Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_027000
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 737091
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
File 2 of 4
Found at i:272608 original size:14 final size:15
Alignment explanation
Indices: 272589--272624 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
272579 GGCTGAGCTA
272589 CTTGTTTTCT-TGTT
1 CTTGTTTTCTGTGTT
*
272603 CTTGTTTTCTGTTTT
1 CTTGTTTTCTGTGTT
272618 CTTGTTT
1 CTTGTTT
272625 ATGCATTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.72
Consensus pattern (15 bp):
CTTGTTTTCTGTGTT
Left flanking sequence: Indices 272089 -- 272588
AGCATAGATTTGTATAGGTTTAGACGTATTGCATTGGGGATATGCTTTCAAAGCAAAGGAGATCC
TCTATTGAATCAGAAAATAGAAGGATCTATAAACCGATTATCAATGCTAAAAAGAAGAAGTGTGA
AATCGAAGGAAGAAGGCTTTTGTTGTATTTTAGACTTCATTGCCGATACCATCTTTATTTCCGCA
CTTTATATAAGTTAACTGCTGCTACTGGGAAGTTAGTAAGTCATTGGCTCACTAGAAAAATTTCA
TAAAAGATAAAGACGCGCGAAGCGTCCTGGCTCACAAGTTAGGATGGTGAGTTCTTAGACGTTAT
ACTTAGAAATTATTACATAGAAAGCATCTATCTTTCTTTTCTGAATAAGAAGAGTCCGTTTAAGT
CTTTCTTGTAATTCCTGAAAAATCATCTGGGCTTGCTTACGCTTAGCTAGTTTGAAACTACCCCA
TTTTGGCTTATCCGACCCTAAGATTGAGGGTCTAAGGCTGAGCTA
Right flanking sequence: Indices 272625 -- 273124
ATGCATTGATAGGTTAATTGAGTGGATGAATGCCCGGGAATAGTAGACTAGATAGTAGGTTATTC
CTTTGTTTCATGTAGCTTGTTTTGTGTTTGTTTGTTTGTTTCTCTACAGTTTTCCTAGGTTTCTC
TACTGTATTCCTAGGTTTGTTTCTCTATAGGTTAGTCTATCTATTTGTTAGTTTGAGTATTCCCT
AGTTTATTGATTGTATAGCTGACTGGGAACCTACCTTAGCGTCGGTAAGGGGAAGTCTCTAGCTC
TAGTTCCAGCATAGGATAAGTCTCTTTCTCTAGTTCCAGCATAGGGGTTTCGAATGAATCTAATC
GGATAGCATTATTTATGGATTCTGTTCCGAGTATAGCCGAAGGTGTAGCTAAGAGGAAGACAGTT
ACAGCGGGGGGTATAATCTCAATCTCTTCTCTTCTTCCGGATAGCCAATGTCAGCTAGTCAACCA
AGCATCTATCTAATATATCTAATTCCTGCAGCTGAACTCAATCAA
Found at i:272751 original size:21 final size:21
Alignment explanation
Indices: 272727--272772 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
272717 TTGTTTGTTT
*
272727 GTTTCTCTACAGTTTTCCTAG
1 GTTTCTCTACAGTATTCCTAG
*
272748 GTTTCTCTACTGTATTCCTAG
1 GTTTCTCTACAGTATTCCTAG
272769 GTTT
1 GTTT
272773 GTTTCTCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.15, T:0.50
Consensus pattern (21 bp):
GTTTCTCTACAGTATTCCTAG
Left flanking sequence: Indices 272227 -- 272726
GAAGAAGGCTTTTGTTGTATTTTAGACTTCATTGCCGATACCATCTTTATTTCCGCACTTTATAT
AAGTTAACTGCTGCTACTGGGAAGTTAGTAAGTCATTGGCTCACTAGAAAAATTTCATAAAAGAT
AAAGACGCGCGAAGCGTCCTGGCTCACAAGTTAGGATGGTGAGTTCTTAGACGTTATACTTAGAA
ATTATTACATAGAAAGCATCTATCTTTCTTTTCTGAATAAGAAGAGTCCGTTTAAGTCTTTCTTG
TAATTCCTGAAAAATCATCTGGGCTTGCTTACGCTTAGCTAGTTTGAAACTACCCCATTTTGGCT
TATCCGACCCTAAGATTGAGGGTCTAAGGCTGAGCTACTTGTTTTCTTGTTCTTGTTTTCTGTTT
TCTTGTTTATGCATTGATAGGTTAATTGAGTGGATGAATGCCCGGGAATAGTAGACTAGATAGTA
GGTTATTCCTTTGTTTCATGTAGCTTGTTTTGTGTTTGTTTGTTT
Right flanking sequence: Indices 272773 -- 273272
GTTTCTCTATAGGTTAGTCTATCTATTTGTTAGTTTGAGTATTCCCTAGTTTATTGATTGTATAG
CTGACTGGGAACCTACCTTAGCGTCGGTAAGGGGAAGTCTCTAGCTCTAGTTCCAGCATAGGATA
AGTCTCTTTCTCTAGTTCCAGCATAGGGGTTTCGAATGAATCTAATCGGATAGCATTATTTATGG
ATTCTGTTCCGAGTATAGCCGAAGGTGTAGCTAAGAGGAAGACAGTTACAGCGGGGGGTATAATC
TCAATCTCTTCTCTTCTTCCGGATAGCCAATGTCAGCTAGTCAACCAAGCATCTATCTAATATAT
CTAATTCCTGCAGCTGAACTCAATCAACTCAACAAGCAAGTCAACCAAGCTCCAATCTCAACAAG
CTCCAAGCGACTTTACCGCGACTTTGCACAAGCGCTAAGCTTTATTAAATAATTCATTCTTGGCC
CGGCAGCCTTCATGCTCTACCCACCTTCTTATATGAGCTTATCCA
Found at i:272751 original size:25 final size:24
Alignment explanation
Indices: 272723--272781 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 24
272713 GTGTTTGTTT
*
272723 GTTTGTTTCTCTACAGTTTTCCTA
1 GTTTGTTTCTCTACAGTATTCCTA
*
272747 G---GTTTCTCTACTGTATTCCTA
1 GTTTGTTTCTCTACAGTATTCCTA
272768 GGTTTGTTTCTCTA
1 -GTTTGTTTCTCTA
272782 TAGGTTAGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
21 18 0.62
22 1 0.03
24 1 0.03
25 9 0.31
ACGTcount: A:0.12, C:0.20, G:0.15, T:0.53
Consensus pattern (24 bp):
GTTTGTTTCTCTACAGTATTCCTA
Left flanking sequence: Indices 272223 -- 272722
GAAGGAAGAAGGCTTTTGTTGTATTTTAGACTTCATTGCCGATACCATCTTTATTTCCGCACTTT
ATATAAGTTAACTGCTGCTACTGGGAAGTTAGTAAGTCATTGGCTCACTAGAAAAATTTCATAAA
AGATAAAGACGCGCGAAGCGTCCTGGCTCACAAGTTAGGATGGTGAGTTCTTAGACGTTATACTT
AGAAATTATTACATAGAAAGCATCTATCTTTCTTTTCTGAATAAGAAGAGTCCGTTTAAGTCTTT
CTTGTAATTCCTGAAAAATCATCTGGGCTTGCTTACGCTTAGCTAGTTTGAAACTACCCCATTTT
GGCTTATCCGACCCTAAGATTGAGGGTCTAAGGCTGAGCTACTTGTTTTCTTGTTCTTGTTTTCT
GTTTTCTTGTTTATGCATTGATAGGTTAATTGAGTGGATGAATGCCCGGGAATAGTAGACTAGAT
AGTAGGTTATTCCTTTGTTTCATGTAGCTTGTTTTGTGTTTGTTT
Right flanking sequence: Indices 272782 -- 273281
TAGGTTAGTCTATCTATTTGTTAGTTTGAGTATTCCCTAGTTTATTGATTGTATAGCTGACTGGG
AACCTACCTTAGCGTCGGTAAGGGGAAGTCTCTAGCTCTAGTTCCAGCATAGGATAAGTCTCTTT
CTCTAGTTCCAGCATAGGGGTTTCGAATGAATCTAATCGGATAGCATTATTTATGGATTCTGTTC
CGAGTATAGCCGAAGGTGTAGCTAAGAGGAAGACAGTTACAGCGGGGGGTATAATCTCAATCTCT
TCTCTTCTTCCGGATAGCCAATGTCAGCTAGTCAACCAAGCATCTATCTAATATATCTAATTCCT
GCAGCTGAACTCAATCAACTCAACAAGCAAGTCAACCAAGCTCCAATCTCAACAAGCTCCAAGCG
ACTTTACCGCGACTTTGCACAAGCGCTAAGCTTTATTAAATAATTCATTCTTGGCCCGGCAGCCT
TCATGCTCTACCCACCTTCTTATATGAGCTTATCCACGTGGATTT
Found at i:272908 original size:30 final size:30
Alignment explanation
Indices: 272872--272929 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
272862 CGGTAAGGGG
272872 AAGTCTCTAGCTCTAGTTCCAGCATAGGAT
1 AAGTCTCTAGCTCTAGTTCCAGCATAGGAT
**
272902 AAGTCTCTTTCTCTAGTTCCAGCATAGG
1 AAGTCTCTAGCTCTAGTTCCAGCATAGG
272930 GGTTTCGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (30 bp):
AAGTCTCTAGCTCTAGTTCCAGCATAGGAT
Left flanking sequence: Indices 272372 -- 272871
GTCCTGGCTCACAAGTTAGGATGGTGAGTTCTTAGACGTTATACTTAGAAATTATTACATAGAAA
GCATCTATCTTTCTTTTCTGAATAAGAAGAGTCCGTTTAAGTCTTTCTTGTAATTCCTGAAAAAT
CATCTGGGCTTGCTTACGCTTAGCTAGTTTGAAACTACCCCATTTTGGCTTATCCGACCCTAAGA
TTGAGGGTCTAAGGCTGAGCTACTTGTTTTCTTGTTCTTGTTTTCTGTTTTCTTGTTTATGCATT
GATAGGTTAATTGAGTGGATGAATGCCCGGGAATAGTAGACTAGATAGTAGGTTATTCCTTTGTT
TCATGTAGCTTGTTTTGTGTTTGTTTGTTTGTTTCTCTACAGTTTTCCTAGGTTTCTCTACTGTA
TTCCTAGGTTTGTTTCTCTATAGGTTAGTCTATCTATTTGTTAGTTTGAGTATTCCCTAGTTTAT
TGATTGTATAGCTGACTGGGAACCTACCTTAGCGTCGGTAAGGGG
Right flanking sequence: Indices 272930 -- 273429
GGTTTCGAATGAATCTAATCGGATAGCATTATTTATGGATTCTGTTCCGAGTATAGCCGAAGGTG
TAGCTAAGAGGAAGACAGTTACAGCGGGGGGTATAATCTCAATCTCTTCTCTTCTTCCGGATAGC
CAATGTCAGCTAGTCAACCAAGCATCTATCTAATATATCTAATTCCTGCAGCTGAACTCAATCAA
CTCAACAAGCAAGTCAACCAAGCTCCAATCTCAACAAGCTCCAAGCGACTTTACCGCGACTTTGC
ACAAGCGCTAAGCTTTATTAAATAATTCATTCTTGGCCCGGCAGCCTTCATGCTCTACCCACCTT
CTTATATGAGCTTATCCACGTGGATTTAATAAACTTCCTATGTTGTACCCGACCATTCCTTACTA
TCGACAGGAAATCAACGAAGGCAGGACTTCGTACCAGGTATAAGGGGACATGCCTCCCTTTAGCA
AGTCCAACGATAAGAAACCTATTACTCTAACTGACTCTAAGTAGG
Found at i:280275 original size:18 final size:18
Alignment explanation
Indices: 280252--280287 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
280242 TCGTAGAGAG
280252 ACTTGGTTATTTCATTCC
1 ACTTGGTTATTTCATTCC
280270 ACTTGGTTATTTCATTCC
1 ACTTGGTTATTTCATTCC
280288 TAACTCTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.11, T:0.50
Consensus pattern (18 bp):
ACTTGGTTATTTCATTCC
Left flanking sequence: Indices 279752 -- 280251
CTTCTCTTCTTCTTGTTCATCGTAAGGTGAGGTAAAGAGTAGAGTCCTCCTCAGCTCCCTAATAA
TTATTAATATGATAGCGACCCCTACCGGAGGATCTTCAGGAGGGAGATGTAGAGCTGGTAGTTTA
CTTACTTATCCGTGTAACTAGTTGAAAGGCCAAGCGGTCTTTTTCTTTTTGAGCTTTATATATCT
ACATTCTCATGAACAGTAAGCTAGGTCTGGTCAACAGAAAGAGCTAGTAAGAAGGAAGGCACCCC
GAAAGTGTCTTTTTCGGGCAGCCTAGCCAATGTGATGATCTTCACAAGCAAAAGAAAAAAGCTTC
TAAGCAATGTCGAAGATGCTACAATGGGAAATTGGTTGGTAAATTCCCTTCTGGTGTGGAGAAGG
ATCTCCCCTGGTTGGGAGGCTCATACGATACCTCATCCGTGGTGCGGAGAACGATCCCCATTCCC
CAAACCTTGGAGAAATGGCTTAAACCTATTCCAATTCGTAGAGAG
Right flanking sequence: Indices 280288 -- 280787
TAACTCTCCATTTTGTCCTACTTCTCCTTCATTTGAAGATGAGTCGTGACTGGTACCAGCTGGGA
TGCTTTGGTAAGCAAGCAGTTACGTAGTCTTACTTAAAAAGGGTGGAATCGGCATACCAACCAGG
GAGCGAAGAACGAAGATCAAGGTTTTTGGCTTGCAATAAAGCTAGGGTCCTGATCGAACAACTAG
TAGTCCTATCTATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACATCTGC
TGGCATGTGATGTTTGGACATAAAATCGAGTCCTTGTGAATGGGCAGAGCCTGGTGCTCTTATTT
TACGACGGTAGGGACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTTAGGTGCT
TCAACTGCGGTATAGGTAGAAGAAGCTGGTACGGAAAAACCTTCTGTATAAAGTTCGAAATGGTG
AATCAAGGATTCCATGGATAGTTTCATTCGACATCGTGATGGAGG
Found at i:285076 original size:21 final size:21
Alignment explanation
Indices: 285050--285089 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
285040 AATAGGTGGG
285050 GCCTGAGGTTGAGGCCCCTGA
1 GCCTGAGGTTGAGGCCCCTGA
*
285071 GCCTGAGGTTGAGGTCCCT
1 GCCTGAGGTTGAGGCCCCT
285090 CAGCAGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.28, G:0.38, T:0.23
Consensus pattern (21 bp):
GCCTGAGGTTGAGGCCCCTGA
Left flanking sequence: Indices 284550 -- 285049
ATATGCAGCCTTGATCTTTCTTTGTCTCGAACCCCAGACCCCACCCTAACGTAGGTCTACTCTAC
GTATAGCCTTCAATATTTTTTGATAGGGGACACTGAATGAATTAATGAACTAAAAACGTTTCCAA
TACCGATAGCTGCTCCCGCTAAAGCAATAGTGGCCGCTCCGGCACCTAATCGGGGCGGCATCCGA
AAAAAGATGCTTCACGCCTCCGAATACTGAAAAGTTTATCTGCCAGCTCCTCAGGGGGCGTGCTG
TTCAATTCTGCTTGAAGTAAGCGGACATATTCCGGTTGCATACAATTTGTTTGCACAAAAAGCAG
CAGTCCATTCAATTTACTCAAGTTGTATAAAGTTTGGGGATCTGTTATTTCCCCATCAATATGGA
CAACTTTGCTATAATAAAAAGGCGAGTTGACAACTGCCCACTCGTCTTCCCGGGGAATCGGGACC
CCCTCCAGAACCCGGGGAATCGGGACCCCCTCCACAATAGGTGGG
Right flanking sequence: Indices 285090 -- 285589
CAGCAGCTCTTGGTGGGAATTCCTCCTCGGGCATCATAGCATTCCCCGCCGGACAATAGATAAAA
AATAGAATCATAAAAAAAAAAGGAAAAGAAAAACTAGGAAAAACCAAATGCAGAATTCTCCTGAA
AAAAACAGCTTGAATATTCTTTATAAAGACTTCAATGAAGAGGGATTGTTCAATCGATGACAAAA
GGATATATAAAATAAAAAGACTAGAACCGATGAGTGTTACAACCGCTATCAGATAACCCACGAGC
AAATTTCTCATAAAAAAAGCGATCTTTTCTTTATCAGTGAACCAAGCGGAATCGGAACTACGATT
AAGATTAAGTCTTGTCGAAATAGGATTTCCTTTGCGTGCCATATGCGCTTAAAATGTTGATTCTT
TTTTACCTTTCGTGTTTTGTTTTGTTCCCTTTCCTTAGAGTCTCCCTCTCCTCTTATCTATGTTT
GAGATATTCATAACCTCTTCGTTACACTCGAGCAAGTCCCTACCT
Found at i:291894 original size:57 final size:59
Alignment explanation
Indices: 291832--292049 Score: 254
Period size: 57 Copynumber: 3.8 Consensus size: 59
291822 CTAAGTTTGT
* * *
291832 GAGAGGTTATTTAT-TACTCGACTGTTAAGGAGAGG-CACGAAGGACTCGACTGAAAAG
1 GAGAGGTAATTTATATACTCGACTATAAAGGAGAGGTCACGAAGGACTCGACTGAAAAG
* *
291889 GAGAGGTAATTTATATACTCGA-T-CAAAGTGAGAGGTCA-GAAGGACTCGACTGATAAG
1 GAGAGGTAATTTATATACTCGACTATAAAG-GAGAGGTCACGAAGGACTCGACTGAAAAG
* * ** *
291946 GAGAGGTTATTTATATACTCGACTATAAAGGAGAGGTAATTTATA-TACTCGACT-ATAAAG
1 GAGAGGTAATTTATATACTCGACTATAAAGGAGAGGTCA-CGA-AGGACTCGACTGA-AAAG
292006 GAGAGGTAATTTATATACTCGACTATAAAGGAGAGG-CACGAAGG
1 GAGAGGTAATTTATATACTCGACTATAAAGGAGAGGTCACGAAGG
292050 TGCTCTATAC
Statistics
Matches: 136, Mismatches: 15, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
56 3 0.02
57 60 0.44
58 19 0.14
59 6 0.04
60 47 0.35
61 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.25
Consensus pattern (59 bp):
GAGAGGTAATTTATATACTCGACTATAAAGGAGAGGTCACGAAGGACTCGACTGAAAAG
Left flanking sequence: Indices 291332 -- 291831
CCATTAAGCAATTTCTATAAATTCATTCATTCAATTCAAGGCTTGCTTTTAGAGCAATGAAGCTG
AAAGGTGAATTGAGAAGATCCAGAGCGAACTAATGAGTTTGAGTTCATGAGGTTTCATGCGTAAG
AGTCAGACTACTACTATATGATAGAAGAAGTGAAGTAAGAATCTAGAGAATCTTTCGGCGGATCT
ATTCGTATTAAAGAAAGTCCGGTTGAGAAACATAAACTTCCGCCCCAGGATGGATGTAATTCAGC
GCAAATCCGCTCTTCTCTTTGAAAGAAGGAGTTCTTCCGGACGCCGCTAACAAGCCTTATGCCTT
TTCTTATGCTTTATCCGCTAAAGACCAACCTAAACGTGAGAACCGGCTCGAAGAGGAAGAAGGAA
GGTGCTCGACCAAAGGGAGAGGAAAGAGGGACGAGTCCTGAGAGACGAGACTGAAAGGAGAGGCA
GAAAGACTCGTTGTTTGTGAGAGGTATAACGAACTCTAAGTTTGT
Right flanking sequence: Indices 292050 -- 292549
TGCTCTATACTTGCCAGGAAGAGGAAAGAGGGACGAGGGATTTATGACGAGACTTTCCAGGAGAG
GAGATGCTCGACTGAAAGGAAGAGGTAATTAATTGTTGACTGAAAGCACTCGGAAGAGGTGATTG
ATTTCTCGAATGAAAGGAAGAGGTAACAAGTGTTGAACTGCGGGAAGAGCCATTTATTTGCTGGC
ACTTTCCTGGCACTTTTAGCAGCTATTTCTTTCCTTTGCTTTGTTATAGCTCTTGAGGAAGAAGG
GAAGAGTGAATTTATTGCTCTACTTTCCAGAAAGAGGCACGAAGGACTCGACTGAAAGGAAGAGG
TAGTCTATTGCTCATTTCTTGGAATTGGAAGAGGTAGTTTATTACTCGTTTCTTGGTAATTAATT
GTTGACTGAAAGAAGAGGAAGAGGGTGGACCGCACCTACGACCTAGAGCCTGGTAGTAAAACAAG
GAGAAAAGGTTACACAGATAACCACATACGCACACAGTAGCTCCT
Found at i:291968 original size:30 final size:29
Alignment explanation
Indices: 291875--292041 Score: 182
Period size: 30 Copynumber: 5.7 Consensus size: 29
291865 GGCACGAAGG
*
291875 ACTCGACTGAAAAGGAGAGGTAATTTATAT
1 ACTCGACT-ATAAGGAGAGGTAATTTATAT
* * *
291905 ACTCGA-TCA-AAGTGAGAGGTCA--GA-AGG
1 ACTCGACT-ATAAG-GAGAGGTAATTTATA-T
*
291932 ACTCGACTGATAAGGAGAGGTTATTTATAT
1 ACTCGACT-ATAAGGAGAGGTAATTTATAT
291962 ACTCGACTATAAAGGAGAGGTAATTTATAT
1 ACTCGACTAT-AAGGAGAGGTAATTTATAT
291992 ACTCGACTATAAAGGAGAGGTAATTTATAT
1 ACTCGACTAT-AAGGAGAGGTAATTTATAT
292022 ACTCGACTATAAAGGAGAGG
1 ACTCGACTAT-AAGGAGAGG
292042 CACGAAGGTG
Statistics
Matches: 120, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 1 0.01
27 7 0.06
28 13 0.11
29 15 0.12
30 83 0.69
31 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (29 bp):
ACTCGACTATAAGGAGAGGTAATTTATAT
Left flanking sequence: Indices 291375 -- 291874
TGCTTTTAGAGCAATGAAGCTGAAAGGTGAATTGAGAAGATCCAGAGCGAACTAATGAGTTTGAG
TTCATGAGGTTTCATGCGTAAGAGTCAGACTACTACTATATGATAGAAGAAGTGAAGTAAGAATC
TAGAGAATCTTTCGGCGGATCTATTCGTATTAAAGAAAGTCCGGTTGAGAAACATAAACTTCCGC
CCCAGGATGGATGTAATTCAGCGCAAATCCGCTCTTCTCTTTGAAAGAAGGAGTTCTTCCGGACG
CCGCTAACAAGCCTTATGCCTTTTCTTATGCTTTATCCGCTAAAGACCAACCTAAACGTGAGAAC
CGGCTCGAAGAGGAAGAAGGAAGGTGCTCGACCAAAGGGAGAGGAAAGAGGGACGAGTCCTGAGA
GACGAGACTGAAAGGAGAGGCAGAAAGACTCGTTGTTTGTGAGAGGTATAACGAACTCTAAGTTT
GTGAGAGGTTATTTATTACTCGACTGTTAAGGAGAGGCACGAAGG
Right flanking sequence: Indices 292042 -- 292541
CACGAAGGTGCTCTATACTTGCCAGGAAGAGGAAAGAGGGACGAGGGATTTATGACGAGACTTTC
CAGGAGAGGAGATGCTCGACTGAAAGGAAGAGGTAATTAATTGTTGACTGAAAGCACTCGGAAGA
GGTGATTGATTTCTCGAATGAAAGGAAGAGGTAACAAGTGTTGAACTGCGGGAAGAGCCATTTAT
TTGCTGGCACTTTCCTGGCACTTTTAGCAGCTATTTCTTTCCTTTGCTTTGTTATAGCTCTTGAG
GAAGAAGGGAAGAGTGAATTTATTGCTCTACTTTCCAGAAAGAGGCACGAAGGACTCGACTGAAA
GGAAGAGGTAGTCTATTGCTCATTTCTTGGAATTGGAAGAGGTAGTTTATTACTCGTTTCTTGGT
AATTAATTGTTGACTGAAAGAAGAGGAAGAGGGTGGACCGCACCTACGACCTAGAGCCTGGTAGT
AAAACAAGGAGAAAAGGTTACACAGATAACCACATACGCACACAG
Found at i:292410 original size:34 final size:35
Alignment explanation
Indices: 292367--292435 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 35
292357 TCGACTGAAA
*
292367 GGAAGAGGTAGTCTATTGCTCATTTCTTGG-AATT
1 GGAAGAGGTAGTCTATTACTCATTTCTTGGTAATT
* *
292401 GGAAGAGGTAGTTTATTACTCGTTTCTTGGTAATT
1 GGAAGAGGTAGTCTATTACTCATTTCTTGGTAATT
292436 AATTGTTGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
34 27 0.87
35 4 0.13
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.41
Consensus pattern (35 bp):
GGAAGAGGTAGTCTATTACTCATTTCTTGGTAATT
Left flanking sequence: Indices 291867 -- 292366
CACGAAGGACTCGACTGAAAAGGAGAGGTAATTTATATACTCGATCAAAGTGAGAGGTCAGAAGG
ACTCGACTGATAAGGAGAGGTTATTTATATACTCGACTATAAAGGAGAGGTAATTTATATACTCG
ACTATAAAGGAGAGGTAATTTATATACTCGACTATAAAGGAGAGGCACGAAGGTGCTCTATACTT
GCCAGGAAGAGGAAAGAGGGACGAGGGATTTATGACGAGACTTTCCAGGAGAGGAGATGCTCGAC
TGAAAGGAAGAGGTAATTAATTGTTGACTGAAAGCACTCGGAAGAGGTGATTGATTTCTCGAATG
AAAGGAAGAGGTAACAAGTGTTGAACTGCGGGAAGAGCCATTTATTTGCTGGCACTTTCCTGGCA
CTTTTAGCAGCTATTTCTTTCCTTTGCTTTGTTATAGCTCTTGAGGAAGAAGGGAAGAGTGAATT
TATTGCTCTACTTTCCAGAAAGAGGCACGAAGGACTCGACTGAAA
Right flanking sequence: Indices 292436 -- 292935
AATTGTTGACTGAAAGAAGAGGAAGAGGGTGGACCGCACCTACGACCTAGAGCCTGGTAGTAAAA
CAAGGAGAAAAGGTTACACAGATAACCACATACGCACACAGTAGCTCCTTTCCTGACTGACAAAG
GGATTGAATAAGGGAATTCGAGAGAAAAGTGCAGTACGCACCTAACTCGAACCAGGTAAAACACG
TAAAAGGTTACCTAGCTAATTCCAGAGAAAAGCTACAAAACCAGACAGAGTATGTGAAAGGATGC
CTACTTTGCAAACCTATTTAGGGAGTAAGAAGCCCCCGTTGCCCAGCCCAATAACGAAATGGAAA
ATGTAGAAACACGAGAAATCGAGCTGAAAAAACAAGGTTGAAATCTCGATTAGCTGTTTACCAAC
ATGAGATGCTTGTTGTCGCGAGCCCTCATGAACGTAGGAGGTTCCATAGGGCCCATCCGAACATA
GTGAAGAGGGTGTTGCGTGCTAGTTTCCTCATAGACCATCCCCTG
Found at i:294748 original size:19 final size:19
Alignment explanation
Indices: 294724--294761 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
294714 TTCTTTCCAA
294724 GGGAAAGCACGATAAAATT
1 GGGAAAGCACGATAAAATT
294743 GGGAAAGCACGATAAAATT
1 GGGAAAGCACGATAAAATT
294762 CCTATTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.26, T:0.16
Consensus pattern (19 bp):
GGGAAAGCACGATAAAATT
Left flanking sequence: Indices 294224 -- 294723
AAAGTAGCTCCATAGGAGTAGGGGAAGGAAGGAAGGAACGAAGTGACTGACTTGCGGCAGGTTTA
AGCATTAGCGACGAAGCAAGGAGCAACGCGTACTGTTCGTGACTACCTTCTCTGTCATGTCTGAG
TTCTACCATTCTAGGGGTCTGTGCTTTGTCAATGTCACTTGCTTGCAATATGCTGAACACATACA
AGTTTGATTGAACAGTTCACATTGGCCATATATAGATAGAGATTATATAAAGTGTGCCGTTAGGG
AGGATAACTATCGAATAGGAAAGAGGGGAAAACGGACGATGAGATCAATCGCAGGCCAATGAACA
TATCTCAATCAATCAATAAATCTGAAAGCAAGGTGCTGTGCTATCTGAGCTTCAAACCAGACCTG
GATGATCCTGCAAGAAACCCGGTTCGATTTCCTCTTCTTTCGGAGCTGTGAAGGTAAAAGGCGAG
ATCCCTTATCCTTCCACTTTGGCACCCGAAATGAGTTCTTTCCAA
Right flanking sequence: Indices 294762 -- 295261
CCTATTTTTGTTCCATTTTCTAATGTACCAGTTTCCTATTGGTCGGCATTCGGATCTTGCTATGT
GGCAAGTGCTCTTGGGAAGCTATTACACGCAGATAAACTTACAGAGAGTCGCCAAAGAATCAGCT
TTGCTTGAATTTGCGTGGCCTCTTGTGGAAAGATTTTATCTTGATATAGAAAAGAACGTTTTCGT
TGAAATGAATGCTGTCTTATCAGTGGAAGCCTAAATGGTTTGTCTGTAAGCTTTGGGCACTCCAT
TAACCAATGCCCTATAGCTACTGCTGAGAAGGCTGCGAATGATAAGTGTGATGATAATAAACCCA
CTCTTGCTATGGATCGAGCTCTAATGAAGGAGGTATAATTTACAAAGGATCCATCGAGTTCTCAC
ACAGTCAGAGCTAGTCATAATAGTTATTACAGAATAGCCTATCTGATAACTCTATTGGGAGGCTC
GTACTACGTTCCAATCCTTTTCAAACTCTTAGTATGGAATCAGAT
Found at i:299877 original size:32 final size:30
Alignment explanation
Indices: 299841--299909 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 30
299831 GTTCGACCGT
*
299841 AGGGATTTATTTATGCTCGACTATAAAGGAAG
1 AGGGATTTATTTATGCTCGACT-GAAAGG-AG
299873 AGGG----ATTTATGCTCGACTGAAAGGAG
1 AGGGATTTATTTATGCTCGACTGAAAGGAG
299899 AGGGATTTATT
1 AGGGATTTATT
299910 ACTCGACCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
26 6 0.19
27 5 0.16
28 14 0.44
30 3 0.09
32 4 0.12
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (30 bp):
AGGGATTTATTTATGCTCGACTGAAAGGAG
Left flanking sequence: Indices 299341 -- 299840
AATTCCTGTCCTGGATGGATAGATTAGATTGTCCGTTTAAGTTTCCTGTACATAAGTGTCAATGT
AAGCAAACCGCCTTCCTTCGTATGGAATTGATAAAAATATGAATGCCGAGAATGCCAAAGGTAAC
CTACAGGTGTAGTTATAACCTAAAATATAGGAATTCGCAAAAAAAAAGACTTGGTAAGGTAAAAT
GATTGCTCAGACACTCAGTTCCTAAAATACCATTTTTTCAATTAAAGTAAATGGGTACTCGGCAC
CTAGCTTACTATAGTATATAGGGCCTTCACCTCAAATTCGTATAGCTAAGGTAAGGACTTCGTAC
CTTTAGAAGACTCCTTTTTGTTGGTGAAGTAAGAGGTTATTTATCTATTTATTGCTCTACTTTCC
AGTATTCAATAGAATCTAGGGAAGAGAAAAGCTATTTCTTTGCTTTCCTTTGGTTTGTTATAGCT
CTTTTGAGGAAGGGAAGACGTAATTAATATTAATTGTTCGACCGT
Right flanking sequence: Indices 299910 -- 300409
ACTCGACCTCAGGGAGAGGTATTTATTACTCGACCTCAGGGAGAGGCCGAAAGTGCTCTTAGAAG
GGAGAGGGTTTTTTTTATTGCTCGACTGAAAGGAGAGGGAAAGCCCTGTGAACCCACAGGTTTCG
ATTTAAGAGTATGTTCAAAGCATTGTGTTACCTTTTTGATCCCGCGTAGAGAAATGGATAAAAAG
TAACTCAAATAACGGGTTTTAGCAACTTTTTTCTTACGTTTTCCAAATGACATAATATACGCTAA
TAAGAAAAAAACTCCTCGTAAAGTGGGGTGATTTATCACTTTTACTAAGGAAACGCTTACTTTTG
ACCTATGCTAGATGCAAGTTTTTGTCTCCAATTTCATATGCGGATAGCTAAGAAATGAAATAGGA
CAAACAAAAGTCCAAGGAGGTTTATCTACTCGACTTCACAGGAAGAGGAGGTTTATCTACTCGAC
TTCACAGGAAGAGGAGGTTTATCTACTCGACTTCACAGGAAGAGG
Found at i:299907 original size:26 final size:28
Alignment explanation
Indices: 299849--299908 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
299839 GTAGGGATTT
*
299849 ATTTATGCTCGACTATAAAGGAAGAGGG
1 ATTTATGCTCGACTAGAAAGGAAGAGGG
299877 ATTTATGCTCGACT-GAAAGG-AGAGGG
1 ATTTATGCTCGACTAGAAAGGAAGAGGG
299903 ATTTAT
1 ATTTAT
299909 TACTCGACCT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 12 0.39
27 5 0.16
28 14 0.45
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (28 bp):
ATTTATGCTCGACTAGAAAGGAAGAGGG
Left flanking sequence: Indices 299349 -- 299848
TCCTGGATGGATAGATTAGATTGTCCGTTTAAGTTTCCTGTACATAAGTGTCAATGTAAGCAAAC
CGCCTTCCTTCGTATGGAATTGATAAAAATATGAATGCCGAGAATGCCAAAGGTAACCTACAGGT
GTAGTTATAACCTAAAATATAGGAATTCGCAAAAAAAAAGACTTGGTAAGGTAAAATGATTGCTC
AGACACTCAGTTCCTAAAATACCATTTTTTCAATTAAAGTAAATGGGTACTCGGCACCTAGCTTA
CTATAGTATATAGGGCCTTCACCTCAAATTCGTATAGCTAAGGTAAGGACTTCGTACCTTTAGAA
GACTCCTTTTTGTTGGTGAAGTAAGAGGTTATTTATCTATTTATTGCTCTACTTTCCAGTATTCA
ATAGAATCTAGGGAAGAGAAAAGCTATTTCTTTGCTTTCCTTTGGTTTGTTATAGCTCTTTTGAG
GAAGGGAAGACGTAATTAATATTAATTGTTCGACCGTAGGGATTT
Right flanking sequence: Indices 299909 -- 300408
TACTCGACCTCAGGGAGAGGTATTTATTACTCGACCTCAGGGAGAGGCCGAAAGTGCTCTTAGAA
GGGAGAGGGTTTTTTTTATTGCTCGACTGAAAGGAGAGGGAAAGCCCTGTGAACCCACAGGTTTC
GATTTAAGAGTATGTTCAAAGCATTGTGTTACCTTTTTGATCCCGCGTAGAGAAATGGATAAAAA
GTAACTCAAATAACGGGTTTTAGCAACTTTTTTCTTACGTTTTCCAAATGACATAATATACGCTA
ATAAGAAAAAAACTCCTCGTAAAGTGGGGTGATTTATCACTTTTACTAAGGAAACGCTTACTTTT
GACCTATGCTAGATGCAAGTTTTTGTCTCCAATTTCATATGCGGATAGCTAAGAAATGAAATAGG
ACAAACAAAAGTCCAAGGAGGTTTATCTACTCGACTTCACAGGAAGAGGAGGTTTATCTACTCGA
CTTCACAGGAAGAGGAGGTTTATCTACTCGACTTCACAGGAAGAG
Found at i:299914 original size:27 final size:26
Alignment explanation
Indices: 299841--299943 Score: 91
Period size: 27 Copynumber: 3.7 Consensus size: 26
299831 GTTCGACCGT
299841 AGGGATTTATTTATGCTCGACTATAAAGGAAG
1 AGGGATTTA-TTA--CTCGAC--TAAAGG-AG
*
299873 AGGGATTTA-TGCTCGACTGAAAGGAG
1 AGGGATTTATTACTCGACT-AAAGGAG
* *
299899 AGGGATTTATTACTCGACCTCAGGGAG
1 AGGGATTTATTACTCGA-CTAAAGGAG
*
299926 AGGTATTTATTACTCGAC
1 AGGGATTTATTACTCGAC
299944 CTCAGGGAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
26 13 0.21
27 32 0.51
28 8 0.13
30 1 0.02
32 9 0.14
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
AGGGATTTATTACTCGACTAAAGGAG
Left flanking sequence: Indices 299341 -- 299840
AATTCCTGTCCTGGATGGATAGATTAGATTGTCCGTTTAAGTTTCCTGTACATAAGTGTCAATGT
AAGCAAACCGCCTTCCTTCGTATGGAATTGATAAAAATATGAATGCCGAGAATGCCAAAGGTAAC
CTACAGGTGTAGTTATAACCTAAAATATAGGAATTCGCAAAAAAAAAGACTTGGTAAGGTAAAAT
GATTGCTCAGACACTCAGTTCCTAAAATACCATTTTTTCAATTAAAGTAAATGGGTACTCGGCAC
CTAGCTTACTATAGTATATAGGGCCTTCACCTCAAATTCGTATAGCTAAGGTAAGGACTTCGTAC
CTTTAGAAGACTCCTTTTTGTTGGTGAAGTAAGAGGTTATTTATCTATTTATTGCTCTACTTTCC
AGTATTCAATAGAATCTAGGGAAGAGAAAAGCTATTTCTTTGCTTTCCTTTGGTTTGTTATAGCT
CTTTTGAGGAAGGGAAGACGTAATTAATATTAATTGTTCGACCGT
Right flanking sequence: Indices 299944 -- 300443
CTCAGGGAGAGGCCGAAAGTGCTCTTAGAAGGGAGAGGGTTTTTTTTATTGCTCGACTGAAAGGA
GAGGGAAAGCCCTGTGAACCCACAGGTTTCGATTTAAGAGTATGTTCAAAGCATTGTGTTACCTT
TTTGATCCCGCGTAGAGAAATGGATAAAAAGTAACTCAAATAACGGGTTTTAGCAACTTTTTTCT
TACGTTTTCCAAATGACATAATATACGCTAATAAGAAAAAAACTCCTCGTAAAGTGGGGTGATTT
ATCACTTTTACTAAGGAAACGCTTACTTTTGACCTATGCTAGATGCAAGTTTTTGTCTCCAATTT
CATATGCGGATAGCTAAGAAATGAAATAGGACAAACAAAAGTCCAAGGAGGTTTATCTACTCGAC
TTCACAGGAAGAGGAGGTTTATCTACTCGACTTCACAGGAAGAGGAGGTTTATCTACTCGACTTC
ACAGGAAGAGGTTATTTATATACCCGTTGTCGCGAAGCGCGAGAC
Found at i:299944 original size:27 final size:27
Alignment explanation
Indices: 299895--299955 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
299885 TCGACTGAAA
299895 GGAGAGGGATTTATTACTCGACCTCAG
1 GGAGAGGGATTTATTACTCGACCTCAG
*
299922 GGAGAGGTATTTATTACTCGACCTCAG
1 GGAGAGGGATTTATTACTCGACCTCAG
299949 GGAGAGG
1 GGAGAGG
299956 CCGAAAGTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (27 bp):
GGAGAGGGATTTATTACTCGACCTCAG
Left flanking sequence: Indices 299395 -- 299894
AGTGTCAATGTAAGCAAACCGCCTTCCTTCGTATGGAATTGATAAAAATATGAATGCCGAGAATG
CCAAAGGTAACCTACAGGTGTAGTTATAACCTAAAATATAGGAATTCGCAAAAAAAAAGACTTGG
TAAGGTAAAATGATTGCTCAGACACTCAGTTCCTAAAATACCATTTTTTCAATTAAAGTAAATGG
GTACTCGGCACCTAGCTTACTATAGTATATAGGGCCTTCACCTCAAATTCGTATAGCTAAGGTAA
GGACTTCGTACCTTTAGAAGACTCCTTTTTGTTGGTGAAGTAAGAGGTTATTTATCTATTTATTG
CTCTACTTTCCAGTATTCAATAGAATCTAGGGAAGAGAAAAGCTATTTCTTTGCTTTCCTTTGGT
TTGTTATAGCTCTTTTGAGGAAGGGAAGACGTAATTAATATTAATTGTTCGACCGTAGGGATTTA
TTTATGCTCGACTATAAAGGAAGAGGGATTTATGCTCGACTGAAA
Right flanking sequence: Indices 299956 -- 300455
CCGAAAGTGCTCTTAGAAGGGAGAGGGTTTTTTTTATTGCTCGACTGAAAGGAGAGGGAAAGCCC
TGTGAACCCACAGGTTTCGATTTAAGAGTATGTTCAAAGCATTGTGTTACCTTTTTGATCCCGCG
TAGAGAAATGGATAAAAAGTAACTCAAATAACGGGTTTTAGCAACTTTTTTCTTACGTTTTCCAA
ATGACATAATATACGCTAATAAGAAAAAAACTCCTCGTAAAGTGGGGTGATTTATCACTTTTACT
AAGGAAACGCTTACTTTTGACCTATGCTAGATGCAAGTTTTTGTCTCCAATTTCATATGCGGATA
GCTAAGAAATGAAATAGGACAAACAAAAGTCCAAGGAGGTTTATCTACTCGACTTCACAGGAAGA
GGAGGTTTATCTACTCGACTTCACAGGAAGAGGAGGTTTATCTACTCGACTTCACAGGAAGAGGT
TATTTATATACCCGTTGTCGCGAAGCGCGAGACTTACAGGAAGAG
Found at i:300417 original size:31 final size:31
Alignment explanation
Indices: 300314--300409 Score: 192
Period size: 31 Copynumber: 3.1 Consensus size: 31
300304 CAAAAGTCCA
300314 AGGAGGTTTATCTACTCGACTTCACAGGAAG
1 AGGAGGTTTATCTACTCGACTTCACAGGAAG
300345 AGGAGGTTTATCTACTCGACTTCACAGGAAG
1 AGGAGGTTTATCTACTCGACTTCACAGGAAG
300376 AGGAGGTTTATCTACTCGACTTCACAGGAAG
1 AGGAGGTTTATCTACTCGACTTCACAGGAAG
300407 AGG
1 AGG
300410 TTATTTATAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (31 bp):
AGGAGGTTTATCTACTCGACTTCACAGGAAG
Left flanking sequence: Indices 299814 -- 300313
CGTAATTAATATTAATTGTTCGACCGTAGGGATTTATTTATGCTCGACTATAAAGGAAGAGGGAT
TTATGCTCGACTGAAAGGAGAGGGATTTATTACTCGACCTCAGGGAGAGGTATTTATTACTCGAC
CTCAGGGAGAGGCCGAAAGTGCTCTTAGAAGGGAGAGGGTTTTTTTTATTGCTCGACTGAAAGGA
GAGGGAAAGCCCTGTGAACCCACAGGTTTCGATTTAAGAGTATGTTCAAAGCATTGTGTTACCTT
TTTGATCCCGCGTAGAGAAATGGATAAAAAGTAACTCAAATAACGGGTTTTAGCAACTTTTTTCT
TACGTTTTCCAAATGACATAATATACGCTAATAAGAAAAAAACTCCTCGTAAAGTGGGGTGATTT
ATCACTTTTACTAAGGAAACGCTTACTTTTGACCTATGCTAGATGCAAGTTTTTGTCTCCAATTT
CATATGCGGATAGCTAAGAAATGAAATAGGACAAACAAAAGTCCA
Right flanking sequence: Indices 300410 -- 300909
TTATTTATATACCCGTTGTCGCGAAGCGCGAGACTTACAGGAAGAGGTAATTGATTTCTGGTAAG
GTAATAGATTTCTATTTCTGGTAAGGTCATTTCTTTCTCGTAAGAATCTAGTAGGATAGGGAAAA
GCCTTTTGTTTTGCTTGCTTTCCTCCAGTAGAGTGTTGACTATAGGATAGAGAAGAGATCCAATT
TCCCTGCCGGTTTGACTACCTAGTTATTATATATACCCTAGCTAGGTAAGCATGATCGGTGAATC
GTTTTTCCTAATTGTTTATCTTAATAGTATCTCCTAATTCGAATTCCGAGAGGAAGAGGAAGAGG
AGTCTTTTATTTAGCTTTTCCCAATTCGAATTCCAAGAGGAAGAGGTACAAAGTCGAGCCTTAGG
TCCAAGGGACAAAGTCACTCGACCTGCCGGGAAGAGGGATTTATTGTTTACCTTTGGGAAGAGGT
AATTTATTACTCGACTGAAAGGAAGAGGTCCAAGGTACTCGAATG
Found at i:327364 original size:18 final size:18
Alignment explanation
Indices: 327341--327376 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
327331 AGAAAAGAGT
327341 CAAACTTCGTACCTCTCC
1 CAAACTTCGTACCTCTCC
327359 CAAACTTCGTACCTCTCC
1 CAAACTTCGTACCTCTCC
327377 TGGCATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.44, G:0.06, T:0.28
Consensus pattern (18 bp):
CAAACTTCGTACCTCTCC
Left flanking sequence: Indices 326841 -- 327340
AAGGACTTACTTCTAAGGTGCCGTGCCAGTTAGTGCTTCTCTTCTTACTGACCCAATCTATGCGT
GACTATTATGTACTTAGTCTGCTAACGTTTAATAATACACTACATCTACCCTAACCGTTACTCGC
CTAACCGCCCTTCTACTGAGCTGCTATCTGAGCACTACCTCCACTACTACTGACTGACTGACTTG
CCTGCTCTCATAGAGTTATTGACTTGAACACCTGGGCTTCTCCTCCTCTTATTTACCGGCACCCA
TTGATGAACTAGGAAAGCGTGACTAAAGCTTGAAGGTTCTCTTAGCATGAAAGGGTAGACTGAAC
ACCCAGTGATCTTATATTAGAATGTTCTATAATCAAATTGGATCCCCTAAGTAAGAGATTCTATT
AAGTGAAAAGGTTACTCCCATAAATCCTGGAATTCACTCCCTTAATTCTGGAAATCAAGAAATAA
CCTACCATGAATGACTTTCCGCTTCTTCTTTCTGCAGAAAAGAGT
Right flanking sequence: Indices 327377 -- 327876
TGGCATTTTGAGTCGAGCACCTTCCTTCGTACCTCTCCTGACCAAGAAAAAGAAGTTCCAGAGGC
ATCTTCCGTTCATATCTCTTTTTTGCCTACTCCTTTCTTTTTTTGTTCCTTCTATGATCATAGTG
GTCCATCATTAGGTGGTACAGCAAAAGCAAGCCAAAGTCGACTAAGCACCCGAGTAAGTTAACTG
GCGAGAGGCGAGACGAGAATCCAATTATTGTTCTTGAAGTAGCCGTTTGTTGGACTTGGAAGACA
CGAATATACCCCATTACCACTACCTTAACCTTACATAAGCTCTGCTTGTACCCGAAGACTCTGCT
GCATAATATCTGCATGGAAGAAAGATCATCGACCGTCGCCATAGTGGAAAAGGCTTCTTCAACGA
AAAGATCAGAGGCAGATTCAATCCCAACAGTTCCCATCTTTTGTGCGTTAAGCGGAAGAGTAAGC
AGCATAGCATATTCATGGATGGGATGTCTTGGAAACGGTTGAAGA
Found at i:331275 original size:12 final size:13
Alignment explanation
Indices: 331258--331287 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
331248 CCCGTAATGC
331258 TCTAAGG-TATGG
1 TCTAAGGCTATGG
331270 TCTAAGGCTATGG
1 TCTAAGGCTATGG
331283 TCTAA
1 TCTAA
331288 TCCACTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (13 bp):
TCTAAGGCTATGG
Left flanking sequence: Indices 330758 -- 331257
TCTCAGATAGAAGAAAGCAAGTAGGTGTAGCGAGGCTCCTGTATTGAGGATAGAATTGCTAGCGC
ATATAGCAAAAAGAAAACTTAGGAGGGTGTAGCATAGGGAGGCATCGAATAGAAGAAGAAATGAG
ATTCTTGTAATTTATTACTACCTAGTTAAACCCAACCTAGGTCAAGCTTAGGATACCTTTGGAAA
TAGTTACTAGAGTTCTTAGAGAGGGTTTTCAATCCAAAGCTTCAGCTTCTCTTCTAATCCCTCTA
ATCCCTCAATGTGACTAATGCGGTAATGCTTGCTTCTAATCCTCTAATTCCTCTATCTAATTCTT
TTCTTATTGCCGTAATCCTCTAATGCTGTAATGTCAGCTAGACCAACCCAGTATTCCTAGGGAGA
GCGCCATACCCGGTCTTCCGTTCTAATCCCTTTATCTATCTAATTGCCGTAATGCGTAATGCGTA
ATGCCGTAATCCCTTAATCTCGTAATCTCTACATTCCCGTAATGC
Right flanking sequence: Indices 331288 -- 331787
TCCACTGTTTTGTTTAATCCACTGTTTTTATCTAGAGGTTTGATCTCCATGTTTAATCCAATCCA
CTGCACTGGTCCAATCCACTGGTTTGTTTGATCTACCGGTTTGTTTGATCTACCGGTTTGATCCT
AATCCTCTGCTCTGTTTTTATCTACAGGTTTGTCTGATCTATAGGTTTGTCCAATCCCTTGCCTT
GGTCTAATGCACTGCACTGGTCTATGGTCTTCTGGTCTAATCCAATCCCTTGCCTTGGTCTATTC
CATTCCAATCCCTTGGTCTATGGGTCTAAGCACTAGTTGAATCTTCTGGTCTAAGCACTAGTTGA
ATCTTCTGGTCTCAGCCAAGCCAAGCCTTTGGTCTCATTCTCATCCAAGGGAATCAAGCCACCAC
CCAAGTGTCAGCTCTCGTTATTCCCACCCCAGCCTCTGGTCTTTACCTTTGTTCTTTAGCTTTGG
TCTTTAGCTTTGGTCTTTAGCTTTGGTCTTTAGCTTTGGTCAAAT
Found at i:331395 original size:17 final size:17
Alignment explanation
Indices: 331373--331412 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
331363 CCAATCCACT
331373 GGTTTGTTTGATCTACC
1 GGTTTGTTTGATCTACC
331390 GGTTTGTTTGATCTACC
1 GGTTTGTTTGATCTACC
331407 GGTTTG
1 GGTTTG
331413 ATCCTAATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.10, C:0.15, G:0.28, T:0.47
Consensus pattern (17 bp):
GGTTTGTTTGATCTACC
Left flanking sequence: Indices 330873 -- 331372
AGAAGAAGAAATGAGATTCTTGTAATTTATTACTACCTAGTTAAACCCAACCTAGGTCAAGCTTA
GGATACCTTTGGAAATAGTTACTAGAGTTCTTAGAGAGGGTTTTCAATCCAAAGCTTCAGCTTCT
CTTCTAATCCCTCTAATCCCTCAATGTGACTAATGCGGTAATGCTTGCTTCTAATCCTCTAATTC
CTCTATCTAATTCTTTTCTTATTGCCGTAATCCTCTAATGCTGTAATGTCAGCTAGACCAACCCA
GTATTCCTAGGGAGAGCGCCATACCCGGTCTTCCGTTCTAATCCCTTTATCTATCTAATTGCCGT
AATGCGTAATGCGTAATGCCGTAATCCCTTAATCTCGTAATCTCTACATTCCCGTAATGCTCTAA
GGTATGGTCTAAGGCTATGGTCTAATCCACTGTTTTGTTTAATCCACTGTTTTTATCTAGAGGTT
TGATCTCCATGTTTAATCCAATCCACTGCACTGGTCCAATCCACT
Right flanking sequence: Indices 331413 -- 331912
ATCCTAATCCTCTGCTCTGTTTTTATCTACAGGTTTGTCTGATCTATAGGTTTGTCCAATCCCTT
GCCTTGGTCTAATGCACTGCACTGGTCTATGGTCTTCTGGTCTAATCCAATCCCTTGCCTTGGTC
TATTCCATTCCAATCCCTTGGTCTATGGGTCTAAGCACTAGTTGAATCTTCTGGTCTAAGCACTA
GTTGAATCTTCTGGTCTCAGCCAAGCCAAGCCTTTGGTCTCATTCTCATCCAAGGGAATCAAGCC
ACCACCCAAGTGTCAGCTCTCGTTATTCCCACCCCAGCCTCTGGTCTTTACCTTTGTTCTTTAGC
TTTGGTCTTTAGCTTTGGTCTTTAGCTTTGGTCTTTAGCTTTGGTCAAATGCTCTAGTCTAATGC
TCTAGTCTAATGGTCTAGTCTAATGGTCTAATTCCTCTAAGCCTCTGGTCTAATCCCAAGCCTTT
GGTCTAATCCCCATCCTCTGGTCTAATCTAATCCCTCTCCTTTAG
Found at i:331549 original size:23 final size:23
Alignment explanation
Indices: 331515--331568 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
331505 TATGGTCTTC
* ** *
331515 TGGTCTAATCCAATCCCTTGCCT
1 TGGTCTATTCCAATCCAATCCCT
*
331538 TGGTCTATTCCATTCCAATCCCT
1 TGGTCTATTCCAATCCAATCCCT
331561 TGGTCTAT
1 TGGTCTAT
331569 GGGTCTAAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.17, C:0.31, G:0.13, T:0.39
Consensus pattern (23 bp):
TGGTCTATTCCAATCCAATCCCT
Left flanking sequence: Indices 331015 -- 331514
CTAATCCCTCAATGTGACTAATGCGGTAATGCTTGCTTCTAATCCTCTAATTCCTCTATCTAATT
CTTTTCTTATTGCCGTAATCCTCTAATGCTGTAATGTCAGCTAGACCAACCCAGTATTCCTAGGG
AGAGCGCCATACCCGGTCTTCCGTTCTAATCCCTTTATCTATCTAATTGCCGTAATGCGTAATGC
GTAATGCCGTAATCCCTTAATCTCGTAATCTCTACATTCCCGTAATGCTCTAAGGTATGGTCTAA
GGCTATGGTCTAATCCACTGTTTTGTTTAATCCACTGTTTTTATCTAGAGGTTTGATCTCCATGT
TTAATCCAATCCACTGCACTGGTCCAATCCACTGGTTTGTTTGATCTACCGGTTTGTTTGATCTA
CCGGTTTGATCCTAATCCTCTGCTCTGTTTTTATCTACAGGTTTGTCTGATCTATAGGTTTGTCC
AATCCCTTGCCTTGGTCTAATGCACTGCACTGGTCTATGGTCTTC
Right flanking sequence: Indices 331569 -- 332068
GGGTCTAAGCACTAGTTGAATCTTCTGGTCTAAGCACTAGTTGAATCTTCTGGTCTCAGCCAAGC
CAAGCCTTTGGTCTCATTCTCATCCAAGGGAATCAAGCCACCACCCAAGTGTCAGCTCTCGTTAT
TCCCACCCCAGCCTCTGGTCTTTACCTTTGTTCTTTAGCTTTGGTCTTTAGCTTTGGTCTTTAGC
TTTGGTCTTTAGCTTTGGTCAAATGCTCTAGTCTAATGCTCTAGTCTAATGGTCTAGTCTAATGG
TCTAATTCCTCTAAGCCTCTGGTCTAATCCCAAGCCTTTGGTCTAATCCCCATCCTCTGGTCTAA
TCTAATCCCTCTCCTTTAGTCGTCTAATCATCTAATTCCATTCCTCTACTTTAGTGGTTTAATCC
TCTAATCCTTTGATTCCATTCCTCTAATCCTTATCCTTTGATTCCATTCCTCTAATTCTTTTATC
TAGTTCGTTCTAAATGTGGCTAATGTGAACATTCCTTTGTCTATT
Found at i:331604 original size:25 final size:25
Alignment explanation
Indices: 331570--331624 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
331560 TTGGTCTATG
331570 GGTCTAAGCACTAGTTGAATCTTCT
1 GGTCTAAGCACTAGTTGAATCTTCT
331595 GGTCTAAGCACTAGTTGAATCTTCT
1 GGTCTAAGCACTAGTTGAATCTTCT
331620 GGTCT
1 GGTCT
331625 CAGCCAAGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (25 bp):
GGTCTAAGCACTAGTTGAATCTTCT
Left flanking sequence: Indices 331070 -- 331569
CTATCTAATTCTTTTCTTATTGCCGTAATCCTCTAATGCTGTAATGTCAGCTAGACCAACCCAGT
ATTCCTAGGGAGAGCGCCATACCCGGTCTTCCGTTCTAATCCCTTTATCTATCTAATTGCCGTAA
TGCGTAATGCGTAATGCCGTAATCCCTTAATCTCGTAATCTCTACATTCCCGTAATGCTCTAAGG
TATGGTCTAAGGCTATGGTCTAATCCACTGTTTTGTTTAATCCACTGTTTTTATCTAGAGGTTTG
ATCTCCATGTTTAATCCAATCCACTGCACTGGTCCAATCCACTGGTTTGTTTGATCTACCGGTTT
GTTTGATCTACCGGTTTGATCCTAATCCTCTGCTCTGTTTTTATCTACAGGTTTGTCTGATCTAT
AGGTTTGTCCAATCCCTTGCCTTGGTCTAATGCACTGCACTGGTCTATGGTCTTCTGGTCTAATC
CAATCCCTTGCCTTGGTCTATTCCATTCCAATCCCTTGGTCTATG
Right flanking sequence: Indices 331625 -- 332124
CAGCCAAGCCAAGCCTTTGGTCTCATTCTCATCCAAGGGAATCAAGCCACCACCCAAGTGTCAGC
TCTCGTTATTCCCACCCCAGCCTCTGGTCTTTACCTTTGTTCTTTAGCTTTGGTCTTTAGCTTTG
GTCTTTAGCTTTGGTCTTTAGCTTTGGTCAAATGCTCTAGTCTAATGCTCTAGTCTAATGGTCTA
GTCTAATGGTCTAATTCCTCTAAGCCTCTGGTCTAATCCCAAGCCTTTGGTCTAATCCCCATCCT
CTGGTCTAATCTAATCCCTCTCCTTTAGTCGTCTAATCATCTAATTCCATTCCTCTACTTTAGTG
GTTTAATCCTCTAATCCTTTGATTCCATTCCTCTAATCCTTATCCTTTGATTCCATTCCTCTAAT
TCTTTTATCTAGTTCGTTCTAAATGTGGCTAATGTGAACATTCCTTTGTCTATTAGCTAAACTAC
AGGGATTGGATTGTTCTAGCACTAGGTTGTCTATATGATTGATTG
Found at i:331735 original size:13 final size:13
Alignment explanation
Indices: 331714--331783 Score: 122
Period size: 13 Copynumber: 5.4 Consensus size: 13
331704 CCCCAGCCTC
*
331714 TGGTCTTTACCTT
1 TGGTCTTTAGCTT
*
331727 TGTTCTTTAGCTT
1 TGGTCTTTAGCTT
331740 TGGTCTTTAGCTT
1 TGGTCTTTAGCTT
331753 TGGTCTTTAGCTT
1 TGGTCTTTAGCTT
331766 TGGTCTTTAGCTT
1 TGGTCTTTAGCTT
331779 TGGTC
1 TGGTC
331784 AAATGCTCTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 54 1.00
ACGTcount: A:0.07, C:0.17, G:0.21, T:0.54
Consensus pattern (13 bp):
TGGTCTTTAGCTT
Left flanking sequence: Indices 331214 -- 331713
TGCCGTAATCCCTTAATCTCGTAATCTCTACATTCCCGTAATGCTCTAAGGTATGGTCTAAGGCT
ATGGTCTAATCCACTGTTTTGTTTAATCCACTGTTTTTATCTAGAGGTTTGATCTCCATGTTTAA
TCCAATCCACTGCACTGGTCCAATCCACTGGTTTGTTTGATCTACCGGTTTGTTTGATCTACCGG
TTTGATCCTAATCCTCTGCTCTGTTTTTATCTACAGGTTTGTCTGATCTATAGGTTTGTCCAATC
CCTTGCCTTGGTCTAATGCACTGCACTGGTCTATGGTCTTCTGGTCTAATCCAATCCCTTGCCTT
GGTCTATTCCATTCCAATCCCTTGGTCTATGGGTCTAAGCACTAGTTGAATCTTCTGGTCTAAGC
ACTAGTTGAATCTTCTGGTCTCAGCCAAGCCAAGCCTTTGGTCTCATTCTCATCCAAGGGAATCA
AGCCACCACCCAAGTGTCAGCTCTCGTTATTCCCACCCCAGCCTC
Right flanking sequence: Indices 331784 -- 332283
AAATGCTCTAGTCTAATGCTCTAGTCTAATGGTCTAGTCTAATGGTCTAATTCCTCTAAGCCTCT
GGTCTAATCCCAAGCCTTTGGTCTAATCCCCATCCTCTGGTCTAATCTAATCCCTCTCCTTTAGT
CGTCTAATCATCTAATTCCATTCCTCTACTTTAGTGGTTTAATCCTCTAATCCTTTGATTCCATT
CCTCTAATCCTTATCCTTTGATTCCATTCCTCTAATTCTTTTATCTAGTTCGTTCTAAATGTGGC
TAATGTGAACATTCCTTTGTCTATTAGCTAAACTACAGGGATTGGATTGTTCTAGCACTAGGTTG
TCTATATGATTGATTGTATGGATGAGTCTTCCAGACGTGATTGAATAAGAATTAGATTGATGAGT
GTGAAGCAAATGAGTATGACTCAGTAGATGTAGGGATATTCGTTTTGTTTCTTGCCGGTTTGTTG
GTTTGAAGATACAAGGAATGTGTTTCTTTCCTGCCGGTTTGTTGG
Found at i:331797 original size:26 final size:26
Alignment explanation
Indices: 331742--331797 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
331732 TTTAGCTTTG
** * *
331742 GTCTTTAGCTTTGGTCTTTAGCTTTG
1 GTCTTTAGCTTTGGTCAATAGCTCTA
331768 GTCTTTAGCTTTGGTCAA-ATGCTCTA
1 GTCTTTAGCTTTGGTCAATA-GCTCTA
331794 GTCT
1 GTCT
331798 AATGCTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.12, C:0.18, G:0.21, T:0.48
Consensus pattern (26 bp):
GTCTTTAGCTTTGGTCAATAGCTCTA
Left flanking sequence: Indices 331242 -- 331741
TACATTCCCGTAATGCTCTAAGGTATGGTCTAAGGCTATGGTCTAATCCACTGTTTTGTTTAATC
CACTGTTTTTATCTAGAGGTTTGATCTCCATGTTTAATCCAATCCACTGCACTGGTCCAATCCAC
TGGTTTGTTTGATCTACCGGTTTGTTTGATCTACCGGTTTGATCCTAATCCTCTGCTCTGTTTTT
ATCTACAGGTTTGTCTGATCTATAGGTTTGTCCAATCCCTTGCCTTGGTCTAATGCACTGCACTG
GTCTATGGTCTTCTGGTCTAATCCAATCCCTTGCCTTGGTCTATTCCATTCCAATCCCTTGGTCT
ATGGGTCTAAGCACTAGTTGAATCTTCTGGTCTAAGCACTAGTTGAATCTTCTGGTCTCAGCCAA
GCCAAGCCTTTGGTCTCATTCTCATCCAAGGGAATCAAGCCACCACCCAAGTGTCAGCTCTCGTT
ATTCCCACCCCAGCCTCTGGTCTTTACCTTTGTTCTTTAGCTTTG
Right flanking sequence: Indices 331798 -- 332297
AATGCTCTAGTCTAATGGTCTAGTCTAATGGTCTAATTCCTCTAAGCCTCTGGTCTAATCCCAAG
CCTTTGGTCTAATCCCCATCCTCTGGTCTAATCTAATCCCTCTCCTTTAGTCGTCTAATCATCTA
ATTCCATTCCTCTACTTTAGTGGTTTAATCCTCTAATCCTTTGATTCCATTCCTCTAATCCTTAT
CCTTTGATTCCATTCCTCTAATTCTTTTATCTAGTTCGTTCTAAATGTGGCTAATGTGAACATTC
CTTTGTCTATTAGCTAAACTACAGGGATTGGATTGTTCTAGCACTAGGTTGTCTATATGATTGAT
TGTATGGATGAGTCTTCCAGACGTGATTGAATAAGAATTAGATTGATGAGTGTGAAGCAAATGAG
TATGACTCAGTAGATGTAGGGATATTCGTTTTGTTTCTTGCCGGTTTGTTGGTTTGAAGATACAA
GGAATGTGTTTCTTTCCTGCCGGTTTGTTGGTTTGTAAATACCCG
Found at i:331801 original size:13 final size:13
Alignment explanation
Indices: 331785--331832 Score: 78
Period size: 13 Copynumber: 3.7 Consensus size: 13
331775 GCTTTGGTCA
331785 AATGCTCTAGTCT
1 AATGCTCTAGTCT
331798 AATGCTCTAGTCT
1 AATGCTCTAGTCT
*
331811 AATGGTCTAGTCT
1 AATGCTCTAGTCT
*
331824 AATGGTCTA
1 AATGCTCTA
331833 ATTCCTCTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (13 bp):
AATGCTCTAGTCT
Left flanking sequence: Indices 331285 -- 331784
TAATCCACTGTTTTGTTTAATCCACTGTTTTTATCTAGAGGTTTGATCTCCATGTTTAATCCAAT
CCACTGCACTGGTCCAATCCACTGGTTTGTTTGATCTACCGGTTTGTTTGATCTACCGGTTTGAT
CCTAATCCTCTGCTCTGTTTTTATCTACAGGTTTGTCTGATCTATAGGTTTGTCCAATCCCTTGC
CTTGGTCTAATGCACTGCACTGGTCTATGGTCTTCTGGTCTAATCCAATCCCTTGCCTTGGTCTA
TTCCATTCCAATCCCTTGGTCTATGGGTCTAAGCACTAGTTGAATCTTCTGGTCTAAGCACTAGT
TGAATCTTCTGGTCTCAGCCAAGCCAAGCCTTTGGTCTCATTCTCATCCAAGGGAATCAAGCCAC
CACCCAAGTGTCAGCTCTCGTTATTCCCACCCCAGCCTCTGGTCTTTACCTTTGTTCTTTAGCTT
TGGTCTTTAGCTTTGGTCTTTAGCTTTGGTCTTTAGCTTTGGTCA
Right flanking sequence: Indices 331833 -- 332332
ATTCCTCTAAGCCTCTGGTCTAATCCCAAGCCTTTGGTCTAATCCCCATCCTCTGGTCTAATCTA
ATCCCTCTCCTTTAGTCGTCTAATCATCTAATTCCATTCCTCTACTTTAGTGGTTTAATCCTCTA
ATCCTTTGATTCCATTCCTCTAATCCTTATCCTTTGATTCCATTCCTCTAATTCTTTTATCTAGT
TCGTTCTAAATGTGGCTAATGTGAACATTCCTTTGTCTATTAGCTAAACTACAGGGATTGGATTG
TTCTAGCACTAGGTTGTCTATATGATTGATTGTATGGATGAGTCTTCCAGACGTGATTGAATAAG
AATTAGATTGATGAGTGTGAAGCAAATGAGTATGACTCAGTAGATGTAGGGATATTCGTTTTGTT
TCTTGCCGGTTTGTTGGTTTGAAGATACAAGGAATGTGTTTCTTTCCTGCCGGTTTGTTGGTTTG
TAAATACCCGTTATTTGAGTTTGAGGTAAGATGTGAACATAGGGA
Found at i:331865 original size:19 final size:19
Alignment explanation
Indices: 331826--331895 Score: 86
Period size: 19 Copynumber: 3.5 Consensus size: 19
331816 TCTAGTCTAA
331826 TGGTCTAATTCCTCTAAGCCTC
1 TGGTCTAA-TCC-C-AAGCCTC
*
331848 TGGTCTAATCCCAAGCCTT
1 TGGTCTAATCCCAAGCCTC
* *
331867 TGGTCTAATCCCCATCCTC
1 TGGTCTAATCCCAAGCCTC
331886 TGGTCTAATC
1 TGGTCTAATC
331896 TAATCCCTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
19 32 0.73
20 1 0.02
21 3 0.07
22 8 0.18
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.34
Consensus pattern (19 bp):
TGGTCTAATCCCAAGCCTC
Left flanking sequence: Indices 331326 -- 331825
TTTGATCTCCATGTTTAATCCAATCCACTGCACTGGTCCAATCCACTGGTTTGTTTGATCTACCG
GTTTGTTTGATCTACCGGTTTGATCCTAATCCTCTGCTCTGTTTTTATCTACAGGTTTGTCTGAT
CTATAGGTTTGTCCAATCCCTTGCCTTGGTCTAATGCACTGCACTGGTCTATGGTCTTCTGGTCT
AATCCAATCCCTTGCCTTGGTCTATTCCATTCCAATCCCTTGGTCTATGGGTCTAAGCACTAGTT
GAATCTTCTGGTCTAAGCACTAGTTGAATCTTCTGGTCTCAGCCAAGCCAAGCCTTTGGTCTCAT
TCTCATCCAAGGGAATCAAGCCACCACCCAAGTGTCAGCTCTCGTTATTCCCACCCCAGCCTCTG
GTCTTTACCTTTGTTCTTTAGCTTTGGTCTTTAGCTTTGGTCTTTAGCTTTGGTCTTTAGCTTTG
GTCAAATGCTCTAGTCTAATGCTCTAGTCTAATGGTCTAGTCTAA
Right flanking sequence: Indices 331896 -- 332395
TAATCCCTCTCCTTTAGTCGTCTAATCATCTAATTCCATTCCTCTACTTTAGTGGTTTAATCCTC
TAATCCTTTGATTCCATTCCTCTAATCCTTATCCTTTGATTCCATTCCTCTAATTCTTTTATCTA
GTTCGTTCTAAATGTGGCTAATGTGAACATTCCTTTGTCTATTAGCTAAACTACAGGGATTGGAT
TGTTCTAGCACTAGGTTGTCTATATGATTGATTGTATGGATGAGTCTTCCAGACGTGATTGAATA
AGAATTAGATTGATGAGTGTGAAGCAAATGAGTATGACTCAGTAGATGTAGGGATATTCGTTTTG
TTTCTTGCCGGTTTGTTGGTTTGAAGATACAAGGAATGTGTTTCTTTCCTGCCGGTTTGTTGGTT
TGTAAATACCCGTTATTTGAGTTTGAGGTAAGATGTGAACATAGGGAAGATGTTTCATCTGGAAA
GTGAAACAAGTTAGTATTCTTAGCGTAATGCCAGCTACTAGTCCA
Found at i:332555 original size:17 final size:17
Alignment explanation
Indices: 332533--332566 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
332523 TCTTTACTTC
332533 TAATCCCTCGAAT-TCAG
1 TAATCCC-CGAATGTCAG
332550 TAATCCCCGAATGTCAG
1 TAATCCCCGAATGTCAG
332567 CTAGTCCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (17 bp):
TAATCCCCGAATGTCAG
Left flanking sequence: Indices 332033 -- 332532
CTAAATGTGGCTAATGTGAACATTCCTTTGTCTATTAGCTAAACTACAGGGATTGGATTGTTCTA
GCACTAGGTTGTCTATATGATTGATTGTATGGATGAGTCTTCCAGACGTGATTGAATAAGAATTA
GATTGATGAGTGTGAAGCAAATGAGTATGACTCAGTAGATGTAGGGATATTCGTTTTGTTTCTTG
CCGGTTTGTTGGTTTGAAGATACAAGGAATGTGTTTCTTTCCTGCCGGTTTGTTGGTTTGTAAAT
ACCCGTTATTTGAGTTTGAGGTAAGATGTGAACATAGGGAAGATGTTTCATCTGGAAAGTGAAAC
AAGTTAGTATTCTTAGCGTAATGCCAGCTACTAGTCCAACCCAACCTCTGCACTCAGTATTCTTA
GCGAAATGCCAGCTATTCCCACTTCTGCACTCAGTAGAAGAGCGTAATGTCAGCGGTATCCACCC
AAGCTACCAATCCCAAGGATAGCATCCCAGCCCGTTCTTTACTTC
Right flanking sequence: Indices 332567 -- 333066
CTAGTCCAACTCCTTCCTCTAATCCTCCAATCTCCTAATTCCTCTAATCTTCCAATCCCCGAATG
TCAGCTAGTTCCTTTGTTTGTCAGCTAATCCCACAATGTCAGCTAATCCTCTAATGCCGTAATGT
CAGCTAGTCCCATTCTTCCCTCTACAGGATAGAGAAGTTCCGTGTTCCGTTACTCCCGTATATTG
CTTGATATTGAGTAGCGATGGTCTTACCAGATAGCTCTATCTATCAAGGTAAGTCTGGGTGGGTT
ATCCGTCGTGATCCCTGGTGTGTTAGATCTGATCTGGGTTATCCGTTGTGATGATAGTGAGGATG
TTCTATTTCAGAGATATATATCTTCTCGGAATAGCAGGAGAGGCTCATAGGTCTTCTCGGAATAT
TAGGAGGGACTGATTGTCTAGTGTTGGATTTGATTCCTTGGATTTGATAGTGATGCATTTGATTC
CTTGGATTCCTGTGATAAGGATAATGAGAATGAGAATGCTGGAAA
Found at i:333077 original size:24 final size:24
Alignment explanation
Indices: 333056--333125 Score: 113
Period size: 24 Copynumber: 2.9 Consensus size: 24
333046 TGAGAATGAG
333056 AATGCTGGAAATGGTGCTAATGCT
1 AATGCTGGAAATGGTGCTAATGCT
333080 AATGCTGGAAATGGTGCTAATGCT
1 AATGCTGGAAATGGTGCTAATGCT
* * *
333104 AATGGTGCAAATGGTGCAAATG
1 AATGCTGGAAATGGTGCTAATG
333126 GTGCTAATGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.27
Consensus pattern (24 bp):
AATGCTGGAAATGGTGCTAATGCT
Left flanking sequence: Indices 332556 -- 333055
CCGAATGTCAGCTAGTCCAACTCCTTCCTCTAATCCTCCAATCTCCTAATTCCTCTAATCTTCCA
ATCCCCGAATGTCAGCTAGTTCCTTTGTTTGTCAGCTAATCCCACAATGTCAGCTAATCCTCTAA
TGCCGTAATGTCAGCTAGTCCCATTCTTCCCTCTACAGGATAGAGAAGTTCCGTGTTCCGTTACT
CCCGTATATTGCTTGATATTGAGTAGCGATGGTCTTACCAGATAGCTCTATCTATCAAGGTAAGT
CTGGGTGGGTTATCCGTCGTGATCCCTGGTGTGTTAGATCTGATCTGGGTTATCCGTTGTGATGA
TAGTGAGGATGTTCTATTTCAGAGATATATATCTTCTCGGAATAGCAGGAGAGGCTCATAGGTCT
TCTCGGAATATTAGGAGGGACTGATTGTCTAGTGTTGGATTTGATTCCTTGGATTTGATAGTGAT
GCATTTGATTCCTTGGATTCCTGTGATAAGGATAATGAGAATGAG
Right flanking sequence: Indices 333126 -- 333625
GTGCTAATGCTAATGCTAATGTTGGAAATGATGCAAAGGGAAATGGTGCAAAGGGAAATGGTGCA
TTTGATGCATTTGATTCCTTGGATTCCTTGGATTCCTTTGTTTGATTATTCCTTTGTTTGATTAT
TATATTAATCCCTTTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCTTTCCTT
TGTTTGATTATTCCTTTGTTTGTTTGATTGCTTTTCTTCATTCCTGTGTGTGATTGATTCCTTTG
ATTACGAGGGATAGTTCCAAGAAGGTTGGTTGTTGGTTGTATTACTCCTTGAAAAGGTCCATTTC
CCGGACGATCAATCTGGCTCATTCATGAGACTGAGGATATCCTTTCTCGGGTGCAAATGAAATAT
ATCGATCTAAGGATTGGTTTCTCTAATGTTGATATACTGCATATCGGTATAAGACTAGAAGATAC
AAGGAAAGCAAGCTACCCAGTTGAATGAAATACCAGTTGAATGAA
Found at i:333079 original size:18 final size:17
Alignment explanation
Indices: 333076--333136 Score: 72
Period size: 18 Copynumber: 3.6 Consensus size: 17
333066 ATGGTGCTAA
333076 TGCTAATGCTGGAAATGG
1 TGCTAATGCT-GAAATGG
333094 TGCTAATGCT--AATGG
1 TGCTAATGCTGAAATGG
* *
333109 TGCAAATGGTGCAAATGG
1 TGCTAATGCTG-AAATGG
333127 TGCTAATGCT
1 TGCTAATGCT
333137 AATGCTAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 13 0.36
18 23 0.64
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (17 bp):
TGCTAATGCTGAAATGG
Left flanking sequence: Indices 332576 -- 333075
CTCCTTCCTCTAATCCTCCAATCTCCTAATTCCTCTAATCTTCCAATCCCCGAATGTCAGCTAGT
TCCTTTGTTTGTCAGCTAATCCCACAATGTCAGCTAATCCTCTAATGCCGTAATGTCAGCTAGTC
CCATTCTTCCCTCTACAGGATAGAGAAGTTCCGTGTTCCGTTACTCCCGTATATTGCTTGATATT
GAGTAGCGATGGTCTTACCAGATAGCTCTATCTATCAAGGTAAGTCTGGGTGGGTTATCCGTCGT
GATCCCTGGTGTGTTAGATCTGATCTGGGTTATCCGTTGTGATGATAGTGAGGATGTTCTATTTC
AGAGATATATATCTTCTCGGAATAGCAGGAGAGGCTCATAGGTCTTCTCGGAATATTAGGAGGGA
CTGATTGTCTAGTGTTGGATTTGATTCCTTGGATTTGATAGTGATGCATTTGATTCCTTGGATTC
CTGTGATAAGGATAATGAGAATGAGAATGCTGGAAATGGTGCTAA
Right flanking sequence: Indices 333137 -- 333636
AATGCTAATGTTGGAAATGATGCAAAGGGAAATGGTGCAAAGGGAAATGGTGCATTTGATGCATT
TGATTCCTTGGATTCCTTGGATTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCC
CTTTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCTTTCCTTTGTTTGATTAT
TCCTTTGTTTGTTTGATTGCTTTTCTTCATTCCTGTGTGTGATTGATTCCTTTGATTACGAGGGA
TAGTTCCAAGAAGGTTGGTTGTTGGTTGTATTACTCCTTGAAAAGGTCCATTTCCCGGACGATCA
ATCTGGCTCATTCATGAGACTGAGGATATCCTTTCTCGGGTGCAAATGAAATATATCGATCTAAG
GATTGGTTTCTCTAATGTTGATATACTGCATATCGGTATAAGACTAGAAGATACAAGGAAAGCAA
GCTACCCAGTTGAATGAAATACCAGTTGAATGAAATACCAGTTTT
Found at i:333101 original size:9 final size:9
Alignment explanation
Indices: 333089--333134 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
333079 TAATGCTGGA
333089 AATGGTGCT
1 AATGGTGCT
333098 AA---TGCT
1 AATGGTGCT
*
333104 AATGGTGCA
1 AATGGTGCT
*
333113 AATGGTGCA
1 AATGGTGCT
333122 AATGGTGCT
1 AATGGTGCT
333131 AATG
1 AATG
333135 CTAATGCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 6 0.19
9 26 0.81
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.28
Consensus pattern (9 bp):
AATGGTGCT
Left flanking sequence: Indices 332589 -- 333088
TCCTCCAATCTCCTAATTCCTCTAATCTTCCAATCCCCGAATGTCAGCTAGTTCCTTTGTTTGTC
AGCTAATCCCACAATGTCAGCTAATCCTCTAATGCCGTAATGTCAGCTAGTCCCATTCTTCCCTC
TACAGGATAGAGAAGTTCCGTGTTCCGTTACTCCCGTATATTGCTTGATATTGAGTAGCGATGGT
CTTACCAGATAGCTCTATCTATCAAGGTAAGTCTGGGTGGGTTATCCGTCGTGATCCCTGGTGTG
TTAGATCTGATCTGGGTTATCCGTTGTGATGATAGTGAGGATGTTCTATTTCAGAGATATATATC
TTCTCGGAATAGCAGGAGAGGCTCATAGGTCTTCTCGGAATATTAGGAGGGACTGATTGTCTAGT
GTTGGATTTGATTCCTTGGATTTGATAGTGATGCATTTGATTCCTTGGATTCCTGTGATAAGGAT
AATGAGAATGAGAATGCTGGAAATGGTGCTAATGCTAATGCTGGA
Right flanking sequence: Indices 333135 -- 333634
CTAATGCTAATGTTGGAAATGATGCAAAGGGAAATGGTGCAAAGGGAAATGGTGCATTTGATGCA
TTTGATTCCTTGGATTCCTTGGATTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAAT
CCCTTTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCTTTCCTTTGTTTGATT
ATTCCTTTGTTTGTTTGATTGCTTTTCTTCATTCCTGTGTGTGATTGATTCCTTTGATTACGAGG
GATAGTTCCAAGAAGGTTGGTTGTTGGTTGTATTACTCCTTGAAAAGGTCCATTTCCCGGACGAT
CAATCTGGCTCATTCATGAGACTGAGGATATCCTTTCTCGGGTGCAAATGAAATATATCGATCTA
AGGATTGGTTTCTCTAATGTTGATATACTGCATATCGGTATAAGACTAGAAGATACAAGGAAAGC
AAGCTACCCAGTTGAATGAAATACCAGTTGAATGAAATACCAGTT
Found at i:333167 original size:15 final size:15
Alignment explanation
Indices: 333149--333190 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
333139 TGCTAATGTT
*
333149 GGAAATGATGCAAAG
1 GGAAATGGTGCAAAG
333164 GGAAATGGTGCAAAG
1 GGAAATGGTGCAAAG
333179 GGAAATGGTGCA
1 GGAAATGGTGCA
333191 TTTGATGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.40, C:0.07, G:0.38, T:0.14
Consensus pattern (15 bp):
GGAAATGGTGCAAAG
Left flanking sequence: Indices 332649 -- 333148
TTGTCAGCTAATCCCACAATGTCAGCTAATCCTCTAATGCCGTAATGTCAGCTAGTCCCATTCTT
CCCTCTACAGGATAGAGAAGTTCCGTGTTCCGTTACTCCCGTATATTGCTTGATATTGAGTAGCG
ATGGTCTTACCAGATAGCTCTATCTATCAAGGTAAGTCTGGGTGGGTTATCCGTCGTGATCCCTG
GTGTGTTAGATCTGATCTGGGTTATCCGTTGTGATGATAGTGAGGATGTTCTATTTCAGAGATAT
ATATCTTCTCGGAATAGCAGGAGAGGCTCATAGGTCTTCTCGGAATATTAGGAGGGACTGATTGT
CTAGTGTTGGATTTGATTCCTTGGATTTGATAGTGATGCATTTGATTCCTTGGATTCCTGTGATA
AGGATAATGAGAATGAGAATGCTGGAAATGGTGCTAATGCTAATGCTGGAAATGGTGCTAATGCT
AATGGTGCAAATGGTGCAAATGGTGCTAATGCTAATGCTAATGTT
Right flanking sequence: Indices 333191 -- 333690
TTTGATGCATTTGATTCCTTGGATTCCTTGGATTCCTTTGTTTGATTATTCCTTTGTTTGATTAT
TATATTAATCCCTTTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCTTTCCTT
TGTTTGATTATTCCTTTGTTTGTTTGATTGCTTTTCTTCATTCCTGTGTGTGATTGATTCCTTTG
ATTACGAGGGATAGTTCCAAGAAGGTTGGTTGTTGGTTGTATTACTCCTTGAAAAGGTCCATTTC
CCGGACGATCAATCTGGCTCATTCATGAGACTGAGGATATCCTTTCTCGGGTGCAAATGAAATAT
ATCGATCTAAGGATTGGTTTCTCTAATGTTGATATACTGCATATCGGTATAAGACTAGAAGATAC
AAGGAAAGCAAGCTACCCAGTTGAATGAAATACCAGTTGAATGAAATACCAGTTTTTGAGTTTGA
GGAAGCCCGTTTGAGTAGGTAGTTTTGCCGTTCGAGTAGTTAGCC
Found at i:333215 original size:9 final size:9
Alignment explanation
Indices: 333203--333228 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
333193 TGATGCATTT
333203 GATTCCTTG
1 GATTCCTTG
333212 GATTCCTTG
1 GATTCCTTG
333221 GATTCCTT
1 GATTCCTT
333229 TGTTTGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (9 bp):
GATTCCTTG
Left flanking sequence: Indices 332703 -- 333202
GTCCCATTCTTCCCTCTACAGGATAGAGAAGTTCCGTGTTCCGTTACTCCCGTATATTGCTTGAT
ATTGAGTAGCGATGGTCTTACCAGATAGCTCTATCTATCAAGGTAAGTCTGGGTGGGTTATCCGT
CGTGATCCCTGGTGTGTTAGATCTGATCTGGGTTATCCGTTGTGATGATAGTGAGGATGTTCTAT
TTCAGAGATATATATCTTCTCGGAATAGCAGGAGAGGCTCATAGGTCTTCTCGGAATATTAGGAG
GGACTGATTGTCTAGTGTTGGATTTGATTCCTTGGATTTGATAGTGATGCATTTGATTCCTTGGA
TTCCTGTGATAAGGATAATGAGAATGAGAATGCTGGAAATGGTGCTAATGCTAATGCTGGAAATG
GTGCTAATGCTAATGGTGCAAATGGTGCAAATGGTGCTAATGCTAATGCTAATGTTGGAAATGAT
GCAAAGGGAAATGGTGCAAAGGGAAATGGTGCATTTGATGCATTT
Right flanking sequence: Indices 333229 -- 333728
TGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCTTTCCTTTGTTTGATTATTCCTTTGT
TTGATTATTATATTAATCCCTTTCCTTTGTTTGATTATTCCTTTGTTTGTTTGATTGCTTTTCTT
CATTCCTGTGTGTGATTGATTCCTTTGATTACGAGGGATAGTTCCAAGAAGGTTGGTTGTTGGTT
GTATTACTCCTTGAAAAGGTCCATTTCCCGGACGATCAATCTGGCTCATTCATGAGACTGAGGAT
ATCCTTTCTCGGGTGCAAATGAAATATATCGATCTAAGGATTGGTTTCTCTAATGTTGATATACT
GCATATCGGTATAAGACTAGAAGATACAAGGAAAGCAAGCTACCCAGTTGAATGAAATACCAGTT
GAATGAAATACCAGTTTTTGAGTTTGAGGAAGCCCGTTTGAGTAGGTAGTTTTGCCGTTCGAGTA
GTTAGCCAGTTTGAGTAGTTAGCCAGTTTGAGTTAGCTTACTTTG
Found at i:333243 original size:16 final size:16
Alignment explanation
Indices: 333222--333302 Score: 78
Period size: 16 Copynumber: 5.2 Consensus size: 16
333212 GATTCCTTGG
333222 ATTCCTTTGTTTGATT
1 ATTCCTTTGTTTGATT
333238 ATTCCTTTGTTTGATT
1 ATTCCTTTGTTTGATT
* ** ***
333254 ATT-ATATT-AATCCCT
1 ATTCCT-TTGTTTGATT
333269 -TTCCTTTGTTTGATT
1 ATTCCTTTGTTTGATT
333284 ATTCCTTTGTTTGATT
1 ATTCCTTTGTTTGATT
333300 ATT
1 ATT
333303 ATATTAATCC
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
14 4 0.08
15 6 0.12
16 39 0.80
ACGTcount: A:0.16, C:0.14, G:0.10, T:0.60
Consensus pattern (16 bp):
ATTCCTTTGTTTGATT
Left flanking sequence: Indices 332722 -- 333221
AGGATAGAGAAGTTCCGTGTTCCGTTACTCCCGTATATTGCTTGATATTGAGTAGCGATGGTCTT
ACCAGATAGCTCTATCTATCAAGGTAAGTCTGGGTGGGTTATCCGTCGTGATCCCTGGTGTGTTA
GATCTGATCTGGGTTATCCGTTGTGATGATAGTGAGGATGTTCTATTTCAGAGATATATATCTTC
TCGGAATAGCAGGAGAGGCTCATAGGTCTTCTCGGAATATTAGGAGGGACTGATTGTCTAGTGTT
GGATTTGATTCCTTGGATTTGATAGTGATGCATTTGATTCCTTGGATTCCTGTGATAAGGATAAT
GAGAATGAGAATGCTGGAAATGGTGCTAATGCTAATGCTGGAAATGGTGCTAATGCTAATGGTGC
AAATGGTGCAAATGGTGCTAATGCTAATGCTAATGTTGGAAATGATGCAAAGGGAAATGGTGCAA
AGGGAAATGGTGCATTTGATGCATTTGATTCCTTGGATTCCTTGG
Right flanking sequence: Indices 333303 -- 333802
ATATTAATCCCTTTCCTTTGTTTGATTATTCCTTTGTTTGTTTGATTGCTTTTCTTCATTCCTGT
GTGTGATTGATTCCTTTGATTACGAGGGATAGTTCCAAGAAGGTTGGTTGTTGGTTGTATTACTC
CTTGAAAAGGTCCATTTCCCGGACGATCAATCTGGCTCATTCATGAGACTGAGGATATCCTTTCT
CGGGTGCAAATGAAATATATCGATCTAAGGATTGGTTTCTCTAATGTTGATATACTGCATATCGG
TATAAGACTAGAAGATACAAGGAAAGCAAGCTACCCAGTTGAATGAAATACCAGTTGAATGAAAT
ACCAGTTTTTGAGTTTGAGGAAGCCCGTTTGAGTAGGTAGTTTTGCCGTTCGAGTAGTTAGCCAG
TTTGAGTAGTTAGCCAGTTTGAGTTAGCTTACTTTGCCAAGAGTGAGGTGAGTAGCTCTTTCTTG
TTTTCCTGATACCAAGGAATGAATGCAGAATCCACTGAAACTGCC
Found at i:333275 original size:46 final size:46
Alignment explanation
Indices: 333223--333342 Score: 240
Period size: 46 Copynumber: 2.6 Consensus size: 46
333213 ATTCCTTGGA
333223 TTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCT
1 TTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCT
333269 TTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCT
1 TTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCT
333315 TTCCTTTGTTTGATTATTCCTTTGTTTG
1 TTCCTTTGTTTGATTATTCCTTTGTTTG
333343 TTTGATTGCT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.60
Consensus pattern (46 bp):
TTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCT
Left flanking sequence: Indices 332723 -- 333222
GGATAGAGAAGTTCCGTGTTCCGTTACTCCCGTATATTGCTTGATATTGAGTAGCGATGGTCTTA
CCAGATAGCTCTATCTATCAAGGTAAGTCTGGGTGGGTTATCCGTCGTGATCCCTGGTGTGTTAG
ATCTGATCTGGGTTATCCGTTGTGATGATAGTGAGGATGTTCTATTTCAGAGATATATATCTTCT
CGGAATAGCAGGAGAGGCTCATAGGTCTTCTCGGAATATTAGGAGGGACTGATTGTCTAGTGTTG
GATTTGATTCCTTGGATTTGATAGTGATGCATTTGATTCCTTGGATTCCTGTGATAAGGATAATG
AGAATGAGAATGCTGGAAATGGTGCTAATGCTAATGCTGGAAATGGTGCTAATGCTAATGGTGCA
AATGGTGCAAATGGTGCTAATGCTAATGCTAATGTTGGAAATGATGCAAAGGGAAATGGTGCAAA
GGGAAATGGTGCATTTGATGCATTTGATTCCTTGGATTCCTTGGA
Right flanking sequence: Indices 333343 -- 333842
TTTGATTGCTTTTCTTCATTCCTGTGTGTGATTGATTCCTTTGATTACGAGGGATAGTTCCAAGA
AGGTTGGTTGTTGGTTGTATTACTCCTTGAAAAGGTCCATTTCCCGGACGATCAATCTGGCTCAT
TCATGAGACTGAGGATATCCTTTCTCGGGTGCAAATGAAATATATCGATCTAAGGATTGGTTTCT
CTAATGTTGATATACTGCATATCGGTATAAGACTAGAAGATACAAGGAAAGCAAGCTACCCAGTT
GAATGAAATACCAGTTGAATGAAATACCAGTTTTTGAGTTTGAGGAAGCCCGTTTGAGTAGGTAG
TTTTGCCGTTCGAGTAGTTAGCCAGTTTGAGTAGTTAGCCAGTTTGAGTTAGCTTACTTTGCCAA
GAGTGAGGTGAGTAGCTCTTTCTTGTTTTCCTGATACCAAGGAATGAATGCAGAATCCACTGAAA
CTGCCATAGAACCAGATACAGGGAATTGCCGTAGAACTAGCTAGA
Found at i:333618 original size:16 final size:16
Alignment explanation
Indices: 333597--333634 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
333587 AGCAAGCTAC
333597 CCAGTTGAATGAAATA
1 CCAGTTGAATGAAATA
333613 CCAGTTGAATGAAATA
1 CCAGTTGAATGAAATA
333629 CCAGTT
1 CCAGTT
333635 TTTGAGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.26
Consensus pattern (16 bp):
CCAGTTGAATGAAATA
Left flanking sequence: Indices 333097 -- 333596
TAATGCTAATGGTGCAAATGGTGCAAATGGTGCTAATGCTAATGCTAATGTTGGAAATGATGCAA
AGGGAAATGGTGCAAAGGGAAATGGTGCATTTGATGCATTTGATTCCTTGGATTCCTTGGATTCC
TTTGTTTGATTATTCCTTTGTTTGATTATTATATTAATCCCTTTCCTTTGTTTGATTATTCCTTT
GTTTGATTATTATATTAATCCCTTTCCTTTGTTTGATTATTCCTTTGTTTGTTTGATTGCTTTTC
TTCATTCCTGTGTGTGATTGATTCCTTTGATTACGAGGGATAGTTCCAAGAAGGTTGGTTGTTGG
TTGTATTACTCCTTGAAAAGGTCCATTTCCCGGACGATCAATCTGGCTCATTCATGAGACTGAGG
ATATCCTTTCTCGGGTGCAAATGAAATATATCGATCTAAGGATTGGTTTCTCTAATGTTGATATA
CTGCATATCGGTATAAGACTAGAAGATACAAGGAAAGCAAGCTAC
Right flanking sequence: Indices 333635 -- 334134
TTTGAGTTTGAGGAAGCCCGTTTGAGTAGGTAGTTTTGCCGTTCGAGTAGTTAGCCAGTTTGAGT
AGTTAGCCAGTTTGAGTTAGCTTACTTTGCCAAGAGTGAGGTGAGTAGCTCTTTCTTGTTTTCCT
GATACCAAGGAATGAATGCAGAATCCACTGAAACTGCCATAGAACCAGATACAGGGAATTGCCGT
AGAACTAGCTAGATACAGGGAATTGCCATAGATATCGAAGGAAAGAAAGTCTCAATCAGACAAGG
CAAGTATCGATCAGCCAAGTGAATCCCTCAATCAGCCAAGGAAGAAAGTATGGATCAGCAAAGGA
AAGTATGGATCAGACAAGGAAATCCCTCAATCAGATCATGAAAACAGAGGTTTAAGCCAGAGAAA
TTAGACAGACTGAGCTCCTTTCCTTGTTCGGTAAATCGGTAAACAAGACAGAGGTATGAACTCAA
GCCAGCCAAGGGTTCCTTTCCTAACTCCTGTAACTCAAAACGAGC
Found at i:333699 original size:17 final size:17
Alignment explanation
Indices: 333679--333716 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
333669 TTTGCCGTTC
333679 GAGTAGTTAGCCAGTTT
1 GAGTAGTTAGCCAGTTT
333696 GAGTAGTTAGCCAGTTT
1 GAGTAGTTAGCCAGTTT
333713 GAGT
1 GAGT
333717 TAGCTTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.24, C:0.11, G:0.32, T:0.34
Consensus pattern (17 bp):
GAGTAGTTAGCCAGTTT
Left flanking sequence: Indices 333179 -- 333678
GGAAATGGTGCATTTGATGCATTTGATTCCTTGGATTCCTTGGATTCCTTTGTTTGATTATTCCT
TTGTTTGATTATTATATTAATCCCTTTCCTTTGTTTGATTATTCCTTTGTTTGATTATTATATTA
ATCCCTTTCCTTTGTTTGATTATTCCTTTGTTTGTTTGATTGCTTTTCTTCATTCCTGTGTGTGA
TTGATTCCTTTGATTACGAGGGATAGTTCCAAGAAGGTTGGTTGTTGGTTGTATTACTCCTTGAA
AAGGTCCATTTCCCGGACGATCAATCTGGCTCATTCATGAGACTGAGGATATCCTTTCTCGGGTG
CAAATGAAATATATCGATCTAAGGATTGGTTTCTCTAATGTTGATATACTGCATATCGGTATAAG
ACTAGAAGATACAAGGAAAGCAAGCTACCCAGTTGAATGAAATACCAGTTGAATGAAATACCAGT
TTTTGAGTTTGAGGAAGCCCGTTTGAGTAGGTAGTTTTGCCGTTC
Right flanking sequence: Indices 333717 -- 334216
TAGCTTACTTTGCCAAGAGTGAGGTGAGTAGCTCTTTCTTGTTTTCCTGATACCAAGGAATGAAT
GCAGAATCCACTGAAACTGCCATAGAACCAGATACAGGGAATTGCCGTAGAACTAGCTAGATACA
GGGAATTGCCATAGATATCGAAGGAAAGAAAGTCTCAATCAGACAAGGCAAGTATCGATCAGCCA
AGTGAATCCCTCAATCAGCCAAGGAAGAAAGTATGGATCAGCAAAGGAAAGTATGGATCAGACAA
GGAAATCCCTCAATCAGATCATGAAAACAGAGGTTTAAGCCAGAGAAATTAGACAGACTGAGCTC
CTTTCCTTGTTCGGTAAATCGGTAAACAAGACAGAGGTATGAACTCAAGCCAGCCAAGGGTTCCT
TTCCTAACTCCTGTAACTCAAAACGAGCCAAAGGGAACGGTAACTCCCTTCCCTGGTCACTCCTA
GCTGGTGACTCCTTTCTGCCTAGCTGCAATGCTAAGACTGACAGC
Found at i:333827 original size:25 final size:27
Alignment explanation
Indices: 333799--333861 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 27
333789 CCACTGAAAC
333799 TGCCATAGAAC-C-AGATACAGGGAAT
1 TGCCATAGAACACTAGATACAGGGAAT
*
333824 TGCCGTAGAACTAGCTAGATACAGGGAAT
1 TGCCATAGAAC-A-CTAGATACAGGGAAT
333853 TGCCATAGA
1 TGCCATAGA
333862 TATCGAAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 10 0.31
28 1 0.03
29 21 0.66
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (27 bp):
TGCCATAGAACACTAGATACAGGGAAT
Left flanking sequence: Indices 333299 -- 333798
TATTATATTAATCCCTTTCCTTTGTTTGATTATTCCTTTGTTTGTTTGATTGCTTTTCTTCATTC
CTGTGTGTGATTGATTCCTTTGATTACGAGGGATAGTTCCAAGAAGGTTGGTTGTTGGTTGTATT
ACTCCTTGAAAAGGTCCATTTCCCGGACGATCAATCTGGCTCATTCATGAGACTGAGGATATCCT
TTCTCGGGTGCAAATGAAATATATCGATCTAAGGATTGGTTTCTCTAATGTTGATATACTGCATA
TCGGTATAAGACTAGAAGATACAAGGAAAGCAAGCTACCCAGTTGAATGAAATACCAGTTGAATG
AAATACCAGTTTTTGAGTTTGAGGAAGCCCGTTTGAGTAGGTAGTTTTGCCGTTCGAGTAGTTAG
CCAGTTTGAGTAGTTAGCCAGTTTGAGTTAGCTTACTTTGCCAAGAGTGAGGTGAGTAGCTCTTT
CTTGTTTTCCTGATACCAAGGAATGAATGCAGAATCCACTGAAAC
Right flanking sequence: Indices 333862 -- 334361
TATCGAAGGAAAGAAAGTCTCAATCAGACAAGGCAAGTATCGATCAGCCAAGTGAATCCCTCAAT
CAGCCAAGGAAGAAAGTATGGATCAGCAAAGGAAAGTATGGATCAGACAAGGAAATCCCTCAATC
AGATCATGAAAACAGAGGTTTAAGCCAGAGAAATTAGACAGACTGAGCTCCTTTCCTTGTTCGGT
AAATCGGTAAACAAGACAGAGGTATGAACTCAAGCCAGCCAAGGGTTCCTTTCCTAACTCCTGTA
ACTCAAAACGAGCCAAAGGGAACGGTAACTCCCTTCCCTGGTCACTCCTAGCTGGTGACTCCTTT
CTGCCTAGCTGCAATGCTAAGACTGACAGCAATTGAGGATATTGCTTTCCTAACTGTCTTTCCTA
ATAAAAAGACTAGAGACTAGTCCTCTTAGAACATAACATAAAGATGCCTGCCGAACATATAGAAA
GTGGTTTCTTTCCGAACAGATATAACCGCTTCTTAAAGTCCCGTT
Found at i:333958 original size:23 final size:23
Alignment explanation
Indices: 333925--333980 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 23
333915 GAATCCCTCA
*
333925 ATCAGCCAAGGAAGAAAGTATGG
1 ATCAGCAAAGGAAGAAAGTATGG
333948 ATCAGCAAA-G--GAAAGTATGG
1 ATCAGCAAAGGAAGAAAGTATGG
333968 ATCAG-ACAAGGAA
1 ATCAGCA-AAGGAA
333981 ATCCCTCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
19 1 0.04
20 17 0.61
21 1 0.04
22 1 0.04
23 8 0.29
ACGTcount: A:0.46, C:0.12, G:0.29, T:0.12
Consensus pattern (23 bp):
ATCAGCAAAGGAAGAAAGTATGG
Left flanking sequence: Indices 333425 -- 333924
TATTACTCCTTGAAAAGGTCCATTTCCCGGACGATCAATCTGGCTCATTCATGAGACTGAGGATA
TCCTTTCTCGGGTGCAAATGAAATATATCGATCTAAGGATTGGTTTCTCTAATGTTGATATACTG
CATATCGGTATAAGACTAGAAGATACAAGGAAAGCAAGCTACCCAGTTGAATGAAATACCAGTTG
AATGAAATACCAGTTTTTGAGTTTGAGGAAGCCCGTTTGAGTAGGTAGTTTTGCCGTTCGAGTAG
TTAGCCAGTTTGAGTAGTTAGCCAGTTTGAGTTAGCTTACTTTGCCAAGAGTGAGGTGAGTAGCT
CTTTCTTGTTTTCCTGATACCAAGGAATGAATGCAGAATCCACTGAAACTGCCATAGAACCAGAT
ACAGGGAATTGCCGTAGAACTAGCTAGATACAGGGAATTGCCATAGATATCGAAGGAAAGAAAGT
CTCAATCAGACAAGGCAAGTATCGATCAGCCAAGTGAATCCCTCA
Right flanking sequence: Indices 333981 -- 334480
ATCCCTCAATCAGATCATGAAAACAGAGGTTTAAGCCAGAGAAATTAGACAGACTGAGCTCCTTT
CCTTGTTCGGTAAATCGGTAAACAAGACAGAGGTATGAACTCAAGCCAGCCAAGGGTTCCTTTCC
TAACTCCTGTAACTCAAAACGAGCCAAAGGGAACGGTAACTCCCTTCCCTGGTCACTCCTAGCTG
GTGACTCCTTTCTGCCTAGCTGCAATGCTAAGACTGACAGCAATTGAGGATATTGCTTTCCTAAC
TGTCTTTCCTAATAAAAAGACTAGAGACTAGTCCTCTTAGAACATAACATAAAGATGCCTGCCGA
ACATATAGAAAGTGGTTTCTTTCCGAACAGATATAACCGCTTCTTAAAGTCCCGTTGTTCCTTCC
TCATAAGATAAGCTACTTGTGGAATCCTATCTTTCAGAGACTTATCCCATCCTCTCTCTTTTGTT
TACAGTTGCTCCCAGCATAGGGACAAAGTAAGCTAAATAGGGCTC
Found at i:333963 original size:20 final size:20
Alignment explanation
Indices: 333938--333981 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
333928 AGCCAAGGAA
333938 GAAAGTATGGATCAG-CAAAG
1 GAAAGTATGGATCAGAC-AAG
333958 GAAAGTATGGATCAGACAAG
1 GAAAGTATGGATCAGACAAG
333978 GAAA
1 GAAA
333982 TCCCTCAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.48, C:0.09, G:0.30, T:0.14
Consensus pattern (20 bp):
GAAAGTATGGATCAGACAAG
Left flanking sequence: Indices 333438 -- 333937
AAAGGTCCATTTCCCGGACGATCAATCTGGCTCATTCATGAGACTGAGGATATCCTTTCTCGGGT
GCAAATGAAATATATCGATCTAAGGATTGGTTTCTCTAATGTTGATATACTGCATATCGGTATAA
GACTAGAAGATACAAGGAAAGCAAGCTACCCAGTTGAATGAAATACCAGTTGAATGAAATACCAG
TTTTTGAGTTTGAGGAAGCCCGTTTGAGTAGGTAGTTTTGCCGTTCGAGTAGTTAGCCAGTTTGA
GTAGTTAGCCAGTTTGAGTTAGCTTACTTTGCCAAGAGTGAGGTGAGTAGCTCTTTCTTGTTTTC
CTGATACCAAGGAATGAATGCAGAATCCACTGAAACTGCCATAGAACCAGATACAGGGAATTGCC
GTAGAACTAGCTAGATACAGGGAATTGCCATAGATATCGAAGGAAAGAAAGTCTCAATCAGACAA
GGCAAGTATCGATCAGCCAAGTGAATCCCTCAATCAGCCAAGGAA
Right flanking sequence: Indices 333982 -- 334481
TCCCTCAATCAGATCATGAAAACAGAGGTTTAAGCCAGAGAAATTAGACAGACTGAGCTCCTTTC
CTTGTTCGGTAAATCGGTAAACAAGACAGAGGTATGAACTCAAGCCAGCCAAGGGTTCCTTTCCT
AACTCCTGTAACTCAAAACGAGCCAAAGGGAACGGTAACTCCCTTCCCTGGTCACTCCTAGCTGG
TGACTCCTTTCTGCCTAGCTGCAATGCTAAGACTGACAGCAATTGAGGATATTGCTTTCCTAACT
GTCTTTCCTAATAAAAAGACTAGAGACTAGTCCTCTTAGAACATAACATAAAGATGCCTGCCGAA
CATATAGAAAGTGGTTTCTTTCCGAACAGATATAACCGCTTCTTAAAGTCCCGTTGTTCCTTCCT
CATAAGATAAGCTACTTGTGGAATCCTATCTTTCAGAGACTTATCCCATCCTCTCTCTTTTGTTT
ACAGTTGCTCCCAGCATAGGGACAAAGTAAGCTAAATAGGGCTCT
Found at i:334749 original size:26 final size:26
Alignment explanation
Indices: 334692--334742 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
334682 ACTAAGACTC
334692 TATTTAGGAGGTCAGCAAGCTCTTGA
1 TATTTAGGAGGTCAGCAAGCTCTTGA
334718 TATTTAGGAGGTCAGCAAGCTCTTG
1 TATTTAGGAGGTCAGCAAGCTCTTG
334743 TTGTTTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
TATTTAGGAGGTCAGCAAGCTCTTGA
Left flanking sequence: Indices 334192 -- 334691
TAGCTGCAATGCTAAGACTGACAGCAATTGAGGATATTGCTTTCCTAACTGTCTTTCCTAATAAA
AAGACTAGAGACTAGTCCTCTTAGAACATAACATAAAGATGCCTGCCGAACATATAGAAAGTGGT
TTCTTTCCGAACAGATATAACCGCTTCTTAAAGTCCCGTTGTTCCTTCCTCATAAGATAAGCTAC
TTGTGGAATCCTATCTTTCAGAGACTTATCCCATCCTCTCTCTTTTGTTTACAGTTGCTCCCAGC
ATAGGGACAAAGTAAGCTAAATAGGGCTCTTTCTCTTCTTTATTACCCAATTCCAGCTTTCTGAT
CTTAGGCTGAGACGAGCTTGTCCAACCAATCTGATTTAGGAGGTAGAAAGTAACAGCAAAAGGAC
TCACCTTATGGATTAACATGCACTGATATAGGTTTCACAGGTGTCCCTTGTTATCTCAGACTAAA
GGCGACCTTGTTATTTCAAAGGTTCTAACCATGAGACTAAGACTC
Right flanking sequence: Indices 334743 -- 335242
TTGTTTACTTTGCTTTGTTATTCCCATCCTTTCCGTGATATACCCCAATCCCAAGTTAGTAGATA
CTATGAGTAAGGACTTGGTACATCCTACCTAGCTGCTACTTCCTATCCTACTACTTCCTATCCTA
GCTGCTACTTCCTATCCTACTACTTCCTATCCTTTGTTTCTTTCTTTTCTTGAACTACTAGCTGC
CAACATTCTTCAATGTTCGATGCTAGTAGCTACGGGCGCTCACTCCCCGAGTTCACTCCCTCCAT
TTTACTGCTCTACCCCCTTCGGGGACTCAGGAATCTATGAACCAGTTCGGGATTCTCTATTAGTA
GTTATTTATATCCTAACCATCAAACAGCCCTAGGCCTAGGTCTCAACTAACAAGTTAGGGATTCT
CTTAGACTAGTTCGCTCCAACCTAGTAACCCTAACCCAAAGAGATAGATTCTATTGATTCGAGTG
CCAAGTGCTAGGGAACGGAACAGAGTTACCTATGCTTTCTACCCT
Found at i:334863 original size:15 final size:15
Alignment explanation
Indices: 334843--334905 Score: 90
Period size: 15 Copynumber: 3.9 Consensus size: 15
334833 TACCTAGCTG
334843 CTACTTCCTATCCTA
1 CTACTTCCTATCCTA
334858 CTACTTCCTATCCTA
1 CTACTTCCTATCCTA
334873 GCTGCTACTTCCTATCCTA
1 ----CTACTTCCTATCCTA
334892 CTACTTCCTATCCT
1 CTACTTCCTATCCT
334906 TTGTTTCTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
15 29 0.66
19 15 0.34
ACGTcount: A:0.17, C:0.40, G:0.03, T:0.40
Consensus pattern (15 bp):
CTACTTCCTATCCTA
Left flanking sequence: Indices 334343 -- 334842
CGCTTCTTAAAGTCCCGTTGTTCCTTCCTCATAAGATAAGCTACTTGTGGAATCCTATCTTTCAG
AGACTTATCCCATCCTCTCTCTTTTGTTTACAGTTGCTCCCAGCATAGGGACAAAGTAAGCTAAA
TAGGGCTCTTTCTCTTCTTTATTACCCAATTCCAGCTTTCTGATCTTAGGCTGAGACGAGCTTGT
CCAACCAATCTGATTTAGGAGGTAGAAAGTAACAGCAAAAGGACTCACCTTATGGATTAACATGC
ACTGATATAGGTTTCACAGGTGTCCCTTGTTATCTCAGACTAAAGGCGACCTTGTTATTTCAAAG
GTTCTAACCATGAGACTAAGACTCTATTTAGGAGGTCAGCAAGCTCTTGATATTTAGGAGGTCAG
CAAGCTCTTGTTGTTTACTTTGCTTTGTTATTCCCATCCTTTCCGTGATATACCCCAATCCCAAG
TTAGTAGATACTATGAGTAAGGACTTGGTACATCCTACCTAGCTG
Right flanking sequence: Indices 334906 -- 335405
TTGTTTCTTTCTTTTCTTGAACTACTAGCTGCCAACATTCTTCAATGTTCGATGCTAGTAGCTAC
GGGCGCTCACTCCCCGAGTTCACTCCCTCCATTTTACTGCTCTACCCCCTTCGGGGACTCAGGAA
TCTATGAACCAGTTCGGGATTCTCTATTAGTAGTTATTTATATCCTAACCATCAAACAGCCCTAG
GCCTAGGTCTCAACTAACAAGTTAGGGATTCTCTTAGACTAGTTCGCTCCAACCTAGTAACCCTA
ACCCAAAGAGATAGATTCTATTGATTCGAGTGCCAAGTGCTAGGGAACGGAACAGAGTTACCTAT
GCTTTCTACCCTAAGTGCGAGAGGGAACGGAGTGAAGGGACCGACCTAAGGGAACGAAGAGACCA
AGGTGAGGACACACTTGGGATTCTATTCCAAGGTTTTTTTAACGCTTGGGATTCTATTCCAAGGT
TCTTATGACCTGGGGCTTAAAAAGACCAAGGTGAGGACACACTTG
Found at i:334874 original size:34 final size:34
Alignment explanation
Indices: 334830--334905 Score: 145
Period size: 34 Copynumber: 2.3 Consensus size: 34
334820 ACTTGGTACA
334830 TCCTA-CCTAGCTGCTACTTCCTATCCTACTACT
1 TCCTATCCTAGCTGCTACTTCCTATCCTACTACT
334863 TCCTATCCTAGCTGCTACTTCCTATCCTACTACT
1 TCCTATCCTAGCTGCTACTTCCTATCCTACTACT
334897 TCCTATCCT
1 TCCTATCCT
334906 TTGTTTCTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 5 0.12
34 37 0.88
ACGTcount: A:0.17, C:0.39, G:0.05, T:0.38
Consensus pattern (34 bp):
TCCTATCCTAGCTGCTACTTCCTATCCTACTACT
Left flanking sequence: Indices 334330 -- 334829
GAACAGATATAACCGCTTCTTAAAGTCCCGTTGTTCCTTCCTCATAAGATAAGCTACTTGTGGAA
TCCTATCTTTCAGAGACTTATCCCATCCTCTCTCTTTTGTTTACAGTTGCTCCCAGCATAGGGAC
AAAGTAAGCTAAATAGGGCTCTTTCTCTTCTTTATTACCCAATTCCAGCTTTCTGATCTTAGGCT
GAGACGAGCTTGTCCAACCAATCTGATTTAGGAGGTAGAAAGTAACAGCAAAAGGACTCACCTTA
TGGATTAACATGCACTGATATAGGTTTCACAGGTGTCCCTTGTTATCTCAGACTAAAGGCGACCT
TGTTATTTCAAAGGTTCTAACCATGAGACTAAGACTCTATTTAGGAGGTCAGCAAGCTCTTGATA
TTTAGGAGGTCAGCAAGCTCTTGTTGTTTACTTTGCTTTGTTATTCCCATCCTTTCCGTGATATA
CCCCAATCCCAAGTTAGTAGATACTATGAGTAAGGACTTGGTACA
Right flanking sequence: Indices 334906 -- 335405
TTGTTTCTTTCTTTTCTTGAACTACTAGCTGCCAACATTCTTCAATGTTCGATGCTAGTAGCTAC
GGGCGCTCACTCCCCGAGTTCACTCCCTCCATTTTACTGCTCTACCCCCTTCGGGGACTCAGGAA
TCTATGAACCAGTTCGGGATTCTCTATTAGTAGTTATTTATATCCTAACCATCAAACAGCCCTAG
GCCTAGGTCTCAACTAACAAGTTAGGGATTCTCTTAGACTAGTTCGCTCCAACCTAGTAACCCTA
ACCCAAAGAGATAGATTCTATTGATTCGAGTGCCAAGTGCTAGGGAACGGAACAGAGTTACCTAT
GCTTTCTACCCTAAGTGCGAGAGGGAACGGAGTGAAGGGACCGACCTAAGGGAACGAAGAGACCA
AGGTGAGGACACACTTGGGATTCTATTCCAAGGTTTTTTTAACGCTTGGGATTCTATTCCAAGGT
TCTTATGACCTGGGGCTTAAAAAGACCAAGGTGAGGACACACTTG
Found at i:334882 original size:19 final size:19
Alignment explanation
Indices: 334830--334891 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
334820 ACTTGGTACA
334830 TCCTA-CCTAGCTGCTACT
1 TCCTATCCTAGCTGCTACT
334848 TCCTATCCTA----CTACT
1 TCCTATCCTAGCTGCTACT
334863 TCCTATCCTAGCTGCTACT
1 TCCTATCCTAGCTGCTACT
334882 TCCTATCCTA
1 TCCTATCCTA
334892 CTACTTCCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
15 15 0.38
18 5 0.13
19 19 0.49
ACGTcount: A:0.18, C:0.39, G:0.06, T:0.37
Consensus pattern (19 bp):
TCCTATCCTAGCTGCTACT
Left flanking sequence: Indices 334330 -- 334829
GAACAGATATAACCGCTTCTTAAAGTCCCGTTGTTCCTTCCTCATAAGATAAGCTACTTGTGGAA
TCCTATCTTTCAGAGACTTATCCCATCCTCTCTCTTTTGTTTACAGTTGCTCCCAGCATAGGGAC
AAAGTAAGCTAAATAGGGCTCTTTCTCTTCTTTATTACCCAATTCCAGCTTTCTGATCTTAGGCT
GAGACGAGCTTGTCCAACCAATCTGATTTAGGAGGTAGAAAGTAACAGCAAAAGGACTCACCTTA
TGGATTAACATGCACTGATATAGGTTTCACAGGTGTCCCTTGTTATCTCAGACTAAAGGCGACCT
TGTTATTTCAAAGGTTCTAACCATGAGACTAAGACTCTATTTAGGAGGTCAGCAAGCTCTTGATA
TTTAGGAGGTCAGCAAGCTCTTGTTGTTTACTTTGCTTTGTTATTCCCATCCTTTCCGTGATATA
CCCCAATCCCAAGTTAGTAGATACTATGAGTAAGGACTTGGTACA
Right flanking sequence: Indices 334892 -- 335391
CTACTTCCTATCCTTTGTTTCTTTCTTTTCTTGAACTACTAGCTGCCAACATTCTTCAATGTTCG
ATGCTAGTAGCTACGGGCGCTCACTCCCCGAGTTCACTCCCTCCATTTTACTGCTCTACCCCCTT
CGGGGACTCAGGAATCTATGAACCAGTTCGGGATTCTCTATTAGTAGTTATTTATATCCTAACCA
TCAAACAGCCCTAGGCCTAGGTCTCAACTAACAAGTTAGGGATTCTCTTAGACTAGTTCGCTCCA
ACCTAGTAACCCTAACCCAAAGAGATAGATTCTATTGATTCGAGTGCCAAGTGCTAGGGAACGGA
ACAGAGTTACCTATGCTTTCTACCCTAAGTGCGAGAGGGAACGGAGTGAAGGGACCGACCTAAGG
GAACGAAGAGACCAAGGTGAGGACACACTTGGGATTCTATTCCAAGGTTTTTTTAACGCTTGGGA
TTCTATTCCAAGGTTCTTATGACCTGGGGCTTAAAAAGACCAAGG
Found at i:336687 original size:16 final size:16
Alignment explanation
Indices: 336666--336697 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
336656 TGCTATCCTG
336666 ACATGGAACTAGAACA
1 ACATGGAACTAGAACA
336682 ACATGGAACTAGAACA
1 ACATGGAACTAGAACA
336698 CCTTCAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.19, T:0.12
Consensus pattern (16 bp):
ACATGGAACTAGAACA
Left flanking sequence: Indices 336166 -- 336665
TCACTTACCCAGCAAACTCTTCTCCTTTCCTCAAAGCTACATTAGCCCCTCAATCTGCCGGGTCG
GCTAAGGCAGAACAAGAACAAGATATAGATATTAGATGCTGAGAAGAGAAAGGTTGATCAGCTGA
CATTGAGCTTGGTTGACTAGCTGCATTAGTTCAGCTGCAGTAGATATATGCAATGCTTGGTTGAG
AAGAGCTTGGTTGATTGGAACTTGGTTAACTAGCTGACATTGGGATTGGAGCTTGGTTGACTGAG
AAGATTTAGCTGACATTGCTCTTTGATTGAGATGAGAAGAAAGAGCTTACATTGTTCTTCCTTGG
TTTAGTTGATTGAGTTCAGCTGCAGTAGATCTATTAGATGCTAGATGAGAAGAGAAAGGTACAGA
TCTTCTAGCTAACAATCCGGAATAAAGGAATCAATGAAGCTATCCAGACATTGGCTAAGACACCG
GTTTGGTTGACTTTCCAGACAATAGAAAAGAATGCTGCTATCCTG
Right flanking sequence: Indices 336698 -- 337197
CCTTCAGCTTTCAGGAATCAATACTGCTATCCGGACATGAACTAGTACACCGGTTTCCTTATCGA
ACTAAATGAAGCTATCTGCTCAGACATTGGTGGTTAAGCATTGCTATCCGGAATGAAATAAAGGA
ATCAATCAATACAGCTATCCGGAATCTAAGATCTTAAACTCTTCATTTAAACATACTCAAGACTT
GGTAGTTCACTGCGTTACCTCCTCTTAGTACGCTCACGTAGTTCCCTAGACGTAAAGTTTAGCAA
TATGACAGCTATTACCGTACTACTTGTTTACCTTTACTCATTAGTTGCTTGAGCCTATGATAGAT
TATCCATCTGAGTGCTCTATCCATCGTGAAACCCTAGACTTTCATCAACACAAACAACACTAGCT
ATCTAAACCAACACCTATACGAAACCCTTAGCAAGACCTAAGTGCTTACCTTAGAAAAAGCTAGG
AAACTCAAACCTCTAACTAGCTGCCTATTATCTCAGAGCTTACTT
Found at i:338314 original size:23 final size:23
Alignment explanation
Indices: 338288--338360 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
338278 CACACTGAAA
338288 AGAGGCTTGGCTTTCAATGAATT
1 AGAGGCTTGGCTTTCAATGAATT
* *
338311 AGAGGTTTGGCTTTCGATGAATT
1 AGAGGCTTGGCTTTCAATGAATT
*
338334 AGAGGCTTGGCCTTCAATGAATT
1 AGAGGCTTGGCTTTCAATGAATT
338357 AGAG
1 AGAG
338361 TGCAGAAATG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (23 bp):
AGAGGCTTGGCTTTCAATGAATT
Left flanking sequence: Indices 337788 -- 338287
CGAACCGAGGTGAAGCTTGAATTTCCGTTCTAAACGAACCGAGGTTCAGAGTGTCCGGATCATAC
TAAGAAGAAAGGCAGGTAGATTCATCCTTTTTGTGTTTTGTTTCATTCCCAAACTATAATCAGTA
TCTTTCTTCTAAATTTCCTGTAATTTATGCGAAATTTTCTTTTGAATTTTACCTGCATCCTACGT
TCAGGTTGGTCGGGCACCCTCCGTTGACGACTTTACAGGGATAGCCCCGGTGAAGCGAGAAGTCC
AGTGGTTGCGGTACACATCTATGGTACTTTGACTCCTGATAGAGGTAGATTCCTCCGGCTTAGAA
TACCTAGAAAGTCGATCCTCTTGTGACCTGTTATGGTGGAAGCCCACGCCATGAGAAAGGACCCC
GTCCATCGTGGATGCATGAACTATGCGAGATAGCTGTGATATCTCAGTTCACCGCTCTTGATCAT
AGGATCTCCGCCGGGATCATCCACGTGGGCCAGGTCACACTGAAA
Right flanking sequence: Indices 338361 -- 338860
TGCAGAAATGTGTGGTAAGGGCTCTACTCTAAAAGGGGAGGATGGGAGTACTCTCAAAGGGGAGG
AAGGGAGTTAGTGAATAAGGAATCCGAGTATGGAGCAACCCCTAATGTGAGAAATATAACCACAG
CTAATGCTATTTGAACACTTTGATAATTAGTATCCGGAACACTATCAGGAATCTTTATTTCTTTA
AAAGGAAGGGCATCCTTATACGTTGAATCTAACTGAGTATTATTAATAGAATCAGGCATAGATAT
GGTATGCTTATCGAACCCGCTAAAAACATAATTGTCTGGATCCACATAGAAATCTTTGAGAAACT
CTTCAAAGCTGTGATCAAACACGTGATTCACATAATCCAAAATTTCTGAAAATGGGCAAAAACTA
TGCAAAATAGTCAACCCAATACCAAATTGAACAACAATTAGGAATCGACCATAAAACCCATTATG
ACATGTAATGGCTTCAAGAAAAACCCGGTTTTGTGCAGTTAATAA
Found at i:338419 original size:24 final size:24
Alignment explanation
Indices: 338385--338433 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
338375 GTAAGGGCTC
*
338385 TACTCTAAAAGGGGAGGATGGGAG
1 TACTCTAAAAGGGGAGGAAGGGAG
*
338409 TACTCTCAAAGGGGAGGAAGGGAG
1 TACTCTAAAAGGGGAGGAAGGGAG
338433 T
1 T
338434 TAGTGAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.41, T:0.16
Consensus pattern (24 bp):
TACTCTAAAAGGGGAGGAAGGGAG
Left flanking sequence: Indices 337885 -- 338384
GTGTTTTGTTTCATTCCCAAACTATAATCAGTATCTTTCTTCTAAATTTCCTGTAATTTATGCGA
AATTTTCTTTTGAATTTTACCTGCATCCTACGTTCAGGTTGGTCGGGCACCCTCCGTTGACGACT
TTACAGGGATAGCCCCGGTGAAGCGAGAAGTCCAGTGGTTGCGGTACACATCTATGGTACTTTGA
CTCCTGATAGAGGTAGATTCCTCCGGCTTAGAATACCTAGAAAGTCGATCCTCTTGTGACCTGTT
ATGGTGGAAGCCCACGCCATGAGAAAGGACCCCGTCCATCGTGGATGCATGAACTATGCGAGATA
GCTGTGATATCTCAGTTCACCGCTCTTGATCATAGGATCTCCGCCGGGATCATCCACGTGGGCCA
GGTCACACTGAAAAGAGGCTTGGCTTTCAATGAATTAGAGGTTTGGCTTTCGATGAATTAGAGGC
TTGGCCTTCAATGAATTAGAGTGCAGAAATGTGTGGTAAGGGCTC
Right flanking sequence: Indices 338434 -- 338933
TAGTGAATAAGGAATCCGAGTATGGAGCAACCCCTAATGTGAGAAATATAACCACAGCTAATGCT
ATTTGAACACTTTGATAATTAGTATCCGGAACACTATCAGGAATCTTTATTTCTTTAAAAGGAAG
GGCATCCTTATACGTTGAATCTAACTGAGTATTATTAATAGAATCAGGCATAGATATGGTATGCT
TATCGAACCCGCTAAAAACATAATTGTCTGGATCCACATAGAAATCTTTGAGAAACTCTTCAAAG
CTGTGATCAAACACGTGATTCACATAATCCAAAATTTCTGAAAATGGGCAAAAACTATGCAAAAT
AGTCAACCCAATACCAAATTGAACAACAATTAGGAATCGACCATAAAACCCATTATGACATGTAA
TGGCTTCAAGAAAAACCCGGTTTTGTGCAGTTAATAACGGAATATTCCGTTTTTTAACAGTTAAA
GTATTAAGACCCTCTCTAGATAGAGTTAAGCCTAGCCTATTTTTC
Found at i:346250 original size:29 final size:28
Alignment explanation
Indices: 346226--346282 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
346216 CCTCGAGTAT
346226 ATAAATAACCTCTTCTTTCAGTCGAGCAC
1 ATAAAT-ACCTCTTCTTTCAGTCGAGCAC
* **
346255 CTTCATACCTCTTCTTTCAGTCGAGCAC
1 ATAAATACCTCTTCTTTCAGTCGAGCAC
346283 TGTAAACCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 22 0.88
29 3 0.12
ACGTcount: A:0.25, C:0.32, G:0.11, T:0.33
Consensus pattern (28 bp):
ATAAATACCTCTTCTTTCAGTCGAGCAC
Left flanking sequence: Indices 345726 -- 346225
GAAATTCTACGCTACGTTGCAAGGAATTCAGTTACAGGTAAATGCTCCATACCCAAGTAGGCTTA
CAATTACAAAGTTGCTCATGATCAAGCGCTTTCTGGGTCGTCTTAGCCCTTGTGATTCACTCTTT
TCCAAAAAATAGCGAAAGAGTTTGGCATACACAGGATTTACTTGCATTCAATTTAGAATTCCAAT
GCGGCGGATAAAAGCATATATCCGCATGGCCCAATCAATAGTTCAAGTCACACACTCCCATAATC
CATTTTCTTTTTAGAGAATGAACTTCAACTATTCGTATCAAATAAGTAATGCAATGTTGTCAAGT
TGAAGAGAAATGTCCAAATACATGTCTTATTCTTTTCAATAATCCATATTTGTATTGTAGCAATG
AAATACTCTTGTTTCGCCCCCCCCAAGTGGAAAAGAAATGATTGGATTACCAATATCTATGATCT
CTCTTTTTTATAAAGGACTCCGTGCCTCTTCGTATCCTCGAGTAT
Right flanking sequence: Indices 346283 -- 346782
TGTAAACCTTGCTTGCGTATCATTAAGAAATGCATTAACATAAATACAGCGGTAAGAAGGGGTAA
TACAAAAGTGTGTAAACTATAAGCGTCAAAGTAGATTGTCCCACACTAGCACTTCCGCGCAATAA
CTCTACCAAAGGCGATCCTATTACAGGAATAGCGTCCGGTACGCCTGTTACAATTTTGACTGCCC
AATAACCAATTTGGTCCCGAGGTAAAGAATAACCAGTTACACCAAAGGATGCAGTCAATACAGCC
AGAACCACACCTGTAACCCAAGTCAATTCGCGGGGTTTTTTAAAACCAACGGTAAGATAGACACG
AAATACGTGCAAGATCATCATTAGAACCATCATACTTGCTGACCATCGGTGGACGGATTAACCAC
CCAAAGTTGGCTTCGGTCATTATGTATTGCACAGAAGAAAAAGCCTCAGTAACAGTAGGGCGGTA
GTAAAACGTCATAGCAAATCCGGTAGCTACTTGTACTAAAAAACA
Found at i:350415 original size:14 final size:16
Alignment explanation
Indices: 350396--350435 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
350386 CTATTTTGCG
*
350396 GAAAGCCGTG-GTGC-
1 GAAAGCAGTGCGTGCA
350410 GAAAGCAGTGCGTGCA
1 GAAAGCAGTGCGTGCA
350426 GAAAGCAGTG
1 GAAAGCAGTG
350436 ATTCATGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.39
15 4 0.17
16 10 0.43
ACGTcount: A:0.30, C:0.17, G:0.40, T:0.12
Consensus pattern (16 bp):
GAAAGCAGTGCGTGCA
Left flanking sequence: Indices 349896 -- 350395
GAGTCTGGCCCAACCAATTACGATAGAAGAGGAATTCCCACTATAGAATAAAAGAGAAGCGATAG
CCGCTCAAACAAAAGTGAGGGGTGCGAAGCAGCTCGAGCATAGCGAGAGGAGCGTGAAGGCATCA
GAACAGGAGCTATCACCACTATGGCTGTCCGTGTCAGAGGCTCGACTGTAAGGAGAGGAGCGAAG
CAGCTCGGTAAGGTTAACTAGCTACTTTACTCACTGCACTCGAAAAAGATAGCAAACCTCCTATA
GCGACAATCGGTCGGCTCCTACGGGTTCCGCCTCCCTCGCCTAGTATAGTTGCGCTTTCTTCTTG
GTCTAGTCTATCTACCCGTCTCTAAGCCCCTCACTTTCCCTTTTTTGAGTACAGGTCAGAGGCTT
GTGCGGCTAGCCCTGTCGGAAACAAGAAAGAAGAGGCTGATGCACCTGCCCGGCAGTGGGTGGAT
TCAGCTCGATCAACTGGGATAGGAGTTTGTTTTCTCTATTTTGCG
Right flanking sequence: Indices 350436 -- 350935
ATTCATGGGAGGGAGCAGCTTCAATAGCTTTGGCTGTGAAAACTCTTGGTCTTGGAGCATCAGTT
CACCCAAGATCGGCAGGACAAATAACTACTAGGTTTGTGCCAGAAAAGCGTCTTGCGTGACGATC
AATGGAAAGAGTCAAAAAAGAAAGAGATTCTGAAGCGTTGGAATCTGACAGGTATCGGTATTGAA
CAGAGGGGGCTGTTCACAAAGCATCCCGTGGTCCGATCCGAGGAGAAAAAGTCTCGGGCTGCCGA
GGTATGGATGGTCCCCACTAAGGCTTGCCTACTGCTTTGTTACCAGAGCTGGATCGATTCAATCT
TTTCCCAGTGCCCATGCTCCTACTACTCCTTCTGCTGCTATTCTGACTCTCATGGATGGTTATGG
TGGTTCCCCAGCTGCTGCTCCTACTCCTTTGGCTGGTGCCAAATCAGGTGACTTTGAAGTTGAAG
CTTGCCCAGTAGGCAGTTAGATGTAACCATGCTGGCATTACTATG
Found at i:364106 original size:27 final size:27
Alignment explanation
Indices: 364068--364132 Score: 130
Period size: 27 Copynumber: 2.4 Consensus size: 27
364058 GAAGAAGAGC
364068 ACCTTCATACCTCTCCTTTCAGTCTTA
1 ACCTTCATACCTCTCCTTTCAGTCTTA
364095 ACCTTCATACCTCTCCTTTCAGTCTTA
1 ACCTTCATACCTCTCCTTTCAGTCTTA
364122 ACCTTCATACC
1 ACCTTCATACC
364133 ATTTGAAGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.20, C:0.38, G:0.03, T:0.38
Consensus pattern (27 bp):
ACCTTCATACCTCTCCTTTCAGTCTTA
Left flanking sequence: Indices 363568 -- 364067
GTCTCAGTGCTTCGCCTAGCATCCCTCGGTAACTCAACCTTCTGACCTCCTTTTCTGTGTTTGGA
AGCAAAAGGACTCCCGTTGAAAGCTGGATGTCTTTACTTACCCTTCTATGGCTAGCCAATGCCAG
AGAACCCTCAAAAAAAGTAGGACTAACTAACTCTGAATTCCACTCTTACCTACCCAGGCCCGGAC
GGCTCGTAAGTAAAGACCGGAATTGTCTATCTGAGTCCTGATTCTTTCCTAACCGATTCCTTTTG
GGTTGCCCTCAAACTGGGGACTTCCTACGTCTTCGCGCTTAGGATTCCTTTCTATATAGGACTAG
GCTCCGGAATAGAGTATTTCAGGTTGGGATCTTACATCCATTCGGGTAAGGTCTTCCCGTAATTG
GAGCTATCGAGTAGGGATCTAGAGGCGAGATGAGTAAGGGTTGGATGTAGCTACAATAGCAAACC
AAGGCATTCAATTTGAGTAACTAATTAATTATTTCGAAGAAGAGC
Right flanking sequence: Indices 364133 -- 364632
ATTTGAAGCACTATCGGATCCGAACGGGAACTGGCTTAAGCGTAATATCCATTTTGTATTCAAGG
ATTCTTCAAGTGATAAAGCGATAACACTCTTACGAATAAGGCGGGTTCTAAAGTCTTCCAGAACC
CATTTGATCTTCCAATCGGGGGGTTCTCTATTGATGAAAAGGCTGTACCTATGGGATAGAGAAAG
AGAATGAGAAAAAAAGGTTAAGCCAAGGATGAATAGCTCAACAAGGAGAGAGGGATTTTATGCAT
TGACCAATACCCAAGAATCAGAGTCTAAATCGACTTTCAGACCATCGATTTGACTCACTCTATGT
TCTTAATGAATCACTATATTATCCCAACATAGAGCCATCCAACTTGAAGAAGCGAAGCAAGCCGT
AAGACCTTACCGAGCTGGACTGGATGAGAGGAACGAAGTGAGGGCAAGAGAATGTTGCCTTTGTG
TCAACTGATTATTGAGATGAGTAAGCCGATTGAGGAGTTTCATTC
Found at i:365045 original size:28 final size:28
Alignment explanation
Indices: 365013--365173 Score: 286
Period size: 28 Copynumber: 5.7 Consensus size: 28
365003 GAGCTCGGTT
365013 CCTCTCCTTTTCAGTCGAGTCCTTCGTA
1 CCTCTCCTTTTCAGTCGAGTCCTTCGTA
365041 CCTCTCCTTTTCAGTCGAGTCCTTCGTA
1 CCTCTCCTTTTCAGTCGAGTCCTTCGTA
365069 CCTCTCCTTTTCAGTCGAGTCCTTCGTA
1 CCTCTCCTTTTCAGTCGAGTCCTTCGTA
365097 CCTCTCCTTTTCAGTCGAGTCCTTCGTA
1 CCTCTCCTTTTCAGTCGAGTCCTTCGTA
***
365125 CCTCTCCTGGCACAGTCGAGTCCTTCGTA
1 CCTCTCCT-TTTCAGTCGAGTCCTTCGTA
365154 CCTCTCCTTTTCAGTCGAGT
1 CCTCTCCTTTTCAGTCGAGT
365174 ATATAAATTA
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
28 101 0.80
29 25 0.20
ACGTcount: A:0.11, C:0.36, G:0.16, T:0.37
Consensus pattern (28 bp):
CCTCTCCTTTTCAGTCGAGTCCTTCGTA
Left flanking sequence: Indices 364513 -- 365012
AGCAAGCCGTAAGACCTTACCGAGCTGGACTGGATGAGAGGAACGAAGTGAGGGCAAGAGAATGT
TGCCTTTGTGTCAACTGATTATTGAGATGAGTAAGCCGATTGAGGAGTTTCATTCCATATAGCGG
GCAAACCTGACTTTGCAGCGCTGGCAGCTTCAAGCTCAACAGGCTGGACGGACTTACTGGAGTGA
TTCAATTAAGCAATAAATCCCGCTTTGCGCCTTATTATGGTCAGATTGAAAGGACGGGGCTATCT
TGGTTTAAGACATCTATCTTTCTTTTGTTTGGAAATGGCTTATGCATTAAGTAGTACGCCAGGAT
TAATGTAATAGAACGACTCTACCATAAGCGTAACTCACTAAGAATCCTAAAGGGGATGGATGAAG
GGAGTAAGAGACCGAGGCTTTGGTGCCTAATTAGGCTTCCTTCCTAAAGTGTGGTGTGGTCTAAA
CCGGTACTGAAGTTCCATAGACTCAAGTAAAAGACGAGCTCGGTT
Right flanking sequence: Indices 365174 -- 365673
ATATAAATTACCTCTCCGGAAAGAGCATCTAAATAACATTTTGAAATGTGCATAGCGTAAGGTGC
TGTAGTAATGAAATTATCGTGAACTGTGTAGACAGGTGCACCAAGTTGACATATATAAAATATCA
TAGACATGGCTATATGAGCATCTTTCTGATGAATGAAGTTGGCAAAGGTAGAAGTATGAGTCTTC
CTTCGATCCTGATCTTCAGTGGGAATTCGTAGAGTCACTTGTCGCTTTAAGGGCACAGGCTAGTT
TACTTAGATTAGCAAACTCGTGAAAACCCTAGACTCAGTCCTCTTATCCCGCCTCGAAAGAGGGT
CCTACCCTACGCCCGAAACAACAACAAGAATCGCCTGAGCCAATTAGCTGTTGCCGACCGTGCTT
CACTCCAATGGATTGAACCCTGGGACTCTATACTGGATTTAGCTGCATAGCTCGTGTCAGTACGC
ACACACCAGTGAACCTGTACTGACTTTCGCACTTGACGCTGCGGA
Found at i:369587 original size:13 final size:13
Alignment explanation
Indices: 369566--369601 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
369556 TGATAGCATA
369566 GTCCTTCCCTTCG
1 GTCCTTCCCTTCG
*
369579 GTTCTTCCCTTCG
1 GTCCTTCCCTTCG
369592 GTCCTTCCCT
1 GTCCTTCCCT
369602 CACCCACAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.44, G:0.14, T:0.42
Consensus pattern (13 bp):
GTCCTTCCCTTCG
Left flanking sequence: Indices 369066 -- 369565
TGAAAGAGTTTTCTCTTTCTTCTCTTTTTCCCTTTGTAACCAAAGCACTACGACAAGTATGATTC
AAGAAAGAAAGGTACAGAAAGAAAGCTAGAACTCAAAGAGTTATAGGATGGTAACATCTAACAAG
AATAGTTACATACAGGAATAGGATCGATCCTAGTTATGAGCTACTTCCTTCTGTTGTGCAACCCA
CAAGCGAAGGTTCTTAGCAATCCTTGTATTCTTGTCCACTTATGCAACAAGGAGTTAGGGATCTA
AGACTTGCTCTCATCTGTCGCAAGGTCAAGTGAGCCACTTCGTGCCTTTATGGTCTCTCATGTTG
TAAGGAGTCAGAATCTAGGTCCCCGTACTCGACTCAAAGACAGGTATGGTAGTCGCTTAGTTGCT
CAACTATGGAGTGAACTCCCTAGCTTAGATTATAGCTTTAGATCGCTTAGAGAGGACGGCACATT
TCATAAGATGAAAAGTATACTTGAGCCATATACTTTGATAGCATA
Right flanking sequence: Indices 369602 -- 370101
CACCCACAACTGAATAGAATACGTCCCCAATCTCCTCTCTCCAAGCCCTACCTTTTACCTTTCTC
TGTCTAAGGTCGAGTTAGATTAGACAAATAAGTTACGTTTTCCCGGGATAAATGCTTGTTCGAGT
CTGTGTGACGTAATAGAACAAGTATTCGCGACTAGTACTTCCCTCGGTCTATACTAGGGCTTATT
TCCTCTTCTATATTTCTATTGGCTCTACCGATTAGGTTGAGGTTCGAAGAGAGAAAGAACTCTCC
CTCTTCCCTTCGTTCTATAACTTCCTCGCTTGCTTCGTTTTGATATGAGGTTTCATTTATGAAAG
GTTCGGGTCTTCTAGGTTTGCTATCTCATTTCATTCCCTGGGTAATCCCTAGTGACTGAGTGCTT
CCGACAACAACTCGTAAGGTAAGCCGTTTTGTGAGCTAGCTTGCTCGTAACCAGTGTTATGTAAG
CCCCTACTACTGCCCATATCAAGGATCAGACAGCCTCCCCTTTTT
Found at i:377441 original size:18 final size:18
Alignment explanation
Indices: 377418--377469 Score: 95
Period size: 18 Copynumber: 2.9 Consensus size: 18
377408 AGGTAACTCA
377418 TTAGCTACAACTACTTAC
1 TTAGCTACAACTACTTAC
*
377436 TTAGCTACAACTACTCAC
1 TTAGCTACAACTACTTAC
377454 TTAGCTACAACTACTT
1 TTAGCTACAACTACTT
377470 CCTTTGGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.33
Consensus pattern (18 bp):
TTAGCTACAACTACTTAC
Left flanking sequence: Indices 376918 -- 377417
AAACTAGCTTGGTTGACTTCCTTGGTTGAGTAGCTGACAAAGGAACTAGTTGACTAGCTTAGCTG
ACTAGCTGACAAAGTACCGAGTTACCTCCCCCACACAGAAGGTGCTCACTCGTACAACCTAAAAC
CTTTCCTTTCCCATCATACTAGCTACCAGACTATCCATACTAGTTTACCTTACTTAGCAAAAGAA
AGAGCTGGACTTACTAATAGCTACTAGCTTACCAACGCAAACCCAATCCGGCATCAATCAACCAA
TCCAATACCCAATACTAACAATACCCAATACCCTATCGAGAAATCATATTATATTAGTGCATGAA
AGTTCATTGAAGAAAACAAGGGATAGCTTACCAAGGAAAAGTGCCAACCTAGTACTCCCTTTCCT
AACTAGCTAGAAAACGAACCTCTAACTAGCAGTACTACTGAAAAACGAACCATTACCTTACTAGA
GTATATAGCCACTACCCTCGTGACCCCACAGAAGGAGGTAACTCA
Right flanking sequence: Indices 377470 -- 377969
CCTTTGGTATAACTAAACTACTAGCTTTCGTTACTAATAGAAACTAGCTGTACTTAGCAAACCCA
AGAGAAAACCAACCTGCCGGAAAACCCCTAGCTGGACAACGCAAAACGTTGAGCTGGACTTACTA
ACTCACTAGGGAACAGAGAGCTACAACGAATATTTCTTACCTAGATCGATACATTAACAACCAGG
AAGGAACTAACTCCCTCTTACTGAACTTACTGTTAGCTAGCTTACTTTGGTGAACAACTGTCAAC
AACTGTTAACCCTCTTAACTCTCTTTCCTTAGTTGATTAGCTACAGGTATGATCAATCTTAGAAG
GCTAGCTGACAGTTACCTTACTTTACATACTAGCTAGCTACATTTGCTTTCCTTTCTACCCATTT
CCTAACCATTACCGGCAGTATTATAACTAACAAGTGCTTATGAACTAGTAGAAACTAACGTTGGA
ACTAGCCTATTAGCTACTTGCTATTACCTAGAACTATCACAAACC
Found at i:382505 original size:33 final size:33
Alignment explanation
Indices: 382463--382526 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
382453 GCTACTTCTC
382463 ACTGCTCTAGTCTATTAGCGTAGATAAAGAAGA
1 ACTGCTCTAGTCTATTAGCGTAGATAAAGAAGA
382496 ACTGCTCTAGTCTATTAGCGTAGATAAAGAA
1 ACTGCTCTAGTCTATTAGCGTAGATAAAGAA
382527 TAATCGTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (33 bp):
ACTGCTCTAGTCTATTAGCGTAGATAAAGAAGA
Left flanking sequence: Indices 381963 -- 382462
AAGCAAAATGGATTGATTTCTTTGCTTTATTTCGCTATAGTCAGTCAGTCAGAGAGGGCACTCAG
AGCGAAGGTGTTCAGAGATAGATAAGAAATACCTGGTGCTAGATACACAGAAGGGCGAATATGGG
ATTGGTGTTGCTAGCGCTTGAGGGATGGATGATAGAATGAAATGCATTGGATGGATGCCTTGACT
TGCTGGATCATGGAGGGAATGTGTCCGGGATGGATTGTATTCCAGAATCGGGTAATTCTGCTTGA
ATAATCAGGTAATTCTGCCTTGTCAATGCGGGCAATGGGTTAGCGGGCAAAGCGGGAGAGTTTAC
TATGTAGGGGAGGCTCCTTTCGAACCCTCGCACTATAGTATCCAAACACAGTAGTTTAGTTGGTC
TTCGAACCTTGGTACGGAGTTGCTCGAGTGACTACGAAGAGGTCTTTATGCCCAAGTGTTGATAA
ACTTCTCTCGTCTAATGTAGTAAGTAAGAATCGTGGCTACTTCTC
Right flanking sequence: Indices 382527 -- 383026
TAATCGTTGTCATTGCGTATCATTGCCTAGAGAAATGGGACTCTTTGACTTGACATAGCTTTTCA
ATCAACAAGGCGTCGGGACCAATGAGCCTACATAGTGCCAACTGGACATTTCTTAATGTCGGGTC
GTAGGACGGTATCCTTCGGGCGCTGTACGAAAGAAGATGCTTTGCTTAGTCGGAGTGACATGAAC
TACGTGATGAAGGGCAGAAGTCAAAAGACTATAGTAAAAGAAAGCATTATAAAAGTGCTGTTTTC
AAACAAAAGAATGTCAAGGTTCTCAGACGCTTGGGGATTGTTCGGATTGGGTTTCTCAACTAGCT
TCTTCCCCCTCCCCAGAGATAGAGACGAGCGGATGATAGATGAACCACGTGAAAGGAAACTAGTA
GACGTTACGCTCTTCCCTAGAGGAAAAGGGCTCGGTTAGCGGGATTGGGCTCGGTTAGAGGGATT
TATCGCGGTTCGAGGGACAGAGGGACTCGGAAAGAGGGATTGATT
Found at i:382968 original size:19 final size:19
Alignment explanation
Indices: 382944--382981 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
382934 TAGAGGAAAA
*
382944 GGGCTCGGTTAGCGGGATT
1 GGGCTCGGTTAGAGGGATT
382963 GGGCTCGGTTAGAGGGATT
1 GGGCTCGGTTAGAGGGATT
382982 TATCGCGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.13, G:0.47, T:0.26
Consensus pattern (19 bp):
GGGCTCGGTTAGAGGGATT
Left flanking sequence: Indices 382444 -- 382943
AGAATCGTGGCTACTTCTCACTGCTCTAGTCTATTAGCGTAGATAAAGAAGAACTGCTCTAGTCT
ATTAGCGTAGATAAAGAATAATCGTTGTCATTGCGTATCATTGCCTAGAGAAATGGGACTCTTTG
ACTTGACATAGCTTTTCAATCAACAAGGCGTCGGGACCAATGAGCCTACATAGTGCCAACTGGAC
ATTTCTTAATGTCGGGTCGTAGGACGGTATCCTTCGGGCGCTGTACGAAAGAAGATGCTTTGCTT
AGTCGGAGTGACATGAACTACGTGATGAAGGGCAGAAGTCAAAAGACTATAGTAAAAGAAAGCAT
TATAAAAGTGCTGTTTTCAAACAAAAGAATGTCAAGGTTCTCAGACGCTTGGGGATTGTTCGGAT
TGGGTTTCTCAACTAGCTTCTTCCCCCTCCCCAGAGATAGAGACGAGCGGATGATAGATGAACCA
CGTGAAAGGAAACTAGTAGACGTTACGCTCTTCCCTAGAGGAAAA
Right flanking sequence: Indices 382982 -- 383481
TATCGCGGTTCGAGGGACAGAGGGACTCGGAAAGAGGGATTGATTACTCGAGAAAATAGAGAGTG
TGTGAGTGGTCAAAAGCGACAGACTGAAAAAAAATCTGTTGAAGTCACCGCATCTTCGAACCTTG
GGGACTACTCATGGGTTCACCGCACCCGTAGAAAGAAGCTAAACACTGGATCGCATCCTCATAAG
CTAGTTGAAAGAACTCGTTGGGTTGCGTTAGACCGAACTCTCAAAGTAAACTTCAACGGGATCCG
GTAGCAAAAAAAATGAAAGCAAAGGAAAGGGCTCCGCGCAAGGATAGGAAACCCGATGTCATAGC
CCTACTAGGTCTAACGAGCCTTTGAGGACCGTTGCCCGGGCAAATGGACTAGCTTCACTAAGACT
AAGAAACTAGCTAAACACCGGCACAGCGGATATGAGCACCAGAGGCAATGTGTCGGAAGTAGACG
GAAGGATAAGCGAACTGAAACATCCGAAAGCAAGGGCGAACTAGC
Found at i:386555 original size:20 final size:21
Alignment explanation
Indices: 386516--386556 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
386506 AAGTCACAGT
*
386516 CTTATCCCTTATTCTATTCGA
1 CTTATCCCTTACTCTATTCGA
*
386537 CTTATCCCTTCCT-TATTCGA
1 CTTATCCCTTACTCTATTCGA
386557 TTTCTTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.17, C:0.32, G:0.05, T:0.46
Consensus pattern (21 bp):
CTTATCCCTTACTCTATTCGA
Left flanking sequence: Indices 386016 -- 386515
TGGGCTCGAGAAGGAAGGGGTTAGGCATTAAAAGACGAGTACGACCTTCTCAAAGTAGCAGTAGG
AGGGCTTTTGGCTTGCAATGAAAGACAGAGAAAGGTATTTCTTTCTCGCCCCAAACAAAGGTACA
CAGTTACTCGACTGACTGTAAGGAGAGGAAGGAATTGATACCAGAGAGGGGCTCCTATATTCTGC
TAAAGTAGAATTTGCTCTAGCTCATGAGAGGGTTTTATTACTCGAATGAAATGATAGGGTTGACG
GGAAGACAGACAACCTATTCCTATTGGGGGCCGGGAAGACAGCTCAAAGAGGGTTTTAGAGAAGT
AGTTGATAGACTGCTGGGAAGGAAGACGGAAAGCCCTGATAGATAGGGCGAGGGAAGATCGTCAA
TGGATCCATTTCTATGGGAAGGATCGAACCATGACATGGGAACAGTCTTATCCCTTCTAGCTAAG
TCCATGGGAACGGAACAGTCTTATCCCTTCTATCTAAGTCACAGT
Right flanking sequence: Indices 386557 -- 387056
TTTCTTCAAAACAGTTTGTATTTTGTTCATTCCATCTTCCTGCTCCTCTAAAGCTGGTACAAGCG
CCCTAGTATAGTAGCTTTTCTCCATCCCCTCTTGGGTTGTTTCAGCCCCGCGTCCCCTAATCTGC
TCTCGCTTTTATCGAGTAACCCGCTTGCTGACAAGGGAATGAAAAAGGGACGGTTCATAGCGAAC
AAAGCTTAGTAAGCTGGTCGAGGTCATAAGCCCATCTGCGATTTCCTCACTCGATAGCAACCAAA
CATGGATCAGAGAAGAACTTCTATTTACATTCTTTCTTTCTTTACTTGTTTAGGGGCCGAGGACT
ATGCTTCTCTCTTCCTCATTAGAAATCAGCAGGTTGGTCTAGTAATTAGGGTTAGGCCGTTCCCT
ATGATCTTGTTTGCAGCTTTGTTAACTGGCTTATCAGGATTCGTATCATTGTGAAGGGGATTGGA
CTAAGGTAAATAACATTGCCTTAGTTGATTGGACTACCTAAGCTA
Found at i:388287 original size:14 final size:14
Alignment explanation
Indices: 388268--388295 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
388258 CCGGCTCCAA
388268 GAATCATTTCCTCT
1 GAATCATTTCCTCT
388282 GAATCATTTCCTCT
1 GAATCATTTCCTCT
388296 TATGGTCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (14 bp):
GAATCATTTCCTCT
Left flanking sequence: Indices 387768 -- 388267
ATTGGACTACTCTTCCTAAGGTCAAAAAAGAAGTCCCCAATCCCGGGTCCGGGAAGTGCAATAGC
TTGTTATTCGTTCAAAAGAAAGGTAATTTATGGATCTACCCTAAAGAGAAATAGTATAGGGATTT
CTTTCTCGACTGCTAAGCTAAGAGAGGGTACCCCAGCTACTCGAACAAAGTCAAAAGGGAGGCGA
TAATAGGTTTTTCATTCTTACTAATAAGAATAAGGAATAAGTAAGGGTTACTGCTGATATAATGG
TCTAACTCTTTATCCTATTTTATATTGTTCCTCTCTTCTGGGCTTACTTCTATTTATTAATAAGG
TAAACCCCTCACTCTGACAACTCAAATAAAAAACCAAATGTTCAAAAAAGAACTATCATGACCAT
GCTATGTTTCCCAACCCCGTTACGACCCCTCATCCTTATTATTCAGGTAATAATGTGATTGTGAA
TATCGAACCCACACTCATTTCAGCTATTACTCTTGCCGGCTCCAA
Right flanking sequence: Indices 388296 -- 388795
TATGGTCGGTCCACCTCCTGCACTCTTTTCTATATCTGGGTTAAGAAGGCCCTACTGAACCTGCT
CTGAGTGAGGGGATACTCATCCCACCCTCGCTCTATCAAGCTTCAATATGAGGTAGATAAATATC
TTACCTTGCTGCAGCCCTATTAGCTCTCGCTACTTATTACTTATACTTATCCAGTCACTTAATCC
CTCTTCGCTGGAGCACCTAAGGGACCTTGAGAAATGCGCAGAGTCCCAGAGGTAATAGCTCGTTT
TGTACCTATACCTCTGCCTCCTCTCTTCGCTCGAGTATATAAACAACCTCAACCTCTCCTTTTCA
GTCGAGTATATAAATTACCTCTCCCTAATGGTCTCGTCTTAAATCCCTCGTCCCTCGTCCCTCTT
CCCTCTCCTTTGGCTCGAGCACCTAAACCCTATTAATGATAATGATCATCCCGCGGTTCGCGCAT
CAACACTGATAAATCACCCGTACTGTTAAAACACAAGCCAAATGG
Found at i:400275 original size:12 final size:12
Alignment explanation
Indices: 400255--400306 Score: 86
Period size: 12 Copynumber: 4.3 Consensus size: 12
400245 GTCTAAACCA
400255 ACGAATCAAAAC
1 ACGAATCAAAAC
* *
400267 ACAAATCAAAAA
1 ACGAATCAAAAC
400279 ACGAATCAAAAC
1 ACGAATCAAAAC
400291 ACGAATCAAAAC
1 ACGAATCAAAAC
400303 ACGA
1 ACGA
400307 GTGGAAAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.62, C:0.23, G:0.08, T:0.08
Consensus pattern (12 bp):
ACGAATCAAAAC
Left flanking sequence: Indices 399755 -- 400254
CTTGCTTTTCACTTTTCAATTGAAAAGCTAACTTCTGGCTTCGAATCCCTCTCTTTCCAAAGAAA
TATGATAAGCTACTTACTTATTCTAGGGTCACTTTGAAATGAAACTCAAATAGCATAAATAGTCT
TCTTTTTCGAAGACTTTAGATTAGAGAATTTTAACAACAACATAGAATTCAATAGAAAATGAAAT
ATTGGAAAGGGAACAAAACAAAACACGAAAGGTAAAAAAGAATCAACATTTTAAGCGCATATGGC
ACGCAAAGGAAATCCTATTTCGACAAGACTTAATCTTAATCGTAGTTCCGATTCCGCTTGGTTCA
CTGATTTCTACTATACGGATTTCGTTTCTCAAGATGTAAATCTTCGATCTTATTTCGGTTCTGTA
CATCGTCCTAAGACTAAGAAAAAAAACTGGGGCTTTCGTCTCGGTAGGTCTTTTTTTGTCTTTTT
TCCCAAAAGAACGCTCATTCATTTCTTTTTTCCCCGTCTAAACCA
Right flanking sequence: Indices 400307 -- 400806
GTGGAAAAACAAAAGGAAAAACGACGGAAACTCCTAAGGAAACACAAATCAAAAAACAGATTCAA
AATAAAGGTGAAGCGCGACAGCGGGCAACGACGTAAGAAGACCAACCGATTGGATAGGATAATGG
ATACATTGTCTAATTTACGTAAATTGCATCAAAAAGTGAATAAATTGCATCAATTTGCAAAATGG
AAAAGATGGTGGAAACGAAAGAAATTGGAAAAATGGGACAAAGTCGGGCCGATGGGGTGTCTTCA
CGACGATACGGCAGAAGAAGAACGAAAGGAAGTGATAGGCCAGGAGGCAGGGAAAAGAGTCGAGT
CGATCAGGCTCGACGACCGGGAGAAGCTAAAGGCTGACGAAGGAAGACCTAAAAAGAAGCAAGGC
TACGGATACCATGACCGATCGCCATCGATAAAGAGAAAGAGGATTCTTTCTAAGTTACTTCAGGT
CGGGGCCTTTCCCAAATACGCTGAGAAAAAAAAGAACATAAACAG
Found at i:404593 original size:20 final size:20
Alignment explanation
Indices: 404568--404613 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
404558 TTAGAGGGAC
**
404568 GAGGGACGAGAGACTCGGAA
1 GAGGGACGAGAGACGAGGAA
*
404588 GAGGGACGAGGGACGAGGAA
1 GAGGGACGAGAGACGAGGAA
404608 GAGGGA
1 GAGGGA
404614 TTTATGGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.52, T:0.02
Consensus pattern (20 bp):
GAGGGACGAGAGACGAGGAA
Left flanking sequence: Indices 404068 -- 404567
GTCGCGTCACTATGGACGGGAACAGCTTACTTATTATTCTTATTATTCTCTTGATTACTTGAGTC
AACTCCTCAACATTTCTTTGAATCACGGGATTTCAATATAACAAACAAGGAAAATGTAAGCCAAC
ACGATCCAGAAAAGAGAGTCTCAAGAGAGACCCAGGCAAGACTGGAGCTGGATCTCCTCCTATCA
GTAAGGCATTTCCAAGCGACCTCTCTTTCTTTTCTTTTGGCTCTTTGAGTGCAACTTAGCGACTG
AAAGACGTGGCATTCCTTTCTTCTTAATCCATCATATCTTGGTAAGCCTTTACTTAATAACTACA
AGTTTATTTGAACACAAGATCCTAGCTATGATCCGTAACGGGTAGTTCTTTTTTATCTATGATCT
ACTTGAGAATAACAAGCAAATAGTATAAGAGGAGGACCAATCAAGTGAAGTTCATACTCTAAATG
AAATCAGAAAGACTTTTTGAATTGCTCATTTCTATTTAGAGGGAC
Right flanking sequence: Indices 404614 -- 405113
TTTATGGAATGTATATCTTACCAAAACTTGATTAAAGATAGGGAAGTGGGAAGCAGTGGGTCATG
CATGTTAGCTATAGCACTTGCATCTTATTTGAATCAATAAAAAGACTTGTTCTTCTTGTCTTTAT
CAGGATTCGTAATAAATAAAGTTCGTGTTCTAAGCTGGTCTTTGTTCTAGCTCGTGTTCTATACA
ACCTCGAATCTATACTCTCTACATACTAGCCTCATTCAACACTATTAGGGGCAACCTCAAACCTC
TAACCAATCCACCCTAGCCCTGACCTATCCTTTGTATTATTCCTTTTTTCTCCTATTGATTTCAG
TCCCAACCCGGAAGCTAGACCGAATGAAAACTAAGGCTCTTTTCTATTCAGCAGGAGATCAGATC
TAAACGAAGCTTTTTAGAACCAATGAACTGGGTATTCCATGGGATCAAGGGGGAAGAGAGGAAAG
AAGGTTCTTAGTCTTTTCCTTCTCCCTCTACTTTTCTTAGATAGC
Found at i:409202 original size:13 final size:13
Alignment explanation
Indices: 409184--409209 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
409174 ACAAATGGAG
409184 TCGGCTGCGTTAC
1 TCGGCTGCGTTAC
409197 TCGGCTGCGTTAC
1 TCGGCTGCGTTAC
409210 GTTGGTAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.31, T:0.31
Consensus pattern (13 bp):
TCGGCTGCGTTAC
Left flanking sequence: Indices 408684 -- 409183
TGTTGAAGGGAAGGTCTTCAGGCATCTTCGAGCTCATCTTGCTAGTTCTCTCGTATGAGAGATAG
AGCTACATTTCATAGGAAGACCGAACGATGGTACGTAGTTGCTTTAAAGTTCACTGGCTTAGAGC
ATCTAGTCGAACTCGAACCCTCGTCTTAGAACTCGTAATCGCTAACACTCAACCTAAAGGCCTCT
CTTATTCATTCAATTCACTAAGTAGGTGTCCCTCGTCCTTCCCTTTCAATGGGTTTTGCTGATAT
GATACTACTCTCCGTTCATTCAGCATTTTCTCCAATTATTCAGCTACGATGAAGAAAGGTGAGTC
CAAGCTCGTGAAAGAGTAGAGTAGTCTATTCACACCAATCCCAGCAGCCCAAGGATAAGGATAAG
TAGCCCAGATAAAGCCTCATCTAGAATGCTGATAGAGAAGGCAGTTTGATAGCTTGAAAGAAAGA
AGGAGAGGTGCAGAGACTCAATGGAAGCTGTTCTAACAAATGGAG
Right flanking sequence: Indices 409210 -- 409709
GTTGGTAAAGGAAGCCTTCTATCGAACCTTCAGAAAGGGCGAGGGTAAACCTATACGTATATACA
TATACTACATATACGTACTGAAAGATTGCTTCAAATGATTTCAAATGATTAATGAGAACCCGAGT
CCGTATATTACGAGAATTTATATATAAGAATCGATATAGTCATTGATCAAATCATTGACCCCAGA
GTCTGATGGATCTTTTCTTTTGAATAACTGATTAATCAGACGAGAATAAAGAGAGAGTCCTCTTC
TACATGTCAATAACGGCAACAATGCAATTGTTAGTAAGAGGAAAATCCGTCGATGTTAAAAGTCG
TGAGGGTTCAAGTCCCTCTATCCCCAAAAAGTATCCTTCGACTCCCTAACTCTTTGCTGCTTTTC
AATTTCAAAGCAGTTTCCAAATTTGTTATCTTTCTCATTTCTTCTCCTTTTTTCCTTTTTCACCA
AAGTACCCAATGGACCCTTTTTTTTGTTGAAGGATTCTGAATCCA
Found at i:418504 original size:23 final size:23
Alignment explanation
Indices: 418474--418518 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
418464 CGGGAATAGT
418474 ACACTAGATAGTAGCTTATTCCA
1 ACACTAGATAGTAGCTTATTCCA
418497 ACACTAGATAGTAGCTTATTCC
1 ACACTAGATAGTAGCTTATTCC
418519 TTTGTTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (23 bp):
ACACTAGATAGTAGCTTATTCCA
Left flanking sequence: Indices 417974 -- 418473
ACCGAAATCATTGATATCGACTAATGGATCCCTTGAATTCGCTAAGCGGTTCTGGTGTAATAATT
TGGAAACAGATTGTTCTCCAGTTTCTGCGCGAGCTCTTCTTAGTGTCCGGTCTACTCTGGGTTGA
CTTCAATTAGCTGATAAATACAGGATCCAAAAGACCTCTGTATTGTTCAGATTAGCTGGAGCGGG
AGGACCCGGTCGTTTCTACATTACGGCTAAAGAAAGAAATTAATAATAAACAAAGAAAGGGAAGA
AGGGCTCATTGAGGAGGTAAAAGCGCATATACTTAGGAGGGAGGGGAACCGACTGTACTTTACAT
GAGGGAACTACGTGACCGGTCAATGTGTAGCTAGTGTTCGGATAGGCGACCGGTGACTGAGGAGT
TTTGTTGTTTGCCTTAGCCGACCTAAGATTGAGGGGCTAAGCAGCTTGTTTTCTGTTTTCTTGTT
TATGCATTGATGGGTTTCTTGAGTGGATGAATGCCCGGGAATAGT
Right flanking sequence: Indices 418519 -- 419018
TTTGTTTCATGTAGCTTGTTTATCTGTCTGTTGGTCTATTGATTGTATATATGCCCGGAAACTGG
TTGTTTGGAGTAGGGTAGCATAGGTCATATAAAGCCGAAGGTGTAGCTAAGGGGAAGGAAGGAGA
AGAGAAAGCTGGGGAAGTGACACGAAGGAGGAACGCAGTTAACGTATTCTACTGACTGACTGTGT
GAGCCGACCCGGCAGATTGAGGGGCTACTTACCTGTTGGGTAGTACCTGGACCAATTGGATCTAA
GTGAGCTTGAGGCATCTCGTACTTATAGAGAGGGAGAGTGCCGTCTCACGTTATCTGATTGGGGA
AGAAGTACTATCCCAACCCAAAGCTTGACTTCCCTTCTGTTGGAGGGAAGGTACTGACCGTACTA
AGAGGAGGGAACGAAGTGAACGACCAAGTCTTGAGTATATTTAAATGAGGTGTTTAGCATCTAAG
ATTCCGGATAGCAATCTCTAACCACCAATGTTTGGATAGCAGCAT
Found at i:419225 original size:89 final size:88
Alignment explanation
Indices: 419052--419240 Score: 267
Period size: 89 Copynumber: 2.1 Consensus size: 88
419042 GAATAGCTCT
* * *
419052 GAAGGTGTAGCTAAGGGGAAGACTCCAGTAGCAGCAGAGGTGTTTAGCATCTAATCGGATAGCAT
1 GAAGGTGTAGCTAAGAGGAAGACTCCAGTAGCAGCAGAGGGGTTTAGAATCTAATCGGATAGCAT
*
419117 TATTGATTCTGTGTAGAGTAGCC
66 TATTGATTCCGTGTAGAGTAGCC
* *
419140 GAAGGTGTAGCTAAGAGGAAGACTCTAGTTA-CAGC-G-GGGGTTTAGAATCTAATTGGATAGCA
1 GAAGGTGTAGCTAAGAGGAAGACTCCAG-TAGCAGCAGAGGGGTTTAGAATCTAATCGGAT---A
419202 GCATTATTGATTCCGTGTAGAGTAGCC
62 GCATTATTGATTCCGTGTAGAGTAGCC
419229 GAAGGTGTAGCT
1 GAAGGTGTAGCT
419241 TTCGAGTGAG
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
86 19 0.21
87 1 0.01
88 30 0.33
89 41 0.45
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (88 bp):
GAAGGTGTAGCTAAGAGGAAGACTCCAGTAGCAGCAGAGGGGTTTAGAATCTAATCGGATAGCAT
TATTGATTCCGTGTAGAGTAGCC
Left flanking sequence: Indices 418552 -- 419051
GTCTATTGATTGTATATATGCCCGGAAACTGGTTGTTTGGAGTAGGGTAGCATAGGTCATATAAA
GCCGAAGGTGTAGCTAAGGGGAAGGAAGGAGAAGAGAAAGCTGGGGAAGTGACACGAAGGAGGAA
CGCAGTTAACGTATTCTACTGACTGACTGTGTGAGCCGACCCGGCAGATTGAGGGGCTACTTACC
TGTTGGGTAGTACCTGGACCAATTGGATCTAAGTGAGCTTGAGGCATCTCGTACTTATAGAGAGG
GAGAGTGCCGTCTCACGTTATCTGATTGGGGAAGAAGTACTATCCCAACCCAAAGCTTGACTTCC
CTTCTGTTGGAGGGAAGGTACTGACCGTACTAAGAGGAGGGAACGAAGTGAACGACCAAGTCTTG
AGTATATTTAAATGAGGTGTTTAGCATCTAAGATTCCGGATAGCAATCTCTAACCACCAATGTTT
GGATAGCAGCATTGATTCCGAATAGCTGAGATTCCGAATAGCTCT
Right flanking sequence: Indices 419241 -- 419740
TTCGAGTGAGCTCCGGGGTAGGAGGCTCGCGAAGGAAGTGGCTTAAGGGGAAGACAGACTCCAGA
GAAAGCGCCAGTGAAAATCTCTTCTTCCTGTTAGTGTTTGTCTACCACATAGCTGAGATTCCGAT
ATAGCTGAAATGAGTGTGGGTTCGATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGAC
AAACTCCTATGTTCCTTTCTTTCATTAAAGTATTTCTTCACAAGTTCCTGGATAACAAGTAGTTG
GGTTTTCTTATTGAATGAAAGGGAAGAGAGGTAGGCCAGAACATCATAAAAAACCTTTCTCTAGG
GGTTATCAAAGAAAAGAACGACAAAAGATCCTATCATTGTAGTCGGCAGGGCCTCATAAAGAGCA
TCATCATCAGAAGTAGAAGAAGGCCTAAGGAGAACATTTCGAAAATACGCGACTCTTGGACTTAC
GTACTCTAAGGGAAGCTATTACGATCATTAGTTATAGAAAGGCTC
Found at i:421829 original size:36 final size:36
Alignment explanation
Indices: 421788--421890 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 36
421778 GTGGGCACAA
*
421788 AAGATAGATAGGTTGGATGAGTAAGCTAGCCAAAAC
1 AAGATAGATAGGTCGGATGAGTAAGCTAGCCAAAAC
421824 AAGATAGATAGGTCGGA--A--AAGCTAGCCAAAAC
1 AAGATAGATAGGTCGGATGAGTAAGCTAGCCAAAAC
*
421856 AAGATAGATAGGTCGGATGAGTCAGCTAGCCAAAA
1 AAGATAGATAGGTCGGATGAGTAAGCTAGCCAAAA
421891 ACGACCAGGT
Statistics
Matches: 61, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
32 31 0.51
34 2 0.03
36 28 0.46
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.17
Consensus pattern (36 bp):
AAGATAGATAGGTCGGATGAGTAAGCTAGCCAAAAC
Left flanking sequence: Indices 421288 -- 421787
TGATATTATATGGCGAAATCCACTTTCGTGCGAAATCAACTAAACCAAGGAAGAACAATGTAAGC
TCTTTCTTCTCAATCAAAGAGCAATGTCAGCTAAATCTTCGGTAACCAGTTCCCTTTCGTTCTAT
TTCCTGGAGGTTTAGCAGCTATTTTCGATCGGATAGCTCGCGAGAAAGAGAAGAGCGAAAGAGCA
AGAACAGAAAGGAAAGAAAAGTTGACTTAGGGTTGCCTTGTGACCGGATAGATATATAGAGAGAG
GGAAAGAGCCATCTCTATTGGTTACCGTAGGGTAGAGCAGGGGAGAGCTCAATTTCTTCTTTTAT
CGTAGGGTGCTAAAATTCTTCTTTTATTGTAGAATAATAGACAAGCTCTATTTGGTTAACCCGAA
AACCTGTTGGTACTCCGGGATTTCACCCCAGGCATTGCGTCCTGATGAATCTTGGTGCAAACTCC
AGGCCGAGGCCTGATGAATCTTGGTGCAAAGTGCCGTGGGCACAA
Right flanking sequence: Indices 421891 -- 422390
ACGACCAGGTATTGTCCTGATTCAAATTGCAGGCCAGGCATTACGTCCTGATGAAAACTTGGTGC
AAAAAGCAACCAAGCTTAGTAACTCGGTGCATTCTTCTTCAAATTCCAGGCATAGCCGGAAGTAG
TACCCGAAAGGGGAAAGCCAATTCCCGGATAAGGGCAGGATAATCCTTGCTCCCGGACGAGGTAT
AGGGAAACCTAGGCTTTTGGAGGAGGCATCCCTAACTGAAAAACGTTAGGATGGGATTGAGCACC
ATAAACCGAATCCACATCGCCCTCTTCGGGAGGGTCAGGGCCGAGAACCCAATCTAACTTACGGT
TAGGGGACCGCCGGGAAAAGATCCTGGATGGGGTATAGGGAAATCCTAGAAAAAGCCTCATCCGG
AAGAAGCCAAGCTTGGGAGGAGTCATTCTAACTTCAAAATGTGCCGTTTGGGATGTTGACCCGTA
AACAGAATCCAAAGGTCCCAGAAATGGGACAGAGGTACCCCGCAA
Found at i:423546 original size:35 final size:34
Alignment explanation
Indices: 423414--423549 Score: 118
Period size: 35 Copynumber: 4.0 Consensus size: 34
423404 ACTCAAAAGA
** *
423414 AAGCCACCTTCGGGTGGGGTGCCGGGGATCC-TAACT
1 AAGCCACCTT-GGGTGGGGT-TAGGGG-CCCATAACT
* * *
423450 AAACCACCTTGTGTGGGGTTAGGGGCACATAACT
1 AAGCCACCTTGGGTGGGGTTAGGGGCCCATAACT
** * *
423484 AAGCTGCC-T-GCTGGGG-TAGGGGTCCATAACT
1 AAGCCACCTTGGGTGGGGTTAGGGGCCCATAACT
423515 AAGCCACCTTCGGGTGGGGTTAGGGGCCCATAACT
1 AAGCCACCTT-GGGTGGGGTTAGGGGCCCATAACT
423550 CAAAGCATGG
Statistics
Matches: 78, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
31 19 0.24
32 6 0.08
33 2 0.03
34 20 0.26
35 22 0.28
36 9 0.12
ACGTcount: A:0.21, C:0.24, G:0.34, T:0.21
Consensus pattern (34 bp):
AAGCCACCTTGGGTGGGGTTAGGGGCCCATAACT
Left flanking sequence: Indices 422914 -- 423413
GAGCTCGGTAAACAGTTCTTTTATCCGATATTTCCACGCATCTTTTATCCGCGGTAGTAGCTCGT
TCACATTTGTGTTCGAGAACGCCTGGTCTTGAGGGGGGGCCAGGCAACAGGAGTCCCGACGGGAA
GAATTAGCTTTTCTCTGTATTTGTACAGCACAGCGGGGATCCAGTGCGGAAGGGGGGAACCTGGA
ACCTTTCCTCTCTGGCACATTCGAGTCCTCTGTCCCTCTCCTTTCACTCGAGTACTTTCGTACCT
CTCGAGAAATCTTTTCTCGTAGATAGAGAAGTCTTCATTTTTCCGAAAGTCTTTTATCCTAGATA
GAGAAGTCTTCTAGATGCCAAGTAATCTGTCTAGCTGTCTTTCTTGAAAGATTGAGAAAGAAGGG
CCCAGGTCGTAGCGCAGGTAACCCCTTACTAAGATCGTACAAGAATGCATTTACTGGATGACCGG
GCAAGGCGGACTCTCACAGGGGTTAGGGGACCATAACTCAAAAGA
Right flanking sequence: Indices 423550 -- 424049
CAAAGCATGGAAGCGCTCAGGGTTATCATATAGATATATGGAGCTACTCCCTTACTAATGCAGTT
TTTTTGGGGCTACTTAGTACTCTCTTGGGCTTCCGCTTTCGTGAGCTTTAGCTTAGGCTCAGGAT
ACTGTCTGTAGTGAACGAAGTTTAGGCTAAATGCAGCTTTATTTGTAGTGAACCAGGATCTTTCA
AGAAACATAAATGGAAGAGACTGTTTGTGGCTGCGTCTAAACCTATGGGAAAGAATGGGTTACCA
TTAGAGTTATGGCTTGGTGGAGGGAGACCTCTCAATCCATACTTGAAGGGAATCATAATCCATTT
GGGATAAGCTTAAGCCTAAAGAACTCCATATTATTCCCAATGAGATGACTTTTGATGGTGAAATC
TCTATCAACGAATACACTGTTCTCCACAATCCAATTGTGGTGAAAGTGGCTTCATTGGTATTGTA
AAGTAGCCTTAAACGACCATGTCAATTTGGAGGAGTTATTATCAG
Found at i:444563 original size:24 final size:24
Alignment explanation
Indices: 444531--444579 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
444521 GATATTCCAT
* *
444531 TTTGAGAGAAGGGTTCGAGACATC
1 TTTGAGAGAAGAGTTCGAAACATC
444555 TTTGAGAGAAGAGTTCGAAACATC
1 TTTGAGAGAAGAGTTCGAAACATC
444579 T
1 T
444580 GCCCTTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (24 bp):
TTTGAGAGAAGAGTTCGAAACATC
Left flanking sequence: Indices 444031 -- 444530
CGTGTATGATGGAATCATCAAAGATTTGACCTTTTTGAGCTCTGTCTCTAACTCGCCATAGTCTT
TGGAAAGACGGTAAAGATATATACAAACGAGATATCCAACAACAAGAAGAAGGAAAAGGACTGAA
TAGAGGAACTCCAGAGCATGAAGCGATCTCAGATGTGTCGATATCAATGGTGACTCATTATTTCA
ATGAATCATTTCTGCGGACAGAGGGAGATTGCGTAAACACGTACTCGAAATCTCCCTTATCCGAT
TCCTTTGCGGAAGAAACCACCTTTCCTTCAGAATTTGCCAAGGCCTAACGACCCCCTGCCTAAGA
CCATCCCTAATATCACCCATAATAGCAGAAAAAAGGGATACAAATTTTGGACGGATACCTAGACT
GAGTATCAGCAATAGGTCTGAGAAATTATATCAAAATAGCAAAGTGAAATATTTGTACCCACCCT
GTAGAAGTGAAGAACCACGGCATATATGTTTGGGCGATATTCCAT
Right flanking sequence: Indices 444580 -- 445079
GCCCTTTCTCAACGCATTTCTTTCGATTTAGACAAGGGTTACGTTTTTTCCTCTTTTGGGACGGT
CCTTTTTTTTCAGAACATGGAATGTGAATCAAACCCATGTTTGAATTGAAATCGGGATACTGATG
CAAGTTCTCCCTTTCTGAATCAGATAAATGAATATCTGAAAGAGGTTGACAATGAGTTCTTTCAA
AATGGACCATTTGTCCCTCTGTTAGAGATGTTTCAGAAATGTCTGCGATCGAGTAAAGGAGTCGA
AGACTAATGGACCGGATCGAATTGGGAAATGGAAAGATCTGTACAAGTTATACCTCTCGTCATCA
CTTTGTGGAAAATCGTTAGGTATGAATATGTTAGATACCTCTGACTCGATTGGTCAAATAGTTAC
TCTCTCCAAAAAAGCATGTTTTTTTTTACCGCCGCACAAAGCAAATTTTGTGTTGCGAATGAACA
AGATATTCAGGAATTGTCCATACAAAAAAGAAGAATTCTTGATAC
Found at i:457574 original size:17 final size:17
Alignment explanation
Indices: 457552--457586 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
457542 CCTTTTTTTC
457552 GAAGGAAAGGGATTTGA
1 GAAGGAAAGGGATTTGA
457569 GAAGGAAAGGGATTTGA
1 GAAGGAAAGGGATTTGA
457586 G
1 G
457587 CTTTGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (17 bp):
GAAGGAAAGGGATTTGA
Left flanking sequence: Indices 457052 -- 457551
TTCTATTTTTGCCTAAGCTAATAGGCTTCGGGTAAGGGTCGACTCATAGGTAGAGCAATTAATTA
CAAAGCTAACAGTTCATTTGCCGGACCTGGATTAGAACCTACAGGTTTAGGAATTCCCGTATGTT
TTTTATAGTCAATTCTGTACTCCTCAAAATGGGCCATTTTCGACCAATTGATACCCAAAATCACG
GGAAAACGTAACTGATTTCTCTCGTTTTTTTCAATCGTGAAAAAACGTCTCTTCTATGTCATTTC
GTTTTTTGCTACTTCTCCCTGTCAGGGTAAAAACGGACTTTCTAAAGGTAAATGCTCTATTTTGC
TTACTTGTGCCGCTATATGATTGATCGTTTTTTCTACTCGAATTTAGGTAAAATGTATTGATTAC
ACGAACTCAAAGAATAGGGAGTAATAGATTTCATTTCCTATCATTTCCTTATTCGGCTGGGTATT
ATGTCCACGAGACTTTGTATTGGATTGATTTTTTGCCTTTTTTTC
Right flanking sequence: Indices 457587 -- 458086
CTTTGTAATTGTGTATTGCATTCCCTTGATTCCCCTCGCTGGCGCTGGGGTTGAATACCCGAGGT
GAATGCATTGAGTCTTACTAAATTGGTTCAATAGGATGGATCAATTACAACTGGAACTGAAGCTC
TAGACTTTGAAGCTGGAATTGGTTCTTGGATTGGTTCTTCAATTGGCTCTGGTTCTGGTTTTCCT
ACTAGGTCTTTCAACTATGAACCCAAATAGGAATACAACTATTCATATGGTTCTGTTTAGTAGGG
ATAGGGATACTACTTGCATTCCGTTGTTTGAGTTTTTCTTTTCCCTGGGAAGGGCTAGGGTCTCA
TCCTTCTCTGCTTCATCTATGGCGCCATACGAAGACTTTCATTCTCCTCCTTATGGCCGTAACAA
CCACAGTGATAACACACAAGGTGCAGCCCCTCTCAATACGTCTTATTCTCTTTCGAAAGGCCGTT
CTACTCTCACACTGGTTACGAAAGGAGAAGGAAGGCTGGAACGCC
Found at i:466794 original size:27 final size:27
Alignment explanation
Indices: 466764--466861 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
466754 ACCAAGTGTT
466764 GACCGAAGGGAGAGGAGCGAAGCACTC
1 GACCGAAGGGAGAGGAGCGAAGCACTC
**
466791 GACCGAAGGGAGAGGTA-CGAAGGGCTC
1 GACCGAAGGGAGAGG-AGCGAAGCACTC
* * *
466818 GACCTAAAGGGAGAGGGGCAAAGTCACTC
1 GACC-GAAGGGAGAGGAGCGAAG-CACTC
* *
466847 GACTGAAAGGAGAGG
1 GACCGAAGGGAGAGG
466862 TATTGTATAT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
27 27 0.47
28 24 0.42
29 6 0.11
ACGTcount: A:0.34, C:0.18, G:0.41, T:0.07
Consensus pattern (27 bp):
GACCGAAGGGAGAGGAGCGAAGCACTC
Left flanking sequence: Indices 466264 -- 466763
AGGTTTTTCATCTCTATGGGATTCAATCCCGAGTTATTTTGAAGTCAAAAAAGAAAGGATGAGAT
TATGGAAGTCAATATTCTCGCATTTATTGCTACTGCATTGTTTATTCTAGTTCCTACCGCCTTTT
TACTGAGAATTTACGTAAAAACAGTAAGTCAAAGCGATTAATTGGAATTTCTTATCTTATACAAA
TAAAAAAGATTCCAATTCCGTGTCTTAAAATGAAATGAACGACCTAGAATTCACATTATACCGTT
AGTATGGTAGAAATAAATATTCTATATACTTCTTTCTACTATCTAGATATTGTGATTGTAATGGA
TTCAAGTTGTACCTTATTCTATAAGGATATAACAGGCTGAATTGAATATAGAGAAGCCTACAACT
ACAATAGGTATCCTGATATTCATATATGTAACGTGCATACCGCCCGAATTCCATTTCAAAGTCAA
AGGGAAGGGGGCCTGCTCGCCCGAAGGGAAGAGGTACCAAGTGTT
Right flanking sequence: Indices 466862 -- 467361
TATTGTATATTGAACCCTTTGGTTTCAGAATTCCTTCATGTTCCAAGAAATATGTTACCTTTGGG
ATACTACTCCTAAAAATGTCCCATTTGCAACGAAAAATGACGCGTTTTAGCAACTCATTTCTTAC
GTTTTCCAAATGACATAATATACGATATTAAGAAGAAAACCTCTCGAAAAGTCTCCCAATTTCGC
ACTTTTAGGAAGGAAACGCTTACTTTTGCTCCATGGTAGACGCAAGTTTTTTATGGATAATCCCA
TTTCTTTCCAGAATTGAATATGGGTATAGCTCATAAATGATATAGTTTCTACTTTCCAGGCCCGA
AGGACTCGACCAAAGGGAAGAGGCCCGAAAGGTTAAGACTTTTAAGGAAGAGGTTATTTCTCGAC
TAAAAAGAAGAGGGTTTTATCACTCGAGTGAAGGTAAGAGGTTGTCTCTGCTAGCTCAAGGTAGG
TCAAGCAAAGGATCCATATTCTAAATTCTAGATTCTAAATTCTAG
Found at i:467346 original size:7 final size:7
Alignment explanation
Indices: 467334--467379 Score: 65
Period size: 7 Copynumber: 6.6 Consensus size: 7
467324 AAGGATCCAT
467334 ATTCTAA
1 ATTCTAA
*
467341 ATTCTAG
1 ATTCTAA
467348 ATTCTAA
1 ATTCTAA
*
467355 ATTCTAG
1 ATTCTAA
467362 ATTCTAA
1 ATTCTAA
*
467369 ATTCTAG
1 ATTCTAA
467376 ATTC
1 ATTC
467380 CATATCCGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (7 bp):
ATTCTAA
Left flanking sequence: Indices 466834 -- 467333
GGCAAAGTCACTCGACTGAAAGGAGAGGTATTGTATATTGAACCCTTTGGTTTCAGAATTCCTTC
ATGTTCCAAGAAATATGTTACCTTTGGGATACTACTCCTAAAAATGTCCCATTTGCAACGAAAAA
TGACGCGTTTTAGCAACTCATTTCTTACGTTTTCCAAATGACATAATATACGATATTAAGAAGAA
AACCTCTCGAAAAGTCTCCCAATTTCGCACTTTTAGGAAGGAAACGCTTACTTTTGCTCCATGGT
AGACGCAAGTTTTTTATGGATAATCCCATTTCTTTCCAGAATTGAATATGGGTATAGCTCATAAA
TGATATAGTTTCTACTTTCCAGGCCCGAAGGACTCGACCAAAGGGAAGAGGCCCGAAAGGTTAAG
ACTTTTAAGGAAGAGGTTATTTCTCGACTAAAAAGAAGAGGGTTTTATCACTCGAGTGAAGGTAA
GAGGTTGTCTCTGCTAGCTCAAGGTAGGTCAAGCAAAGGATCCAT
Right flanking sequence: Indices 467380 -- 467879
CATATCCGGTATTCGGTATTCGATATTCGATATTTCAATATTCGATATTTCCATATTCTATTTCG
ATTGGATCACTTGAAAAATTAGGATAGGGAAAAGAGAGAGTTTTCCGGACGGTTTGACTACCGAG
TTATTATACCCGAGCTAGGTAAGAATCCTAGGTGACTTCTGTTTCCTAGTAATGTAATATCTCCA
AATAATAGTTCCTAATTCGAATTCCCGAGAGGAAGAGGAAGGGGAAGAAGAAGATGAGCAAAGCG
CTCGACTTGCCAGGCAGAGGAGTCTTTTTGAAGTTTAAGAAGAATTCGAATTCCAAGAGGAAGAG
GAATCTTAAACGGAGTCCTTTTATAAAGTTTAAGAAGAATTCGAATTCCAGAAGGAAGAGGAAGA
GGGACAAAGGAACGAGACCGTAGGGAGAGGGATTTATTGTTGACCTGCCGGGAAGAGGGACAAAG
GAACGAGACCGTAGGGAGAGGGACAAAGTCACGAGACCATAGGGA
Found at i:467353 original size:14 final size:14
Alignment explanation
Indices: 467334--467379 Score: 92
Period size: 14 Copynumber: 3.3 Consensus size: 14
467324 AAGGATCCAT
467334 ATTCTAAATTCTAG
1 ATTCTAAATTCTAG
467348 ATTCTAAATTCTAG
1 ATTCTAAATTCTAG
467362 ATTCTAAATTCTAG
1 ATTCTAAATTCTAG
467376 ATTC
1 ATTC
467380 CATATCCGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (14 bp):
ATTCTAAATTCTAG
Left flanking sequence: Indices 466834 -- 467333
GGCAAAGTCACTCGACTGAAAGGAGAGGTATTGTATATTGAACCCTTTGGTTTCAGAATTCCTTC
ATGTTCCAAGAAATATGTTACCTTTGGGATACTACTCCTAAAAATGTCCCATTTGCAACGAAAAA
TGACGCGTTTTAGCAACTCATTTCTTACGTTTTCCAAATGACATAATATACGATATTAAGAAGAA
AACCTCTCGAAAAGTCTCCCAATTTCGCACTTTTAGGAAGGAAACGCTTACTTTTGCTCCATGGT
AGACGCAAGTTTTTTATGGATAATCCCATTTCTTTCCAGAATTGAATATGGGTATAGCTCATAAA
TGATATAGTTTCTACTTTCCAGGCCCGAAGGACTCGACCAAAGGGAAGAGGCCCGAAAGGTTAAG
ACTTTTAAGGAAGAGGTTATTTCTCGACTAAAAAGAAGAGGGTTTTATCACTCGAGTGAAGGTAA
GAGGTTGTCTCTGCTAGCTCAAGGTAGGTCAAGCAAAGGATCCAT
Right flanking sequence: Indices 467380 -- 467879
CATATCCGGTATTCGGTATTCGATATTCGATATTTCAATATTCGATATTTCCATATTCTATTTCG
ATTGGATCACTTGAAAAATTAGGATAGGGAAAAGAGAGAGTTTTCCGGACGGTTTGACTACCGAG
TTATTATACCCGAGCTAGGTAAGAATCCTAGGTGACTTCTGTTTCCTAGTAATGTAATATCTCCA
AATAATAGTTCCTAATTCGAATTCCCGAGAGGAAGAGGAAGGGGAAGAAGAAGATGAGCAAAGCG
CTCGACTTGCCAGGCAGAGGAGTCTTTTTGAAGTTTAAGAAGAATTCGAATTCCAAGAGGAAGAG
GAATCTTAAACGGAGTCCTTTTATAAAGTTTAAGAAGAATTCGAATTCCAGAAGGAAGAGGAAGA
GGGACAAAGGAACGAGACCGTAGGGAGAGGGATTTATTGTTGACCTGCCGGGAAGAGGGACAAAG
GAACGAGACCGTAGGGAGAGGGACAAAGTCACGAGACCATAGGGA
Found at i:467396 original size:7 final size:7
Alignment explanation
Indices: 467389--467446 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
467379 CCATATCCGG
*
467389 TATTCGG
1 TATTCGA
467396 TATTCGA
1 TATTCGA
467403 TATTCGA
1 TATTCGA
*
467410 TATTTCAA
1 TA-TTCGA
467418 TATTCGA
1 TATTCGA
*
467425 TATTTCCA
1 TA-TTCGA
*
467433 TATTCTA
1 TATTCGA
467440 T-TTCGA
1 TATTCGA
467446 T
1 T
467447 TGGATCACTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
6 5 0.12
7 26 0.60
8 12 0.28
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.48
Consensus pattern (7 bp):
TATTCGA
Left flanking sequence: Indices 466889 -- 467388
GAATTCCTTCATGTTCCAAGAAATATGTTACCTTTGGGATACTACTCCTAAAAATGTCCCATTTG
CAACGAAAAATGACGCGTTTTAGCAACTCATTTCTTACGTTTTCCAAATGACATAATATACGATA
TTAAGAAGAAAACCTCTCGAAAAGTCTCCCAATTTCGCACTTTTAGGAAGGAAACGCTTACTTTT
GCTCCATGGTAGACGCAAGTTTTTTATGGATAATCCCATTTCTTTCCAGAATTGAATATGGGTAT
AGCTCATAAATGATATAGTTTCTACTTTCCAGGCCCGAAGGACTCGACCAAAGGGAAGAGGCCCG
AAAGGTTAAGACTTTTAAGGAAGAGGTTATTTCTCGACTAAAAAGAAGAGGGTTTTATCACTCGA
GTGAAGGTAAGAGGTTGTCTCTGCTAGCTCAAGGTAGGTCAAGCAAAGGATCCATATTCTAAATT
CTAGATTCTAAATTCTAGATTCTAAATTCTAGATTCCATATCCGG
Right flanking sequence: Indices 467447 -- 467946
TGGATCACTTGAAAAATTAGGATAGGGAAAAGAGAGAGTTTTCCGGACGGTTTGACTACCGAGTT
ATTATACCCGAGCTAGGTAAGAATCCTAGGTGACTTCTGTTTCCTAGTAATGTAATATCTCCAAA
TAATAGTTCCTAATTCGAATTCCCGAGAGGAAGAGGAAGGGGAAGAAGAAGATGAGCAAAGCGCT
CGACTTGCCAGGCAGAGGAGTCTTTTTGAAGTTTAAGAAGAATTCGAATTCCAAGAGGAAGAGGA
ATCTTAAACGGAGTCCTTTTATAAAGTTTAAGAAGAATTCGAATTCCAGAAGGAAGAGGAAGAGG
GACAAAGGAACGAGACCGTAGGGAGAGGGATTTATTGTTGACCTGCCGGGAAGAGGGACAAAGGA
ACGAGACCGTAGGGAGAGGGACAAAGTCACGAGACCATAGGGAGAGGAATCTTTAACTCGGTGAA
GAATAAGAATAATTCCAATTCCAAGAGGAAGAGGACGAGGAGGTC
Found at i:467422 original size:15 final size:15
Alignment explanation
Indices: 467389--467437 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
467379 CCATATCCGG
* *
467389 TATTCGGTA-TTCGA
1 TATTCGATATTTCAA
467403 TATTCGATATTTCAA
1 TATTCGATATTTCAA
*
467418 TATTCGATATTTCCA
1 TATTCGATATTTCAA
467433 TATTC
1 TATTC
467438 TATTTCGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.47
Consensus pattern (15 bp):
TATTCGATATTTCAA
Left flanking sequence: Indices 466889 -- 467388
GAATTCCTTCATGTTCCAAGAAATATGTTACCTTTGGGATACTACTCCTAAAAATGTCCCATTTG
CAACGAAAAATGACGCGTTTTAGCAACTCATTTCTTACGTTTTCCAAATGACATAATATACGATA
TTAAGAAGAAAACCTCTCGAAAAGTCTCCCAATTTCGCACTTTTAGGAAGGAAACGCTTACTTTT
GCTCCATGGTAGACGCAAGTTTTTTATGGATAATCCCATTTCTTTCCAGAATTGAATATGGGTAT
AGCTCATAAATGATATAGTTTCTACTTTCCAGGCCCGAAGGACTCGACCAAAGGGAAGAGGCCCG
AAAGGTTAAGACTTTTAAGGAAGAGGTTATTTCTCGACTAAAAAGAAGAGGGTTTTATCACTCGA
GTGAAGGTAAGAGGTTGTCTCTGCTAGCTCAAGGTAGGTCAAGCAAAGGATCCATATTCTAAATT
CTAGATTCTAAATTCTAGATTCTAAATTCTAGATTCCATATCCGG
Right flanking sequence: Indices 467438 -- 467937
TATTTCGATTGGATCACTTGAAAAATTAGGATAGGGAAAAGAGAGAGTTTTCCGGACGGTTTGAC
TACCGAGTTATTATACCCGAGCTAGGTAAGAATCCTAGGTGACTTCTGTTTCCTAGTAATGTAAT
ATCTCCAAATAATAGTTCCTAATTCGAATTCCCGAGAGGAAGAGGAAGGGGAAGAAGAAGATGAG
CAAAGCGCTCGACTTGCCAGGCAGAGGAGTCTTTTTGAAGTTTAAGAAGAATTCGAATTCCAAGA
GGAAGAGGAATCTTAAACGGAGTCCTTTTATAAAGTTTAAGAAGAATTCGAATTCCAGAAGGAAG
AGGAAGAGGGACAAAGGAACGAGACCGTAGGGAGAGGGATTTATTGTTGACCTGCCGGGAAGAGG
GACAAAGGAACGAGACCGTAGGGAGAGGGACAAAGTCACGAGACCATAGGGAGAGGAATCTTTAA
CTCGGTGAAGAATAAGAATAATTCCAATTCCAAGAGGAAGAGGAC
Found at i:467854 original size:28 final size:28
Alignment explanation
Indices: 467823--467883 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
467813 CCTGCCGGGA
*
467823 AGAGGGACAAAGGAACGAGACCGTAGGG
1 AGAGGGACAAAGGAACGAGACCATAGGG
**
467851 AGAGGGACAAAGTCACGAGACCATAGGG
1 AGAGGGACAAAGGAACGAGACCATAGGG
467879 AGAGG
1 AGAGG
467884 AATCTTTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.39, C:0.15, G:0.41, T:0.05
Consensus pattern (28 bp):
AGAGGGACAAAGGAACGAGACCATAGGG
Left flanking sequence: Indices 467323 -- 467822
AAAGGATCCATATTCTAAATTCTAGATTCTAAATTCTAGATTCTAAATTCTAGATTCCATATCCG
GTATTCGGTATTCGATATTCGATATTTCAATATTCGATATTTCCATATTCTATTTCGATTGGATC
ACTTGAAAAATTAGGATAGGGAAAAGAGAGAGTTTTCCGGACGGTTTGACTACCGAGTTATTATA
CCCGAGCTAGGTAAGAATCCTAGGTGACTTCTGTTTCCTAGTAATGTAATATCTCCAAATAATAG
TTCCTAATTCGAATTCCCGAGAGGAAGAGGAAGGGGAAGAAGAAGATGAGCAAAGCGCTCGACTT
GCCAGGCAGAGGAGTCTTTTTGAAGTTTAAGAAGAATTCGAATTCCAAGAGGAAGAGGAATCTTA
AACGGAGTCCTTTTATAAAGTTTAAGAAGAATTCGAATTCCAGAAGGAAGAGGAAGAGGGACAAA
GGAACGAGACCGTAGGGAGAGGGATTTATTGTTGACCTGCCGGGA
Right flanking sequence: Indices 467884 -- 468383
AATCTTTAACTCGGTGAAGAATAAGAATAATTCCAATTCCAAGAGGAAGAGGACGAGGAGGTCTT
CGAGCCTTAGATTAGATAATGGACAAGTTCCATATGGTTAACCCGAAAACCTTTTAGGTACTCCG
GGAATTAGCCCCAGGCATTGCGTCCTGATGAAAAAAGGGTATAAACCCAACTAACTAACTGAGGA
CGTGGCTAAAATAATGCCACTCCCAAACAAAAGAAAGGTCCGCCCGAAACTCTTCCAGTTAGGGT
CTAAAATGGAACCGCCCAGGTGCTTGGGTACTTAAGTAACGCGGTGCAAGAGTGTTTTTGTCGAA
AGTAACTCAGTGTTTCTATTTGTGGCGGATAAAGTATAGGGTACCTAAACTGATAGGGGTACTGG
TTCGCCCGAAACTCTTCTAGTTTGGGTAGTCAAATGAACCACCCAGGTGCTGCCTGGTAAAAATG
AACTTGGTGTTTCTGTGGCGGATAAAGTAACAAAGTGCCTAAACT
Found at i:473621 original size:24 final size:24
Alignment explanation
Indices: 473589--473642 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
473579 GCTTCTGATA
473589 TAGGAGTTGGAGCAGGAACACGAG
1 TAGGAGTTGGAGCAGGAACACGAG
473613 TAGGAGTTGGAGCAGGAACACGAG
1 TAGGAGTTGGAGCAGGAACACGAG
473637 TAGGAG
1 TAGGAG
473643 CTCTTGTTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.43, T:0.13
Consensus pattern (24 bp):
TAGGAGTTGGAGCAGGAACACGAG
Left flanking sequence: Indices 473089 -- 473588
TATTCCTCAGTTTAAGCTCGCGATGGGAATAAGAAAGGCGCGGTAGCTGGCTTTCTTGGGATTGC
TCGCTGGCTTACTATGACGATTGCCCTCACTCGAAAGCCGCTTCCAAAAATTCCAATAAGATTGT
TTTCAACATTCCCCCCCATTAGAGTTGGGCTTATGGTTGAGCCTCTTATTGCGTAGTCCGCTTTT
CTTTTTAAGAAAGCAAAGAGGCGAGCTTTAAGACGTTCTTTGATCCTTGTTGTACATTCGGGTTG
GACTCCAGTCCTCGTCCTCCCTTGCCTGCCAGCACACCTGAAGGAAAGGAAACCGGTATAACACA
AACAAAGGAACAGCAATCACCACAAGCAATCAACGATTCAAAATGACAAAAGAACGGGGTAGAGG
CGGAGTCTTGGCTGTAGTTAATGGGAGGACTAAGAGTAGCAGTAGGAATAATAAAAGGAGAGCAG
TAGAGAATAGAAAGCGTCTTGTCAGAGCATATGTAGCTTCTGATA
Right flanking sequence: Indices 473643 -- 474142
CTCTTGTTCGTTCGCTTGTTAGCTAGTCTTTCCTCGCAAGCCACCAAGCCTTATCTTCGTCTCTG
AACTCAAGCCTTCCCTTCGATCGAGTTATCCATTTTTTTCATTTTATGATTGCCAAGGTATAGGC
GAATAAAAGATAACGATTTTCGAAGACACTGTGCCCGAATCAAGGAAAGCAACTGTGCCTGAGAA
GAAAGAAAGAGATATTTCTTTTCTTTTGAACAGCCTTTAAGAGATAGGGGGTGCCACAAGCCTAG
GTCCCCCGACAGAGAGTATGGATCACTATGTCTCAAAAATGCGTCTTGCTTAGGTTGAAGCAAAT
GCCAGTATAGTTGCTGTTCTTATGCCGCTATTAGTAGATCAAACGCTCTTCTTTCTCTGATCTTT
CGGAGTAGATCTTTCCTTAGTCGAGTCAGATCTGCACCGCAGGTTAATCTCTCGTTTTTTGGAGC
TTTACTTTACTAATAAGGGGTCGCTGCCCCTATATGCTTCAAGCT
Found at i:478648 original size:16 final size:16
Alignment explanation
Indices: 478623--478663 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
478613 ACCTCTTGTT
*
478623 TTGTTCCTTATTGCTA
1 TTGTTGCTTATTGCTA
478639 TTGTTGCTTATTGCTA
1 TTGTTGCTTATTGCTA
478655 TTGTTGCTT
1 TTGTTGCTT
478664 GTCTGAGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.10, C:0.15, G:0.17, T:0.59
Consensus pattern (16 bp):
TTGTTGCTTATTGCTA
Left flanking sequence: Indices 478123 -- 478622
TTTTGCTTATAGGAATTTGAAATAGCCCCAATCTCATAAGCCCGTCGATCCCCTCAGTAATGTAA
TCCTTTTAAAGCTTATGTTATTCTGTCCACTTTGCTTTCAAGGCACAGTCGAATATAGCGACTCT
GTGAACTAGAGAGGGCGTGCATTCTCTTTTTACCGGCTCGGAAAAGTGCCGTGCCAGCCCGGCCC
GCAAGAATCCCTTTCCGCTATGCTCTTGTAGCTAAGGGTATTCCTCCAATCGCTTCTTTCTCTCA
AACCTCTCCTGTACCTCTTCATTGCATTCGAGAAATCAATACCAGCAGTCTATCAACTACTGTCA
CTTCGTACCTCTTCACTGCGTTCGAGCGAGTTCCTCCTGTAAGTCAAGTCATAAATACCTCTTCT
AATAACTCGAGAACTGCTCACCTCTTTCAGAGCGATAAGAAGAACTTTGATGAGCCAATCGCTTC
GCTCTTTCCTCTGCGCTTCACTTGAGATATGAATAACCTCTTGTT
Right flanking sequence: Indices 478664 -- 479163
GTCTGAGGATAGAATCTATAGCTCTTATTGGGCTCTGTCTTCTTGTTTTAGGGTTAGAATGCCGT
TCCTTGTGTTCTCTTCTTGGATGGGATAGAGTATGCTCGCTCTTCCTTGTAGCTAATGCTGCTAG
TTGTTTCGGTATTCGGATTGAAAGAGAGGGACAGAGTAGCTTACAGCAAAGCTTATGGGACGTAG
TAGCTGGAGAGGTGAATCCAGAGCTCGAATAGGAAAGCAGGTTACTCGAGCTATAAAGCGAAGAG
GTTCTTTTTGTTCCTTGTGTTTTCATAGGTCACTAACAAAGGGGAGCTAATAGGAAACTACCAGT
GCGGTTAGCCCTTTTTTGTTTTCTAGTTCCTTTAGCACCCGGGGCTTTAGGGCATGGATTGCTTA
TATGGCTCGAATGTCTTACTGTTGTGAGCATAGCTTTTGTAGCTAGTCCTACTTTGTAGCTAGAA
AAACCCGGTTGTTAATAGCTAGTCGGGAGCAGTTTTGTTCCTTGT
Found at i:483673 original size:19 final size:19
Alignment explanation
Indices: 483649--483688 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
483639 CCAATAAATG
483649 ACTTATGCAATGGACTGAT
1 ACTTATGCAATGGACTGAT
483668 ACTTATGCAATGGACTGAT
1 ACTTATGCAATGGACTGAT
483687 AC
1 AC
483689 AGGATAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (19 bp):
ACTTATGCAATGGACTGAT
Left flanking sequence: Indices 483149 -- 483648
TTAAAGAGAAGGAGGTTTGGCATTCAATCAGAATAAGGTTAATGAATTGCCTGAAGCAATATCCT
GATTAGGCACCTACCTCTTAAGGAAGTTAGTGAGTGAGCTAGTAGTCGTAGGGCATGGGCGGGAT
AAGAAGAAGTTAGGGAGACGTAGCTCAGTTCAGTACTGCTTTACTAAAGCTTTTTCCCGTTAGAA
ATTTGTTACAGAGACAGTGGCTGGATCATACCAGCAGCATAGCATAGATCTCAATCGTTGAGAAG
ACCCCGCAATCCCACCGGCGCGGGAGACAGGGATAAAGATCAACATGTTTGGTGCCTATAGCGAA
ACCTATATTATAGAAAAGGTGGGTGGATGAACAAATTGCTTTCTCTGCTCCAGTTCTCTGCCACT
GGTATTTATCCTGCAAATCTTCCTGCTAAGATCGGAGCTCTCACCGCATTCCCATACTGTTTAGA
TTGGAGAGCTGCAATCTTCTTATCCTCCAAGTCATCCAATAAATG
Right flanking sequence: Indices 483689 -- 484188
AGGATAAGGACGGCATCGGTAACCATATTCGAAAGCTTTGGAGCTTAGGCAAGCAGTAGTTGGAG
GGTCTCAACCATGTATCCTTTTCCTCTTTGAAAAAGGCAGCACAACGGCCCGATCCGAAAGCTTA
CCATCCCGGGCATACCATCCACAGAGGTCAATATTCATCTTGAACTTCTTGCCAGAATGTACCTA
AATCAGTAGTGATTTCGATCTCTTAAGGTAGGATACTTAGGTCGATGTCGTAGCATATAGGGCGT
ATAGCAGCTTCGATCTTATCCCAGCTCTTTCAGACTTCTATTGCAAAGATGATTTCCGACCATCA
GATTGAAAGACGGAAATTGAGACCGTCCATTGAATGAAGTCAAAGATGTCTCTTTCTTGCGTGAT
AGGAACATAGCTTCGGAAAGCAGCTTAGCCAAGTCTGCCAATCGATCTGCACACCGGTGACCTTC
TCTACATATATGTCTGATATCGATATCCACGAGACAACAAAATGG
Found at i:484763 original size:13 final size:13
Alignment explanation
Indices: 484745--484770 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
484735 ATGAATAACT
484745 GGAGTGAGTAGAC
1 GGAGTGAGTAGAC
484758 GGAGTGAGTAGAC
1 GGAGTGAGTAGAC
484771 TTCTATCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.46, T:0.15
Consensus pattern (13 bp):
GGAGTGAGTAGAC
Left flanking sequence: Indices 484245 -- 484744
TCTCCTTAAGAACTGGACTACCACTTCTAACTCGATAATCAGACGACCTCAGTTGGTATTCTAGT
GGGCTTTTGATTTGAATTCGAAAGATCAGGTGCGGGGTAGGCTATGGGCTTTGCTTTACTAATTG
ATTGATTGAAGTATGTTTCCTTTTCCCGTAAAGTAAGCCGAATCCTCAGTGGGGTATAGCTCTAG
TGGAGCAGGAACTCTTAGTCCCATTGCTATAGAATAGGGGAAGTTTCTATTTTGGGAAACATCAA
CGAATTGTTGTTCAAGTGTCTTGTGAAGCTTCTTCCTCAGCTTGGTGTTCCAGTAGTTCTTCACA
TCATTGTCAGTTATTCCCGGAAGCGCAATCAGACCCACCTGCTGCCAATAGCTTGGTGAAGGCTG
ATGATGAAAGGCAAGAAACCTGACAGTAGGTGAGCCTTCCCCATCCCACTTGTTGTGTTGTGCGA
AAGCCCCATCAGCAAGACGAACCGGCTTAAAGATGATGAATAACT
Right flanking sequence: Indices 484771 -- 485270
TTCTATCTATGCTTTCTCTATCTAGTGAAGACAGACAATTTGTAGTAAGGTTAGATATCGAAATG
TTGATTGTTGGGTGCCTGCAAATGAAGTGGATGCTTTCACTACTTTCACTAAATAATAGCATAGT
CTGTGGGCAAAATGACAAAGTCTAATTGCATCAATAATTTGCAAGTGTGTGTAGCAATATTGTTT
TCTATATCCTGTATATTATCCTGTCTTCAACCCCTTCATTTGATTCTCTCAACTATAGTGGCAGT
GCATATAGAATATACTTATATAGGATAGGATCTCAAGTTGTGGAGCCTGAATTTCGCAAGTTTGA
AAGTTGCCTTAAAGTAAAGCCCGGTTATTATACCGCCCCAGTTGCTTGCTGGATAAACCTCCAGG
GACATGTGATAGAGTTATTATTGGTTGTGCTTTGTCAACAGTTTGACTATATATACTTGGATGAC
TTTTATCAGGTGGTAGGATACGGCCTCTTTGGGGTTCCTTATTCA
Found at i:485365 original size:17 final size:17
Alignment explanation
Indices: 485343--485376 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
485333 GCAGAAATAG
485343 AATTATTTCCCATCATC
1 AATTATTTCCCATCATC
485360 AATTATTTCCCATCATC
1 AATTATTTCCCATCATC
485377 CTTGAAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (17 bp):
AATTATTTCCCATCATC
Left flanking sequence: Indices 484843 -- 485342
TTGGGTGCCTGCAAATGAAGTGGATGCTTTCACTACTTTCACTAAATAATAGCATAGTCTGTGGG
CAAAATGACAAAGTCTAATTGCATCAATAATTTGCAAGTGTGTGTAGCAATATTGTTTTCTATAT
CCTGTATATTATCCTGTCTTCAACCCCTTCATTTGATTCTCTCAACTATAGTGGCAGTGCATATA
GAATATACTTATATAGGATAGGATCTCAAGTTGTGGAGCCTGAATTTCGCAAGTTTGAAAGTTGC
CTTAAAGTAAAGCCCGGTTATTATACCGCCCCAGTTGCTTGCTGGATAAACCTCCAGGGACATGT
GATAGAGTTATTATTGGTTGTGCTTTGTCAACAGTTTGACTATATATACTTGGATGACTTTTATC
AGGTGGTAGGATACGGCCTCTTTGGGGTTCCTTATTCATCTTTTTTTCTTTCAACTCTATTTATA
TGCTGCCTAAAAAGAATGCGGCTTATATTGACATAGCAGAAATAG
Right flanking sequence: Indices 485377 -- 485876
CTTGAAATGGCTTGAAATGGAATGTTTCCTTGGTCTTCAATATTACCTCTTTGTCATTCAAATGC
CAGCTAGTAGTTAATAAATGACTCAATATATTTGCAATGTGCTCATTTTCATTTACTGGCTGTTG
ATGCAGGTCCGGTCTGCTACCCTAGACACATGGCTTCCAGAGCAGGTTGCCTTTATTCCCTTTAT
TCCTTTATTCTAAGAGTGGGGGAGTGGGTAAGCTTGCCTATTCATAAGTTTTCACTTCTTTTAAT
TGATATTCACATTCAGACTGAGAAACTATATCCTGTATATACAATACATTTGCTTTCTCTTTCTA
TACAGCAATCAATGGGCAATGAGAAAATAGTTACTTTACTGGTAAGCAGAACTGCCGGGGGAAGA
ATATTTTCCAATCGTCTAAATATCGAGCTACTCGAAAGATCAGATGGTGCAACTAGCCGCCTTAT
GAAGAAGGATTGACCTAGCTCAGGAAAATGAAGAGGACAATTCCA
Found at i:486064 original size:15 final size:15
Alignment explanation
Indices: 486044--486075 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
486034 ATTGGAAGGG
486044 TACCTATCTTATCAC
1 TACCTATCTTATCAC
486059 TACCTATCTTATCAC
1 TACCTATCTTATCAC
486074 TA
1 TA
486076 AAATAAAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (15 bp):
TACCTATCTTATCAC
Left flanking sequence: Indices 485544 -- 486043
CAGAGCAGGTTGCCTTTATTCCCTTTATTCCTTTATTCTAAGAGTGGGGGAGTGGGTAAGCTTGC
CTATTCATAAGTTTTCACTTCTTTTAATTGATATTCACATTCAGACTGAGAAACTATATCCTGTA
TATACAATACATTTGCTTTCTCTTTCTATACAGCAATCAATGGGCAATGAGAAAATAGTTACTTT
ACTGGTAAGCAGAACTGCCGGGGGAAGAATATTTTCCAATCGTCTAAATATCGAGCTACTCGAAA
GATCAGATGGTGCAACTAGCCGCCTTATGAAGAAGGATTGACCTAGCTCAGGAAAATGAAGAGGA
CAATTCCAACTAGGCCAGCAGTTACTAGTCCGGTTGATGGCGTAGGAAAACAAGAAACAAGAGCT
ACCTAGAAAAAGCGGATGCTGACTTTAGCTCAGCTTCGTTTAGGCCCAACCCAAACATAATAATG
GGAATGGGGAAGAGAATTGTCATATCTAATGATCGATTGGAAGGG
Right flanking sequence: Indices 486076 -- 486575
AAATAAAAGCATTCTTTCTCTTGCGCCGGTAGATTGACTGAAAATACGGAATACTCCTTACCTTA
GCTTAGATGGGAGATATATTATATACTATATAGGAAGAACATCTCTGACTAGATTGATTTTGCTA
ATGGAACAGGAACAAAAGAAAAGCGAGGAAGTGAGAACGGAAAAGGCTATTTAGCGTTTAGATGC
TTTTTTTCAACATAGGAAAGGAGTAGGAGTGAAAGCAGCGAGACTTCTGAAACGAGTATTTCATT
CTTTATTGTTTACTTTACCAGCGTAGAAGTGAAGTTTCCATGTTCTCGGAAAGTTCCGGAATGAC
TTTTAGGAGAAGTATGGAAGATCGATCAAACCCGCGACTAAGTATTCAGTATTCCATAGCCCTCG
TTGAGAGGACTCCAGGCCCCCCAACCATTTACTAAAGTGAAAGAGATCGGACTGGCTTCAAGAAA
ACCATAGGCACGATTCTGAATTGCACGAGGTCCAACTCTTTGCCA
Found at i:489531 original size:17 final size:17
Alignment explanation
Indices: 489498--489531 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
489488 ATATTATATG
* *
489498 GCGAAATCCACTTTCGT
1 GCGAAATCAACTCTCGT
489515 GCGAAATCAACTCTCGT
1 GCGAAATCAACTCTCGT
489532 CTTTTCTCGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (17 bp):
GCGAAATCAACTCTCGT
Left flanking sequence: Indices 488998 -- 489497
AAAAAGAGAGACTTGTTCTTGCTCACTCCAATCACCGGTTGGGTTGGTCCAAGCAAGCGCCAGAA
AGACATGGGATGAAAAGACGAGCAAAAGACTGATATCGTTGTGATTTCATTCCATAGTTTCTCAA
CTCAGATATTCCATAACCTTGAGCTACAACAACTGGCTTAGAAATAAGTCAACTACCATTTGCTT
AACACTCGACTCTTTCAAGAGCTAATTACCTTCGGAATCAAAGCTCAACAAGCAGACATCAATAA
AGCAATCAAGAAAATGAGACCCGGATCAGTACAGCTACAAGAGCTGCATTCTCATTATACGCATT
GCAAAACAATCAACTAGCTACATTTTCAAGAGTCACTCCTTTGTCTGAATTACACAGAGCAAGTG
ACTGTCAGCGAACAAGCTTACCAAGAAGAAAGAAGGTACGGAGTCAACATGATTGGCTCTGGATG
TGACTTCGTTTCTCATTCTGTCAATGAAATCTATGATATTATATG
Right flanking sequence: Indices 489532 -- 490031
CTTTTCTCGTAGATAGAGAAGTCTTCATTGAAGTATGCCAAGTAATCTGTCTAGCTGTCTTTCTT
GTTCGATGGAGAAAAGCTAGTGACCCAGGCTGTATAGCGGTTATCACTTCAGCCTAAGATCGTAC
AAGAATGCATTGGATGGATGACCGGGATAAGAAATAGGACTCTCACAGGGGGAAGGTGCGGTAGC
GGCGCGGGAATGAAAGAAGTTTCTCATTCTTTCCATTCAATCGCTTCTATTCTATAGCGAATCAG
GCTGACCTGCAGAGCGCGTATTGCGGTGGGTCAACTCTCGTCTTTTCTCGTAGATAGTTTTTGAA
CCTTTTCCTTGATAAGATGTTGATAGATTCAGGGGGCGCAGAATGAGTCGGTTGCTAAACGAAAC
GATTGGGACGAAGGCAGCGAGGTAGGAGCTGGGAAGAATACGAAGGAGTACGCTTGGTTCACGAG
GTTCTACCACGTAATCCAAATGTTAGGCCAAAAGAAGAGTTTGAT
Found at i:493687 original size:55 final size:54
Alignment explanation
Indices: 493601--493725 Score: 196
Period size: 55 Copynumber: 2.3 Consensus size: 54
493591 AAACATTTTC
* * *
493601 GAAGAGGTAATTTATTGTTGACTGAAAGAAGAGGCACGAAGCCCTCGATTATAAA
1 GAAGAGGTAATTTATTGTTGACTGAAAGAAGAGGCACGAAGCACTCGACT-GAAA
* *
493656 GGAGAGGTAATTTATTGTTGACTGAAAGAAGAGGCACGAAGGACTCGACTGAAA
1 GAAGAGGTAATTTATTGTTGACTGAAAGAAGAGGCACGAAGCACTCGACTGAAA
493710 GAAGAGGTAATTTATT
1 GAAGAGGTAATTTATT
493726 TCTCGAATAA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
54 18 0.28
55 46 0.72
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.24
Consensus pattern (54 bp):
GAAGAGGTAATTTATTGTTGACTGAAAGAAGAGGCACGAAGCACTCGACTGAAA
Left flanking sequence: Indices 493101 -- 493600
TATCCTATCAGTCCTAATAGGAAGAAAAGTCCCAGCCAACTGTACATGTAGGACTCAACTGCACT
CTTTCGATTCTTTCTTGCCTCACGGGGGTTCGAACCTCAAGGAGAGGTAGGGATGCAAAATCTGT
CCACCTTCAGGAACGTAAGTAGAGTAGTTCCAGGAAATCAAGAACTCTTTAGCTTGTCGTCTAGC
AAGACGGGGATCTCCCATTAGTAACTCAACTGAAAACAAGGAATTTGAATCACTGAGTTGATAGG
AAATGCAATTGGCTCTAGTCGATAGACAAAAGGGGCGAAGTGACTGTAGTTGATGCAGGGGCGAG
GTAGGAGCTTGGAGCTTAGCCGCTAAGGGTAAGGAGAGCGGAGAAGAGAGTGGAAATGAATTCTA
GCTTCAATCTGAATGTTTCGGAAAATACTCATCAATATTACGAGACACTTTAGGGTTAGTAGTAG
CTCGAGCAAACCCTCGGACTATGAGGTAGAGCCAAAAACATTTTC
Right flanking sequence: Indices 493726 -- 494225
TCTCGAATAAAACGAAGAGGTAGAAGGAGGGTTAAGACTATAAAGGAGAGGCAGAAGGACTCGTT
GTTTGTGAGAGGTTATTTATATACTCGACTGTGCCAGGAGAGGCACGAAGGACTCGACTGTTAAG
GAGAGGTAATTTATATACTCGACTATAAAGGAGAGGTAATTTATATACTCGACTATAAAGGAGAG
GCACGAAGGTGCTCGAATAAAACCGGAACCTGTAAGTCGAGGGCTTCGCCCCTCTACCTATGAGC
GGCAAGCCAATTCCATCTCGAAGAGGGCGAGAGCAAAGACCATCTACTCTATATAAGCTCTTTCC
CATCGTTTGTCAACTCAGATATTGAATAACCATCGTTTATCAACTCAGAGAATGCAACAAAGAGA
AGAAAACAAGGACTGGAACATGAAAGGCAAGCCTCTCTTTTCAGTCTCCAACGAGATCCCTCATC
CCAGTGATAGCCAGCCAATAGCTGTCAATTCCTTTCGCGGGGGTT
Found at i:493878 original size:30 final size:30
Alignment explanation
Indices: 493842--493921 Score: 142
Period size: 30 Copynumber: 2.7 Consensus size: 30
493832 GGCACGAAGG
* *
493842 ACTCGACTGTTAAGGAGAGGTAATTTATAT
1 ACTCGACTATAAAGGAGAGGTAATTTATAT
493872 ACTCGACTATAAAGGAGAGGTAATTTATAT
1 ACTCGACTATAAAGGAGAGGTAATTTATAT
493902 ACTCGACTATAAAGGAGAGG
1 ACTCGACTATAAAGGAGAGG
493922 CACGAAGGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28
Consensus pattern (30 bp):
ACTCGACTATAAAGGAGAGGTAATTTATAT
Left flanking sequence: Indices 493342 -- 493841
GAATCACTGAGTTGATAGGAAATGCAATTGGCTCTAGTCGATAGACAAAAGGGGCGAAGTGACTG
TAGTTGATGCAGGGGCGAGGTAGGAGCTTGGAGCTTAGCCGCTAAGGGTAAGGAGAGCGGAGAAG
AGAGTGGAAATGAATTCTAGCTTCAATCTGAATGTTTCGGAAAATACTCATCAATATTACGAGAC
ACTTTAGGGTTAGTAGTAGCTCGAGCAAACCCTCGGACTATGAGGTAGAGCCAAAAACATTTTCG
AAGAGGTAATTTATTGTTGACTGAAAGAAGAGGCACGAAGCCCTCGATTATAAAGGAGAGGTAAT
TTATTGTTGACTGAAAGAAGAGGCACGAAGGACTCGACTGAAAGAAGAGGTAATTTATTTCTCGA
ATAAAACGAAGAGGTAGAAGGAGGGTTAAGACTATAAAGGAGAGGCAGAAGGACTCGTTGTTTGT
GAGAGGTTATTTATATACTCGACTGTGCCAGGAGAGGCACGAAGG
Right flanking sequence: Indices 493922 -- 494421
CACGAAGGTGCTCGAATAAAACCGGAACCTGTAAGTCGAGGGCTTCGCCCCTCTACCTATGAGCG
GCAAGCCAATTCCATCTCGAAGAGGGCGAGAGCAAAGACCATCTACTCTATATAAGCTCTTTCCC
ATCGTTTGTCAACTCAGATATTGAATAACCATCGTTTATCAACTCAGAGAATGCAACAAAGAGAA
GAAAACAAGGACTGGAACATGAAAGGCAAGCCTCTCTTTTCAGTCTCCAACGAGATCCCTCATCC
CAGTGATAGCCAGCCAATAGCTGTCAATTCCTTTCGCGGGGGTTGAGTGGGACAATTAGCTACAA
AGGCAGGAACTCTCTTACAAGGACTGATCCATTGGGGTAGGTATATGAACTAGTAAGCTGTGCCC
CCATTCATTGAGCCTTCTTTCTCCAACAATCAATGCCTGCCTTGCCTCAAGCAAAACTAAGCGTA
CGATCTCTTGCTTGAGACCTCTAGCTAGACTCTATTGCATTCTTA
Found at i:493891 original size:58 final size:56
Alignment explanation
Indices: 493761--493891 Score: 165
Period size: 59 Copynumber: 2.3 Consensus size: 56
493751 GGAGGGTTAA
* * *
493761 GACTATAAAGGAGAGGCAGAAGGACTCGTTGTTTGTGAGAGGTTATTTATATACTC
1 GACTATAAAGGAGAGGCAGAAGGACTCGCTGTTAGTGAGAGGTAATTTATATACTC
* **
493817 GACTGTGCCAGGAGAGGCACGAAGGACTCGACTGTTAAG-GAGAGGTAATTTATATACTC
1 GACTAT-AAAGGAGAGGCA-GAAGGACTCG-CTGTT-AGTGAGAGGTAATTTATATACTC
493876 GACTATAAAGGAGAGG
1 GACTATAAAGGAGAGG
493892 TAATTTATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
56 5 0.08
57 10 0.16
58 18 0.29
59 28 0.45
60 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.24
Consensus pattern (56 bp):
GACTATAAAGGAGAGGCAGAAGGACTCGCTGTTAGTGAGAGGTAATTTATATACTC
Left flanking sequence: Indices 493261 -- 493760
CAGGAAATCAAGAACTCTTTAGCTTGTCGTCTAGCAAGACGGGGATCTCCCATTAGTAACTCAAC
TGAAAACAAGGAATTTGAATCACTGAGTTGATAGGAAATGCAATTGGCTCTAGTCGATAGACAAA
AGGGGCGAAGTGACTGTAGTTGATGCAGGGGCGAGGTAGGAGCTTGGAGCTTAGCCGCTAAGGGT
AAGGAGAGCGGAGAAGAGAGTGGAAATGAATTCTAGCTTCAATCTGAATGTTTCGGAAAATACTC
ATCAATATTACGAGACACTTTAGGGTTAGTAGTAGCTCGAGCAAACCCTCGGACTATGAGGTAGA
GCCAAAAACATTTTCGAAGAGGTAATTTATTGTTGACTGAAAGAAGAGGCACGAAGCCCTCGATT
ATAAAGGAGAGGTAATTTATTGTTGACTGAAAGAAGAGGCACGAAGGACTCGACTGAAAGAAGAG
GTAATTTATTTCTCGAATAAAACGAAGAGGTAGAAGGAGGGTTAA
Right flanking sequence: Indices 493892 -- 494391
TAATTTATATACTCGACTATAAAGGAGAGGCACGAAGGTGCTCGAATAAAACCGGAACCTGTAAG
TCGAGGGCTTCGCCCCTCTACCTATGAGCGGCAAGCCAATTCCATCTCGAAGAGGGCGAGAGCAA
AGACCATCTACTCTATATAAGCTCTTTCCCATCGTTTGTCAACTCAGATATTGAATAACCATCGT
TTATCAACTCAGAGAATGCAACAAAGAGAAGAAAACAAGGACTGGAACATGAAAGGCAAGCCTCT
CTTTTCAGTCTCCAACGAGATCCCTCATCCCAGTGATAGCCAGCCAATAGCTGTCAATTCCTTTC
GCGGGGGTTGAGTGGGACAATTAGCTACAAAGGCAGGAACTCTCTTACAAGGACTGATCCATTGG
GGTAGGTATATGAACTAGTAAGCTGTGCCCCCATTCATTGAGCCTTCTTTCTCCAACAATCAATG
CCTGCCTTGCCTCAAGCAAAACTAAGCGTACGATCTCTTGCTTGA
Found at i:496396 original size:30 final size:29
Alignment explanation
Indices: 496346--496425 Score: 128
Period size: 30 Copynumber: 2.8 Consensus size: 29
496336 CGTTGTTTGT
496346 GAGAGGTTATTTATTACTCGACTGAAAAG
1 GAGAGGTTATTTATTACTCGACTGAAAAG
496375 GAGAGGTTATTTATATACTCGACTGAAAAG
1 GAGAGGTTATTTAT-TACTCGACTGAAAAG
496405 GAGAGG-TATTT-TTGACTCGAC
1 GAGAGGTTATTTATT-ACTCGAC
496426 CTTTGTGAGA
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
27 1 0.02
28 8 0.16
29 19 0.39
30 21 0.43
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (29 bp):
GAGAGGTTATTTATTACTCGACTGAAAAG
Left flanking sequence: Indices 495846 -- 496345
TAGTCTGACGAAGGATGACAAATCCGTCTCCCAATATTTGCATCAAGCCAAAGCTCTTGCCGATT
CCCTTGCTCTTGCCGGTAACCCTCTTTCTTCATCCGATTTCAATGCTATTGTGTTTCGCTCGGTT
CCGACTATAATGGTATTATGGGAGCACTACAGCAGCGCACAGATCCTTAACCATTTTCCGAGCTT
CATGGACAGCTTGTTTCATATGAGATTCTTCTTGCCTCTCAGCAAGTTTCGGCCCCACTGGCCAA
CACTGTGCATACCACGGGTTCTCACTCTCAGGGCTCTTATCGTGGTCCACCCTCTGGTTATCGTG
GCCGTGGTGGTCGTGGTGGGAATCGGGGGCGTCGAGGTACCAAGTGTTGACTTGCCAGGAAGAGG
TACCAAGTTAAGACTTGCCTTGCCAGGAGAGGGAATTTATTGCTCGACTGAAAGGAGAGGAAGGA
GCGAAGCGAGTTACTTGGAGAGGTTATTTATTTCTCGTTGTTTGT
Right flanking sequence: Indices 496426 -- 496925
CTTTGTGAGAGGTCAGAAGGACTCGACTGTTAAGGAGAGGAAAGAGGGGCTCGACTGAAAGGAGA
GGTTACAACAACTCTCGGCCTGCTTGTCAAATCTGTGGTCTCAACAATCATCTTGCTTCCGCTTG
CCGCCGTCGGTTTGACTCTACTTTTCAGCCTCATTCTCAGAATTTGGGTCGAGGTAACATGGATT
TCACTGGTTCGGCTCAAGGTCATCTCTCGATTCTCCCGCCGCCATCCATTCCGGATTCTCAGGTT
TCCTCCCCTACTCAGTTTTGGTACCCTGACACTGGTGCAACTCATCATGTAACCCCTGACCTTGC
TTCCCTCAGTTTATCTACTCCTTATCGAGGTACGAATAAATTGGTTGTTGGTAATGGTACTGGTC
TTACAATTGCACATGTTGGTTCTGGTATTCTTCCTAATCCTAGCCGACCACTGAATCTGAATCAT
ATATTACATGTTCCTCATATTACAAAGCCTTTACTTTCTGTTCAG
Found at i:498729 original size:24 final size:24
Alignment explanation
Indices: 498702--498752 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
498692 GTTCTTCCTC
*
498702 CAACAACGGATATGGATATTCCAA
1 CAACAACGGATATGCATATTCCAA
*
498726 CAACAACGGATATTCATATTCCAA
1 CAACAACGGATATGCATATTCCAA
498750 CAA
1 CAA
498753 AAGGAAAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.24, G:0.12, T:0.22
Consensus pattern (24 bp):
CAACAACGGATATGCATATTCCAA
Left flanking sequence: Indices 498202 -- 498701
CACAACAAAAGATGCACCCTATTCTTGTCTTGCAAAGAAAGAGCTTAGACTACTATACTACTGCT
ACTAGCACTAGAAAGGCATAAAGCGAAGGCCGAAAAGGGCTTTTTTCTGGCTTAGAGTCACCAAG
AATCTCTCAGTCAACCAAGCCAGGAAAGGAAGAAGGTAAGGCTGATTCGAGACTAAGTGCCAGCG
GCACCGGTTACGATCACAGTAAGTAAGAGAAAAACTCATCTTTTTTATATACACGATTTTTTGCA
TTCAGTTGAATTAAGAATTCCCTCTCATCTCATCTGTCGATGAAAAAGGCATTTCTCGAGATGAA
TCCCGGCTTGAAGTCAAGTGCAAGAGTTGAAGCAGGTGGCATTCCCATTCCCCTATTTGAAAGAG
GCCTTTTCGCGCCCTGGCACGGCACAATTGTGCACAAGCTAAAGCTTCCCTTGCTTCAGGAAATT
CATTAACAGCTTATTCATTCTTCTTTCATTTCATTGTTCTTCCTC
Right flanking sequence: Indices 498753 -- 499252
AAGGAAAGCTCGGCTATCCCTATATGGATTTGGGATCATAAGTCATAAATATCGTTTCCACTTAC
AAATAGCTGCTAAAAGGAAATAGAACGAAAGGGAACTGGTTGCTCAGTCTCTTTCCTGCCTCTGT
AAAGCTAATTATCCCACCTCTTAGTTTAGTTGATATGACGGGTTATGCATATGAATAACGAACCT
TATCTTACATCAATATAGAGCATTTTCTCGAGAATATTGATAGCAAATGGGACGTTTCTCTACTA
CGTATCCCAAAGTTAACATCTTTGTTGTTACATTTAGGAATGTAGAAACCAAAGGGTTCACTATA
CAATACCTCTCCTGTAAGTCAAGTACAAAAGTACCTCTGGCAAGCGCTTCGCACCTCTAGGAGAG
AGACTCATAACCTCTCCTTATCAGTCGAGCACTTTGTGCCTTGGATTTCAGTCGAGAAAGAAATT
ACCTTTCCCATGGTTCGGTATAAACGTTCTTACTTATCACAAGTA
Found at i:500201 original size:33 final size:36
Alignment explanation
Indices: 500130--500204 Score: 111
Period size: 38 Copynumber: 2.1 Consensus size: 36
500120 ACCTCTTACT
500130 TATCACAAGCAAGTCAAATACGTTGGTAAGGAAATCTA
1 TATCACAAGCAAGTCAAATACGTT-GT-AGGAAATCTA
500168 TATCACAAGCAAGTCAAATACG-T-T-GGAAATCTA
1 TATCACAAGCAAGTCAAATACGTTGTAGGAAATCTA
500201 TATC
1 TATC
500205 TCAAAGTAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
33 13 0.35
35 1 0.03
37 1 0.03
38 22 0.59
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (36 bp):
TATCACAAGCAAGTCAAATACGTTGTAGGAAATCTA
Left flanking sequence: Indices 499630 -- 500129
TAACCTCTTACTTCGGTCGAACGTCTTACAAGTACTAAAGTACCCATAGGTCCTATACCCATGAT
TATCAAGAATAATGCGATTATGGATAAAAACTTGCATCTAGCATAGGGGCTAAAGTGACTGAAAA
GTGAGAAATCACCCGACTTGACGTGACGAGGAGTTTCTCTATTGGAAAACTATATAAATGAAATG
AGTTGCTGGAAAACTATATAAATGAAATTCGTTGCATTTTCTCGAGTATCAAATGGGACATTTTG
AGGAGTAGGATAATAAAGGTAACATAGTAGTTTTCACATACGGCAATGTAGAAACCAAAGGGTTA
ACAGGGCAATACAATACAATACAATACCTTATCAATCGAGTATATAAATCTCCTCTACTGGAAAG
TCGAGCAATACCTCTCCTTAACGAGCCCTTCGTACCTCTCCCTTCGGTCGAGTGCTTCGCTCCTT
TCCTGTGAAGTCTCGCCAAGAGTACCTCTTACTTCACCTCTTACT
Right flanking sequence: Indices 500205 -- 500704
TCAAAGTAACAAACAAGTATATTAATTAACTCTCCTTTCCAGTCTCGTTCTTCGGGCCTCTCCTG
GTACTGGTCTTAGTCTTAACTACCTATACTTGAGTTTCCTACCTCCTACCTCTACTTGAGGAAAA
AAAGCAAATAGCTCAAGAAACCAAAGCAAATAGCTCAAGAAACCTGCCAGAAAGAAAACAGATAA
GGTAACTACTGCTTGCCCACTCTCTTGGATGGCTCTGTCAAGGGTAAGGGTCTTATCTGACCTCC
TACTCCTAGTTGATATGATTGGTTAGGCATATGAGTAACGAGCCCTATATGACATGGATAGAGAG
CATTTTAACAAGAGTTACGACCACCTCATTTACGTTGACCTATTTCGCCCAATTGTGCCGTGCCT
TAAACACAACTTCTCATGGAGAAATACGGACTTCTTGGATTGGAGCCCCAGGATAGTTATCAATC
TCCTCAGGATAGTTATCAATCTGCTCAGAATAGTTATTAAGTTTA
Found at i:500360 original size:22 final size:22
Alignment explanation
Indices: 500335--500378 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
500325 TTGAGGAAAA
500335 AAAGCAAATAGCTCAAGAAACC
1 AAAGCAAATAGCTCAAGAAACC
500357 AAAGCAAATAGCTCAAGAAACC
1 AAAGCAAATAGCTCAAGAAACC
500379 TGCCAGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.23, G:0.14, T:0.09
Consensus pattern (22 bp):
AAAGCAAATAGCTCAAGAAACC
Left flanking sequence: Indices 499835 -- 500334
AAACTATATAAATGAAATTCGTTGCATTTTCTCGAGTATCAAATGGGACATTTTGAGGAGTAGGA
TAATAAAGGTAACATAGTAGTTTTCACATACGGCAATGTAGAAACCAAAGGGTTAACAGGGCAAT
ACAATACAATACAATACCTTATCAATCGAGTATATAAATCTCCTCTACTGGAAAGTCGAGCAATA
CCTCTCCTTAACGAGCCCTTCGTACCTCTCCCTTCGGTCGAGTGCTTCGCTCCTTTCCTGTGAAG
TCTCGCCAAGAGTACCTCTTACTTCACCTCTTACTTATCACAAGCAAGTCAAATACGTTGGTAAG
GAAATCTATATCACAAGCAAGTCAAATACGTTGGAAATCTATATCTCAAAGTAACAAACAAGTAT
ATTAATTAACTCTCCTTTCCAGTCTCGTTCTTCGGGCCTCTCCTGGTACTGGTCTTAGTCTTAAC
TACCTATACTTGAGTTTCCTACCTCCTACCTCTACTTGAGGAAAA
Right flanking sequence: Indices 500379 -- 500878
TGCCAGAAAGAAAACAGATAAGGTAACTACTGCTTGCCCACTCTCTTGGATGGCTCTGTCAAGGG
TAAGGGTCTTATCTGACCTCCTACTCCTAGTTGATATGATTGGTTAGGCATATGAGTAACGAGCC
CTATATGACATGGATAGAGAGCATTTTAACAAGAGTTACGACCACCTCATTTACGTTGACCTATT
TCGCCCAATTGTGCCGTGCCTTAAACACAACTTCTCATGGAGAAATACGGACTTCTTGGATTGGA
GCCCCAGGATAGTTATCAATCTCCTCAGGATAGTTATCAATCTGCTCAGAATAGTTATTAAGTTT
ATGGGCCAGAATAGTTATTAAGTTTATGGGCTTGACTCTGGATAGTTAGCAAGTTTCAGGATAGT
TGTTCATCTCTCTGATGGAGGAGAGGAATACTTACTTCTTATTTGTTATAATAGAGATTTTCCCT
AGTACTCCCTTTCCTAACTAGCTACATTTCCTTTCTACCCATTGG
Found at i:500669 original size:21 final size:21
Alignment explanation
Indices: 500643--500696 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
500633 ATTGGAGCCC
500643 CAGGATAGTTATCAATCTCCT
1 CAGGATAGTTATCAATCTCCT
*
500664 CAGGATAGTTATCAATCTGCT
1 CAGGATAGTTATCAATCTCCT
*
500685 CAGAATAGTTAT
1 CAGGATAGTTAT
500697 TAAGTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (21 bp):
CAGGATAGTTATCAATCTCCT
Left flanking sequence: Indices 500143 -- 500642
TCAAATACGTTGGTAAGGAAATCTATATCACAAGCAAGTCAAATACGTTGGAAATCTATATCTCA
AAGTAACAAACAAGTATATTAATTAACTCTCCTTTCCAGTCTCGTTCTTCGGGCCTCTCCTGGTA
CTGGTCTTAGTCTTAACTACCTATACTTGAGTTTCCTACCTCCTACCTCTACTTGAGGAAAAAAA
GCAAATAGCTCAAGAAACCAAAGCAAATAGCTCAAGAAACCTGCCAGAAAGAAAACAGATAAGGT
AACTACTGCTTGCCCACTCTCTTGGATGGCTCTGTCAAGGGTAAGGGTCTTATCTGACCTCCTAC
TCCTAGTTGATATGATTGGTTAGGCATATGAGTAACGAGCCCTATATGACATGGATAGAGAGCAT
TTTAACAAGAGTTACGACCACCTCATTTACGTTGACCTATTTCGCCCAATTGTGCCGTGCCTTAA
ACACAACTTCTCATGGAGAAATACGGACTTCTTGGATTGGAGCCC
Right flanking sequence: Indices 500697 -- 501196
TAAGTTTATGGGCCAGAATAGTTATTAAGTTTATGGGCTTGACTCTGGATAGTTAGCAAGTTTCA
GGATAGTTGTTCATCTCTCTGATGGAGGAGAGGAATACTTACTTCTTATTTGTTATAATAGAGAT
TTTCCCTAGTACTCCCTTTCCTAACTAGCTACATTTCCTTTCTACCCATTGGATGTATACCCATT
GGAGTTGTATTGTAACTAACTAGTGCTTATTCAAACTAGTAGAAACTACCTATAATTACCTAGAA
CTAGAACTATCACTATCACTAGAACAAATAACTTACTCTAACTAGAACAAATAACTTACTCTAAC
TAGGTATCTGAGTACTAAGCCAAACTTGCTTTTAGGGTTAGGGAAACCTTACTAACTCAGTAGGG
AACACGTAAACAACTTCCTTTGGTATAAATAACTAAACGGGTAGACTAATAGAAACTAGCTTACT
ACACTACTGAGAAACCTCATAACTAGCTGACAACAAAAGAACTAG
Found at i:500719 original size:25 final size:25
Alignment explanation
Indices: 500685--500734 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
500675 TCAATCTGCT
500685 CAGAATAGTTATTAAGTTTATGGGC
1 CAGAATAGTTATTAAGTTTATGGGC
500710 CAGAATAGTTATTAAGTTTATGGGC
1 CAGAATAGTTATTAAGTTTATGGGC
500735 TTGACTCTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (25 bp):
CAGAATAGTTATTAAGTTTATGGGC
Left flanking sequence: Indices 500185 -- 500684
ATACGTTGGAAATCTATATCTCAAAGTAACAAACAAGTATATTAATTAACTCTCCTTTCCAGTCT
CGTTCTTCGGGCCTCTCCTGGTACTGGTCTTAGTCTTAACTACCTATACTTGAGTTTCCTACCTC
CTACCTCTACTTGAGGAAAAAAAGCAAATAGCTCAAGAAACCAAAGCAAATAGCTCAAGAAACCT
GCCAGAAAGAAAACAGATAAGGTAACTACTGCTTGCCCACTCTCTTGGATGGCTCTGTCAAGGGT
AAGGGTCTTATCTGACCTCCTACTCCTAGTTGATATGATTGGTTAGGCATATGAGTAACGAGCCC
TATATGACATGGATAGAGAGCATTTTAACAAGAGTTACGACCACCTCATTTACGTTGACCTATTT
CGCCCAATTGTGCCGTGCCTTAAACACAACTTCTCATGGAGAAATACGGACTTCTTGGATTGGAG
CCCCAGGATAGTTATCAATCTCCTCAGGATAGTTATCAATCTGCT
Right flanking sequence: Indices 500735 -- 501234
TTGACTCTGGATAGTTAGCAAGTTTCAGGATAGTTGTTCATCTCTCTGATGGAGGAGAGGAATAC
TTACTTCTTATTTGTTATAATAGAGATTTTCCCTAGTACTCCCTTTCCTAACTAGCTACATTTCC
TTTCTACCCATTGGATGTATACCCATTGGAGTTGTATTGTAACTAACTAGTGCTTATTCAAACTA
GTAGAAACTACCTATAATTACCTAGAACTAGAACTATCACTATCACTAGAACAAATAACTTACTC
TAACTAGAACAAATAACTTACTCTAACTAGGTATCTGAGTACTAAGCCAAACTTGCTTTTAGGGT
TAGGGAAACCTTACTAACTCAGTAGGGAACACGTAAACAACTTCCTTTGGTATAAATAACTAAAC
GGGTAGACTAATAGAAACTAGCTTACTACACTACTGAGAAACCTCATAACTAGCTGACAACAAAA
GAACTAGCTGACAGTTAGTTACGTTACCTGTAATACTCGAAGGAG
Found at i:501003 original size:23 final size:23
Alignment explanation
Indices: 500974--501024 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
500964 TATCACTATC
500974 ACTAGAACAAATAACTTACTCTA
1 ACTAGAACAAATAACTTACTCTA
500997 ACTAGAACAAATAACTTACTCTA
1 ACTAGAACAAATAACTTACTCTA
501020 ACTAG
1 ACTAG
501025 GTATCTGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.47, C:0.22, G:0.06, T:0.25
Consensus pattern (23 bp):
ACTAGAACAAATAACTTACTCTA
Left flanking sequence: Indices 500474 -- 500973
TTGATATGATTGGTTAGGCATATGAGTAACGAGCCCTATATGACATGGATAGAGAGCATTTTAAC
AAGAGTTACGACCACCTCATTTACGTTGACCTATTTCGCCCAATTGTGCCGTGCCTTAAACACAA
CTTCTCATGGAGAAATACGGACTTCTTGGATTGGAGCCCCAGGATAGTTATCAATCTCCTCAGGA
TAGTTATCAATCTGCTCAGAATAGTTATTAAGTTTATGGGCCAGAATAGTTATTAAGTTTATGGG
CTTGACTCTGGATAGTTAGCAAGTTTCAGGATAGTTGTTCATCTCTCTGATGGAGGAGAGGAATA
CTTACTTCTTATTTGTTATAATAGAGATTTTCCCTAGTACTCCCTTTCCTAACTAGCTACATTTC
CTTTCTACCCATTGGATGTATACCCATTGGAGTTGTATTGTAACTAACTAGTGCTTATTCAAACT
AGTAGAAACTACCTATAATTACCTAGAACTAGAACTATCACTATC
Right flanking sequence: Indices 501025 -- 501524
GTATCTGAGTACTAAGCCAAACTTGCTTTTAGGGTTAGGGAAACCTTACTAACTCAGTAGGGAAC
ACGTAAACAACTTCCTTTGGTATAAATAACTAAACGGGTAGACTAATAGAAACTAGCTTACTACA
CTACTGAGAAACCTCATAACTAGCTGACAACAAAAGAACTAGCTGACAGTTAGTTACGTTACCTG
TAATACTCGAAGGAGACATTTCCTTACTAACCTTTTCCGATCCGTTGTATACTTATACTACCTAG
TGCTTATGCTTAGAAAGAAACTTACCAATATGGAACATATCCATTAGCTACAGTAAGTACAGGTA
TTCCGGATATACCCGAAACGGCATTATTAGAGAGGTACGAAGTCCTATACGCCGAGATTTCTCTT
ACTGGACGAAGACAAACCTTGCCCTTAGGGATTAAGCTAACCCTAGTAAAGGTCCCCCAACGCTT
AGCTAACCCAAGGAACTAACTACAGAACTTTGTAGCAAAGTTGAT
Found at i:501789 original size:13 final size:13
Alignment explanation
Indices: 501771--501823 Score: 97
Period size: 13 Copynumber: 4.1 Consensus size: 13
501761 ATTATATATA
501771 TAGAAACATTAGC
1 TAGAAACATTAGC
*
501784 TAGAAACATTAAC
1 TAGAAACATTAGC
501797 TAGAAACATTAGC
1 TAGAAACATTAGC
501810 TAGAAACATTAGC
1 TAGAAACATTAGC
501823 T
1 T
501824 GCAGGTTACA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.25
Consensus pattern (13 bp):
TAGAAACATTAGC
Left flanking sequence: Indices 501271 -- 501770
CTTATACTACCTAGTGCTTATGCTTAGAAAGAAACTTACCAATATGGAACATATCCATTAGCTAC
AGTAAGTACAGGTATTCCGGATATACCCGAAACGGCATTATTAGAGAGGTACGAAGTCCTATACG
CCGAGATTTCTCTTACTGGACGAAGACAAACCTTGCCCTTAGGGATTAAGCTAACCCTAGTAAAG
GTCCCCCAACGCTTAGCTAACCCAAGGAACTAACTACAGAACTTTGTAGCAAAGTTGATAGACTA
CAGAACTCAGGAACAAGAGAACAGAACAAACGAATATTACCTATGTCATTCTATTAACGCCTAGC
GTACTTCGTATGCCCTCTCCTAACGAAGTATTACAAAAGTATATAGCGACTACCTTACGGCACCA
AAAGGAGCGAGTGAGCGTAGCTACAACTTCCTTTCTTGAACAACATTACTGGATTGACTCTCTTT
CCTTGGTTTACTAGCTACAGGAGAAAGAATGAGATATTATATATA
Right flanking sequence: Indices 501824 -- 502323
GCAGGTTACATCCCATTGACCGGAAACAACAACAACTGGTACGAAGTCCTTTGTTGAACAACATT
ACTGGTACGAAGTCCTTTCCTGCCGTTGAACAACTGGATTGGTTAGCTTTCCTTGCTTTGTTGAA
CAACCGTATTCCTGTAACCCTCTCCTTACTAGCTACTGCTTTCCTTACTACTTTCTACAACGAAA
CGGACCATTCATTACCTAAGTATTGTAACTAACTAGTGCTTATGAACTAGCAACTACCGGCAGTA
TATGAACTAGTAGCTTAGGACTAAGGAACTAGCCTATTAGCTAGAAACTATCACCTATAACTATC
ACAAACTCCAACCTCTAACTCTTGCTATCAGAGTGGACTAATCTCGAGGTTTCTTTCATAGTGTC
TTAAACCCCAGTTTTCTAGGACAAATACTGATTGTAGCTATCCCTCAGGAAAGTGCGAAGGATAT
ATATCAATATACTCCGGCTAGTCTTATGAGGTTTGGTTTCTGAGC
Found at i:502612 original size:19 final size:19
Alignment explanation
Indices: 502588--502638 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
502578 CTTACCCAGA
*
502588 TGGGGTGTATATATTAAGC
1 TGGGGTATATATATTAAGC
502607 TGGGGTATATATATTAAGC
1 TGGGGTATATATATTAAGC
502626 TGGGGTATATATA
1 TGGGGTATATATA
502639 ATAACAAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.37
Consensus pattern (19 bp):
TGGGGTATATATATTAAGC
Left flanking sequence: Indices 502088 -- 502587
AACTAGTAGCTTAGGACTAAGGAACTAGCCTATTAGCTAGAAACTATCACCTATAACTATCACAA
ACTCCAACCTCTAACTCTTGCTATCAGAGTGGACTAATCTCGAGGTTTCTTTCATAGTGTCTTAA
ACCCCAGTTTTCTAGGACAAATACTGATTGTAGCTATCCCTCAGGAAAGTGCGAAGGATATATAT
CAATATACTCCGGCTAGTCTTATGAGGTTTGGTTTCTGAGCTATACTGCGTGGAGTTATTCAGTT
TCTGAGCTCTACTCCGTTGTTATTCAGAATCCGAGGGAACCCCCAGATAGTAGTTATCCATCATC
GGACGTAACACGTAACCTCATCAATAGAGTTAGACCGGATCCGAGGAAACCGAAATTGAGTTAGA
CATGAAATGGGCTCCGCTAGAGTTCTCAAGTTTTCTATCTCGTCCCTAAGGAAATCAAACTATCC
GGAGTGGAATTAGGAAATGATGTTCACCTAGCATGCTTACCCAGA
Right flanking sequence: Indices 502639 -- 503138
ATAACAAAGGCTTTTCCCTATCCTAGCAGAAATCTATTACCTCTTCGTTTGTTTCCTCTTCTACA
TTCCATTCACTATTAGCTCATAGGTGGAGGTTTCGTCGAGTATATAAAAGAACCTCGAGTCAAAA
GGACCTGGAAAGTAGAAACTAGAGCAATAGATGGATGATAAAGAGCTTTTCCTTACAGTTGAGTG
TCTTACAATTACAAATACAAGTACAAGTACTCGAAAGTCTCTACAAAGAGGGAGGTACTAAGCTA
TACCCATATGAAATTATGGAAAGAAATGGGATTATCGATATGAAATTATGGAAAGAAATGGGATT
ATCGATAAAAAACTTGCGTTTTACATGGAGCAAAAGTAAGCGTTTCCTTCGTAAAAGTTCTCAAT
TGGGAGACTTTTCGAGAGGTTTTCTTTTAAATATCGTATATTATGTCATTTTTCAAACTCTCGAA
ATGAGTTGCTAAAACACGTCATTTTTCATTGCAAATGGGACATTT
Found at i:502945 original size:32 final size:32
Alignment explanation
Indices: 502904--502970 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
502894 AGCTATACCC
502904 ATATGAAATTATGGAAAGAAATGGGATTATCG
1 ATATGAAATTATGGAAAGAAATGGGATTATCG
502936 ATATGAAATTATGGAAAGAAATGGGATTATCG
1 ATATGAAATTATGGAAAGAAATGGGATTATCG
502968 ATA
1 ATA
502971 AAAAACTTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.45, C:0.03, G:0.24, T:0.28
Consensus pattern (32 bp):
ATATGAAATTATGGAAAGAAATGGGATTATCG
Left flanking sequence: Indices 502404 -- 502903
TCCATCATCGGACGTAACACGTAACCTCATCAATAGAGTTAGACCGGATCCGAGGAAACCGAAAT
TGAGTTAGACATGAAATGGGCTCCGCTAGAGTTCTCAAGTTTTCTATCTCGTCCCTAAGGAAATC
AAACTATCCGGAGTGGAATTAGGAAATGATGTTCACCTAGCATGCTTACCCAGATGGGGTGTATA
TATTAAGCTGGGGTATATATATTAAGCTGGGGTATATATAATAACAAAGGCTTTTCCCTATCCTA
GCAGAAATCTATTACCTCTTCGTTTGTTTCCTCTTCTACATTCCATTCACTATTAGCTCATAGGT
GGAGGTTTCGTCGAGTATATAAAAGAACCTCGAGTCAAAAGGACCTGGAAAGTAGAAACTAGAGC
AATAGATGGATGATAAAGAGCTTTTCCTTACAGTTGAGTGTCTTACAATTACAAATACAAGTACA
AGTACTCGAAAGTCTCTACAAAGAGGGAGGTACTAAGCTATACCC
Right flanking sequence: Indices 502971 -- 503470
AAAAACTTGCGTTTTACATGGAGCAAAAGTAAGCGTTTCCTTCGTAAAAGTTCTCAATTGGGAGA
CTTTTCGAGAGGTTTTCTTTTAAATATCGTATATTATGTCATTTTTCAAACTCTCGAAATGAGTT
GCTAAAACACGTCATTTTTCATTGCAAATGGGACATTTCTCGGAGTAGTATCCCAAAGTTAACAT
CTTTGTTGTTACATGCCGGAATTCCTAAACCAAAGGGTTAACAGGTCAATACAATACAATAACTC
TCCTTATCTGGGAAGTCTAGTATATAAATCTCCTCTACTGGCAAGTATAGAGCAACTAACATCTG
AGCACTAACGGAATCTAACAACCTATAGAAAAGGAACTAACTAACTCGAGAACTATCACCCGCAA
ACTACCAACTCAGGAACAAAGGATCCAATATGGACTAGCAACGAAAAACAAACCCTAGTACTTCT
TTTCCTAACTAGCAAACTAAACCTAGAACTAGAAGAAACCAACCC
Found at i:503524 original size:19 final size:19
Alignment explanation
Indices: 503500--503538 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
503490 TATAAACTAT
503500 ACTATCTATGGACTACCGA
1 ACTATCTATGGACTACCGA
503519 ACTATCTATGGACTACCGA
1 ACTATCTATGGACTACCGA
503538 A
1 A
503539 AACATGCCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (19 bp):
ACTATCTATGGACTACCGA
Left flanking sequence: Indices 503000 -- 503499
TAAGCGTTTCCTTCGTAAAAGTTCTCAATTGGGAGACTTTTCGAGAGGTTTTCTTTTAAATATCG
TATATTATGTCATTTTTCAAACTCTCGAAATGAGTTGCTAAAACACGTCATTTTTCATTGCAAAT
GGGACATTTCTCGGAGTAGTATCCCAAAGTTAACATCTTTGTTGTTACATGCCGGAATTCCTAAA
CCAAAGGGTTAACAGGTCAATACAATACAATAACTCTCCTTATCTGGGAAGTCTAGTATATAAAT
CTCCTCTACTGGCAAGTATAGAGCAACTAACATCTGAGCACTAACGGAATCTAACAACCTATAGA
AAAGGAACTAACTAACTCGAGAACTATCACCCGCAAACTACCAACTCAGGAACAAAGGATCCAAT
ATGGACTAGCAACGAAAAACAAACCCTAGTACTTCTTTTCCTAACTAGCAAACTAAACCTAGAAC
TAGAAGAAACCAACCCATTCTAACGCTATTACCTCTATAAACTAT
Right flanking sequence: Indices 503539 -- 504038
AACATGCCGGAAAACCCTAGCTAACCCTATGCGATTTCCTTAACAACTAGCTAGAAAAGTATGAT
CTCTACGGCACTCAGTATTACCGTTGTATATACCGGCAACCCATCATACTAGAAAACCTAAGGGA
AATACAACTGAAAGTTAGGTTACCGACTCTCTTCTCTTTCCCACCTTGCGGACTAATCCCTATAT
TCGCCCAATTGTGCTTCTTGCGGACAAATACTGCCTTCTTGGAGCTATACCTGAAGATAGTTAGA
AATATCCTCATCCTCTTCATAGTTATCATAGTTATCATAGTTATCATATATAGTTTATGGGCTTT
CCTCTGGCTAGTTTTACATCAAACGGTCTACCTGTTCTCAAGTTTCCGGATAGTTATCAAGTGGT
TGATCTCTCTGAGACTTCTTATTTAAGGAAAAGGAACGGACTTCGTTAACCCAATCCTAGTATTG
TCAGAGAAAGTTAGTACATGAAAGTGCATGAAAGAAAAGCAGGAA
Found at i:503827 original size:9 final size:9
Alignment explanation
Indices: 503815--503846 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
503805 CTCATCCTCT
503815 TCATAGTTA
1 TCATAGTTA
503824 TCATAGTTA
1 TCATAGTTA
503833 TCATAGTTA
1 TCATAGTTA
503842 TCATA
1 TCATA
503847 TATAGTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.44
Consensus pattern (9 bp):
TCATAGTTA
Left flanking sequence: Indices 503315 -- 503814
AACCTATAGAAAAGGAACTAACTAACTCGAGAACTATCACCCGCAAACTACCAACTCAGGAACAA
AGGATCCAATATGGACTAGCAACGAAAAACAAACCCTAGTACTTCTTTTCCTAACTAGCAAACTA
AACCTAGAACTAGAAGAAACCAACCCATTCTAACGCTATTACCTCTATAAACTATACTATCTATG
GACTACCGAACTATCTATGGACTACCGAAAACATGCCGGAAAACCCTAGCTAACCCTATGCGATT
TCCTTAACAACTAGCTAGAAAAGTATGATCTCTACGGCACTCAGTATTACCGTTGTATATACCGG
CAACCCATCATACTAGAAAACCTAAGGGAAATACAACTGAAAGTTAGGTTACCGACTCTCTTCTC
TTTCCCACCTTGCGGACTAATCCCTATATTCGCCCAATTGTGCTTCTTGCGGACAAATACTGCCT
TCTTGGAGCTATACCTGAAGATAGTTAGAAATATCCTCATCCTCT
Right flanking sequence: Indices 503847 -- 504346
TATAGTTTATGGGCTTTCCTCTGGCTAGTTTTACATCAAACGGTCTACCTGTTCTCAAGTTTCCG
GATAGTTATCAAGTGGTTGATCTCTCTGAGACTTCTTATTTAAGGAAAAGGAACGGACTTCGTTA
ACCCAATCCTAGTATTGTCAGAGAAAGTTAGTACATGAAAGTGCATGAAAGAAAAGCAGGAATGC
CCAATTAAACAGACTGACTTTGACCCCAGTTGAGTTGAGAACAATCCGTTATAGTTTATCCATCC
GAGCACTCTATACACCGTGAAACCTATACTTTTCTCAGCTAAACATGCCGCCTTCTGAACTAGCA
ACGGATAGCTTACCTTCTGAACTAGCAACGGATAGCTTACCTTATAAAAAGGAACCTAGTGCTTA
TCTTAACAAACCCTAGTACTCCCTTCCTTTCGTAACTAGCTACTCAACTAACTCAAACCTCTAAC
TAGCTAACTAGCTAGGAAACAAACCCCTATACTATAACTAGCTAC
Found at i:504195 original size:27 final size:27
Alignment explanation
Indices: 504157--504214 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
504147 AAACATGCCG
504157 CCTTCTGAACTAGCAACGGATAGCTTA
1 CCTTCTGAACTAGCAACGGATAGCTTA
504184 CCTTCTGAACTAGCAACGGATAGCTTA
1 CCTTCTGAACTAGCAACGGATAGCTTA
504211 CCTT
1 CCTT
504215 ATAAAAAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (27 bp):
CCTTCTGAACTAGCAACGGATAGCTTA
Left flanking sequence: Indices 503657 -- 504156
AAACCTAAGGGAAATACAACTGAAAGTTAGGTTACCGACTCTCTTCTCTTTCCCACCTTGCGGAC
TAATCCCTATATTCGCCCAATTGTGCTTCTTGCGGACAAATACTGCCTTCTTGGAGCTATACCTG
AAGATAGTTAGAAATATCCTCATCCTCTTCATAGTTATCATAGTTATCATAGTTATCATATATAG
TTTATGGGCTTTCCTCTGGCTAGTTTTACATCAAACGGTCTACCTGTTCTCAAGTTTCCGGATAG
TTATCAAGTGGTTGATCTCTCTGAGACTTCTTATTTAAGGAAAAGGAACGGACTTCGTTAACCCA
ATCCTAGTATTGTCAGAGAAAGTTAGTACATGAAAGTGCATGAAAGAAAAGCAGGAATGCCCAAT
TAAACAGACTGACTTTGACCCCAGTTGAGTTGAGAACAATCCGTTATAGTTTATCCATCCGAGCA
CTCTATACACCGTGAAACCTATACTTTTCTCAGCTAAACATGCCG
Right flanking sequence: Indices 504215 -- 504714
ATAAAAAGGAACCTAGTGCTTATCTTAACAAACCCTAGTACTCCCTTCCTTTCGTAACTAGCTAC
TCAACTAACTCAAACCTCTAACTAGCTAACTAGCTAGGAAACAAACCCCTATACTATAACTAGCT
ACCTCAAGAACCAAGCAACCAAGCAAATTACTAACTCAGCAAATCACTAGCTCACTAACTCAGCA
AATAACTATTCCCGCAGTATATACATTTGAGACTAACTAGCTAACTAGTACCTCAGAGTGCCTCA
CTATTACCCAAGTATAGAGCCACTACTTTCGTGAGCCCCTACGGTCACTCGTTAGCTACAACTTG
CTTTTCCTTTGGTATAACTACTGTATTAGCTCTTTCTTCTGTTTCCTTGGTTGACTGAGGTTAAC
TTAGTTTACTAGTTGCCTAGCTGACATTGAGTAGCTGACATTGTAACTTGAGGTTCTATACTAAT
ACTAATACTAAACGAAACAACCAAGGTAGCTGCACCCATCCATCT
Found at i:504811 original size:35 final size:35
Alignment explanation
Indices: 504744--504814 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 35
504734 TTTGGTGTAG
* * *
504744 CTTGCTTTCCTTATCCGCTCACGGAGTGAACTACA
1 CTTGCTTTCCTTATCCGATCACCGAGTAAACTACA
504779 CTTGCTTTCCTTATCCGATCACTCG-GTAAACTACA
1 CTTGCTTTCCTTATCCGATCAC-CGAGTAAACTACA
504814 C
1 C
504815 CTTCAGCTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 31 0.97
36 1 0.03
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.32
Consensus pattern (35 bp):
CTTGCTTTCCTTATCCGATCACCGAGTAAACTACA
Left flanking sequence: Indices 504244 -- 504743
AAACCCTAGTACTCCCTTCCTTTCGTAACTAGCTACTCAACTAACTCAAACCTCTAACTAGCTAA
CTAGCTAGGAAACAAACCCCTATACTATAACTAGCTACCTCAAGAACCAAGCAACCAAGCAAATT
ACTAACTCAGCAAATCACTAGCTCACTAACTCAGCAAATAACTATTCCCGCAGTATATACATTTG
AGACTAACTAGCTAACTAGTACCTCAGAGTGCCTCACTATTACCCAAGTATAGAGCCACTACTTT
CGTGAGCCCCTACGGTCACTCGTTAGCTACAACTTGCTTTTCCTTTGGTATAACTACTGTATTAG
CTCTTTCTTCTGTTTCCTTGGTTGACTGAGGTTAACTTAGTTTACTAGTTGCCTAGCTGACATTG
AGTAGCTGACATTGTAACTTGAGGTTCTATACTAATACTAATACTAAACGAAACAACCAAGGTAG
CTGCACCCATCCATCTTTCGTTAGTAGTTCCCGTCTTTGGTGTAG
Right flanking sequence: Indices 504815 -- 505314
CTTCAGCTATCTATTAGCTAGACTAGTAGAGTAGCCTAATGTAATGCAAAGAGCAACTACCGGCG
TACCGGACGTACTATCCATCGTGTTTGTTACCTATATAAATAGAATGAAACAAGTAGCTTTCTTA
ACTAATAGCGATTAGCTTACCTAAGAGAAACCCCAGAGAACCCAAAGAGAAACCAACGCAAAACC
AAGAGCTTACCTGTATAACTCCGAACTCAGGAACTCATATTACCTATGTCATTCTATTAACGCTG
CCGCTGGAAAAGTATGCCCTCTCCTAAACGAAGTATTACCCAAGTATATAGCGACTACCTTCGTG
ACAAAAGGAGGTAACTCATTAGTATTAGTATTAGTTCCAACTTCCTTTGTTGAAGAACTGTATTG
GTTAGCTTCCTTGGTTGAGTAGCTGACATTGGCTCTCTTGATTTATTTATTAGCTACAGTCCCCT
CATGGGTCGGCTCACAACAGAACAAAAGAAGAAGATTTTCTATCA
Found at i:506007 original size:9 final size:9
Alignment explanation
Indices: 505986--506025 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
505976 AATCCGGGAT
505986 CAAT-CTAA
1 CAATCCTAA
505994 CAATCCTAA
1 CAATCCTAA
*
506003 GAATCCTAA
1 CAATCCTAA
506012 CAATCCTAA
1 CAATCCTAA
506021 CAATC
1 CAATC
506026 GAAGCAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 4 0.14
9 25 0.86
ACGTcount: A:0.45, C:0.30, G:0.03, T:0.23
Consensus pattern (9 bp):
CAATCCTAA
Left flanking sequence: Indices 505486 -- 505985
CTCGTAGATGAAATGAACTTGTACCCATGTAGACTTAGTACATACAGATTTGATTACGACTTACT
AACTAATTACTAACTAAAGGATTACCCAATACAATACAGTAGGATTCCCCAATACAGTAGCCGCT
CTTTTCTTTCTTCATTCAGTCGGTCAGCACGCTTCCACCAACCGTCACTCCTATCGTCGCTAGCT
TGTTAGCTATTCCCTTCCTCATTCGTAGAGCTACACCTCCAATACAATCCGATACAACTAGCTTG
GTTGACTTCCTTGGTTGAGTAGCTGACAAAGTAACTAGTTGACTAGCTTCGTTGACTAGCTGACA
AAGTACCGAGTTACCTCCTCCACACAGAACTCACTCGTCACGCTACAACCTAAAACCTTTCCTTT
CCCATCATACTAGCTACCAGACTCTCCATACTAGTTTACCTTACTTAGCAAAACAAGGAGCTGGA
CTTACTAATAGCTACTAGCTTCCCTTAGCAAACCCAATCCGGGAT
Right flanking sequence: Indices 506026 -- 506525
GAAGCAAATCCTATCCGGCATCAATCAACCAATCCAATACCCAATCTATAGAAATCATATGATAT
TAGTGCATGAAAGTTCATTGAAGAAAACAAGGGGTAGCTTACCAAGGAAAAGGAAAGTGCCAACT
TAGTACTATCTTTCGTAACTATCTAGAAAACGAATGAATCTCTACCTATCTCTCTAACTAGCAAG
CAGTACTACTCTACTTCAAATGAAAAAGAACCTCTAACTAGCAAGCAGTACTACTTCAAATGAAA
ACGAACCTATAACTAGCAGTATGCAAAACTCACCGTTCCCTAAGTATCTTAACTACCTAGTGCTT
CAAAACAAACTAGCTAGAGAATGGAGAACTAATTTCTTTTCTCCTCTAATCAGGAACTCGAGAAT
AGAGAACTAATTTGTCCTCTATCTAATCAGGAACTCAAGAATAGAACTAAACGGATAGCTTTCGT
TACTAATAGAAACGGCGCTTACGCTTACTACCCATTTCCGGCACC
Found at i:506286 original size:40 final size:42
Alignment explanation
Indices: 506207--506303 Score: 135
Period size: 40 Copynumber: 2.3 Consensus size: 42
506197 CTACCTATCT
506207 CTCTAACTAGCAAGCAGTACTACTCTACTTCAAATGAAAAAGAAC
1 CTCTAACTAGCAAGCAG-A-TAC-CTACTTCAAATGAAAAAGAAC
*
506252 CTCTAACTAGCAAGCAG-TA-CTACTTCAAATGAAAACGAAC
1 CTCTAACTAGCAAGCAGATACCTACTTCAAATGAAAAAGAAC
*
506292 CTATAACTAGCA
1 CTCTAACTAGCA
506304 GTATGCAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
40 31 0.62
42 2 0.04
45 17 0.34
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (42 bp):
CTCTAACTAGCAAGCAGATACCTACTTCAAATGAAAAAGAAC
Left flanking sequence: Indices 505707 -- 506206
AGAGCTACACCTCCAATACAATCCGATACAACTAGCTTGGTTGACTTCCTTGGTTGAGTAGCTGA
CAAAGTAACTAGTTGACTAGCTTCGTTGACTAGCTGACAAAGTACCGAGTTACCTCCTCCACACA
GAACTCACTCGTCACGCTACAACCTAAAACCTTTCCTTTCCCATCATACTAGCTACCAGACTCTC
CATACTAGTTTACCTTACTTAGCAAAACAAGGAGCTGGACTTACTAATAGCTACTAGCTTCCCTT
AGCAAACCCAATCCGGGATCAATCTAACAATCCTAAGAATCCTAACAATCCTAACAATCGAAGCA
AATCCTATCCGGCATCAATCAACCAATCCAATACCCAATCTATAGAAATCATATGATATTAGTGC
ATGAAAGTTCATTGAAGAAAACAAGGGGTAGCTTACCAAGGAAAAGGAAAGTGCCAACTTAGTAC
TATCTTTCGTAACTATCTAGAAAACGAATGAATCTCTACCTATCT
Right flanking sequence: Indices 506304 -- 506803
GTATGCAAAACTCACCGTTCCCTAAGTATCTTAACTACCTAGTGCTTCAAAACAAACTAGCTAGA
GAATGGAGAACTAATTTCTTTTCTCCTCTAATCAGGAACTCGAGAATAGAGAACTAATTTGTCCT
CTATCTAATCAGGAACTCAAGAATAGAACTAAACGGATAGCTTTCGTTACTAATAGAAACGGCGC
TTACGCTTACTACCCATTTCCGGCACCACCATGTGGACTAAGTATTTTAACTACCGGCGTGCTTA
GTAAACTCGCTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAACTAGAGAAGTAATATG
TTTTCTGCTTGCTCTAACGTACAACTAGAGAACTATTTCTATAAGTTGATAGACTCTGTAAGAAA
CGAATATATGCATTATCCATCTATCTGTTAGATTTTTGAGTTATACGCTAACTCAGTATTACCAT
ATAATATATCCACCTTAACCTTAGTTGATTGACTTAGCTGAGAAA
Found at i:506415 original size:43 final size:41
Alignment explanation
Indices: 506367--506465 Score: 119
Period size: 43 Copynumber: 2.4 Consensus size: 41
506357 AAACTAGCTA
** *
506367 GAGAATGGAGAACTAATTTCTTTTCTCCTCTAATCAGGAACTC
1 GAGAAT-GAGAACTAATTTCTCCTCT-ATCTAATCAGGAACTC
*
506410 GAGAATAGAGAACTAATTTGTCCTCTATCTAATCAGGAACTC
1 GAGAAT-GAGAACTAATTTCTCCTCTATCTAATCAGGAACTC
*
506452 AAGAAT-AGAACTAA
1 GAGAATGAGAACTAA
506466 ACGGATAGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
40 8 0.16
42 20 0.40
43 22 0.44
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (41 bp):
GAGAATGAGAACTAATTTCTCCTCTATCTAATCAGGAACTC
Left flanking sequence: Indices 505867 -- 506366
CTTTCCTTTCCCATCATACTAGCTACCAGACTCTCCATACTAGTTTACCTTACTTAGCAAAACAA
GGAGCTGGACTTACTAATAGCTACTAGCTTCCCTTAGCAAACCCAATCCGGGATCAATCTAACAA
TCCTAAGAATCCTAACAATCCTAACAATCGAAGCAAATCCTATCCGGCATCAATCAACCAATCCA
ATACCCAATCTATAGAAATCATATGATATTAGTGCATGAAAGTTCATTGAAGAAAACAAGGGGTA
GCTTACCAAGGAAAAGGAAAGTGCCAACTTAGTACTATCTTTCGTAACTATCTAGAAAACGAATG
AATCTCTACCTATCTCTCTAACTAGCAAGCAGTACTACTCTACTTCAAATGAAAAAGAACCTCTA
ACTAGCAAGCAGTACTACTTCAAATGAAAACGAACCTATAACTAGCAGTATGCAAAACTCACCGT
TCCCTAAGTATCTTAACTACCTAGTGCTTCAAAACAAACTAGCTA
Right flanking sequence: Indices 506466 -- 506965
ACGGATAGCTTTCGTTACTAATAGAAACGGCGCTTACGCTTACTACCCATTTCCGGCACCACCAT
GTGGACTAAGTATTTTAACTACCGGCGTGCTTAGTAAACTCGCTAGAGAAGTAATATGTTTTCTG
CTTGCTCTAACGTACAACTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAACTAGAGAA
CTATTTCTATAAGTTGATAGACTCTGTAAGAAACGAATATATGCATTATCCATCTATCTGTTAGA
TTTTTGAGTTATACGCTAACTCAGTATTACCATATAATATATCCACCTTAACCTTAGTTGATTGA
CTTAGCTGAGAAACTGGCGGAACTACCTGCCATTAGAACTCAGTTTACTACAAGGAAAAGACAAC
AAACCTTCCGGGAGTACTATCTTTCCTAATCCGTTGTTGACTATCTTTCCGTTGTTGACTATCTT
TCCGTTGTTGATTAGCTTCCGTTGTTGATTAGCTTCCGTTGTTGA
Found at i:506457 original size:42 final size:43
Alignment explanation
Indices: 506368--506460 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 43
506358 AACTAGCTAG
* ** * *
506368 AGAATGGAGAACTAATTTCTTTTCTCCTCTAATCAGGAACTCG
1 AGAATAGAGAACTAATTTCTCCTCTCATCTAATCAGGAACTCA
*
506411 AGAATAGAGAACTAATTTGTCCTCT-ATCTAATCAGGAACTCA
1 AGAATAGAGAACTAATTTCTCCTCTCATCTAATCAGGAACTCA
506453 AGAATAGA
1 AGAATAGA
506461 ACTAAACGGA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 23 0.52
43 21 0.48
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (43 bp):
AGAATAGAGAACTAATTTCTCCTCTCATCTAATCAGGAACTCA
Left flanking sequence: Indices 505868 -- 506367
TTTCCTTTCCCATCATACTAGCTACCAGACTCTCCATACTAGTTTACCTTACTTAGCAAAACAAG
GAGCTGGACTTACTAATAGCTACTAGCTTCCCTTAGCAAACCCAATCCGGGATCAATCTAACAAT
CCTAAGAATCCTAACAATCCTAACAATCGAAGCAAATCCTATCCGGCATCAATCAACCAATCCAA
TACCCAATCTATAGAAATCATATGATATTAGTGCATGAAAGTTCATTGAAGAAAACAAGGGGTAG
CTTACCAAGGAAAAGGAAAGTGCCAACTTAGTACTATCTTTCGTAACTATCTAGAAAACGAATGA
ATCTCTACCTATCTCTCTAACTAGCAAGCAGTACTACTCTACTTCAAATGAAAAAGAACCTCTAA
CTAGCAAGCAGTACTACTTCAAATGAAAACGAACCTATAACTAGCAGTATGCAAAACTCACCGTT
CCCTAAGTATCTTAACTACCTAGTGCTTCAAAACAAACTAGCTAG
Right flanking sequence: Indices 506461 -- 506960
ACTAAACGGATAGCTTTCGTTACTAATAGAAACGGCGCTTACGCTTACTACCCATTTCCGGCACC
ACCATGTGGACTAAGTATTTTAACTACCGGCGTGCTTAGTAAACTCGCTAGAGAAGTAATATGTT
TTCTGCTTGCTCTAACGTACAACTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAACTA
GAGAACTATTTCTATAAGTTGATAGACTCTGTAAGAAACGAATATATGCATTATCCATCTATCTG
TTAGATTTTTGAGTTATACGCTAACTCAGTATTACCATATAATATATCCACCTTAACCTTAGTTG
ATTGACTTAGCTGAGAAACTGGCGGAACTACCTGCCATTAGAACTCAGTTTACTACAAGGAAAAG
ACAACAAACCTTCCGGGAGTACTATCTTTCCTAATCCGTTGTTGACTATCTTTCCGTTGTTGACT
ATCTTTCCGTTGTTGATTAGCTTCCGTTGTTGATTAGCTTCCGTT
Found at i:506617 original size:40 final size:40
Alignment explanation
Indices: 506573--506660 Score: 176
Period size: 40 Copynumber: 2.2 Consensus size: 40
506563 AGTAAACTCG
506573 CTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAA
1 CTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAA
506613 CTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAA
1 CTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAA
506653 CTAGAGAA
1 CTAGAGAA
506661 CTATTTCTAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (40 bp):
CTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAA
Left flanking sequence: Indices 506073 -- 506572
ATAGAAATCATATGATATTAGTGCATGAAAGTTCATTGAAGAAAACAAGGGGTAGCTTACCAAGG
AAAAGGAAAGTGCCAACTTAGTACTATCTTTCGTAACTATCTAGAAAACGAATGAATCTCTACCT
ATCTCTCTAACTAGCAAGCAGTACTACTCTACTTCAAATGAAAAAGAACCTCTAACTAGCAAGCA
GTACTACTTCAAATGAAAACGAACCTATAACTAGCAGTATGCAAAACTCACCGTTCCCTAAGTAT
CTTAACTACCTAGTGCTTCAAAACAAACTAGCTAGAGAATGGAGAACTAATTTCTTTTCTCCTCT
AATCAGGAACTCGAGAATAGAGAACTAATTTGTCCTCTATCTAATCAGGAACTCAAGAATAGAAC
TAAACGGATAGCTTTCGTTACTAATAGAAACGGCGCTTACGCTTACTACCCATTTCCGGCACCAC
CATGTGGACTAAGTATTTTAACTACCGGCGTGCTTAGTAAACTCG
Right flanking sequence: Indices 506661 -- 507160
CTATTTCTATAAGTTGATAGACTCTGTAAGAAACGAATATATGCATTATCCATCTATCTGTTAGA
TTTTTGAGTTATACGCTAACTCAGTATTACCATATAATATATCCACCTTAACCTTAGTTGATTGA
CTTAGCTGAGAAACTGGCGGAACTACCTGCCATTAGAACTCAGTTTACTACAAGGAAAAGACAAC
AAACCTTCCGGGAGTACTATCTTTCCTAATCCGTTGTTGACTATCTTTCCGTTGTTGACTATCTT
TCCGTTGTTGATTAGCTTCCGTTGTTGATTAGCTTCCGTTGTTGATTAGCTTCCTGTTGTTGATG
CCGCTTCCGTTGTTGATTAGCTTCCTGTTATGTTAATGTTAGCTACGGGTATTGATATTGGTATT
CTCAATCGCCTACGCTGGCGGCTAGCTGACAGTTAGTTACCTGTCTGTCTCGAAAAGTACATTTC
CTGTATACCCATTTATTTCATTTGAGAACCATCTCTTTAATCGAT
Found at i:506942 original size:17 final size:17
Alignment explanation
Indices: 506885--507010 Score: 162
Period size: 18 Copynumber: 7.2 Consensus size: 17
506875 TCTTTCCTAA
* *
506885 TCCGTTGTTGACTATCTT
1 TCCGTTGTTGATTAGC-T
* *
506903 TCCGTTGTTGACTATCTT
1 TCCGTTGTTGATTAGC-T
506921 TCCGTTGTTGATTAGCT
1 TCCGTTGTTGATTAGCT
506938 TCCGTTGTTGATTAGCT
1 TCCGTTGTTGATTAGCT
506955 TCCGTTGTTGATTAGCT
1 TCCGTTGTTGATTAGCT
**
506972 TCCTGTTGTTGATGCCGCT
1 TCC-GTTGTTGAT-TAGCT
506991 TCCGTTGTTGATTAGCT
1 TCCGTTGTTGATTAGCT
507008 TCC
1 TCC
507011 TGTTATGTTA
Statistics
Matches: 100, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
17 44 0.44
18 50 0.50
19 6 0.06
ACGTcount: A:0.10, C:0.21, G:0.21, T:0.47
Consensus pattern (17 bp):
TCCGTTGTTGATTAGCT
Left flanking sequence: Indices 506385 -- 506884
TCTTTTCTCCTCTAATCAGGAACTCGAGAATAGAGAACTAATTTGTCCTCTATCTAATCAGGAAC
TCAAGAATAGAACTAAACGGATAGCTTTCGTTACTAATAGAAACGGCGCTTACGCTTACTACCCA
TTTCCGGCACCACCATGTGGACTAAGTATTTTAACTACCGGCGTGCTTAGTAAACTCGCTAGAGA
AGTAATATGTTTTCTGCTTGCTCTAACGTACAACTAGAGAAGTAATATGTTTTCTGCTTGCTCTA
ACGTACAACTAGAGAACTATTTCTATAAGTTGATAGACTCTGTAAGAAACGAATATATGCATTAT
CCATCTATCTGTTAGATTTTTGAGTTATACGCTAACTCAGTATTACCATATAATATATCCACCTT
AACCTTAGTTGATTGACTTAGCTGAGAAACTGGCGGAACTACCTGCCATTAGAACTCAGTTTACT
ACAAGGAAAAGACAACAAACCTTCCGGGAGTACTATCTTTCCTAA
Right flanking sequence: Indices 507011 -- 507510
TGTTATGTTAATGTTAGCTACGGGTATTGATATTGGTATTCTCAATCGCCTACGCTGGCGGCTAG
CTGACAGTTAGTTACCTGTCTGTCTCGAAAAGTACATTTCCTGTATACCCATTTATTTCATTTGA
GAACCATCTCTTTAATCGATATGGAGTATTTTCACGGGCAGTGGAGAGCACCTTGCGGATGTTTG
TTTGCCTATTGATATAGTGGCTTAAACCTGATCATGGACAAATACCAACTTCTGATATCTATACC
TCAGGACTTCGTACCAGTTGTTGATCTAGGAATCTAACAACCTATAGAAATCTCATTCAACTTTG
CTTATCCGCTTTCGTTATTAATATTAATAGAATTCTCATTCAACTTTGCTTATCCGCTTTCGTTA
TTAATAGAAATCTCATTCAACTTATCCGCTTTCTAGATTAGATTAATAGATACTATCTATCACCG
GACTAAGATAAGAGAAAACCAACCATTAGGATTAGGAAAACCGCA
Found at i:506961 original size:14 final size:15
Alignment explanation
Indices: 506926--506979 Score: 72
Period size: 17 Copynumber: 3.3 Consensus size: 15
506916 ATCTTTCCGT
506926 TGTTGATTAGCTTCC
1 TGTTGATTAGCTTCC
506941 GTTGTTGATTAGCTTCC
1 --TGTTGATTAGCTTCC
506958 GTTGTTGATTAGCTTCC
1 --TGTTGATTAGCTTCC
506975 TGTTG
1 TGTTG
506980 TTGATGCCGC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.14
17 32 0.86
ACGTcount: A:0.11, C:0.17, G:0.24, T:0.48
Consensus pattern (15 bp):
TGTTGATTAGCTTCC
Left flanking sequence: Indices 506426 -- 506925
TTTGTCCTCTATCTAATCAGGAACTCAAGAATAGAACTAAACGGATAGCTTTCGTTACTAATAGA
AACGGCGCTTACGCTTACTACCCATTTCCGGCACCACCATGTGGACTAAGTATTTTAACTACCGG
CGTGCTTAGTAAACTCGCTAGAGAAGTAATATGTTTTCTGCTTGCTCTAACGTACAACTAGAGAA
GTAATATGTTTTCTGCTTGCTCTAACGTACAACTAGAGAACTATTTCTATAAGTTGATAGACTCT
GTAAGAAACGAATATATGCATTATCCATCTATCTGTTAGATTTTTGAGTTATACGCTAACTCAGT
ATTACCATATAATATATCCACCTTAACCTTAGTTGATTGACTTAGCTGAGAAACTGGCGGAACTA
CCTGCCATTAGAACTCAGTTTACTACAAGGAAAAGACAACAAACCTTCCGGGAGTACTATCTTTC
CTAATCCGTTGTTGACTATCTTTCCGTTGTTGACTATCTTTCCGT
Right flanking sequence: Indices 506980 -- 507479
TTGATGCCGCTTCCGTTGTTGATTAGCTTCCTGTTATGTTAATGTTAGCTACGGGTATTGATATT
GGTATTCTCAATCGCCTACGCTGGCGGCTAGCTGACAGTTAGTTACCTGTCTGTCTCGAAAAGTA
CATTTCCTGTATACCCATTTATTTCATTTGAGAACCATCTCTTTAATCGATATGGAGTATTTTCA
CGGGCAGTGGAGAGCACCTTGCGGATGTTTGTTTGCCTATTGATATAGTGGCTTAAACCTGATCA
TGGACAAATACCAACTTCTGATATCTATACCTCAGGACTTCGTACCAGTTGTTGATCTAGGAATC
TAACAACCTATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCGTTATTAATATTAATAGAATT
CTCATTCAACTTTGCTTATCCGCTTTCGTTATTAATAGAAATCTCATTCAACTTATCCGCTTTCT
AGATTAGATTAATAGATACTATCTATCACCGGACTAAGATAAGAG
Found at i:507385 original size:48 final size:48
Alignment explanation
Indices: 507314--507406 Score: 177
Period size: 48 Copynumber: 1.9 Consensus size: 48
507304 CTAACAACCT
507314 ATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCGTTATTAATATTA
1 ATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCGTTATTAATATTA
*
507362 ATAGAATTCTCATTCAACTTTGCTTATCCGCTTTCGTTATTAATA
1 ATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCGTTATTAATA
507407 GAAATCTCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (48 bp):
ATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCGTTATTAATATTA
Left flanking sequence: Indices 506814 -- 507313
TACCTGCCATTAGAACTCAGTTTACTACAAGGAAAAGACAACAAACCTTCCGGGAGTACTATCTT
TCCTAATCCGTTGTTGACTATCTTTCCGTTGTTGACTATCTTTCCGTTGTTGATTAGCTTCCGTT
GTTGATTAGCTTCCGTTGTTGATTAGCTTCCTGTTGTTGATGCCGCTTCCGTTGTTGATTAGCTT
CCTGTTATGTTAATGTTAGCTACGGGTATTGATATTGGTATTCTCAATCGCCTACGCTGGCGGCT
AGCTGACAGTTAGTTACCTGTCTGTCTCGAAAAGTACATTTCCTGTATACCCATTTATTTCATTT
GAGAACCATCTCTTTAATCGATATGGAGTATTTTCACGGGCAGTGGAGAGCACCTTGCGGATGTT
TGTTTGCCTATTGATATAGTGGCTTAAACCTGATCATGGACAAATACCAACTTCTGATATCTATA
CCTCAGGACTTCGTACCAGTTGTTGATCTAGGAATCTAACAACCT
Right flanking sequence: Indices 507407 -- 507906
GAAATCTCATTCAACTTATCCGCTTTCTAGATTAGATTAATAGATACTATCTATCACCGGACTAA
GATAAGAGAAAACCAACCATTAGGATTAGGAAAACCGCATGATGGACTTAGACTTAGCAAAACGA
ATTAATATAAAATCTCCCCTGAAAAACGGACTAGTTAACATATGGACATGGACTAAGCGTTGTAA
ATACCCTTTTCCAACGAAAGAAACTCAAACTCCCTAAGAGAGGACGAGTACCTCTTATCTATCTA
TCTTAGGATAAACACCCAATATGCACTATATCCATATCCATTAACTACAGGATATTTCTATTTCT
ATTTCTATTGATTGACTAGTCGACTTCCCATGGATTATAACTATCACAAACTCCATCCAACCTCT
AACTAGCGGCAAGAACTAAACTCTATAACGTATAACTACGGAACAAAGCAAAGGGACTAACTGAT
ATTAGCTATATTATATCCATTATCTATCTATCTATTAGAGAAAGA
Found at i:507416 original size:42 final size:44
Alignment explanation
Indices: 507314--507423 Score: 161
Period size: 48 Copynumber: 2.5 Consensus size: 44
507304 CTAACAACCT
507314 ATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCGTTATTAATATTA
1 ATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCG---TT-ATATTA
*
507362 ATAGAATTCTCATTCAACTTTGCTTATCCGCTTTCG-T-TATTA
1 ATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCGTTATATTA
507404 ATAGAAATCTCATTCAACTT
1 ATAGAAATCTCATTCAACTT
507424 ATCCGCTTTC
Statistics
Matches: 60, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
42 24 0.40
44 1 0.02
48 35 0.58
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (44 bp):
ATAGAAATCTCATTCAACTTTGCTTATCCGCTTTCGTTATATTA
Left flanking sequence: Indices 506814 -- 507313
TACCTGCCATTAGAACTCAGTTTACTACAAGGAAAAGACAACAAACCTTCCGGGAGTACTATCTT
TCCTAATCCGTTGTTGACTATCTTTCCGTTGTTGACTATCTTTCCGTTGTTGATTAGCTTCCGTT
GTTGATTAGCTTCCGTTGTTGATTAGCTTCCTGTTGTTGATGCCGCTTCCGTTGTTGATTAGCTT
CCTGTTATGTTAATGTTAGCTACGGGTATTGATATTGGTATTCTCAATCGCCTACGCTGGCGGCT
AGCTGACAGTTAGTTACCTGTCTGTCTCGAAAAGTACATTTCCTGTATACCCATTTATTTCATTT
GAGAACCATCTCTTTAATCGATATGGAGTATTTTCACGGGCAGTGGAGAGCACCTTGCGGATGTT
TGTTTGCCTATTGATATAGTGGCTTAAACCTGATCATGGACAAATACCAACTTCTGATATCTATA
CCTCAGGACTTCGTACCAGTTGTTGATCTAGGAATCTAACAACCT
Right flanking sequence: Indices 507424 -- 507923
ATCCGCTTTCTAGATTAGATTAATAGATACTATCTATCACCGGACTAAGATAAGAGAAAACCAAC
CATTAGGATTAGGAAAACCGCATGATGGACTTAGACTTAGCAAAACGAATTAATATAAAATCTCC
CCTGAAAAACGGACTAGTTAACATATGGACATGGACTAAGCGTTGTAAATACCCTTTTCCAACGA
AAGAAACTCAAACTCCCTAAGAGAGGACGAGTACCTCTTATCTATCTATCTTAGGATAAACACCC
AATATGCACTATATCCATATCCATTAACTACAGGATATTTCTATTTCTATTTCTATTGATTGACT
AGTCGACTTCCCATGGATTATAACTATCACAAACTCCATCCAACCTCTAACTAGCGGCAAGAACT
AAACTCTATAACGTATAACTACGGAACAAAGCAAAGGGACTAACTGATATTAGCTATATTATATC
CATTATCTATCTATCTATTAGAGAAAGATCAAATAAGGAGCTATA
Found at i:509118 original size:29 final size:29
Alignment explanation
Indices: 509076--509132 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
509066 ACGAAGGAAC
509076 AAAGTATACAAGTTGGTAGATTACAGAAT
1 AAAGTATACAAGTTGGTAGATTACAGAAT
509105 AAAGTATACAAGTTGGTAGATTACAGAA
1 AAAGTATACAAGTTGGTAGATTACAGAA
509133 CTCATGAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (29 bp):
AAAGTATACAAGTTGGTAGATTACAGAAT
Left flanking sequence: Indices 508576 -- 509075
AAATACAGTCCTTAACACCTAAGAAAAATCGAAGGTAAGGAAAACTCTCCCTCTTCCCCATGGTT
GAGCACTTGTTACCTCTTCCTCTTCCTCTTCTTTCAGTCTTATCTTAAATAAATAAATTGCTGAA
TCCTAGCGTCAAGAAATCAATCTATTAGCTCCTATCCTAATAACTCAGTATTACCAAAGCAAAGT
ATAGAGCCATTACCTTAACTAACCAAAGGGCGCTCACTCATTAGCATTAGCATTAGCTACAACTA
CTGTATTTTGTAGAACTACTGTTCACAACTAACTGGCGCACCCTGTGTTCCTCTCTTTCCTTAGT
ACAACGAAACTACCCATTACCTAAGTATTTTAACAAACTATCGGCGAGAACTAAACGACTTAGAA
ACCAACTACTTATACTTAGAAACAAACTATCGGCGAGAACTAAACCCTATAACTCCCATTAGAAA
CTAACTATCTAGAGAACTAAACTCGCAAACTCCCAACGAAGGAAC
Right flanking sequence: Indices 509133 -- 509632
CTCATGAACTAACTGATATGGACTATATGAGGCTCTATACCCGAAACTTACTTAGTATTGCCGTA
TATCCACTGCCTTATAAGCAAAAAACGGAGGTAATGAATGCTAGCTAGTAGGTACTGATTTCTAG
ATAGTAGTTACTGACTGAGTTTCTAGGTTGTAGCGTACTGAGTTCGCTCCTGGCACTTTTGTCAC
GAAGGTTAAGACTTACAGGTAAGAGTTAATTCATTTATCAGAAAGAGGTAATGAATTTATCGGAA
ACGAGGTAATTATTCATTTATCTTATCTCCCAGAGGTAACTCCTTAGTATTAGCTATCACTTACT
TTGTTGACCAATGACCAACCAACCATATGTATTTATGAACCATATGTATTTATGAACCATATGTA
TTTATGAACCGTATGTATTTCACAACCGTATGTAATCCTATCTTAGTTAGCTACATTTGCTTTCG
TTTCTACTTTCGTTTCTACTTTCCTTGCTACTTTCCTAGTTAGAA
Found at i:509374 original size:22 final size:22
Alignment explanation
Indices: 509348--509404 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
509338 ACTTACAGGT
* *
509348 AAGAGTTAATTCATTTATCAGA
1 AAGAGGTAATTAATTTATCAGA
* *
509370 AAGAGGTAATGAATTTATCGGA
1 AAGAGGTAATTAATTTATCAGA
509392 AACGAGGTAATTA
1 AA-GAGGTAATTA
509405 TTCATTTATC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 20 0.69
23 9 0.31
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (22 bp):
AAGAGGTAATTAATTTATCAGA
Left flanking sequence: Indices 508848 -- 509347
GAACTACTGTTCACAACTAACTGGCGCACCCTGTGTTCCTCTCTTTCCTTAGTACAACGAAACTA
CCCATTACCTAAGTATTTTAACAAACTATCGGCGAGAACTAAACGACTTAGAAACCAACTACTTA
TACTTAGAAACAAACTATCGGCGAGAACTAAACCCTATAACTCCCATTAGAAACTAACTATCTAG
AGAACTAAACTCGCAAACTCCCAACGAAGGAACAAAGTATACAAGTTGGTAGATTACAGAATAAA
GTATACAAGTTGGTAGATTACAGAACTCATGAACTAACTGATATGGACTATATGAGGCTCTATAC
CCGAAACTTACTTAGTATTGCCGTATATCCACTGCCTTATAAGCAAAAAACGGAGGTAATGAATG
CTAGCTAGTAGGTACTGATTTCTAGATAGTAGTTACTGACTGAGTTTCTAGGTTGTAGCGTACTG
AGTTCGCTCCTGGCACTTTTGTCACGAAGGTTAAGACTTACAGGT
Right flanking sequence: Indices 509405 -- 509904
TTCATTTATCTTATCTCCCAGAGGTAACTCCTTAGTATTAGCTATCACTTACTTTGTTGACCAAT
GACCAACCAACCATATGTATTTATGAACCATATGTATTTATGAACCATATGTATTTATGAACCGT
ATGTATTTCACAACCGTATGTAATCCTATCTTAGTTAGCTACATTTGCTTTCGTTTCTACTTTCG
TTTCTACTTTCCTTGCTACTTTCCTAGTTAGAAACTACCCATTCATTTTCATTACCTAAGTATTT
ATTTTAACAAACTAGTGGTTATTCACTAGCCGACAAAGAAAAGAAATCACTAGCTGAGCGAGAAC
TACATTCATTAGCCATCTATCTATACTAGTTGATTTCCTATTACCTAGAACAGAAATCTATGAAT
CATTCATTAATTACCATAGTATATATTCTATCTAAACCCAACGCAACGAAACAACAACAAACAAC
CTGGCTAGAGAACTAGAACTAAACCTGCAAACAACAACAAACAAC
Found at i:509555 original size:34 final size:34
Alignment explanation
Indices: 509477--509556 Score: 117
Period size: 34 Copynumber: 2.4 Consensus size: 34
509467 AATGACCAAC
509477 CAACCATATGTATTTATGAACCATATGTATTTAT
1 CAACCATATGTATTTATGAACCATATGTATTTAT
* *
509511 GAACCATATGTATTTATGAACCGTATGTATTTCA-
1 CAACCATATGTATTTATGAACCATATGTATTT-AT
*
509545 CAACCGTATGTA
1 CAACCATATGTA
509557 ATCCTATCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 40 0.98
35 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (34 bp):
CAACCATATGTATTTATGAACCATATGTATTTAT
Left flanking sequence: Indices 508977 -- 509476
ATACTTAGAAACAAACTATCGGCGAGAACTAAACCCTATAACTCCCATTAGAAACTAACTATCTA
GAGAACTAAACTCGCAAACTCCCAACGAAGGAACAAAGTATACAAGTTGGTAGATTACAGAATAA
AGTATACAAGTTGGTAGATTACAGAACTCATGAACTAACTGATATGGACTATATGAGGCTCTATA
CCCGAAACTTACTTAGTATTGCCGTATATCCACTGCCTTATAAGCAAAAAACGGAGGTAATGAAT
GCTAGCTAGTAGGTACTGATTTCTAGATAGTAGTTACTGACTGAGTTTCTAGGTTGTAGCGTACT
GAGTTCGCTCCTGGCACTTTTGTCACGAAGGTTAAGACTTACAGGTAAGAGTTAATTCATTTATC
AGAAAGAGGTAATGAATTTATCGGAAACGAGGTAATTATTCATTTATCTTATCTCCCAGAGGTAA
CTCCTTAGTATTAGCTATCACTTACTTTGTTGACCAATGACCAAC
Right flanking sequence: Indices 509557 -- 510056
ATCCTATCTTAGTTAGCTACATTTGCTTTCGTTTCTACTTTCGTTTCTACTTTCCTTGCTACTTT
CCTAGTTAGAAACTACCCATTCATTTTCATTACCTAAGTATTTATTTTAACAAACTAGTGGTTAT
TCACTAGCCGACAAAGAAAAGAAATCACTAGCTGAGCGAGAACTACATTCATTAGCCATCTATCT
ATACTAGTTGATTTCCTATTACCTAGAACAGAAATCTATGAATCATTCATTAATTACCATAGTAT
ATATTCTATCTAAACCCAACGCAACGAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAA
ACCTGCAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCCTATAACTACTAATTCA
GGAACAAAGAAAGGAATGAACTCAGGAACGTAAAGTATATAAGTTTCTAGACTCCAGAACGTAAA
GTCGTGTAGTTGATAGACTCTGAAACAAATAAAGGAAAGGAACTT
Found at i:509556 original size:17 final size:17
Alignment explanation
Indices: 509478--509542 Score: 121
Period size: 17 Copynumber: 3.8 Consensus size: 17
509468 ATGACCAACC
509478 AACCATATGTATTTATG
1 AACCATATGTATTTATG
509495 AACCATATGTATTTATG
1 AACCATATGTATTTATG
509512 AACCATATGTATTTATG
1 AACCATATGTATTTATG
*
509529 AACCGTATGTATTT
1 AACCATATGTATTT
509543 CACAACCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 47 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (17 bp):
AACCATATGTATTTATG
Left flanking sequence: Indices 508978 -- 509477
TACTTAGAAACAAACTATCGGCGAGAACTAAACCCTATAACTCCCATTAGAAACTAACTATCTAG
AGAACTAAACTCGCAAACTCCCAACGAAGGAACAAAGTATACAAGTTGGTAGATTACAGAATAAA
GTATACAAGTTGGTAGATTACAGAACTCATGAACTAACTGATATGGACTATATGAGGCTCTATAC
CCGAAACTTACTTAGTATTGCCGTATATCCACTGCCTTATAAGCAAAAAACGGAGGTAATGAATG
CTAGCTAGTAGGTACTGATTTCTAGATAGTAGTTACTGACTGAGTTTCTAGGTTGTAGCGTACTG
AGTTCGCTCCTGGCACTTTTGTCACGAAGGTTAAGACTTACAGGTAAGAGTTAATTCATTTATCA
GAAAGAGGTAATGAATTTATCGGAAACGAGGTAATTATTCATTTATCTTATCTCCCAGAGGTAAC
TCCTTAGTATTAGCTATCACTTACTTTGTTGACCAATGACCAACC
Right flanking sequence: Indices 509543 -- 510042
CACAACCGTATGTAATCCTATCTTAGTTAGCTACATTTGCTTTCGTTTCTACTTTCGTTTCTACT
TTCCTTGCTACTTTCCTAGTTAGAAACTACCCATTCATTTTCATTACCTAAGTATTTATTTTAAC
AAACTAGTGGTTATTCACTAGCCGACAAAGAAAAGAAATCACTAGCTGAGCGAGAACTACATTCA
TTAGCCATCTATCTATACTAGTTGATTTCCTATTACCTAGAACAGAAATCTATGAATCATTCATT
AATTACCATAGTATATATTCTATCTAAACCCAACGCAACGAAACAACAACAAACAACCTGGCTAG
AGAACTAGAACTAAACCTGCAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCCTA
TAACTACTAATTCAGGAACAAAGAAAGGAATGAACTCAGGAACGTAAAGTATATAAGTTTCTAGA
CTCCAGAACGTAAAGTCGTGTAGTTGATAGACTCTGAAACAAATA
Found at i:509599 original size:12 final size:12
Alignment explanation
Indices: 509582--509622 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
509572 GCTACATTTG
509582 CTTTCGTTTCTA
1 CTTTCGTTTCTA
509594 CTTTCGTTTCTA
1 CTTTCGTTTCTA
* *
509606 CTTTCCTTGCTA
1 CTTTCGTTTCTA
509618 CTTTC
1 CTTTC
509623 CTAGTTAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.07, C:0.29, G:0.07, T:0.56
Consensus pattern (12 bp):
CTTTCGTTTCTA
Left flanking sequence: Indices 509082 -- 509581
TACAAGTTGGTAGATTACAGAATAAAGTATACAAGTTGGTAGATTACAGAACTCATGAACTAACT
GATATGGACTATATGAGGCTCTATACCCGAAACTTACTTAGTATTGCCGTATATCCACTGCCTTA
TAAGCAAAAAACGGAGGTAATGAATGCTAGCTAGTAGGTACTGATTTCTAGATAGTAGTTACTGA
CTGAGTTTCTAGGTTGTAGCGTACTGAGTTCGCTCCTGGCACTTTTGTCACGAAGGTTAAGACTT
ACAGGTAAGAGTTAATTCATTTATCAGAAAGAGGTAATGAATTTATCGGAAACGAGGTAATTATT
CATTTATCTTATCTCCCAGAGGTAACTCCTTAGTATTAGCTATCACTTACTTTGTTGACCAATGA
CCAACCAACCATATGTATTTATGAACCATATGTATTTATGAACCATATGTATTTATGAACCGTAT
GTATTTCACAACCGTATGTAATCCTATCTTAGTTAGCTACATTTG
Right flanking sequence: Indices 509623 -- 510122
CTAGTTAGAAACTACCCATTCATTTTCATTACCTAAGTATTTATTTTAACAAACTAGTGGTTATT
CACTAGCCGACAAAGAAAAGAAATCACTAGCTGAGCGAGAACTACATTCATTAGCCATCTATCTA
TACTAGTTGATTTCCTATTACCTAGAACAGAAATCTATGAATCATTCATTAATTACCATAGTATA
TATTCTATCTAAACCCAACGCAACGAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAA
CCTGCAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCCTATAACTACTAATTCAG
GAACAAAGAAAGGAATGAACTCAGGAACGTAAAGTATATAAGTTTCTAGACTCCAGAACGTAAAG
TCGTGTAGTTGATAGACTCTGAAACAAATAAAGGAAAGGAACTTACTCACATATGGACTAGATCA
ATACATTTGAAACCAGGAAAGACCTACTATACCCTCATAGAAAAG
Found at i:509907 original size:45 final size:45
Alignment explanation
Indices: 509843--509929 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
509833 CAACGCAACG
509843 AAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCTGC
1 AAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCTGC
509888 AAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACC
1 AAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACC
509930 CTATAACTAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.51, C:0.26, G:0.13, T:0.10
Consensus pattern (45 bp):
AAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCTGC
Left flanking sequence: Indices 509343 -- 509842
CAGGTAAGAGTTAATTCATTTATCAGAAAGAGGTAATGAATTTATCGGAAACGAGGTAATTATTC
ATTTATCTTATCTCCCAGAGGTAACTCCTTAGTATTAGCTATCACTTACTTTGTTGACCAATGAC
CAACCAACCATATGTATTTATGAACCATATGTATTTATGAACCATATGTATTTATGAACCGTATG
TATTTCACAACCGTATGTAATCCTATCTTAGTTAGCTACATTTGCTTTCGTTTCTACTTTCGTTT
CTACTTTCCTTGCTACTTTCCTAGTTAGAAACTACCCATTCATTTTCATTACCTAAGTATTTATT
TTAACAAACTAGTGGTTATTCACTAGCCGACAAAGAAAAGAAATCACTAGCTGAGCGAGAACTAC
ATTCATTAGCCATCTATCTATACTAGTTGATTTCCTATTACCTAGAACAGAAATCTATGAATCAT
TCATTAATTACCATAGTATATATTCTATCTAAACCCAACGCAACG
Right flanking sequence: Indices 509930 -- 510429
CTATAACTACTAATTCAGGAACAAAGAAAGGAATGAACTCAGGAACGTAAAGTATATAAGTTTCT
AGACTCCAGAACGTAAAGTCGTGTAGTTGATAGACTCTGAAACAAATAAAGGAAAGGAACTTACT
CACATATGGACTAGATCAATACATTTGAAACCAGGAAAGACCTACTATACCCTCATAGAAAAGAA
AGACCTATATTCTACTCTTCCTCTATACTCATTCATTAGCTACAAACAAAACAACTTGCTTACCT
ATTCCTATTATCATTTATTACCATACCTACCATCTATTGCCGCTTTAGCTACTATCAACTATCCG
TCTGATCTATCTAACTGTCCATCTTCTGATCTATGTAACTGTCCATCTGATCTATGTAACTCCCT
ATCTATACCTATACTAGAAACGTACTATACTAGCTGGCATTATCACTAAGTTGCCTAGCTGCTTT
CCAATTCCAAGGAAAAGTGCCAGTGCCAGAAACCCCTAGTCTTAT
Found at i:510282 original size:24 final size:24
Alignment explanation
Indices: 510255--510302 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
510245 CAACTATCCG
510255 TCTGATCTATCTAACTGTCCATCT
1 TCTGATCTATCTAACTGTCCATCT
*
510279 TCTGATCTATGTAACTGTCCATCT
1 TCTGATCTATCTAACTGTCCATCT
510303 GATCTATGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.27, G:0.10, T:0.42
Consensus pattern (24 bp):
TCTGATCTATCTAACTGTCCATCT
Left flanking sequence: Indices 509755 -- 510254
CTAGTTGATTTCCTATTACCTAGAACAGAAATCTATGAATCATTCATTAATTACCATAGTATATA
TTCTATCTAAACCCAACGCAACGAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACC
TGCAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCCTATAACTACTAATTCAGGA
ACAAAGAAAGGAATGAACTCAGGAACGTAAAGTATATAAGTTTCTAGACTCCAGAACGTAAAGTC
GTGTAGTTGATAGACTCTGAAACAAATAAAGGAAAGGAACTTACTCACATATGGACTAGATCAAT
ACATTTGAAACCAGGAAAGACCTACTATACCCTCATAGAAAAGAAAGACCTATATTCTACTCTTC
CTCTATACTCATTCATTAGCTACAAACAAAACAACTTGCTTACCTATTCCTATTATCATTTATTA
CCATACCTACCATCTATTGCCGCTTTAGCTACTATCAACTATCCG
Right flanking sequence: Indices 510303 -- 510802
GATCTATGTAACTCCCTATCTATACCTATACTAGAAACGTACTATACTAGCTGGCATTATCACTA
AGTTGCCTAGCTGCTTTCCAATTCCAAGGAAAAGTGCCAGTGCCAGAAACCCCTAGTCTTATCTT
ATCTTTCGTAACTATCTAGTAACCTCACCTACTGAGAAACTTTCCTACTGATAAACTTTCCTACT
GAGAAACTAACTATCTAGTAAACTCACCTACTGAGAAATTAACCATGTAATTACTTAAGCCTGGG
AGTTGGATAGTCAAAAGCGAAAACTGTAGCTTTCTATTCCCTCATCCAGAGATATGAATAACCAA
CCTCTGTAAGCCGTCGAGTGACTTCGTCCCTTGGACTATGGTCGAGTCAAAAGAGCCTCATCCAG
AGATACTCATAACCTCTCCTTCACAGTCGAGCACTTTGTGCCTTGGAGGCACAGTCAACACTTTG
TGCCTCTCCCGCAGGTCGAGTCAAAAGGGCCTTGGGAATAGATAT
Found at i:510305 original size:21 final size:21
Alignment explanation
Indices: 510246--510315 Score: 86
Period size: 21 Copynumber: 3.2 Consensus size: 21
510236 AGCTACTATC
* * *
510246 AACTATCCGTCTGATCTATCT
1 AACTGTCCATCTGATCTATGT
510267 AACTGTCCATCTTCTGATCTATGT
1 AACTGTCCA---TCTGATCTATGT
510291 AACTGTCCATCTGATCTATGT
1 AACTGTCCATCTGATCTATGT
510312 AACT
1 AACT
510316 CCCTATCTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
21 23 0.53
24 20 0.47
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (21 bp):
AACTGTCCATCTGATCTATGT
Left flanking sequence: Indices 509746 -- 510245
CTATCTATACTAGTTGATTTCCTATTACCTAGAACAGAAATCTATGAATCATTCATTAATTACCA
TAGTATATATTCTATCTAAACCCAACGCAACGAAACAACAACAAACAACCTGGCTAGAGAACTAG
AACTAAACCTGCAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCCTATAACTACT
AATTCAGGAACAAAGAAAGGAATGAACTCAGGAACGTAAAGTATATAAGTTTCTAGACTCCAGAA
CGTAAAGTCGTGTAGTTGATAGACTCTGAAACAAATAAAGGAAAGGAACTTACTCACATATGGAC
TAGATCAATACATTTGAAACCAGGAAAGACCTACTATACCCTCATAGAAAAGAAAGACCTATATT
CTACTCTTCCTCTATACTCATTCATTAGCTACAAACAAAACAACTTGCTTACCTATTCCTATTAT
CATTTATTACCATACCTACCATCTATTGCCGCTTTAGCTACTATC
Right flanking sequence: Indices 510316 -- 510815
CCCTATCTATACCTATACTAGAAACGTACTATACTAGCTGGCATTATCACTAAGTTGCCTAGCTG
CTTTCCAATTCCAAGGAAAAGTGCCAGTGCCAGAAACCCCTAGTCTTATCTTATCTTTCGTAACT
ATCTAGTAACCTCACCTACTGAGAAACTTTCCTACTGATAAACTTTCCTACTGAGAAACTAACTA
TCTAGTAAACTCACCTACTGAGAAATTAACCATGTAATTACTTAAGCCTGGGAGTTGGATAGTCA
AAAGCGAAAACTGTAGCTTTCTATTCCCTCATCCAGAGATATGAATAACCAACCTCTGTAAGCCG
TCGAGTGACTTCGTCCCTTGGACTATGGTCGAGTCAAAAGAGCCTCATCCAGAGATACTCATAAC
CTCTCCTTCACAGTCGAGCACTTTGTGCCTTGGAGGCACAGTCAACACTTTGTGCCTCTCCCGCA
GGTCGAGTCAAAAGGGCCTTGGGAATAGATATGAATAACCCCAGG
Found at i:510323 original size:21 final size:21
Alignment explanation
Indices: 510255--510323 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 21
510245 CAACTATCCG
* *
510255 TCTGATCTATCTAACTGTCCATCT
1 TCTGATCTATGTAACTG-CC--CA
*
510279 TCTGATCTATGTAACTGTCCA
1 TCTGATCTATGTAACTGCCCA
510300 TCTGATCTATGTAACT-CCCTA
1 TCTGATCTATGTAACTGCCC-A
510321 TCT
1 TCT
510324 ATACCTATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
20 2 0.05
21 21 0.52
23 1 0.03
24 16 0.40
ACGTcount: A:0.22, C:0.28, G:0.10, T:0.41
Consensus pattern (21 bp):
TCTGATCTATGTAACTGCCCA
Left flanking sequence: Indices 509755 -- 510254
CTAGTTGATTTCCTATTACCTAGAACAGAAATCTATGAATCATTCATTAATTACCATAGTATATA
TTCTATCTAAACCCAACGCAACGAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACC
TGCAAACAACAACAAACAACCTGGCTAGAGAACTAGAACTAAACCCTATAACTACTAATTCAGGA
ACAAAGAAAGGAATGAACTCAGGAACGTAAAGTATATAAGTTTCTAGACTCCAGAACGTAAAGTC
GTGTAGTTGATAGACTCTGAAACAAATAAAGGAAAGGAACTTACTCACATATGGACTAGATCAAT
ACATTTGAAACCAGGAAAGACCTACTATACCCTCATAGAAAAGAAAGACCTATATTCTACTCTTC
CTCTATACTCATTCATTAGCTACAAACAAAACAACTTGCTTACCTATTCCTATTATCATTTATTA
CCATACCTACCATCTATTGCCGCTTTAGCTACTATCAACTATCCG
Right flanking sequence: Indices 510324 -- 510823
ATACCTATACTAGAAACGTACTATACTAGCTGGCATTATCACTAAGTTGCCTAGCTGCTTTCCAA
TTCCAAGGAAAAGTGCCAGTGCCAGAAACCCCTAGTCTTATCTTATCTTTCGTAACTATCTAGTA
ACCTCACCTACTGAGAAACTTTCCTACTGATAAACTTTCCTACTGAGAAACTAACTATCTAGTAA
ACTCACCTACTGAGAAATTAACCATGTAATTACTTAAGCCTGGGAGTTGGATAGTCAAAAGCGAA
AACTGTAGCTTTCTATTCCCTCATCCAGAGATATGAATAACCAACCTCTGTAAGCCGTCGAGTGA
CTTCGTCCCTTGGACTATGGTCGAGTCAAAAGAGCCTCATCCAGAGATACTCATAACCTCTCCTT
CACAGTCGAGCACTTTGTGCCTTGGAGGCACAGTCAACACTTTGTGCCTCTCCCGCAGGTCGAGT
CAAAAGGGCCTTGGGAATAGATATGAATAACCCCAGGAAGAGATA
Found at i:510481 original size:16 final size:16
Alignment explanation
Indices: 510460--510505 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
510450 AGTAACCTCA
510460 CCTACTGAGAAACTTT
1 CCTACTGAGAAACTTT
*
510476 CCTACTGATAAACTTT
1 CCTACTGAGAAACTTT
510492 CCTACTGAGAAACT
1 CCTACTGAGAAACT
510506 AACTATCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (16 bp):
CCTACTGAGAAACTTT
Left flanking sequence: Indices 509960 -- 510459
GAATGAACTCAGGAACGTAAAGTATATAAGTTTCTAGACTCCAGAACGTAAAGTCGTGTAGTTGA
TAGACTCTGAAACAAATAAAGGAAAGGAACTTACTCACATATGGACTAGATCAATACATTTGAAA
CCAGGAAAGACCTACTATACCCTCATAGAAAAGAAAGACCTATATTCTACTCTTCCTCTATACTC
ATTCATTAGCTACAAACAAAACAACTTGCTTACCTATTCCTATTATCATTTATTACCATACCTAC
CATCTATTGCCGCTTTAGCTACTATCAACTATCCGTCTGATCTATCTAACTGTCCATCTTCTGAT
CTATGTAACTGTCCATCTGATCTATGTAACTCCCTATCTATACCTATACTAGAAACGTACTATAC
TAGCTGGCATTATCACTAAGTTGCCTAGCTGCTTTCCAATTCCAAGGAAAAGTGCCAGTGCCAGA
AACCCCTAGTCTTATCTTATCTTTCGTAACTATCTAGTAACCTCA
Right flanking sequence: Indices 510506 -- 511005
AACTATCTAGTAAACTCACCTACTGAGAAATTAACCATGTAATTACTTAAGCCTGGGAGTTGGAT
AGTCAAAAGCGAAAACTGTAGCTTTCTATTCCCTCATCCAGAGATATGAATAACCAACCTCTGTA
AGCCGTCGAGTGACTTCGTCCCTTGGACTATGGTCGAGTCAAAAGAGCCTCATCCAGAGATACTC
ATAACCTCTCCTTCACAGTCGAGCACTTTGTGCCTTGGAGGCACAGTCAACACTTTGTGCCTCTC
CCGCAGGTCGAGTCAAAAGGGCCTTGGGAATAGATATGAATAACCCCAGGAAGAGATACTCATAA
CCCCAGGAAGAGATACTCATAACTTCTCCCTATGATTGATTGAGTCCTTCGGGCCTCATCCAGAG
ATATGAACAGAGATATTCATAACCGACCTCCCTCATCCAGAGATATGAACGGAGATATTCATAAC
CGTGGGTGGTAAGTCTCGCATGCCTCTTCTTTTCTTTTCAGTCTC
Found at i:510520 original size:32 final size:32
Alignment explanation
Indices: 510441--510540 Score: 114
Period size: 32 Copynumber: 3.1 Consensus size: 32
510431 TTATCTTTCG
*
510441 TAACTATCTAGTAACCTCACCTACTGAGAAAC
1 TAACTATCTAGTAAACTCACCTACTGAGAAAC
** **
510473 TTTCCTA-CT-GATAAACTTTCCTACTGAGAAAC
1 -TAACTATCTAG-TAAACTCACCTACTGAGAAAC
*
510505 TAACTATCTAGTAAACTCACCTACTGAGAAAT
1 TAACTATCTAGTAAACTCACCTACTGAGAAAC
510537 TAAC
1 TAAC
510541 CATGTAATTA
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
31 5 0.09
32 44 0.81
33 5 0.09
ACGTcount: A:0.37, C:0.25, G:0.09, T:0.29
Consensus pattern (32 bp):
TAACTATCTAGTAAACTCACCTACTGAGAAAC
Left flanking sequence: Indices 509941 -- 510440
AATTCAGGAACAAAGAAAGGAATGAACTCAGGAACGTAAAGTATATAAGTTTCTAGACTCCAGAA
CGTAAAGTCGTGTAGTTGATAGACTCTGAAACAAATAAAGGAAAGGAACTTACTCACATATGGAC
TAGATCAATACATTTGAAACCAGGAAAGACCTACTATACCCTCATAGAAAAGAAAGACCTATATT
CTACTCTTCCTCTATACTCATTCATTAGCTACAAACAAAACAACTTGCTTACCTATTCCTATTAT
CATTTATTACCATACCTACCATCTATTGCCGCTTTAGCTACTATCAACTATCCGTCTGATCTATC
TAACTGTCCATCTTCTGATCTATGTAACTGTCCATCTGATCTATGTAACTCCCTATCTATACCTA
TACTAGAAACGTACTATACTAGCTGGCATTATCACTAAGTTGCCTAGCTGCTTTCCAATTCCAAG
GAAAAGTGCCAGTGCCAGAAACCCCTAGTCTTATCTTATCTTTCG
Right flanking sequence: Indices 510541 -- 511040
CATGTAATTACTTAAGCCTGGGAGTTGGATAGTCAAAAGCGAAAACTGTAGCTTTCTATTCCCTC
ATCCAGAGATATGAATAACCAACCTCTGTAAGCCGTCGAGTGACTTCGTCCCTTGGACTATGGTC
GAGTCAAAAGAGCCTCATCCAGAGATACTCATAACCTCTCCTTCACAGTCGAGCACTTTGTGCCT
TGGAGGCACAGTCAACACTTTGTGCCTCTCCCGCAGGTCGAGTCAAAAGGGCCTTGGGAATAGAT
ATGAATAACCCCAGGAAGAGATACTCATAACCCCAGGAAGAGATACTCATAACTTCTCCCTATGA
TTGATTGAGTCCTTCGGGCCTCATCCAGAGATATGAACAGAGATATTCATAACCGACCTCCCTCA
TCCAGAGATATGAACGGAGATATTCATAACCGTGGGTGGTAAGTCTCGCATGCCTCTTCTTTTCT
TTTCAGTCTCGAAATAAATACCTCTTCCTTCGTCGAGTCCTTCGG
Found at i:510822 original size:22 final size:22
Alignment explanation
Indices: 510804--510853 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
510794 AATAGATATG
510804 AATAACCCCAGGAAGAGATACT
1 AATAACCCCAGGAAGAGATACT
*
510826 CATAACCCCAGGAAGAGATACT
1 AATAACCCCAGGAAGAGATACT
*
510848 CATAAC
1 AATAAC
510854 TTCTCCCTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.44, C:0.26, G:0.16, T:0.14
Consensus pattern (22 bp):
AATAACCCCAGGAAGAGATACT
Left flanking sequence: Indices 510304 -- 510803
ATCTATGTAACTCCCTATCTATACCTATACTAGAAACGTACTATACTAGCTGGCATTATCACTAA
GTTGCCTAGCTGCTTTCCAATTCCAAGGAAAAGTGCCAGTGCCAGAAACCCCTAGTCTTATCTTA
TCTTTCGTAACTATCTAGTAACCTCACCTACTGAGAAACTTTCCTACTGATAAACTTTCCTACTG
AGAAACTAACTATCTAGTAAACTCACCTACTGAGAAATTAACCATGTAATTACTTAAGCCTGGGA
GTTGGATAGTCAAAAGCGAAAACTGTAGCTTTCTATTCCCTCATCCAGAGATATGAATAACCAAC
CTCTGTAAGCCGTCGAGTGACTTCGTCCCTTGGACTATGGTCGAGTCAAAAGAGCCTCATCCAGA
GATACTCATAACCTCTCCTTCACAGTCGAGCACTTTGTGCCTTGGAGGCACAGTCAACACTTTGT
GCCTCTCCCGCAGGTCGAGTCAAAAGGGCCTTGGGAATAGATATG
Right flanking sequence: Indices 510854 -- 511353
TTCTCCCTATGATTGATTGAGTCCTTCGGGCCTCATCCAGAGATATGAACAGAGATATTCATAAC
CGACCTCCCTCATCCAGAGATATGAACGGAGATATTCATAACCGTGGGTGGTAAGTCTCGCATGC
CTCTTCTTTTCTTTTCAGTCTCGAAATAAATACCTCTTCCTTCGTCGAGTCCTTCGGACCTTGGA
TTATGAGTCTAGGGCTCCGCGTATCTTCTCTTCTGGCACGTCGAGTATATAAATTTCTTCTTCTT
TCAGTCTCGTTAGAAACTCCCCTCGTTCCTCGTACCTCGTACCTCTGGCCCTTGGATTATTAGTT
GAGCCAAGAGGACAAATACTAATACTGGCAAGTCGAGAAATCAATTAGCGCTCCTTTATAGTTAT
AGTTATAGTCTCGCGCCTTGGATTATCAGTCGAGTATATCAATTTCCTCTTCCTTATCAGTCTCA
TGCTTCGCGCCTTGGATTATGAGTCAAGAAATCTATTACCTCTGG
Found at i:511689 original size:11 final size:11
Alignment explanation
Indices: 511673--511706 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
511663 TCTCCAGCTC
511673 TAGATTTGCAT
1 TAGATTTGCAT
511684 TAGATTTGCAT
1 TAGATTTGCAT
511695 TAGATTTGCAT
1 TAGATTTGCAT
511706 T
1 T
511707 GTCTAAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (11 bp):
TAGATTTGCAT
Left flanking sequence: Indices 511173 -- 511672
TTAGTTGAGCCAAGAGGACAAATACTAATACTGGCAAGTCGAGAAATCAATTAGCGCTCCTTTAT
AGTTATAGTTATAGTCTCGCGCCTTGGATTATCAGTCGAGTATATCAATTTCCTCTTCCTTATCA
GTCTCATGCTTCGCGCCTTGGATTATGAGTCAAGAAATCTATTACCTCTGGACTATTGGTCTCGT
ACAAAACAAAAATACCTCAATACCTCTCCCGGCAGGTCTCGTTAGAAACTCGACTCGTTCCTCGT
ACCTAAAGGCCCTATTCCGGCACGTCGAGCAATTCAATTCCTCTTCCCCTTGGTCTTAAATATAT
TACCGTGGTTGGATTATTAGTCGAGCTAGCTTCTATACTTAGAGTAAATAAACCTCTCCTTTCTT
CATTCAGTCGAGTACCGTACCTAACCTATACTGTAAAATCAAGCACTTGAGATGAGAACTCTTTC
CCTAAAGGTCGAGTGAAGAGGACAAATACTGATTGTCTCCAGCTC
Right flanking sequence: Indices 511707 -- 512206
GTCTAAATCTTGTTAGTTCTACCAAGTCAAATACTGGTACTGGAAGTCTCGCACTTTGGTATCTC
CGAAACATGTTGTTCACTTTCTACCTTTCTAACTTGAATAGAGCAAGGAAATAGATGTTTTAACC
GTCCGGAAATAGAATCTGGTTACCCACTCTATTTGCCACCTCTGTAAAGGGTCTTATCCTACCTC
CTAGTTGATATGACAGGTTATGCATCTGCCCTATATGACATGGATAGAGATCATTTTCACGGCAG
TGTAGCTATCAGAGTGGACTAATCGTTTTGTCTTAAACCCCACTTCTTGCGGACAAATCAAATCT
TTTTGTAGCCTCAGGATAGTTCTCCAGTTGTTGATCTATCCATCGTCGTCTAACCTCTATAGACT
TTTCTCATCTCAGCTAACAAGTAGCTTTCTTAACTAGCAAACAACTAGTAGCTTACCAAGGAAAA
GGAAAAGGAAATAAAAACCTAGGGAGTACTTTCCTAAGTGAAATA
Found at i:513010 original size:30 final size:31
Alignment explanation
Indices: 512974--513045 Score: 110
Period size: 30 Copynumber: 2.3 Consensus size: 31
512964 ATATCCCATT
512974 ACCGGAAAGGAAACAACAGG-ATTAGGATTG
1 ACCGGAAAGGAAACAACAGGAATTAGGATTG
513004 ACCGGAAAGGAAACAACAGGATTAATTAGGATTG
1 ACCGGAAAGGAAACAACAGG---AATTAGGATTG
513038 ACCGGAAA
1 ACCGGAAA
513046 CTACATGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
30 20 0.53
34 18 0.47
ACGTcount: A:0.44, C:0.14, G:0.28, T:0.14
Consensus pattern (31 bp):
ACCGGAAAGGAAACAACAGGAATTAGGATTG
Left flanking sequence: Indices 512474 -- 512973
GTTGTTGACTTAGCTTCCTGTATAACCATTTTATAACCATGGACTAATTCGTAAGTATTATAACT
CACTAATGCTTAGAAACAAACAAACTAGAGAACAAACCCATCCCTCTAACTAACAACAAAGGAAC
TAAACTAAACTAACGAATATTATATTATGGACTAGATCATTCATTCTATCTATTAACGCTGCCGC
TGGAAAAGGCGAAGTCTTCCCTCTGCTAACTCTGTTTTACCCAAGTATATTATATAATATAGCGA
TTATATCTTCTAACCAAAAGTAGCTCACTCACTACGCTACACCTATGCTTTCCCTGGTAAGTCTA
CCTCTTTCCCATCTACTACCATATATCCAATCCAATCCAGTATATACCTTGTGTTGTACTGGTTC
CTTGTAAGACTAGCTGACATTTTCTTTAGTTGACTAGCTTACATTATCATTCTCATTATCATGAG
ATATTATATATAGAAAGATTAGCTTATGGTTACATATATCCCATT
Right flanking sequence: Indices 513046 -- 513545
CTACATGTAAGGATTAGGATTGACCGGAAACTACATGTAAGGAATAAGGAATATGCCGCTAGCTA
CCTACCTATCTATACTAGTTTACTGAAAAGAATGGACTAGTTACTTTACTAGTTTAGTACTTTGT
TGAGAAAGGAAGAAGATTCCCACGAATCTATACAATACAAGAAATCAATAACCTAGGTTATATAG
ATATAGGAATCAACAAGAAAACATCAACAAGAAAACATCAACAAGTGCCACTAGTAGAAACGGGC
TATACTATCCTGGAACTAACGAGTACCTTTGTTTCTTTATTAGCCTTGTCCCCTCAGACGTCCGG
GGGCTTGCCGCTACTACATCTCAATCTCATATCCCTTACCTGAGCGAGAACTACGTTCATTAACC
ATCTATTGGTATTGGACTATCCATCCGTTATAGTTTACTTCAAACTACCTATACTAGCTATTTCT
TACCTCCCTAAGAGTTTGATTAGCCGGTAAAGGAAACCTGTATAA
Found at i:513063 original size:30 final size:30
Alignment explanation
Indices: 513028--513088 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
513018 AACAGGATTA
513028 ATTAGGATTGACCGGAAACTACATGTAAGG
1 ATTAGGATTGACCGGAAACTACATGTAAGG
513058 ATTAGGATTGACCGGAAACTACATGTAAGG
1 ATTAGGATTGACCGGAAACTACATGTAAGG
513088 A
1 A
513089 ATAAGGAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (30 bp):
ATTAGGATTGACCGGAAACTACATGTAAGG
Left flanking sequence: Indices 512528 -- 513027
GTATTATAACTCACTAATGCTTAGAAACAAACAAACTAGAGAACAAACCCATCCCTCTAACTAAC
AACAAAGGAACTAAACTAAACTAACGAATATTATATTATGGACTAGATCATTCATTCTATCTATT
AACGCTGCCGCTGGAAAAGGCGAAGTCTTCCCTCTGCTAACTCTGTTTTACCCAAGTATATTATA
TAATATAGCGATTATATCTTCTAACCAAAAGTAGCTCACTCACTACGCTACACCTATGCTTTCCC
TGGTAAGTCTACCTCTTTCCCATCTACTACCATATATCCAATCCAATCCAGTATATACCTTGTGT
TGTACTGGTTCCTTGTAAGACTAGCTGACATTTTCTTTAGTTGACTAGCTTACATTATCATTCTC
ATTATCATGAGATATTATATATAGAAAGATTAGCTTATGGTTACATATATCCCATTACCGGAAAG
GAAACAACAGGATTAGGATTGACCGGAAAGGAAACAACAGGATTA
Right flanking sequence: Indices 513089 -- 513588
ATAAGGAATATGCCGCTAGCTACCTACCTATCTATACTAGTTTACTGAAAAGAATGGACTAGTTA
CTTTACTAGTTTAGTACTTTGTTGAGAAAGGAAGAAGATTCCCACGAATCTATACAATACAAGAA
ATCAATAACCTAGGTTATATAGATATAGGAATCAACAAGAAAACATCAACAAGAAAACATCAACA
AGTGCCACTAGTAGAAACGGGCTATACTATCCTGGAACTAACGAGTACCTTTGTTTCTTTATTAG
CCTTGTCCCCTCAGACGTCCGGGGGCTTGCCGCTACTACATCTCAATCTCATATCCCTTACCTGA
GCGAGAACTACGTTCATTAACCATCTATTGGTATTGGACTATCCATCCGTTATAGTTTACTTCAA
ACTACCTATACTAGCTATTTCTTACCTCCCTAAGAGTTTGATTAGCCGGTAAAGGAAACCTGTAT
AACTTATTTATCAACTGATTTATCAACTGATTTATCAACTGATTT
Found at i:513268 original size:14 final size:14
Alignment explanation
Indices: 513249--513285 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
513239 AGATATAGGA
513249 ATCAACAAGAAAAC
1 ATCAACAAGAAAAC
513263 ATCAACAAGAAAAC
1 ATCAACAAGAAAAC
513277 ATCAACAAG
1 ATCAACAAG
513286 TGCCACTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.62, C:0.22, G:0.08, T:0.08
Consensus pattern (14 bp):
ATCAACAAGAAAAC
Left flanking sequence: Indices 512749 -- 513248
AAAAGTAGCTCACTCACTACGCTACACCTATGCTTTCCCTGGTAAGTCTACCTCTTTCCCATCTA
CTACCATATATCCAATCCAATCCAGTATATACCTTGTGTTGTACTGGTTCCTTGTAAGACTAGCT
GACATTTTCTTTAGTTGACTAGCTTACATTATCATTCTCATTATCATGAGATATTATATATAGAA
AGATTAGCTTATGGTTACATATATCCCATTACCGGAAAGGAAACAACAGGATTAGGATTGACCGG
AAAGGAAACAACAGGATTAATTAGGATTGACCGGAAACTACATGTAAGGATTAGGATTGACCGGA
AACTACATGTAAGGAATAAGGAATATGCCGCTAGCTACCTACCTATCTATACTAGTTTACTGAAA
AGAATGGACTAGTTACTTTACTAGTTTAGTACTTTGTTGAGAAAGGAAGAAGATTCCCACGAATC
TATACAATACAAGAAATCAATAACCTAGGTTATATAGATATAGGA
Right flanking sequence: Indices 513286 -- 513785
TGCCACTAGTAGAAACGGGCTATACTATCCTGGAACTAACGAGTACCTTTGTTTCTTTATTAGCC
TTGTCCCCTCAGACGTCCGGGGGCTTGCCGCTACTACATCTCAATCTCATATCCCTTACCTGAGC
GAGAACTACGTTCATTAACCATCTATTGGTATTGGACTATCCATCCGTTATAGTTTACTTCAAAC
TACCTATACTAGCTATTTCTTACCTCCCTAAGAGTTTGATTAGCCGGTAAAGGAAACCTGTATAA
CTTATTTATCAACTGATTTATCAACTGATTTATCAACTGATTTATCAACTTACTAGGGAACGGAA
CAAACCTCATATTCAATTCATATGGAGACTATGCTCATTCTAATTCTATTAACTCAGATGGACTA
TCTAATTCTATTAACGCCTAATCTAATTCTATTAACATAACACTTTAGCTATCTTCGTATGCCCT
CTCCTAAACTCAGTATGAACAGAACATATAGGGACTGCCTTACTA
Found at i:513564 original size:12 final size:12
Alignment explanation
Indices: 513544--513595 Score: 95
Period size: 12 Copynumber: 4.3 Consensus size: 12
513534 AAACCTGTAT
*
513544 AACTTATTTATC
1 AACTGATTTATC
513556 AACTGATTTATC
1 AACTGATTTATC
513568 AACTGATTTATC
1 AACTGATTTATC
513580 AACTGATTTATC
1 AACTGATTTATC
513592 AACT
1 AACT
513596 TACTAGGGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (12 bp):
AACTGATTTATC
Left flanking sequence: Indices 513044 -- 513543
AACTACATGTAAGGATTAGGATTGACCGGAAACTACATGTAAGGAATAAGGAATATGCCGCTAGC
TACCTACCTATCTATACTAGTTTACTGAAAAGAATGGACTAGTTACTTTACTAGTTTAGTACTTT
GTTGAGAAAGGAAGAAGATTCCCACGAATCTATACAATACAAGAAATCAATAACCTAGGTTATAT
AGATATAGGAATCAACAAGAAAACATCAACAAGAAAACATCAACAAGTGCCACTAGTAGAAACGG
GCTATACTATCCTGGAACTAACGAGTACCTTTGTTTCTTTATTAGCCTTGTCCCCTCAGACGTCC
GGGGGCTTGCCGCTACTACATCTCAATCTCATATCCCTTACCTGAGCGAGAACTACGTTCATTAA
CCATCTATTGGTATTGGACTATCCATCCGTTATAGTTTACTTCAAACTACCTATACTAGCTATTT
CTTACCTCCCTAAGAGTTTGATTAGCCGGTAAAGGAAACCTGTAT
Right flanking sequence: Indices 513596 -- 514095
TACTAGGGAACGGAACAAACCTCATATTCAATTCATATGGAGACTATGCTCATTCTAATTCTATT
AACTCAGATGGACTATCTAATTCTATTAACGCCTAATCTAATTCTATTAACATAACACTTTAGCT
ATCTTCGTATGCCCTCTCCTAAACTCAGTATGAACAGAACATATAGGGACTGCCTTACTAAGCAA
AAGGCGCTCACTTGTTTGTTAGCTACAACTTCCTTTGGTATAATGGATAGCTTTCGTTACTAATA
GATACTAGCTATCACCGGACTAAGAGAAAACAAACCATTAGGATTAGGAAAACCAACCCCATGAT
GGACAACGCAAAACTAATTAATAGCTCCCCTGTATAACTTACTAGTTAACATAGTTTCTAAACCT
CACTTCGTATTACCTATCTCAATACATTTGAAACCAGGAACTCACTTTCTTTGTCGAGAGCGCAA
CCCGCAACTAACTCAGTATGACCATATAGCCACTGCCCTCGTGAC
Found at i:514134 original size:22 final size:22
Alignment explanation
Indices: 514109--514159 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
514099 AACAAAAAAG
514109 GAGGTAAAGAATTTATCGGAAA
1 GAGGTAAAGAATTTATCGGAAA
*
514131 GAGGTAATGAATTTATCGGAAA
1 GAGGTAAAGAATTTATCGGAAA
514153 GAGGTAA
1 GAGGTAA
514160 CTCATTAGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.43, C:0.04, G:0.29, T:0.24
Consensus pattern (22 bp):
GAGGTAAAGAATTTATCGGAAA
Left flanking sequence: Indices 513609 -- 514108
AACAAACCTCATATTCAATTCATATGGAGACTATGCTCATTCTAATTCTATTAACTCAGATGGAC
TATCTAATTCTATTAACGCCTAATCTAATTCTATTAACATAACACTTTAGCTATCTTCGTATGCC
CTCTCCTAAACTCAGTATGAACAGAACATATAGGGACTGCCTTACTAAGCAAAAGGCGCTCACTT
GTTTGTTAGCTACAACTTCCTTTGGTATAATGGATAGCTTTCGTTACTAATAGATACTAGCTATC
ACCGGACTAAGAGAAAACAAACCATTAGGATTAGGAAAACCAACCCCATGATGGACAACGCAAAA
CTAATTAATAGCTCCCCTGTATAACTTACTAGTTAACATAGTTTCTAAACCTCACTTCGTATTAC
CTATCTCAATACATTTGAAACCAGGAACTCACTTTCTTTGTCGAGAGCGCAACCCGCAACTAACT
CAGTATGACCATATAGCCACTGCCCTCGTGACAAAAACAAAAAAG
Right flanking sequence: Indices 514160 -- 514659
CTCATTAGCTATCACTGTATTTGGTAGAACTACTGTATTGTATTAGCTCTTTCTTCTGTTTCCTT
GGTTTACTGAGAGGAGCTTCGTTGACTAGCTGACATTTGAGAAGAGCTTCTAAGACTAGTTGCCT
AGCTGACTAACTAGCTTACATTGGAACTTGAGGTTACATCCGCAACTAATACTAAACTAAAGAAC
CAAGGTAGCCTAACCCACCTTCTATCTATACTAGTTTACTACTGAGAATAGAAACGGACCATTCA
TTACCTATTCATTAATTGGAGTTGGATATACACTAACTGTAGCTTTCCATCTCACCGGGAACAAG
AACAACTGGATTGACTTACTAACTGTATTGCCCGGGAACTACATTCGTGTAATACTAGCTAGCTA
CCAGACGTACTATAGTAGTTAACTGAAAACGCCGGACGGCAGGAACTAGCCACTAGCATCGTGAG
CACACAAAAGTGCCAGGAGCTAACTCAGTACGCTACTACTGACTT
Done.