123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_044153
Parameters: 2 7 7 80 10 50 500
Length:  684857

Tables:   1   2   

This is table  1  of  2  ( 202 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6175--6249	39	1.9	39	91	0	123	16	38	16	29	1.90
6173--6260	39	2.3	39	83	0	122	19	39	14	26	1.90
13798--13977	36	4.9	37	79	8	206	19	30	14	36	1.91
13809--13977	73	2.3	73	97	0	320	19	28	15	36	1.92
28724--28845	37	3.0	42	82	11	182	28	29	31	10	1.90
28857--28891	17	2.1	17	94	0	61	8	28	17	45	1.77
32236--32271	17	2.1	17	89	0	54	47	5	27	19	1.72
32735--32780	23	2.0	23	82	0	56	36	23	19	19	1.95
33520--33594	20	3.6	20	75	16	80	29	32	16	22	1.95
33561--33606	20	2.3	20	80	0	56	41	26	15	17	1.88
33803--33896	18	5.3	18	65	14	70	34	17	41	7	1.77
33813--33903	17	5.2	17	65	15	60	31	20	38	8	1.84
33805--33917	35	3.2	35	100	0	226	30	18	42	7	1.79
33823--33913	17	5.2	17	65	15	60	29	20	40	8	1.83
34716--34773	30	1.9	31	85	3	82	18	29	18	32	1.96
47889--47926	19	2.0	19	89	0	58	23	18	34	23	1.96
48209--48276	22	3.1	22	95	0	118	44	8	13	33	1.74
48969--49052	29	2.9	29	85	1	116	9	44	13	33	1.76
49275--49343	28	2.5	28	88	4	86	24	34	20	20	1.96
49290--49345	28	2.0	28	100	0	112	21	32	21	25	1.98
62691--62728	19	2.0	19	89	0	58	39	18	13	28	1.88
64955--65089	42	3.3	42	83	10	208	28	28	31	11	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65101--65133	17	1.9	17	93	0	57	6	33	15	45	1.70
68569--68626	30	1.9	31	85	3	82	32	18	29	18	1.96
93184--93267	42	2.0	42	97	0	159	28	27	33	10	1.90
104230--104264	17	2.1	17	94	0	61	45	17	28	8	1.77
104276--104397	37	3.0	42	82	11	182	10	31	29	28	1.90
123848--123933	38	2.3	36	82	8	100	17	27	15	39	1.89
129359--129405	24	2.0	24	86	0	67	23	27	21	27	1.99
145102--145140	19	2.1	19	85	9	53	53	12	25	7	1.65
154257--154331	27	2.8	27	95	4	134	53	20	12	14	1.72
155318--155425	33	3.3	33	98	0	207	15	20	48	15	1.82
157957--158014	30	1.9	31	85	3	82	18	29	18	32	1.96
157992--158077	36	2.5	35	81	5	86	15	27	17	39	1.89
161819--161953	42	3.3	42	83	10	208	28	28	31	11	1.92
161965--162080	17	6.0	17	70	24	79	8	31	16	43	1.78
161958--162080	41	3.0	41	98	0	237	8	32	17	41	1.80
161982--162064	24	3.8	24	74	21	99	9	31	18	40	1.82
166156--166213	30	1.9	31	85	3	82	18	29	18	32	1.96
166191--166276	36	2.5	35	81	5	86	15	27	17	39	1.89
167841--167915	17	4.0	17	72	21	60	44	16	32	8	1.76
167841--167922	41	2.0	41	97	0	155	41	17	32	8	1.79
167927--168061	42	3.3	42	83	10	208	11	31	28	28	1.92
172384--172489	56	1.9	56	94	0	185	21	28	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175729--175755	13	2.1	13	100	0	54	22	37	11	29	1.89
179859--179896	11	3.4	11	92	3	58	73	21	0	5	1.02
179925--179980	2	31.0	2	73	20	52	53	0	0	46	1.00
179925--179963	11	3.5	11	92	3	60	53	0	0	46	1.00
179924--179980	18	2.9	20	84	12	82	52	0	0	47	1.00
179924--179979	11	5.1	11	80	10	53	51	0	0	48	1.00
179925--179980	9	5.7	11	75	25	63	53	0	0	46	1.00
180052--180084	14	2.4	14	94	0	57	33	15	24	27	1.95
180298--180326	15	1.9	15	100	0	58	41	6	31	20	1.79
190216--190327	22	4.9	22	81	10	116	42	9	12	34	1.76
198937--199002	32	2.1	32	100	0	132	21	19	19	39	1.93
198937--199014	32	2.4	32	91	4	104	21	21	19	37	1.95
200205--200233	15	1.9	15	100	0	58	20	31	6	41	1.79
200951--201006	26	2.2	25	87	3	76	14	30	17	37	1.90
202323--202412	22	4.1	22	88	2	128	40	6	15	37	1.74
202937--202983	21	2.3	21	88	3	69	36	10	25	27	1.89
203868--203943	27	2.8	27	100	0	152	2	42	3	51	1.34
204251--204318	22	3.1	22	78	0	82	33	11	10	44	1.75
206774--206849	34	2.2	34	83	4	100	42	18	18	21	1.90
206857--206903	22	2.1	22	88	0	67	44	8	12	34	1.73
224052--224124	30	2.4	30	90	0	128	19	20	38	21	1.94
224542--224616	17	4.0	17	72	21	60	44	16	32	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224542--224623	41	2.0	41	97	0	155	41	17	32	8	1.79
251376--251409	17	2.0	17	100	0	68	11	23	5	58	1.55
261557--261591	14	2.5	14	95	0	61	54	8	2	34	1.46
263782--263841	31	1.9	31	96	0	111	28	25	30	16	1.97
265591--265723	71	1.9	70	93	6	232	24	20	21	34	1.96
275696--275781	42	2.0	42	97	0	163	10	33	27	27	1.90
283773--283806	17	2.0	17	88	0	50	29	20	17	32	1.96
303565--303598	17	2.0	17	100	0	68	11	23	5	58	1.55
313746--313780	14	2.5	14	95	0	61	54	8	2	34	1.46
315971--316030	31	1.9	31	96	0	111	28	25	30	16	1.97
317780--317912	71	1.9	70	93	6	232	24	20	21	34	1.96
327885--327970	42	2.0	42	97	0	163	10	33	27	27	1.90
333704--333761	30	1.9	31	85	3	82	32	18	29	18	1.96
333704--333822	31	3.8	30	77	13	91	31	18	31	18	1.95
342478--342610	42	3.2	42	95	0	239	27	26	33	12	1.92
342622--342656	17	2.1	17	100	0	70	5	28	20	45	1.73
361670--361791	37	3.0	42	82	11	182	28	29	31	10	1.90
361803--361837	17	2.1	17	94	0	61	8	28	17	45	1.77
366949--367025	38	2.0	38	82	9	95	31	14	29	24	1.94
377591--377622	15	2.1	15	100	0	64	37	15	21	25	1.93
378030--378087	22	2.6	22	88	0	80	37	10	10	41	1.73
378154--378220	34	2.0	34	88	5	100	22	17	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378471--378526	26	2.2	26	87	6	78	41	7	30	21	1.80
380676--380743	22	3.1	22	78	0	82	44	10	11	33	1.75
381051--381126	27	2.8	27	100	0	152	51	3	42	2	1.34
382582--382671	22	4.1	22	88	2	128	37	15	6	40	1.74
383704--383749	22	2.1	22	83	0	56	47	6	15	30	1.70
383988--384043	26	2.2	26	87	3	78	37	17	30	14	1.90
384761--384789	15	1.9	15	100	0	58	41	6	31	20	1.79
385992--386057	32	2.1	32	100	0	132	39	19	19	21	1.93
392473--392673	37	5.0	42	81	11	278	28	29	30	10	1.91
392473--392673	79	2.5	79	99	0	393	28	29	30	10	1.91
392685--392760	17	4.1	17	74	21	71	9	30	17	43	1.80
392678--392783	41	2.6	41	98	0	203	10	31	17	40	1.84
392702--392783	24	3.7	24	72	21	88	10	30	17	41	1.83
394400--394457	30	1.9	31	85	3	82	18	29	18	32	1.96
394435--394520	36	2.5	35	81	5	86	15	27	17	39	1.89
396253--396324	33	2.2	33	100	0	144	13	33	16	36	1.89
413213--413270	22	2.6	22	88	0	80	37	10	10	41	1.73
413337--413403	34	2.0	34	88	5	100	22	17	16	43	1.88
413654--413709	26	2.2	26	87	6	78	41	7	30	21	1.80
415859--415926	22	3.1	22	78	0	82	44	10	11	33	1.75
416234--416309	27	2.8	27	100	0	152	51	3	42	2	1.34
417765--417854	22	4.1	22	88	2	128	37	15	6	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418887--418932	22	2.1	22	83	0	56	47	6	15	30	1.70
419171--419226	26	2.2	26	87	3	78	37	17	30	14	1.90
419944--419972	15	1.9	15	100	0	58	41	6	31	20	1.79
421175--421240	32	2.1	32	100	0	132	39	19	19	21	1.93
427169--427216	23	2.1	23	92	0	78	22	37	16	22	1.94
428621--428732	29	3.9	29	100	0	224	31	17	43	7	1.76
429338--429416	23	3.6	23	72	16	85	29	34	15	21	1.94
433906--433952	22	2.1	22	88	0	67	34	12	8	44	1.73
433969--434035	34	2.0	34	88	5	100	22	17	16	43	1.88
434286--434341	26	2.2	26	87	6	78	41	7	30	21	1.80

Tables:   1   2