAGGGGCGTTTAGCTTAGAGAGAGGGGGCGAAAGGCGCG
AAGCTGCTTGACTGCAAGGAAAGGAGTGGAAAGCCTATTCGAATTGAACTATTCCGCAAGGAGAA
AGACTTACTTGTTAGAGGAAGGGAGTTTATTTCCTTACTCTAAGCGGAAGAAGAACAGCGTAGCT
TGCCTTAGCGCATCCCTTTTCATTTCATAAAAGCAAGTAAACTCCCTTTTCTTTTCATTAATGAC
GGAACGAAGGTAGCTCGAACGAATGTGAGAGGCGTGGAAGAAGCTTTAAAAGGAAAAGCGCGAAA
AGCAACTTGACTATAAACTTAGAACTGCTACGCAGTTCTAATTAA
Found at i:439563 original size:22 final size:22
Alignment explanation
Indices: 439519--439564 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
439509 GCTACGCAAC
***
439519 TAATAGAATAGTTCCATTAGAA
1 TAATAGAATAGTGAAATTAGAA
*
439541 TAATAGAATAGTGAAATTCGAA
1 TAATAGAATAGTGAAATTAGAA
439563 TA
1 TA
439565 GGCATATTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (22 bp):
TAATAGAATAGTGAAATTAGAA
Left flanking sequence: Indices 439019 -- 439518
TCTTCTGTGACCCTCGTCTGGGAAGCAATCCTTAAACTCATGGCACACTCACTATATCTATATAC
GTCAAACTTTGACGCCTTTCGAAAAAGCCACTCGTTTTTACTATAAGGAAAGGCGTTCCAATGTG
AGAGGTGCGGAGCCACTTTCCAGTTAAGGAGAGGAGTGTTGGCCGGTAACGAAACTAAACACGGG
TCTTACTTCCTTTTCTTTTCCCCCTTGAGAATCGATTTCAAACCGGTCCGGAAAGAGAATCCGCT
TTCATCTGACCTTCGAAACTCTCTTCTCATACTCCTCGTTGAGTCTTTCTATTTAGAGAGAGGAG
CGGAGCCACTCGAACGAATGTGAGAGGGGGCGAAAGAAGAACAGCTACGCTTCTAATATCATAGT
TCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTT
AAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAAC
Right flanking sequence: Indices 439565 -- 440064
GGCATATTTGATGATGTCGCTTCCGGTATAAGCGATGGTCCGGGCTGGGCTATAGTAGTTGCTAA
AGGCGCTAAAGCGATGGTCCGGGCAGAAAAGATCAATGAAAGACTAGAGCGCGAGCTAGCTGATC
TACCGACAAGTCCTTGATTTCTTATCCGCGAAGTCAGATAGTTCTTTCTTGCTTTCTCCTACTCT
TTCTTTATCGTATTATAAAGAACTTGCCTTCCTTGGCTACTAAAGACTGTAAGGAGTTCCAAGCA
ACGAGACTGCTAAGGAGTGGAAAGCAACGAGACTATAAACTTAGAAGCGTAGCTGTTCGAATGGA
ACTATTCTCCTATTCGAATTGAACGATTCTATTAGTTTCACTATTCTCCTATTCTCATTTCAGTT
TTGTTAAGGCCTATGAACTGGAATTGAATATTCTTAATCGTATTATAAATCACTTGCCTTCCTGT
GTTGCTAAGGGAAAATGAAGAACAGGAGCGAAAAGACACTTGACT
Found at i:439831 original size:25 final size:26
Alignment explanation
Indices: 439803--439858 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
439793 TGGCTACTAA
* *
439803 AGACTG-TAAGGAGTTCCAAGCAACG
1 AGACTGCTAAGGAGTGCAAAGCAACG
*
439828 AGACTGCTAAGGAGTGGAAAGCAACG
1 AGACTGCTAAGGAGTGCAAAGCAACG
439854 AGACT
1 AGACT
439859 ATAAACTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.14
Consensus pattern (26 bp):
AGACTGCTAAGGAGTGCAAAGCAACG
Left flanking sequence: Indices 439303 -- 439802
TCTCATACTCCTCGTTGAGTCTTTCTATTTAGAGAGAGGAGCGGAGCCACTCGAACGAATGTGAG
AGGGGGCGAAAGAAGAACAGCTACGCTTCTAATATCATAGTTCAATTCTCATAGGCAAGAAGTAA
GGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTTAAGTAAAGGGTACTAATAGTTCTT
TAATTAGAACTGCTACGCAACTAATAGAATAGTTCCATTAGAATAATAGAATAGTGAAATTCGAA
TAGGCATATTTGATGATGTCGCTTCCGGTATAAGCGATGGTCCGGGCTGGGCTATAGTAGTTGCT
AAAGGCGCTAAAGCGATGGTCCGGGCAGAAAAGATCAATGAAAGACTAGAGCGCGAGCTAGCTGA
TCTACCGACAAGTCCTTGATTTCTTATCCGCGAAGTCAGATAGTTCTTTCTTGCTTTCTCCTACT
CTTTCTTTATCGTATTATAAAGAACTTGCCTTCCTTGGCTACTAA
Right flanking sequence: Indices 439859 -- 440358
ATAAACTTAGAAGCGTAGCTGTTCGAATGGAACTATTCTCCTATTCGAATTGAACGATTCTATTA
GTTTCACTATTCTCCTATTCTCATTTCAGTTTTGTTAAGGCCTATGAACTGGAATTGAATATTCT
TAATCGTATTATAAATCACTTGCCTTCCTGTGTTGCTAAGGGAAAATGAAGAACAGGAGCGAAAA
GACACTTGACTTACAGGAGTTCCAAGCAACGAGACTGTAAGGAGTGGAAAGAAGAACAGCGTAGC
AGTTCCCCTTTCTCCTATTCTCATTTCACTAGACGAATGTTCGAGGAGTTCCAAGCCTTGTTCGA
ATTGAATAGTTCCACAAGGAGAAAGACTTACAGGAGTTCCAAGCAACGAGACTGCTAAGGAAAGA
GAGTTGCTACGCTGTTCTCATTGAACTATTCTCCTATTCTCATTTCACTATTCGAATGTGAGAGG
AGTGAAAGCTACTTTCCTGTACTTGACTTACAGGAGTGGAAAGAA
Found at i:440596 original size:15 final size:15
Alignment explanation
Indices: 440576--440604 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
440566 TTAAGTATTA
440576 GAAGCGTATTAGAAG
1 GAAGCGTATTAGAAG
440591 GAAGCGTATTAGAA
1 GAAGCGTATTAGAA
440605 CTATGATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.31, T:0.21
Consensus pattern (15 bp):
GAAGCGTATTAGAAG
Left flanking sequence: Indices 440076 -- 440575
CAAGCAACGAGACTGTAAGGAGTGGAAAGAAGAACAGCGTAGCAGTTCCCCTTTCTCCTATTCTC
ATTTCACTAGACGAATGTTCGAGGAGTTCCAAGCCTTGTTCGAATTGAATAGTTCCACAAGGAGA
AAGACTTACAGGAGTTCCAAGCAACGAGACTGCTAAGGAAAGAGAGTTGCTACGCTGTTCTCATT
GAACTATTCTCCTATTCTCATTTCACTATTCGAATGTGAGAGGAGTGAAAGCTACTTTCCTGTAC
TTGACTTACAGGAGTGGAAAGAAGCTTTAAAATGAAGTGAGAGGAGCTACGCAGTTTGAACTATT
CAATTCTAAGCGTAGCAGTTCCCCTTTCTCCTATTCTCTCTGTCTCGTTGCGTAGCAGTTCTCAT
TTCACTTTCATTTCATATTCTTAATCGTATTATAAATCACTTGCCTTCCTTAGAGACTGTAAGGA
GTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTTTAAGTATTA
Right flanking sequence: Indices 440605 -- 441104
CTATGATATTTGTTGCGTAGCTGTTCTCATAGAATAGTTCAATTAGTTGCTACGCTGTTCTAAGA
AAACTATTAGTAGCAGTTCTTCTTATTCCCCTCTCCTTCCTATAATAATAGAAGCGAAGCAGCTT
GAACGAGACTGTAAGGAGTGGAAAGAAACTCGAGCGAATGCGAGAGGAGTGGAAAGCTTTAAGTA
TGATAAGCGTAGCAGTTCTCATTGATTATTATTAATCGTATTATAAAGAACTTGCCTTCCTGTGT
TGCTAAGTTTATAGTAAGGAAAGAGAGGCGTAGAAGCAACTTGACTGTAAGGGTTTCCGCTACGC
TGTTCTCATAGAATAGTTCAATTTGTTGCTACGCAGTTCGAATCAGGTATGAAGAGGGAAAGAGA
GGCGCGGAAAGAAGAACAAGGGTTGGAGCTACGCAACTACACTTGTTGGAAGGGTTGGAGCGTAG
CAGTTCTCATTTCCCCTTTCTCCTATTCTCATTGAACGAAAAGGG
Found at i:441831 original size:32 final size:32
Alignment explanation
Indices: 441807--441872 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
441797 ACGTTGCGTA
441807 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
1 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
441839 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
1 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
441871 GC
1 GC
441873 TATAGTAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (32 bp):
GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
Left flanking sequence: Indices 441307 -- 441806
AAAAGACTGTAAGTCGAGTTGCTGAAGCGACATCATCTCATTGAACGTAGATATTTGTTGCTACG
CAGTTCGAATCAGGTATGAAGAGGGAAAGGAGCTAAAAGCAGCTCGAGCGAATGCGAGAGGAGCT
AAAAGCAAAAAGACTGTAAGTCGAGTTGCTACGCTCAGTCGAGTTGCTACGCAGTTCTCATTTCC
CCTTTCTCCTATTCGAATTGAACTATTCCACAAGGAGAAAGACTTACAGTCGAGTTGCTACGCTG
TTCTGCTTTCCACGCCTTTCCTTCCTTAAAGTTAATACATTTCTTATTCTTTATCGTATTATAAA
GAACTTGCCTTCCTTGGCTACTAAAGAACTTGCCTTCCTTGTTCTCAATTAGTCGGTGAGTTGGC
TTCACTTCCGGGGACCGGCCCAGCCTTGAAAGTCAGGGAAAGGGCGCTACTGGGCGGAAGCTACT
CTGTTATCTCACGTTCTTCATGAGGACGAAGCCAGACGTTGCGTA
Right flanking sequence: Indices 441873 -- 442372
TATAGTAAAGTAGCGTTATTGAACACCAACCAAATCTCGACAAAAAACACTGTAAGGAGAGGAAA
AGTATGGATTAGAAGCGTAGCTGTTCTAAGGAGAGTTGCTACGCTGTTCTCCTCTTTTCTTCTCT
TAATCAATTATCAATTGAGAGTTAGAAAATGATAACACAAAAATGCATTGTGGAATAGTGAAATT
CGAATAATAGAATAGTGAAATTCGAATAGGCAAGAAGAGCATTTGAAATAGGAGCAGAGTCTGTC
ACGTGCAGCCTACTCTCTTCGCTCCCCTCCTCTTATCCTTCCTTTCTTTCATAAGGCAAGGCCTT
TAGACTAGCCCTCTTCTGGAAAGAGATTCTATAGCACCGGAGTCGTTCAAAGAGCCCTTCTTTCT
ATTTTGTGCGTGTCAACTATTGATTCTATGCCATCAAAGCATGCTAACAGCAGAAATGCAAGTAC
ATACAACTGCGGTAATGCCGCATCGTTGATAAAGAACCTTGCCAT
Found at i:448784 original size:15 final size:15
Alignment explanation
Indices: 448764--448793 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
448754 GAGGTGCAAA
448764 TGCGCTAGATATAAT
1 TGCGCTAGATATAAT
448779 TGCGCTAGATATAAT
1 TGCGCTAGATATAAT
448794 ACTTACCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TGCGCTAGATATAAT
Left flanking sequence: Indices 448264 -- 448763
GGTTCCACTCCTCTCCTGTAGATGGAATAAGGTTCTCTTTCTAAAGTGGTTTTGCTTGAAGCTAT
TCCTGATTACCGATTCGCTCTGGCTGAACGATTGTAAACCGCTCCGTTTTCCTTATAGTAAGAGT
TTTCTTAGAACAGCGTAGCAACTAATTGAACTATGATATTCTAACAAGGCATGGAACGCCTTTCA
AAGGAGAGGAGCGAAGCAGCTTGAACGAGACTTACAGGAGAGGGGTGAAGCGGTTTCCTTAGCTC
CTTATCCACGTTTTTTCCAGTTACACTAACGAAATCGCGACTTCCTGAAGAATGTGAACTTATAT
ATATATAATATAGAATAGAACAGCATATTTGGTGAAACAAAGAGCGATTCGGTCAGAAGCAGCTA
CCACACACTCAATCCGATGAACAAGCACATAAGCAAGACGAATCTATTTCTCTTTCCGTATAAAA
TGAAAGCCTAAAAGGCTAAAGCGCATACATATAGAGAGGTGCAAA
Right flanking sequence: Indices 448794 -- 449293
ACTTACCAGAATCTACCGGCTTGATTGAAATAGTGCGGTACGAATGACTTTCTTTAATAATTATA
TACCTCTCTTAATAAGAAGAATACGTTCTAGTAACTTCTCACTTTATTCAATCAACTGCCTATCA
TGCAATGCCTTCCCGAAAAGAAAACGAACTAGAAATGGGTTTACCTATCTAGTGGAATATCCTGA
CTATACCCTAATCTCCACCCATCCTTTGCCTTGCCACCGCTTCCTCAAAGACCAAGACCAAGTAT
TACCAATTCCCATCGAGAAAGAAAGCAATCTCCACTGGAGCGGGAATAGCACTCAAAGTCACCGT
CAACAGGCTCTCCAACTCGTTCGTACCGTTCGTAACCTCGTTGGCTTGGATTCGTCTCCGTCCCA
ACTCTCTTCCCTTCGCGTACTCGTATGTCCTTTTCCCACTCCCCTCGCTCTACTAATTGGTATGA
TGACCAGTAAGAGGAAGCAACATAGTCATATTAGCCAGAGCACCC
Found at i:452934 original size:21 final size:21
Alignment explanation
Indices: 452893--452934 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
452883 TTGCTCGGTT
*
452893 AACCCTCCAAAACAGTTTCAA
1 AACCCTCCAAAACAGTCTCAA
* *
452914 AACCCTCCAAACCTGTCTCAA
1 AACCCTCCAAAACAGTCTCAA
452935 CCCCTCCGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.38, G:0.05, T:0.19
Consensus pattern (21 bp):
AACCCTCCAAAACAGTCTCAA
Left flanking sequence: Indices 452393 -- 452892
TCTATTTTGTCTACTTTGATTTATCTGTCTTTATTTTCAGACTAAAAAGTGGAAGCTTTATTATA
AGACTCTGACTTCTTCAGATTGAAGAGAGAGTCTATGTCTTTGATCTGCTTTCTGTTGAAGGAGT
ATTGTGCGATGAACAGCTTGCACAACTGAGGGAAGTTCGAGATCGTCTTCGATGGGATCTTGTAG
AGGTAGAGACGCGGCGAATCGTACGTTTTGTTTCCATTCCCTTTCAACACAACTATCAATTTCGT
ACGATTCCTCGGGCCTGGTGCTTCATTTCACTAATAAATCATCTTATTATCCGATGCTCCCTTGT
AATAGGGGAATTGGGGCTTTTATTAGTACTACTCTGTCATTCCTCCCGTTGCTTTCAATGTCTTC
TTTTAGCTTCTTAGGTGCTTCCTCTCGGGTTTGTGTTACTGGGTTAATAACTAGTGACTTGTGAC
TTCCTTTTTTAATCCCTGCACTCACAGTCTTAGTCTTGCTCGGTT
Right flanking sequence: Indices 452935 -- 453434
CCCCTCCGGATACAAGCCCTTTTTCCGGTTCCTCGATAAGACTATTTCCTTTCCTATCCCTTCCC
TATAATGATACCTGTCTGTATGTTATTTTAAGCCGCGTTTCCATATCCTGGGTCTTCCCTAGGTC
TTTCATTCGCTTCGGATCTTGTCTCCCGCTTGTTCAGTTTGTCCGAGTATGGAGGGGTTGCGAGT
CTAACCACCGCTTTGCCTAATGCAACCCTTTGTCCGCCATACTGGACCCCAGGTTTCTTTGGAGT
CGTTTACAATGGCGCCTCAATGTTGTTCCTTTGATATACATCCCTGTCCGTCTGAACCGATTACG
TTTTCATAGCAGGTGAGTTTCTACAAATCTGGCATCGGTTTCACGGCCAGCGCAGTTATTTCCAT
TCTTACTTTGGAGTTCTCTAGAACAGTGATAGTTTGATATACATTACGCCATCAGCCGTCATTCC
ATGAGAGGAGGAGGGTTTCGCTCCCTCTGCTTTGAGAAAGCAAAA
Found at i:480343 original size:42 final size:42
Alignment explanation
Indices: 480295--480378 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
480285 CGTGACTAAC
480295 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
*
480337 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
480379 CCCAATCGAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.11, C:0.33, G:0.27, T:0.29
Consensus pattern (42 bp):
GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
Left flanking sequence: Indices 479795 -- 480294
CATACACAAAAGGAATTCCTTTCTTGTACGATACAAAATGAATTTCAGAAAATTACATTACCCTT
AGAGAAGACTTTTCCAGATTCCACTTTTTCCTTTTCTGGCTCCGATTTTGTGTAACTAAGAATTT
GAAAAAAAAAAGATATCTCATTCAAATTTCACACTGAGTTTTTGATATATGCGTCCCAGTACTAA
TGAAGGAAGGAGGATATTAAACAAACAAGGATCCCACCGGAATGAAAAATATTTTCTATTTTTTT
AGGGTCGTACCTATCCAATAATATTCTAATATGAATGACTCGCTATTCACTCGGTTTTTGGGTAA
TAATCATTATGTAGGAGAGATGGCCGAGTGGTTTAAGGCGTAGCATTGGAATTGCTATGTAGGCT
TTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTAACTTCACCTAATTAACTATAGTCGAAGC
AGCAAGAAAACGGCTGCAGCAAGAAAACGGATGCGCGTGACTAAC
Right flanking sequence: Indices 480379 -- 480878
CCCAATCGAGATGTTATCCAAATTCAAGTAATTGTAGTAAAACCTGACCTGTTGACCCGCGATAC
GAACGTATTTAATTCATTTTGTTCTGTAAGACCATAATGAAAACGCAATTTTTTTGGAAATTATA
GACGAATACGATATTGAGATCTTTATAGATCGGTGGCTTTTTCCAAAAGTCTCTTTTTGTCGAGA
GGCACCCATCCTCGTAACGTAAAGGCTGTGGTATCTATCGAACTATCTTTCTCACCGCGGCTCGA
GCAATCCGATTCAAGGGAATCTTCAATCGAGGCGTTGACTTAGATTCCATTCTCTTTTGTTTAGT
TATAGAGGCTCATCTTTCATTGATAGGAATGCAGGTAACCGCACTTGGCATTCCAGACTTTTTTG
CACAAGAGTAGCAATTATCCGCCGATCCCGGGGATAGGTTGTTAGAGAGCAGCAGACAATCTTAT
GAAGACAATTCTTTATAAGACAATCTCAACATTGTCTGCTGTTAG
Found at i:494008 original size:43 final size:43
Alignment explanation
Indices: 493930--494015 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
493920 TCTTTCCTTA
***
493930 TAGTCTGTCTCGTTGCTTCGCGCCCTTCTTAGCTCTCTTCTTC
1 TAGTCTGTCTCGTTGCTTCGCGCCCTTAGCAGCTCTCTTCTTC
* *
493973 TAGTCTCG-CTCGTTGCTTCTCGCCCTTAGCCGCTCTCTTCTTC
1 TAGTCT-GTCTCGTTGCTTCGCGCCCTTAGCAGCTCTCTTCTTC
494016 CCTTATTCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.05, C:0.37, G:0.16, T:0.42
Consensus pattern (43 bp):
TAGTCTGTCTCGTTGCTTCGCGCCCTTAGCAGCTCTCTTCTTC
Left flanking sequence: Indices 493430 -- 493929
ATCTTGTTGATTCTCCTTTCCCCCTTACAATCAAGCTCGAGCTCTCGCTTTCAGGGTGGATACGC
AAGAAATTCACTATGAAAATTGACATGACACAATCCCTGAAGAGTATGATGTGCCCGGCCTTCCT
TCTCTTGATCCCCACCCACCTCCCGTAGAGGCGGGTCAATATCAATATCTATACCAGAGATTGCT
TTTAGCTTTATCTTTTCAGAGACAGGAGAATTCCTTCTGTACTTACAAGAATGCTACTTAGGGAG
AAGAATCTCTTGACTCAGGAGCACCTGAATCTATTCTTTCTGTGTCCCACATCCGCCTATGTTAA
AGCATCCGCCCATTCCTCAGTGAAAGGAAATGCTACTCAGGGATCAAAAAAGAAAGCTGGTGCCT
CGTCAGAAAGACTTGGTTCGTAGAGTAGAGGCCTTTCCCCAAGATATTGGTTTCTTGCTCCTCTC
CTTCCTTACAATCAAGCAAGTGGCTTTCACTCCTCTCTTTCCTTA
Right flanking sequence: Indices 494016 -- 494515
CCTTATTCCTTCTCTTCCCGCTTCAGTTGATGGAAAAGCATTAAATGGGGCAAGGAAGGGGAAAA
TCGCTTATACCGGAAGCGACATCATCTAATAGAACTATTCCACAAGGGAGTTTACTTGCTTATAT
ATAAGGAAGCGACATCTTCGCGCGACGACTGTCTTTTTGATTGGTACCGCAGTCGCCCTTATCAA
ATATGCCTATTCTCATTGAACTATTCTATTATTCGAATTTCACTATTCCACAATGCATTTTTGTG
TTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAACAGCGTAGCAA
CTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTTTTTTGTCGAG
ATTTGGTTGGTGTTCAATAACGCTACTTTACTATAGCGTAGCTTCGTCTAGTTCTTTAATTAGAA
CTGCGTAGCTTCGTCTAGTTCTTTAATTAGAACTGCTACGCAACG
Found at i:494477 original size:32 final size:32
Alignment explanation
Indices: 494441--494506 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
494431 CTTTACTATA
494441 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
494473 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
494505 GC
1 GC
494507 TACGCAACGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (32 bp):
GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 493941 -- 494440
GTTGCTTCGCGCCCTTCTTAGCTCTCTTCTTCTAGTCTCGCTCGTTGCTTCTCGCCCTTAGCCGC
TCTCTTCTTCCCTTATTCCTTCTCTTCCCGCTTCAGTTGATGGAAAAGCATTAAATGGGGCAAGG
AAGGGGAAAATCGCTTATACCGGAAGCGACATCATCTAATAGAACTATTCCACAAGGGAGTTTAC
TTGCTTATATATAAGGAAGCGACATCTTCGCGCGACGACTGTCTTTTTGATTGGTACCGCAGTCG
CCCTTATCAAATATGCCTATTCTCATTGAACTATTCTATTATTCGAATTTCACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 494507 -- 495006
TACGCAACGTCTGGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGC
GCCCTTTCCCTGACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTG
AGAACAAGGAAGGCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAT
AAGAAATGTATTAACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGT
AAGTCTTTCTCCTTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGC
AACTCGACTGAGCGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTC
GAGCTGCTTTTAGCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACG
TTCAATGAGATGATGTCGCTTCAGCAACTCGACTTACAGTCTTTT
Found at i:494518 original size:32 final size:32
Alignment explanation
Indices: 494441--494518 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
494431 CTTTACTATA
**
494441 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
**
494473 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
494505 GC-TACGCAACGTCT
1 GCGTA-GCAACGTCT
494519 GGCTTCGTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 2 0.05
32 41 0.95
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (32 bp):
GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 493941 -- 494440
GTTGCTTCGCGCCCTTCTTAGCTCTCTTCTTCTAGTCTCGCTCGTTGCTTCTCGCCCTTAGCCGC
TCTCTTCTTCCCTTATTCCTTCTCTTCCCGCTTCAGTTGATGGAAAAGCATTAAATGGGGCAAGG
AAGGGGAAAATCGCTTATACCGGAAGCGACATCATCTAATAGAACTATTCCACAAGGGAGTTTAC
TTGCTTATATATAAGGAAGCGACATCTTCGCGCGACGACTGTCTTTTTGATTGGTACCGCAGTCG
CCCTTATCAAATATGCCTATTCTCATTGAACTATTCTATTATTCGAATTTCACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 494519 -- 495018
GGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGCGCCCTTTCCCTG
ACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTGAGAACAAGGAAG
GCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAATAAGAAATGTATT
AACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGTAAGTCTTTCTCC
TTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGCAACTCGACTGAG
CGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTCGAGCTGCTTTTA
GCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACGTTCAATGAGATG
ATGTCGCTTCAGCAACTCGACTTACAGTCTTTTTGCTTTTCGCTC
Found at i:495729 original size:15 final size:15
Alignment explanation
Indices: 495709--495737 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
495699 AATATCATAG
495709 TTCTAATACGCTTCC
1 TTCTAATACGCTTCC
495724 TTCTAATACGCTTC
1 TTCTAATACGCTTC
495738 TAATACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.31, G:0.07, T:0.41
Consensus pattern (15 bp):
TTCTAATACGCTTCC
Left flanking sequence: Indices 495209 -- 495708
CCCTTTTCGTTCAATGAGAATAGGAGAAAGGGGAAATGAGAACTGCTACGCTCCAACCCTTCCAA
CAAGTGTAGTTGCGTAGCTCCAACCCTTGTTCTTCTTTCCGCGCCTCTCTTTCCCTCTTCATACC
TGATTCGAACTGCGTAGCAACAAATTGAACTATTCTATGAGAACAGCGTAGCGGAAACCCTTACA
GTCAAGTTGCTTCTACGCCTCTCTTTCCTTACTATAAACTTAGCAACACAGGAAGGCAAGTTCTT
TATAATACGATTAATAATAATCAATGAGAACTGCTACGCTTATCATACTTAAAGCTTTCCACTCC
TCTCGCATTCGCTCGAGTTTCTTTCCACTCCTTACAGTCTCGTTCAAGCTGCTTCGCTTCTATTA
TTATAGGAAGGAGAGGGGAATAAGAAGAACTGCTACTAATAGTTTTCTTAGAACAGCGTAGCAAC
TAATTGAACTATTCTATGAGAACAGCTACGCAACAAATATCATAG
Right flanking sequence: Indices 495738 -- 496237
TAATACTTAAAGCTTGGAACTCCTTACAGTCTCGTTGCTTTCCACTCCTTACAGTCTCTAAGGAA
GGCAAGTGATTTATAATACGATTAAGAATATGAAATGAAAGTGAAATGAGAACTGCTACGCAACG
AGACAGAGAGAATAGGAGAAAGGGGAACTGCTACGCTTAGAATTGAATAGTTCAAACTGCGTAGC
TCCTCTCACTTCATTTTAAAGCTTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCA
CTCCTCTCACATTCGAATAGTGAAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAAC
TCTCTTTCCTTAGCAGTCTCGTTGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCA
ATTCGAACAAGGCTTGGAACTCCTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAA
CTGCTACGCTGTTCTTCTTTCCACTCCTTACAGTCTCGTTGCTTG
Found at i:496484 original size:26 final size:25
Alignment explanation
Indices: 496455--496510 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
496445 CTAAGTTTAT
* *
496455 AGTCTCGTTGCTTTCCACTCCTTAGC
1 AGTCTCGTTGCTTGCAACTCCTTA-C
*
496481 AGTCTCGTTGCTTGGAACTCCTTAC
1 AGTCTCGTTGCTTGCAACTCCTTAC
496506 AGTCT
1 AGTCT
496511 TTAGTAGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (25 bp):
AGTCTCGTTGCTTGCAACTCCTTAC
Left flanking sequence: Indices 495955 -- 496454
TTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCACTCCTCTCACATTCGAATAGTG
AAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAACTCTCTTTCCTTAGCAGTCTCGT
TGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCAATTCGAACAAGGCTTGGAACTC
CTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAACTGCTACGCTGTTCTTCTTTCC
ACTCCTTACAGTCTCGTTGCTTGGAACTCCTGTAAGTCAAGTGTCTTTTCGCTCCTGTTCTTCAT
TTTCCCTTAGCAACACAGGAAGGCAAGTGATTTATAATACGATTAAGAATATTCAATTCCAGTTC
ATAGGCCTTAACAAAACTGAAATGAGAATAGGAGAATAGTGAAACTAATAGAATCGTTCAATTCG
AATAGGAGAATAGTTCCATTCGAACAGCTACGCTTCTAAGTTTAT
Right flanking sequence: Indices 496511 -- 497010
TTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAAGAGTAGGAGAAAGCAAGAAAG
AACTATCTGACTTCGCGGATAAGAAATCAAGGACTTGTCGGTAGATCAGCTAGCTCGCGCTCTAG
TCTTTCATTGATCTTTTCTGCCCGGACCATCGCTTTAGCGCCTTTAGCAACTACTATAGCCCAGC
CCGGACCATCGCTTATACCGGAAGCGACATCATCAAATATGCCTATTCGAATTTCACTATTCTAT
TATTCTAATGGAACTATTCTATTAGTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTT
ACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAA
TTGAACTATGATATTAGAAGCGTAGCTGTTCTTCTTTCGCCCCCTCTCACATTCGTTCGAGTGGC
TCCGCTCCTCTCTCTAAATAGAAAGACTCAACGAGGAGTATGAGA
Found at i:497852 original size:22 final size:22
Alignment explanation
Indices: 497827--497916 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
497817 CTTTTATGCC
497827 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
497849 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
**
497871 TATGAGAATTGAACTATTCTAT
1 TATGAGAATTGAACTATGATAT
* *
497893 TATTCA-AATGGAACTATGATAT
1 TA-TGAGAATTGAACTATGATAT
497915 TA
1 TA
497917 GTTGCGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 59 0.97
23 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (22 bp):
TATGAGAATTGAACTATGATAT
Left flanking sequence: Indices 497327 -- 497826
TTAATTAGAACTGCGTAGCAGTTCTAAGTTTATAGTCAAGTTGCTTTTCGCGCTTTTCCTTTTAA
AGCTTCTTCCACGCCTCTCACATTCGTTCGAGCTACCTTCGTTCCGTCATTAATGAAAAGAAAAG
GGAGTTTACTTGCTTTTATGAAATGAAAAGGGATGCGCTAAGGCAAGCTACGCTGTTCTTCTTCC
GCTTAGAGTAAGGAAATAAACTCCCTTCCTCTAACAAGTAAGTCTTTCTCCTTGCGGAATAGTTC
AATTCGAATAGGCTTTCCACTCCTTTCCTTGCAGTCAAGCAGCTTCGCGCCTTTCGCCCCCTCTC
TCTAAGCTAAACGCCCCTCTCCTGTAAGTCTTTTTGCTTTCAGCTTCTTTCCCTGCGGTCAAGTG
ACTTCGTTCCTCTCCAAACTTTATAGTCAAGCAAGCGGCTTGGAACTTCCTTCTTTATAGTAAAG
GAGAGGAGTGGAAAGCCTATTCTAAGCGACATCATCTTTTATGCC
Right flanking sequence: Indices 497917 -- 498416
GTTGCGTAGCAGTTCTAAGAAAACTCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTT
CCATTTAAAGCGATCTTCTTCTAAGCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTAT
AAGGAATTGATGTAGCAGTTAAAGAATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCT
ACTCCTTTTCCCTGAACTCGTAGCTTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCC
AAGTCCGATCGATCTTAAAGCTACGAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCC
TTATAGTCTATCGAGTTGCTTTTAGCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCT
CTCCTGTAAGTCGAGTCGCTTTTCAGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAA
CAAGTATAGAAGCGTAGCTGTTTTAAAGAGATACCCGTTCGTGAA
Found at i:498486 original size:20 final size:21
Alignment explanation
Indices: 498441--498487 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
498431 CACTCACTAG
*
498441 ATAGAAGCGTAGCTGTTTTAA
1 ATAGAAGCGTAGCTGTTTCAA
*
498462 ATAGAAGCGTAGCTG-TTCGA
1 ATAGAAGCGTAGCTGTTTCAA
498482 ATAGAA
1 ATAGAA
498488 TAGTCTCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.28
Consensus pattern (21 bp):
ATAGAAGCGTAGCTGTTTCAA
Left flanking sequence: Indices 497941 -- 498440
TCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTTCCATTTAAAGCGATCTTCTTCTAA
GCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTATAAGGAATTGATGTAGCAGTTAAAG
AATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCTACTCCTTTTCCCTGAACTCGTAGC
TTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCCAAGTCCGATCGATCTTAAAGCTAC
GAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCCTTATAGTCTATCGAGTTGCTTTTA
GCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCTCTCCTGTAAGTCGAGTCGCTTTTC
AGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAACAAGTATAGAAGCGTAGCTGTTTT
AAAGAGATACCCGTTCGTGAACCTTACCTAAGGTTCACTCACTAG
Right flanking sequence: Indices 498488 -- 498987
TAGTCTCGTTGCTTTTCGCCTCTCGCATTCGTTATTAGTTGCTACGCTGTTCTTCTTTCACTCCT
CTCTTCCCCTAAGGCCATTTGCGGCGCATTTAACGCGGCGACAGCCCCCCGCATACCCAATATAT
CATGAGAGTGGCGGAACGGGGCTTAAAAGCGCCGGAAATGGGCTGTTAGCTTTCCAACCTTATAA
TCAAGCAAGTGAGGAAGGGCGTTCCATGCCTATTCGAATAGAACTATTCTAAGCGTAGCAGTTCT
AAGAAAACTCTTACTTACAGGAGAGGCGCTTTAGCCGCTCGACCGTAGGGAGAGGAGTGAAAGCC
ATTTGAGTTTTCGCTTGCTTGATTATTTGGAAAGGGGCGGAAATACGGTTGTTTACTTGCTTACT
TTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTAGCTAGA
CCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGC
Found at i:499410 original size:27 final size:27
Alignment explanation
Indices: 499372--499447 Score: 152
Period size: 27 Copynumber: 2.8 Consensus size: 27
499362 AACTGCTACG
499372 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
499399 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
499426 CTCCTCTTCCTCTCTGTTCTTC
1 CTCCTCTTCCTCTCTGTTCTTC
499448 AACACTCCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.03, C:0.42, G:0.04, T:0.51
Consensus pattern (27 bp):
CTCCTCTTCCTCTCTGTTCTTCTTTCA
Left flanking sequence: Indices 498872 -- 499371
CTTACTTTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTA
GCTAGACCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGCTGACTGAATCCATA
AACCGTCAAAGTCACCGTCACTGGTACTTTTGTGACTCTATTCTATAGGTAGGTATAGGTATTGG
TGGAGCTTGCGTAATGTAGTTGTAGTTAAGACGAAAGGGGAAGGAAGCTCGACCGGGTAGACGTA
ATGAAGCTCGACCGGGGGCGAAGCTGTTTGAACGAGAACGAATGTGAGGGGCGAAGCTACTCGAC
TGTAGGGAGAGGGGCGCTGTTCTAAGAAAACTCTTACTATAAGGAGAGGCGCGAAGACAAGCCGC
GAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCGGCGGCAA
CCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACG
Right flanking sequence: Indices 499448 -- 499947
AACACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTC
AAGCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCT
TGAAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACC
AGCCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATG
CCTATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCCTATTCGAATTGAACTATT
CTATTATTCGAATTTCACTATGATATTATGAGAATTGAACTATTCTATTAGTTGCGTAGCAGTTC
TAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTC
ATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAA
Found at i:499780 original size:22 final size:22
Alignment explanation
Indices: 499755--499822 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
499745 GATATTAGCC
499755 TATTCGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
** **
499777 TATTCGAATTTCACTATGATAT
1 TATTCGAATTGAACTATTCTAT
**
499799 TATGAGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
499821 TA
1 TA
499823 GTTGCGTAGC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (22 bp):
TATTCGAATTGAACTATTCTAT
Left flanking sequence: Indices 499255 -- 499754
AAGCCGCGAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCG
GCGGCAACCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACGCTCCTCTTCCTCT
CTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCAA
CACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTCAA
GCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCTTG
AAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACCAG
CCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATGCC
TATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCC
Right flanking sequence: Indices 499823 -- 500322
GTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTA
GTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAAGGCAA
GAAGTAAGGCCATTTGCGGCACATTTAACACGGCTTAAACCTCCCTCATTACCAATCTCACATTA
GAGTTCGGAAAGGGGGCTTAAAAGCATCGCAAATTGGGTGTTAGCTTTCCAACGAGGGTGGATTG
AATGAAGCGACATCATCAAATATGCCTATGAGAATGGAACTATGATATTAGTTGTTCTCAGTCTT
CAATTTGCCCTTTCTTGCTTAGTAAGGCGCAACGGCTTTCGCGCAGCTGCTACGCAACTAATTGA
ACTATGATATTAGTTCAAGTCAAGGTTGTAGAAAGAAAGTCTACCGGACGTGGGAAAACTGACTT
CTAGTGAGGGAGGGCGAGCTTTAATTGAAGTAGGAGCGTTTAGCC
Found at i:502322 original size:34 final size:34
Alignment explanation
Indices: 502278--502353 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
502268 GCTGAAAAGA
502278 AGAACAGCGTAGCAACAAAT-TGAATAGTTCAATG
1 AGAACAGCGTAGCAACAAATAT-AATAGTTCAATG
* * *
502312 AGAACTGCGTAGCAACAAATATCATAGTTCAATT
1 AGAACAGCGTAGCAACAAATATAATAGTTCAATG
*
502346 CGAACAGC
1 AGAACAGC
502354 TACGCTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (34 bp):
AGAACAGCGTAGCAACAAATATAATAGTTCAATG
Left flanking sequence: Indices 501778 -- 502277
CAAGAAGTAAGGAAATGAGACGAGTGAAAGCAACTCGCCTTAGAACTGCTACGCTTAGAATTGTA
CTTTCCAATATGCCTTGTTCTAATATCATAGTGAAATGAGAATAGGCTAATTGCGTAAAGGAAGG
AGATGAAAGAAGCTCGACTAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTAC
TCTAACAAGTCAGTCTTTCTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTA
AAAGCGAGCAGTCTGGAACTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATT
GATTAAGAGAAGAAAAGAGGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTT
CTTTTGCTTGTTTTCGCTACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGT
TCAATAACTATACTATACTATAAGGAAAGAAAGGAGCTGAAAAGA
Right flanking sequence: Indices 502354 -- 502853
TACGCTTATAATTGAATAGTTCCATTAGAATAATAGAATAGTGAAATTCGAACTGCTACGCAACT
CGCCTTAGAACAGCTACGCTTAGAATAGTTCTATTTAAATAATTGAACTATTCTATTATAATATA
AGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTAATCTCGGGTGCCCGGACATGTCGTTA
CAGAGCACAGGACAACAATGAGACGACTAGCAACTACTATTATAAGGCAAGCTGTTGCTAGCTGT
TGCCTAGTTGTTTGTTGTCCTGTGCTCTAGTAGTTGTTACCACCTGTCCGGGCTCTTGCTAAGCT
GTTGCTAAGGCGGGTGGACGAATTTTCTAACAATTGCTTTAGAGATCCGACTTCTTTGATGCACC
CGTACGTGGTTAATCGCCATTGGGACGTTCGTCGTGATGATCCCACATTGATTCGTTTTGGGTTA
ATGTGGAAACTTCACGACTTAATTCAAAGTTGGTCTCTTGATCCT
Found at i:504348 original size:32 final size:32
Alignment explanation
Indices: 504307--504370 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
504297 TGGCCATCCG
504307 CTTTTCCTTTAGTAGTTTTCTTACTCTCTCCA
1 CTTTTCCTTTAGTAGTTTTCTTACTCTCTCCA
504339 CTTTTCCTTTAGTAGTTTTCTTACTCTCTCCA
1 CTTTTCCTTTAGTAGTTTTCTTACTCTCTCCA
504371 TCTGTCCTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.12, C:0.28, G:0.06, T:0.53
Consensus pattern (32 bp):
CTTTTCCTTTAGTAGTTTTCTTACTCTCTCCA
Left flanking sequence: Indices 503807 -- 504306
TTAAACATGAAATTTCCCATCCATTTGCACGAGATGAGTTCAAACCCAAGGTGCGTAGCGGTTCA
GAAAGAGAGAAGCTTAGAGTGGACCATAGATCTATAGCCTAGAGAGAGCGGGTTGCCAGTTATGC
TCGCTGGTTCCGAGTGATCATACATAGGATCTGGGAAAGAGTAAGATAGCCGTTATACTCTTTCT
TTATCAAAGATATCGATATCGGACGAATCCCCACCGGGAAATCAACCGAATCAATAAATGATAGA
GAAATTGGAGGACAATTTACCTCATGCGGGAAAAAGCTCGCCTAAGACTGATAAAGGGGAGGTCA
GATCTAGGGCTTTGCCTAATTCCCGTAGTAGCCTTTTTTAGTGAGGTGCAATGCTTTCGATTAGC
TTTCGAAGCCAGTCTTTCAGGTCTATTTCCATCCCCTTTTTAGTCGGGAAGTTAAAGTGAGGGGT
CTCTTCGTCTTTTCCTATCGTCTTATTCGGATGAGTGGCCATCCG
Right flanking sequence: Indices 504371 -- 504870
TCTGTCCTTCCATTACTTCCTTCTATCAGGTCAAGCCTTCCCGCGGGCCTCTAGTCTTCGATCCT
TTCTTCTTTTCTTTAAGAGTAGCTCAGGGAAATAAAGACCAGGCCTCAAGGCGATGAATATACAG
AAAGCAATTGCCATAATCCACCTTTCGATAGGCTTCCTCTTTCACCCGGGGGAAGGACAGGCCTA
TTCGTGTTTATGGGCACCTCGCTTAATGGTTCCGATCTACCCAGTGCTTAAATAAAGCGGAATCC
TATTTAAAGGAACTTCAACTAAGAAAGAAGAAGAATAAGAAGAATTGCTTAAGTAAGGTAGTCGC
TTCTTTTTTTCGGTATACCGCTCTGCTCGCAGAGCGAATGAACATAAATCTTTCCGAATATCATG
AATATCCTTCGCCCCTTATCTCCTCATCTTCCTATTTATAAGCCACAGCTTACTTCGACGTTTTC
AATTTCCCATAGAATCTCCGGAGCTTTCCTAGCCACTATAGTTTT
Found at i:504379 original size:32 final size:32
Alignment explanation
Indices: 504311--504379 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
504301 CATCCGCTTT
*
504311 TCCTTTAGTAGTTTTCTTACTCTCTCCACTTT
1 TCCTTTAGTAGTTTTCTTACTCTCTCCACTTG
504343 TCCTTTAGTAGTTTTCTTACTCTCTCCA-TCTG
1 TCCTTTAGTAGTTTTCTTACTCTCTCCACT-TG
504375 TCCTT
1 TCCTT
504380 CCATTACTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 1 0.03
32 34 0.97
ACGTcount: A:0.12, C:0.29, G:0.07, T:0.52
Consensus pattern (32 bp):
TCCTTTAGTAGTTTTCTTACTCTCTCCACTTG
Left flanking sequence: Indices 503811 -- 504310
ACATGAAATTTCCCATCCATTTGCACGAGATGAGTTCAAACCCAAGGTGCGTAGCGGTTCAGAAA
GAGAGAAGCTTAGAGTGGACCATAGATCTATAGCCTAGAGAGAGCGGGTTGCCAGTTATGCTCGC
TGGTTCCGAGTGATCATACATAGGATCTGGGAAAGAGTAAGATAGCCGTTATACTCTTTCTTTAT
CAAAGATATCGATATCGGACGAATCCCCACCGGGAAATCAACCGAATCAATAAATGATAGAGAAA
TTGGAGGACAATTTACCTCATGCGGGAAAAAGCTCGCCTAAGACTGATAAAGGGGAGGTCAGATC
TAGGGCTTTGCCTAATTCCCGTAGTAGCCTTTTTTAGTGAGGTGCAATGCTTTCGATTAGCTTTC
GAAGCCAGTCTTTCAGGTCTATTTCCATCCCCTTTTTAGTCGGGAAGTTAAAGTGAGGGGTCTCT
TCGTCTTTTCCTATCGTCTTATTCGGATGAGTGGCCATCCGCTTT
Right flanking sequence: Indices 504380 -- 504879
CCATTACTTCCTTCTATCAGGTCAAGCCTTCCCGCGGGCCTCTAGTCTTCGATCCTTTCTTCTTT
TCTTTAAGAGTAGCTCAGGGAAATAAAGACCAGGCCTCAAGGCGATGAATATACAGAAAGCAATT
GCCATAATCCACCTTTCGATAGGCTTCCTCTTTCACCCGGGGGAAGGACAGGCCTATTCGTGTTT
ATGGGCACCTCGCTTAATGGTTCCGATCTACCCAGTGCTTAAATAAAGCGGAATCCTATTTAAAG
GAACTTCAACTAAGAAAGAAGAAGAATAAGAAGAATTGCTTAAGTAAGGTAGTCGCTTCTTTTTT
TCGGTATACCGCTCTGCTCGCAGAGCGAATGAACATAAATCTTTCCGAATATCATGAATATCCTT
CGCCCCTTATCTCCTCATCTTCCTATTTATAAGCCACAGCTTACTTCGACGTTTTCAATTTCCCA
TAGAATCTCCGGAGCTTTCCTAGCCACTATAGTTTTGTTTTTTTA
Found at i:508836 original size:24 final size:24
Alignment explanation
Indices: 508808--508910 Score: 140
Period size: 24 Copynumber: 4.4 Consensus size: 24
508798 ACAAAAAAGA
*
508808 TTTGTCTAAGCCACTTCGTTTCTT
1 TTTGTCCAAGCCACTTCGTTTCTT
*
508832 TTTGTCTAAGCCACTTCGTTTCTT
1 TTTGTCCAAGCCACTTCGTTTCTT
* *
508856 TTTGTCCAAGTCACTTCTTTTCTT
1 TTTGTCCAAGCCACTTCGTTTCTT
*
508880 TTTGTCCAAGTCACTTC--TT-TT
1 TTTGTCCAAGCCACTTCGTTTCTT
508901 TTTGTCCAAG
1 TTTGTCCAAG
508911 TTGCTTTTCT
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
21 12 0.16
22 2 0.03
24 62 0.82
ACGTcount: A:0.14, C:0.24, G:0.12, T:0.50
Consensus pattern (24 bp):
TTTGTCCAAGCCACTTCGTTTCTT
Left flanking sequence: Indices 508308 -- 508807
GATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAC
TCAATATAGATTGATCCGAAATCTGATTCAAATCCAATATAGTACCTATGGGTACATAAGAAATG
TATTGAATCGATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGAT
CAAATAGGAAAGGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAATATTTTTC
GAATTTGAAAAAGAGTCAGAAGAAATGGTTCGAGCCTCTTATTTTTCTTTCTCGAACCGAGAGAT
CCATGAATCGGGATCCTGATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAA
CATTTGGAACAGTCCGTTTCGGAGCAGAAGAGCCGTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 508911 -- 509410
TTGCTTTTCTTTTTGTCTAACTCACTTCCTTTTTTCTGTGTGAGTTTCGGAAATATCCCCATTCA
TAGGTCCGAGATCTACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAG
AATCAATAGGTCTTCAAATTGTTCATTTGAAAAAATTGAAACCCGATCATGATACTTTACTTCCC
AAAAATAGAAATTCTTGATCAATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAG
TGGATGATTGACTCATTCCATACTAGAAATAATCGCAGGAAATCCTTTGATAACCCGGATTCCTA
TTTCTCAATGATATTCCACGATCAAGACAATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTT
CATTGATATCTTCTTTTTATAAAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTCTGC
TTCTATTGGAACACAAGATTCCCCTTTTCTGTGGAGTATCAATAA
Found at i:508879 original size:48 final size:45
Alignment explanation
Indices: 508808--508945 Score: 149
Period size: 48 Copynumber: 3.1 Consensus size: 45
508798 ACAAAAAAGA
* * *
508808 TTTGTCTAAGCCACTTCGTTTCTTTTTGTCTAAGCCACTTCGTTTCTT
1 TTTGTCCAAGTCACTTCTTTTCTTTTTGTCTAAGCCACTTC--TT-TT
* *
508856 TTTGTCCAAGTCACTTCTTTTCTTTTTGTCCAAGTCACTTCTTTT
1 TTTGTCCAAGTCACTTCTTTTCTTTTTGTCTAAGCCACTTCTTTT
* *
508901 TTTGTCCAAGT---TGCTTTTCTTTTTGTCTAA-CTCACTTCCTTT
1 TTTGTCCAAGTCACTTCTTTTCTTTTTGTCTAAGC-CACTTCTTTT
508943 TTT
1 TTT
508946 CTGTGTGAGT
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
42 29 0.36
45 13 0.16
46 2 0.03
48 36 0.45
ACGTcount: A:0.12, C:0.24, G:0.10, T:0.54
Consensus pattern (45 bp):
TTTGTCCAAGTCACTTCTTTTCTTTTTGTCTAAGCCACTTCTTTT
Left flanking sequence: Indices 508308 -- 508807
GATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAC
TCAATATAGATTGATCCGAAATCTGATTCAAATCCAATATAGTACCTATGGGTACATAAGAAATG
TATTGAATCGATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGAT
CAAATAGGAAAGGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAATATTTTTC
GAATTTGAAAAAGAGTCAGAAGAAATGGTTCGAGCCTCTTATTTTTCTTTCTCGAACCGAGAGAT
CCATGAATCGGGATCCTGATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAA
CATTTGGAACAGTCCGTTTCGGAGCAGAAGAGCCGTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 508946 -- 509445
CTGTGTGAGTTTCGGAAATATCCCCATTCATAGGTCCGAGATCTACATCTATGAATTGAAAGGTC
CGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATTGTTCATTTGAAAAAA
TTGAAACCCGATCATGATACTTTACTTCCCAAAAATAGAAATTCTTGATCAATGGAGGAACAATA
TCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAATAATCG
CAGGAAATCCTTTGATAACCCGGATTCCTATTTCTCAATGATATTCCACGATCAAGACAATTGGC
TGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAAATCGACTT
CGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGGAACACAAGATTCCCCTTTTCTGTGGA
GTATCAATAATTCTGATTTTACGTATGGACAATTCCTCAATATCT
Found at i:508904 original size:21 final size:22
Alignment explanation
Indices: 508808--508938 Score: 122
Period size: 24 Copynumber: 5.8 Consensus size: 22
508798 ACAAAAAAGA
* *
508808 TTTGTCTAAGCCACTTCGTTTCTT
1 TTTGTCCAAGTCACTTC--TTCTT
* *
508832 TTTGTCTAAGCCACTTCGTTTCTT
1 TTTGTCCAAGTCACTTC--TTCTT
508856 TTTGTCCAAGTCACTTCTTTTCTT
1 TTTGTCCAAGTCACTTC--TTCTT
508880 TTTGTCCAAGTCACTTCTT-TT
1 TTTGTCCAAGTCACTTCTTCTT
**
508901 TTTGTCCAAGTTGCTT-TTCTT
1 TTTGTCCAAGTCACTTCTTCTT
* *
508922 TTTGTCTAACTCACTTC
1 TTTGTCCAAGTCACTTC
508939 CTTTTTTCTG
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
20 2 0.02
21 30 0.31
22 2 0.02
24 62 0.65
ACGTcount: A:0.13, C:0.24, G:0.11, T:0.52
Consensus pattern (22 bp):
TTTGTCCAAGTCACTTCTTCTT
Left flanking sequence: Indices 508308 -- 508807
GATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAC
TCAATATAGATTGATCCGAAATCTGATTCAAATCCAATATAGTACCTATGGGTACATAAGAAATG
TATTGAATCGATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGAT
CAAATAGGAAAGGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAATATTTTTC
GAATTTGAAAAAGAGTCAGAAGAAATGGTTCGAGCCTCTTATTTTTCTTTCTCGAACCGAGAGAT
CCATGAATCGGGATCCTGATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAA
CATTTGGAACAGTCCGTTTCGGAGCAGAAGAGCCGTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 508939 -- 509438
CTTTTTTCTGTGTGAGTTTCGGAAATATCCCCATTCATAGGTCCGAGATCTACATCTATGAATTG
AAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATTGTTCATTT
GAAAAAATTGAAACCCGATCATGATACTTTACTTCCCAAAAATAGAAATTCTTGATCAATGGAGG
AACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAA
ATAATCGCAGGAAATCCTTTGATAACCCGGATTCCTATTTCTCAATGATATTCCACGATCAAGAC
AATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAAA
TCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGGAACACAAGATTCCCCTTTT
CTGTGGAGTATCAATAATTCTGATTTTACGTATGGACAATTCCTC
Found at i:508926 original size:42 final size:43
Alignment explanation
Indices: 508826--508945 Score: 143
Period size: 42 Copynumber: 2.7 Consensus size: 43
508816 AGCCACTTCG
* *
508826 TTTCTTTTTGTCTAAGCCACTTCGTTTCTTTTTGTCCAAGTCACTTCT
1 TTTCTTTTTGTCTAAGTCACTTC--TT-TTTTTGTCCAAGT--CTGCT
*
508874 TTTCTTTTTGTCCAAGTCACTTCTTTTTTTGTCCAAGT-TGCT
1 TTTCTTTTTGTCTAAGTCACTTCTTTTTTTGTCCAAGTCTGCT
* *
508916 TTTCTTTTTGTCTAACTCACTTCCTTTTTT
1 TTTCTTTTTGTCTAAGTCACTTCTTTTTTT
508946 CTGTGTGAGT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
42 30 0.45
45 13 0.20
46 2 0.03
48 21 0.32
ACGTcount: A:0.12, C:0.23, G:0.09, T:0.56
Consensus pattern (43 bp):
TTTCTTTTTGTCTAAGTCACTTCTTTTTTTGTCCAAGTCTGCT
Left flanking sequence: Indices 508326 -- 508825
CCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCACTCAATATAGATTGATCCG
AAATCTGATTCAAATCCAATATAGTACCTATGGGTACATAAGAAATGTATTGAATCGATTCTTTT
TAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAAGGATACT
CTGAATCATAGAACTATAATGAAATATACGATCAACCAATATTTTTCGAATTTGAAAAAGAGTCA
GAAGAAATGGTTCGAGCCTCTTATTTTTCTTTCTCGAACCGAGAGATCCATGAATCGGGATCCTG
ATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAACATTTGGAACAGTCCGTT
TCGGAGCAGAAGAGCCGTTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGA
TTGGTCTGAGGTTATCGACAAAAAAGATTTGTCTAAGCCACTTCG
Right flanking sequence: Indices 508946 -- 509445
CTGTGTGAGTTTCGGAAATATCCCCATTCATAGGTCCGAGATCTACATCTATGAATTGAAAGGTC
CGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATTGTTCATTTGAAAAAA
TTGAAACCCGATCATGATACTTTACTTCCCAAAAATAGAAATTCTTGATCAATGGAGGAACAATA
TCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAATAATCG
CAGGAAATCCTTTGATAACCCGGATTCCTATTTCTCAATGATATTCCACGATCAAGACAATTGGC
TGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAAATCGACTT
CGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGGAACACAAGATTCCCCTTTTCTGTGGA
GTATCAATAATTCTGATTTTACGTATGGACAATTCCTCAATATCT
Found at i:517732 original size:21 final size:21
Alignment explanation
Indices: 517708--517749 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
517698 TAACATAGTA
*
517708 GTACCAACATTTCCGAATAAC
1 GTACCAACATTTCCAAATAAC
*
517729 GTACCAGCATTTCCAAATAAC
1 GTACCAACATTTCCAAATAAC
517750 ATAGATGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.24
Consensus pattern (21 bp):
GTACCAACATTTCCAAATAAC
Left flanking sequence: Indices 517208 -- 517707
CACCATTTCTCTGTTCAGCAGGATCTGAGGTACTGTTGCGGTTTTCGCCGCGGCGGTCGTCTTCT
GCTGATGCTGCTGAATTTTCGGCTAAAACATCTAGATCAAAATGGGTCCATCCCGAGCCTCTTGA
AGAACCACCACTGCCCCCCATGTTATCGCCGTTTGAGTTCGATCCTGCTGACCCAGATCTTCCAA
AATGCTTCATTAGATCCAAATCTTGGAAGAACCCGCACCACCAAAGATTTAAAGTGAAGAAAATT
AAACTAGATAATGAAGAATTTAAGCCGAATCGGCTTAACTGGGAACATCCAATCCGCATTCCACT
TTTAAGAAGAAATTGGTGGAAAAAATCCATATGACCGGATAGAGAACAAATCAGATAAATCAAAG
CAAAAATGAAAGAGACGAAACCCATTTTTATCAATATTGGAATAGAATTTCTTTGATTCTTGGCC
CTACAAGATGTCCTAAAATACCAATACCTACAAGATAACATAGTA
Right flanking sequence: Indices 517750 -- 518249
ATAGATGTAGACTTAGAATTTTCCCTTCGCCAGGGTAAGCGTTTCAAATTTGTGATCATGATTTA
AGGTTTTTTTCTTTCGTGAATCCTTTAAGTTCTTTTGAATCCTTTAAGTTGTTTAAGGAAAAAGG
GCTCAAAAAACAGAAGTCAGTTCATACGATTAGACAACAAAGAAAGGTCGACCTTTCTTTACAAA
GCTTAGATTTTGCCCGAAAATCACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTC
TGAGCCAGGATCAAACTCTTCTTTTGACTATGATTGGGCCCTGCAGTGGTAGAACCTGGTGAACC
GGGCGTACTATTTCCCAACCTTCTCTTCACTTTTCTTCTCTTATGATTTTTGCTTTTTGCTACTT
TCTTTTTGATAGTATTGGTCTCGTTTAGAGTATCAGTCTAGTCACTCAACTAATCCACTCGTGGA
GTGCGTTTGGTATAGTAGTAGTCTGGTAGTTGAGACTTCGCCCCT
Found at i:519379 original size:17 final size:17
Alignment explanation
Indices: 519357--519390 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
519347 AATCGAGGAG
*
519357 AGCAAGAAAATGGATGC
1 AGCAAGAAAACGGATGC
519374 AGCAAGAAAACGGATGC
1 AGCAAGAAAACGGATGC
519391 GCGTGACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.15, G:0.29, T:0.09
Consensus pattern (17 bp):
AGCAAGAAAACGGATGC
Left flanking sequence: Indices 518857 -- 519356
CTCCTTAAGGCACCGTGTTGAGTAGGGATTTGAATAGAAACTCGATTTTGGGGCTCAATGTTGCT
GGACTCTACTCCTCTCCCCGCGCTCTCTCCTTCTAGCAGTTGCTACACTCGGCCTCTCCTAGGGA
TTCGACAAAGAATAGTGGTAATCTAGAACTAGAAGAAGGGTTAGACCGGCCGCTTAATAGGTCTC
AACAGGTCTCAAGAGGGATTAAGAGATTAGTAGAGCCCCAAGCACACCCTGGGCTGCGGCATCCG
ACTTCTCCAACCGTTGCGAGATTCCTGACTTCAGACGATCTGATAGCGTACGTAGATTCTTAAGA
CTTCCCTGGAAGATTCTTCTCGCCCAGGCTTTGACTTTCTCGTGCAATCCAAAATTCGACGTACT
ATCGAGTTGCTAAACTCCGAAAATTTTGGATCACTCATTCGGAAGAGGTCATTTCGAAGACCTGC
TTGGAAAGTAATTCCTTAAGTAAACATCTTTTGTCAATCGAGGAG
Right flanking sequence: Indices 519391 -- 519890
GCGTGACTAACGCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTTGCGCAACGGCTT
TCGCGCTAGTGCGCTCATCCGCTGCTTGTTCATGTCAAAAAGCCGTCTTTTAAGCACGACTGGAA
GATTTCTAAGTGAACCCAATGTTATGCTTAACACATGCAATTCGTCATTGAGATACTAGGCCAAC
TCAAAGAGGGAAATGCAAGTAGCAGTTCTAATAGAAGCGTAGCTGTTCTAAGAAAGAAGGAGAGT
CGCTTTCAAGCTTGGAACTCCTTTCCCTTCGTTCGAGTGGCTTCGCACCTTTCCCTTCGTTCGAG
TGGCTTCGCAGTTCTAAGTTTTAAGGAGAGTTGACCGCGGCGAGTAGCTGTTCTCCTTAACAGTC
AAGTCTCGTTGCTTCGCTGTTCGAATTTCACTATTCTAACTGGTTGGCAGAGACCCTATTCGATC
GTATGGACCGGAACGACTCTCCTTCCTTAAAGTATAGAAGCGTAT
Found at i:519463 original size:42 final size:42
Alignment explanation
Indices: 519402--519485 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
519392 CGTGACTAAC
519402 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
*
519444 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
519486 CATGTCAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.11, C:0.33, G:0.27, T:0.29
Consensus pattern (42 bp):
GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
Left flanking sequence: Indices 518902 -- 519401
TTTTGGGGCTCAATGTTGCTGGACTCTACTCCTCTCCCCGCGCTCTCTCCTTCTAGCAGTTGCTA
CACTCGGCCTCTCCTAGGGATTCGACAAAGAATAGTGGTAATCTAGAACTAGAAGAAGGGTTAGA
CCGGCCGCTTAATAGGTCTCAACAGGTCTCAAGAGGGATTAAGAGATTAGTAGAGCCCCAAGCAC
ACCCTGGGCTGCGGCATCCGACTTCTCCAACCGTTGCGAGATTCCTGACTTCAGACGATCTGATA
GCGTACGTAGATTCTTAAGACTTCCCTGGAAGATTCTTCTCGCCCAGGCTTTGACTTTCTCGTGC
AATCCAAAATTCGACGTACTATCGAGTTGCTAAACTCCGAAAATTTTGGATCACTCATTCGGAAG
AGGTCATTTCGAAGACCTGCTTGGAAAGTAATTCCTTAAGTAAACATCTTTTGTCAATCGAGGAG
AGCAAGAAAATGGATGCAGCAAGAAAACGGATGCGCGTGACTAAC
Right flanking sequence: Indices 519486 -- 519985
CATGTCAAAAAGCCGTCTTTTAAGCACGACTGGAAGATTTCTAAGTGAACCCAATGTTATGCTTA
ACACATGCAATTCGTCATTGAGATACTAGGCCAACTCAAAGAGGGAAATGCAAGTAGCAGTTCTA
ATAGAAGCGTAGCTGTTCTAAGAAAGAAGGAGAGTCGCTTTCAAGCTTGGAACTCCTTTCCCTTC
GTTCGAGTGGCTTCGCACCTTTCCCTTCGTTCGAGTGGCTTCGCAGTTCTAAGTTTTAAGGAGAG
TTGACCGCGGCGAGTAGCTGTTCTCCTTAACAGTCAAGTCTCGTTGCTTCGCTGTTCGAATTTCA
CTATTCTAACTGGTTGGCAGAGACCCTATTCGATCGTATGGACCGGAACGACTCTCCTTCCTTAA
AGTATAGAAGCGTATTCGAGTTCAACCTCAAACAGCTTCGCGCCCTTCTTAGCTCTCTTCTTCTA
GTCTCGCTCGTTGCTTCGCAGTTCTTCTTTTAGCTCCTGTAAGTC
Found at i:519710 original size:28 final size:28
Alignment explanation
Indices: 519670--519725 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
519660 GCTTGGAACT
519670 CCTTTCCCTTCGTTCGAGTGGCTTCGCA
1 CCTTTCCCTTCGTTCGAGTGGCTTCGCA
519698 CCTTTCCCTTCGTTCGAGTGGCTTCGCA
1 CCTTTCCCTTCGTTCGAGTGGCTTCGCA
519726 GTTCTAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.07, C:0.36, G:0.21, T:0.36
Consensus pattern (28 bp):
CCTTTCCCTTCGTTCGAGTGGCTTCGCA
Left flanking sequence: Indices 519170 -- 519669
AGATTCTTAAGACTTCCCTGGAAGATTCTTCTCGCCCAGGCTTTGACTTTCTCGTGCAATCCAAA
ATTCGACGTACTATCGAGTTGCTAAACTCCGAAAATTTTGGATCACTCATTCGGAAGAGGTCATT
TCGAAGACCTGCTTGGAAAGTAATTCCTTAAGTAAACATCTTTTGTCAATCGAGGAGAGCAAGAA
AATGGATGCAGCAAGAAAACGGATGCGCGTGACTAACGCGCAACGGCTTTCACGCTAGTGCGCTC
ATCCGCTGCTTGTTGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTTCATGTCAAA
AAGCCGTCTTTTAAGCACGACTGGAAGATTTCTAAGTGAACCCAATGTTATGCTTAACACATGCA
ATTCGTCATTGAGATACTAGGCCAACTCAAAGAGGGAAATGCAAGTAGCAGTTCTAATAGAAGCG
TAGCTGTTCTAAGAAAGAAGGAGAGTCGCTTTCAAGCTTGGAACT
Right flanking sequence: Indices 519726 -- 520225
GTTCTAAGTTTTAAGGAGAGTTGACCGCGGCGAGTAGCTGTTCTCCTTAACAGTCAAGTCTCGTT
GCTTCGCTGTTCGAATTTCACTATTCTAACTGGTTGGCAGAGACCCTATTCGATCGTATGGACCG
GAACGACTCTCCTTCCTTAAAGTATAGAAGCGTATTCGAGTTCAACCTCAAACAGCTTCGCGCCC
TTCTTAGCTCTCTTCTTCTAGTCTCGCTCGTTGCTTCGCAGTTCTTCTTTTAGCTCCTGTAAGTC
TCGTTGCTTCGCTGTTCTAAGAAAACTCTCCCATGGAACACCTTTCCTTACAGTCTCGTTCAAGC
AGCTCCTTTCTTAGCAGTTCTAATTAAAGAACTATTAGTAGAAGTAATTCTTATTCCCCTCTCCT
TACAGTCTCGTTTCTAAAGCTTTCCACGCTGTTCTTCTTTCACTCGCAACTTCCCCGATTCAATT
ACTTTCTGCGGCTGATGCCTCTTCCCCTAAGGACATTTTAGGCGC
Found at i:521822 original size:22 final size:22
Alignment explanation
Indices: 521791--521855 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 22
521781 AAGCCTTGTT
*
521791 ATAATAGAATAGTTCCATTTGA
1 ATAATAGAATAGTTCAATTTGA
* *
521813 ATAATTGAATAGTTCAATTCGA
1 ATAATAGAATAGTTCAATTTGA
*
521835 ATAATAGAATACTTCAATTTG
1 ATAATAGAATAGTTCAATTTG
521856 GAACCCTAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (22 bp):
ATAATAGAATAGTTCAATTTGA
Left flanking sequence: Indices 521291 -- 521790
CTTAGAATAGAAGAGTTCCATGCCTTGTTATAATTGAACGATTCTATTAGTTGGCAAGAAGTAAG
GAAATGAGACGAGACGCAACTTGACTGCAAGGAGAGGAGTGAAAGCCGCTCTTAAAGGAACGAAG
CAACGAGAACGAATGTGAGAGGACGACTGAAAAGGAGGCTCGAAGAGGAGTGTTGACAACTTTCC
AGTTAAGGGAAGGAGCTGAAAAAAGGAGTGGGGAAGAGGAGAAGGGACTCGACTGCAAGGAAGAG
GAATGACCATAGAAGCAACGAGACTGCAAGGAAGAGGAGAAGCAACTCGACTATAAAGGAGAGGA
ATGACCATAGAAGGGACTCGACTGTTTATAATATACGCAACGAGACTATAAACTTAGAACAGCTA
CGCCACTTAAGTAATATCGTAAAGAAGAACTGCTACTAATAGTTCTTTAATTAGAACTGCTACGC
AACTCGCCTTTACTATAAGGAAGGAGAGGCGTGGAAAGCCTTGTT
Right flanking sequence: Indices 521856 -- 522355
GAACCCTAACCCGCTAGAAAAAGGAAAGCGGCACCAACACTTAATAGCTCCATTTCTTGTTCCCT
CGCGTTCGGCTATAGCAAGAGCCCCCGAATCTAGAGCTGCTTGTCGTTCCAACCCAGTTCCAACA
ATGCATTTCTCGGAGCGAGAAAGAGGAACTGCTTGACGTTGCATATTAGAACTCATTAAAGCTCG
ATTCGCATCATTATGTTCGATAAAAGGAATGAGGGAAATCGAAAAATATTGAAAAGGAAAAAGAC
TTCGAAGATGAACCTGTTCCCATGCAATAGTCAAGAATTCTTGACGGTATCGAGCTGGAACAACC
TGTTCTTCCTTGAGTACGACTACGGCTATGAAAAGCTTATCGAAAGAGGAGGAAAGAGCTATAAG
GAAGACTGATTCACTCGCTTTCGAGAACTAAGATTTACAGCTTATTCCCCGGAAGAAGATGAAGA
AGATTCGCCGAACGTCCCAATGGCGATTAACCACGTACGGGTGCA
Found at i:539336 original size:44 final size:44
Alignment explanation
Indices: 539288--539373 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 44
539278 TGACTCCTAC
*
539288 CGAAGCAAGCGTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
1 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
*
539332 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCCCCTTTG
1 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTG
539374 GTGAGCTGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.19, C:0.35, G:0.19, T:0.28
Consensus pattern (44 bp):
CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
Left flanking sequence: Indices 538788 -- 539287
AGCTTGCACCGAATTGCTTACCCGCGGAACTCATTTAACCCGACCCTGCATAAGTACCAATGCCC
CTTCCCCTTTCACCTCTAGGAAAAACTTCTGGGATGAGCCCTTCTACTCGTCATTTTTATATTAG
AGGGAAAATTCTCGATCCGCTCCGATCAAGGCTTATAAAAGCATCAACCTCATCCTAAAAGGACT
CCTTTAGCTTTGGGGTTGATTTACGTGGCTCAAGACTTTGAGTCAAGAGGTCAGGTGTTCAGAAA
GGTGGTGATGCGGCATTGGCATTTTCAGCAAATTCATCAGATAGCTTGCCTTCTTTTCGTTTACG
TGGCTACATACTTGTAGCGATCAAAGGGCATATTTATTATTATTTATTATTTAACTAAGTCAAAG
GTAATTGTATGGGCCTTTGCTTCGAGAACAATCGTATTAGCGCCTTCGCAGCCTGCCTTTCCATT
CTTCGAGTGCAGTTCCTTCTTGAGCCTTTTCTTTTTGACTCCTAC
Right flanking sequence: Indices 539374 -- 539873
GTGAGCTGACCTTCTTGTGTCACGAGTGATGTCAAACCTCCTTCTTGTCTTCTATTCCGGGAAGT
GGTATAATAGGTCCCCTAAGGGAAGCCCTTTGGCAGCTGTCCGAGCCTTCCCTTGATTGTGCCTT
TAGGCTTTCTTCTTGCTGCTTTGTTTGCGCTTTCGAATCCGCTTCTGTAAAGAAAGGAGAAGAGA
GAGGCGTCGGCTAACTAAGGACGATGATGGAAACTCTCCCTGAAAGGTGAGCAAGAAGAGTCTTC
ACTACTAGCTAGTATTGAAAGAAAAGAAGGCCTACCTTCGCTTTGTGCGCTAAGAGCTTTCTTTC
CTGTAGGATAGGAAGAATGGAATAGGAAGATAAAAGGACATTTGAAGGAGTGAAACTGAACCAGA
AAAAGGCCCTTCTCTCCGGCATCAACATCCTTTCGTAGTACCCTACCCCCAGGGGAATTCGAATC
CCCGCCGTCTCCTTGAAAGAGAGGTGTCCTAACCACTAGACTTTA
Found at i:545613 original size:35 final size:35
Alignment explanation
Indices: 545567--545666 Score: 200
Period size: 35 Copynumber: 2.9 Consensus size: 35
545557 AAAAGAATTT
545567 CCCTCTCCCTGTAGGTCGAGCCTCCTTTTCAGTCG
1 CCCTCTCCCTGTAGGTCGAGCCTCCTTTTCAGTCG
545602 CCCTCTCCCTGTAGGTCGAGCCTCCTTTTCAGTCG
1 CCCTCTCCCTGTAGGTCGAGCCTCCTTTTCAGTCG
545637 CCCTCTCCCTGTAGGTCGAGCCTCCTTTTC
1 CCCTCTCCCTGTAGGTCGAGCCTCCTTTTC
545667 CCTCTCACTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.08, C:0.41, G:0.19, T:0.32
Consensus pattern (35 bp):
CCCTCTCCCTGTAGGTCGAGCCTCCTTTTCAGTCG
Left flanking sequence: Indices 545067 -- 545566
CAGTGCTTTCTTTCACAGCAAGAAAGAATTGAATTAGCCTCGGAGAACTGAACTACCTTGATCTG
AATCTCTGGAACTCACAGAAGACCAAGGCAAGTCCACTCTCAATTCAGCATAAGCTTGGGATCTT
TCTTTCCTAAAGCATTTCCCTTGAAGCCAGGTCTTTCTTCTCTTCTTTAAAGCCTGGAGCTGGAC
TTCTTTTTCCTGACTCGATTCACAGTTTAATCACACTAAGCCAGAGCCCAACCAGGGTGAGAGAG
ATAGGAGAGTAGGGACGGGGAACCAATGTCACCAACAACACTAGCAGTCTCGGATCTTTGAATAG
ACAGAGAGAGATGCTCTTCCTGCGGCCCAAGAGCGTATTCGTTCAAAGAGCTGGCAATGACTTTC
TTCCCACCCGGAAATCGTAGTAAGCCGGGAGAAAGACATTCATATATTCCCCAGGCACGGGATAA
AGGGAAAGAGAGAGCCGAGAGCCGGGAACGCAATAAAAAGAATTT
Right flanking sequence: Indices 545667 -- 546166
CCTCTCACTTCGTTCGAGCTTCATTACATCCACCCTCTCACCGCCCTATTCACTCAGATCGGAGA
TCAAGATTGAATGCAAAAGCCTAGTTCCAACGAAAGTCGAGCTGCAGCCCCTGAGGTCCCTCATG
CCAAAGCAGCAGAGTAGACTAGACAGACGTGTCCCTTCTCACGCATACGCTATGCCCCTTTTTGT
GCTCACGAATCAACTTCCGGGCACCGGTAACCAAACTTTCTTTAGTATACAACTATAATATAGGG
CCCAGCGTGCCAAGTAGCTCCTCTATCTAAGGCTAAGGTAAGCAGAGATCTTCTGATACCCCCCG
TTCAACCAATGGAGATAGCAAGGAGATAGAATAAGTCATCTTCTACGATTGGTAAAGGGATCAAA
CGACTTTGAGCTTTGGCATGTTGTACGCGTGGGAAGGAATTCCATTCAACTAGTTCAATGACCCT
AGAGGGAATGAACGCATTAAGCTTGAAAGCATGAAATTCAGTTGC
Found at i:545619 original size:18 final size:18
Alignment explanation
Indices: 545567--545654 Score: 58
Period size: 17 Copynumber: 5.0 Consensus size: 18
545557 AAAAGAATTT
545567 CCCTCTCCCTGTAGGTCG
1 CCCTCTCCCTGTAGGTCG
** * *
545585 AGC-CTCCTTTTCA-GTCG
1 CCCTCTCCCTGT-AGGTCG
545602 CCCTCTCCCTGTAGGTCG
1 CCCTCTCCCTGTAGGTCG
** * *
545620 AGC-CTCCTTTTCA-GTCG
1 CCCTCTCCCTGT-AGGTCG
545637 CCCTCTCCCTGTAGGTCG
1 CCCTCTCCCTGTAGGTCG
545655 AGCCTCCTTT
Statistics
Matches: 48, Mismatches: 16, Indels: 12
0.63 0.21 0.16
Matches are distributed among these distances:
17 24 0.50
18 24 0.50
ACGTcount: A:0.08, C:0.41, G:0.20, T:0.31
Consensus pattern (18 bp):
CCCTCTCCCTGTAGGTCG
Left flanking sequence: Indices 545067 -- 545566
CAGTGCTTTCTTTCACAGCAAGAAAGAATTGAATTAGCCTCGGAGAACTGAACTACCTTGATCTG
AATCTCTGGAACTCACAGAAGACCAAGGCAAGTCCACTCTCAATTCAGCATAAGCTTGGGATCTT
TCTTTCCTAAAGCATTTCCCTTGAAGCCAGGTCTTTCTTCTCTTCTTTAAAGCCTGGAGCTGGAC
TTCTTTTTCCTGACTCGATTCACAGTTTAATCACACTAAGCCAGAGCCCAACCAGGGTGAGAGAG
ATAGGAGAGTAGGGACGGGGAACCAATGTCACCAACAACACTAGCAGTCTCGGATCTTTGAATAG
ACAGAGAGAGATGCTCTTCCTGCGGCCCAAGAGCGTATTCGTTCAAAGAGCTGGCAATGACTTTC
TTCCCACCCGGAAATCGTAGTAAGCCGGGAGAAAGACATTCATATATTCCCCAGGCACGGGATAA
AGGGAAAGAGAGAGCCGAGAGCCGGGAACGCAATAAAAAGAATTT
Right flanking sequence: Indices 545655 -- 546154
AGCCTCCTTTTCCCTCTCACTTCGTTCGAGCTTCATTACATCCACCCTCTCACCGCCCTATTCAC
TCAGATCGGAGATCAAGATTGAATGCAAAAGCCTAGTTCCAACGAAAGTCGAGCTGCAGCCCCTG
AGGTCCCTCATGCCAAAGCAGCAGAGTAGACTAGACAGACGTGTCCCTTCTCACGCATACGCTAT
GCCCCTTTTTGTGCTCACGAATCAACTTCCGGGCACCGGTAACCAAACTTTCTTTAGTATACAAC
TATAATATAGGGCCCAGCGTGCCAAGTAGCTCCTCTATCTAAGGCTAAGGTAAGCAGAGATCTTC
TGATACCCCCCGTTCAACCAATGGAGATAGCAAGGAGATAGAATAAGTCATCTTCTACGATTGGT
AAAGGGATCAAACGACTTTGAGCTTTGGCATGTTGTACGCGTGGGAAGGAATTCCATTCAACTAG
TTCAATGACCCTAGAGGGAATGAACGCATTAAGCTTGAAAGCATG
Found at i:556621 original size:38 final size:38
Alignment explanation
Indices: 556575--556708 Score: 171
Period size: 38 Copynumber: 3.5 Consensus size: 38
556565 TTCACGCCTC
*** *
556575 TCCTTACAATAAAGTCGAGTGG-TCAACACTCCTCTCCT
1 TCCTTACAATAAAG-CGAGTGGCTTTTCGCTCCTCTCCT
*
556613 TCCTTACAATCAAGCGAGTGGCTTTTCGCTCCTCTCCT
1 TCCTTACAATAAAGCGAGTGGCTTTTCGCTCCTCTCCT
*
556651 TCCTTACAATCAAGCGAGTGGCTTTTCGCTCCTCTCCT
1 TCCTTACAATAAAGCGAGTGGCTTTTCGCTCCTCTCCT
* *
556689 TCCTTATAGTAAAGGCGAGT
1 TCCTTACAATAAA-GCGAGT
556709 TGCAGCCTGC
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
37 7 0.08
38 73 0.85
39 6 0.07
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.32
Consensus pattern (38 bp):
TCCTTACAATAAAGCGAGTGGCTTTTCGCTCCTCTCCT
Left flanking sequence: Indices 556075 -- 556574
CGAAATGAGAGGCCGGAGAAGGGCTCGAAGTCTTTAGTTATTACTCCCGTAGCTCACTAGCATTA
CTCTTGCTCACAAGGGCGCAATACCCTTCTTTTGCTACACATTCACTGGCTTTAGAGCTAATGAA
TTAGAATTACTGTAATTACAGAAGTAATCACAGAGACTAGTAGCAGGTTGGATAGAACACTCTCC
AAAGTTGAGGGGCACCTTCCCTTATTCTCCTTCCTTTCCTTTCTCTTGTGGAACAACATAGCTGG
AGCATTCAAAATAGGTATTGAATTCCGTATTTTAAACCTAAGTTTTTGAATGGCTATCACGTCCA
CTAACTATTCCATCCAATTTCTGATTCTACGCCTCTTGGGAGCGGCCAGCCCTAGGCCTTCGATA
AAGAGATTCAAATGGTCTTCCCGCTCCTTTCCAACTTTATAGTCAAGCAAGTGGCTGGAGCGCCT
CTCAAACCTTATAGTCAAGAGAGTGAAAATGGCTTTTCACGCCTC
Right flanking sequence: Indices 556709 -- 557208
TGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGGGATCGCGACC
CTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCA
TCCTCACCTTCCTCCGGCTTATCACCGGCAGTCTGTTCAGGGTTCCAAACTCAACGATGGCAACT
AAACACGAGGGTTGCGCTCGTTGCGGGACTTAACCCAACACCTTACGGCACGAGCTGACGACAGC
CATGCACCACCTGTGTCCGCGTTCCCGAAGGCACCCCTCTCTTTCAAGAGGATTCGCGGCATGTC
AAGCCCTGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCC
CCCGTCAATTCCTTTGAGTTTCATTCTTGCGACCGTACTCCCCAGGCGGGATACTTAACGCGTTA
GCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCAT
Found at i:558955 original size:18 final size:18
Alignment explanation
Indices: 558934--558971 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
558924 TCGGGATCAC
558934 TAACTAATACTAATCTAA
1 TAACTAATACTAATCTAA
558952 TAACTAATACTAATCTAA
1 TAACTAATACTAATCTAA
558970 TA
1 TA
558972 TAATAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (18 bp):
TAACTAATACTAATCTAA
Left flanking sequence: Indices 558434 -- 558933
CTGCCCCTATCGGAAATAGGATTGACTACCGATTCCGAAGGAACTGGAGTTACATCTCTTTTCCA
TTCAAGAGTTCTTATGCGTTTCCACGCCCCTTTGAGACCCCGAAAAATGGAAAAATTCCTTTTCT
TAGGAACACATACAAGATTCGTCACTACAAAAAGGATAATGGTAACCCTACCATTAACTACTTCA
TTTATGAATTTCATAGTAATAGAAATACATGTCCTACCGAGACAGAATTTGTAACTTGCTATCCT
CTTGCCTAGCAGGCAAAGATTTACCTCCGTGGAAAGGATGATTCATTCGGATCGACATGAGAGTC
CAACTACATTGCCAGAATCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCATGG
TACACTCCTCTTCCCGCCGAGCCCCTTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGGTG
CCAACAGTTCATCACGGAAGAAAGGACTCACTAAGTCGGGATCAC
Right flanking sequence: Indices 558972 -- 559471
TAATAGAAAATACTAATATAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTG
CTACCGCGGGCTTTACGCAATCGATCGGATTAGATAGATATCCCTTCAACATAGGTCATCGAAAG
GATCTCGGAGACCCACCAAAGTACGAAAGCCAGGATCTTTCAGAAAACGGATTCCTATTCAAAGA
GTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTGGGATCCAAATTCGAGATTTTCC
TTGGGAGGTATCGGGAAGGATTTGGAATGGAATAATATCGATTCATACAGAAGAAAAGGTTCTCT
ATTGATTCAAACACTGTACCTATGGGATAGGGATCGAGGAAGGGGAAAAACCGAAGATTTCACAT
GGTACTTTTATCAATCTGATTTATTTCGTACCTTTCGTTCAATGAGAAAATGGGTCAAATTCTAC
AGGATCAAACCTATGGGACTTAAGGAATGATATCAAAAAAAGAGA
Found at i:559002 original size:23 final size:23
Alignment explanation
Indices: 558957--559002 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
558947 TCTAATAACT
* * *
558957 AATACTAATCTAATATAATAGAA
1 AATACTAATATAATAGAAAAGAA
558980 AATACTAATATAATAGAAAAGAA
1 AATACTAATATAATAGAAAAGAA
559003 CTGTCTTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.26
Consensus pattern (23 bp):
AATACTAATATAATAGAAAAGAA
Left flanking sequence: Indices 558457 -- 558956
GACTACCGATTCCGAAGGAACTGGAGTTACATCTCTTTTCCATTCAAGAGTTCTTATGCGTTTCC
ACGCCCCTTTGAGACCCCGAAAAATGGAAAAATTCCTTTTCTTAGGAACACATACAAGATTCGTC
ACTACAAAAAGGATAATGGTAACCCTACCATTAACTACTTCATTTATGAATTTCATAGTAATAGA
AATACATGTCCTACCGAGACAGAATTTGTAACTTGCTATCCTCTTGCCTAGCAGGCAAAGATTTA
CCTCCGTGGAAAGGATGATTCATTCGGATCGACATGAGAGTCCAACTACATTGCCAGAATCCATG
TTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCATGGTACACTCCTCTTCCCGCCGAGCC
CCTTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGGTGCCAACAGTTCATCACGGAAGAAA
GGACTCACTAAGTCGGGATCACTAACTAATACTAATCTAATAACT
Right flanking sequence: Indices 559003 -- 559502
CTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTTTACGCAATCGATCGGATT
AGATAGATATCCCTTCAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGTACGAAAGCC
AGGATCTTTCAGAAAACGGATTCCTATTCAAAGAGTGCATAACCGCATGGATAAGCTCACACTAA
CCCGTCAATTTGGGATCCAAATTCGAGATTTTCCTTGGGAGGTATCGGGAAGGATTTGGAATGGA
ATAATATCGATTCATACAGAAGAAAAGGTTCTCTATTGATTCAAACACTGTACCTATGGGATAGG
GATCGAGGAAGGGGAAAAACCGAAGATTTCACATGGTACTTTTATCAATCTGATTTATTTCGTAC
CTTTCGTTCAATGAGAAAATGGGTCAAATTCTACAGGATCAAACCTATGGGACTTAAGGAATGAT
ATCAAAAAAAGAGAGGGAAAATATTCATATTAAATAAATATGAAG
Found at i:570043 original size:17 final size:17
Alignment explanation
Indices: 570013--570046 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
570003 GAATCACCAC
*
570013 ACGAGAAAGGTCCTTTT
1 ACGAGAAACGTCCTTTT
*
570030 ACGAGAAACTTCCTTTT
1 ACGAGAAACGTCCTTTT
570047 TTCGCTTTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (17 bp):
ACGAGAAACGTCCTTTT
Left flanking sequence: Indices 569513 -- 570012
ATTTTTTGCTTTTCACTATCATTCTGTTTTTCATCTTCTTTACCATACTTTTCATAGAAGTAGTT
GTGCATAATCTTCCAAAATTGAATAATCTCTTCACGGTGTTTATTGTCGAGATCTTTGTAATAGA
TTTCGAGCCACTTGGCAGAGGGTTGTCTTGACATGGCATTTTTTGCTTTTCACTTTTATCATTAG
CTAAATTAAGATTTTCTTTCTGTCTTGTGGTATTTATCTTTTTTCAGAGATGTTCTGTTCTCTGT
TGTCGAACCACTGTTATTGACTTACCCTCCAGCCGATTGAATACGCTGAAGAAAGGCATTGAGGA
GAGAAATTACCTCTCACTCTTGGGATTTTCTTTTTCAAGTGCCACACCCCCCATAGTAAAGTAAG
CAACAACTCTTTTCAAGTATTCTAATAAGAGATATTTCATCAAGCTTACTAGAATATTCGAACCT
CGACAAAATGACACTTTCATCTTATTATAGCTAAAGAATCACCAC
Right flanking sequence: Indices 570047 -- 570546
TTCGCTTTCCATTCGCATGTTACAAATAGTCCTTTTTTTCTGAATATCGTATATAGTGTAGTTAG
TATATATAACGTACTTTTTGACTTTATTTAATTGTTTAAAGAATGAAAGTAATCGTTGATAAAAA
GAACGAGGGGAAGAATCGACGAGGCGAGTGTTCTCGAATAGAAAATCCTGATGATGATGAAAAAA
GCGTGAGGAGAATTCGAGATTCAAATGTTAGAGGAAGGTGCAAAAGCAATCAGTGGCTTAGAGTC
CCATTACGTTCTTTTTATAGTACTCTTCGCGGAGTCAATAACCCTGAGTTTTGTCCTTTATTTGC
ATCGCCTCTTATCTTAACCGTGTACAACAAAAGGGTCGGAGAGATCCTGGAGTGGAACAAAAGGT
TTGAGAAACCCATCATCTTCCAGTACAGCTGGGTAAGAGGGGTTAAAATAGGGGTTCAGGAGGGC
AGGGCACGAGACTTAGAAATTTGATGTTATTTATTTCTAGTAAAC
Found at i:572474 original size:44 final size:44
Alignment explanation
Indices: 572426--572560 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 44
572416 AGCTGGAGCG
*
572426 AAAGCCGCTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGA
1 AAAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGA
* ** **** *
572470 AAAGCAACTCG-CTTTCCTATA--AG--GTTTGAGAGGCG-TG-
1 AAAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGA
*
572507 GAAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGA
1 AAAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGA
*
572551 AAAGCAACTC
1 AAAGCCACTC
572561 TCTTGACTAT
Statistics
Matches: 64, Mismatches: 20, Indels: 14
0.65 0.20 0.14
Matches are distributed among these distances:
37 9 0.14
38 10 0.16
39 7 0.11
40 2 0.03
41 2 0.03
42 7 0.11
43 10 0.16
44 17 0.27
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (44 bp):
AAAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGA
Left flanking sequence: Indices 571926 -- 572425
TGGGCTAGTCTTGGCTTTCCTGGGTTCACTAGAAATGCCATCTATCGCACTGGATTTCCTCACTT
CAAACACTATAAGTGAGCCACTTAGAGTTCCCGGTTTTGATAACTTGAAAGCAAGGGTGAAGATT
CCATCTTAGCCAAGGACCCCACTAACCCGCTAAAAGATCTCATCCCCCCTTCATCTTGACTGAGG
AACATGAATTGGGTCTATCGTAGCTTAACTCTTTTGGGAAAGGTATCCAAGAAATGAATTTCGTG
GAATAGGAATAGCTCATTTGAATGCCGAAACTCTTCTCTTCTACGTCAGCCTTCGAGCAGAACCC
ATTTCGAGTCGATAATTCCAAAATTCCATCATCCCTCGCTCGTTGACTTGGTGCATAAAATCTTT
CAATCTCGTACCTAGCTTTTTCAAAGCCCTATCCCTATGCCTCAAGTAAATAAAAAAGCTAATAG
CAACCGCGCGTTGTAGCCGCTTTTGATTGAAAGGTAGCTGGAGCG
Right flanking sequence: Indices 572561 -- 573060
TCTTGACTATAAGGTTTGAGAGGCGCTCCAGCCACTTGACTTTATTATAAAAGGAAAGGAGCTGA
AAAGCCGCTTGCTTGACTATAAGGAAGGAAAGGCGCTCCAAGCAACTCTCTTGACCCGCTTACAA
GAGAGGAGTGAAAGCCACTCGACTATAAGGAGAGGCGTGAAAAGCCATTTTCACTCGCTTGACTA
TAAGGAAGGAGAGGCGCGGAAAGCCACTTGCTTGACTATAAAGTTGGAAAGGGGTTCGACTCAAT
ACTCTTGTGTGTATCCTTTGGCCACCAATCTAGCCTTCAACCCCTCAACTGCTCCATCAGCTTTT
TGTTGACTTTATAGACCCACTTGTAGCCAATGGCTTCTTTCCCTAGAGGAAGAGAGACTCAATCC
CAAGTAGCAAACCATTCTAGTGCTACGATCTCTTTCTGCATAGAGCTGCCAGCAGGGTTGAGATA
TGGCCTCTGCAAAGGTATCAGGTTCAAAAAGATGGATGAAATTGC
Found at i:572518 original size:81 final size:81
Alignment explanation
Indices: 572427--572649 Score: 289
Period size: 81 Copynumber: 2.8 Consensus size: 81
572417 GCTGGAGCGA
* **
572427 AAGCCGCTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGAAAAGCAACTCGCTTTCCTATAA
1 AAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGAAAAGCAACTCGCTTGACTATAA
*
572492 GGTTTGAGAGGCG-TGG
66 GGTTTGAGAGGCGCT-C
*
572508 AAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGAAAAGCAACTCTCTTGACTATAA
1 AAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGAAAAGCAACTCGCTTGACTATAA
572573 GGTTTGAGAGGCGCTC
66 GGTTTGAGAGGCGCTC
* * * ** *
572589 CAGCCACTTGACTTTA-T-TA-T---AAAAGGAAAGGAGCTGAAAAGCCGCTTGCTTGACTATAA
1 AAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGAAAAGCAACTCGCTTGACTATAA
572648 GG
66 GG
572650 AAGGAAAGGC
Statistics
Matches: 129, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
75 36 0.28
78 1 0.01
79 2 0.02
80 1 0.01
81 88 0.68
82 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (81 bp):
AAGCCACTCGACTTTATTATATTAGAAAAAGGAGAGGAGCTGAAAAGCAACTCGCTTGACTATAA
GGTTTGAGAGGCGCTC
Left flanking sequence: Indices 571927 -- 572426
GGGCTAGTCTTGGCTTTCCTGGGTTCACTAGAAATGCCATCTATCGCACTGGATTTCCTCACTTC
AAACACTATAAGTGAGCCACTTAGAGTTCCCGGTTTTGATAACTTGAAAGCAAGGGTGAAGATTC
CATCTTAGCCAAGGACCCCACTAACCCGCTAAAAGATCTCATCCCCCCTTCATCTTGACTGAGGA
ACATGAATTGGGTCTATCGTAGCTTAACTCTTTTGGGAAAGGTATCCAAGAAATGAATTTCGTGG
AATAGGAATAGCTCATTTGAATGCCGAAACTCTTCTCTTCTACGTCAGCCTTCGAGCAGAACCCA
TTTCGAGTCGATAATTCCAAAATTCCATCATCCCTCGCTCGTTGACTTGGTGCATAAAATCTTTC
AATCTCGTACCTAGCTTTTTCAAAGCCCTATCCCTATGCCTCAAGTAAATAAAAAAGCTAATAGC
AACCGCGCGTTGTAGCCGCTTTTGATTGAAAGGTAGCTGGAGCGA
Right flanking sequence: Indices 572650 -- 573149
AAGGAAAGGCGCTCCAAGCAACTCTCTTGACCCGCTTACAAGAGAGGAGTGAAAGCCACTCGACT
ATAAGGAGAGGCGTGAAAAGCCATTTTCACTCGCTTGACTATAAGGAAGGAGAGGCGCGGAAAGC
CACTTGCTTGACTATAAAGTTGGAAAGGGGTTCGACTCAATACTCTTGTGTGTATCCTTTGGCCA
CCAATCTAGCCTTCAACCCCTCAACTGCTCCATCAGCTTTTTGTTGACTTTATAGACCCACTTGT
AGCCAATGGCTTCTTTCCCTAGAGGAAGAGAGACTCAATCCCAAGTAGCAAACCATTCTAGTGCT
ACGATCTCTTTCTGCATAGAGCTGCCAGCAGGGTTGAGATATGGCCTCTGCAAAGGTATCAGGTT
CAAAAAGATGGATGAAATTGCAAAAAAGACTCGTGGGAAGTAGACAGAGACTTAGTTGATACAAA
CCTATGAATAGGAAAACGAAGACGGGTGGATCTACGTACCCCGAG
Found at i:574235 original size:42 final size:42
Alignment explanation
Indices: 574188--574272 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
574178 CCCATTCATC
574188 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
*
574230 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
574272 C
1 C
574273 GTTAGTCACG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.28, C:0.28, G:0.33, T:0.11
Consensus pattern (42 bp):
CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
Left flanking sequence: Indices 573688 -- 574187
GAGTAAAACGCCCAAAGATAACGTGTAGAGGAGATCGCTCACCAATAATAGGAGCCATCGTCTTC
TTACTCAGATAAGCGGCCATCATGAAATTGGCTTTACTAGGGATCCTATAATAGGGAACTTTCAT
TCCCAGTAGAAGTCCTCGAGCAACTTTACTAATACTAATAAATAAGGGGAAGGCCCAACATTTTC
TATTAGTATAAGGAAGGCGCTAGCTAGCGCCCAACCTATACAAGGGCTTTCCACCTCCATTTGGT
CGTGCTGCTATGATGTAACGTGCAGTCGTCCCAAGGCAGCAGGATGTATGGTATAGGGCCCCCTA
TTTTATCTCCCAACAAGTCCTTTATGGATTTCGAGTCGGGAATAGAGCTGTGGCTTATTCGGCGC
TATATCACAATTCATTCTCGGGCATAGCTGTTCACGAAAGGTGGCATGGGACATCTGTCAGCGGC
GGGAGTCTTACATCCGAGCGAGAGGTCAGACCAATCCCATTCATC
Right flanking sequence: Indices 574273 -- 574772
GTTAGTCACGCGCATCCGTTTTCTTGCTGCAGCCGTTTTCTTGCTCCGAACAGATCTTGTTGAAT
GAATTGATCCATTGTTGTATGCCCTACTTCTTAGTCAATTTATTCCTACTCGGACCCGCCGTACT
TCCTTTGACTACTCCTGAGATATAGTGGAAAGATTTTGTTATGGTGGAGAGTGGGGAGTGAAAAG
ACCAATGCAGCAGAGAAGGACTGCATGAATCGGAATCCACTTATTAAGACAGACGACCGAGAAAG
AAAGGCTCCGCGTTCGAACATTGGTTGATCTTAGCTTAGCGTGCTAGCCGCTGCTTCATTTCGTA
TAGTGATAACGCTTTCTCTTTCTTAGCGCTCCGCCCCCCTTGTATAGTAAGGGCTACTTTGGTTG
CGCGGCTTTCTCTTATAGGGTGACTTGACTCAGCTTGACCTACTTGACTCAGCGGTTAGAGTATC
GCTTTCATACGGCGAGAGTCATTGGTTCAAATCCAATAGTAGGTA
Found at i:577936 original size:30 final size:31
Alignment explanation
Indices: 577900--577957 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
577890 AGAGGAGCGA
*
577900 AAGCCACTTGACTG-CAAGGAAAGGAGTTTC
1 AAGCCACTCGACTGTCAAGGAAAGGAGTTTC
* *
577930 AAGCCACTCGACTGTTAAGGAGAGGAGT
1 AAGCCACTCGACTGTCAAGGAAAGGAGT
577958 GTTGACCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.33, C:0.19, G:0.29, T:0.19
Consensus pattern (31 bp):
AAGCCACTCGACTGTCAAGGAAAGGAGTTTC
Left flanking sequence: Indices 577400 -- 577899
GCCAAGGCTCGAAGACCTCTGGGACATGGAACAGTACTTTAAGGCTGTTCGTGCCCCTTTTGACG
ACCAAGGCACAATGGCAACAATCTATCTCTCTGGGGATGCGAAGAATATTTGAAACGACTTTCGA
ACCATCACACAGATTCCGACCCAACTACCGTAAGAACAGAATGGAAGGGCAAAAAAGGATTCTAT
GCGCAGACGTGAAAGCTCTATCAATAGAAAGATTGACGCTTCTTTTTCTTTTATTTAGAGAGGAA
TGATTCCCTCGTCTGAGAACCGCCATTCACGTACTATTCCTCCCCACTAAAAAGAGCGATTGAGA
ATCTCGAGAACCTAAACAAAAATGCAGAAGTGAGCGTACCCTAAGGCTCTCCTCTCTCCCCCTTT
TTTAGCCAACACCATCAACCCCATTTTTCACTGGGTCAAAGCCAAAAATCTGATGAATAGAAGGA
AAGGAGCGAAGCAACTCTCTTGACTATAAGGAAAGAGAGGAGCGA
Right flanking sequence: Indices 577958 -- 578457
GTTGACCACTCGACTTTATTGTAAGGAGAGGCGCAGAAGCAACTCTCTTGACCCGCTTACAAGAG
AGGAGTGAGTGAAAGATAGGCGAACGACTTGACTATAGTATAGGTCGGATGTTTCCGTGAGCAGT
AAGCAGCAGATCTCCCCTTATTTTGGGAAAGCTGGTGGCCGCGTGTGAATTCTTTCAAGGCAAAG
GGCGGCCTGATTCGACATTGTTGTTTACCAAATATATCATGTCCGGTCGAGGTGGTTTTCGTTTA
CCAGCACGTAGGTGTTCTAAATTCCTATGACCGAGTCTTTCTGGCCCCTGTGAACATCTTTTCTT
AATGTATTAAAGAGGGCCTCTCTAACCGGTGAAAAGTGGTGGGTGTCCACTAACGGCCATTCCTG
GCTCGGCTCCGATAACGCAATTCCGGGAGGAGTCGGTAGTTGGGCACTGGATCCCTTCGGACCTG
GAGAATGTGTGACGCTGGGTCGGGGTTTGGTGAACCAACTGGTCG
Found at i:583099 original size:12 final size:12
Alignment explanation
Indices: 583082--583108 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
583072 TGCCTTGCCT
583082 CTTTGAATAATG
1 CTTTGAATAATG
583094 CTTTGAATAATG
1 CTTTGAATAATG
583106 CTT
1 CTT
583109 CATTCCAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (12 bp):
CTTTGAATAATG
Left flanking sequence: Indices 582582 -- 583081
AATCCTTGTGTATTCTACTGGTATAGAATCTTTGTGGAAGGCGGGAAACTTCCGTCTAGCGGTCA
TGGGAAAGCCAAAACTTGTATATAATAAGTCAATACTGGGTCGGTCGAGACTCTTTCTTAGTGAA
GTGGGAAGACAGCACCGAATCAGACGGGCACAGAGGAAGAAGTGGTTTCATCCGACCGGCGAGAT
AATTCGATTTCTAGTCAGCTAACTGAGAATCCAATAGAGAAAATTGCTTTTCTAATGATTTCTCG
ATAGAACGATTTCTTGTGAGCCACGAAAGAGATAATCCAAGTCGTAAGTACGAACCACTCAATGG
AGAATCTCAGGCCAATAAGCTACGACTACGAAACGAATTGGATCGGGTTCAGCGCTTGAAAGCTA
TCGAAGAAGAGTCAATTCAATGCTCAAGTCAAAGGGGGGAGTCCACTTATTCAATAGAAGAGAAG
CCTATATCTGCCGACCCTACTTCACTTCCTTATAGTGCCTTGCCT
Right flanking sequence: Indices 583109 -- 583608
CATTCCAGGGCGTAAAAGAAAGCTTAGTATAGCAATTGAATTGACCTTTTGTACTGAGGACGACC
TATGAGATGGTTTGAACCGGTTCTCAAACCTACTACTATACGAACAGTCTTCTTCGGCTAAGGCT
GGCAAATCCAACTCTTTTTTGTTAAAAAGAGATCTCGGATCAAGGGCTATCGACCCGACAGTGCT
CCGTTGGTCCATTTAGTGGATCCTCCCCCCAAAAACAAGATCATATTGAGCAGCAACTTCGAGGA
AGATAGCATTGGGACATGCTATTACCTATGTATGGTGACGGGTGTCATGCCAGAGTCTGTCCGGG
TGGGCTCAAGCTAAAGCAGGAGAAGAGAGTTAGCTTTCTGCTGAGTGAGCCCGAACAGGAGCGGA
CGCACACTAGATCAGAGCAAGTTTCGCTGGCCCAATGGCGCAGACACCTACTAGGATGAGGCATA
GCGGGAATTGAACCCACATCTCGTTGAGCTGCTCCAGCAAGCACC
Found at i:610158 original size:34 final size:35
Alignment explanation
Indices: 610120--610227 Score: 113
Period size: 34 Copynumber: 3.2 Consensus size: 35
610110 GCAGCTCTAT
610120 AAAA-GAGAAAAAGGAATCCAGAATGAACAATCGA
1 AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGA
* *
610154 AAAAGGCAAGAAAACA-G-A--CA-AAGGAAGAAATC-A
1 AAAAGG--AGAAAA-AGGAATCCAGAATGAA-CAATCGA
610187 AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGA
1 AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGA
610222 AAAAGG
1 AAAAGG
610228 CAAGAAAACA
Statistics
Matches: 59, Mismatches: 4, Indels: 21
0.70 0.05 0.25
Matches are distributed among these distances:
30 1 0.02
31 7 0.12
32 1 0.02
33 12 0.20
34 16 0.27
35 13 0.22
36 1 0.02
37 7 0.12
38 1 0.02
ACGTcount: A:0.60, C:0.11, G:0.22, T:0.06
Consensus pattern (35 bp):
AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGA
Left flanking sequence: Indices 609620 -- 610119
TCAAGAAGATGTCGTTGAAAAGCATGGCGCGGATCGCCAACAGGCTTCAACTTGTCTTCAAGAAA
GTGATAAGCCTCCTTTCGTATGTTTGAATACGGGGATTTGTCCAGAATTAGCGAAAGATTCTCTT
CCGACAGCATTAAATCACTAAGTTTGTCTTGGACAAGGCCCTTTCTCTCTAATACCTGAAGGTCG
AAATATTCCAGATCATATATTTTTATAAAATGAGGAACATTAATAGCAGAATCGAAATTTTCGCG
AACAAGTGCAGCATAGTCCCCCGGAGTGTTCTGCGGAGGTATATTATAATATTGAAGGTTCTCTA
GGATTTTGATACGGTCATAGATTTCTGCCTCATTCTCTGCCGCGATCACATTTCTAAACGTAGTA
AGCGATTCAGAACTTGATGAAGATTCCTTTTCTCCAGATTCTCTATCCGAATTTTCACTTTCATT
CGAAGCCGATGAGACCCCAAAAAAAAAAGCTGCGGGCAGCTCTAT
Right flanking sequence: Indices 610228 -- 610727
CAAGAAAACAGACAAAGGAAGAAATCAAAAAGGAGAAAAAGAATCAGATTTTTTTGATTTCTTCT
TCTTATCACAAATAAAGTGATCAATAGGAACGAAAAGACTAAAAGAAGTAGAAATTCAGGGGTGG
TGCTTCTATCTGATGCCAGAAAACGCCCACAGGCAAGAGCTAGACCTGCACCGAAAGCCCTAAGA
ATTTGCTCAAGGATTTTTGTACCAACATTTCCGAATAACGTACCAGCATTTCCTAATAACATAGA
TGTTGAGTGAGAATTTAACGTAGAGTGAGAATTTAACTGAGAATTTAACGTAGAGTGAGAATTTC
ACATAGAAGTAGAGTGAGAATTTACCCTTCGCCAGGGTAAGAGTTTCAAATTTGTGATCATGATT
TAAGGTTTTGTTCTTTCGTGAATCCTTTAAGTTCTTTTGAATCCTTTAAGTTGTTTTGTGAACTC
AACATTGTCAACGGGGCTAACATATATAAATTATCTTCCCCATTT
Found at i:610233 original size:68 final size:68
Alignment explanation
Indices: 610120--610272 Score: 292
Period size: 68 Copynumber: 2.3 Consensus size: 68
610110 GCAGCTCTAT
610120 AAAA-GAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAA
1 AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAA
610184 TCA
66 TCA
610187 AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAA
1 AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAA
610252 TCA
66 TCA
610255 AAAAGGAGAAAAA-GAATC
1 AAAAGGAGAAAAAGGAATC
610273 AGATTTTTTT
Statistics
Matches: 85, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
67 9 0.11
68 76 0.89
ACGTcount: A:0.61, C:0.11, G:0.22, T:0.06
Consensus pattern (68 bp):
AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAA
TCA
Left flanking sequence: Indices 609620 -- 610119
TCAAGAAGATGTCGTTGAAAAGCATGGCGCGGATCGCCAACAGGCTTCAACTTGTCTTCAAGAAA
GTGATAAGCCTCCTTTCGTATGTTTGAATACGGGGATTTGTCCAGAATTAGCGAAAGATTCTCTT
CCGACAGCATTAAATCACTAAGTTTGTCTTGGACAAGGCCCTTTCTCTCTAATACCTGAAGGTCG
AAATATTCCAGATCATATATTTTTATAAAATGAGGAACATTAATAGCAGAATCGAAATTTTCGCG
AACAAGTGCAGCATAGTCCCCCGGAGTGTTCTGCGGAGGTATATTATAATATTGAAGGTTCTCTA
GGATTTTGATACGGTCATAGATTTCTGCCTCATTCTCTGCCGCGATCACATTTCTAAACGTAGTA
AGCGATTCAGAACTTGATGAAGATTCCTTTTCTCCAGATTCTCTATCCGAATTTTCACTTTCATT
CGAAGCCGATGAGACCCCAAAAAAAAAAGCTGCGGGCAGCTCTAT
Right flanking sequence: Indices 610273 -- 610772
AGATTTTTTTGATTTCTTCTTCTTATCACAAATAAAGTGATCAATAGGAACGAAAAGACTAAAAG
AAGTAGAAATTCAGGGGTGGTGCTTCTATCTGATGCCAGAAAACGCCCACAGGCAAGAGCTAGAC
CTGCACCGAAAGCCCTAAGAATTTGCTCAAGGATTTTTGTACCAACATTTCCGAATAACGTACCA
GCATTTCCTAATAACATAGATGTTGAGTGAGAATTTAACGTAGAGTGAGAATTTAACTGAGAATT
TAACGTAGAGTGAGAATTTCACATAGAAGTAGAGTGAGAATTTACCCTTCGCCAGGGTAAGAGTT
TCAAATTTGTGATCATGATTTAAGGTTTTGTTCTTTCGTGAATCCTTTAAGTTCTTTTGAATCCT
TTAAGTTGTTTTGTGAACTCAACATTGTCAACGGGGCTAACATATATAAATTATCTTCCCCATTT
TTTATGTGTCTTTTTGCTCACTGAACACTAACTGAATTATTGCTT
Found at i:610467 original size:21 final size:21
Alignment explanation
Indices: 610441--610482 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
610431 AAGGATTTTT
610441 GTACCAACATTTCCGAATAAC
1 GTACCAACATTTCCGAATAAC
* *
610462 GTACCAGCATTTCCTAATAAC
1 GTACCAACATTTCCGAATAAC
610483 ATAGATGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.26
Consensus pattern (21 bp):
GTACCAACATTTCCGAATAAC
Left flanking sequence: Indices 609941 -- 610440
TCTAGGATTTTGATACGGTCATAGATTTCTGCCTCATTCTCTGCCGCGATCACATTTCTAAACGT
AGTAAGCGATTCAGAACTTGATGAAGATTCCTTTTCTCCAGATTCTCTATCCGAATTTTCACTTT
CATTCGAAGCCGATGAGACCCCAAAAAAAAAAGCTGCGGGCAGCTCTATAAAAGAGAAAAAGGAA
TCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAATCAAAAAGGAGAAAAAG
GAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAATCAAAAAGGAGAAA
AAGAATCAGATTTTTTTGATTTCTTCTTCTTATCACAAATAAAGTGATCAATAGGAACGAAAAGA
CTAAAAGAAGTAGAAATTCAGGGGTGGTGCTTCTATCTGATGCCAGAAAACGCCCACAGGCAAGA
GCTAGACCTGCACCGAAAGCCCTAAGAATTTGCTCAAGGATTTTT
Right flanking sequence: Indices 610483 -- 610982
ATAGATGTTGAGTGAGAATTTAACGTAGAGTGAGAATTTAACTGAGAATTTAACGTAGAGTGAGA
ATTTCACATAGAAGTAGAGTGAGAATTTACCCTTCGCCAGGGTAAGAGTTTCAAATTTGTGATCA
TGATTTAAGGTTTTGTTCTTTCGTGAATCCTTTAAGTTCTTTTGAATCCTTTAAGTTGTTTTGTG
AACTCAACATTGTCAACGGGGCTAACATATATAAATTATCTTCCCCATTTTTTATGTGTCTTTTT
GCTCACTGAACACTAACTGAATTATTGCTTCAATTCTGTTTATTCTTCTTTTCCCCTAAAGGGTG
TCTTATTATTTATGTGTATTTTTGCTTCTCTTATGATTTTTGCTACTTTCTTTTTGATAGTATTG
GTCTCGTTTAGAGTATCAGTCTAGTCTGAACCCAACTACTCTTTCTTTCTCTCCTGCGGACCCTT
CGCCTGCTAACAAGGAGAACTTAGCACAACTAACAACTTCTGCTC
Found at i:610515 original size:18 final size:18
Alignment explanation
Indices: 610492--610551 Score: 78
Period size: 18 Copynumber: 3.7 Consensus size: 18
610482 CATAGATGTT
610492 GAGTGAGAATTTAACGTA
1 GAGTGAGAATTTAACGTA
610510 GAGTGAGAATTTAAC---
1 GAGTGAGAATTTAACGTA
610525 ---TGAGAATTTAACGTA
1 GAGTGAGAATTTAACGTA
610540 GAGTGAGAATTT
1 GAGTGAGAATTT
610552 CACATAGAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
12 12 0.33
18 24 0.67
ACGTcount: A:0.38, C:0.05, G:0.27, T:0.30
Consensus pattern (18 bp):
GAGTGAGAATTTAACGTA
Left flanking sequence: Indices 609992 -- 610491
ACATTTCTAAACGTAGTAAGCGATTCAGAACTTGATGAAGATTCCTTTTCTCCAGATTCTCTATC
CGAATTTTCACTTTCATTCGAAGCCGATGAGACCCCAAAAAAAAAAGCTGCGGGCAGCTCTATAA
AAGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAATCA
AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAA
TCAAAAAGGAGAAAAAGAATCAGATTTTTTTGATTTCTTCTTCTTATCACAAATAAAGTGATCAA
TAGGAACGAAAAGACTAAAAGAAGTAGAAATTCAGGGGTGGTGCTTCTATCTGATGCCAGAAAAC
GCCCACAGGCAAGAGCTAGACCTGCACCGAAAGCCCTAAGAATTTGCTCAAGGATTTTTGTACCA
ACATTTCCGAATAACGTACCAGCATTTCCTAATAACATAGATGTT
Right flanking sequence: Indices 610552 -- 611051
CACATAGAAGTAGAGTGAGAATTTACCCTTCGCCAGGGTAAGAGTTTCAAATTTGTGATCATGAT
TTAAGGTTTTGTTCTTTCGTGAATCCTTTAAGTTCTTTTGAATCCTTTAAGTTGTTTTGTGAACT
CAACATTGTCAACGGGGCTAACATATATAAATTATCTTCCCCATTTTTTATGTGTCTTTTTGCTC
ACTGAACACTAACTGAATTATTGCTTCAATTCTGTTTATTCTTCTTTTCCCCTAAAGGGTGTCTT
ATTATTTATGTGTATTTTTGCTTCTCTTATGATTTTTGCTACTTTCTTTTTGATAGTATTGGTCT
CGTTTAGAGTATCAGTCTAGTCTGAACCCAACTACTCTTTCTTTCTCTCCTGCGGACCCTTCGCC
TGCTAACAAGGAGAACTTAGCACAACTAACAACTTCTGCTCGGGCCTCTATCAAGCGAGGCCCTT
CGCTACATATACAGGACTCGAGAGCAACAGAAAGATTTTTCAATG
Found at i:610531 original size:30 final size:30
Alignment explanation
Indices: 610495--610551 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
610485 AGATGTTGAG
610495 TGAGAATTTAACGTAGAGTGAGAATTTAAC
1 TGAGAATTTAACGTAGAGTGAGAATTTAAC
610525 TGAGAATTTAACGTAGAGTGAGAATTT
1 TGAGAATTTAACGTAGAGTGAGAATTT
610552 CACATAGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.32
Consensus pattern (30 bp):
TGAGAATTTAACGTAGAGTGAGAATTTAAC
Left flanking sequence: Indices 609995 -- 610494
TTTCTAAACGTAGTAAGCGATTCAGAACTTGATGAAGATTCCTTTTCTCCAGATTCTCTATCCGA
ATTTTCACTTTCATTCGAAGCCGATGAGACCCCAAAAAAAAAAGCTGCGGGCAGCTCTATAAAAG
AGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAATCAAAA
AGGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAATCA
AAAAGGAGAAAAAGAATCAGATTTTTTTGATTTCTTCTTCTTATCACAAATAAAGTGATCAATAG
GAACGAAAAGACTAAAAGAAGTAGAAATTCAGGGGTGGTGCTTCTATCTGATGCCAGAAAACGCC
CACAGGCAAGAGCTAGACCTGCACCGAAAGCCCTAAGAATTTGCTCAAGGATTTTTGTACCAACA
TTTCCGAATAACGTACCAGCATTTCCTAATAACATAGATGTTGAG
Right flanking sequence: Indices 610552 -- 611051
CACATAGAAGTAGAGTGAGAATTTACCCTTCGCCAGGGTAAGAGTTTCAAATTTGTGATCATGAT
TTAAGGTTTTGTTCTTTCGTGAATCCTTTAAGTTCTTTTGAATCCTTTAAGTTGTTTTGTGAACT
CAACATTGTCAACGGGGCTAACATATATAAATTATCTTCCCCATTTTTTATGTGTCTTTTTGCTC
ACTGAACACTAACTGAATTATTGCTTCAATTCTGTTTATTCTTCTTTTCCCCTAAAGGGTGTCTT
ATTATTTATGTGTATTTTTGCTTCTCTTATGATTTTTGCTACTTTCTTTTTGATAGTATTGGTCT
CGTTTAGAGTATCAGTCTAGTCTGAACCCAACTACTCTTTCTTTCTCTCCTGCGGACCCTTCGCC
TGCTAACAAGGAGAACTTAGCACAACTAACAACTTCTGCTCGGGCCTCTATCAAGCGAGGCCCTT
CGCTACATATACAGGACTCGAGAGCAACAGAAAGATTTTTCAATG
Found at i:610559 original size:18 final size:18
Alignment explanation
Indices: 610492--610559 Score: 67
Period size: 18 Copynumber: 4.1 Consensus size: 18
610482 CATAGATGTT
*
610492 GAGTGAGAATTTAACGTA
1 GAGTGAGAATTTAACATA
610510 GAGTGAGAATTTAAC---
1 GAGTGAGAATTTAACATA
*
610525 ---TGAGAATTTAACGTA
1 GAGTGAGAATTTAACATA
*
610540 GAGTGAGAATTTCACATA
1 GAGTGAGAATTTAACATA
610558 GA
1 GA
610560 AGTAGAGTGA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
12 12 0.29
18 30 0.71
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (18 bp):
GAGTGAGAATTTAACATA
Left flanking sequence: Indices 609992 -- 610491
ACATTTCTAAACGTAGTAAGCGATTCAGAACTTGATGAAGATTCCTTTTCTCCAGATTCTCTATC
CGAATTTTCACTTTCATTCGAAGCCGATGAGACCCCAAAAAAAAAAGCTGCGGGCAGCTCTATAA
AAGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAATCA
AAAAGGAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAA
TCAAAAAGGAGAAAAAGAATCAGATTTTTTTGATTTCTTCTTCTTATCACAAATAAAGTGATCAA
TAGGAACGAAAAGACTAAAAGAAGTAGAAATTCAGGGGTGGTGCTTCTATCTGATGCCAGAAAAC
GCCCACAGGCAAGAGCTAGACCTGCACCGAAAGCCCTAAGAATTTGCTCAAGGATTTTTGTACCA
ACATTTCCGAATAACGTACCAGCATTTCCTAATAACATAGATGTT
Right flanking sequence: Indices 610560 -- 611059
AGTAGAGTGAGAATTTACCCTTCGCCAGGGTAAGAGTTTCAAATTTGTGATCATGATTTAAGGTT
TTGTTCTTTCGTGAATCCTTTAAGTTCTTTTGAATCCTTTAAGTTGTTTTGTGAACTCAACATTG
TCAACGGGGCTAACATATATAAATTATCTTCCCCATTTTTTATGTGTCTTTTTGCTCACTGAACA
CTAACTGAATTATTGCTTCAATTCTGTTTATTCTTCTTTTCCCCTAAAGGGTGTCTTATTATTTA
TGTGTATTTTTGCTTCTCTTATGATTTTTGCTACTTTCTTTTTGATAGTATTGGTCTCGTTTAGA
GTATCAGTCTAGTCTGAACCCAACTACTCTTTCTTTCTCTCCTGCGGACCCTTCGCCTGCTAACA
AGGAGAACTTAGCACAACTAACAACTTCTGCTCGGGCCTCTATCAAGCGAGGCCCTTCGCTACAT
ATACAGGACTCGAGAGCAACAGAAAGATTTTTCAATGGGTGCTTG
Found at i:610653 original size:21 final size:20
Alignment explanation
Indices: 610627--610679 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
610617 TTAAGGTTTT
610627 GTTCTTTCGTGAATCCTTTAA
1 GTTCTTT-GTGAATCCTTTAA
610648 GTTCTTT-TGAATCCTTTAA
1 GTTCTTTGTGAATCCTTTAA
*
610667 GTTGTTTTGTGAA
1 GTT-CTTTGTGAA
610680 CTCAACATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 15 0.52
20 3 0.10
21 11 0.38
ACGTcount: A:0.19, C:0.13, G:0.17, T:0.51
Consensus pattern (20 bp):
GTTCTTTGTGAATCCTTTAA
Left flanking sequence: Indices 610127 -- 610626
AAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAATCAAAAAG
GAGAAAAAGGAATCCAGAATGAACAATCGAAAAAGGCAAGAAAACAGACAAAGGAAGAAATCAAA
AAGGAGAAAAAGAATCAGATTTTTTTGATTTCTTCTTCTTATCACAAATAAAGTGATCAATAGGA
ACGAAAAGACTAAAAGAAGTAGAAATTCAGGGGTGGTGCTTCTATCTGATGCCAGAAAACGCCCA
CAGGCAAGAGCTAGACCTGCACCGAAAGCCCTAAGAATTTGCTCAAGGATTTTTGTACCAACATT
TCCGAATAACGTACCAGCATTTCCTAATAACATAGATGTTGAGTGAGAATTTAACGTAGAGTGAG
AATTTAACTGAGAATTTAACGTAGAGTGAGAATTTCACATAGAAGTAGAGTGAGAATTTACCCTT
CGCCAGGGTAAGAGTTTCAAATTTGTGATCATGATTTAAGGTTTT
Right flanking sequence: Indices 610680 -- 611179
CTCAACATTGTCAACGGGGCTAACATATATAAATTATCTTCCCCATTTTTTATGTGTCTTTTTGC
TCACTGAACACTAACTGAATTATTGCTTCAATTCTGTTTATTCTTCTTTTCCCCTAAAGGGTGTC
TTATTATTTATGTGTATTTTTGCTTCTCTTATGATTTTTGCTACTTTCTTTTTGATAGTATTGGT
CTCGTTTAGAGTATCAGTCTAGTCTGAACCCAACTACTCTTTCTTTCTCTCCTGCGGACCCTTCG
CCTGCTAACAAGGAGAACTTAGCACAACTAACAACTTCTGCTCGGGCCTCTATCAAGCGAGGCCC
TTCGCTACATATACAGGACTCGAGAGCAACAGAAAGATTTTTCAATGGGTGCTTGGTATCAAACC
TAACCCCCGGACTCAGAACCTTCCCAACCCTATTTGAACTGAATTCCAGGGGTTCCTTCCCCGGA
GAGAGGAGATATGTAATAAGAGGAGACTGAGCTGAACTACTACAT
Found at i:613640 original size:32 final size:32
Alignment explanation
Indices: 613604--613669 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
613594 CTTTACTATA
613604 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
613636 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
613668 GC
1 GC
613670 TACGCAACGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (32 bp):
GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 613104 -- 613603
CTTAAGGCTGACTGAAGCTTCCCTCTTTCCTGGTCTCCATTACTATTAGTATTAGGAAGAAAAAC
GTCGTCTAGGCGTTCGGAGCGGAAAGAAGAACAGCTACGCCACTTAAGTAATATCGTAAAGAAGA
ACTGCTACGCAACTCTCCTTAGAACTATATAGAAGAAAGAAGAACTGCTACGCAACTAATAGAAT
AGTTCTATTAGAATAGGCATATTTGATGATGTCGCTTCCTTTTCTTTTCATTAATGAGGAACGAA
GGTAGCGACATCTAGCCTATTCTCATTTCACTATTCTATTATTCGAATTGAACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 613670 -- 614169
TACGCAACGTCTGGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGC
GCCCTTTCCCTGACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTG
AGAACAAGGAAGGCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAT
AAGAAATGTATTAACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGT
AAGTCTTTCTCCTTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGC
AACTCGACTGAGCGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTC
GAGCTGCTTTTAGCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACG
TTCAATGAGATGATGTCGCTTCAGCAACTCGACTTACAGTCTTTT
Found at i:613681 original size:32 final size:32
Alignment explanation
Indices: 613604--613681 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
613594 CTTTACTATA
**
613604 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
**
613636 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
613668 GC-TACGCAACGTCT
1 GCGTA-GCAACGTCT
613682 GGCTTCGTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 2 0.05
32 41 0.95
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (32 bp):
GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 613104 -- 613603
CTTAAGGCTGACTGAAGCTTCCCTCTTTCCTGGTCTCCATTACTATTAGTATTAGGAAGAAAAAC
GTCGTCTAGGCGTTCGGAGCGGAAAGAAGAACAGCTACGCCACTTAAGTAATATCGTAAAGAAGA
ACTGCTACGCAACTCTCCTTAGAACTATATAGAAGAAAGAAGAACTGCTACGCAACTAATAGAAT
AGTTCTATTAGAATAGGCATATTTGATGATGTCGCTTCCTTTTCTTTTCATTAATGAGGAACGAA
GGTAGCGACATCTAGCCTATTCTCATTTCACTATTCTATTATTCGAATTGAACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 613682 -- 614181
GGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGCGCCCTTTCCCTG
ACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTGAGAACAAGGAAG
GCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAATAAGAAATGTATT
AACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGTAAGTCTTTCTCC
TTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGCAACTCGACTGAG
CGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTCGAGCTGCTTTTA
GCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACGTTCAATGAGATG
ATGTCGCTTCAGCAACTCGACTTACAGTCTTTTTGCTTTTCGCTC
Found at i:614892 original size:15 final size:15
Alignment explanation
Indices: 614872--614900 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
614862 AATATCATAG
614872 TTCTAATACGCTTCC
1 TTCTAATACGCTTCC
614887 TTCTAATACGCTTC
1 TTCTAATACGCTTC
614901 TAATACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.31, G:0.07, T:0.41
Consensus pattern (15 bp):
TTCTAATACGCTTCC
Left flanking sequence: Indices 614372 -- 614871
CCCTTTTCGTTCAATGAGAATAGGAGAAAGGGGAAATGAGAACTGCTACGCTCCAACCCTTCCAA
CAAGTGTAGTTGCGTAGCTCCAACCCTTGTTCTTCTTTCCGCGCCTCTCTTTCCCTCTTCATACC
TGATTCGAACTGCGTAGCAACAAATTGAACTATTCTATGAGAACAGCGTAGCGGAAACCCTTACA
GTCAAGTTGCTTCTACGCCTCTCTTTCCTTACTATAAACTTAGCAACACAGGAAGGCAAGTTCTT
TATAATACGATTAATAATAATCAATGAGAACTGCTACGCTTATCATACTTAAAGCTTTCCACTCC
TCTCGCATTCGCTCGAGTTTCTTTCCACTCCTTACAGTCTCGTTCAAGCTGCTTCGCTTCTATTA
TTATAGGAAGGAGAGGGGAATAAGAAGAACTGCTACTAATAGTTTTCTTAGAACAGCGTAGCAAC
TAATTGAACTATTCTATGAGAACAGCTACGCAACAAATATCATAG
Right flanking sequence: Indices 614901 -- 615400
TAATACTTAAAGCTTGGAACTCCTTACAGTCTCGTTGCTTTCCACTCCTTACAGTCTCTAAGGAA
GGCAAGTGATTTATAATACGATTAAGAATATGAAATGAAAGTGAAATGAGAACTGCTACGCAACG
AGACAGAGAGAATAGGAGAAAGGGGAACTGCTACGCTTAGAATTGAATAGTTCAAACTGCGTAGC
TCCTCTCACTTCATTTTAAAGCTTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCA
CTCCTCTCACATTCGAATAGTGAAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAAC
TCTCTTTCCTTAGCAGTCTCGTTGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCA
ATTCGAACAAGGCTTGGAACTCCTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAA
CTGCTACGCTGTTCTTCTTTCCACTCCTTACAGTCTCGTTGCTTG
Found at i:615647 original size:26 final size:25
Alignment explanation
Indices: 615618--615673 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
615608 CTAAGTTTAT
* *
615618 AGTCTCGTTGCTTTCCACTCCTTAGC
1 AGTCTCGTTGCTTGCAACTCCTTA-C
*
615644 AGTCTCGTTGCTTGGAACTCCTTAC
1 AGTCTCGTTGCTTGCAACTCCTTAC
615669 AGTCT
1 AGTCT
615674 TTAGTAGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (25 bp):
AGTCTCGTTGCTTGCAACTCCTTAC
Left flanking sequence: Indices 615118 -- 615617
TTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCACTCCTCTCACATTCGAATAGTG
AAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAACTCTCTTTCCTTAGCAGTCTCGT
TGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCAATTCGAACAAGGCTTGGAACTC
CTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAACTGCTACGCTGTTCTTCTTTCC
ACTCCTTACAGTCTCGTTGCTTGGAACTCCTGTAAGTCAAGTGTCTTTTCGCTCCTGTTCTTCAT
TTTCCCTTAGCAACACAGGAAGGCAAGTGATTTATAATACGATTAAGAATATTCAATTCCAGTTC
ATAGGCCTTAACAAAACTGAAATGAGAATAGGAGAATAGTGAAACTAATAGAATCGTTCAATTCG
AATAGGAGAATAGTTCCATTCGAACAGCTACGCTTCTAAGTTTAT
Right flanking sequence: Indices 615674 -- 616173
TTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAAGAGTAGGAGAAAGCAAGAAAG
AACTATCTGACTTCGCGGATAAGAAATCAAGGACTTGTCGGTAGATCAGCTAGCTCGCGCTCTAG
TCTTTCATTGATCTTTTCTGCCCGGACCATCGCTTTAGCGCCTTTAGCAACTACTATAGCCCAGC
CCGGACCATCGCTTATACCGGAAGCGACATCATCAAATATGCCTATTCGAATTTCACTATTCTAT
TATTCTAATGGAACTATTCTATTAGTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTT
ACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAA
TTGAACTATGATATTAGAAGCGTAGCTGTTCTTCTTTCGCCCCCTCTCACATTCGTTCGAGTGGC
TCCGCTCCTCTCTCTAAATAGAAAGACTCAACGAGGAGTATGAGA
Found at i:617015 original size:22 final size:22
Alignment explanation
Indices: 616990--617079 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
616980 CTTTTATGCC
616990 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
617012 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
**
617034 TATGAGAATTGAACTATTCTAT
1 TATGAGAATTGAACTATGATAT
* *
617056 TATTCA-AATGGAACTATGATAT
1 TA-TGAGAATTGAACTATGATAT
617078 TA
1 TA
617080 GTTGCGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 59 0.97
23 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (22 bp):
TATGAGAATTGAACTATGATAT
Left flanking sequence: Indices 616490 -- 616989
TTAATTAGAACTGCGTAGCAGTTCTAAGTTTATAGTCAAGTTGCTTTTCGCGCTTTTCCTTTTAA
AGCTTCTTCCACGCCTCTCACATTCGTTCGAGCTACCTTCGTTCCGTCATTAATGAAAAGAAAAG
GGAGTTTACTTGCTTTTATGAAATGAAAAGGGATGCGCTAAGGCAAGCTACGCTGTTCTTCTTCC
GCTTAGAGTAAGGAAATAAACTCCCTTCCTCTAACAAGTAAGTCTTTCTCCTTGCGGAATAGTTC
AATTCGAATAGGCTTTCCACTCCTTTCCTTGCAGTCAAGCAGCTTCGCGCCTTTCGCCCCCTCTC
TCTAAGCTAAACGCCCCTCTCCTGTAAGTCTTTTTGCTTTCAGCTTCTTTCCCTGCGGTCAAGTG
ACTTCGTTCCTCTCCAAACTTTATAGTCAAGCAAGCGGCTTGGAACTTCCTTCTTTATAGTAAAG
GAGAGGAGTGGAAAGCCTATTCTAAGCGACATCATCTTTTATGCC
Right flanking sequence: Indices 617080 -- 617579
GTTGCGTAGCAGTTCTAAGAAAACTCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTT
CCATTTAAAGCGATCTTCTTCTAAGCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTAT
AAGGAATTGATGTAGCAGTTAAAGAATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCT
ACTCCTTTTCCCTGAACTCGTAGCTTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCC
AAGTCCGATCGATCTTAAAGCTACGAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCC
TTATAGTCTATCGAGTTGCTTTTAGCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCT
CTCCTGTAAGTCGAGTCGCTTTTCAGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAA
CAAGTATAGAAGCGTAGCTGTTTTAAAGAGATACCCGTTCGTGAA
Found at i:617649 original size:20 final size:21
Alignment explanation
Indices: 617604--617650 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
617594 CACTCACTAG
*
617604 ATAGAAGCGTAGCTGTTTTAA
1 ATAGAAGCGTAGCTGTTTCAA
*
617625 ATAGAAGCGTAGCTG-TTCGA
1 ATAGAAGCGTAGCTGTTTCAA
617645 ATAGAA
1 ATAGAA
617651 TAGTCTCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.28
Consensus pattern (21 bp):
ATAGAAGCGTAGCTGTTTCAA
Left flanking sequence: Indices 617104 -- 617603
TCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTTCCATTTAAAGCGATCTTCTTCTAA
GCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTATAAGGAATTGATGTAGCAGTTAAAG
AATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCTACTCCTTTTCCCTGAACTCGTAGC
TTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCCAAGTCCGATCGATCTTAAAGCTAC
GAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCCTTATAGTCTATCGAGTTGCTTTTA
GCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCTCTCCTGTAAGTCGAGTCGCTTTTC
AGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAACAAGTATAGAAGCGTAGCTGTTTT
AAAGAGATACCCGTTCGTGAACCTTACCTAAGGTTCACTCACTAG
Right flanking sequence: Indices 617651 -- 618150
TAGTCTCGTTGCTTTTCGCCTCTCGCATTCGTTATTAGTTGCTACGCTGTTCTTCTTTCACTCCT
CTCTTCCCCTAAGGCCATTTGCGGCGCATTTAACGCGGCGACAGCCCCCCGCATACCCAATATAT
CATGAGAGTGGCGGAACGGGGCTTAAAAGCGCCGGAAATGGGCTGTTAGCTTTCCAACCTTATAA
TCAAGCAAGTGAGGAAGGGCGTTCCATGCCTATTCGAATAGAACTATTCTAAGCGTAGCAGTTCT
AAGAAAACTCTTACTTACAGGAGAGGCGCTTTAGCCGCTCGACCGTAGGGAGAGGAGTGAAAGCC
ATTTGAGTTTTCGCTTGCTTGATTATTTGGAAAGGGGCGGAAATACGGTTGTTTACTTGCTTACT
TTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTAGCTAGA
CCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGC
Found at i:618573 original size:27 final size:27
Alignment explanation
Indices: 618535--618610 Score: 152
Period size: 27 Copynumber: 2.8 Consensus size: 27
618525 AACTGCTACG
618535 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
618562 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
618589 CTCCTCTTCCTCTCTGTTCTTC
1 CTCCTCTTCCTCTCTGTTCTTC
618611 AACACTCCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.03, C:0.42, G:0.04, T:0.51
Consensus pattern (27 bp):
CTCCTCTTCCTCTCTGTTCTTCTTTCA
Left flanking sequence: Indices 618035 -- 618534
CTTACTTTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTA
GCTAGACCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGCTGACTGAATCCATA
AACCGTCAAAGTCACCGTCACTGGTACTTTTGTGACTCTATTCTATAGGTAGGTATAGGTATTGG
TGGAGCTTGCGTAATGTAGTTGTAGTTAAGACGAAAGGGGAAGGAAGCTCGACCGGGTAGACGTA
ATGAAGCTCGACCGGGGGCGAAGCTGTTTGAACGAGAACGAATGTGAGGGGCGAAGCTACTCGAC
TGTAGGGAGAGGGGCGCTGTTCTAAGAAAACTCTTACTATAAGGAGAGGCGCGAAGACAAGCCGC
GAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCGGCGGCAA
CCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACG
Right flanking sequence: Indices 618611 -- 619110
AACACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTC
AAGCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCT
TGAAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACC
AGCCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATG
CCTATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCCTATTCGAATTGAACTATT
CTATTATTCGAATTTCACTATGATATTATGAGAATTGAACTATTCTATTAGTTGCGTAGCAGTTC
TAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTC
ATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAA
Found at i:618943 original size:22 final size:22
Alignment explanation
Indices: 618918--618985 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
618908 GATATTAGCC
618918 TATTCGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
** **
618940 TATTCGAATTTCACTATGATAT
1 TATTCGAATTGAACTATTCTAT
**
618962 TATGAGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
618984 TA
1 TA
618986 GTTGCGTAGC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (22 bp):
TATTCGAATTGAACTATTCTAT
Left flanking sequence: Indices 618418 -- 618917
AAGCCGCGAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCG
GCGGCAACCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACGCTCCTCTTCCTCT
CTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCAA
CACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTCAA
GCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCTTG
AAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACCAG
CCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATGCC
TATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCC
Right flanking sequence: Indices 618986 -- 619485
GTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTA
GTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAAGGCAA
GAAGTAAGGCCATTTGCGGCACATTTAACACGGCTTAAACCTCCCTCATTACCAATCTCACATTA
GAGTTCGGAAAGGGGGCTTAAAAGCATCGCAAATTGGGTGTTAGCTTTCCAACGAGGGTGGATTG
AATGAAGCGACATCATCAAATATGCCTATGAGAATGGAACTATGATATTAGTTGTTCTCAGTCTT
CAATTTGCCCTTTCTTGCTTAGTAAGGCGCAACGGCTTTCGCGCAGCTGCTACGCAACTAATTGA
ACTATGATATTAGTTCAAGTCAAGGTTGTAGAAAGAAAGTCTACCGGACGTGGGAAAACTGACTT
CTAGTGAGGGAGGGCGAGCTTTAATTGAAGTAGGAGCGTTTAGCC
Found at i:621485 original size:34 final size:34
Alignment explanation
Indices: 621441--621516 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
621431 GCTGAAAAGA
621441 AGAACAGCGTAGCAACAAAT-TGAATAGTTCAATG
1 AGAACAGCGTAGCAACAAATAT-AATAGTTCAATG
* * *
621475 AGAACTGCGTAGCAACAAATATCATAGTTCAATT
1 AGAACAGCGTAGCAACAAATATAATAGTTCAATG
*
621509 CGAACAGC
1 AGAACAGC
621517 TACGCTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (34 bp):
AGAACAGCGTAGCAACAAATATAATAGTTCAATG
Left flanking sequence: Indices 620941 -- 621440
CAAGAAGTAAGGAAATGAGACGAGTGAAAGCAACTCGCCTTAGAACTGCTACGCTTAGAATTGTA
CTTTCCAATATGCCTTGTTCTAATATCATAGTGAAATGAGAATAGGCTAATTGCGTAAAGGAAGG
AGATGAAAGAAGCTCGACTAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTAC
TCTAACAAGTCAGTCTTTCTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTA
AAAGCGAGCAGTCTGGAACTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATT
GATTAAGAGAAGAAAAGAGGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTT
CTTTTGCTTGTTTTCGCTACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGT
TCAATAACTATACTATACTATAAGGAAAGAAAGGAGCTGAAAAGA
Right flanking sequence: Indices 621517 -- 622016
TACGCTTATAATTGAATAGTTCCATTAGAATAATAGAATAGTGAAATGAGAATAGGCTAATATCA
TAGTTCAATTAGAATAATATCATAGTTCCATTTGAATAATAGAATAGTTCAATTAGTTGCGTAGC
AGTTCTAATTAAAGAACTATTAGTAGCAGTTCTTCTTATTCCCCTCTTCTGTGACAGCTATTTCC
TCGTCTGGGAAGCAATCCTTAAACTCATGTTCCTCCTCTCTGGGTGCCTAGGTATCCACCCGTTC
GCCTTTCCTCCTTTGAACCTCGCCCCTGGTCAGACCGGATTTTGCCTTCAAACCTCAACTCAAAA
ATGAGAAAAGCAACTCGCTTTCCTATAAGGAGAGGAGCGTTTAGCAAAAAGACTGTAAGGAGAGG
AGCTGAAAGAAGCTTTAAAAGGAAAGGCGTTCCATGCCTATTCTAATAGAACTATTCCACAAGGG
AGTTTACTTGCTTACTTGTTAGAGTACGGAAGCGACATCATCTAA
Found at i:621599 original size:22 final size:22
Alignment explanation
Indices: 621574--621637 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
621564 GAGAATAGGC
621574 TAATATCATAGTTCAATTAGAA
1 TAATATCATAGTTCAATTAGAA
* *
621596 TAATATCATAGTTCCATTTGAA
1 TAATATCATAGTTCAATTAGAA
**
621618 TAATAGAATAGTTCAATTAG
1 TAATATCATAGTTCAATTAG
621638 TTGCGTAGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (22 bp):
TAATATCATAGTTCAATTAGAA
Left flanking sequence: Indices 621074 -- 621573
TGAAAGAAGCTCGACTAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTACTCT
AACAAGTCAGTCTTTCTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTAAAA
GCGAGCAGTCTGGAACTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATTGAT
TAAGAGAAGAAAAGAGGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTTCTT
TTGCTTGTTTTCGCTACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGTTCA
ATAACTATACTATACTATAAGGAAAGAAAGGAGCTGAAAAGAAGAACAGCGTAGCAACAAATTGA
ATAGTTCAATGAGAACTGCGTAGCAACAAATATCATAGTTCAATTCGAACAGCTACGCTTATAAT
TGAATAGTTCCATTAGAATAATAGAATAGTGAAATGAGAATAGGC
Right flanking sequence: Indices 621638 -- 622137
TTGCGTAGCAGTTCTAATTAAAGAACTATTAGTAGCAGTTCTTCTTATTCCCCTCTTCTGTGACA
GCTATTTCCTCGTCTGGGAAGCAATCCTTAAACTCATGTTCCTCCTCTCTGGGTGCCTAGGTATC
CACCCGTTCGCCTTTCCTCCTTTGAACCTCGCCCCTGGTCAGACCGGATTTTGCCTTCAAACCTC
AACTCAAAAATGAGAAAAGCAACTCGCTTTCCTATAAGGAGAGGAGCGTTTAGCAAAAAGACTGT
AAGGAGAGGAGCTGAAAGAAGCTTTAAAAGGAAAGGCGTTCCATGCCTATTCTAATAGAACTATT
CCACAAGGGAGTTTACTTGCTTACTTGTTAGAGTACGGAAGCGACATCATCTAATAGAACTATTC
CACAAGGAAGCTTTAAAAGGAAGGGCGTGGAAAGCTACTCGAATGAAGAATCTTTCCGAGGAGTG
ACCCCAAGTAGAAGTTAGAGAAGGAATTGATCCTTTCCTGAAAGA
Found at i:634014 original size:15 final size:15
Alignment explanation
Indices: 633994--634022 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
633984 TTCTCATTTC
633994 TTTATCACATCACGG
1 TTTATCACATCACGG
634009 TTTATCACATCACG
1 TTTATCACATCACG
634023 AGGTGCCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (15 bp):
TTTATCACATCACGG
Left flanking sequence: Indices 633494 -- 633993
TCACTTACCCTACGAACTACAACGCGCCTTACTGGAAGAAGAACTCCAGCTTGTCAAAAAAGAAT
TGCTCATCAAACTCGGACTACCACGGAGTCACAAAAGAGAGAATGTCTATGATTCAAATAATGTA
TGGATAGACACACGACCAATAGATGTAATAGACTTAGGAAGTCAAGATGCTACCACTATTTTAAA
ATATGAACTATTGAGGAATAATGATGAATCAGTCAGTCAGTCCACTACTGAAGAGAAAAAGACAA
TAACTCTATACAATAACAAGCCGAAGAAGGCGAAGAAAGCGAAAGATAGAAGAAAATACCATAGA
CCAAAACCTGATGAATAAGAGCAAAAACGATAAGTGAGCGGGCCCTACCCAACCTCCCTACTCTC
CGGTTCATCCGTTAGACCGGTCCACATCCAAAGAGCAAAAACGATAACCAAGCACCAAATGTCAA
AATCCTTGCCCCCGATTTATTCCCTGTTCAGTCGCTTCTCATTTC
Right flanking sequence: Indices 634023 -- 634522
AGGTGCCTTGTCTTCCTGAATCTGAACACCTATATGCACTCCATGCGCCCAACTGTACTTAAAAA
AAATGGGCTTATTAAACTGCTTGTTCCACTCAAAAACCTCTCCGACTCTTTTGTCGTAGAGGCTT
AAGAGGCGATGTAAATAAAGTACAAACCCAAGGACCAATAAGAAAAAGAAGAATACAATCAAAAT
TGCGTAATAGGAGGCTATGTTACTGACAAAATAGGAAAAAACTTCTGATACCGGCACTCCTTTTT
CTCCCGATGGATTTTGTTCCACGGAATGAATCGAGAAAGCAAGGGCACGCCCAAGAATGGAATGA
ATCGAGGAACTAAAGACGTTTCCAATACCGATAGCTGATGGATTTCGCGCCATGGAATGAATCGA
GGAACTAAGGACGTTTCCAATACCGATAGCTGCTCCCGCTGAAGCAATTGTAGCAGCTCCTGCAC
CGATTGATTTTGCACCTTCTAACATTTGGTTTGGTTCATTTTTTG
Found at i:640244 original size:32 final size:32
Alignment explanation
Indices: 640208--640273 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
640198 CTTTACTATA
640208 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
640240 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
640272 GC
1 GC
640274 TACGCAACGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (32 bp):
GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 639708 -- 640207
AACTGCTACGCTTAGAATAGAATAGTTCCATTCGAACAGCGTAGCAACTAATAACGAATGTGAGA
GACGCGAAGCAACGAGACTATAAACTTAGAACAGCTACGCCACTTAAGTAATATCGTAAAGAAGA
ACTGCTACGCAACTCTCCTTAGAACTATATAGAAGAAAGAAGAACTGCTACGCAACTAATAGAAT
AGTTCTATTAGAATAGGCATATTTGATGATGTCGCTTCCTTTTCTTTTCATTAATGAGGAACGAA
GGTAGCGACATCTAGCCTATTCTCATTTCACTATTCTATTATTCGAATTTCACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 640274 -- 640773
TACGCAACGTCTGGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGC
GCCCTTTCCCTGACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTG
AGAACAAGGAAGGCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAT
AAGAAATGTATTAACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGT
AAGTCTTTCTCCTTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGC
AACTCGACTGAGCGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTC
GAGCTGCTTTTAGCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACG
TTCAATGAGATGATGTCGCTTCAGCAACTCGACTTACAGTCTTTT
Found at i:640285 original size:32 final size:32
Alignment explanation
Indices: 640208--640285 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
640198 CTTTACTATA
**
640208 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
**
640240 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
640272 GC-TACGCAACGTCT
1 GCGTA-GCAACGTCT
640286 GGCTTCGTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 2 0.05
32 41 0.95
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (32 bp):
GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 639708 -- 640207
AACTGCTACGCTTAGAATAGAATAGTTCCATTCGAACAGCGTAGCAACTAATAACGAATGTGAGA
GACGCGAAGCAACGAGACTATAAACTTAGAACAGCTACGCCACTTAAGTAATATCGTAAAGAAGA
ACTGCTACGCAACTCTCCTTAGAACTATATAGAAGAAAGAAGAACTGCTACGCAACTAATAGAAT
AGTTCTATTAGAATAGGCATATTTGATGATGTCGCTTCCTTTTCTTTTCATTAATGAGGAACGAA
GGTAGCGACATCTAGCCTATTCTCATTTCACTATTCTATTATTCGAATTTCACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 640286 -- 640785
GGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGCGCCCTTTCCCTG
ACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTGAGAACAAGGAAG
GCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAATAAGAAATGTATT
AACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGTAAGTCTTTCTCC
TTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGCAACTCGACTGAG
CGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTCGAGCTGCTTTTA
GCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACGTTCAATGAGATG
ATGTCGCTTCAGCAACTCGACTTACAGTCTTTTTGCTTTTCGCTC
Found at i:641496 original size:15 final size:15
Alignment explanation
Indices: 641476--641504 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
641466 AATATCATAG
641476 TTCTAATACGCTTCC
1 TTCTAATACGCTTCC
641491 TTCTAATACGCTTC
1 TTCTAATACGCTTC
641505 TAATACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.31, G:0.07, T:0.41
Consensus pattern (15 bp):
TTCTAATACGCTTCC
Left flanking sequence: Indices 640976 -- 641475
CCCTTTTCGTTCAATGAGAATAGGAGAAAGGGGAAATGAGAACTGCTACGCTCCAACCCTTCCAA
CAAGTGTAGTTGCGTAGCTCCAACCCTTGTTCTTCTTTCCGCGCCTCTCTTTCCCTCTTCATACC
TGATTCGAACTGCGTAGCAACAAATTGAACTATTCTATGAGAACAGCGTAGCGGAAACCCTTACA
GTCAAGTTGCTTCTACGCCTCTCTTTCCTTACTATAAACTTAGCAACACAGGAAGGCAAGTTCTT
TATAATACGATTAATAATAATCAATGAGAACTGCTACGCTTATCATACTTAAAGCTTTCCACTCC
TCTCGCATTCGCTCGAGTTTCTTTCCACTCCTTACAGTCTCGTTCAAGCTGCTTCGCTTCTATTA
TTATAGGAAGGAGAGGGGAATAAGAAGAACTGCTACTAATAGTTTTCTTAGAACAGCGTAGCAAC
TAATTGAACTATTCTATGAGAACAGCTACGCAACAAATATCATAG
Right flanking sequence: Indices 641505 -- 642004
TAATACTTAAAGCTTGGAACTCCTTACAGTCTCGTTGCTTTCCACTCCTTACAGTCTCTAAGGAA
GGCAAGTGATTTATAATACGATTAAGAATATGAAATGAAAGTGAAATGAGAACTGCTACGCAACG
AGACAGAGAGAATAGGAGAAAGGGGAACTGCTACGCTTAGAATTGAATAGTTCAAACTGCGTAGC
TCCTCTCACTTCATTTTAAAGCTTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCA
CTCCTCTCACATTCGAATAGTGAAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAAC
TCTCTTTCCTTAGCAGTCTCGTTGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCA
ATTCGAACAAGGCTTGGAACTCCTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAA
CTGCTACGCTGTTCTTCTTTCCACTCCTTACAGTCTCGTTGCTTG
Found at i:642251 original size:26 final size:25
Alignment explanation
Indices: 642222--642277 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
642212 CTAAGTTTAT
* *
642222 AGTCTCGTTGCTTTCCACTCCTTAGC
1 AGTCTCGTTGCTTGCAACTCCTTA-C
*
642248 AGTCTCGTTGCTTGGAACTCCTTAC
1 AGTCTCGTTGCTTGCAACTCCTTAC
642273 AGTCT
1 AGTCT
642278 TTAGTAGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (25 bp):
AGTCTCGTTGCTTGCAACTCCTTAC
Left flanking sequence: Indices 641722 -- 642221
TTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCACTCCTCTCACATTCGAATAGTG
AAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAACTCTCTTTCCTTAGCAGTCTCGT
TGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCAATTCGAACAAGGCTTGGAACTC
CTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAACTGCTACGCTGTTCTTCTTTCC
ACTCCTTACAGTCTCGTTGCTTGGAACTCCTGTAAGTCAAGTGTCTTTTCGCTCCTGTTCTTCAT
TTTCCCTTAGCAACACAGGAAGGCAAGTGATTTATAATACGATTAAGAATATTCAATTCCAGTTC
ATAGGCCTTAACAAAACTGAAATGAGAATAGGAGAATAGTGAAACTAATAGAATCGTTCAATTCG
AATAGGAGAATAGTTCCATTCGAACAGCTACGCTTCTAAGTTTAT
Right flanking sequence: Indices 642278 -- 642777
TTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAAGAGTAGGAGAAAGCAAGAAAG
AACTATCTGACTTCGCGGATAAGAAATCAAGGACTTGTCGGTAGATCAGCTAGCTCGCGCTCTAG
TCTTTCATTGATCTTTTCTGCCCGGACCATCGCTTTAGCGCCTTTAGCAACTACTATAGCCCAGC
CCGGACCATCGCTTATACCGGAAGCGACATCATCAAATATGCCTATTCGAATTTCACTATTCTAT
TATTCTAATGGAACTATTCTATTAGTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTT
ACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAA
TTGAACTATGATATTAGAAGCGTAGCTGTTCTTCTTTCGCCCCCTCTCACATTCGTTCGAGTGGC
TCCGCTCCTCTCTCTAAATAGAAAGACTCAACGAGGAGTATGAGA
Found at i:643619 original size:22 final size:22
Alignment explanation
Indices: 643594--643683 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
643584 CTTTTATGCC
643594 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
643616 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
**
643638 TATGAGAATTGAACTATTCTAT
1 TATGAGAATTGAACTATGATAT
* *
643660 TATTCA-AATGGAACTATGATAT
1 TA-TGAGAATTGAACTATGATAT
643682 TA
1 TA
643684 GTTGCGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 59 0.97
23 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (22 bp):
TATGAGAATTGAACTATGATAT
Left flanking sequence: Indices 643094 -- 643593
TTAATTAGAACTGCGTAGCAGTTCTAAGTTTATAGTCAAGTTGCTTTTCGCGCTTTTCCTTTTAA
AGCTTCTTCCACGCCTCTCACATTCGTTCGAGCTACCTTCGTTCCGTCATTAATGAAAAGAAAAG
GGAGTTTACTTGCTTTTATGAAATGAAAAGGGATGCGCTAAGGCAAGCTACGCTGTTCTTCTTCC
GCTTAGAGTAAGGAAATAAACTCCCTTCCTCTAACAAGTAAGTCTTTCTCCTTGCGGAATAGTTC
AATTCGAATAGGCTTTCCACTCCTTTCCTTGCAGTCAAGCAGCTTCGCGCCTTTCGCCCCCTCTC
TCTAAGCTAAACGCCCCTCTCCTGTAAGTCTTTTTGCTTTCAGCTTCTTTCCCTGCGGTCAAGTG
ACTTCGTTCCTCTCCAAACTTTATAGTCAAGCAAGCGGCTTGGAACTTCCTTCTTTATAGTAAAG
GAGAGGAGTGGAAAGCCTATTCTAAGCGACATCATCTTTTATGCC
Right flanking sequence: Indices 643684 -- 644183
GTTGCGTAGCAGTTCTAAGAAAACTCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTT
CCATTTAAAGCGATCTTCTTCTAAGCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTAT
AAGGAATTGATGTAGCAGTTAAAGAATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCT
ACTCCTTTTCCCTGAACTCGTAGCTTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCC
AAGTCCGATCGATCTTAAAGCTACGAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCC
TTATAGTCTATCGAGTTGCTTTTAGCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCT
CTCCTGTAAGTCGAGTCGCTTTTCAGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAA
CAAGTATAGAAGCGTAGCTGTTTTAAAGAGATACCCGTTCGTGAA
Found at i:644253 original size:20 final size:21
Alignment explanation
Indices: 644208--644254 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
644198 CACTCACTAG
*
644208 ATAGAAGCGTAGCTGTTTTAA
1 ATAGAAGCGTAGCTGTTTCAA
*
644229 ATAGAAGCGTAGCTG-TTCGA
1 ATAGAAGCGTAGCTGTTTCAA
644249 ATAGAA
1 ATAGAA
644255 TAGTCTCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.28
Consensus pattern (21 bp):
ATAGAAGCGTAGCTGTTTCAA
Left flanking sequence: Indices 643708 -- 644207
TCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTTCCATTTAAAGCGATCTTCTTCTAA
GCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTATAAGGAATTGATGTAGCAGTTAAAG
AATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCTACTCCTTTTCCCTGAACTCGTAGC
TTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCCAAGTCCGATCGATCTTAAAGCTAC
GAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCCTTATAGTCTATCGAGTTGCTTTTA
GCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCTCTCCTGTAAGTCGAGTCGCTTTTC
AGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAACAAGTATAGAAGCGTAGCTGTTTT
AAAGAGATACCCGTTCGTGAACCTTACCTAAGGTTCACTCACTAG
Right flanking sequence: Indices 644255 -- 644754
TAGTCTCGTTGCTTTTCGCCTCTCGCATTCGTTATTAGTTGCTACGCTGTTCTTCTTTCACTCCT
CTCTTCCCCTAAGGCCATTTGCGGCGCATTTAACGCGGCGACAGCCCCCCGCATACCCAATATAT
CATGAGAGTGGCGGAACGGGGCTTAAAAGCGCCGGAAATGGGCTGTTAGCTTTCCAACCTTATAA
TCAAGCAAGTGAGGAAGGGCGTTCCATGCCTATTCGAATAGAACTATTCTAAGCGTAGCAGTTCT
AAGAAAACTCTTACTTACAGGAGAGGCGCTTTAGCCGCTCGACCGTAGGGAGAGGAGTGAAAGCC
ATTTGAGTTTTCGCTTGCTTGATTATTTGGAAAGGGGCGGAAATACGGTTGTTTACTTGCTTACT
TTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTAGCTAGA
CCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGC
Found at i:645177 original size:27 final size:27
Alignment explanation
Indices: 645139--645214 Score: 152
Period size: 27 Copynumber: 2.8 Consensus size: 27
645129 AACTGCTACG
645139 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
645166 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
645193 CTCCTCTTCCTCTCTGTTCTTC
1 CTCCTCTTCCTCTCTGTTCTTC
645215 AACACTCCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.03, C:0.42, G:0.04, T:0.51
Consensus pattern (27 bp):
CTCCTCTTCCTCTCTGTTCTTCTTTCA
Left flanking sequence: Indices 644639 -- 645138
CTTACTTTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTA
GCTAGACCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGCTGACTGAATCCATA
AACCGTCAAAGTCACCGTCACTGGTACTTTTGTGACTCTATTCTATAGGTAGGTATAGGTATTGG
TGGAGCTTGCGTAATGTAGTTGTAGTTAAGACGAAAGGGGAAGGAAGCTCGACCGGGTAGACGTA
ATGAAGCTCGACCGGGGGCGAAGCTGTTTGAACGAGAACGAATGTGAGGGGCGAAGCTACTCGAC
TGTAGGGAGAGGGGCGCTGTTCTAAGAAAACTCTTACTATAAGGAGAGGCGCGAAGACAAGCCGC
GAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCGGCGGCAA
CCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACG
Right flanking sequence: Indices 645215 -- 645714
AACACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTC
AAGCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCT
TGAAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACC
AGCCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATG
CCTATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCCTATTCGAATTGAACTATT
CTATTATTCGAATTTCACTATGATATTATGAGAATTGAACTATTCTATTAGTTGCGTAGCAGTTC
TAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTC
ATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAA
Found at i:645547 original size:22 final size:22
Alignment explanation
Indices: 645522--645589 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
645512 GATATTAGCC
645522 TATTCGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
** **
645544 TATTCGAATTTCACTATGATAT
1 TATTCGAATTGAACTATTCTAT
**
645566 TATGAGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
645588 TA
1 TA
645590 GTTGCGTAGC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (22 bp):
TATTCGAATTGAACTATTCTAT
Left flanking sequence: Indices 645022 -- 645521
AAGCCGCGAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCG
GCGGCAACCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACGCTCCTCTTCCTCT
CTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCAA
CACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTCAA
GCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCTTG
AAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACCAG
CCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATGCC
TATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCC
Right flanking sequence: Indices 645590 -- 646089
GTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTA
GTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAAGGCAA
GAAGTAAGGCCATTTGCGGCACATTTAACACGGCTTAAACCTCCCTCATTACCAATCTCACATTA
GAGTTCGGAAAGGGGGCTTAAAAGCATCGCAAATTGGGTGTTAGCTTTCCAACGAGGGTGGATTG
AATGAAGCGACATCATCAAATATGCCTATGAGAATGGAACTATGATATTAGTTGTTCTCAGTCTT
CAATTTGCCCTTTCTTGCTTAGTAAGGCGCAACGGCTTTCGCGCAGCTGCTACGCAACTAATTGA
ACTATGATATTAGTTCAAGTCAAGGTTGTAGAAAGAAAGTCTACCGGACGTGGGAAAACTGACTT
CTAGTGAGGGAGGGCGAGCTTTAATTGAAGTAGGAGCGTTTAGCC
Found at i:648089 original size:34 final size:34
Alignment explanation
Indices: 648045--648120 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
648035 GCTGAAAAGA
648045 AGAACAGCGTAGCAACAAAT-TGAATAGTTCAATG
1 AGAACAGCGTAGCAACAAATAT-AATAGTTCAATG
* * *
648079 AGAACTGCGTAGCAACAAATATCATAGTTCAATT
1 AGAACAGCGTAGCAACAAATATAATAGTTCAATG
*
648113 CGAACAGC
1 AGAACAGC
648121 TACGCTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (34 bp):
AGAACAGCGTAGCAACAAATATAATAGTTCAATG
Left flanking sequence: Indices 647545 -- 648044
CAAGAAGTAAGGAAATGAGACGAGTGAAAGCAACTCGCCTTAGAACTGCTACGCTTAGAATTGTA
CTTTCCAATATGCCTTGTTCTAATATCATAGTGAAATGAGAATAGGCTAATTGCGTAAAGGAAGG
AGATGAAAGAAGCTCGACTAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTAC
TCTAACAAGTCAGTCTTTCTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTA
AAAGCGAGCAGTCTGGAACTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATT
GATTAAGAGAAGAAAAGAGGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTT
CTTTTGCTTGTTTTCGCTACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGT
TCAATAACTATACTATACTATAAGGAAAGAAAGGAGCTGAAAAGA
Right flanking sequence: Indices 648121 -- 648620
TACGCTTATAATTGAATAGTTCCATTAGAATAATAGAATAGTTCAATTCGAATAGGCAAGAAGAG
CATTTGAAATAGGAGCAGAGTCTGTCACGTGCAGCCTACTCTCTTCGCTCCTCTCCTGTAAGTAA
AAACGAGTGGTCAACACTCCTCTCCTTACAGTCGAGTGGCCCGGGGCTCCTCTCGCATTCGCTCG
AGCAGCTTTCGCTCCTTTCCTTTTTATGGCTTTCGCGCCTTAGTCTTCAGAGTTGCTAAACGCTC
CTTCCCTTAACTGGAAAGTTGTCAACATTCCTCTCCTGTAAGTCTCGTTGCTTGAAGCTATTCCT
GATCTGATTACCGATTCGCTCTGAAGGAAGCTTTCGGCGCCTTTCCTTCCGCTCCTTTCCAACTA
TAATAAAGAAAAGCTCAAACGCAAGTAGCTCCACTCCTCTCCTTACGTCGAGTGACTTTTAGCTC
CTTTCTTAGTCAAGAAAGTGGCTCCGCACCTCTCGCATTCGCTCG
Found at i:648153 original size:22 final size:22
Alignment explanation
Indices: 648128--648174 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
648118 AGCTACGCTT
* *
648128 ATAATTGAATAGTTCCATTAGA
1 ATAATAGAATAGTTCAATTAGA
*
648150 ATAATAGAATAGTTCAATTCGA
1 ATAATAGAATAGTTCAATTAGA
648172 ATA
1 ATA
648175 GGCAAGAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (22 bp):
ATAATAGAATAGTTCAATTAGA
Left flanking sequence: Indices 647628 -- 648127
TCTAATATCATAGTGAAATGAGAATAGGCTAATTGCGTAAAGGAAGGAGATGAAAGAAGCTCGAC
TAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTACTCTAACAAGTCAGTCTTT
CTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTAAAAGCGAGCAGTCTGGAA
CTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATTGATTAAGAGAAGAAAAGA
GGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTTCTTTTGCTTGTTTTCGCT
ACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGTTCAATAACTATACTATAC
TATAAGGAAAGAAAGGAGCTGAAAAGAAGAACAGCGTAGCAACAAATTGAATAGTTCAATGAGAA
CTGCGTAGCAACAAATATCATAGTTCAATTCGAACAGCTACGCTT
Right flanking sequence: Indices 648175 -- 648674
GGCAAGAAGAGCATTTGAAATAGGAGCAGAGTCTGTCACGTGCAGCCTACTCTCTTCGCTCCTCT
CCTGTAAGTAAAAACGAGTGGTCAACACTCCTCTCCTTACAGTCGAGTGGCCCGGGGCTCCTCTC
GCATTCGCTCGAGCAGCTTTCGCTCCTTTCCTTTTTATGGCTTTCGCGCCTTAGTCTTCAGAGTT
GCTAAACGCTCCTTCCCTTAACTGGAAAGTTGTCAACATTCCTCTCCTGTAAGTCTCGTTGCTTG
AAGCTATTCCTGATCTGATTACCGATTCGCTCTGAAGGAAGCTTTCGGCGCCTTTCCTTCCGCTC
CTTTCCAACTATAATAAAGAAAAGCTCAAACGCAAGTAGCTCCACTCCTCTCCTTACGTCGAGTG
ACTTTTAGCTCCTTTCTTAGTCAAGAAAGTGGCTCCGCACCTCTCGCATTCGCTCGAGCCGCTAA
AGCGCCTCTCCTTTCTTTCCTTCTTTCCGCGCCTCTCGCATTCGC
Found at i:649459 original size:25 final size:25
Alignment explanation
Indices: 649425--649496 Score: 144
Period size: 25 Copynumber: 2.9 Consensus size: 25
649415 CAATTCTAGC
649425 TTGAATACCTCTCTCAAACGAGCAA
1 TTGAATACCTCTCTCAAACGAGCAA
649450 TTGAATACCTCTCTCAAACGAGCAA
1 TTGAATACCTCTCTCAAACGAGCAA
649475 TTGAATACCTCTCTCAAACGAG
1 TTGAATACCTCTCTCAAACGAG
649497 AAATATCATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (25 bp):
TTGAATACCTCTCTCAAACGAGCAA
Left flanking sequence: Indices 648925 -- 649424
ACTCAAATGGCTTTCCACTCCTCTCGCATTCGCTCGAGCAGCTAAAGCTCCTCTCTTGTAAGCGG
GTCAAGAGAGTTGCTAAACACTCCTTTCGCTTCGACCATCGAATTTCCGCTATGGGAATAGCTCC
AAACCAAAGACGACAAGTTTGAAATCGATTCTCAACTGGGGCTTACTTCCTTTTCCCTCTCACTT
CGTACCTTCGCTTCGTCATCAAATATGCCTATGAGAATTGCACTTTTCTTCTCTTAAGAAATTAA
GAGTTTTCAAATCTATTATAAGCGTAGCAGTTCTTCTTTCGGAGTTCTTCCCCGCTTAGGACAGT
AAGGGGAAGTAGGGATATTCCGATTCCTTCGCTTTTGGGTCTTTGAGACTTACACTTCTCTTCAC
TCATGAAGACCCAAAACCTCTTTATGTGGAAAATTCTCCCTAGAGTCGAGACTAAGAGGAATGTA
TAAAGCAATGCTTCCATAGATTCGATCGTGGTTTACAATTCTAGC
Right flanking sequence: Indices 649497 -- 649996
AAATATCATAAGAGAAGAAAAGCGACTCGACTAGAAACTTAGAACAGCTACGCAACTAATTTCAC
TATTCCACGGTAGCTCGCCTAAAAGTTTTCAATCTTAATGCAGGCAAGGCATATCTCGTTGAATA
GTGCTTTTTCTGTTGTATTTGTTTTAACAACGAAAAAAGCTAAGGAGAAGGGCGTTCCATGCCTT
AAGGGATCATAGGGCTAAGGAGAGGAGCGTTTAGCCATAAAAAGGAGAGGCGCTTTAGCTTTACT
TACAGGAGAGGAGTGGGGAAAGGCGTTCCATGCCTATTCTAATAGAACTATTCCGCAATCTTTCA
TCATTAATCTTCGGAGGCGAATTACATATTCATATCCACAATCAAAGAATTTGTGAGACTATTGA
ATTTGCTTTCATTTTGGAAGTCAAATTGGTGAAATGAAAAACTACGAAGAGGAATTCACATGGAT
TTAGGAAGGGCCTGCTGTATTTGTGTACAAGCTAAAGTTTTTTGA
Found at i:675912 original size:32 final size:32
Alignment explanation
Indices: 675876--675941 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
675866 CTTTACTATA
675876 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
675908 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
675940 GC
1 GC
675942 TACGCAACGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (32 bp):
GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 675376 -- 675875
CTTAAGGCTGACTGAAGCTTCCCTCTTTCCTGGTCTCCATTACTATTAGTATTAGGAAGAAAAAC
GTCGTCTAGGCGTTCGGAGCGGAAAGAAGAACAGCTACGCCACTTAAGTAATATCGTAAAGAAGA
ACTGCTACGCAACTCTCCTTAGAACTATATAGAAGAAAGAAGAACTGCTACGCAACTAATAGAAT
AGTTCTATTAGAATAGGCATATTTGATGATGTCGCTTCCTTTTCTTTTCATTAATGAGGAACGAA
GGTAGCGACATCTAGCCTATTCTCATTTCACTATTCTATTATTCGAATTGAACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 675942 -- 676441
TACGCAACGTCTGGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGC
GCCCTTTCCCTGACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTG
AGAACAAGGAAGGCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAT
AAGAAATGTATTAACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGT
AAGTCTTTCTCCTTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGC
AACTCGACTGAGCGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTC
GAGCTGCTTTTAGCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACG
TTCAATGAGATGATGTCGCTTCAGCAACTCGACTTACAGTCTTTT
Found at i:675953 original size:32 final size:32
Alignment explanation
Indices: 675876--675953 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
675866 CTTTACTATA
**
675876 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
**
675908 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
675940 GC-TACGCAACGTCT
1 GCGTA-GCAACGTCT
675954 GGCTTCGTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 2 0.05
32 41 0.95
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (32 bp):
GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 675376 -- 675875
CTTAAGGCTGACTGAAGCTTCCCTCTTTCCTGGTCTCCATTACTATTAGTATTAGGAAGAAAAAC
GTCGTCTAGGCGTTCGGAGCGGAAAGAAGAACAGCTACGCCACTTAAGTAATATCGTAAAGAAGA
ACTGCTACGCAACTCTCCTTAGAACTATATAGAAGAAAGAAGAACTGCTACGCAACTAATAGAAT
AGTTCTATTAGAATAGGCATATTTGATGATGTCGCTTCCTTTTCTTTTCATTAATGAGGAACGAA
GGTAGCGACATCTAGCCTATTCTCATTTCACTATTCTATTATTCGAATTGAACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 675954 -- 676453
GGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGCGCCCTTTCCCTG
ACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTGAGAACAAGGAAG
GCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAATAAGAAATGTATT
AACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGTAAGTCTTTCTCC
TTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGCAACTCGACTGAG
CGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTCGAGCTGCTTTTA
GCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACGTTCAATGAGATG
ATGTCGCTTCAGCAACTCGACTTACAGTCTTTTTGCTTTTCGCTC
Found at i:677164 original size:15 final size:15
Alignment explanation
Indices: 677144--677172 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
677134 AATATCATAG
677144 TTCTAATACGCTTCC
1 TTCTAATACGCTTCC
677159 TTCTAATACGCTTC
1 TTCTAATACGCTTC
677173 TAATACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.31, G:0.07, T:0.41
Consensus pattern (15 bp):
TTCTAATACGCTTCC
Left flanking sequence: Indices 676644 -- 677143
CCCTTTTCGTTCAATGAGAATAGGAGAAAGGGGAAATGAGAACTGCTACGCTCCAACCCTTCCAA
CAAGTGTAGTTGCGTAGCTCCAACCCTTGTTCTTCTTTCCGCGCCTCTCTTTCCCTCTTCATACC
TGATTCGAACTGCGTAGCAACAAATTGAACTATTCTATGAGAACAGCGTAGCGGAAACCCTTACA
GTCAAGTTGCTTCTACGCCTCTCTTTCCTTACTATAAACTTAGCAACACAGGAAGGCAAGTTCTT
TATAATACGATTAATAATAATCAATGAGAACTGCTACGCTTATCATACTTAAAGCTTTCCACTCC
TCTCGCATTCGCTCGAGTTTCTTTCCACTCCTTACAGTCTCGTTCAAGCTGCTTCGCTTCTATTA
TTATAGGAAGGAGAGGGGAATAAGAAGAACTGCTACTAATAGTTTTCTTAGAACAGCGTAGCAAC
TAATTGAACTATTCTATGAGAACAGCTACGCAACAAATATCATAG
Right flanking sequence: Indices 677173 -- 677672
TAATACTTAAAGCTTGGAACTCCTTACAGTCTCGTTGCTTTCCACTCCTTACAGTCTCTAAGGAA
GGCAAGTGATTTATAATACGATTAAGAATATGAAATGAAAGTGAAATGAGAACTGCTACGCAACG
AGACAGAGAGAATAGGAGAAAGGGGAACTGCTACGCTTAGAATTGAATAGTTCAAACTGCGTAGC
TCCTCTCACTTCATTTTAAAGCTTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCA
CTCCTCTCACATTCGAATAGTGAAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAAC
TCTCTTTCCTTAGCAGTCTCGTTGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCA
ATTCGAACAAGGCTTGGAACTCCTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAA
CTGCTACGCTGTTCTTCTTTCCACTCCTTACAGTCTCGTTGCTTG
Found at i:677919 original size:26 final size:25
Alignment explanation
Indices: 677890--677945 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
677880 CTAAGTTTAT
* *
677890 AGTCTCGTTGCTTTCCACTCCTTAGC
1 AGTCTCGTTGCTTGCAACTCCTTA-C
*
677916 AGTCTCGTTGCTTGGAACTCCTTAC
1 AGTCTCGTTGCTTGCAACTCCTTAC
677941 AGTCT
1 AGTCT
677946 TTAGTAGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (25 bp):
AGTCTCGTTGCTTGCAACTCCTTAC
Left flanking sequence: Indices 677390 -- 677889
TTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCACTCCTCTCACATTCGAATAGTG
AAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAACTCTCTTTCCTTAGCAGTCTCGT
TGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCAATTCGAACAAGGCTTGGAACTC
CTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAACTGCTACGCTGTTCTTCTTTCC
ACTCCTTACAGTCTCGTTGCTTGGAACTCCTGTAAGTCAAGTGTCTTTTCGCTCCTGTTCTTCAT
TTTCCCTTAGCAACACAGGAAGGCAAGTGATTTATAATACGATTAAGAATATTCAATTCCAGTTC
ATAGGCCTTAACAAAACTGAAATGAGAATAGGAGAATAGTGAAACTAATAGAATCGTTCAATTCG
AATAGGAGAATAGTTCCATTCGAACAGCTACGCTTCTAAGTTTAT
Right flanking sequence: Indices 677946 -- 678445
TTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAAGAGTAGGAGAAAGCAAGAAAG
AACTATCTGACTTCGCGGATAAGAAATCAAGGACTTGTCGGTAGATCAGCTAGCTCGCGCTCTAG
TCTTTCATTGATCTTTTCTGCCCGGACCATCGCTTTAGCGCCTTTAGCAACTACTATAGCCCAGC
CCGGACCATCGCTTATACCGGAAGCGACATCATCAAATATGCCTATTCGAATTTCACTATTCTAT
TATTCTAATGGAACTATTCTATTAGTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTT
ACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAA
TTGAACTATGATATTAGAAGCGTAGCTGTTCTTCTTTCGCCCCCTCTCACATTCGTTCGAGTGGC
TCCGCTCCTCTCTCTAAATAGAAAGACTCAACGAGGAGTATGAGA
Found at i:679287 original size:22 final size:22
Alignment explanation
Indices: 679262--679351 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
679252 CTTTTATGCC
679262 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
679284 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
**
679306 TATGAGAATTGAACTATTCTAT
1 TATGAGAATTGAACTATGATAT
* *
679328 TATTCA-AATGGAACTATGATAT
1 TA-TGAGAATTGAACTATGATAT
679350 TA
1 TA
679352 GTTGCGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 59 0.97
23 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (22 bp):
TATGAGAATTGAACTATGATAT
Left flanking sequence: Indices 678762 -- 679261
TTAATTAGAACTGCGTAGCAGTTCTAAGTTTATAGTCAAGTTGCTTTTCGCGCTTTTCCTTTTAA
AGCTTCTTCCACGCCTCTCACATTCGTTCGAGCTACCTTCGTTCCGTCATTAATGAAAAGAAAAG
GGAGTTTACTTGCTTTTATGAAATGAAAAGGGATGCGCTAAGGCAAGCTACGCTGTTCTTCTTCC
GCTTAGAGTAAGGAAATAAACTCCCTTCCTCTAACAAGTAAGTCTTTCTCCTTGCGGAATAGTTC
AATTCGAATAGGCTTTCCACTCCTTTCCTTGCAGTCAAGCAGCTTCGCGCCTTTCGCCCCCTCTC
TCTAAGCTAAACGCCCCTCTCCTGTAAGTCTTTTTGCTTTCAGCTTCTTTCCCTGCGGTCAAGTG
ACTTCGTTCCTCTCCAAACTTTATAGTCAAGCAAGCGGCTTGGAACTTCCTTCTTTATAGTAAAG
GAGAGGAGTGGAAAGCCTATTCTAAGCGACATCATCTTTTATGCC
Right flanking sequence: Indices 679352 -- 679851
GTTGCGTAGCAGTTCTAAGAAAACTCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTT
CCATTTAAAGCGATCTTCTTCTAAGCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTAT
AAGGAATTGATGTAGCAGTTAAAGAATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCT
ACTCCTTTTCCCTGAACTCGTAGCTTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCC
AAGTCCGATCGATCTTAAAGCTACGAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCC
TTATAGTCTATCGAGTTGCTTTTAGCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCT
CTCCTGTAAGTCGAGTCGCTTTTCAGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAA
CAAGTATAGAAGCGTAGCTGTTTTAAAGAGATACCCGTTCGTGAA
Found at i:679921 original size:20 final size:21
Alignment explanation
Indices: 679876--679922 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
679866 CACTCACTAG
*
679876 ATAGAAGCGTAGCTGTTTTAA
1 ATAGAAGCGTAGCTGTTTCAA
*
679897 ATAGAAGCGTAGCTG-TTCGA
1 ATAGAAGCGTAGCTGTTTCAA
679917 ATAGAA
1 ATAGAA
679923 TAGTCTCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.28
Consensus pattern (21 bp):
ATAGAAGCGTAGCTGTTTCAA
Left flanking sequence: Indices 679376 -- 679875
TCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTTCCATTTAAAGCGATCTTCTTCTAA
GCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTATAAGGAATTGATGTAGCAGTTAAAG
AATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCTACTCCTTTTCCCTGAACTCGTAGC
TTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCCAAGTCCGATCGATCTTAAAGCTAC
GAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCCTTATAGTCTATCGAGTTGCTTTTA
GCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCTCTCCTGTAAGTCGAGTCGCTTTTC
AGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAACAAGTATAGAAGCGTAGCTGTTTT
AAAGAGATACCCGTTCGTGAACCTTACCTAAGGTTCACTCACTAG
Right flanking sequence: Indices 679923 -- 680422
TAGTCTCGTTGCTTTTCGCCTCTCGCATTCGTTATTAGTTGCTACGCTGTTCTTCTTTCACTCCT
CTCTTCCCCTAAGGCCATTTGCGGCGCATTTAACGCGGCGACAGCCCCCCGCATACCCAATATAT
CATGAGAGTGGCGGAACGGGGCTTAAAAGCGCCGGAAATGGGCTGTTAGCTTTCCAACCTTATAA
TCAAGCAAGTGAGGAAGGGCGTTCCATGCCTATTCGAATAGAACTATTCTAAGCGTAGCAGTTCT
AAGAAAACTCTTACTTACAGGAGAGGCGCTTTAGCCGCTCGACCGTAGGGAGAGGAGTGAAAGCC
ATTTGAGTTTTCGCTTGCTTGATTATTTGGAAAGGGGCGGAAATACGGTTGTTTACTTGCTTACT
TTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTAGCTAGA
CCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGC
Found at i:680845 original size:27 final size:27
Alignment explanation
Indices: 680807--680882 Score: 152
Period size: 27 Copynumber: 2.8 Consensus size: 27
680797 AACTGCTACG
680807 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
680834 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
680861 CTCCTCTTCCTCTCTGTTCTTC
1 CTCCTCTTCCTCTCTGTTCTTC
680883 AACACTCCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.03, C:0.42, G:0.04, T:0.51
Consensus pattern (27 bp):
CTCCTCTTCCTCTCTGTTCTTCTTTCA
Left flanking sequence: Indices 680307 -- 680806
CTTACTTTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTA
GCTAGACCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGCTGACTGAATCCATA
AACCGTCAAAGTCACCGTCACTGGTACTTTTGTGACTCTATTCTATAGGTAGGTATAGGTATTGG
TGGAGCTTGCGTAATGTAGTTGTAGTTAAGACGAAAGGGGAAGGAAGCTCGACCGGGTAGACGTA
ATGAAGCTCGACCGGGGGCGAAGCTGTTTGAACGAGAACGAATGTGAGGGGCGAAGCTACTCGAC
TGTAGGGAGAGGGGCGCTGTTCTAAGAAAACTCTTACTATAAGGAGAGGCGCGAAGACAAGCCGC
GAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCGGCGGCAA
CCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACG
Right flanking sequence: Indices 680883 -- 681382
AACACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTC
AAGCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCT
TGAAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACC
AGCCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATG
CCTATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCCTATTCGAATTGAACTATT
CTATTATTCGAATTTCACTATGATATTATGAGAATTGAACTATTCTATTAGTTGCGTAGCAGTTC
TAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTC
ATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAA
Found at i:681215 original size:22 final size:22
Alignment explanation
Indices: 681190--681257 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
681180 GATATTAGCC
681190 TATTCGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
** **
681212 TATTCGAATTTCACTATGATAT
1 TATTCGAATTGAACTATTCTAT
**
681234 TATGAGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
681256 TA
1 TA
681258 GTTGCGTAGC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (22 bp):
TATTCGAATTGAACTATTCTAT
Left flanking sequence: Indices 680690 -- 681189
AAGCCGCGAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCG
GCGGCAACCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACGCTCCTCTTCCTCT
CTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCAA
CACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTCAA
GCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCTTG
AAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACCAG
CCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATGCC
TATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCC
Right flanking sequence: Indices 681258 -- 681757
GTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTA
GTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAAGGCAA
GAAGTAAGGCCATTTGCGGCACATTTAACACGGCTTAAACCTCCCTCATTACCAATCTCACATTA
GAGTTCGGAAAGGGGGCTTAAAAGCATCGCAAATTGGGTGTTAGCTTTCCAACGAGGGTGGATTG
AATGAAGCGACATCATCAAATATGCCTATGAGAATGGAACTATGATATTAGTTGTTCTCAGTCTT
CAATTTGCCCTTTCTTGCTTAGTAAGGCGCAACGGCTTTCGCGCAGCTGCTACGCAACTAATTGA
ACTATGATATTAGTTCAAGTCAAGGTTGTAGAAAGAAAGTCTACCGGACGTGGGAAAACTGACTT
CTAGTGAGGGAGGGCGAGCTTTAATTGAAGTAGGAGCGTTTAGCC
Found at i:683757 original size:34 final size:34
Alignment explanation
Indices: 683713--683788 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
683703 GCTGAAAAGA
683713 AGAACAGCGTAGCAACAAAT-TGAATAGTTCAATG
1 AGAACAGCGTAGCAACAAATAT-AATAGTTCAATG
* * *
683747 AGAACTGCGTAGCAACAAATATCATAGTTCAATT
1 AGAACAGCGTAGCAACAAATATAATAGTTCAATG
*
683781 CGAACAGC
1 AGAACAGC
683789 TACGCTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (34 bp):
AGAACAGCGTAGCAACAAATATAATAGTTCAATG
Left flanking sequence: Indices 683213 -- 683712
CAAGAAGTAAGGAAATGAGACGAGTGAAAGCAACTCGCCTTAGAACTGCTACGCTTAGAATTGTA
CTTTCCAATATGCCTTGTTCTAATATCATAGTGAAATGAGAATAGGCTAATTGCGTAAAGGAAGG
AGATGAAAGAAGCTCGACTAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTAC
TCTAACAAGTCAGTCTTTCTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTA
AAAGCGAGCAGTCTGGAACTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATT
GATTAAGAGAAGAAAAGAGGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTT
CTTTTGCTTGTTTTCGCTACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGT
TCAATAACTATACTATACTATAAGGAAAGAAAGGAGCTGAAAAGA
Right flanking sequence: Indices 683789 -- 684288
TACGCTTATAATTGAATAGTTCCATTAGAATAATAGAATAGTTCAATTCGAATAGGCAAGAAGAG
CATTTGAAATAGGAGCAGAGTCTGTCACGTGCAGCCTACTCTCTTCGCTCCTCTCCTGTAAGTAA
AAACGAGTGGTCAACACTCCTCTCCTTACAGTCGAGTGGCCCGGGGCTCCTCTCGCATTCGCTCG
AGCAGCTTTCGCTCCTTTCCTTTTTATGGCTTTCGCGCCTTAGTCTTCAGAGTTGCTAAACGCTC
CTTCCCTTAACTGGAAAGTTGTCAACATTCCTCTCCTGTAAGTCTCGTTGCTTGAAGCTATTCCT
GATCTGATTACCGATTCGCTCTGAAGGAAGCTTTCGGCGCCTTTCCTTCCGCTCCTTTCCAACTA
TAATAAAGAAAAGCTCAAACGCAAGTAGCTCCACTCCTCTCCTTACGTCGAGTGACTTTTAGCTC
CTTTCTTAGTCAAGAAAGTGGCTCCGCACCTCTCGCATTCGCTCG
Found at i:683821 original size:22 final size:22
Alignment explanation
Indices: 683796--683842 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
683786 AGCTACGCTT
* *
683796 ATAATTGAATAGTTCCATTAGA
1 ATAATAGAATAGTTCAATTAGA
*
683818 ATAATAGAATAGTTCAATTCGA
1 ATAATAGAATAGTTCAATTAGA
683840 ATA
1 ATA
683843 GGCAAGAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (22 bp):
ATAATAGAATAGTTCAATTAGA
Left flanking sequence: Indices 683296 -- 683795
TCTAATATCATAGTGAAATGAGAATAGGCTAATTGCGTAAAGGAAGGAGATGAAAGAAGCTCGAC
TAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTACTCTAACAAGTCAGTCTTT
CTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTAAAAGCGAGCAGTCTGGAA
CTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATTGATTAAGAGAAGAAAAGA
GGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTTCTTTTGCTTGTTTTCGCT
ACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGTTCAATAACTATACTATAC
TATAAGGAAAGAAAGGAGCTGAAAAGAAGAACAGCGTAGCAACAAATTGAATAGTTCAATGAGAA
CTGCGTAGCAACAAATATCATAGTTCAATTCGAACAGCTACGCTT
Right flanking sequence: Indices 683843 -- 684342
GGCAAGAAGAGCATTTGAAATAGGAGCAGAGTCTGTCACGTGCAGCCTACTCTCTTCGCTCCTCT
CCTGTAAGTAAAAACGAGTGGTCAACACTCCTCTCCTTACAGTCGAGTGGCCCGGGGCTCCTCTC
GCATTCGCTCGAGCAGCTTTCGCTCCTTTCCTTTTTATGGCTTTCGCGCCTTAGTCTTCAGAGTT
GCTAAACGCTCCTTCCCTTAACTGGAAAGTTGTCAACATTCCTCTCCTGTAAGTCTCGTTGCTTG
AAGCTATTCCTGATCTGATTACCGATTCGCTCTGAAGGAAGCTTTCGGCGCCTTTCCTTCCGCTC
CTTTCCAACTATAATAAAGAAAAGCTCAAACGCAAGTAGCTCCACTCCTCTCCTTACGTCGAGTG
ACTTTTAGCTCCTTTCTTAGTCAAGAAAGTGGCTCCGCACCTCTCGCATTCGCTCGAGCCGCTAA
AGCGCCTCTCCTTTCTTTCCTTCTTTCCGCGCCTCTCGCATTCGC
Done.