123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_012119
Parameters: 2 7 7 80 10 50 500
Length:  773279

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2742--2774	12	2.7	13	86	13	52	24	12	21	42	1.86
10708--10737	2	15.0	2	92	0	51	53	0	0	46	1.00
10711--10740	14	2.1	14	100	0	60	56	0	0	43	0.99
17284--17308	9	2.8	9	100	0	50	8	44	24	24	1.80
42211--42258	24	2.0	24	100	0	96	41	12	8	37	1.73
59535--59658	34	3.6	34	74	14	114	20	33	19	25	1.96
66767--66801	18	2.1	16	89	10	52	68	0	8	22	1.16
72258--72312	16	3.4	16	72	22	60	34	9	36	20	1.84
72245--72343	33	2.9	33	93	3	162	32	10	37	20	1.86
76602--76694	43	2.2	43	96	0	177	20	32	27	19	1.97
82130--82222	16	5.5	16	67	11	51	21	37	16	24	1.93
106430--106506	30	2.6	30	100	0	154	19	29	27	23	1.98
123752--123777	13	2.0	13	100	0	52	15	30	15	38	1.88
133771--133872	36	2.9	36	82	5	129	46	16	16	20	1.85
133772--133873	33	3.0	33	84	4	123	45	16	16	21	1.86
159847--159899	25	2.1	25	93	6	90	35	11	22	30	1.89
167143--167173	15	2.1	15	100	0	62	35	12	12	38	1.82
167179--167218	20	2.0	20	100	0	80	25	0	15	60	1.35
177296--177337	14	3.0	14	80	13	59	42	7	0	50	1.30
197791--197896	35	3.1	35	89	5	180	24	34	14	26	1.93
197773--197887	33	3.4	33	86	4	167	24	33	14	26	1.94
212994--213048	27	2.0	27	100	0	110	18	30	14	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228313--228373	15	4.3	15	76	16	58	36	1	39	22	1.64
265886--265940	27	2.1	26	82	3	65	1	36	16	45	1.58
267409--267461	22	2.7	18	74	20	52	47	1	0	50	1.12
271605--271634	15	2.0	15	100	0	60	33	13	20	33	1.91
286162--286219	24	2.4	24	97	0	107	44	8	43	3	1.51
312919--312968	19	2.6	19	100	0	100	24	12	38	26	1.90
316330--316385	17	3.4	17	71	14	62	26	32	14	26	1.95
316328--316410	33	2.5	33	100	0	166	28	32	15	22	1.95
316347--316401	16	3.4	16	71	14	58	30	29	16	23	1.96
319495--319594	16	6.2	16	71	6	76	25	35	15	25	1.94
319454--319594	32	4.3	31	78	6	75	25	34	16	24	1.95
319511--319594	33	2.6	32	83	10	109	25	33	15	26	1.95
332478--332541	22	3.0	22	81	9	78	50	0	0	50	1.00
332481--332536	24	2.3	24	78	6	60	50	0	0	50	1.00
332478--332542	8	8.1	8	75	24	50	50	0	0	49	1.00
335398--335429	11	2.6	13	90	9	50	25	12	6	56	1.59
354492--354531	18	2.2	18	86	8	55	40	12	0	47	1.41
354545--354589	2	23.5	2	86	8	67	51	0	0	48	1.00
356374--356407	2	17.0	2	90	0	50	44	2	0	52	1.16
368934--368983	2	26.5	2	80	11	61	50	0	2	48	1.12
368926--368978	16	3.3	15	85	12	70	47	0	3	49	1.19
368934--368983	13	3.6	15	76	13	54	50	0	2	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435398--435466	21	3.4	21	88	4	97	27	18	36	17	1.94
455273--455318	22	2.1	22	100	0	92	30	19	36	13	1.90
466075--466105	15	2.1	15	100	0	62	12	12	19	54	1.70
500536--500568	16	2.1	16	100	0	66	18	42	12	27	1.85
506639--506691	24	2.2	24	93	3	90	18	32	16	32	1.94
526286--526326	21	2.0	21	95	0	73	34	9	26	29	1.88
541825--541914	43	2.1	43	97	0	171	18	27	32	21	1.97
566380--566472	33	2.7	35	77	9	111	24	35	13	25	1.93
570455--570497	18	2.4	18	81	18	54	34	25	20	18	1.96
582115--582179	33	2.0	33	96	0	121	26	15	32	26	1.95
590877--590926	2	25.5	2	86	11	68	46	2	0	52	1.12
590878--590928	26	1.9	26	96	4	93	45	1	0	52	1.12
610376--610454	39	2.0	39	97	0	149	31	18	27	21	1.97
611122--611236	2	63.0	2	71	20	83	51	0	0	46	1.13
611435--611464	15	2.0	15	93	0	51	30	0	33	36	1.58
619821--619877	17	3.4	17	67	13	55	31	12	36	19	1.89
629973--630075	38	2.6	39	80	7	120	53	0	1	44	1.11
629976--630075	35	2.9	36	82	7	118	53	0	2	45	1.12
629973--630059	2	44.5	2	75	4	79	51	0	1	47	1.08
641091--641180	4	22.5	4	100	0	180	74	0	0	25	0.82
646668--646898	69	3.4	68	79	7	204	19	21	27	32	1.97
652000--652026	13	2.1	13	100	0	54	22	29	0	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653867--653896	12	2.5	12	94	0	51	46	6	23	23	1.75
658066--658097	15	2.1	15	94	0	55	43	6	0	50	1.27
670815--670853	11	3.7	11	86	13	64	64	0	0	35	0.94
670809--670851	20	2.2	20	95	0	77	58	0	0	41	0.98
699416--699444	13	2.2	13	100	0	58	27	13	0	58	1.36
708276--708336	16	3.8	16	75	12	61	24	29	16	29	1.96
712077--712157	33	2.5	33	86	10	121	28	32	16	23	1.96
751040--751089	22	2.2	23	96	3	93	36	16	0	48	1.46

Tables:   1

The End!