Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_010303
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 414903
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
File 1 of 2
Found at i:376 original size:18 final size:18
Alignment explanation
Indices: 353--412 Score: 102
Period size: 18 Copynumber: 3.3 Consensus size: 18
343 TTCCCATATT
*
353 CTATTGATGAAGATTCTC
1 CTATTGATGAAGATTCCC
371 CTATTGATGAAGATTCCC
1 CTATTGATGAAGATTCCC
389 CTATTGATGAAGATTCCC
1 CTATTGATGAAGATTCCC
*
407 ATATTG
1 CTATTG
413 TATTGATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (18 bp):
CTATTGATGAAGATTCCC
Left flanking sequence: Indices 1 -- 352
CCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGCCCCACCA
CTATTGGCAATAGTGCAGTGGCCGGCCGGATCCTTATTCATCAATTCTAGTGGTGGATTTGGTAT
ATGGCTCGTATCTATTCTCTATAGTCTATAGAAACCCATCTTAGAATAGTGGCCTGGCTCAAGTA
GTGGCCATGCATCTGTCGTTTCTATCTTGATATCCACCCTATCTTCTTTATTCAAGAGCATATAG
AGTAACATCTATTTTTGAATCTTGTCTAGTTCTAATTTTTGTCTAGTTTTTGAATCTTGAAAAGA
TTCTATATTGATTAAGATTCCCATATT
Right flanking sequence: Indices 413 -- 912
TATTGATGAAGATTCCCATATTTATGAATTACGTTCGCAGAGCCGACAGAGTGATCCGAACCTGC
CCGAAGCGAGCCCCCCGACTCATAACTAACATTCGGAGCAAGTTAAGTTGGTGAGCCGTATGATG
GGCAACTATCTCCTGCGGTTCGGAGAGGACTCAGCAGTTAGTCAGTACCCCCTTGGTTTTGGGTT
AGTTAGTACCCCATCCTTTGTTGTGGGGTGGACCCTTTCACTCAATTTTATTATATACGCTCAGC
GAAAATAATGTATCTCGATACACCTGGAACATGGATGATATATAAACCAATGGATCGTGACAAGT
CGTTACTACTAGCAATTACTTTCTCTTTCATTACTTCATCCTTTCCATATCCCTCTCCCTTGTTC
TTAGTTACTCATCAAATGGCACTAAGTTTGTATCTGTGAGTGAGATCATTTCCAAGGTTCAAAGA
AAGGGTAACCCGAACTACCATATGAATTAAAATTCATATTAATAG
Found at i:439 original size:18 final size:18
Alignment explanation
Indices: 354--440 Score: 95
Period size: 18 Copynumber: 4.6 Consensus size: 18
344 TCCCATATTC
354 TATTGATGAAGATTCTCC-
1 TATTGATGAAGATTC-CCA
*
372 TATTGATGAAGATTCCCC
1 TATTGATGAAGATTCCCA
390 TATTGATGAAGATTCCCATA
1 TATTGATGAAGATTCCC--A
410 TTGTATTGATGAAGATTCCCA
1 ---TATTGATGAAGATTCCCA
*
431 TATTTATGAA
1 TATTGATGAA
441 TTACGTTCGC
Statistics
Matches: 61, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
17 2 0.03
18 41 0.67
21 1 0.02
23 17 0.28
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (18 bp):
TATTGATGAAGATTCCCA
Left flanking sequence: Indices 1 -- 353
CCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGCCCCACCA
CTATTGGCAATAGTGCAGTGGCCGGCCGGATCCTTATTCATCAATTCTAGTGGTGGATTTGGTAT
ATGGCTCGTATCTATTCTCTATAGTCTATAGAAACCCATCTTAGAATAGTGGCCTGGCTCAAGTA
GTGGCCATGCATCTGTCGTTTCTATCTTGATATCCACCCTATCTTCTTTATTCAAGAGCATATAG
AGTAACATCTATTTTTGAATCTTGTCTAGTTCTAATTTTTGTCTAGTTTTTGAATCTTGAAAAGA
TTCTATATTGATTAAGATTCCCATATTC
Right flanking sequence: Indices 441 -- 940
TTACGTTCGCAGAGCCGACAGAGTGATCCGAACCTGCCCGAAGCGAGCCCCCCGACTCATAACTA
ACATTCGGAGCAAGTTAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTCGGAGAGG
ACTCAGCAGTTAGTCAGTACCCCCTTGGTTTTGGGTTAGTTAGTACCCCATCCTTTGTTGTGGGG
TGGACCCTTTCACTCAATTTTATTATATACGCTCAGCGAAAATAATGTATCTCGATACACCTGGA
ACATGGATGATATATAAACCAATGGATCGTGACAAGTCGTTACTACTAGCAATTACTTTCTCTTT
CATTACTTCATCCTTTCCATATCCCTCTCCCTTGTTCTTAGTTACTCATCAAATGGCACTAAGTT
TGTATCTGTGAGTGAGATCATTTCCAAGGTTCAAAGAAAGGGTAACCCGAACTACCATATGAATT
AAAATTCATATTAATAGGCTCCTGATTAGAATCAATACTAATAAA
Found at i:1612 original size:32 final size:32
Alignment explanation
Indices: 1162--1604 Score: 886
Period size: 32 Copynumber: 13.8 Consensus size: 32
1152 TGTGGGATCC
1162 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1194 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1226 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1258 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1290 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1322 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1354 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1386 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1418 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1450 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1482 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1514 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1546 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1578 CCTTCCCTTCGCTACGCTCAGGAAAGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGG
1605 TTTAACCTCT
Statistics
Matches: 411, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 411 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 662 -- 1161
ATACGCTCAGCGAAAATAATGTATCTCGATACACCTGGAACATGGATGATATATAAACCAATGGA
TCGTGACAAGTCGTTACTACTAGCAATTACTTTCTCTTTCATTACTTCATCCTTTCCATATCCCT
CTCCCTTGTTCTTAGTTACTCATCAAATGGCACTAAGTTTGTATCTGTGAGTGAGATCATTTCCA
AGGTTCAAAGAAAGGGTAACCCGAACTACCATATGAATTAAAATTCATATTAATAGGCTCCTGAT
TAGAATCAATACTAATAAATGGATCCGAACTATTAGAATTGCAATATATTACCTAAATCATTCGA
ACCGGCTAAGAATCTGAATTCGATTCTATATTCTAAAGAGAGAGAACACTATGCACTGTAGTGTG
AAATCCTATTCTGTGATTAAAGAGGGTACTATATAACTATGTGATTAAAAAGAGATCTCTATGGT
GTCCCTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCC
Right flanking sequence: Indices 1605 -- 2104
TTTAACCTCTATCGACCACATGACTGTTAATACAGGGATCCGATCTTGAATCTAATCCATAACTG
ATAGGATATGGCTCGTATCTATTTCTCTCTATTCACCCTTGAATCTAACATCACTATTGGGGATC
TGGTATTAAGGCTCCTTATTGGCTCGGATCGTTCTCTATCTTAGAATAGGATATGGCCACTCTAT
GGCATTGAAAGGAAATAGCAGGCCAGTAGTGGGCCGGCCCGTCTATCTTGTAGACATCCACCCTA
TCTTAGAATAGTGGCCTGGCTCCTGATAGTGCCATGAGAGATAGGCACTATTGGGCACAGTGCAT
AGACAGTGGCCGGCTACTGTCTATGCACTACGCCACATCCACCCTATAACAGCAAGGGCCATCCA
CTTTATATGTCACTGCATGCTCCACTATTATAGTATGATCCCCAGTAGATCCCACACTATTAGTT
TTACTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAG
Found at i:2108 original size:32 final size:32
Alignment explanation
Indices: 2067--2179 Score: 226
Period size: 32 Copynumber: 3.5 Consensus size: 32
2057 GTTTTACTCC
2067 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
2099 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
2131 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
2163 GCGTAGCGAAGGGAAGG
1 GCGTAGCGAAGGGAAGG
2180 GGCCGGCCAC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 81 1.00
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.22
Consensus pattern (32 bp):
GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
Left flanking sequence: Indices 1567 -- 2066
GAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGTTTAACCTCTATCGACCACATGACTGT
TAATACAGGGATCCGATCTTGAATCTAATCCATAACTGATAGGATATGGCTCGTATCTATTTCTC
TCTATTCACCCTTGAATCTAACATCACTATTGGGGATCTGGTATTAAGGCTCCTTATTGGCTCGG
ATCGTTCTCTATCTTAGAATAGGATATGGCCACTCTATGGCATTGAAAGGAAATAGCAGGCCAGT
AGTGGGCCGGCCCGTCTATCTTGTAGACATCCACCCTATCTTAGAATAGTGGCCTGGCTCCTGAT
AGTGCCATGAGAGATAGGCACTATTGGGCACAGTGCATAGACAGTGGCCGGCTACTGTCTATGCA
CTACGCCACATCCACCCTATAACAGCAAGGGCCATCCACTTTATATGTCACTGCATGCTCCACTA
TTATAGTATGATCCCCAGTAGATCCCACACTATTAGTTTTACTCC
Right flanking sequence: Indices 2180 -- 2679
GGCCGGCCACTCTTAGAATATAGGGTTTGTCTTTATTATATATAGAGTGTATATAACCTGTGTCT
TAGAATAGTGGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATATAT
TGCTTGTATCTCTTATGGGTGCAGCCTCTATAGTATAGAGCAGTGCCCATCCTATTGCCACATCC
ACCCTATATTATTAGAATTCCCAAGACAATAGTGCAGTGGCACGGCTCCCGCCTTAATAGTGTCA
TCTCAATCACGTGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGT
AGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGGGTCCTTTCCCGGATCCT
TATTCATCAATTCTAGTGGTGGATTTGGTATAGGCTCGTATCTTTACCTGTAGTAGATAGAAACC
CATCTTAGAATAGTGGTCTGGCCCGGCCATGCATCTGTCGCTTCT
Found at i:2561 original size:32 final size:32
Alignment explanation
Indices: 2458--2549 Score: 184
Period size: 32 Copynumber: 2.9 Consensus size: 32
2448 ACGTGGTAAA
2458 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
2490 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
2522 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
2550 GGGGTCCTTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.22, C:0.23, G:0.33, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 1958 -- 2457
TACGCCACATCCACCCTATAACAGCAAGGGCCATCCACTTTATATGTCACTGCATGCTCCACTAT
TATAGTATGATCCCCAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTTAT
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATC
CCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCACTCTTAGAATATAGGGTTTGTCTTTATTA
TATATAGAGTGTATATAACCTGTGTCTTAGAATAGTGGCCCGTGCCTTCCCTTCGCTACGCGGAG
TAAAACTATGGGTTAACCTGGATATATTGCTTGTATCTCTTATGGGTGCAGCCTCTATAGTATAG
AGCAGTGCCCATCCTATTGCCACATCCACCCTATATTATTAGAATTCCCAAGACAATAGTGCAGT
GGCACGGCTCCCGCCTTAATAGTGTCATCTCAATCACGTGGTAAA
Right flanking sequence: Indices 2550 -- 3049
GGGGTCCTTTCCCGGATCCTTATTCATCAATTCTAGTGGTGGATTTGGTATAGGCTCGTATCTTT
ACCTGTAGTAGATAGAAACCCATCTTAGAATAGTGGTCTGGCCCGGCCATGCATCTGTCGCTTCT
ATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGTCTTGGTTTAGTT
CTTTCGAATTTTTGTCTAGTTTTTGAATCTTGAAAAGATTCTATATTGATTAAGATTCTCATATT
GATGAAGATTCTCCTATTGATTAAGATTCCCATATTGATGAACACCCCACATCGACTCGCAGCTC
TAGAGTACGGATATAGGTTAGTGAAGTACCCACTACTCATATAGGTTGCTACTTTAACAAGGACT
TGACTGATGTGCTTTCCCCAATCCCCGTGTTAAAGGATGCGACCTACTACTAGCTCTGGTTCGTT
CATCGACCCTTCATTCAATGTAAATAGTTGAGATCGGATCGAATC
Found at i:2810 original size:18 final size:18
Alignment explanation
Indices: 2779--2848 Score: 106
Period size: 18 Copynumber: 3.9 Consensus size: 18
2769 GAATCTTGAA
2779 AAGATTCT-ATATTGATT
1 AAGATTCTCATATTGATT
*
2796 AAGATTCTCATATTGATG
1 AAGATTCTCATATTGATT
*
2814 AAGATTCTCCTATTGATT
1 AAGATTCTCATATTGATT
*
2832 AAGATTCCCATATTGAT
1 AAGATTCTCATATTGAT
2849 GAACACCCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
17 8 0.17
18 39 0.83
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (18 bp):
AAGATTCTCATATTGATT
Left flanking sequence: Indices 2279 -- 2778
GGAGTAAAACTATGGGTTAACCTGGATATATTGCTTGTATCTCTTATGGGTGCAGCCTCTATAGT
ATAGAGCAGTGCCCATCCTATTGCCACATCCACCCTATATTATTAGAATTCCCAAGACAATAGTG
CAGTGGCACGGCTCCCGCCTTAATAGTGTCATCTCAATCACGTGGTAAACCCTTTCCTGAGCGTA
GCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAG
CGAAGGGAAGGGGGGTCCTTTCCCGGATCCTTATTCATCAATTCTAGTGGTGGATTTGGTATAGG
CTCGTATCTTTACCTGTAGTAGATAGAAACCCATCTTAGAATAGTGGTCTGGCCCGGCCATGCAT
CTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGTC
TTGGTTTAGTTCTTTCGAATTTTTGTCTAGTTTTTGAATCTTGAA
Right flanking sequence: Indices 2849 -- 3348
GAACACCCCACATCGACTCGCAGCTCTAGAGTACGGATATAGGTTAGTGAAGTACCCACTACTCA
TATAGGTTGCTACTTTAACAAGGACTTGACTGATGTGCTTTCCCCAATCCCCGTGTTAAAGGATG
CGACCTACTACTAGCTCTGGTTCGTTCATCGACCCTTCATTCAATGTAAATAGTTGAGATCGGAT
CGAATCAGATGAGGAGTGAGTGAATATTGATTCGAGGCGATCTTCCCCTATCGAGGGAGCAGAGT
ACTGATAAGAAGAGGACTTCGGTTTCCCCCTGCTGTGCTAATGCGCCTGGTCGCGTGGCAAGTGG
GTCAATTGTTTTTCCCCATTTCTATTTACATAGTTTTTATCGAAGCGTCGACCGGTTGTTTGTAG
GCCGCTCCCTTTCCCCTATTACTACTCTTATCAACTACGACCTACATTCGGTAAGAAACGACCAC
CCGTTACTTAATAATTTCTAAGTAAAAGCCAGGGACCGACCAAGC
Found at i:2831 original size:36 final size:35
Alignment explanation
Indices: 2779--2851 Score: 119
Period size: 36 Copynumber: 2.1 Consensus size: 35
2769 GAATCTTGAA
*
2779 AAGATTCTATATTGATTAAGATTCTCATATTGATG
1 AAGATTCTATATTGATTAAGATTCCCATATTGATG
*
2814 AAGATTCTCCTATTGATTAAGATTCCCATATTGATG
1 AAGATTCT-ATATTGATTAAGATTCCCATATTGATG
2850 AA
1 AA
2852 CACCCCACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 8 0.23
36 27 0.77
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (35 bp):
AAGATTCTATATTGATTAAGATTCCCATATTGATG
Left flanking sequence: Indices 2279 -- 2778
GGAGTAAAACTATGGGTTAACCTGGATATATTGCTTGTATCTCTTATGGGTGCAGCCTCTATAGT
ATAGAGCAGTGCCCATCCTATTGCCACATCCACCCTATATTATTAGAATTCCCAAGACAATAGTG
CAGTGGCACGGCTCCCGCCTTAATAGTGTCATCTCAATCACGTGGTAAACCCTTTCCTGAGCGTA
GCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAG
CGAAGGGAAGGGGGGTCCTTTCCCGGATCCTTATTCATCAATTCTAGTGGTGGATTTGGTATAGG
CTCGTATCTTTACCTGTAGTAGATAGAAACCCATCTTAGAATAGTGGTCTGGCCCGGCCATGCAT
CTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGTC
TTGGTTTAGTTCTTTCGAATTTTTGTCTAGTTTTTGAATCTTGAA
Right flanking sequence: Indices 2852 -- 3351
CACCCCACATCGACTCGCAGCTCTAGAGTACGGATATAGGTTAGTGAAGTACCCACTACTCATAT
AGGTTGCTACTTTAACAAGGACTTGACTGATGTGCTTTCCCCAATCCCCGTGTTAAAGGATGCGA
CCTACTACTAGCTCTGGTTCGTTCATCGACCCTTCATTCAATGTAAATAGTTGAGATCGGATCGA
ATCAGATGAGGAGTGAGTGAATATTGATTCGAGGCGATCTTCCCCTATCGAGGGAGCAGAGTACT
GATAAGAAGAGGACTTCGGTTTCCCCCTGCTGTGCTAATGCGCCTGGTCGCGTGGCAAGTGGGTC
AATTGTTTTTCCCCATTTCTATTTACATAGTTTTTATCGAAGCGTCGACCGGTTGTTTGTAGGCC
GCTCCCTTTCCCCTATTACTACTCTTATCAACTACGACCTACATTCGGTAAGAAACGACCACCCG
TTACTTAATAATTTCTAAGTAAAAGCCAGGGACCGACCAAGCAGG
Found at i:5288 original size:17 final size:18
Alignment explanation
Indices: 5256--5289 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5246 TCGAGTATTC
*
5256 ATCAATATGGGAATCTTA
1 ATCAATATGAGAATCTTA
5274 ATCAATAT-AGAATCTT
1 ATCAATATGAGAATCTT
5290 TTCAAGATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
ATCAATATGAGAATCTTA
Left flanking sequence: Indices 4756 -- 5255
TCAGCATCAGATAACACCAGCTATGCGAGTGTCCCTGACTCTCAGTTATCATAATCTTCCTAACC
ATCCCTCGCCGCAGCGCCCAGGTAAAGATTACAGCTAATGGATGATGTGTTCTTGGCGAATAACG
GTGTTTTCGAATCTACGATCTTACCTATTAAGTAGGTTATACTCGCCCTTCTTTACGAATTGGAA
TACACCACTCGCTATCGGATCCGAACCGAGAATCCATAGGAACCTCTTTTAAGTCTGTCGTGTTT
ACCATTTCCACCAAGCGAGCATGCTCACTATCGGACTTGAACCGATAACCGTTTGAATGGAACAG
ATTTTGAGTCTGTCGTGTTTACCATTTTCACCAAGTGAGCTTGGGGAAGCGAAGCCAGATCTTTG
TGCGGAGATAATAGATTGATGCTCCGCCCTCTTATCGCCACTTTCTTCTCTAGACACCCACCCCT
TCGCCGAAGCTTCTGGCTTTTGATTAAGGACCTGCTCGAGTATTC
Right flanking sequence: Indices 5290 -- 5789
TTCAAGATTCAAAAACTAGACAAAAATTCGAAAGAACTAAACCAAGACATATACCATGCAAATGC
TCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCC
ACTATTCTAAGATGGGTTTCTATCTACTATAGCATAGATCGGCCTGCTATTCCCTTTCAATGCCA
TAGAGTGGCCATATCCTATTCTAAGATAGAGAACGATCCGAGCCAAGAACATTTATAGGAGCCTT
AATACCAAATCCACCTGATTGGGACTGATAAATGTATTCGGAAAATAGATGGCACTATCGGTAAC
CGGACTGGATTGGGAATCCTAATAAGATAGGGTGGATGTGGCAATAGGATGGGCACTGCTCTATA
CTATATATACTGCACCCATAAGAGATACAAGCAATATATCCGGGTTAACCCATAGTTTTACTCCG
CGTAGCGAAGGGAAGGCACGGGCCACTATTCTAAGACACAGGTTA
Found at i:5884 original size:32 final size:32
Alignment explanation
Indices: 5843--5998 Score: 312
Period size: 32 Copynumber: 4.9 Consensus size: 32
5833 GTGGCCGGCC
5843 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
5875 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
5907 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
5939 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
5971 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
5999 TTTACCCGGG
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 124 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 5343 -- 5842
CCATGCAAATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGG
CCGGGCCAGGCCACTATTCTAAGATGGGTTTCTATCTACTATAGCATAGATCGGCCTGCTATTCC
CTTTCAATGCCATAGAGTGGCCATATCCTATTCTAAGATAGAGAACGATCCGAGCCAAGAACATT
TATAGGAGCCTTAATACCAAATCCACCTGATTGGGACTGATAAATGTATTCGGAAAATAGATGGC
ACTATCGGTAACCGGACTGGATTGGGAATCCTAATAAGATAGGGTGGATGTGGCAATAGGATGGG
CACTGCTCTATACTATATATACTGCACCCATAAGAGATACAAGCAATATATCCGGGTTAACCCAT
AGTTTTACTCCGCGTAGCGAAGGGAAGGCACGGGCCACTATTCTAAGACACAGGTTATATACACT
CTATATATAATAAAGACAAACCCTATATTCTAAGAGTGGCCGGCC
Right flanking sequence: Indices 5999 -- 6498
TTTACCCGGGGCATGGCCACTGCTAGATCTCTGTTGTAATAATTAGGATCAGGGCCTGATCACTG
TCACTGTGCCTTTTATTCACATCGATTAGGATCAAGGATCTAATCGCTATGGCTATTCACATATT
CACATTGATTAAGATCCAAGCCGGTTAGAAAGATCAAGCATCTATTAGAATCTAGGATCTAATTC
ATTTCTTAGAGTGGCCGGCTCTCGAACCGGATCATGAGCCTATGGCATTGAATTAGATCTAGGGC
GGCGAGCGGGAGGGATTGAGGCGACCGCCCGCATCCCGCTGGCTGGTGGGGCGCTCTTTTGTTTT
GAACCCCCCTGAATAAAGAAAAGAATCACCACCTTCTAATATAAAAATGAAAGAAACCCCTATTC
GGGGGCGCATACTACTGATAAGGCACTATCATGCATGAGGAAGAGGGGGCACTACTAATGAGAAT
GAATGCTGGGGGGGTTTATGCCGGCCCGGGGCGCAAGGAAGGTGC
Found at i:8716 original size:32 final size:32
Alignment explanation
Indices: 8680--9225 Score: 1092
Period size: 32 Copynumber: 17.1 Consensus size: 32
8670 CTCGTTCTAG
8680 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8712 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8744 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8776 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8808 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8840 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8872 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8904 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8936 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
8968 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
9000 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
9032 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
9064 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
9096 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
9128 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
9160 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
9192 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
1 GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
9224 GG
1 GG
9226 GCCCCTTCAC
Statistics
Matches: 514, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 514 1.00
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.25
Consensus pattern (32 bp):
GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
Left flanking sequence: Indices 8180 -- 8679
CTATGAGGAGTTAGCTGCGCATTGCATTGTGGCATGGTCGATTGCTCCGCCTCCCGGCCGGCTCT
TCCGGGCTTGTTCGAAGGCAATATCTATTTCGTTGAATAGGGTCATGCGCTGCGCCAATTGATAA
GTAGAGTTGGGATCGTCGCTCGTTTCTGGGCATGCGCTGGGCCTTGCGTTGTAGCTCTTTGTCCC
CATCGTTCGCAGTCGCTCTCTTGGCTAATTACTCATCCATTTGAGGCCCTTATAACAAATCCTGA
TCAATATAGGGGGTTGTTACTCGGCATGCGCTGGGCGGCTTTTCCTGCATGGTCGGTTTGCTCCT
ACGGTGGTGGCTTGATCGATTGATTGATCCCATTTGAGGGGGCTCCCGTCTCGGCCTCGCCCCGT
GTATTGTTCGATGGTTCCTTGGCTTGACCTGTGATCGTTCGCTTTGCCCTCTCTGCCTAGTGAAG
TAGGCGGTTGTGTCGTTCCTTCCCCTCGTTTCTGACTCGTTCTAG
Right flanking sequence: Indices 9226 -- 9725
GCCCCTTCACTCGTTCTGGGGATAACCGGAAAGATCTCATGAAGATGGGGGCCGAGCGATTAGGC
CGTTTCCTTGAGTGAAGATTACCTTGGTTGAGCAAGGTTATCGCTTGCGCGAGGTTCGTCTCTGT
AAGGAGCTCGCATTCGCGAGGTCCCTTTCTGTGTGCTCGCAGCCCTATTAAAGAGAAAGAGAAAG
TAGGGTCCCCGCATGCGCGATAATGGGTAGAGAATGTCACGGCTACGCCCGTGAATGAGTGCAAG
AGCGATGGGTGTCTAATTCGTCCATGCTGCTGTTCCGGCCAGGTAATTTACACAAGGGTAATGCC
ATGTTTGCCCAGCATTAGTTGTATGGGTTTTGTCAATGGTTGTATGGTTTTTCTTGTAAGTCTTT
CTCCATTTATCCCATATTCCTATGGTATGGATCCGAGGCGAGGGCCGGGGACGAAGCCCGCATAT
TAGCTGCGCTCAATATGCGTGCTTTTCCTCTGGTGCGATAGTAAT
Found at i:14054 original size:32 final size:32
Alignment explanation
Indices: 14018--14111 Score: 188
Period size: 32 Copynumber: 2.9 Consensus size: 32
14008 CAGAAGGCAC
14018 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
14050 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
14082 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
14112 GCCAGATCCC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.23
Consensus pattern (32 bp):
ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
Left flanking sequence: Indices 13518 -- 14017
CCGCCCCGCCCCTATCACTCTTGAAGTAACCACCCTCCACTAGGGAGGGCCTTCTTCTATTGGTA
GGGTATTTTACTATTTCGACATGGTATTTGAGGTTACGGGGTTACGTTATTGCTCCTTGTCCTCC
AATTCCCATAAATTGGTTCAGTAGAATAGAGGCTCGTGCGTGGTTGTTTTGATTTGATCGAGTGA
GAAGATTGCCCGCATGCGGGTTGAAGCCAGGCCCTCATCCTCCCCGGATCCTTCTGTCAGTTCTT
CAGTTCCTCGTTAATAGGAGGAGATATTCGTTTTATGGTTCGGAGGCCCGGCTTTTGAGCAATAG
AAGCTGTGCCTTTGGCGGTTGCCGTCGGGTCTGGATCTGGGGTTAGCTACCCATCATGATCATGA
GCAATAAACCGGTGCAGGCCTGGCCTTACTTACTCATATGGTAGTGGTCGGTCTCTTTTTAGCTC
GATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCAGAAGGCAC
Right flanking sequence: Indices 14112 -- 14611
GCCAGATCCCGAGCTTTCAACAGTTGATCCCGATCTGATCTCATCTGGTGGGAGTTTCCATTGAA
TCTCTTATTCGAGAAAGGAAAGGTGCCCCTCTTATCCCTAAAGGGGGGTCTTGCCCTTACAGGAA
GACGACTCCCCTATCAAGGAATGAGGAAAGGGCATTGGACCTAATCAATCAAGGGATGGGGTTTC
TCATTCGAATCCAAAGGTAACCAACCCTTTTTTAGGCAATTGTATCCTGGTATTTGGCATCCCTT
TATTGATTCTTTGGGGCGGCTGGCGCATTCTCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGA
TGACCTTGCGAATCTTCGTATATATAATAATTACTTGCGCTCGAAATCACGTATATAGATAGACT
CCCCAATAGTGGAGACTCTTGATTGAAGGTGGTCTCAGATGGCCAATCACATTTCCGTCCGTTGT
TTGTTTTACCCAACCACAGTCTCAAAACATCATTGATTCAATAAG
Found at i:17862 original size:22 final size:22
Alignment explanation
Indices: 17837--17905 Score: 129
Period size: 22 Copynumber: 3.1 Consensus size: 22
17827 CTTGGGACTG
17837 ATAGATGGCACTATCGGGAATC
1 ATAGATGGCACTATCGGGAATC
17859 ATAGATGGCACTATCGGGAATC
1 ATAGATGGCACTATCGGGAATC
*
17881 ATAGATGGCACTATTGGGAATC
1 ATAGATGGCACTATCGGGAATC
17903 ATA
1 ATA
17906 ATAAGATAGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (22 bp):
ATAGATGGCACTATCGGGAATC
Left flanking sequence: Indices 17337 -- 17836
AGGTAATACAGGCGGCCCTGATGATGAGGGGTAAAAGGTGTGGTGGTGGGTAGGCGGGCCTTTTA
CACCATTACGAGGAACGCGAAAAGGTTTGTTCCCGCCAGTTCGGAAAGCACCGGTTCCACAGAGT
CTATACTATGAAAAACGAGATCTGCTGGCGGCCGATAGCTGGCCGGAAAAGATGACGCCCTTGTA
CCAACGATCAAGGGTGCGGAACTGGGAGGTGGATTGGGCGGGTTGCACAACCTGAGGTTATCCCT
TGAATGAATAATGAATAAATAAATGCGTGAGGCGCGCAGCCGCTACTCCCCTACCCTTTAAAATA
GAAAGGACTTGGAGGGAGGCCTTCTACCTAAGCATCTTACTCGAACTGCTCGAGTTTTTTCGAAA
AAACTATACAAAAAAGATGTGGTTATATATGCTCTAATGCTCTAAGATGGGTTTCTATCTACTAC
AGGTCAAGATACGAGCAAGATACCAAATCCACCTGCTTGGGACTG
Right flanking sequence: Indices 17906 -- 18405
ATAAGATAGGGTGGATGTGGCAATAAGATTGGGTCTATATAGGCTGCACCCACAAGGAGATACAA
GCAATATATCCAGGTTAACCCATAGTTTTACTCCGCGTAAGGTTATCCCTTCCCTTCGCTACGCG
GAGTAAAACTAATAGTGTGGGATCTACTGGGGATCATACTATAATAGTGGAGCATGCAGTGACAT
ATAAAGTGGATGGCCCTTGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCGGCCA
CTGTCTATGCACTGTGCCCAATAGTGCCTATCTCTCATGGCACTATCAGGAGCCAGGCCACTATT
CTAAGATAGGGTGGATGTATGCACCTATAGACTGACCGGGCCCATACACTAATAGATTATCTGAT
GGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTATCTATCAGATGGCACTAT
CTTAGTTGCCGTCTATCAGATGACAAGGGCTATTATCTATCAGAT
Found at i:18330 original size:29 final size:29
Alignment explanation
Indices: 18288--18382 Score: 102
Period size: 29 Copynumber: 3.3 Consensus size: 29
18278 ACTAATAGAT
*
18288 TATCTGATGGCACTATCTTAGCTGCCGTC
1 TATCAGATGGCACTATCTTAGCTGCCGTC
*** ****
18317 TATCAGATGGCACTAT-AGGGCTATTATC
1 TATCAGATGGCACTATCTTAGCTGCCGTC
*
18345 TATCAGATGGCACTATCTTAGTTGCCGTC
1 TATCAGATGGCACTATCTTAGCTGCCGTC
18374 TATCAGATG
1 TATCAGATG
18383 ACAAGGGCTA
Statistics
Matches: 49, Mismatches: 16, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
28 21 0.43
29 28 0.57
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (29 bp):
TATCAGATGGCACTATCTTAGCTGCCGTC
Left flanking sequence: Indices 17788 -- 18287
CTACAGGTCAAGATACGAGCAAGATACCAAATCCACCTGCTTGGGACTGATAGATGGCACTATCG
GGAATCATAGATGGCACTATCGGGAATCATAGATGGCACTATTGGGAATCATAATAAGATAGGGT
GGATGTGGCAATAAGATTGGGTCTATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCA
GGTTAACCCATAGTTTTACTCCGCGTAAGGTTATCCCTTCCCTTCGCTACGCGGAGTAAAACTAA
TAGTGTGGGATCTACTGGGGATCATACTATAATAGTGGAGCATGCAGTGACATATAAAGTGGATG
GCCCTTGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCGGCCACTGTCTATGCAC
TGTGCCCAATAGTGCCTATCTCTCATGGCACTATCAGGAGCCAGGCCACTATTCTAAGATAGGGT
GGATGTATGCACCTATAGACTGACCGGGCCCATACACTAATAGAT
Right flanking sequence: Indices 18383 -- 18882
ACAAGGGCTATTATCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTAATGCTATTCGA
TTAGTAGCTATATCCTATTGTGATTTAGAGCCTTAGATATAAGGCTAATGCTATTCTATTAGTAG
CTATATCCTATTGTGATTTAGAGCCTTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATC
CTATTGTGATTTAGAGTCTTAGATATAAGGCTATTGCTATCTATGCCATAATCATATCCTATTGT
GATTTAGAGTCTTAGATCCAAGGGTGGGTATATAACTGCGATAGGCACGGGCCATATCCTATCTG
ATGGCACTATCTTAGCTACTATCAAATAGGGCTATTGCTATCCGATCAGTAGCCATACACTATCA
AGCTTTTAGATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGC
TATTCTATTAGTAGCTATCGCTATGGCTATTAAGAGCCTTAGATC
Found at i:18394 original size:53 final size:57
Alignment explanation
Indices: 18288--18417 Score: 214
Period size: 57 Copynumber: 2.4 Consensus size: 57
18278 ACTAATAGAT
*
18288 TATCTGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTATC
1 TATCAGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTATC
*
18345 TATCAGATGGCACTATCTTAGTTGCCGTCTATCAGAT-G-AC-A-AGGGCTATTATC
1 TATCAGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTATC
18398 TATCAGATGGCACTATCTTA
1 TATCAGATGGCACTATCTTA
18418 ATAGGTAGAT
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
53 32 0.45
54 1 0.01
55 2 0.03
56 1 0.01
57 35 0.49
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (57 bp):
TATCAGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTATC
Left flanking sequence: Indices 17788 -- 18287
CTACAGGTCAAGATACGAGCAAGATACCAAATCCACCTGCTTGGGACTGATAGATGGCACTATCG
GGAATCATAGATGGCACTATCGGGAATCATAGATGGCACTATTGGGAATCATAATAAGATAGGGT
GGATGTGGCAATAAGATTGGGTCTATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCA
GGTTAACCCATAGTTTTACTCCGCGTAAGGTTATCCCTTCCCTTCGCTACGCGGAGTAAAACTAA
TAGTGTGGGATCTACTGGGGATCATACTATAATAGTGGAGCATGCAGTGACATATAAAGTGGATG
GCCCTTGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCGGCCACTGTCTATGCAC
TGTGCCCAATAGTGCCTATCTCTCATGGCACTATCAGGAGCCAGGCCACTATTCTAAGATAGGGT
GGATGTATGCACCTATAGACTGACCGGGCCCATACACTAATAGAT
Right flanking sequence: Indices 18418 -- 18917
ATAGGTAGATATAAGGCTAATGCTATTCGATTAGTAGCTATATCCTATTGTGATTTAGAGCCTTA
GATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCTTAGATATAA
GGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGTCTTAGATATAAGGCTATT
GCTATCTATGCCATAATCATATCCTATTGTGATTTAGAGTCTTAGATCCAAGGGTGGGTATATAA
CTGCGATAGGCACGGGCCATATCCTATCTGATGGCACTATCTTAGCTACTATCAAATAGGGCTAT
TGCTATCCGATCAGTAGCCATACACTATCAAGCTTTTAGATTAGCTATTGTCTATCAGATGGCAC
TATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATTAGTAGCTATCGCTATGGCTATTAAGA
GCCTTAGATCCAAGATCCAAGGCTATTGCTATTCTATTAGTAACT
Found at i:18513 original size:58 final size:58
Alignment explanation
Indices: 18423--18659 Score: 372
Period size: 58 Copynumber: 4.1 Consensus size: 58
18413 TCTTAATAGG
*
18423 TAGATATAAGGCTAATGCTATTCGATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
18481 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
*
18539 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGTCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
* * * *
18597 TAGATATAAGGCTATTGCTA-TCTATGCCA-TA-ATCATATCCTATTGTGATTTAGAGTCT
1 TAGATATAAGGCTAATGCTATTCTAT--TAGTAGCT-ATATCCTATTGTGATTTAGAGCCT
18655 TAGAT
1 TAGAT
18660 CCAAGGGTGG
Statistics
Matches: 171, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
57 6 0.04
58 164 0.96
59 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.40
Consensus pattern (58 bp):
TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
Left flanking sequence: Indices 17923 -- 18422
TGGCAATAAGATTGGGTCTATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTA
ACCCATAGTTTTACTCCGCGTAAGGTTATCCCTTCCCTTCGCTACGCGGAGTAAAACTAATAGTG
TGGGATCTACTGGGGATCATACTATAATAGTGGAGCATGCAGTGACATATAAAGTGGATGGCCCT
TGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCGGCCACTGTCTATGCACTGTGC
CCAATAGTGCCTATCTCTCATGGCACTATCAGGAGCCAGGCCACTATTCTAAGATAGGGTGGATG
TATGCACCTATAGACTGACCGGGCCCATACACTAATAGATTATCTGATGGCACTATCTTAGCTGC
CGTCTATCAGATGGCACTATAGGGCTATTATCTATCAGATGGCACTATCTTAGTTGCCGTCTATC
AGATGACAAGGGCTATTATCTATCAGATGGCACTATCTTAATAGG
Right flanking sequence: Indices 18660 -- 19159
CCAAGGGTGGGTATATAACTGCGATAGGCACGGGCCATATCCTATCTGATGGCACTATCTTAGCT
ACTATCAAATAGGGCTATTGCTATCCGATCAGTAGCCATACACTATCAAGCTTTTAGATTAGCTA
TTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATTAGTAGCTA
TCGCTATGGCTATTAAGAGCCTTAGATCCAAGATCCAAGGCTATTGCTATTCTATTAGTAACTAT
CGCTATGGCTATTAAGAGCCTTAGATCCAAGGCTATTGCTATTCTATTAGTAGCCATATCCTATC
GCATTTAGATTCTATTCAAGGCACGGGCCATATACTATCAAGCTATTATCTTAGCAGGTAGATCC
AAGGTTAACCCATAGTTTTACTCCGCGTAGCGAAGGGAAGGCACGGATCCATAAGAATATCCTAA
TAGGCGGATCCCTGACTAAGATAGTGTCATCTCGATAAATGCAAC
Found at i:18899 original size:64 final size:64
Alignment explanation
Indices: 18827--18950 Score: 239
Period size: 64 Copynumber: 1.9 Consensus size: 64
18817 AGGTAGATAT
*
18827 AAGGCTATTGCTATTCTATTAGTAGCTATCGCTATGGCTATTAAGAGCCTTAGATCCAAGATCC
1 AAGGCTATTGCTATTCTATTAGTAACTATCGCTATGGCTATTAAGAGCCTTAGATCCAAGATCC
18891 AAGGCTATTGCTATTCTATTAGTAACTATCGCTATGGCTATTAAGAGCCTTAGATCCAAG
1 AAGGCTATTGCTATTCTATTAGTAACTATCGCTATGGCTATTAAGAGCCTTAGATCCAAG
18951 GCTATTGCTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (64 bp):
AAGGCTATTGCTATTCTATTAGTAACTATCGCTATGGCTATTAAGAGCCTTAGATCCAAGATCC
Left flanking sequence: Indices 18327 -- 18826
CACTATAGGGCTATTATCTATCAGATGGCACTATCTTAGTTGCCGTCTATCAGATGACAAGGGCT
ATTATCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTAATGCTATTCGATTAGTAGCT
ATATCCTATTGTGATTTAGAGCCTTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCT
ATTGTGATTTAGAGCCTTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGA
TTTAGAGTCTTAGATATAAGGCTATTGCTATCTATGCCATAATCATATCCTATTGTGATTTAGAG
TCTTAGATCCAAGGGTGGGTATATAACTGCGATAGGCACGGGCCATATCCTATCTGATGGCACTA
TCTTAGCTACTATCAAATAGGGCTATTGCTATCCGATCAGTAGCCATACACTATCAAGCTTTTAG
ATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATAT
Right flanking sequence: Indices 18951 -- 19450
GCTATTGCTATTCTATTAGTAGCCATATCCTATCGCATTTAGATTCTATTCAAGGCACGGGCCAT
ATACTATCAAGCTATTATCTTAGCAGGTAGATCCAAGGTTAACCCATAGTTTTACTCCGCGTAGC
GAAGGGAAGGCACGGATCCATAAGAATATCCTAATAGGCGGATCCCTGACTAAGATAGTGTCATC
TCGATAAATGCAACAGTGAGATCACTATTGGATTAGGCCCTACACTATAGACGGGGCATGGCCAC
TGCTCCGTCTATAGATCTTGTTTCCTCTATAGACGGAGCAATCAGGAGGAGCCTTTATTAGGTCC
AAAATAGTTCGGATCCATCTAAGTTCAGGGAATATCTATAGCATAGAAGAGCTCGGATCCATCTA
AGACAAATCAAGATAGAAGCAATAGAATACCATAGAGCCTACAACAGAGATCTAGCACTAATCAC
ATCCCTATGAATTAGGATGTTCCCTATGCATTAGAATCAGGGCCT
Found at i:18986 original size:64 final size:60
Alignment explanation
Indices: 18827--18971 Score: 224
Period size: 64 Copynumber: 2.4 Consensus size: 60
18817 AGGTAGATAT
*
18827 AAGGCTATTGCTATTCTATTAGTAGCTATCGCTATGGCTATTAAGAGCCTTAGATCCAAGATCC
1 AAGGCTATTGCTATTCTATTAGTAACTATCGCTATGGCTATTAAGAGCCTT--AT-C-AGATCC
18891 AAGGCTATTGCTATTCTATTAGTAACTATCGCTATGGCTATTAAGAGCC-T-T-AGATCC
1 AAGGCTATTGCTATTCTATTAGTAACTATCGCTATGGCTATTAAGAGCCTTATCAGATCC
18948 AAGGCTATTGCTATTCTATTAGTA
1 AAGGCTATTGCTATTCTATTAGTA
18972 GCCATATCCT
Statistics
Matches: 80, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
57 30 0.38
60 1 0.01
63 1 0.01
64 48 0.60
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (60 bp):
AAGGCTATTGCTATTCTATTAGTAACTATCGCTATGGCTATTAAGAGCCTTATCAGATCC
Left flanking sequence: Indices 18327 -- 18826
CACTATAGGGCTATTATCTATCAGATGGCACTATCTTAGTTGCCGTCTATCAGATGACAAGGGCT
ATTATCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTAATGCTATTCGATTAGTAGCT
ATATCCTATTGTGATTTAGAGCCTTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCT
ATTGTGATTTAGAGCCTTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGA
TTTAGAGTCTTAGATATAAGGCTATTGCTATCTATGCCATAATCATATCCTATTGTGATTTAGAG
TCTTAGATCCAAGGGTGGGTATATAACTGCGATAGGCACGGGCCATATCCTATCTGATGGCACTA
TCTTAGCTACTATCAAATAGGGCTATTGCTATCCGATCAGTAGCCATACACTATCAAGCTTTTAG
ATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATAT
Right flanking sequence: Indices 18972 -- 19471
GCCATATCCTATCGCATTTAGATTCTATTCAAGGCACGGGCCATATACTATCAAGCTATTATCTT
AGCAGGTAGATCCAAGGTTAACCCATAGTTTTACTCCGCGTAGCGAAGGGAAGGCACGGATCCAT
AAGAATATCCTAATAGGCGGATCCCTGACTAAGATAGTGTCATCTCGATAAATGCAACAGTGAGA
TCACTATTGGATTAGGCCCTACACTATAGACGGGGCATGGCCACTGCTCCGTCTATAGATCTTGT
TTCCTCTATAGACGGAGCAATCAGGAGGAGCCTTTATTAGGTCCAAAATAGTTCGGATCCATCTA
AGTTCAGGGAATATCTATAGCATAGAAGAGCTCGGATCCATCTAAGACAAATCAAGATAGAAGCA
ATAGAATACCATAGAGCCTACAACAGAGATCTAGCACTAATCACATCCCTATGAATTAGGATGTT
CCCTATGCATTAGAATCAGGGCCTGATCACTGTCACTGTGCCTTT
Found at i:19964 original size:32 final size:32
Alignment explanation
Indices: 19923--20119 Score: 394
Period size: 32 Copynumber: 6.2 Consensus size: 32
19913 CAACCTTTGA
19923 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
1 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
19955 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
1 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
19987 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
1 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
20019 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
1 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
20051 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
1 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
20083 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
1 GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
20115 GAAGG
1 GAAGG
20120 AGGGAGGCGC
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 165 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (32 bp):
GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
Left flanking sequence: Indices 19423 -- 19922
TGTTCCCTATGCATTAGAATCAGGGCCTGATCACTGTCACTGTGCCTTTTATTCACATTGATTAG
GATCAAGGATAGAATCGCTATGGCTATTCACATATTCACATTGATTAAGGTAGTGTCCAAGCATT
GATTAGATCAAGCCGGTTCGAAAGAATCTAAGCCGCCTCGCCTTCCCTTCGTTCCACTCAGGAAA
GGGATAACCTTAAAGAAAGAAGTCTCTCCAACTCGATAGAGCGCGCCTATTCCGGGCTGAGAGAC
AGGAGCTTCAGTTTACAAGGGCCGATACAGGGACGCATATTGAGCGCAGCTAAATGCCATATGCG
GCCCAATATCCTATCCCCTCCCTTGGAACGGTGTTATGCTACCAAAGCTGGGTGTTATGCTGGGT
GGAGCCAACGACCAAAGAAAGGGCACCCCCCGGATCAAAACACCACGGTAGGACCCCTATCAAAT
CAAATGGATGAAAGGCGGTGCGACCGGAGAGAAAACAACCTTTGA
Right flanking sequence: Indices 20120 -- 20619
AGGGAGGCGCCTGGAGTCGTTCAGGATCCAGCTCTGAGCCGGATGAACTGATTAGCATTACCGAC
TTGTTCCGGCCATTGCTTGAGGTGACGCAATTGATTACGCATCAAATAGCCGCCCCTTGATCGTG
ATCGAAACGGGGGGCTATATATCGATCGATATAGTGCCTTGTTCGTATCTCTCTTGACTATGTCG
TTTCCTTCCCCTTCCTGGGCATCGAGGCATATCTTGTATTTAATATTACTAGTTCCTCCTTGGGC
GTTCGTTATTTCGTTCATCATTGATCAATCTTTCTCTGTGCAATTGTCAGTTAGAGAATGAGGAT
GCTAGCATGAATGGATCACTTCCATGTTGGATAAAGTGACATTGCATTATATACATGTCTTGGAA
TTCGATAATAAGGTGACCTTATTGTATTATTGCGAAAAAAGATTTAGGCAATACCTTTCCTGAGC
GTAGCGAAGGGAAGGGGTTGGACCGGTCATTATTGATGGACGACG
Found at i:21137 original size:15 final size:15
Alignment explanation
Indices: 21113--21143 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
21103 GGTGAGCCAA
21113 GCGAACAACCCGCCC
1 GCGAACAACCCGCCC
*
21128 GCGAATAACCCGCCC
1 GCGAACAACCCGCCC
21143 G
1 G
21144 AACCAGCGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.48, G:0.23, T:0.03
Consensus pattern (15 bp):
GCGAACAACCCGCCC
Left flanking sequence: Indices 20613 -- 21112
GACGACGTATCGAATTTGCATCGTTCTTCGAGCGGGCGGATATGAACATGAATTCGGCTCGGTCG
GTGGAAGAGTAATCCTTTGTGCATTGGTGGCCGGGCTGGAAGGGGAATCCCGAGCGAGATCTGAG
ACTGAATACCGAGATGCTCGAAGACCCGGATATGAGTATTGCTTGTCCGATACTATATAGGTGGA
ACGGGTAGTTAAAAGACTGAAAACGTAAGGTCGATCTTGCCTCTGGCCTTCCACATTAAACATTC
GGTTCGTTCGGTCTTTGTTCTCTATGGTTTTTTTCTCCGACACTCGACTGATCAAATTCAGTTCG
AAGGGTCTTTCGGCCTGGAGCGCAGCGAGCGACGCGAAGAAGGACAAGTCAGCGAAGCCCCCCCG
TAATGTGATAAGTAGTTCGAGCGAAGCGAACGACTCATTATTTCTTTATTTAAGGGCGAAGAAGC
CCTTCTTTCACCAATATGCCACTTACTCTTGTTCAGGTGAGCCAA
Right flanking sequence: Indices 21144 -- 21643
AACCAGCGGGCACAGCGAAGGGCCTTCAACCAGACCTTCTAAACGAAGGTTTGTGGCTTTTTCCG
GAAATCACTCGAAGCCCTAGAGAAATTAAGTCTTTTACTCAATCAATCGATAGGGTCATAACCTG
AGAGATCGAATGGCGTTTTCTTTGACCGAGCGAATCGCTCGCTTCTACATACGGAATTTAACGTT
GAGGGGCACCAACACTGGATCTTGCTTTACCCCTGGCCGAGCTTGGGCTGCGGGGTATAATATAA
GGAGCAGGAGCAGCCGCCCAATGAATGGATAAATAGAGGGAGGCGGCAACCCACCCACCCCGGCC
GGAGAAGTCGGCGCTGCATTCATCAGAACGTAATGACCTTTAACAAGTGTTTTAATCGACGGTCA
CTTGTCTGGATCCGATCCCCCGCTGTATAAAGCCGGTGAGCTGGTGTATACCGGTCAGATCGAAG
CTGGAGGTTATGAAGGGTCATAGGGCCGCATTTGTTGCTGAAATG
Found at i:28240 original size:110 final size:104
Alignment explanation
Indices: 28013--28255 Score: 283
Period size: 110 Copynumber: 2.3 Consensus size: 104
28003 CTATCTAAAA
** * **
28013 AGAAACATTAAGCTAAGAAAAGCAAGATCACACTGTAGTGTGAAATCTTCTTAATAAAGGGTTAA
1 AGAAACATCGAGCTAAAAAAAGCAAGATCACACTGTAGTGTGAAATCTGATTAATAAAGGGTTAA
* * * *
28078 GAGGGCACTCTAATTGGATTTCTACTTTGATCTGGCTAT
66 GAGGGCACTCTAATTGGATCTCGACTTTGATCCGACTAT
* * *
28117 AGAACCATTGAGCTAAAAAAAGCAAGATCACACTGTAGTGTGAAATCCTGATTAA-GAAGGGTCA
1 AGAAACATCGAGCTAAAAAAAGCAAGATCACACTGTAGTGTGAAAT-CTGATTAATAAAGGG---
28181 CTATTAAGAGGGCACTCTAATTGGATCTCGACTTTGATCCGACTAT
62 ---TTAAGAGGGCACTCTAATTGGATCTCGACTTTGATCCGACTAT
*
28227 A-ACAACATCGAGCTAAAAAGAGCAAGATC
1 AGA-AACATCGAGCTAAAAAAAGCAAGATC
28256 CCGTCCTTCC
Statistics
Matches: 118, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
104 48 0.41
105 6 0.05
109 1 0.01
110 63 0.53
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (104 bp):
AGAAACATCGAGCTAAAAAAAGCAAGATCACACTGTAGTGTGAAATCTGATTAATAAAGGGTTAA
GAGGGCACTCTAATTGGATCTCGACTTTGATCCGACTAT
Left flanking sequence: Indices 27513 -- 28012
ATGAATTAGCGATTAGATCCTTGATTCTTTCGAACCGGCTTGGCTTGGACACTACCTTAATCAAT
GTGAATAGCCATAGTGATCAGGCCCTGATCCTGATTAATAGGATAGTGATTAGATTCTAATTGCG
ATAGTCTCTATACTATTCTATTGCTTCTATCTTGATTTGTCGTAGTTTAGATCCATAGTGATTAG
ATCCTTGATCCTAAGAAAGAAAGATTCAATAGCCATAGCGATTAGATCCTTGATCCTAATCAATT
CAATAAGAGGCACAGTGACAGTGATCAGGCCCTGATCCTGATTACTACAACAGAGATCTAGCAGT
GGCCATGCCCCGTCTATAGTGTAGGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCC
TTTTTAAGAAGAAATGAATAGTGCATAGTGTTCTCTCTTTTTTTTAGCTTGAAGTTTCATAGATT
ATTGAAGGCTATTGAAGAAGAGAGAACACTATGCACTATCTAAAA
Right flanking sequence: Indices 28256 -- 28755
CCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGAGGGATGTGC
CTTCTGCAGGATTGAGCTAAGAAAGGAAAGAGAACACTCTAGTGGAAAATCCTATTGTGTGACGT
TTTTCTATAAAATGTGATAAAAGAAGGGTCACTATGAAGATTGTGTGATTAAAGAGGGCACTATA
TAACTATGTGATTAAAAAGAGATCTCTATGGTGTCCCTCCCTTCGCTACGCGGAGTAAAACTATG
GGATGTGCCTTCCCTTCGCTACGCTCAGGAAAGGGTTAACCTTGGATCTAAGACTCTTAATAGCC
ATAGCGATAGCTACTAATAGAATAGCAATAGCCTTATATCTACCTATTAAGATAGTGCCATCTGA
TAGACAATAGCTAATAGAATAAGCTGATAGTGCATAGTATGGATCCGATCAGCCTATAGTGTAGA
CAGAAACCCATCTTAGAACATTATAGCATTTAAGAGTCTATATCC
Found at i:29087 original size:37 final size:32
Alignment explanation
Indices: 29006--29086 Score: 162
Period size: 32 Copynumber: 2.5 Consensus size: 32
28996 GTTTTACTCC
29006 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
29038 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
29070 GCGTAGCGAAGGGAAGG
1 GCGTAGCGAAGGGAAGG
29087 GGCCGGCCAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (32 bp):
GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
Left flanking sequence: Indices 28506 -- 29005
TAAAACTATGGGATGTGCCTTCCCTTCGCTACGCTCAGGAAAGGGTTAACCTTGGATCTAAGACT
CTTAATAGCCATAGCGATAGCTACTAATAGAATAGCAATAGCCTTATATCTACCTATTAAGATAG
TGCCATCTGATAGACAATAGCTAATAGAATAAGCTGATAGTGCATAGTATGGATCCGATCAGCCT
ATAGTGTAGACAGAAACCCATCTTAGAACATTATAGCATTTAAGAGTCTATATCCATATATCAGT
CCTAAGCAGGTGGATTTGGTATATGGCTCGTATCTATCTATGCGATATTCACCCTATCTTAGAAT
AGTGGCTGATCCCTGATAGTGCCATCTATGATTGTGCCTGTTGCAGAAAACCGGATGCCACATCC
ACCCTATAGAATGTATTCCCAATAGTGCCCTATAGTATGATCCCCAGTAGATCCCCACTGTTCCT
GAGCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
Right flanking sequence: Indices 29087 -- 29586
GGCCGGCCAGCATAGTGATGGCCTGGTGCCTGCTTATAGATTAGTGTATATAACCTGTGTCTTAG
AATAGTGGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATATATTGC
TTGTATCTCTTATGGGTGCAGTCTATATAGTATAGAGCAGTGCCCATCCTATTGCCACATCCACC
CTATCTTATTAGGATTCCCAATCCAGTTATTTCCCGATAGTGCCATCCACCTGAATCCAATAGAA
TAGTAATAGTTGCCCTATGGATTCGATCTATTCTCTATAGTAGATATCCACCCTTGGATCTAAGA
CTCTTAATAGCCATAGCGATAGCTACTAATAGAATAGCAATAGCCTTATATCTACCTATTAAGAT
AGTGCCATGACAATAGCTAATAGAATAAGCTGATAGGATATGGCTCGTATCTATAGATGCGATAT
TCACCCTATCTTAGAACATTAGAACATTAGAGCATATAGCATTTA
Found at i:29619 original size:21 final size:19
Alignment explanation
Indices: 29593--29634 Score: 66
Period size: 21 Copynumber: 2.1 Consensus size: 19
29583 TTTAACATCT
29593 TTTTTGTCTAGTTCTTTCGAA
1 TTTTTGTCTAGTT-TTT-GAA
29614 TTTTTGTCTAGTTTTTGAA
1 TTTTTGTCTAGTTTTTGAA
29633 TT
1 TT
29635 CTCTTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
20 3 0.14
21 13 0.62
ACGTcount: A:0.14, C:0.10, G:0.14, T:0.62
Consensus pattern (19 bp):
TTTTTGTCTAGTTTTTGAA
Left flanking sequence: Indices 29093 -- 29592
CCAGCATAGTGATGGCCTGGTGCCTGCTTATAGATTAGTGTATATAACCTGTGTCTTAGAATAGT
GGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATATATTGCTTGTAT
CTCTTATGGGTGCAGTCTATATAGTATAGAGCAGTGCCCATCCTATTGCCACATCCACCCTATCT
TATTAGGATTCCCAATCCAGTTATTTCCCGATAGTGCCATCCACCTGAATCCAATAGAATAGTAA
TAGTTGCCCTATGGATTCGATCTATTCTCTATAGTAGATATCCACCCTTGGATCTAAGACTCTTA
ATAGCCATAGCGATAGCTACTAATAGAATAGCAATAGCCTTATATCTACCTATTAAGATAGTGCC
ATGACAATAGCTAATAGAATAAGCTGATAGGATATGGCTCGTATCTATAGATGCGATATTCACCC
TATCTTAGAACATTAGAACATTAGAGCATATAGCATTTAACATCT
Right flanking sequence: Indices 29635 -- 30134
CTCTTTTTTCCCATCTTTATGAATACCTTCAGCCATTGACATGAACAATCAATTCGGAGCGCAGC
GAAGCAAAGGAACTCGCACGCTCGTACCTTCCCTTCGCGTAGCTCAGGTGACTCGCTGTTCGCTC
GTTTCTTTAGCCACGGTTCGCCCGACCACGAGGAATCCGCCGCCCACCTGGACCACTGCCCGGCC
AACAACCAACTCTTTCTATTCATTCTTCATAGGGCAGGGCTAACGAATGGAATAATGAGAATGAA
CGCGCCCCCTCATTAATATTAGTAATAATAAATAGGGCGATTCAACCACCCACCTGCCTCTATAT
ACACGATCAGATGCGCTTGCCCGAGCGAGCGAAAAAGCGCTTCAACTTCAGAATAGGATTCCCAA
TAAATAAGTATACTTCTTCGTATTTGTCGGTCGGGAAGAAGCGGAGAACAAACAACTTTTTCTTC
CTAAGAAGAATCAGTGCTGCTTGACCCTTCATGCAATTAATAGAT
Found at i:32203 original size:32 final size:32
Alignment explanation
Indices: 32160--32303 Score: 270
Period size: 32 Copynumber: 4.5 Consensus size: 32
32150 AGGTTAACCC
*
32160 CGTAGCAAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
32192 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
32224 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
32256 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
32288 CGTAGCGAAGGGAAGG
1 CGTAGCGAAGGGAAGG
32304 GGCCGGCCAG
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 109 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (32 bp):
CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
Left flanking sequence: Indices 31660 -- 32159
CTCAATCAGATTCTATTTGATGAATATTCCCCATATTTATTAATGGGCTCATGATTATAATAAAG
TAAATATTAAATAGCCAATAGTAATTAGATCCTAATTGCGATATATTACCTAAATCCTAATACTA
TGAATTCGATTCTAGATTCTAATAAATACTAATCCTATTAATTCTCTTCTATTCTATATAGATTC
CCTTAATATAATAAGAAAGACTAATATTAGAGTATGAATCCGATTCTTGGATCTAATAAAAGAGA
ATATGGCTCGTATCTTGGATCTAATCAATGCTCCGGGGATCCGATCTATTTTCTATAGTATAGAT
CCACCTGAATCCAATAACAACCGGCTAATATAGCAATTAGCCTCTTCTAATAGGATATGGCTCGT
ATCTTGGATATAATCAATGCTCCGTAATTATCTAATAACATAGTTATAGGCCTGATCTAATACTA
TTTAGAACCGGCTTAATCTCATAGCCATGCCCCGTAGGTTAACCC
Right flanking sequence: Indices 32304 -- 32803
GGCCGGCCAGCACAGTGATGGCCCGTGGCCTGGGGTGCAGTGTGCAACCCCATAATAAGAAGAGT
GGCCCGTGCCTTCCCTTCGTTCCACTCAGGAAAGGGATAACCTTACGCGGAGTAAAACTATGGGT
TAACCTGGATATATTGCTTGTATCTCCTTGTGGGTGCAGCCTATATAGTATAGAGCAGTGCCCAT
CCTCTTGCCACATCCACCCTATCTTCTTAGGATTCCCAAGACAATAGTGCAGTGGCACGGCTCCC
AGATCCCTTAATAGTGTCATCTCAATCACGTGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGG
TTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGG
GGGTCCTTTCCCGGATCCTTATTCATCAATTCTAGTGGTGGATTTGGTATTAAGGCTCCTATAAA
TGTTCTTAGCCGGTTCGAAAGAATCAATCATCGAATTGCTATGGC
Found at i:32704 original size:32 final size:32
Alignment explanation
Indices: 32601--32692 Score: 184
Period size: 32 Copynumber: 2.9 Consensus size: 32
32591 ACGTGGTAAA
32601 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
32633 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
32665 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
32693 GGGGTCCTTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.22, C:0.23, G:0.33, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 32101 -- 32600
CTGATCTAATACTATTTAGAACCGGCTTAATCTCATAGCCATGCCCCGTAGGTTAACCCCGTAGC
AAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCG
AAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGA
AGGGAAGGGGCCGGCCAGCACAGTGATGGCCCGTGGCCTGGGGTGCAGTGTGCAACCCCATAATA
AGAAGAGTGGCCCGTGCCTTCCCTTCGTTCCACTCAGGAAAGGGATAACCTTACGCGGAGTAAAA
CTATGGGTTAACCTGGATATATTGCTTGTATCTCCTTGTGGGTGCAGCCTATATAGTATAGAGCA
GTGCCCATCCTCTTGCCACATCCACCCTATCTTCTTAGGATTCCCAAGACAATAGTGCAGTGGCA
CGGCTCCCAGATCCCTTAATAGTGTCATCTCAATCACGTGGTAAA
Right flanking sequence: Indices 32693 -- 33192
GGGGTCCTTTCCCGGATCCTTATTCATCAATTCTAGTGGTGGATTTGGTATTAAGGCTCCTATAA
ATGTTCTTAGCCGGTTCGAAAGAATCAATCATCGAATTGCTATGGCATTTAGCATTTCTTAGGAT
CAAGGATCTGATCACTATTCATCTAAGACAAATCAAGATAGAAGCAATCTATACCATAGGGCCTA
CAACAGAGATCTAGCACTAATCACATCCCTATGAATTAGGATGTTCCCTATGCATCAGGATCAGG
GCCTGATCACTATGGCTATTCACATTGATTAGGATCAAGGATCTAAAATTCATAGTTGCTATGGC
ATTTATATCCAAGCCGGTTAGAAAGATCAAGATCAGGGCCTGATCACTATCGCTATGGCTATTGA
ATATTCACATTGATTAGAATCAAGGATCTAATCGCTAATTCATAGTTGCTATGGCATTTAGATCA
GGCCTATAACTATCTCGAACCGGATCATGAGCCTATTCATATAGC
Found at i:37574 original size:32 final size:32
Alignment explanation
Indices: 37531--37894 Score: 341
Period size: 32 Copynumber: 10.5 Consensus size: 32
37521 AGCCATGCCC
*
37531 CGTAGCAAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
37563 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
37595 CGTAGCGAAGGGAAGGGCCTGATCCAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAA------G-------GTTATCCCTTTCCTGAG
*
37640 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
** *** * *
37672 CGTAGCGAAGGGAAGGGGATCCCACACTATTAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTC-CTGAG
** * * *
37705 TTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCTGAG
1 -CGTA----GCGAAGGGAA--G--GT-TAT--CC-CT-TTCCTGAG
37751 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
37783 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
37815 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
37847 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
37879 CGTAGCGAAGGGAAGG
1 CGTAGCGAAGGGAAGG
37895 GGCCGGCCAG
Statistics
Matches: 277, Mismatches: 27, Indels: 56
0.77 0.08 0.16
Matches are distributed among these distances:
32 201 0.73
33 5 0.02
34 4 0.01
36 2 0.01
37 2 0.01
38 9 0.03
39 2 0.01
40 1 0.00
41 8 0.03
42 1 0.00
43 3 0.01
45 34 0.12
46 4 0.01
47 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (32 bp):
CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
Left flanking sequence: Indices 37031 -- 37530
GGAGTTCAGGATTTATCATGGGTGATAGGTTTGGGTGGGGCAAACCTAATATGAATAGGCTCATG
ATCCGGTTCGAGAGCCGGCCACTCTAAGAAATGAATTAGATCCTAGATTCTAACATAGTTATAGG
CCTGATCTAATCAATGCTTGGACACTACCTTAATCAATATTGCAATTCTAATAGTGATTAGATCC
TTGATCCTAATCAATACGTAATAATCAGGTGATGATTCTAATTCATAGGGAACATCCTAATTCAT
AGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCTCTATGGTATTCTATTGCTTCTATCTTGAT
TTGTATTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGATCCGAAC
TATTTTGGACCTAATAAAGGCTCCTATCTAGGCCTGAATACTATTCTATAGTTGTAGGCCTGGCC
TGAATGCTCCGTCTATACCGTAGGCTCAATGCCATAGCCATGCCC
Right flanking sequence: Indices 37895 -- 38394
GGCCGGCCAGCATAGTGATGGCCTGGTGCCTGCTTATAGATTCGTATATATCCACCTTATCTTCA
GGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGC
CCCACCACTATTGGCAATAGTGCAGTGGCCGGCCGGATCCTTATTCATCAATTCTAGTGGTGGAT
CTGGTATCTCGCTCGTATTCCCCCGCCTGTAGTGTAGACATCCACCCGATCTTAGAACAGTGGCC
TGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCAT
TTGCATGGTATATGTCTTGGTTTAGTTTTTGAATCTTGAAAGGATTCCCATATTGATGAAGATTC
TCATAGCATTGAATATTCCCCTATTGATGAAGATTCCCATATTGATTAATAAGTGCAGCAAGTAA
GCTCTGGGGAGTGAGGTAGGATGGGATAGACGCCCACCAGTGTTG
Found at i:37670 original size:77 final size:77
Alignment explanation
Indices: 37543--37688 Score: 292
Period size: 77 Copynumber: 1.9 Consensus size: 77
37533 TAGCAAAGGG
37543 AAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
37608 AGGGCCTGATCC
66 AGGGCCTGATCC
37620 AAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
37685 AGGG
66 AGGG
37689 GATCCCACAC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 69 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (77 bp):
AAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
AGGGCCTGATCC
Left flanking sequence: Indices 37043 -- 37542
TTATCATGGGTGATAGGTTTGGGTGGGGCAAACCTAATATGAATAGGCTCATGATCCGGTTCGAG
AGCCGGCCACTCTAAGAAATGAATTAGATCCTAGATTCTAACATAGTTATAGGCCTGATCTAATC
AATGCTTGGACACTACCTTAATCAATATTGCAATTCTAATAGTGATTAGATCCTTGATCCTAATC
AATACGTAATAATCAGGTGATGATTCTAATTCATAGGGAACATCCTAATTCATAGGGATGTGATT
AGTGCTAGATCTCTGTTGTAGGCTCTATGGTATTCTATTGCTTCTATCTTGATTTGTATTAGATG
GATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGATCCGAACTATTTTGGACCT
AATAAAGGCTCCTATCTAGGCCTGAATACTATTCTATAGTTGTAGGCCTGGCCTGAATGCTCCGT
CTATACCGTAGGCTCAATGCCATAGCCATGCCCCGTAGCAAAGGG
Right flanking sequence: Indices 37689 -- 38188
GATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCTGAGCGT
AGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTA
GCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAG
CGAAGGGAAGGGGCCGGCCAGCATAGTGATGGCCTGGTGCCTGCTTATAGATTCGTATATATCCA
CCTTATCTTCAGGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATAT
ACACTATGGGCCCCACCACTATTGGCAATAGTGCAGTGGCCGGCCGGATCCTTATTCATCAATTC
TAGTGGTGGATCTGGTATCTCGCTCGTATTCCCCCGCCTGTAGTGTAGACATCCACCCGATCTTA
GAACAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGA
Found at i:38289 original size:18 final size:18
Alignment explanation
Indices: 38262--38330 Score: 79
Period size: 18 Copynumber: 3.8 Consensus size: 18
38252 ATCTTGAAAG
38262 GATTCCCATATTGATGAA
1 GATTCCCATATTGATGAA
*
38280 GATTCTCATA--GCATTGAA
1 GATTCCCATATTG-A-TGAA
* *
38298 TATTCCCCTATTGATGAA
1 GATTCCCATATTGATGAA
38316 GATTCCCATATTGAT
1 GATTCCCATATTGAT
38331 TAATAAGTGC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
16 1 0.02
17 1 0.02
18 37 0.90
19 1 0.02
20 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (18 bp):
GATTCCCATATTGATGAA
Left flanking sequence: Indices 37762 -- 38261
GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
AGGGGCCGGCCAGCATAGTGATGGCCTGGTGCCTGCTTATAGATTCGTATATATCCACCTTATCT
TCAGGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATG
GGCCCCACCACTATTGGCAATAGTGCAGTGGCCGGCCGGATCCTTATTCATCAATTCTAGTGGTG
GATCTGGTATCTCGCTCGTATTCCCCCGCCTGTAGTGTAGACATCCACCCGATCTTAGAACAGTG
GCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAG
CATTTGCATGGTATATGTCTTGGTTTAGTTTTTGAATCTTGAAAG
Right flanking sequence: Indices 38331 -- 38830
TAATAAGTGCAGCAAGTAAGCTCTGGGGAGTGAGGTAGGATGGGATAGACGCCCACCAGTGTTGC
GTGGCAATCCGATCGATGATTCGGTGGGAGGATTTCCAGGCGGTGAGGGAGGGGCGGCCAGCAGG
AGAGAGGGGACGGAGCAATGAGAAACTCTTGGCAATTTCGGGAGGAATAACTATTCTCCAGAGCT
ATGCGGGCAGTAATTTGTCGTGGGTGGAACAACCGCCCAGCCACCTTCATGAATCATCATAAACA
ATATTATGATGCACGTTACTAATAAGAGTCATCGTAGATATCTTTCCTTTTCAATAATTAATAAG
GCCTCTGTTTGCCCTCCCTTCTATCCGTTCGGAGAAGTGCTGCTTCGGGGGCTTCTCCCCGTGAA
GTGGGAAGCCGAACTTATCTGGACTCCTGAGCTGTTTCAGGGGAATCCCTTTCCTGAGCGTAGCG
AAGGGAAGGGGTTCGGTCCGAGAATAACTAATTGAATCGACTTGG
Found at i:41408 original size:18 final size:18
Alignment explanation
Indices: 41381--41445 Score: 96
Period size: 18 Copynumber: 3.6 Consensus size: 18
41371 TCGTTGACCA
41381 TTCATCAATATGGGAATC
1 TTCATCAATATGGGAATC
*
41399 TTCATAAATA-GGAGAATC
1 TTCATCAATATGG-GAATC
41417 TTCATCAATATGGGAATC
1 TTCATCAATATGGGAATC
*
41435 TTAATCAATAT
1 TTCATCAATAT
41446 AGAATCTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 2 0.05
18 38 0.90
19 2 0.05
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (18 bp):
TTCATCAATATGGGAATC
Left flanking sequence: Indices 40881 -- 41380
CACCCCTATATGTGTTCTTCTTATTCATTATTCATTCTTATTACAGGTATTATGAGGTAGATTTC
TATGACGACAAATTCGTTCAAGAACAACTATGACCTTCTCTTTCAAGGCCCCCTTTTTCTTCATA
GAATTGCGTATCGCGACGGCATGAATGATTCGGGAAATCTATTCCATTACTACATGACCAGCCAG
CCTCTTGCTAAAAACGATTGTTCGCCGGCCGCACTTGCCTTGCCCCTTGTGGAGTCCTCTTTCCG
CTCCGGTGTAAGCCTGGCAAATCCTTAGCCAGCCTTCTCCCCTGGCTCCTTACCCACACCACCTT
TATGTAAGAATAAGGATCAAATAGGGGGAACGGGCCCAGCTTTCGGATAACAACTCTGGAGGAAA
GTCAAAAGAATGGGCACGTCGAGGAAAGACAAGGGTCTAATACTCCTCCTTGTTCAGCCAGTTCC
TTCGATGCCATTGTTCGGTCCATCAAAAGGTTAAGTCGTTGACCA
Right flanking sequence: Indices 41446 -- 41945
AGAATCTTTTCAAGATTCAAAAACTAGACAAAAATTCGAATCGAAAAAACTAGACCAAGACATAT
ACCATGCAAATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATG
GCCGGGCCAGGCCACTGTTCTAAGATCGGGTGGATGTCTACACTACAGGCGGGGGGATACGAGCG
AGATACCAGATCCACCACTAGAATTGATGAATAAGGATCCGGCCGGCCACTGCACTATTGCCAAT
AGTGGTGGGGCCCATAGTGTATATGCATATACAACATGCCCTTCCCTTCGTTACACTCAGGAAAG
GGATAACCCTGAAGATAAGGTGGATATATACGAATCTATAAGCAGGCACCAGGCCATCACTATGC
TGGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAA
AGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTC
Found at i:41428 original size:36 final size:35
Alignment explanation
Indices: 41381--41453 Score: 110
Period size: 36 Copynumber: 2.1 Consensus size: 35
41371 TCGTTGACCA
*
41381 TTCATCAATATGGGAATCTTCATAAATAGGAGAATC
1 TTCATCAATATGGGAATCTTAATAAATA-GAGAATC
* *
41417 TTCATCAATATGGGAATCTTAATCAATATAGAATC
1 TTCATCAATATGGGAATCTTAATAAATAGAGAATC
41452 TT
1 TT
41454 TTCAAGATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 8 0.24
36 26 0.76
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCATCAATATGGGAATCTTAATAAATAGAGAATC
Left flanking sequence: Indices 40881 -- 41380
CACCCCTATATGTGTTCTTCTTATTCATTATTCATTCTTATTACAGGTATTATGAGGTAGATTTC
TATGACGACAAATTCGTTCAAGAACAACTATGACCTTCTCTTTCAAGGCCCCCTTTTTCTTCATA
GAATTGCGTATCGCGACGGCATGAATGATTCGGGAAATCTATTCCATTACTACATGACCAGCCAG
CCTCTTGCTAAAAACGATTGTTCGCCGGCCGCACTTGCCTTGCCCCTTGTGGAGTCCTCTTTCCG
CTCCGGTGTAAGCCTGGCAAATCCTTAGCCAGCCTTCTCCCCTGGCTCCTTACCCACACCACCTT
TATGTAAGAATAAGGATCAAATAGGGGGAACGGGCCCAGCTTTCGGATAACAACTCTGGAGGAAA
GTCAAAAGAATGGGCACGTCGAGGAAAGACAAGGGTCTAATACTCCTCCTTGTTCAGCCAGTTCC
TTCGATGCCATTGTTCGGTCCATCAAAAGGTTAAGTCGTTGACCA
Right flanking sequence: Indices 41454 -- 41953
TTCAAGATTCAAAAACTAGACAAAAATTCGAATCGAAAAAACTAGACCAAGACATATACCATGCA
AATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCC
AGGCCACTGTTCTAAGATCGGGTGGATGTCTACACTACAGGCGGGGGGATACGAGCGAGATACCA
GATCCACCACTAGAATTGATGAATAAGGATCCGGCCGGCCACTGCACTATTGCCAATAGTGGTGG
GGCCCATAGTGTATATGCATATACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATAACC
CTGAAGATAAGGTGGATATATACGAATCTATAAGCAGGCACCAGGCCATCACTATGCTGGCCGGC
CCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTTGCT
Found at i:41886 original size:32 final size:32
Alignment explanation
Indices: 41845--41956 Score: 215
Period size: 32 Copynumber: 3.5 Consensus size: 32
41835 CTGGCCGGCC
41845 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
41877 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
41909 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
41941 CCTTCCCTTTGCTACG
1 CCTTCCCTTCGCTACG
41957 GGGCATGGCT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 79 1.00
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.24
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 41345 -- 41844
ATTGTTCGGTCCATCAAAAGGTTAAGTCGTTGACCATTCATCAATATGGGAATCTTCATAAATAG
GAGAATCTTCATCAATATGGGAATCTTAATCAATATAGAATCTTTTCAAGATTCAAAAACTAGAC
AAAAATTCGAATCGAAAAAACTAGACCAAGACATATACCATGCAAATGCTCTTGAAGAAAGAAGA
TAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTGTTCTAAGATCGG
GTGGATGTCTACACTACAGGCGGGGGGATACGAGCGAGATACCAGATCCACCACTAGAATTGATG
AATAAGGATCCGGCCGGCCACTGCACTATTGCCAATAGTGGTGGGGCCCATAGTGTATATGCATA
TACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATAACCCTGAAGATAAGGTGGATATAT
ACGAATCTATAAGCAGGCACCAGGCCATCACTATGCTGGCCGGCC
Right flanking sequence: Indices 41957 -- 42456
GGGCATGGCTATGGCATTGAGCCTACGGTATAGACGGAGCATTCAGGCCAGGCCTACAACTATAG
AATAGTATTCAGGCCTAGATAGGAGCCTTTCTTATCCAAAAGAGTTCGGATCCTTATAGAATAGG
CGGATCCCACCGTGTTTTCCTATTAATCAGGATCAGGGCCTGATCACTATGGCTATTCACATATT
CACATCCCTTAGGATCTAATCGCTAATTCATAGTTGCTATGGCATTTAGATCCAAGCCGGTTAGA
AAGATCAAGCATCTATTAGAATCAATCCTCTAATGGCTATTTAATATTTCTTTCTTAGGATCAAG
GATCTGATCACTATTCATCTAAGACAAATCAAGATAGAAGCAATCTATACCATAGGGCCTACAAC
AGAGATCTAGCACTAATCACATCCCTATGAATTAGGATGTTCCCTATGCATCAGGATCAGGGCCT
GATCACTGTCACTGTGCCTTTTATTGAATTGATTCGAATCAAGGA
Found at i:42570 original size:40 final size:40
Alignment explanation
Indices: 42526--42604 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
42516 ATCAAGCATC
* * *
42526 GATTAGAATCCAGGGCCTGATCACTATGGCTATTCACATT
1 GATTAGAATCAAGGACCTAATCACTATGGCTATTCACATT
* * *
42566 GATTAGGATCAAGGATCTAATCGCTATGGCTATTCACAT
1 GATTAGAATCAAGGACCTAATCACTATGGCTATTCACAT
42605 ATTTCTTTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (40 bp):
GATTAGAATCAAGGACCTAATCACTATGGCTATTCACATT
Left flanking sequence: Indices 42026 -- 42525
GTATTCAGGCCTAGATAGGAGCCTTTCTTATCCAAAAGAGTTCGGATCCTTATAGAATAGGCGGA
TCCCACCGTGTTTTCCTATTAATCAGGATCAGGGCCTGATCACTATGGCTATTCACATATTCACA
TCCCTTAGGATCTAATCGCTAATTCATAGTTGCTATGGCATTTAGATCCAAGCCGGTTAGAAAGA
TCAAGCATCTATTAGAATCAATCCTCTAATGGCTATTTAATATTTCTTTCTTAGGATCAAGGATC
TGATCACTATTCATCTAAGACAAATCAAGATAGAAGCAATCTATACCATAGGGCCTACAACAGAG
ATCTAGCACTAATCACATCCCTATGAATTAGGATGTTCCCTATGCATCAGGATCAGGGCCTGATC
ACTGTCACTGTGCCTTTTATTGAATTGATTCGAATCAAGGATCTAATCGCTATGGCTATTCACAT
ATTCACATTGATTAAGATCCAAGCCGGTTATAAAGATCAAGCATC
Right flanking sequence: Indices 42605 -- 43104
ATTTCTTTATTAGGATCAAGAATCTAATTAATAGGATGTGCGTATTGATTAGAATCAAGGATCTA
ATCGCTATGGCTATTCACATATTCACATTGATTAGGATCAAGGATCTATGGCATTTAATATGATT
AGTCTTGATTAGAATCAAGGATCTAATCACTATTGAATCTTCTTAGTATATAGTAGAATCATCAC
CTGATTCATCTAAGACAAATCAAGATAGAAGCAATCTATACCATAGGGCCTACAACAGAGATCTA
GCACTAATCACATCCCTATGAATTAGGATGTTCCCTATGCATCAGGATCAGGGCCTGATCACTAT
GGCTATTCACATATTCACATTGATTAGGATCAAGGATCTAATCGCTATGGCTATTCACATATTCA
CATTGATTAAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCATCACCTGATGGCTA
TTGAATATTCACATTGATTAGGATCAAGGATCTAATCACTATGTC
Found at i:45829 original size:32 final size:32
Alignment explanation
Indices: 45788--45881 Score: 188
Period size: 32 Copynumber: 2.9 Consensus size: 32
45778 AGGGCCCGCC
45788 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
45820 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
45852 CCTTCCCTTCGCTACGCTCAGGAAAGGGAT
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGAT
45882 TCCCCTGCCG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 45288 -- 45787
TTCCCAGCCCTCCCTCCTTTGTTCGTAAAGCCGCCTACTCGTGCTCGTAGCCCGACCGAATAGAG
CTTCTTTCTGGTCTGAATCTTTCCTTTTTATTCAGGGCCTTATCAACGGAAAAACGTCGAGAAGT
CGTCCGAAATGAAGAACGTACTAAAAAGAAAGTACCGGTTAGTACGTTCTTCATTCTAAAAATAA
GAAGTGCGTGCCGAGTGATACGTGAATTGTTTAGTAGTGCTTCGCCACTACGCGGAGCGAGAAAG
TGGAGCTGGCGGAAATAGCTTAATGGTAGAGTATAGCCTTGCCAAGGCTGAGGTTGAGGGTTCAA
GTCCCTTTTCCCGCTCCTGAATCAGCTCCGTCGTTCGCAACAGCTGCGTTGTCATCATTACTAGC
AATCTTAAGACAAAGCTTATTCAACTCTGGAGTCAGTATTGATCCGGTTCTTTAGAGCATTGCCC
GAAAGAGAGCGATCAGGGAGAGGGAGATTGGCCGGAGGGCCCGCC
Right flanking sequence: Indices 45882 -- 46381
TCCCCTGCCGAAAGGTAAGAGTGTAGGGACAGGTCCGGGTTTTGACCGGAGGTCTGTTACTACTC
CTTCGGTGATCAGCGAGAGAGTGCAATGGGTTAAGAGCCAATCGCCGGGGAATCTTCGTGTTTTC
TCCCCAGTATTGTGCTATTTAGAGGAGTCATGTTCGTACGAGCGTGACCTGGGGGTGCAATGGGT
TCAGAAGGCATTACTCGTTCCTATCCGCCCCCCTAAATCGAGAATGACCGACCGTGCTGGTATAC
CGGTCAGAAGTTGAGACTCACCCACTATATAGAAATGCTCGATGACACGCGGCTAGCTTTTTTGT
TGTATCCGCGATCCATCCATGGAGTCCAGGTCTGACAACTGACAAATTGAGGCCGGGCCGCTTCA
TCGGAGGAATGGGGTTCGAGAATCCTAATTTTCCACTCTTTCTGCCCCTATTCATTACTAGGGCG
AGCTCGAAGAGGCTCCTACTGATAGCTCGCCGCATTTCTTTCTTT
Found at i:49241 original size:32 final size:32
Alignment explanation
Indices: 49200--49451 Score: 504
Period size: 32 Copynumber: 7.9 Consensus size: 32
49190 CAGAGGTAAA
49200 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
49232 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
49264 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
49296 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
49328 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
49360 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
49392 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
49424 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
49452 GGGAGTTGCC
Statistics
Matches: 220, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 220 1.00
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 48700 -- 49199
GCAATACCAATCTACTTTAGTAGATCATATGGATGTAGAAAAAGCTTCTGATTTGGAAAACGAAT
CGGGATTGGAAACATTTATTTTCCATTTCCATTTACCCAGTTCATATCTTTGTTTCGTGTGTTCC
CCGATCTGATGAGGGGGTTTCTCAGGTTATCCCTTTCCTGAGCGTAGCGAAGGAAAGGAGCGGCA
AATTCGATCTCTTCAATCTCGGGATACCACCTCAATAACTGGTACCGACCAGAGAGTCGAATGGG
TCGGGAACGGAATAAACAGTCTAAGGCCGGGTTGGACAACATAATGGAAGATCGGGAACGATACG
CATCTTTTTTTAGAACTGAGAATTTGCCCCTTTCAATTATGTCTCGTCCATTTCCTACATTTCGA
ATTTATAACATAGATTTGTTCCGAGAGCCAGTCTTTGCCTGGGGTTAGTTAGGTGGCGGAGAAAA
CGTCGTCACAGGTTGTGTAACCTGTCTGATGGGTCCAGAGGTAAA
Right flanking sequence: Indices 49452 -- 49951
GGGAGTTGCCTATTTGTTCAAGAGGCGCTCATCCCTATTCTGGTAGATTGGTGGGGTAGCGGCGG
CGACAATTATATGAATGAGAGGGGGCACTACTAGATCTGGCCAAAGAGAGTGCACTTCAAAACAT
ATTGAAGGCTGCAGTCTATAAAGAACTCTATTTCTAATATGTGATTAAAAAAGAGTTAAGTGCGA
AAGAGTGCACTATTGGGTTTAAATATTCGTACCCTACGGACCGGAAGACTCTTCCACACTGTTTG
CTCGGGAGGGGGGGCGGAAGCCTGATCCGGGGATGTGGTAGTAGGGGGGTTATACCATTTCCTAA
CCCAAACACATGATTCTGGTTGCCCACATCCTTTGGATACAAATGAGATTCGAAAATTACGAACA
GGATTCGGTCGGGCCAATACTCTTATGTATGCCGCATCAGACTCCCCTGCTGGCCCCCCCACTAG
GAACCTTCCTAATTCGAGCCCTTCCTAATCGGATTAAGGTGAACC
Found at i:60237 original size:32 final size:32
Alignment explanation
Indices: 60196--60323 Score: 247
Period size: 32 Copynumber: 4.0 Consensus size: 32
60186 GCCTTACACA
60196 TCCCTTCGCTACGCTCAGGAAAGGGATAACCT
1 TCCCTTCGCTACGCTCAGGAAAGGGATAACCT
60228 TCCCTTCGCTACGCTCAGGAAAGGGATAACCT
1 TCCCTTCGCTACGCTCAGGAAAGGGATAACCT
60260 TCCCTTCGCTACGCTCAGGAAAGGGATAACCT
1 TCCCTTCGCTACGCTCAGGAAAGGGATAACCT
*
60292 TCCCTTCGCTACGCTCAGGAAAGGTATAACCT
1 TCCCTTCGCTACGCTCAGGAAAGGGATAACCT
60324 CTGTTTTTCA
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 95 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (32 bp):
TCCCTTCGCTACGCTCAGGAAAGGGATAACCT
Left flanking sequence: Indices 59696 -- 60195
TGGCCTCTTATTATCCTTTCTCCATTATCGACCACTAAGCATTTCTAACTCGGTTGCCTAGAGAA
TAAGAAACCGGTCTATCCCTGTCGGGTAAATTACTGATCCGTCCGGTTATTGTTTGATCTATAGT
GAGCCAATCCCTGCTTCTCTCCTGTTCTATCTACTCTAGCCCTACTGGGATTGGCGAGCTATAGA
TCTAACTATAGCTCGGCAATCCTAGTAAGGTTATTGCACTTATCACACTAGCACCTAGACCCCAC
ATCTCCTGCATCCGGGGGGTACTCCCTCCTTCCTTCTTTTGAGCCAGCGCTCCATCCTCCCCCTG
CGCTTGTTCCTCCTCGTGCGGCTTGGGCTTTGCCAGCACTGTCGTATGCATCATCAAGAGTGAGT
GCGCGGGTAATTAGTGAGTACGCCTATGAAGTAAGCAAGTGAGTCTGTAGGCCCTGGCGGGCGGG
CCTGACTCCCGTCGACCTACGCTCCCCTGCCTTCAGCCTTACACA
Right flanking sequence: Indices 60324 -- 60823
CTGTTTTTCATACCTTTAGCTTTGATTTAAAACCCATAGCTTTTACTACTCTTATTTTTCCATCC
ACTGATCTGATGCCTCGTATATTCTATTTTACGCAAGAAGATTGAATAAAAGACGCTAGAAGATT
GAATAAAAGAAGTTTGAACGGGCTTGGACCATGTCTCCCGAACGATCTCAGTACATATGGCGCAA
GACGATTTCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTTACCGTAGTGCCCGGA
GAAAACCATCTTGATTGATGAACGAATAGAGAGGGCACTCTAATTTCGGTCAACCCGGATCTGAA
TGCTATTCACCAATATTATAACAAAGATCTAACAATCTATAAATGAGTCTATTAAGATCTTTATG
TATCTGGGGTCCAGATATTCCTAAAAAGGAGACTCGGGTCTCCACGCGAAAAAGATCGCTGCGCT
TCACTATAAAGGGCCTTTACTCGTTCTAGGGTTATCCCTTTCCTG
Found at i:60449 original size:22 final size:22
Alignment explanation
Indices: 60419--60463 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
60409 ATTCTATTTT
60419 ACGCAAGAAGATTGAATAAAAG
1 ACGCAAGAAGATTGAATAAAAG
*
60441 ACGCTAGAAGATTGAATAAAAG
1 ACGCAAGAAGATTGAATAAAAG
60463 A
1 A
60464 AGTTTGAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.09, G:0.22, T:0.16
Consensus pattern (22 bp):
ACGCAAGAAGATTGAATAAAAG
Left flanking sequence: Indices 59919 -- 60418
GGTTATTGCACTTATCACACTAGCACCTAGACCCCACATCTCCTGCATCCGGGGGGTACTCCCTC
CTTCCTTCTTTTGAGCCAGCGCTCCATCCTCCCCCTGCGCTTGTTCCTCCTCGTGCGGCTTGGGC
TTTGCCAGCACTGTCGTATGCATCATCAAGAGTGAGTGCGCGGGTAATTAGTGAGTACGCCTATG
AAGTAAGCAAGTGAGTCTGTAGGCCCTGGCGGGCGGGCCTGACTCCCGTCGACCTACGCTCCCCT
GCCTTCAGCCTTACACATCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTC
AGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCA
GGAAAGGTATAACCTCTGTTTTTCATACCTTTAGCTTTGATTTAAAACCCATAGCTTTTACTACT
CTTATTTTTCCATCCACTGATCTGATGCCTCGTATATTCTATTTT
Right flanking sequence: Indices 60464 -- 60963
AGTTTGAACGGGCTTGGACCATGTCTCCCGAACGATCTCAGTACATATGGCGCAAGACGATTTCA
CATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTTACCGTAGTGCCCGGAGAAAACCATC
TTGATTGATGAACGAATAGAGAGGGCACTCTAATTTCGGTCAACCCGGATCTGAATGCTATTCAC
CAATATTATAACAAAGATCTAACAATCTATAAATGAGTCTATTAAGATCTTTATGTATCTGGGGT
CCAGATATTCCTAAAAAGGAGACTCGGGTCTCCACGCGAAAAAGATCGCTGCGCTTCACTATAAA
GGGCCTTTACTCGTTCTAGGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGCCCCTTCACTC
GTTCTGGATCCTTATTGATCCGAGGGAGAACAAACTGCTCCCCTATCAGATCGAACCGGAAGTGG
CCGTAGCTTTTCGGAACTATGAATTTGAGGGACCAAAGAGGTGGG
Found at i:66364 original size:32 final size:32
Alignment explanation
Indices: 66323--66390 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
66313 CCAATCTCTT
66323 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
66355 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
66387 CCTT
1 CCTT
66391 AAATTGAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 65823 -- 66322
GTAACAACTCTCCCAAAGCGTGAGTAAAGAGGGCACTATTGTTAGTGAGTAAGTAATCAGTTTCT
GTTGTAGCCGATGCAGCGGGCAATGTAAGTGTGAATCGTGCTTACTCGGACGCCTATCCAAGGAG
CACCCACCTGCGGTGAGCTGTACAGATACGGGCACACTACTCTTTGGCCCTACCAGGAAAGGAAT
GAATGCGATCTGGGACACGTTGCCCCTACTTGCTCGCGCGTCTCATCCCTTATTTCATTTCTTCA
TTGATTGAAGAGGTCGCCCTATTCAATGGTAAATAAAGGATTTATGGCCGCTGGGCGTTTAAAAC
TCAACAAGGTCGGAGGAGCCCGCCGGCTGCTGCTATGAACAAGCAAGATCGAACGATAAACGATC
ACCCTTTTCTCTCAGTGATTCATAGAAGACCCATACAAGGAACGTACAAGAACCCGCAGAAAACA
CTTTGATAAGGACGAGAAAGCTTAATCCATATTCTCCAATCTCTT
Right flanking sequence: Indices 66391 -- 66890
AAATTGAACAAATAGAATAGTAGGAAGGGCCTCGCGACGTTTTCTAGGGCGGTTACGCTAGAGTA
CTACAGGGTAAGTAGGCGGCGTTCGCTAACGGAAGTCACTTGTTCCGGCGGTGTTCCTCGGAACG
CGAGATATGGACTAATCTCATGATACCGAATGCAATAACCAGCTTCTAGGCGGGCATCGAGCTTC
CAATTTCCGTGCCTTTCGGACCAATTCTCTTTCTTTTTCAATAACAACAATAGTTGACTCTTTTT
TAATCACATATTCTAAATAGAGTTCTTTATAGACTGCAGCCTTCAATATGTTTTTTAGTGCCATC
TCTTTCTTTTTCACTTTCAATAGGTTATACCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTT
TCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTT
CCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCG
Found at i:66773 original size:32 final size:32
Alignment explanation
Indices: 66737--67187 Score: 893
Period size: 32 Copynumber: 14.1 Consensus size: 32
66727 CACTTTCAAT
*
66737 AGGTTATACCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
66769 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
66801 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
66833 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
66865 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
66897 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
66929 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
66961 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
66993 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
67025 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
67057 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
67089 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
67121 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
67153 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
67185 AGG
1 AGG
67188 GGCGGGGGCG
Statistics
Matches: 418, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 418 1.00
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (32 bp):
AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
Left flanking sequence: Indices 66237 -- 66736
GAAGACCCATACAAGGAACGTACAAGAACCCGCAGAAAACACTTTGATAAGGACGAGAAAGCTTA
ATCCATATTCTCCAATCTCTTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGC
TACGCTCAGGAAAGGGATAACCTTAAATTGAACAAATAGAATAGTAGGAAGGGCCTCGCGACGTT
TTCTAGGGCGGTTACGCTAGAGTACTACAGGGTAAGTAGGCGGCGTTCGCTAACGGAAGTCACTT
GTTCCGGCGGTGTTCCTCGGAACGCGAGATATGGACTAATCTCATGATACCGAATGCAATAACCA
GCTTCTAGGCGGGCATCGAGCTTCCAATTTCCGTGCCTTTCGGACCAATTCTCTTTCTTTTTCAA
TAACAACAATAGTTGACTCTTTTTTAATCACATATTCTAAATAGAGTTCTTTATAGACTGCAGCC
TTCAATATGTTTTTTAGTGCCATCTCTTTCTTTTTCACTTTCAAT
Right flanking sequence: Indices 67188 -- 67687
GGCGGGGGCGAAACAATTACAGTTCAATAGTTCACTCTTTTTTAATCACATATTCTAAATAGAGT
TCTTTATAGACTGCAGCCTTCAATATGTTTTTAAGTGCCATCTCTTTCTTTTTTTCAATAGGTTC
TGGATCTGCACGAGGGCTCCGATCATATATAAGCTTTTGAGGGGCTCTCCACAGCGGTCTCGTAT
TGCCCCCTCCGGCTTCGCTTTCAGCAGAGACCGGCAACAGGCAATTTGTCCAAGAATGGGGACCG
ACCGGCAATAGAGGGACGATCCAAATGCCATGCGAGCACGAGAGACTCACCATATTCAGAGCCCT
TACACTTTGATTCAATCATCGCACTGATCAGGAGAGTGCCACCTTTTCCTCAATCACTAGGGATT
TGCTAGATCCAACACGAAGTCGGACCACTTGTAGAGCTATATGAGAGAATCTCATTAGATTGTTC
GTAAGAGACCGAAGGTTTTTTACGGATCGGAGCGAACCGATGATA
Found at i:73024 original size:63 final size:65
Alignment explanation
Indices: 72923--73051 Score: 165
Period size: 63 Copynumber: 2.0 Consensus size: 65
72913 ATTTTCTCTT
**
72923 TTATTCCAGATAGAATTAGATCCTCTATCATAAGCTCTAGTTCTACATTCTCTAC-CCTA-ATTC
1 TTATTCCAGATAGAATTAGATCCTCTAGAATAAGCTCTAGTTCTACATTCTCTACTCCTATATTC
* * * * *
72986 TTATTCTAGATAGAATTAGATTCTTTAGAAT-AGCCTCTAGTTCTCCATTTTCTACTCCTATATT
1 TTATTCCAGATAGAATTAGATCCTCTAGAATAAG-CTCTAGTTCTACATTCTCTACTCCTATATT
73050 C
65 C
73051 T
1 T
73052 ATACTTATTC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
62 2 0.04
63 45 0.80
64 4 0.07
65 5 0.09
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (65 bp):
TTATTCCAGATAGAATTAGATCCTCTAGAATAAGCTCTAGTTCTACATTCTCTACTCCTATATTC
Left flanking sequence: Indices 72423 -- 72922
CGAGTCAACCAATTACTCTACCCCGCTTCCATTGTTCTTCTCATTATTCCTGTTATTACTATTCA
ACCTATTGATTATGATCTGAATGGGGCCCTATCCGGTGTTCGAATAGATAAGCCCATAGCTAGAT
AAGAGGGTTTGCCTCGATTGGGATGTCTCTCTATAGTAGAACCTGTGAATTCTGAGAATTGTTAC
GTAAGAGGGGGAACCTATCGCTTGCCCACATTGATAAAGGCATTGCCTATATATAGTTGTAGGCC
CACGGTCATTACATACGATGCCCCACACCAAAGATCTTGTAAAGCTATTAAGAACAAGAGAGAGC
ACTATGCATTCTTATTCAGTTTTAAGAGAGACTTAGAATAGGATCCAAACGAAGCCTGTTGAATC
CCTCGTGCGTGAAAGGTGAGAGCCGGCCACTCTCTTTCTTTCCCCCTTCCACTAAGAACCTCTAG
CGGGTGACTTAACAACCCATGGTGGCGGGCTCTTTATTTTCTCTT
Right flanking sequence: Indices 73052 -- 73551
ATACTTATTCTACATTCTCTTTTATTCTAGATACACAAGATAGACTTAGATCCCCTATATGCTAT
AGTTATACATTCCCTTTTATCAGAGATACACTACATAGAATCATATCCTCTACTTCTCCATTCTC
TTTTATTCTAGAGAGATTTTGCGTTACTCTAACAAATAGTGCCATATATTAGTTTTCTATTCTTC
TTTTTAATAGTGCCATCAGGTTATCGTGGAGTTACCCTCATTCTTGCCAACTTTTAAAAGGCTAC
AAGATGGGCACTATTTACACGCGTAGGAGGGGATATACACGGGTAGGGCGGGATAACGCGAGGGA
CGGGATTCACTCTACGGCTGGGACTACGGCTTCACTGCTTCCTTATCCTTGTTGTTATGGACTAG
TAATCCCTCCAATTCGAACAGCGGTAGGCATTTCGAATTTAAGTTCCCCGTTGCTCATCATGGCC
TTTATCATAAAGGCCAGCGGGTGCCCGCCCCGCCGGGATACATGC
Found at i:77986 original size:27 final size:27
Alignment explanation
Indices: 77956--78009 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
77946 CAGCTTGTGA
*
77956 AACTTGCCTTTTCCCTGCCTTGAATTC
1 AACTTGCCTTATCCCTGCCTTGAATTC
77983 AACTTGCCTTATCCCTGCCTTGAATTC
1 AACTTGCCTTATCCCTGCCTTGAATTC
78010 TTCCGGCCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.17, C:0.33, G:0.11, T:0.39
Consensus pattern (27 bp):
AACTTGCCTTATCCCTGCCTTGAATTC
Left flanking sequence: Indices 77456 -- 77955
TGGGGAAGATTATGGATGGACGTAATACATTCTTGTGTGTTTTGCCCCCTAATAGCGTAATAGTC
ACCTCTCCATTTGAAGTTGTCACAGATGTTGCCACTAGAATCTCCATCTTGCTTGGCCTGATCTA
TTATGCGTTGGCGGACTGAACTCAGAATCTCAAGGTCTGCTATTAACTGATTGAGATCCTTAGGT
GTTACTCCCGGTGCTGTCAGGACTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACTGGAGGTGC
TGCCGGCATAGTAGGGCCGCCCTCGCAATGCCCCTTCTTTCTTGGGTCTTGTGAAGAGTCTTTAA
ATAGTGGCACAGCTTGTGAAACTTGCCTTTTCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGAT
GTAAATGAATCTTCTTGCAGCGGTTTACAAGTGGGCTTGAGAGGGGAATCATAATGCCCCTTCTT
TCTTGGGTCTTGTGAAGAGTCTTTAAATAGTGGCACAGCTTGTGA
Right flanking sequence: Indices 78010 -- 78509
TTCCGGCCTGGCAGGAGATGTAAAACTAACTTATTCTTGCAGCGGTTTACAAGTGGGCTTGAGAG
GGGAATCATAATGCCCCCTATTTCTTGGGTCTTGTGAAGAGTCTTTAAATAGTGGCACAGCTTGT
GAAACTTGCCTTTTCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGATGTAAAACTAACTTATTC
TTGCAGCGGTTTACAAGTGGGCTTGAGAGGGGAATCATTTAGCTGACAAGAACCAACTTGGAGGC
CTGAAGGCTTATTAGCCATAGCCGACATAGCTTAATAGTGCCATCTTGCCGGATCGATCCGGCAA
AATAGTGGATGACTGTGAAAAATTTAGGGGTTGGGAATTACCAAGAGCCTACAAGGTTGGTCTTA
CTTACATAAGAGAAAATACGCAATTCTGGGTGATCAAAGATAAGATAATGACCGCCAAAAGTAGA
ATCGTCTGGAAGAGGGATCTTTTCCATAAGGGAAAGGGCTGTATG
Found at i:78018 original size:27 final size:27
Alignment explanation
Indices: 77961--78018 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
77951 TGTGAAACTT
* **
77961 GCCTTTTCCCTGCCTTGAATTCAACTT
1 GCCTTATCCCTGCCTTGAATTCAACCG
**
77988 GCCTTATCCCTGCCTTGAATTCTTCCG
1 GCCTTATCCCTGCCTTGAATTCAACCG
78015 GCCT
1 GCCT
78019 GGCAGGAGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.12, C:0.36, G:0.14, T:0.38
Consensus pattern (27 bp):
GCCTTATCCCTGCCTTGAATTCAACCG
Left flanking sequence: Indices 77461 -- 77960
AAGATTATGGATGGACGTAATACATTCTTGTGTGTTTTGCCCCCTAATAGCGTAATAGTCACCTC
TCCATTTGAAGTTGTCACAGATGTTGCCACTAGAATCTCCATCTTGCTTGGCCTGATCTATTATG
CGTTGGCGGACTGAACTCAGAATCTCAAGGTCTGCTATTAACTGATTGAGATCCTTAGGTGTTAC
TCCCGGTGCTGTCAGGACTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACTGGAGGTGCTGCCG
GCATAGTAGGGCCGCCCTCGCAATGCCCCTTCTTTCTTGGGTCTTGTGAAGAGTCTTTAAATAGT
GGCACAGCTTGTGAAACTTGCCTTTTCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGATGTAAA
TGAATCTTCTTGCAGCGGTTTACAAGTGGGCTTGAGAGGGGAATCATAATGCCCCTTCTTTCTTG
GGTCTTGTGAAGAGTCTTTAAATAGTGGCACAGCTTGTGAAACTT
Right flanking sequence: Indices 78019 -- 78518
GGCAGGAGATGTAAAACTAACTTATTCTTGCAGCGGTTTACAAGTGGGCTTGAGAGGGGAATCAT
AATGCCCCCTATTTCTTGGGTCTTGTGAAGAGTCTTTAAATAGTGGCACAGCTTGTGAAACTTGC
CTTTTCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGATGTAAAACTAACTTATTCTTGCAGCGG
TTTACAAGTGGGCTTGAGAGGGGAATCATTTAGCTGACAAGAACCAACTTGGAGGCCTGAAGGCT
TATTAGCCATAGCCGACATAGCTTAATAGTGCCATCTTGCCGGATCGATCCGGCAAAATAGTGGA
TGACTGTGAAAAATTTAGGGGTTGGGAATTACCAAGAGCCTACAAGGTTGGTCTTACTTACATAA
GAGAAAATACGCAATTCTGGGTGATCAAAGATAAGATAATGACCGCCAAAAGTAGAATCGTCTGG
AAGAGGGATCTTTTCCATAAGGGAAAGGGCTGTATGGATCAAAGT
Found at i:78084 original size:186 final size:183
Alignment explanation
Indices: 77800--78168 Score: 659
Period size: 186 Copynumber: 2.0 Consensus size: 183
77790 CAGCTTGTGA
* *
77800 AACTTGCCTTTTCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGATGTAAATGAATCTTCTTGCA
1 AACTTGCCTTATCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGATGTAAATGAATATTCTTGCA
* *
77865 GCGGTTTACAAGTGGGCTTGAGAGGGGAATCATAATGCCCCTTCTTTCTTGGGTCTTGTGAAGAG
66 GCGGTTTACAAGTGGGCTTGAGAGGGGAATCATAATGCCCCCTATTTCTTGGGTCTTGTGAAGAG
77930 TCTTTAAATAGTGGCACAGCTTGTGAAACTTGCCTTTTCCCTGCCTTGAATTC
131 TCTTTAAATAGTGGCACAGCTTGTGAAACTTGCCTTTTCCCTGCCTTGAATTC
77983 AACTTGCCTTATCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGATGTAAAACT-AACTTATTCT
1 AACTTGCCTTATCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGATGT-AAA-TGAA--TATTCT
78047 TGCAGCGGTTTACAAGTGGGCTTGAGAGGGGAATCATAATGCCCCCTATTTCTTGGGTCTTGTGA
62 TGCAGCGGTTTACAAGTGGGCTTGAGAGGGGAATCATAATGCCCCCTATTTCTTGGGTCTTGTGA
78112 AGAGTCTTTAAATAGTGGCACAGCTTGTGAAACTTGCCTTTTCCCTGCCTTGAATTC
127 AGAGTCTTTAAATAGTGGCACAGCTTGTGAAACTTGCCTTTTCCCTGCCTTGAATTC
78169 TTCCGGCCTG
Statistics
Matches: 178, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
183 47 0.26
184 5 0.03
185 1 0.01
186 125 0.70
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (183 bp):
AACTTGCCTTATCCCTGCCTTGAATTCTTCCGGCCTGGCAGGAGATGTAAATGAATATTCTTGCA
GCGGTTTACAAGTGGGCTTGAGAGGGGAATCATAATGCCCCCTATTTCTTGGGTCTTGTGAAGAG
TCTTTAAATAGTGGCACAGCTTGTGAAACTTGCCTTTTCCCTGCCTTGAATTC
Left flanking sequence: Indices 77300 -- 77799
AAACGCCCATTTTCCTCATGACGGGAGGGGAGAGTTTGCCCTACTCTCATATCGTGGAAAATCTC
TTCTTTAAACAAGGTTTTATAGAGCAAAAAATCCCTTCGTAGGGTTCTCTGGGGGGCGGGCAGTC
TTTGAGGGCAGATAGCTTTTAATATCTGGGGAAGATTATGGATGGACGTAATACATTCTTGTGTG
TTTTGCCCCCTAATAGCGTAATAGTCACCTCTCCATTTGAAGTTGTCACAGATGTTGCCACTAGA
ATCTCCATCTTGCTTGGCCTGATCTATTATGCGTTGGCGGACTGAACTCAGAATCTCAAGGTCTG
CTATTAACTGATTGAGATCCTTAGGTGTTACTCCCGGTGCTGTCAGGACTATCCCTTTCCTGAGC
GTAGCGAAGGGAAGGACTGGAGGTGCTGCCGGCATAGTAGGGCCGCCCTCGCAATGCCCCTTCTT
TCTTGGGTCTTGTGAAGAGTCTTTAAATAGTGGCACAGCTTGTGA
Right flanking sequence: Indices 78169 -- 78668
TTCCGGCCTGGCAGGAGATGTAAAACTAACTTATTCTTGCAGCGGTTTACAAGTGGGCTTGAGAG
GGGAATCATTTAGCTGACAAGAACCAACTTGGAGGCCTGAAGGCTTATTAGCCATAGCCGACATA
GCTTAATAGTGCCATCTTGCCGGATCGATCCGGCAAAATAGTGGATGACTGTGAAAAATTTAGGG
GTTGGGAATTACCAAGAGCCTACAAGGTTGGTCTTACTTACATAAGAGAAAATACGCAATTCTGG
GTGATCAAAGATAAGATAATGACCGCCAAAAGTAGAATCGTCTGGAAGAGGGATCTTTTCCATAA
GGGAAAGGGCTGTATGGATCAAAGTAAAATCCTCCATTGCATCTTTAAAGGGCAGGCCTCTATAT
AACATAAAGGTCTTGGAAACTCTTCGTGGAACTGCGTTAAAAATATCTCGTAGATCTAGAAGAAG
TTCCTCCACAGAGTTATAGGATCTAAAGGGGTTTTTCTATTGATT
Found at i:91619 original size:32 final size:32
Alignment explanation
Indices: 91583--91706 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
91573 GTAGGGTAAA
91583 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
91615 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
91647 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
91679 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
91707 GCCTGATCCG
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 91083 -- 91582
CCATCTTGGTTAAGGTCCTCGACCTTGAGGAGACTTCTTTCTTTCTTGATTCCATTTAAGGTTAT
ACCTTTCCTGAGCGTAGCGAAGGGAAGGGAGGCGAAGCGCTATTGAGGAAATGAATAGGGGGCAC
CCACCGAAGCTACGATCGGTAGCTTTTTTAACCATAGTAAACTCTATCCTCAAAAAACCCTATTC
CTCTTCCTATTGATTGAAACCCGATCGACTGTAGAAGGCCGGCCACTACTTGAATCCTTCTTTCC
GCTGATTCTAACATAGTTATAGGCCAATAAAGGAATTAGATCCTAGATTCTAACATAGTTATAGG
CCTGATCTAATCAATGCTTGGACACTACCTTAATCAATGTGAATAGCCATAGCGATTAGATCCTT
GATCCTAATCAATGTGAATAAAAGGCACAGTGACAGTGATCAGGCCCTGATCCTGATTACTACAA
CAGAGATCTAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 91707 -- 92206
GCCTGATCCGATCTCTTCTCTATCGACCACATGACTGTTAATACAGGGATGTGATTAGTGCTAGA
TCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATTTAGCCATAGTGATCAGGCCCT
GGATTCTAATCGATGCTTGATCTTTCTAACCGGCTTGGATCTAAATGCCATAGCAACTATGAATT
AGCGATTAGATCCTTGATCCTAATCAATGTGAATATTGAATAGCGATCCGGTGATGATTCTAATT
CATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCG
ATTTAGCCATAGTGATCAGGCCCTGGATTCTAATCGATGCTTGATCTTTCTAACCGGCTTGGATC
TAAATGCCATAGCAACTATGAATTAGCGATTAGATCCTTGATCCTAATCAATGTGAATATTGAAT
AGCCATCAGGTGATGATTCTAATTCATAGGGATGTGATTAGTGCT
Found at i:92130 original size:219 final size:219
Alignment explanation
Indices: 91751--92371 Score: 1117
Period size: 219 Copynumber: 2.8 Consensus size: 219
91741 CTGTTAATAC
91751 AGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATT
1 AGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATT
91816 TAGCCATAGTGATCAGGCCCTGGATTCTAATCGATGCTTGATCTTTCTAACCGGCTTGGATCTAA
66 TAGCCATAGTGATCAGGCCCTGGATTCTAATCGATGCTTGATCTTTCTAACCGGCTTGGATCTAA
91881 ATGCCATAGCAACTATGAATTAGCGATTAGATCCTTGATCCTAATCAATGTGAATATTGAATAGC
131 ATGCCATAGCAACTATGAATTAGCGATTAGATCCTTGATCCTAATCAATGTGAATATTGAATAGC
* *
91946 GATCCGGTGATGATTCTAATTCAT
196 CATCAGGTGATGATTCTAATTCAT
91970 AGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATT
1 AGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATT
92035 TAGCCATAGTGATCAGGCCCTGGATTCTAATCGATGCTTGATCTTTCTAACCGGCTTGGATCTAA
66 TAGCCATAGTGATCAGGCCCTGGATTCTAATCGATGCTTGATCTTTCTAACCGGCTTGGATCTAA
92100 ATGCCATAGCAACTATGAATTAGCGATTAGATCCTTGATCCTAATCAATGTGAATATTGAATAGC
131 ATGCCATAGCAACTATGAATTAGCGATTAGATCCTTGATCCTAATCAATGTGAATATTGAATAGC
92165 CATCAGGTGATGATTCTAATTCAT
196 CATCAGGTGATGATTCTAATTCAT
92189 AGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATT
1 AGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATT
* * *
92254 TAGCCATAGTGATCAGGCCCTGGATTCTAATAGATGCTTGATCTTTCTAACCGGTTTGGATCTTA
66 TAGCCATAGTGATCAGGCCCTGGATTCTAATCGATGCTTGATCTTTCTAACCGGCTTGGATCTAA
* * *
92319 AT-CAAT-GTGAA-TA-GCCA-TAGCGATTAGATCCTTGATCCTAATCAATGTGAATA
131 ATGCCATAG-CAACTATG-AATTAGCGATTAGATCCTTGATCCTAATCAATGTGAATA
92372 GCCATAGTGA
Statistics
Matches: 392, Mismatches: 8, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
216 37 0.09
217 4 0.01
218 5 0.01
219 346 0.88
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (219 bp):
AGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATT
TAGCCATAGTGATCAGGCCCTGGATTCTAATCGATGCTTGATCTTTCTAACCGGCTTGGATCTAA
ATGCCATAGCAACTATGAATTAGCGATTAGATCCTTGATCCTAATCAATGTGAATATTGAATAGC
CATCAGGTGATGATTCTAATTCAT
Left flanking sequence: Indices 91251 -- 91750
AAACTCTATCCTCAAAAAACCCTATTCCTCTTCCTATTGATTGAAACCCGATCGACTGTAGAAGG
CCGGCCACTACTTGAATCCTTCTTTCCGCTGATTCTAACATAGTTATAGGCCAATAAAGGAATTA
GATCCTAGATTCTAACATAGTTATAGGCCTGATCTAATCAATGCTTGGACACTACCTTAATCAAT
GTGAATAGCCATAGCGATTAGATCCTTGATCCTAATCAATGTGAATAAAAGGCACAGTGACAGTG
ATCAGGCCCTGATCCTGATTACTACAACAGAGATCTAGCAGTGGCCATGCCCCGTCTATAGTGTA
GGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
GGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAG
GGCCTGATCCGATCTCTTCTCTATCGACCACATGACTGTTAATAC
Right flanking sequence: Indices 92372 -- 92871
GCCATAGTGATCAGGCCCTGATTCTAATGCATAGGGAACATCCTAATTCATAGGGATCCGAACTA
GATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTTGATTTGTCTTAGATGGATCCGAG
CTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGATCCGAACTATTTTGGACCTAATAAAGG
CTCCTCCTGATTGCTCCGTCTATAGAGGAAACAAGATCTATAGACGGAGCAGTGGCCATGCCCCG
TCTATAGTGTAGGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGT
AGCGAAGGGAAGGGCCTGATCCAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCC
TTTCCTGAGCGTAGCGAAGGGAAGGGGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGA
AGGCATGTGGTGATCCCCCTGTTCCATAGGTCACACAGTATAGGA
Found at i:92686 original size:32 final size:32
Alignment explanation
Indices: 92650--92786 Score: 148
Period size: 32 Copynumber: 3.9 Consensus size: 32
92640 GTAGGGTAAA
92650 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
92682 CCCTTTCCTGAGCGTAGCGAAGGGAAGGGCCTGATCCAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAA------G-------GTTAT
*
92727 CCCTTTCCTGAGTGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
92759 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
92787 GGATCCCACA
Statistics
Matches: 90, Mismatches: 2, Indels: 26
0.76 0.02 0.22
Matches are distributed among these distances:
32 58 0.64
38 1 0.01
39 1 0.01
45 30 0.33
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 92150 -- 92649
TGAATATTGAATAGCCATCAGGTGATGATTCTAATTCATAGGGATGTGATTAGTGCTAGATCTCT
GTTGTAGGCCCTATGGTATAGATTGCTTCTATCTCGATTTAGCCATAGTGATCAGGCCCTGGATT
CTAATAGATGCTTGATCTTTCTAACCGGTTTGGATCTTAATCAATGTGAATAGCCATAGCGATTA
GATCCTTGATCCTAATCAATGTGAATAGCCATAGTGATCAGGCCCTGATTCTAATGCATAGGGAA
CATCCTAATTCATAGGGATCCGAACTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTA
TCTTGATTTGTCTTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGA
TCCGAACTATTTTGGACCTAATAAAGGCTCCTCCTGATTGCTCCGTCTATAGAGGAAACAAGATC
TATAGACGGAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 92787 -- 93286
GGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGCATGTGGTGATCCCCCTGTTCC
ATAGGTCACACAGTATAGGACAACCCTTAGCCAATGGATCCGGCACTTGCACTCGGAGGGAGGCC
GGGCCACTGAACCAATAGTGGCCGGCTACTATTCTATTGGTACTATTGGGGATCTGATAGTGAAT
AGTATAGAGCCCCGGCCCGCCTGTGGTGTAGACATCCACCCGATCTTCTTTGAATAGAAAGGTGT
GAAGGCACGGTGGATAGTGGCTGGCCCCAGTGCCATGAGAGATAGGCACTATCAGGAGCCAGGCC
ACTATTCTAAGATAGGGTGGATGTATGCACTATAGACTGATCGGATCCATACTATGCCTATCTGA
TGGCACTATCTTAGCTAATCTAAAATAGGATTTATTATGATATTAGTAGCCATATCTTATCAGCT
TATTAGATTAGCAGGTAGATCCAAGGGTGGATATATACTATAAAA
Found at i:92793 original size:32 final size:32
Alignment explanation
Indices: 92725--92793 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
92715 ATCCAAGGTT
* **
92725 ATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTT
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGG
92757 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGG
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGG
92789 ATCCC
1 ATCCC
92794 ACACTATTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGG
Left flanking sequence: Indices 92225 -- 92724
CTATGGTATAGATTGCTTCTATCTCGATTTAGCCATAGTGATCAGGCCCTGGATTCTAATAGATG
CTTGATCTTTCTAACCGGTTTGGATCTTAATCAATGTGAATAGCCATAGCGATTAGATCCTTGAT
CCTAATCAATGTGAATAGCCATAGTGATCAGGCCCTGATTCTAATGCATAGGGAACATCCTAATT
CATAGGGATCCGAACTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTTGATTTG
TCTTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGATCCGAACTAT
TTTGGACCTAATAAAGGCTCCTCCTGATTGCTCCGTCTATAGAGGAAACAAGATCTATAGACGGA
GCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGCCTGATCCAAGGTT
Right flanking sequence: Indices 92794 -- 93293
ACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGCATGTGGTGATCCCCCTGTTCCATAGGTC
ACACAGTATAGGACAACCCTTAGCCAATGGATCCGGCACTTGCACTCGGAGGGAGGCCGGGCCAC
TGAACCAATAGTGGCCGGCTACTATTCTATTGGTACTATTGGGGATCTGATAGTGAATAGTATAG
AGCCCCGGCCCGCCTGTGGTGTAGACATCCACCCGATCTTCTTTGAATAGAAAGGTGTGAAGGCA
CGGTGGATAGTGGCTGGCCCCAGTGCCATGAGAGATAGGCACTATCAGGAGCCAGGCCACTATTC
TAAGATAGGGTGGATGTATGCACTATAGACTGATCGGATCCATACTATGCCTATCTGATGGCACT
ATCTTAGCTAATCTAAAATAGGATTTATTATGATATTAGTAGCCATATCTTATCAGCTTATTAGA
TTAGCAGGTAGATCCAAGGGTGGATATATACTATAAAAAGAAAGA
Found at i:93441 original size:29 final size:29
Alignment explanation
Indices: 93403--93498 Score: 104
Period size: 29 Copynumber: 3.3 Consensus size: 29
93393 CATACTATGC
*
93403 CTATCTGATGGCACTATCTTAGCTGCCGT
1 CTATCAGATGGCACTATCTTAGCTGCCGT
*** ****
93432 CTATCAGATGGCACTAT-AGGGCTATTAT
1 CTATCAGATGGCACTATCTTAGCTGCCGT
*
93460 CTATCAGATGGCACTATCTTAGTTGCCGT
1 CTATCAGATGGCACTATCTTAGCTGCCGT
93489 CTATCAGATG
1 CTATCAGATG
93499 ACAAGGGCTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
28 21 0.42
29 29 0.58
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (29 bp):
CTATCAGATGGCACTATCTTAGCTGCCGT
Left flanking sequence: Indices 92903 -- 93402
CTCGGAGGGAGGCCGGGCCACTGAACCAATAGTGGCCGGCTACTATTCTATTGGTACTATTGGGG
ATCTGATAGTGAATAGTATAGAGCCCCGGCCCGCCTGTGGTGTAGACATCCACCCGATCTTCTTT
GAATAGAAAGGTGTGAAGGCACGGTGGATAGTGGCTGGCCCCAGTGCCATGAGAGATAGGCACTA
TCAGGAGCCAGGCCACTATTCTAAGATAGGGTGGATGTATGCACTATAGACTGATCGGATCCATA
CTATGCCTATCTGATGGCACTATCTTAGCTAATCTAAAATAGGATTTATTATGATATTAGTAGCC
ATATCTTATCAGCTTATTAGATTAGCAGGTAGATCCAAGGGTGGATATATACTATAAAAAGAAAG
AAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGA
TGGGTTTCTATATACTATAGATCCTAGATCGGATCCATACTATGC
Right flanking sequence: Indices 93499 -- 93998
ACAAGGGCTATTATCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTAATGCTATTCGA
TTAGTAGCTATATCCTATTGTGATTTAGAGCCTTAGATATAAGGCTAATGCTATTCTATTAGTAG
CTATATCCTATTGTGATTTAGAATCTTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATC
CTATTGTGATTTAGAGCCTTAGATATAAGGCTATTGCTATCTATGCCATAATCATATCCTATTGT
GATTTAGAGTCTTAGATCCAAGGGTGGGTATATAACTGCGATAGGCACGGGCCATATCCTATCTA
ATTTGGATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTAT
TCTATTAGTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCAATCAG
TAGCCATACCCTGTCAGCTTATGCTATTAGCTATTGTCTATCAGA
Found at i:93512 original size:53 final size:57
Alignment explanation
Indices: 93403--93533 Score: 216
Period size: 57 Copynumber: 2.4 Consensus size: 57
93393 CATACTATGC
*
93403 CTATCTGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTAT
1 CTATCAGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTAT
*
93460 CTATCAGATGGCACTATCTTAGTTGCCGTCTATCAGAT-G-AC-A-AGGGCTATTAT
1 CTATCAGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTAT
93513 CTATCAGATGGCACTATCTTA
1 CTATCAGATGGCACTATCTTA
93534 ATAGGTAGAT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
53 32 0.44
54 1 0.01
55 2 0.03
56 1 0.01
57 36 0.50
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (57 bp):
CTATCAGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTAT
Left flanking sequence: Indices 92903 -- 93402
CTCGGAGGGAGGCCGGGCCACTGAACCAATAGTGGCCGGCTACTATTCTATTGGTACTATTGGGG
ATCTGATAGTGAATAGTATAGAGCCCCGGCCCGCCTGTGGTGTAGACATCCACCCGATCTTCTTT
GAATAGAAAGGTGTGAAGGCACGGTGGATAGTGGCTGGCCCCAGTGCCATGAGAGATAGGCACTA
TCAGGAGCCAGGCCACTATTCTAAGATAGGGTGGATGTATGCACTATAGACTGATCGGATCCATA
CTATGCCTATCTGATGGCACTATCTTAGCTAATCTAAAATAGGATTTATTATGATATTAGTAGCC
ATATCTTATCAGCTTATTAGATTAGCAGGTAGATCCAAGGGTGGATATATACTATAAAAAGAAAG
AAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGA
TGGGTTTCTATATACTATAGATCCTAGATCGGATCCATACTATGC
Right flanking sequence: Indices 93534 -- 94033
ATAGGTAGATATAAGGCTAATGCTATTCGATTAGTAGCTATATCCTATTGTGATTTAGAGCCTTA
GATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAATCTTAGATATAA
GGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCTTAGATATAAGGCTATT
GCTATCTATGCCATAATCATATCCTATTGTGATTTAGAGTCTTAGATCCAAGGGTGGGTATATAA
CTGCGATAGGCACGGGCCATATCCTATCTAATTTGGATTAGCTATTGTCTATCAGATGGCACTAT
CTTAATAGGTAGATATAAGGCTATTGCTATTCTATTAGTAGCTATCGCTATGGCTATTAAGAGTC
TTAGATCCAAGGCTATTGCTATCCAATCAGTAGCCATACCCTGTCAGCTTATGCTATTAGCTATT
GTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTG
Found at i:93629 original size:58 final size:58
Alignment explanation
Indices: 93539--93775 Score: 363
Period size: 58 Copynumber: 4.1 Consensus size: 58
93529 TCTTAATAGG
*
93539 TAGATATAAGGCTAATGCTATTCGATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
**
93597 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAATCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
93655 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
* * * *
93713 TAGATATAAGGCTATTGCTA-TCTATGCCA-TA-ATCATATCCTATTGTGATTTAGAGTCT
1 TAGATATAAGGCTAATGCTATTCTAT--TAGTAGCT-ATATCCTATTGTGATTTAGAGCCT
93771 TAGAT
1 TAGAT
93776 CCAAGGGTGG
Statistics
Matches: 167, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
57 6 0.04
58 160 0.96
59 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.40
Consensus pattern (58 bp):
TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCT
Left flanking sequence: Indices 93039 -- 93538
AAAGGTGTGAAGGCACGGTGGATAGTGGCTGGCCCCAGTGCCATGAGAGATAGGCACTATCAGGA
GCCAGGCCACTATTCTAAGATAGGGTGGATGTATGCACTATAGACTGATCGGATCCATACTATGC
CTATCTGATGGCACTATCTTAGCTAATCTAAAATAGGATTTATTATGATATTAGTAGCCATATCT
TATCAGCTTATTAGATTAGCAGGTAGATCCAAGGGTGGATATATACTATAAAAAGAAAGAAGATA
GGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATGGGTT
TCTATATACTATAGATCCTAGATCGGATCCATACTATGCCTATCTGATGGCACTATCTTAGCTGC
CGTCTATCAGATGGCACTATAGGGCTATTATCTATCAGATGGCACTATCTTAGTTGCCGTCTATC
AGATGACAAGGGCTATTATCTATCAGATGGCACTATCTTAATAGG
Right flanking sequence: Indices 93776 -- 94275
CCAAGGGTGGGTATATAACTGCGATAGGCACGGGCCATATCCTATCTAATTTGGATTAGCTATTG
TCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATTAGTAGCTATCG
CTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCAATCAGTAGCCATACCCTGTCAG
CTTATGCTATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCT
ATTCTATTAGTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCGATC
AGTAGCCATACACTATCTGATGGCACTATCTTAGCTACTATCAAATAGGGCTATTGCTATCCGAT
CAGTAGCCATACACTATCAAGCTTTTAGATTAGCTATTGTCTATCAGATGGCACTATCTTAATTG
CCGTCTATCAGATGACAAGGGCTATTATCTATCAGATGGCACTAT
Found at i:93994 original size:149 final size:149
Alignment explanation
Indices: 93830--94111 Score: 555
Period size: 149 Copynumber: 1.9 Consensus size: 149
93820 TCTAATTTGG
93830 ATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATT
1 ATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATT
93895 AGTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCAATCAGTAGCCA
66 AGTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCAATCAGTAGCCA
93960 TACCCTGTCAGCTTATGCT
131 TACCCTGTCAGCTTATGCT
93979 ATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATT
1 ATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATT
*
94044 AGTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCGATCAGTAGCCA
66 AGTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCAATCAGTAGCCA
94109 TAC
131 TAC
94112 ACTATCTGAT
Statistics
Matches: 132, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 132 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (149 bp):
ATTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATT
AGTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCAATCAGTAGCCA
TACCCTGTCAGCTTATGCT
Left flanking sequence: Indices 93330 -- 93829
ATGGCCGGGCCAGGCCACTATTCTAAGATGGGTTTCTATATACTATAGATCCTAGATCGGATCCA
TACTATGCCTATCTGATGGCACTATCTTAGCTGCCGTCTATCAGATGGCACTATAGGGCTATTAT
CTATCAGATGGCACTATCTTAGTTGCCGTCTATCAGATGACAAGGGCTATTATCTATCAGATGGC
ACTATCTTAATAGGTAGATATAAGGCTAATGCTATTCGATTAGTAGCTATATCCTATTGTGATTT
AGAGCCTTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAATCT
TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGCCTTAGATAT
AAGGCTATTGCTATCTATGCCATAATCATATCCTATTGTGATTTAGAGTCTTAGATCCAAGGGTG
GGTATATAACTGCGATAGGCACGGGCCATATCCTATCTAATTTGG
Right flanking sequence: Indices 94112 -- 94611
ACTATCTGATGGCACTATCTTAGCTACTATCAAATAGGGCTATTGCTATCCGATCAGTAGCCATA
CACTATCAAGCTTTTAGATTAGCTATTGTCTATCAGATGGCACTATCTTAATTGCCGTCTATCAG
ATGACAAGGGCTATTATCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTAATGCTATT
CTATTAGTAGCTATATCCTATTGTGATTTAGAGTCTTAGATATAAGGCTAATGCTATTCTATTAG
TAGCTATATCCTATTGTGATTTAGAATCTTAGATATAAGGCTATTGCTATTCTATTAGTAGCTAT
CGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATTCTATTAGTGGCCATATCCTATC
GCATTTATATTAGATCCAAGATCGGATCCCTGACTAAGATAGTGTCATCTCGATAAATGCAACAG
TGAGATCACTATTGGATCAGGCCCTTCCCTTCGCTACGCTCAGGA
Found at i:94354 original size:58 final size:58
Alignment explanation
Indices: 94285--94500 Score: 312
Period size: 58 Copynumber: 3.7 Consensus size: 58
94275 TCTTAATAGG
94285 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGTCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGTCT
*
94343 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAATCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGTCT
* * *
94401 TAGATATAAGGCTATTGCTATTCTATTAGTAGC--TATCGCTATGGCT-ATTAAGAGTCT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATC-CTATTG-TGATTTAGAGTCT
** * * *
94458 TAGATCCAAGGCTATTGCTATTCTATTAGTGGCCATATCCTAT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTAT
94501 CGCATTTATA
Statistics
Matches: 146, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
56 4 0.03
57 44 0.30
58 94 0.64
59 4 0.03
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (58 bp):
TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGTCT
Left flanking sequence: Indices 93785 -- 94284
GGTATATAACTGCGATAGGCACGGGCCATATCCTATCTAATTTGGATTAGCTATTGTCTATCAGA
TGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATTAGTAGCTATCGCTATGGCTA
TTAAGAGTCTTAGATCCAAGGCTATTGCTATCCAATCAGTAGCCATACCCTGTCAGCTTATGCTA
TTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATTA
GTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCGATCAGTAGCCAT
ACACTATCTGATGGCACTATCTTAGCTACTATCAAATAGGGCTATTGCTATCCGATCAGTAGCCA
TACACTATCAAGCTTTTAGATTAGCTATTGTCTATCAGATGGCACTATCTTAATTGCCGTCTATC
AGATGACAAGGGCTATTATCTATCAGATGGCACTATCTTAATAGG
Right flanking sequence: Indices 94501 -- 95000
CGCATTTATATTAGATCCAAGATCGGATCCCTGACTAAGATAGTGTCATCTCGATAAATGCAACA
GTGAGATCACTATTGGATCAGGCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTC
GCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCCTACACTAT
AGACGGGGCATGGCCACTGCTCCGTCTATAGGGAGCATTGATTAGATCCACGATCGGATCCCTGA
CTAAGATAGTGTCATCTCGATAAATGCAACAGTGAGATCACTATTGGATCAGGCCCTTCCCTTCG
CTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGC
TACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCCTACACTATAG
ACGGAGCATGGCTATGAGTATTCTATCTTGTTTACCCTATAGACG
Found at i:94496 original size:115 final size:115
Alignment explanation
Indices: 94285--94500 Score: 319
Period size: 115 Copynumber: 1.9 Consensus size: 115
94275 TCTTAATAGG
* * *
94285 TAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGTCTTAGATAT
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGC-ATATCCTATGGTGATTAAGAGTCTTAGATAC
*
94350 AAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAATCT
65 AAGGCTAATGCTATTCTATTAGTAGCCATATCCTATTGTGATTTAGAATCT
* *
94401 TAGATATAAGGCTATTGCTATTCTATTAGTAGC-TATCGCTATGGCT-ATTAAGAGTCTTAGATC
1 TAGATATAAGGCTAATGCTATTCTATTAGTAGCATATC-CTATGG-TGATTAAGAGTCTTAGATA
* *
94464 CAAGGCTATTGCTATTCTATTAGTGGCCATATCCTAT
64 CAAGGCTAATGCTATTCTATTAGTAGCCATATCCTAT
94501 CGCATTTATA
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
114 4 0.04
115 53 0.59
116 33 0.37
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (115 bp):
TAGATATAAGGCTAATGCTATTCTATTAGTAGCATATCCTATGGTGATTAAGAGTCTTAGATACA
AGGCTAATGCTATTCTATTAGTAGCCATATCCTATTGTGATTTAGAATCT
Left flanking sequence: Indices 93785 -- 94284
GGTATATAACTGCGATAGGCACGGGCCATATCCTATCTAATTTGGATTAGCTATTGTCTATCAGA
TGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATTAGTAGCTATCGCTATGGCTA
TTAAGAGTCTTAGATCCAAGGCTATTGCTATCCAATCAGTAGCCATACCCTGTCAGCTTATGCTA
TTAGCTATTGTCTATCAGATGGCACTATCTTAATAGGTAGATATAAGGCTATTGCTATTCTATTA
GTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTATCCGATCAGTAGCCAT
ACACTATCTGATGGCACTATCTTAGCTACTATCAAATAGGGCTATTGCTATCCGATCAGTAGCCA
TACACTATCAAGCTTTTAGATTAGCTATTGTCTATCAGATGGCACTATCTTAATTGCCGTCTATC
AGATGACAAGGGCTATTATCTATCAGATGGCACTATCTTAATAGG
Right flanking sequence: Indices 94501 -- 95000
CGCATTTATATTAGATCCAAGATCGGATCCCTGACTAAGATAGTGTCATCTCGATAAATGCAACA
GTGAGATCACTATTGGATCAGGCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTC
GCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCCTACACTAT
AGACGGGGCATGGCCACTGCTCCGTCTATAGGGAGCATTGATTAGATCCACGATCGGATCCCTGA
CTAAGATAGTGTCATCTCGATAAATGCAACAGTGAGATCACTATTGGATCAGGCCCTTCCCTTCG
CTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGC
TACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCCTACACTATAG
ACGGAGCATGGCTATGAGTATTCTATCTTGTTTACCCTATAGACG
Found at i:94630 original size:32 final size:32
Alignment explanation
Indices: 94589--94680 Score: 184
Period size: 32 Copynumber: 2.9 Consensus size: 32
94579 TGGATCAGGC
94589 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
94621 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
94653 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
94681 TTTACCCTAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 94089 -- 94588
TGCTATCCGATCAGTAGCCATACACTATCTGATGGCACTATCTTAGCTACTATCAAATAGGGCTA
TTGCTATCCGATCAGTAGCCATACACTATCAAGCTTTTAGATTAGCTATTGTCTATCAGATGGCA
CTATCTTAATTGCCGTCTATCAGATGACAAGGGCTATTATCTATCAGATGGCACTATCTTAATAG
GTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAGTCTTAGATA
TAAGGCTAATGCTATTCTATTAGTAGCTATATCCTATTGTGATTTAGAATCTTAGATATAAGGCT
ATTGCTATTCTATTAGTAGCTATCGCTATGGCTATTAAGAGTCTTAGATCCAAGGCTATTGCTAT
TCTATTAGTGGCCATATCCTATCGCATTTATATTAGATCCAAGATCGGATCCCTGACTAAGATAG
TGTCATCTCGATAAATGCAACAGTGAGATCACTATTGGATCAGGC
Right flanking sequence: Indices 94681 -- 95180
TTTACCCTACACTATAGACGGGGCATGGCCACTGCTCCGTCTATAGGGAGCATTGATTAGATCCA
CGATCGGATCCCTGACTAAGATAGTGTCATCTCGATAAATGCAACAGTGAGATCACTATTGGATC
AGGCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGA
TAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTT
TACCCTACACTATAGACGGAGCATGGCTATGAGTATTCTATCTTGTTTACCCTATAGACGGAGCA
ATCAGGAGGAGCCTTTATTAGATTCAAGAGAATAGAAGAGTTCGGATCCATACTATTAGCCGGTT
ATTATTAGATTAAGGTAATATCTATATCAGAGAAGAGTTCGGATCCATCTAAGACAAGGGTCATA
GAAGCAATAGAATACCATAGAGCCTACAACAGAGATCTAGTTCGG
Found at i:94856 original size:32 final size:32
Alignment explanation
Indices: 94815--94938 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
94805 TGGATCAGGC
94815 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
94847 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
94879 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
94911 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
94939 TTTACCCTAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 94315 -- 94814
AGCTATATCCTATTGTGATTTAGAGTCTTAGATATAAGGCTAATGCTATTCTATTAGTAGCTATA
TCCTATTGTGATTTAGAATCTTAGATATAAGGCTATTGCTATTCTATTAGTAGCTATCGCTATGG
CTATTAAGAGTCTTAGATCCAAGGCTATTGCTATTCTATTAGTGGCCATATCCTATCGCATTTAT
ATTAGATCCAAGATCGGATCCCTGACTAAGATAGTGTCATCTCGATAAATGCAACAGTGAGATCA
CTATTGGATCAGGCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTC
AGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCCTACACTATAGACGGGGC
ATGGCCACTGCTCCGTCTATAGGGAGCATTGATTAGATCCACGATCGGATCCCTGACTAAGATAG
TGTCATCTCGATAAATGCAACAGTGAGATCACTATTGGATCAGGC
Right flanking sequence: Indices 94939 -- 95438
TTTACCCTACACTATAGACGGAGCATGGCTATGAGTATTCTATCTTGTTTACCCTATAGACGGAG
CAATCAGGAGGAGCCTTTATTAGATTCAAGAGAATAGAAGAGTTCGGATCCATACTATTAGCCGG
TTATTATTAGATTAAGGTAATATCTATATCAGAGAAGAGTTCGGATCCATCTAAGACAAGGGTCA
TAGAAGCAATAGAATACCATAGAGCCTACAACAGAGATCTAGTTCGGATCCCTATGGATTAGGAT
GTTCCCTATTAATCAGGATCAGGGCCTGATCACTATCGCTATGGCTATTCAATATTGAATTGATT
AGGATCAAGGATCTAATCGCTATGGCTATTCACATTGATTAAGGTAGTGTCCAAGCATTGATTAG
ATCAGGCCTATAACTATGTTAGAATCTAGGATCGAAGGCCTATAACTATGTTAGAATCATGAGCC
TATGGCAACAGATTGGTTCATCTTGCTAAAGCAAAGAACAGGATG
Found at i:99494 original size:32 final size:32
Alignment explanation
Indices: 99458--99594 Score: 148
Period size: 32 Copynumber: 3.9 Consensus size: 32
99448 GTAGGGTAAA
99458 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
99490 CCCTTTCCTGAGCGTAGCGAAGGGAAGGGCCTGATCCAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAA------G-------GTTAT
*
99535 CCCTTTCCTGAGTGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
99567 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
99595 GGATCCCACA
Statistics
Matches: 90, Mismatches: 2, Indels: 26
0.76 0.02 0.22
Matches are distributed among these distances:
32 58 0.64
38 1 0.01
39 1 0.01
45 30 0.33
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 98958 -- 99457
ATCAGGCCCTGATCCTGATTAATAGGGAACATCCTAATTCATAGGGATCCGAACTAGATCTCTGT
TGTAGGCTCTATGGTATTCTATTGCTTCTATCTTGATTTGTCTTATATTAATTCTATTATATATT
CTAATCTATGCTTGATCTTTCTAACCGGCTTGGATCTTAATCAATGTGAATAGCCATAGCGATTA
GATCCTTGATCCTAATCAATGTGAATAGCCATAGTGATCAGGCCCTGATTCTAATGCATAGGGAA
CATCCTAATTCATAGGGATCCGAACTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTA
TCTTGATTTGTCTTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGA
TCCGAACTATTTTGGACCTAATAAAGGCTCCTCCTGATTGCTCCGTCTATAGAGGAAACAAGATC
TATAGACGGAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 99595 -- 100094
GGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCTGAGCG
TAGCGAAGGGAAGGTTATCCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATAT
ATTGCTTGTATCTCCTTGTGGGTGCAGTCTATATAGACCCTGCCACATCCACCCTATCTTATTAG
GATTCCCAATCCAGTCCGGTTACCGATAGTGCCATCTATTTCCCGAATCCAGTCCGGTTACCGGA
TCCTTATTCATCAATTCTAGTGGTGGATTTGGTATTAAGGCTCCTATAAATGTTATTGGCTCGGA
TCTAAGATTTAGAATAGGATATGGCCACTATATGGCATTGAAAGGGAATAGCAGGCCGATCTATG
ATCTATCTAGAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTC
GATATCCACCCTATCTTCTTTATTCAAGAGCATTTGCATGGTATA
Found at i:99601 original size:32 final size:32
Alignment explanation
Indices: 99533--99601 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
99523 ATCCAAGGTT
* **
99533 ATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTT
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGG
99565 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGG
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGG
99597 ATCCC
1 ATCCC
99602 ACACTATTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGG
Left flanking sequence: Indices 99033 -- 99532
ATGGTATTCTATTGCTTCTATCTTGATTTGTCTTATATTAATTCTATTATATATTCTAATCTATG
CTTGATCTTTCTAACCGGCTTGGATCTTAATCAATGTGAATAGCCATAGCGATTAGATCCTTGAT
CCTAATCAATGTGAATAGCCATAGTGATCAGGCCCTGATTCTAATGCATAGGGAACATCCTAATT
CATAGGGATCCGAACTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTTGATTTG
TCTTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGATCCGAACTAT
TTTGGACCTAATAAAGGCTCCTCCTGATTGCTCCGTCTATAGAGGAAACAAGATCTATAGACGGA
GCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGCCTGATCCAAGGTT
Right flanking sequence: Indices 99602 -- 100101
ACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCTGAGCGTAGCGAA
GGGAAGGTTATCCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATATATTGCTT
GTATCTCCTTGTGGGTGCAGTCTATATAGACCCTGCCACATCCACCCTATCTTATTAGGATTCCC
AATCCAGTCCGGTTACCGATAGTGCCATCTATTTCCCGAATCCAGTCCGGTTACCGGATCCTTAT
TCATCAATTCTAGTGGTGGATTTGGTATTAAGGCTCCTATAAATGTTATTGGCTCGGATCTAAGA
TTTAGAATAGGATATGGCCACTATATGGCATTGAAAGGGAATAGCAGGCCGATCTATGATCTATC
TAGAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCC
ACCCTATCTTCTTTATTCAAGAGCATTTGCATGGTATATGGCTTT
Found at i:105146 original size:64 final size:64
Alignment explanation
Indices: 105045--105549 Score: 422
Period size: 64 Copynumber: 7.2 Consensus size: 64
105035 AGCCATGCCC
* *
105045 CGTAGCAAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
105109 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
** * ** *
105173 CGTAGCGAAGGGAAGGGGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAA-GTAGATC
1 CGTAGCGAAGGGAAGGTTAT--C-C-C-------TTTCCTGAGCGTAGCGAAGGGAAGGT-TAT-
* **
105237 CCACACTATTAGTTTTACTCCG
53 -C-C-C-------TTTCCTGAG
* *
105259 CGTAGCGAAGGGAA-GTAGATCCCCACTGTTCCTGAGCGTAGCGAAGGGAA-GTAGATCCCACAC
1 CGTAGCGAAGGGAAGGT-TAT--CC-CT-TTCCTGAGCGTAGCGAAGGGAAGGT-TAT--C-C-C
* **
105322 TATTAGTTTTACTCCG
56 -------TTTCCTGAG
**
105338 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGAGATCCCCACTGTTCCT
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT--CC-CT-TTCCT
105403 GAG
62 GAG
105406 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
105470 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
105534 CGTAGCGAAGGGAAGG
1 CGTAGCGAAGGGAAGG
105550 GGCCGGCCAG
Statistics
Matches: 391, Mismatches: 22, Indels: 56
0.83 0.05 0.12
Matches are distributed among these distances:
64 169 0.43
65 2 0.01
66 3 0.01
67 2 0.01
68 56 0.14
74 5 0.01
75 49 0.13
76 3 0.01
77 3 0.01
78 2 0.01
79 65 0.17
80 2 0.01
85 4 0.01
86 26 0.07
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (64 bp):
CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
Left flanking sequence: Indices 104545 -- 105044
GAATGATGGACCTTGCCTTACCTTCCAAAGGGTTTCAGCCCCTAATCTCTTTCAAGGCTCATGAT
CCGGTTCGAGAGCCGGCCACTCTAAGAAATGAATTAGATCCTAGATTCTAACATAGTTATAGGCC
TGATCTAATCAATGCTTGGACACTATCTAAATGCCATAGCAACTATGAATTAGCGATTAGATCCT
TGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCTGATTCTAATGCATAGGGAACATCCT
AATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCTCTATGGTATTCTATTGCTTCTA
TCTTGATTTGTCTTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGA
TCCGAACTCTTTTGGGCCTAAGAGAGGCTCCGCAATCATCTAAGAACATAGTTCTAGGCCTGGCC
TGAATGCTCCGTCTATACCGTAGGCTCAATGCCATAGCCATGCCC
Right flanking sequence: Indices 105550 -- 106049
GGCCGGCCAGCACAGTGATGGCCCGTGGCCTGGGGTGCAGTGTGCAACCCCATAATAAGAAGAGT
GGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATATATTGCTTGTAT
CTCCTTGTGGGTGCAGTCTATATATTATAGAGCAGTGCCCATCCTATTGCCACATCCACCCTATC
TTATTATGATTCCCAATAGTGCCATCTATTTCCCGAATCCAGTTATTTCCCGGATCCTTATTCAT
CAATTCTAGTGGTGGATTTGGTATAGGCTCGTATCTTGACCTGGAGCATATAGAAACCCATCTTA
GAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTC
TTCAAGAGCATTTGCATGGTATATGTCTTGGTTTAGTTTTTTCATTTTTAAAAGATTATATTCTC
TCTATGGGCCCTATTAATGAATATTCCCATAGCATTGAATTAGCT
Found at i:105195 original size:32 final size:32
Alignment explanation
Indices: 105045--105188 Score: 261
Period size: 32 Copynumber: 4.5 Consensus size: 32
105035 AGCCATGCCC
*
105045 CGTAGCAAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
105077 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
105109 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
105141 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
105173 CGTAGCGAAGGGAAGG
1 CGTAGCGAAGGGAAGG
105189 GGATCCCACA
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 107 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (32 bp):
CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
Left flanking sequence: Indices 104545 -- 105044
GAATGATGGACCTTGCCTTACCTTCCAAAGGGTTTCAGCCCCTAATCTCTTTCAAGGCTCATGAT
CCGGTTCGAGAGCCGGCCACTCTAAGAAATGAATTAGATCCTAGATTCTAACATAGTTATAGGCC
TGATCTAATCAATGCTTGGACACTATCTAAATGCCATAGCAACTATGAATTAGCGATTAGATCCT
TGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCTGATTCTAATGCATAGGGAACATCCT
AATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCTCTATGGTATTCTATTGCTTCTA
TCTTGATTTGTCTTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGA
TCCGAACTCTTTTGGGCCTAAGAGAGGCTCCGCAATCATCTAAGAACATAGTTCTAGGCCTGGCC
TGAATGCTCCGTCTATACCGTAGGCTCAATGCCATAGCCATGCCC
Right flanking sequence: Indices 105189 -- 105688
GGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTA
CTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCTGAGCGTAGCGAAGGGAAGTAGATCCCA
CACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
GGAGATCCCCACTGTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGG
GAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCAGCACAGTGATGGCCCGTGGC
CTGGGGTGCAGTGTGCAACCCCATAATAAGAAGAGTGGCCCGTGCCTTCCCTTCGCTACGCGGAG
TAAAACTATGGGTTAACCTGGATATATTGCTTGTATCTCCTTGTG
Found at i:105237 original size:43 final size:43
Alignment explanation
Indices: 105172--105352 Score: 268
Period size: 43 Copynumber: 4.4 Consensus size: 43
105162 CCTTTCCTGA
**
105172 GCGTAGCGAAGGGAAGGGGATCCCACACTATTAGTTTTACTCC
1 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
105215 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
1 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
* **
105258 GCGTAGCGAAGGGAAGTAGATCCC-CAC---T-G--TTCCTGA
1 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
105294 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
1 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
105337 GCGTAGCGAAGGGAAG
1 GCGTAGCGAAGGGAAG
105353 GTTATCCCTT
Statistics
Matches: 123, Mismatches: 8, Indels: 14
0.85 0.06 0.10
Matches are distributed among these distances:
36 28 0.23
37 3 0.02
38 1 0.01
39 1 0.01
40 1 0.01
41 1 0.01
42 3 0.02
43 85 0.69
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (43 bp):
GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
Left flanking sequence: Indices 104672 -- 105171
GCCTGATCTAATCAATGCTTGGACACTATCTAAATGCCATAGCAACTATGAATTAGCGATTAGAT
CCTTGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCTGATTCTAATGCATAGGGAACAT
CCTAATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCTCTATGGTATTCTATTGCTT
CTATCTTGATTTGTCTTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGAT
GGATCCGAACTCTTTTGGGCCTAAGAGAGGCTCCGCAATCATCTAAGAACATAGTTCTAGGCCTG
GCCTGAATGCTCCGTCTATACCGTAGGCTCAATGCCATAGCCATGCCCCGTAGCAAAGGGAAGGT
TATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
ATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
Right flanking sequence: Indices 105353 -- 105852
GTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGAGATCCCCACTGTTCCTGAGCGTAGCGAAGGG
AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAA
GGGGCCGGCCAGCACAGTGATGGCCCGTGGCCTGGGGTGCAGTGTGCAACCCCATAATAAGAAGA
GTGGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATATATTGCTTGT
ATCTCCTTGTGGGTGCAGTCTATATATTATAGAGCAGTGCCCATCCTATTGCCACATCCACCCTA
TCTTATTATGATTCCCAATAGTGCCATCTATTTCCCGAATCCAGTTATTTCCCGGATCCTTATTC
ATCAATTCTAGTGGTGGATTTGGTATAGGCTCGTATCTTGACCTG
Found at i:105310 original size:79 final size:75
Alignment explanation
Indices: 105215--105452 Score: 321
Period size: 79 Copynumber: 3.2 Consensus size: 75
105205 GTTTTACTCC
105215 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAA-GTAGAT
1 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGT-GAT
105279 CCCCACTGTTCCTGA
65 --CC-CT-TTCCTGA
*
105294 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTTATC
1 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTGATC
105359 CCTTTCCTGA
66 CCTTTCCTGA
* * ** *
105369 GCGTAGCGAAGGGAAGGAGATCCC-CAC---T-G--TTCCTGAGCGTAGCGAAGGGAAGGTTATC
1 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTGATC
105427 CCTTTCCTGA
66 CCTTTCCTGA
105437 GCGTAGCGAAGGGAAG
1 GCGTAGCGAAGGGAAG
105453 GTTATCCCTT
Statistics
Matches: 153, Mismatches: 5, Indels: 13
0.89 0.03 0.08
Matches are distributed among these distances:
68 52 0.34
70 1 0.01
71 1 0.01
74 3 0.02
75 30 0.20
76 2 0.01
77 2 0.01
79 60 0.39
80 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.22
Consensus pattern (75 bp):
GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTGATC
CCTTTCCTGA
Left flanking sequence: Indices 104715 -- 105214
AACTATGAATTAGCGATTAGATCCTTGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCT
GATTCTAATGCATAGGGAACATCCTAATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAG
GCTCTATGGTATTCTATTGCTTCTATCTTGATTTGTCTTAGATGGATCCGAGCTCTTCTATGCTA
TAGATATTCCCTGAACTTAGATGGATCCGAACTCTTTTGGGCCTAAGAGAGGCTCCGCAATCATC
TAAGAACATAGTTCTAGGCCTGGCCTGAATGCTCCGTCTATACCGTAGGCTCAATGCCATAGCCA
TGCCCCGTAGCAAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCC
TGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCT
GAGCGTAGCGAAGGGAAGGGGATCCCACACTATTAGTTTTACTCC
Right flanking sequence: Indices 105453 -- 105952
GTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
TTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCAGCACAGTGATGGCCCGTGGCCTGG
GGTGCAGTGTGCAACCCCATAATAAGAAGAGTGGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAA
ACTATGGGTTAACCTGGATATATTGCTTGTATCTCCTTGTGGGTGCAGTCTATATATTATAGAGC
AGTGCCCATCCTATTGCCACATCCACCCTATCTTATTATGATTCCCAATAGTGCCATCTATTTCC
CGAATCCAGTTATTTCCCGGATCCTTATTCATCAATTCTAGTGGTGGATTTGGTATAGGCTCGTA
TCTTGACCTGGAGCATATAGAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCG
CTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTT
Found at i:105378 original size:32 final size:32
Alignment explanation
Indices: 105337--105549 Score: 372
Period size: 32 Copynumber: 6.5 Consensus size: 32
105327 GTTTTACTCC
105337 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
**
105369 GCGTAGCGAAGGGAAGGAGATCCCCACTGTTCCTGA
1 GCGTAGCGAAGGGAAGGTTAT--CC-CT-TTCCTGA
105405 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
105437 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
105469 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
105501 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
105533 GCGTAGCGAAGGGAAGG
1 GCGTAGCGAAGGGAAGG
105550 GGCCGGCCAG
Statistics
Matches: 173, Mismatches: 4, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
32 139 0.80
33 2 0.01
34 4 0.02
35 2 0.01
36 26 0.15
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.22
Consensus pattern (32 bp):
GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
Left flanking sequence: Indices 104837 -- 105336
TGTTGTAGGCTCTATGGTATTCTATTGCTTCTATCTTGATTTGTCTTAGATGGATCCGAGCTCTT
CTATGCTATAGATATTCCCTGAACTTAGATGGATCCGAACTCTTTTGGGCCTAAGAGAGGCTCCG
CAATCATCTAAGAACATAGTTCTAGGCCTGGCCTGAATGCTCCGTCTATACCGTAGGCTCAATGC
CATAGCCATGCCCCGTAGCAAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTAT
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATC
CCTTTCCTGAGCGTAGCGAAGGGAAGGGGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGG
GAAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCT
GAGCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
Right flanking sequence: Indices 105550 -- 106049
GGCCGGCCAGCACAGTGATGGCCCGTGGCCTGGGGTGCAGTGTGCAACCCCATAATAAGAAGAGT
GGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATATATTGCTTGTAT
CTCCTTGTGGGTGCAGTCTATATATTATAGAGCAGTGCCCATCCTATTGCCACATCCACCCTATC
TTATTATGATTCCCAATAGTGCCATCTATTTCCCGAATCCAGTTATTTCCCGGATCCTTATTCAT
CAATTCTAGTGGTGGATTTGGTATAGGCTCGTATCTTGACCTGGAGCATATAGAAACCCATCTTA
GAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTC
TTCAAGAGCATTTGCATGGTATATGTCTTGGTTTAGTTTTTTCATTTTTAAAAGATTATATTCTC
TCTATGGGCCCTATTAATGAATATTCCCATAGCATTGAATTAGCT
Found at i:107673 original size:75 final size:74
Alignment explanation
Indices: 107564--107772 Score: 255
Period size: 75 Copynumber: 2.8 Consensus size: 74
107554 ACATCTGTGG
*
107564 ATCCCACCAAATCATTCGACCTGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTGGA
1 ATCCCACCAAATC-TTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTGGA
*
107629 TCTAT-AAAGA
65 AC-ATCAAAGA
* * **
107639 ATCTCTCCGAAATCTTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTTTA
1 ATCCCACC-AAATCTTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTGGA
*** *
107704 ACATCCGTGG
65 ACATCAAAGA
*
107714 ATCCCACC--TTCTTCGACCCGGCGGCTGCTCGCT-TCTTGATCAGTGATTCACCAGCCACT
1 ATCCCACCAAATCTTCGACCCGGCGGCTGCTCGCTCT-TTGATCAGTGATTCACCAGCCACT
107773 ACATCCAGGG
Statistics
Matches: 118, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
71 1 0.01
72 48 0.41
74 2 0.02
75 62 0.53
76 5 0.04
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.27
Consensus pattern (74 bp):
ATCCCACCAAATCTTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTGGAA
CATCAAAGA
Left flanking sequence: Indices 107064 -- 107563
GCCTTAAATAGAAATAAAGAAAGAAACACGTCGCCCGAAACTAATTAATAAAGGTGAGGGAGTGT
TATCAAGAGAAATCGGCGAATGGTTGATACATTGCTCGCTGATATTGCTTCGTCTATCACTATTT
GTTCTCCTTTTTATTCATTCGTTCCCCGGTGCTCATCTTCTGAGGCGCTCATAAAGTGATTGTTC
GATCCGCCTGCAAAGAACTAACTGTTATGTAATAATTTATTTCACCACAATATTCGTTCTTTTGG
GGTTAATGTTCTCAATGGTGGATTGATCATTCGCTATCCTTTTAGTTCTGGGAGGACTCCCTGGA
GGAGGAGTTATAAAACCTGCGATTGCTACTGAATAACCTCCTTTTACTTCATCAATGATAAACCC
TTTCACCTTTTTATTCGTTCGCCAAATCTTGTTCGGTTCCATCCAAGCTCGGTTTTGTCTGAAGA
TTTGTGGAGAAAGAATCAGTGGTTCACCAGCCACTACATCTGTGG
Right flanking sequence: Indices 107773 -- 108272
ACATCCAGGGATCCCACCTTATTATCAAACCTGGCGGCTCGGTTGATTGGCACTCTTGTAAGCTC
ATCTTGCATACGAATTATTGGGGTCCCAGGTCCTGCATCCACCAAGAACATTTTTTCCCTCGAGC
GTAGAACTGGAGATTGCGAAGCGTTTCCACATAATAAGGGAGAACTGGAATTAGATCTTGGAAAT
AATCGACTCAAATAGATGCTCATCATAAGCTCCTTTCTTGTTCCTTCTCCTCTTCCTATTGATCA
GAAGCATCTCCGGGCAGCCAATATAAAGAGTTGACCGACCGCTAAGATTCTCGATCTCTTAATGA
ATCTGTTCGAGAGAGCTCGATCGAAGGAGCATGAAGGAGCTCAGGAGGGCTAGATCGATCGGATG
TTCTTAGTTTCAAGTGCTCGCTGAAATGTCTCATTATACCCATTAACGATGATGCTCCATGCTCG
AAATGATTGGTATTCAAATGCATGTTCTAGGGATGAGAGGAAGAG
Found at i:107764 original size:72 final size:70
Alignment explanation
Indices: 107533--107790 Score: 288
Period size: 72 Copynumber: 3.6 Consensus size: 70
107523 TGGAGAAAGA
* * *
107533 ATCAGTGGTTCACCAGCCACTACATCTGTGGATCCCACCAAATCATTCGACCTGGCGGCTGCTCG
1 ATCAGTGATTCACCAGCCACTACATCCGTGGATCCCACC-AATC-TTCGACCCGGCGGCTGCTCG
107598 CTCTTTG
64 CTCTTTG
** ** * * *
107605 ATCAGTGATTCACCAGCCACTGGATCTATAAAGAATCTCTCCGAAATCTTCGACCCGGCGGCTGC
1 ATCAGTGATTCACCAGCCACTACATCCGT---GGATCCCACC--AATCTTCGACCCGGCGGCTGC
107670 TCGCTCTTTG
61 TCGCTCTTTG
*
107680 ATCAGTGATTCACCAGCCACTTTAACATCCGTGGATCCCACC-TTCTTCGACCCGGCGGCTGCTC
1 ATCAGTGATTCACCAGCCAC--T-ACATCCGTGGATCCCACCAATCTTCGACCCGGCGGCTGCTC
107744 GCT-TCTTG
63 GCTCT-TTG
107752 ATCAGTGATTCACCAGCCACTACATCCAG-GGATCCCACC
1 ATCAGTGATTCACCAGCCACTACATCC-GTGGATCCCACC
107791 TTATTATCAA
Statistics
Matches: 161, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
69 16 0.10
70 2 0.01
71 1 0.01
72 72 0.45
75 60 0.37
76 5 0.03
77 1 0.01
78 4 0.02
ACGTcount: A:0.21, C:0.34, G:0.19, T:0.26
Consensus pattern (70 bp):
ATCAGTGATTCACCAGCCACTACATCCGTGGATCCCACCAATCTTCGACCCGGCGGCTGCTCGCT
CTTTG
Left flanking sequence: Indices 107033 -- 107532
GCAAGAGCCTTTTTTATCACTTCAATATAGGGCCTTAAATAGAAATAAAGAAAGAAACACGTCGC
CCGAAACTAATTAATAAAGGTGAGGGAGTGTTATCAAGAGAAATCGGCGAATGGTTGATACATTG
CTCGCTGATATTGCTTCGTCTATCACTATTTGTTCTCCTTTTTATTCATTCGTTCCCCGGTGCTC
ATCTTCTGAGGCGCTCATAAAGTGATTGTTCGATCCGCCTGCAAAGAACTAACTGTTATGTAATA
ATTTATTTCACCACAATATTCGTTCTTTTGGGGTTAATGTTCTCAATGGTGGATTGATCATTCGC
TATCCTTTTAGTTCTGGGAGGACTCCCTGGAGGAGGAGTTATAAAACCTGCGATTGCTACTGAAT
AACCTCCTTTTACTTCATCAATGATAAACCCTTTCACCTTTTTATTCGTTCGCCAAATCTTGTTC
GGTTCCATCCAAGCTCGGTTTTGTCTGAAGATTTGTGGAGAAAGA
Right flanking sequence: Indices 107791 -- 108290
TTATTATCAAACCTGGCGGCTCGGTTGATTGGCACTCTTGTAAGCTCATCTTGCATACGAATTAT
TGGGGTCCCAGGTCCTGCATCCACCAAGAACATTTTTTCCCTCGAGCGTAGAACTGGAGATTGCG
AAGCGTTTCCACATAATAAGGGAGAACTGGAATTAGATCTTGGAAATAATCGACTCAAATAGATG
CTCATCATAAGCTCCTTTCTTGTTCCTTCTCCTCTTCCTATTGATCAGAAGCATCTCCGGGCAGC
CAATATAAAGAGTTGACCGACCGCTAAGATTCTCGATCTCTTAATGAATCTGTTCGAGAGAGCTC
GATCGAAGGAGCATGAAGGAGCTCAGGAGGGCTAGATCGATCGGATGTTCTTAGTTTCAAGTGCT
CGCTGAAATGTCTCATTATACCCATTAACGATGATGCTCCATGCTCGAAATGATTGGTATTCAAA
TGCATGTTCTAGGGATGAGAGGAAGAGCATGTTGTTGGCAAGCGT
Found at i:109756 original size:63 final size:63
Alignment explanation
Indices: 109679--110749 Score: 2142
Period size: 63 Copynumber: 17.0 Consensus size: 63
109669 CTGAATCCAA
109679 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
109742 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
109805 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
109868 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
109931 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
109994 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110057 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110120 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110183 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110246 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110309 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110372 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110435 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110498 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110561 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110624 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110687 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
1 AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
110750 GTGCGGAATC
Statistics
Matches: 1008, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 1008 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (63 bp):
AATAAAGACTAATATTATGAATTAGCCTATTCTTGGATCTAATCAATACTAATATAAGATTTG
Left flanking sequence: Indices 109179 -- 109678
CTGAGATCTGTTACTATCCCTTTCAAGGTTATCGGTTCGGATCCGATAGCGAGTCTATTGCTGGG
TCGATCGGAAGGGGGGAAAACACCTCCCCCCCCCCCCCCCACCCCCAGGGCCCTACCTACTACGA
CGGGGCCACAGGCCGGCCCATCCCCCCTCCACAGATCCAAGGGTCGTGGTCCTTTATTTATTCAT
CTGATAGGGCACTATTCATTTCTTGATAGGGGGCTAGGCCATGGAACCAAAGAGGGCACTATTAG
TTGAGCTGATTCTTCGGTAAAAAGGTGAGGTCCGGCGAGGGTTCTGTTTATTGTTCACATGACGA
TGACCCGGGAATAAAGAATAGTAAAGGCTGAGCCTGGCTGAGGGAGAGCTCGCTCGGCAGCAGGG
TGTGCTCTAGAGTCAGTCTCTCCGGCCAGTCCTTTTTCAGGCTCCGGATGGGGCCTACCGGCAGG
TCGGACAGATAGTAATTCTTTCAGTGTCCCGAATCCTGAATCCAA
Right flanking sequence: Indices 110750 -- 111249
GTGCGGAATCGGGTTTTGTTCGGGAGGGCAGGCCAGTAATATTAACCTACCTTTTCGGGGTTTGG
AAATAACCAAATAAAGAGGTGTGGGATTGGACGTAAAAGGAAGGCCGAAAAGGTCGATAGCGTGA
AAGCCGGTGGTGTATTGAATATCCCAGAGAAGGAGGGATCGGAACTCGAAGGAGGTGCAGAAGAA
GCAGTGCGAATTGAAGCCACCGAATCAGGTGTTCCAAGTTCTATTGAATCGATGGAAGTAAGATC
GGATGGTCACTGCCCCAGGGGGATTAAGGCTTGGATCTTGTGGGTTGATTTCGGCTAAAAAGCAG
CAGATTCGGAACTGGAAGAAAGGGATTTCGAATCGTAATATTCGGCCAAAGTGCTATTCCGGTTG
GTGTCCGACTGACGGATAGCTTATCAACTCGTAGATTAGCGCATGTTTCGTTGACGGAATAAGAC
TATTTAGGTTCCGAAATAGGACTAAAATGATGTAGTGGAATCGGT
Found at i:125751 original size:21 final size:19
Alignment explanation
Indices: 125726--125765 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
125716 GGTATATTTA
125726 TTTTGTCTAGTTCTTTCGAAT
1 TTTTGTCTAGTT-TTT-GAAT
125747 TTTTGTCTAGTTTTTGAAT
1 TTTTGTCTAGTTTTTGAAT
125766 CTTGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 3 0.16
21 12 0.63
ACGTcount: A:0.15, C:0.10, G:0.15, T:0.60
Consensus pattern (19 bp):
TTTTGTCTAGTTTTTGAAT
Left flanking sequence: Indices 125226 -- 125725
ATCGCATAAATCTATATGTAATGTCCCGGCAAGGGGTTCGGGAAGAGGCACTCGCAACGGTTCAA
TATTCATTCGGAAGGGAAAGAACTCCATAGAGGCACTCGCATGGTAGTAATTCAACCCGTCAAAG
CCTTCCGGGATGGATCTCAGGTTCAAGGATCCGATCCAAAGTGTAACGAAGGGAAGGGCATGTTG
TATATGCATATACACTATGGGCCCCACCACTATTGGCAAGAGTGCAGTGGCCGGGCTCCCGGATC
ACTTCTGTCATTAATAGAGTGTGGATCTGGTATTAAGGCTCCTATAAAGGTTCTTGGCTCGGATC
TTCTCTATCGATTTAGAATAGGATATGGCCACATTGAAAGGGAATAGCAGGCCGATCTATGATCT
ATCTAGAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATA
TCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATTTA
Right flanking sequence: Indices 125766 -- 126265
CTTGAAAAGATTCTATATTGATTAAGATTCCCCTATTGATGAAGATTCCCATATTGATGAATCCT
TTGAAGGCTATTGTACAACATCCAGTCGTATGGACAAGAATCCGAGTGTGGCTCTGAACTTGACT
CGCACGGAGACGTGAGCCGCTTCTTTTCCAATCCTTTTGATAATGATAATTAGTAGGGGCATCTC
TTTACCAGCGCTTCGCTCATCATATAGCTTCTACTAGATAGCCCATGCTATCTAGTAGCTGCAGG
AGCTAAGTGCTATAGCTAAGTGTTATAGCAGCTGCAGGAGCTAAGTGCTATAGCTAATATCGCAC
GCCGCTTACATAGCAGTTTTTACTGTGAAAAGTAGCTAGGAGTTCTTGAGTTGCTCGGTCCCTTG
GTTGGGGTCCCCTAGGGGGCTTCGCCCCGCCATCCGAGTAGGGGTATCCCTTTTTCACTTATATA
GAAAGATGTGTTTTCGGACGGACAATGAATTGGTTTTGGATTCTG
Found at i:125804 original size:18 final size:18
Alignment explanation
Indices: 125780--125826 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
125770 AAAAGATTCT
*
125780 ATATTGATTAAGATTCCC
1 ATATTGATGAAGATTCCC
*
125798 CTATTGATGAAGATTCCC
1 ATATTGATGAAGATTCCC
125816 ATATTGATGAA
1 ATATTGATGAA
125827 TCCTTTGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (18 bp):
ATATTGATGAAGATTCCC
Left flanking sequence: Indices 125280 -- 125779
CAACGGTTCAATATTCATTCGGAAGGGAAAGAACTCCATAGAGGCACTCGCATGGTAGTAATTCA
ACCCGTCAAAGCCTTCCGGGATGGATCTCAGGTTCAAGGATCCGATCCAAAGTGTAACGAAGGGA
AGGGCATGTTGTATATGCATATACACTATGGGCCCCACCACTATTGGCAAGAGTGCAGTGGCCGG
GCTCCCGGATCACTTCTGTCATTAATAGAGTGTGGATCTGGTATTAAGGCTCCTATAAAGGTTCT
TGGCTCGGATCTTCTCTATCGATTTAGAATAGGATATGGCCACATTGAAAGGGAATAGCAGGCCG
ATCTATGATCTATCTAGAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTT
CTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATTTATTTTGTCTA
GTTCTTTCGAATTTTTGTCTAGTTTTTGAATCTTGAAAAGATTCT
Right flanking sequence: Indices 125827 -- 126326
TCCTTTGAAGGCTATTGTACAACATCCAGTCGTATGGACAAGAATCCGAGTGTGGCTCTGAACTT
GACTCGCACGGAGACGTGAGCCGCTTCTTTTCCAATCCTTTTGATAATGATAATTAGTAGGGGCA
TCTCTTTACCAGCGCTTCGCTCATCATATAGCTTCTACTAGATAGCCCATGCTATCTAGTAGCTG
CAGGAGCTAAGTGCTATAGCTAAGTGTTATAGCAGCTGCAGGAGCTAAGTGCTATAGCTAATATC
GCACGCCGCTTACATAGCAGTTTTTACTGTGAAAAGTAGCTAGGAGTTCTTGAGTTGCTCGGTCC
CTTGGTTGGGGTCCCCTAGGGGGCTTCGCCCCGCCATCCGAGTAGGGGTATCCCTTTTTCACTTA
TATAGAAAGATGTGTTTTCGGACGGACAATGAATTGGTTTTGGATTCTGATGAATCCGAAATTAG
CAATAGAATTGCGTTTCCCGCATAAACCGTAGCGGGGGGACTGGA
Found at i:126044 original size:13 final size:13
Alignment explanation
Indices: 126026--126082 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
126016 TAGCTGCAGG
126026 AGCTAAGTGCTAT
1 AGCTAAGTGCTAT
*
126039 AGCTAAGTGTTAT
1 AGCTAAGTGCTAT
*
126052 AGC--AGCTGC-AGG
1 AGCTAAG-TGCTA-T
126064 AGCTAAGTGCTAT
1 AGCTAAGTGCTAT
126077 AGCTAA
1 AGCTAA
126083 TATCGCACGC
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
11 3 0.09
12 5 0.14
13 24 0.69
14 3 0.09
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (13 bp):
AGCTAAGTGCTAT
Left flanking sequence: Indices 125526 -- 126025
CCTATAAAGGTTCTTGGCTCGGATCTTCTCTATCGATTTAGAATAGGATATGGCCACATTGAAAG
GGAATAGCAGGCCGATCTATGATCTATCTAGAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCA
TGCATCTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTAT
ATTTATTTTGTCTAGTTCTTTCGAATTTTTGTCTAGTTTTTGAATCTTGAAAAGATTCTATATTG
ATTAAGATTCCCCTATTGATGAAGATTCCCATATTGATGAATCCTTTGAAGGCTATTGTACAACA
TCCAGTCGTATGGACAAGAATCCGAGTGTGGCTCTGAACTTGACTCGCACGGAGACGTGAGCCGC
TTCTTTTCCAATCCTTTTGATAATGATAATTAGTAGGGGCATCTCTTTACCAGCGCTTCGCTCAT
CATATAGCTTCTACTAGATAGCCCATGCTATCTAGTAGCTGCAGG
Right flanking sequence: Indices 126083 -- 126582
TATCGCACGCCGCTTACATAGCAGTTTTTACTGTGAAAAGTAGCTAGGAGTTCTTGAGTTGCTCG
GTCCCTTGGTTGGGGTCCCCTAGGGGGCTTCGCCCCGCCATCCGAGTAGGGGTATCCCTTTTTCA
CTTATATAGAAAGATGTGTTTTCGGACGGACAATGAATTGGTTTTGGATTCTGATGAATCCGAAA
TTAGCAATAGAATTGCGTTTCCCGCATAAACCGTAGCGGGGGGACTGGACGTCGTGGAATCCGAG
ACAATCTCTGCTGCTTTCAAGCAACAGGAAGCACTGAAGATGCTGCCACGGGTCGCGCCCCTATT
CATTCATCTCATTGAATAGGGGGGGACTGGACGTCAAATCCGAGATGATCTCAGAGCAACGCACG
GAAGGACTGGGGATCCTGAAGAACCGAACGAACAACCGGAGAAAGAATGCAATGCCTCTTCCACT
TTATCTTTCGGGCTGGAAGAGCGAAAAACGACTTCGCCCTTAATT
Found at i:129220 original size:64 final size:64
Alignment explanation
Indices: 129119--129444 Score: 330
Period size: 64 Copynumber: 4.8 Consensus size: 64
129109 GGTTAACCCT
* *
129119 CGTAGCAAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
129183 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
** * ** *
129247 CGTAGCGAAGGGAAGGGGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAA-GTAGATC
1 CGTAGCGAAGGGAAGGTTAT--C-C-C-------TTTCCTGAGCGTAGCGAAGGGAAGGT-TAT-
* **
129311 CCACACTATTAGTTTTACTCCG
53 -C-C-C-------TTTCCTGAG
129333 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
129397 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
129445 GGCCGGCCAG
Statistics
Matches: 218, Mismatches: 20, Indels: 48
0.76 0.07 0.17
Matches are distributed among these distances:
64 135 0.62
66 1 0.00
67 1 0.00
68 1 0.00
71 1 0.00
72 1 0.00
73 1 0.00
74 2 0.01
75 43 0.20
76 2 0.01
77 1 0.00
78 1 0.00
79 1 0.00
82 1 0.00
83 1 0.00
84 1 0.00
86 24 0.11
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (64 bp):
CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
Left flanking sequence: Indices 128619 -- 129118
TTGTTGGTAAAGCCGCGAATCAGCCACCGCACCTTATCTAATTCAATGCCATAGGCTCATGATCC
GGTTCGAGAGCCGGCCACTCTAAGAAATGAATTAGATCCTAGATTCTAACATAGTTATAGGCCTG
ATCTAATCAATGCTTGGACACTATCTAAATGCCATAGCAACTATGAATTAGCGATTAGATCCTTG
ATCCTAATCAATTCAATAAAAGGCACAGTGACAGTGATCTGGCCCTGATCCTGATTAATAGGATA
GTGATTAGATCCTAATTGCGATAGTCTCTATACTATTAGATTGCTTCTATTTTGATTTGTCTTAG
ATGGATCCGAACTCTTCTAATTGCGATATATTCCCTTAACTTAGATGGATCCGAACTATTTTGGA
CCTAATAAAGGCTCCTATCTAGGCCTGAATACTATTCTATAGTTGTAGGCCCGATCTAATACTAT
TTCGAACCGGCTTAATCTCATAGCCATGCCCCGTAGGTTAACCCT
Right flanking sequence: Indices 129445 -- 129944
GGCCGGCCAGCATAGTGATGGCCCGTGGTTTATATATAACATAGTATATATCCACCTTATCTTCA
GGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGC
CCCACCACTATTGGCAAGAGTGCAGTGGCCGGGCTCCCGGATCACCTCTGTCATTAATAGAGTGT
GGCAGAGTCCGATCTATATTCACCCTATTTTAGAACATTGGAACATCTATAGTCACATATATTGT
AATTCTTAATTTTGAAAAGATTCTATATTGATTAAGATTCCCATATTGATTCATTCCGTCACACA
GGATCAACACGAAGCAGCCGCATCCGTTGCCATCCGGATCAATACGGACAAGAATTGAAGATGCT
AAGTGCAGGGCCACAGTGAGATACTCATATTTATTCGTACTACCGGTACAACACCCTGAAAAGCC
GGCTTCTCCCGTAGATCCACGGGAGAGCTGAATTCCCAATAAAGG
Found at i:129269 original size:32 final size:32
Alignment explanation
Indices: 129119--129262 Score: 261
Period size: 32 Copynumber: 4.5 Consensus size: 32
129109 GGTTAACCCT
*
129119 CGTAGCAAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
129151 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
129183 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
129215 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
129247 CGTAGCGAAGGGAAGG
1 CGTAGCGAAGGGAAGG
129263 GGATCCCACA
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 107 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (32 bp):
CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
Left flanking sequence: Indices 128619 -- 129118
TTGTTGGTAAAGCCGCGAATCAGCCACCGCACCTTATCTAATTCAATGCCATAGGCTCATGATCC
GGTTCGAGAGCCGGCCACTCTAAGAAATGAATTAGATCCTAGATTCTAACATAGTTATAGGCCTG
ATCTAATCAATGCTTGGACACTATCTAAATGCCATAGCAACTATGAATTAGCGATTAGATCCTTG
ATCCTAATCAATTCAATAAAAGGCACAGTGACAGTGATCTGGCCCTGATCCTGATTAATAGGATA
GTGATTAGATCCTAATTGCGATAGTCTCTATACTATTAGATTGCTTCTATTTTGATTTGTCTTAG
ATGGATCCGAACTCTTCTAATTGCGATATATTCCCTTAACTTAGATGGATCCGAACTATTTTGGA
CCTAATAAAGGCTCCTATCTAGGCCTGAATACTATTCTATAGTTGTAGGCCCGATCTAATACTAT
TTCGAACCGGCTTAATCTCATAGCCATGCCCCGTAGGTTAACCCT
Right flanking sequence: Indices 129263 -- 129762
GGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTA
CTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCC
TGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCAGCAT
AGTGATGGCCCGTGGTTTATATATAACATAGTATATATCCACCTTATCTTCAGGGTTATCCCTTT
CCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGCCCCACCACTATTG
GCAAGAGTGCAGTGGCCGGGCTCCCGGATCACCTCTGTCATTAATAGAGTGTGGCAGAGTCCGAT
CTATATTCACCCTATTTTAGAACATTGGAACATCTATAGTCACATATATTGTAATTCTTAATTTT
GAAAAGATTCTATATTGATTAAGATTCCCATATTGATTCATTCCG
Found at i:129311 original size:43 final size:43
Alignment explanation
Indices: 129246--129348 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
129236 CCTTTCCTGA
*
129246 GCGTAGCGAAGGGAAGGGGATCCCACACTATTAGTTTTACTCC
1 GCGTAGCGAAGGGAAGGAGATCCCACACTATTAGTTTTACTCC
*
129289 GCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
1 GCGTAGCGAAGGGAAGGAGATCCCACACTATTAGTTTTACTCC
129332 GCGTAGCGAAGGGAAGG
1 GCGTAGCGAAGGGAAGG
129349 TTATCCCTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (43 bp):
GCGTAGCGAAGGGAAGGAGATCCCACACTATTAGTTTTACTCC
Left flanking sequence: Indices 128746 -- 129245
CTGATCTAATCAATGCTTGGACACTATCTAAATGCCATAGCAACTATGAATTAGCGATTAGATCC
TTGATCCTAATCAATTCAATAAAAGGCACAGTGACAGTGATCTGGCCCTGATCCTGATTAATAGG
ATAGTGATTAGATCCTAATTGCGATAGTCTCTATACTATTAGATTGCTTCTATTTTGATTTGTCT
TAGATGGATCCGAACTCTTCTAATTGCGATATATTCCCTTAACTTAGATGGATCCGAACTATTTT
GGACCTAATAAAGGCTCCTATCTAGGCCTGAATACTATTCTATAGTTGTAGGCCCGATCTAATAC
TATTTCGAACCGGCTTAATCTCATAGCCATGCCCCGTAGGTTAACCCTCGTAGCAAAGGGAAGGT
TATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
ATCCCTTTCCTGAGTGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
Right flanking sequence: Indices 129349 -- 129848
TTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGT
TATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCAGCATAGTGATGGCCCGTGGTTTATA
TATAACATAGTATATATCCACCTTATCTTCAGGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAG
GGCATGTTGTATATGCATATACACTATGGGCCCCACCACTATTGGCAAGAGTGCAGTGGCCGGGC
TCCCGGATCACCTCTGTCATTAATAGAGTGTGGCAGAGTCCGATCTATATTCACCCTATTTTAGA
ACATTGGAACATCTATAGTCACATATATTGTAATTCTTAATTTTGAAAAGATTCTATATTGATTA
AGATTCCCATATTGATTCATTCCGTCACACAGGATCAACACGAAGCAGCCGCATCCGTTGCCATC
CGGATCAATACGGACAAGAATTGAAGATGCTAAGTGCAGGGCCAC
Found at i:129373 original size:32 final size:32
Alignment explanation
Indices: 129332--129444 Score: 226
Period size: 32 Copynumber: 3.5 Consensus size: 32
129322 GTTTTACTCC
129332 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
129364 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
129396 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
129428 GCGTAGCGAAGGGAAGG
1 GCGTAGCGAAGGGAAGG
129445 GGCCGGCCAG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 81 1.00
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.22
Consensus pattern (32 bp):
GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
Left flanking sequence: Indices 128832 -- 129331
AAAGGCACAGTGACAGTGATCTGGCCCTGATCCTGATTAATAGGATAGTGATTAGATCCTAATTG
CGATAGTCTCTATACTATTAGATTGCTTCTATTTTGATTTGTCTTAGATGGATCCGAACTCTTCT
AATTGCGATATATTCCCTTAACTTAGATGGATCCGAACTATTTTGGACCTAATAAAGGCTCCTAT
CTAGGCCTGAATACTATTCTATAGTTGTAGGCCCGATCTAATACTATTTCGAACCGGCTTAATCT
CATAGCCATGCCCCGTAGGTTAACCCTCGTAGCAAAGGGAAGGTTATCCCTTTCCTGAGTGTAGC
GAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGTGTAGCG
AAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGATCCCACACTATTAGTTTTACT
CCGCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
Right flanking sequence: Indices 129445 -- 129944
GGCCGGCCAGCATAGTGATGGCCCGTGGTTTATATATAACATAGTATATATCCACCTTATCTTCA
GGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGC
CCCACCACTATTGGCAAGAGTGCAGTGGCCGGGCTCCCGGATCACCTCTGTCATTAATAGAGTGT
GGCAGAGTCCGATCTATATTCACCCTATTTTAGAACATTGGAACATCTATAGTCACATATATTGT
AATTCTTAATTTTGAAAAGATTCTATATTGATTAAGATTCCCATATTGATTCATTCCGTCACACA
GGATCAACACGAAGCAGCCGCATCCGTTGCCATCCGGATCAATACGGACAAGAATTGAAGATGCT
AAGTGCAGGGCCACAGTGAGATACTCATATTTATTCGTACTACCGGTACAACACCCTGAAAAGCC
GGCTTCTCCCGTAGATCCACGGGAGAGCTGAATTCCCAATAAAGG
Found at i:130064 original size:32 final size:32
Alignment explanation
Indices: 130028--130151 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
130018 GTAGGGTAAA
130028 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
130060 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
130092 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
130124 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
130152 GCCTGATCCA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 129528 -- 130027
GTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGCCCCACCACTATTGGCAAG
AGTGCAGTGGCCGGGCTCCCGGATCACCTCTGTCATTAATAGAGTGTGGCAGAGTCCGATCTATA
TTCACCCTATTTTAGAACATTGGAACATCTATAGTCACATATATTGTAATTCTTAATTTTGAAAA
GATTCTATATTGATTAAGATTCCCATATTGATTCATTCCGTCACACAGGATCAACACGAAGCAGC
CGCATCCGTTGCCATCCGGATCAATACGGACAAGAATTGAAGATGCTAAGTGCAGGGCCACAGTG
AGATACTCATATTTATTCGTACTACCGGTACAACACCCTGAAAAGCCGGCTTCTCCCGTAGATCC
ACGGGAGAGCTGAATTCCCAATAAAGGCTCCTCCTGATTGCTCCGTCTATAGAGGAAACAAGATC
TATAGACGGAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 130152 -- 130651
GCCTGATCCAATAGTGATCTCACTGTTGCATTTATCGAGATGACACTATCTTAGTCAGGGATCCG
GCACTATCACTATCTTGGATCTAATATAAATGCGATAGGACATAGTATGGATCCGATCTATTCTC
TATAGTCTATATCCACCCTTGGATCTAAGGCTCTTAATAGCCATAGCGATAGCTACTAATAGAAT
AGCAATAGCCTTATATCTACCTATTAAGATAGTGCCATCTGATAGACAATAGCTAATAGAATAAG
CTGATAGGATATGGCTCGTATCTATAGATGCGATATTCACCCTATCTTAGAACATTATAACATCT
ATTTCTCATAAGATTTTGTTTTCAGGAATCACTTCCGGCTATGGAAAGAACCGAACCTTCGAAAA
AAAGGGGCCGGGCCATTGAAAGCTGCATCGCTCGATGGGCATCTCTTTTATCCCCTCTTTCTTAG
AGTGCTCGCACTCGGCCCGCTGGCCGACAGGCTTGAGCTGTGCTT
Found at i:135978 original size:32 final size:32
Alignment explanation
Indices: 135937--136156 Score: 440
Period size: 32 Copynumber: 6.9 Consensus size: 32
135927 AGTGGCCGGC
135937 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
135969 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
136001 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
136033 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
136065 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
136097 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
136129 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
136157 TTTACTAGAC
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 188 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 135437 -- 135936
TTCTTATATATACCCATTTGTCCCGTCCCGAAAACGACGTGGCCGGCCTTGAAGGACGGAGGGAT
CCGACACTATTCCTGCTAAGCTTAACTTTTTAAGTCATTAGGAGAAAGAGCTGGAACAACATATA
TTTATTTTTTCGAGGGGGGCGGGCTTTTTGTTTTTGGTAGAGCCGGCTTGGGAAGGCCGGACTCA
TCTTTGTTTGTTGGGAAGCATAATGAATCTGGAAAAGACATTCGTTGAATGGCTAAAATTGGGAC
TTATTTCCCGGATCAGATTTCCTCTATTGATTTCTCCGGAGCTAACAGGACCGAACACAGAACCA
ATTCATAAATATGGGAAAAAAGATCTAATAGAATCTTTTCAAAATTCAAGATTCAAAAACTAGAC
AAAAGGGATATACCTGGGAATCCTAAATAGATAGGAGGTATAAAGAAGATAGGGTGGATATACAT
ACTATAGAGAATAGATACGAACCATCTATTAGAAGAGTGGCCGGC
Right flanking sequence: Indices 136157 -- 136656
TTTACTAGACGGGGCATGGCCACTGCTAGATCTCTGTTGTAGTAATTAGGATCAGGGCCTGATCA
CTGTCACTGTGCCTCTTATTGAATTGATTAGGATCAAGGATCTAATCGCTATGGCTATTCACATA
TTCACATTGATTAAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCATCACCTGATG
GCTTTAATTGATTAGGATCAAGGATCTAATCACTATTGAATAGTTGCTATGGCATTTAGATCAAG
CCGGTTCGAAAGGATTTAGGGAATATCTAGATAATAGGATCGAATTCCTATTGGCTATTTAATAT
TTACTCTCTTAGAATCATGATAGTGGCCTATCTCCTTGATTGTATCATAGACTTATCGCCGCCCA
GATCTCGGCCGTGCAGGGCTCGATTCTTTCCCTGATGATACATCCATGTAAAAAATCCGGATTAG
CTCAGTCGGTAGAGCATTGGACTGTTAATCCATGGGTCGCAAGTT
Found at i:138916 original size:99 final size:99
Alignment explanation
Indices: 138793--138971 Score: 349
Period size: 99 Copynumber: 1.8 Consensus size: 99
138783 GCAACTACTT
138793 GAAAGAGATGACACTAAAAAACATATTGAAGGCTGCAGTCTATAAAGAACTCTATTTAGAATATG
1 GAAAGAGATGACACTAAAAAACATATTGAAGGCTGCAGTCTATAAAGAACTCTATTTAGAATATG
138858 TGATTAAAAAAGAGTTAATGAAAGATTGAAAAAA
66 TGATTAAAAAAGAGTTAATGAAAGATTGAAAAAA
*
138892 GAAAGAGATGGCACTAAAAAACATATTGAAGGCTGCAGTCTATAAAGAACTCTATTTAGAATATG
1 GAAAGAGATGACACTAAAAAACATATTGAAGGCTGCAGTCTATAAAGAACTCTATTTAGAATATG
138957 TGATTAAAAAAGAGT
66 TGATTAAAAAAGAGT
138972 CAACTATTGT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 79 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (99 bp):
GAAAGAGATGACACTAAAAAACATATTGAAGGCTGCAGTCTATAAAGAACTCTATTTAGAATATG
TGATTAAAAAAGAGTTAATGAAAGATTGAAAAAA
Left flanking sequence: Indices 138293 -- 138792
TCCTCTTAGCCGCCGCCCCGGCAGAGCACTCTTTTGGGGCATAGGGATCACCAAGTGTGGAACTG
GTGCTAGACAGAGATCTCTTGTACGTAAACTAGGTTTACGGTCAAACATGTTGCTCCCGGGTCGG
CACAAGACAACCCTTGAATCAATGGATCTATCCCACCCAGAAACTACGCTCAATCCCAACGCCCT
ATATCTGAAGAATCAGAGAGGGCACTTTTCTAGTGGCCGGCCCCTGCTCCAAGATCCCCTTTGGA
TGCGGATCAATCAACTTGTACTTCCTGTCGCCACCCTATATTGAAATGATCAAAAAGGATCCCTA
TATTTAGAGAATCAAAACTCTGCTCCGAACCTATTGAAAAAAAGAAAAGAGATGGCACTAAAAAA
CATATTGAAGGCTGCAGTCTATAAAGAACTCTATTTAGAATATGTGATTAAAAAAGAGTCAACTA
TTGTTGTTGAATTGATTCTTTAGAGCAACGCGGAGGCAACTACTT
Right flanking sequence: Indices 138972 -- 139471
CAACTATTGTTGTTGAAATGTTTCCGACCCTATTCCTTATTCGGTCCTCGTTCAAACGCTGTTTC
CCGATCCCTACCCGTTACAGATACGTCGAGACGTAGGCGGCACTGTTCAGTTCATTGAAGCTTCG
ACTGAGAAATAAAAGGCGGCGATCGGGTTGCCCATTATGATATAAGGGGATATATACCGAAAGAT
ACAATAGAGATCGAAGCATCTGATACGCCCGAGAGTCTTTTCCGGCTGGCACCTCAAAGATTCGG
CCCTTCCCTTCGCTACACTCAGGAAAGGGATAACCTATGTGCGTAGTCCGGAGTATGCGATGCGA
AAAACAAGGGCGGGGAGATGGAGAGATGCACCGCTGATTCTAGAGCACGTACATTCGTGAGTCGA
TGATGTCCGCAGTCGCCCCCTGCGCCGCAAGAAGCATCATATGGAGGTCTGCTTCTCGGGTAGTG
GTGATAGAAAAGGACTGCTGTGGGCAACTGGAGTGGTTGGAGAGC
Found at i:140723 original size:27 final size:29
Alignment explanation
Indices: 140692--140748 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 29
140682 CAGAAGGCAC
140692 ATCCC-TCC-GCGTAGCGAAGGGAAGGTT
1 ATCCCTTCCAGCGTAGCGAAGGGAAGGTT
140719 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 ATCCC-TTCC--AGCGTAGCGAAGGGAAGG
140749 GATGTGCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 5 0.20
29 3 0.12
32 17 0.68
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (29 bp):
ATCCCTTCCAGCGTAGCGAAGGGAAGGTT
Left flanking sequence: Indices 140192 -- 140691
ATGGCTATTCACATATTCACATCCCTTAGGATCAAGGATCTGATCACTATTCATCTAAGACAAAT
CAAGATAGAAGCAATCTATACCATAGGGCCTACAACAGAGATCTAGCACTAAGAACATCCCTGTA
TTAACAGTCATGTGGTCGATAGAGGTTAAACCTCTCCTGAGCGTAGCGAAGGGAAGGCACATCCC
ATAGTTTTACTCCGCGTAGCGAAGGGAGGGACACCGATCTCTTTTTAATCACATAGTTCTATAGT
GCCCTCTTTAATCACAGAATAGGATTTCACACTACAGTGCATAGTGTTCTCTCTCTTTTTTTAGC
TCATAATAGAGTGCCCTCTTTAATCACAGGGTTGAAGAATCTAGTTCACCCTCTTTAATCACACA
ATCTTCATAGTGACCCTTCTTTCATCACATTTTATAGAGAAACGTCACACAATAGGATTTTCCGC
TAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCAC
Right flanking sequence: Indices 140749 -- 141248
GATGTGCCTTCTGGCCGATCTCGACTTTGATCCGACTATAACAACATCGAGCTAAAAAGAGCAAG
ATCCCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATTCCCCTTATTGATCGATTCATTATTTAG
GGTCAATCTAAGATCTCGTACGGTGTTCAGCAGGTTCAATCCCTACTGTATCGAAAAGAATGCAT
TGGATGGATGCCCGGGCATTGAGGAGGAAGGACGCTTTCAAAGGCGAAAGGCCATGGGGAGATAC
CGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCCGCGCTCC
TTGGACTCTCAGGACTTAGCGAACCGAAACATCTAAGTAGCTAGAGGAAGGGGAATCAACCGAGA
CCCCGTTAGTAGCGGCGAGCGAAAGCGGATTGGGCAAATCCCAGGTTACGAGGGTTTTCATCTCG
ATCTTTGTTGGTAAAACAAAGGGCTTGGCCTTCTTTATGCAATTC
Found at i:151227 original size:17 final size:18
Alignment explanation
Indices: 151195--151228 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
151185 GCACGTATTC
*
151195 ATCAATATGGGAATCTTA
1 ATCAATATGAGAATCTTA
151213 ATCAATAT-AGAATCTT
1 ATCAATATGAGAATCTT
151229 TTCAAGATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
ATCAATATGAGAATCTTA
Left flanking sequence: Indices 150695 -- 151194
TATAAGATATGGCATATATTCTTCTTTTATGTGAATGGGTTCTGCGGGTTTCAATGCAGGGCTGG
GCAGGGTTGGCCTCTGGCTCCTTCTCGGATCTGGCTCTCGAGCTTCCACCTGTGGAAGAATGCAC
GAGGTCTCAGGAAGCGCCGGGCGGGGCATAGTGGCTACTCTTCGTGGCCATAGTGGGGGGCATCT
CTACTTCAGGGCTTGCGGACAGGATCTTATTATGAGCGAAACGAGGCGAGTGAAGCTACCCACGA
GTCTCCAATGGCTTGAACGCTATCCTATCCGGCTACTCCATCTGTTTCTGGCTATCCGTCCAAAA
TATTGCTCCTGTCTCAAGGCTTAGGAATCCAAGGCCAGCAGGGATTTCGAGTCATCTTACTCATT
GCCAGCTATTTCTTGTAGGGGCATCTCACTATCAAAATCTATTCCTTATCCAGCCCCTCCATCTG
GAAGTTACCACGCACAGGGAACCAACGAAGCAAAGGCACGTATTC
Right flanking sequence: Indices 151229 -- 151728
TTCAAGATTCAAAAACTAGTTTGTTCAAAATAACTAGACCAAGACATATACCATGCAAATGCTCT
TGAAGAAAGAGGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACT
GTTCTAAGAATGGGTTCATATATGCTCCAGGGAAAGATACGAGCGAGATACCAGATCCACACTCT
ATTAATGACAGAGGTGATCCGGGAGCCCGGCCACTGCACTCTTGCCAATAGTGGTGGGGCCCATA
GTGTATATGCATATACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATAACCCTGAAGAT
TGTATGGCTATTGTATAGCAATACAGGCCATCACAGATTGGCCGGCCCCTTCCCTTCGCTACGCT
CAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTC
AGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Found at i:151642 original size:32 final size:32
Alignment explanation
Indices: 151601--151905 Score: 610
Period size: 32 Copynumber: 9.5 Consensus size: 32
151591 TTGGCCGGCC
151601 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151633 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151665 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151697 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151729 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151761 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151793 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151825 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151857 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
151889 CCTTCCCTTCGCTACGC
1 CCTTCCCTTCGCTACGC
151906 GGAGTAAAAC
Statistics
Matches: 273, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 273 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 151101 -- 151600
AGGGGCATCTCACTATCAAAATCTATTCCTTATCCAGCCCCTCCATCTGGAAGTTACCACGCACA
GGGAACCAACGAAGCAAAGGCACGTATTCATCAATATGGGAATCTTAATCAATATAGAATCTTTT
CAAGATTCAAAAACTAGTTTGTTCAAAATAACTAGACCAAGACATATACCATGCAAATGCTCTTG
AAGAAAGAGGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTGT
TCTAAGAATGGGTTCATATATGCTCCAGGGAAAGATACGAGCGAGATACCAGATCCACACTCTAT
TAATGACAGAGGTGATCCGGGAGCCCGGCCACTGCACTCTTGCCAATAGTGGTGGGGCCCATAGT
GTATATGCATATACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATAACCCTGAAGATTG
TATGGCTATTGTATAGCAATACAGGCCATCACAGATTGGCCGGCC
Right flanking sequence: Indices 151906 -- 152405
GGAGTAAAACTAATAGTGTGGGATCTACTGGGGATCATACTATAATAGTGGAGCATGCAGTGACA
TATAAAGTGGATGGCCCTTGCTGTTATAGGGTGGATAGATATATACCATGGCTGCAACAGGCACA
CCTGATAGATGGCACTATCAGGAGCCAGGCCACTATTCTAAGATAGGGTGGATGTCTACAAGATA
GACGGGCCGGGCCACTACTGGCCATATACCAAATCCACCTGCTTAGGGCTGATAGATGGATATCT
ACTAGAAATGCTCTAATGTTCTAAGATAGGGTGAATATCGCATCTATAGATACGAGCCATATACC
AGATCCCCAATAGTGATGTTAGATCCAAGGGTGGATATAGACTCTAAATGCTATAATGTTCTAAG
ATGGGTTTATGTATGCACGATAGACTGATCGGATCCATACTATGCCTATCTGATGGCACTATCTT
AGCTAATCTAAAATAGGATTTATTATGATATTAGTAGCCATATCT
Found at i:158573 original size:27 final size:29
Alignment explanation
Indices: 158542--158598 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 29
158532 CAGAAGGCAC
158542 ATCCC-TCC-GCGTAGCGAAGGGAAGGTT
1 ATCCCTTCCAGCGTAGCGAAGGGAAGGTT
158569 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 ATCCC-TTCC--AGCGTAGCGAAGGGAAGG
158599 ACGGGATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 5 0.20
29 3 0.12
32 17 0.68
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (29 bp):
ATCCCTTCCAGCGTAGCGAAGGGAAGGTT
Left flanking sequence: Indices 158042 -- 158541
GACTTTCTATTACTCTTCTTATTCGCGAACACGCTCTCTTCCCTCGTGTTGCAAGCCCCCCTCGC
CGCCCCCGGGGGGTTCTTAACTATGTTCATATTTGCATTCCCAACTTCTCCGATGTCTACGTTGT
TTACATTTAGGTTCGCCCATTGCGCGCTATTCAAGAAAGAAAAGAAAAGGGCCGGCCCCCCCCCT
TACCTAATAAAGAATAGGGCACCACGGAACGACAACTGCTGCAATGCAACTTAGAAGCGGGGCCG
GTCCCGATTCGAGTGTATTTGACCCGGTCGTCCAGCCAACCAACCGTAGGAGGCAGAATCCACCG
CAGCTTAATCTCTTTAATTTCACATAGTAGAATTTAATCTCTTTTTAATCACATAGTTTGAATCC
AATTCAATAGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCCAC
TAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCAC
Right flanking sequence: Indices 158599 -- 159098
ACGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAG
GCACATCCCATAGTTTTACTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAG
GGAAGGACGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCCGA
TTAGAGTGCCCTCGGCCGCCGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAA
GTCGAGATCCAATTAGAGTGCCCTCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCC
CTTCGCTACGCTCAGGAAAGGGTTAACGTTCTGGGGACTCATTGAAACTTTTTCAACACGGTTCC
GGCCCAGCATCCGGTGAAGGCAACACATAATATAGAATGACGAACCAGAGAGTAGCACTATGCGG
CAGACGGAAAAAACCTACGATTAACGAGATCCACCAGATTCATAT
Found at i:158790 original size:136 final size:136
Alignment explanation
Indices: 158546--158790 Score: 490
Period size: 136 Copynumber: 1.8 Consensus size: 136
158536 AGGCACATCC
158546 CTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGC
1 CTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGC
158611 TCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACATCCCATA
66 TCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACATCCCATA
158676 GTTTTA
131 GTTTTA
158682 CTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGC
1 CTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGC
158747 TCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATC
66 TCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATC
158791 CGATTAGAGT
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 109 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (136 bp):
CTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGC
TCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACATCCCATA
GTTTTA
Left flanking sequence: Indices 158046 -- 158545
TTCTATTACTCTTCTTATTCGCGAACACGCTCTCTTCCCTCGTGTTGCAAGCCCCCCTCGCCGCC
CCCGGGGGGTTCTTAACTATGTTCATATTTGCATTCCCAACTTCTCCGATGTCTACGTTGTTTAC
ATTTAGGTTCGCCCATTGCGCGCTATTCAAGAAAGAAAAGAAAAGGGCCGGCCCCCCCCCTTACC
TAATAAAGAATAGGGCACCACGGAACGACAACTGCTGCAATGCAACTTAGAAGCGGGGCCGGTCC
CGATTCGAGTGTATTTGACCCGGTCGTCCAGCCAACCAACCGTAGGAGGCAGAATCCACCGCAGC
TTAATCTCTTTAATTTCACATAGTAGAATTTAATCTCTTTTTAATCACATAGTTTGAATCCAATT
CAATAGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCCACTAGA
GTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCACATCC
Right flanking sequence: Indices 158791 -- 159290
CGATTAGAGTGCCCTCGGCCGCCGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATC
AAAGTCGAGATCCAATTAGAGTGCCCTCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCT
TCCCTTCGCTACGCTCAGGAAAGGGTTAACGTTCTGGGGACTCATTGAAACTTTTTCAACACGGT
TCCGGCCCAGCATCCGGTGAAGGCAACACATAATATAGAATGACGAACCAGAGAGTAGCACTATG
CGGCAGACGGAAAAAACCTACGATTAACGAGATCCACCAGATTCATATTCTTAGCCGGTTCGAAA
GAATCTAGGATCTAATCACATATCTTAGTATTCCTTATAATCTAGGATATAATCAATTTATTAGC
CGGTTCGAAAGAATCTAGGTTCGAATGCGGTGTTTCTTTCCGTTTCTAATCGTAAAAACCGAGTC
GGGTCTCCTCCCAGTAACCGACAGAGTTGTTCATTCTGCATTTCC
Found at i:158863 original size:77 final size:77
Alignment explanation
Indices: 158736--158884 Score: 289
Period size: 77 Copynumber: 1.9 Consensus size: 77
158726 AAGGGAAGGA
*
158736 CGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCCGATTAGAGT
1 CGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCCAATTAGAGT
158801 GCCCTCGGCCGC
66 GCCCTCGGCCGC
158813 CGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCCAATTAGAGT
1 CGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCCAATTAGAGT
158878 GCCCTCG
66 GCCCTCG
158885 TCCTTCCCTT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.32
Consensus pattern (77 bp):
CGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCCAATTAGAGT
GCCCTCGGCCGC
Left flanking sequence: Indices 158236 -- 158735
TTACCTAATAAAGAATAGGGCACCACGGAACGACAACTGCTGCAATGCAACTTAGAAGCGGGGCC
GGTCCCGATTCGAGTGTATTTGACCCGGTCGTCCAGCCAACCAACCGTAGGAGGCAGAATCCACC
GCAGCTTAATCTCTTTAATTTCACATAGTAGAATTTAATCTCTTTTTAATCACATAGTTTGAATC
CAATTCAATAGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCCA
CTAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCACATCCCTCCGCGTAGCGAAG
GGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGCTCTTTTTAGCTCGAT
GTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACATCCCATAGTTTTACTCCGCGTA
GCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGA
Right flanking sequence: Indices 158885 -- 159384
TCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTAA
CGTTCTGGGGACTCATTGAAACTTTTTCAACACGGTTCCGGCCCAGCATCCGGTGAAGGCAACAC
ATAATATAGAATGACGAACCAGAGAGTAGCACTATGCGGCAGACGGAAAAAACCTACGATTAACG
AGATCCACCAGATTCATATTCTTAGCCGGTTCGAAAGAATCTAGGATCTAATCACATATCTTAGT
ATTCCTTATAATCTAGGATATAATCAATTTATTAGCCGGTTCGAAAGAATCTAGGTTCGAATGCG
GTGTTTCTTTCCGTTTCTAATCGTAAAAACCGAGTCGGGTCTCCTCCCAGTAACCGACAGAGTTG
TTCATTCTGCATTTCCGGGTGCCCCCCTTACTTGATCAGTAATAGGTACCATTCTTTCAGAGAAT
AATTTATGAATTGTGGCATGATTCGGTTTTAGCAACAAATCTGTG
Found at i:158927 original size:32 final size:32
Alignment explanation
Indices: 158886--158950 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
158876 GTGCCCTCGT
158886 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
158918 CCTTCCCTTCGCTACGCTCAGGAAAGGGTTAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
158950 C
1 C
158951 GTTCTGGGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 158386 -- 158885
TCACATAGTAGAATTTAATCTCTTTTTAATCACATAGTTTGAATCCAATTCAATAGTGACCCTTC
TTTCATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCCACTAGAGTGTTCTCTTTCCTT
TCTTAGCTCAATCCTGCAGAAGGCACATCCCTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTG
AGCGTAGCGAAGGGAAGGACGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAA
GTCGAGATCGGCCTGAAGGCACATCCCATAGTTTTACTCCGCGTAGCGAAGGGAAGGTTATCCCT
TTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGG
ATCAAAGTCGAGATCCGATTAGAGTGCCCTCGGCCGCCGGGATCTTGCTCTTTTTAGCTCGATGT
TGTTATAGTCGGATCAAAGTCGAGATCCAATTAGAGTGCCCTCGT
Right flanking sequence: Indices 158951 -- 159450
GTTCTGGGGACTCATTGAAACTTTTTCAACACGGTTCCGGCCCAGCATCCGGTGAAGGCAACACA
TAATATAGAATGACGAACCAGAGAGTAGCACTATGCGGCAGACGGAAAAAACCTACGATTAACGA
GATCCACCAGATTCATATTCTTAGCCGGTTCGAAAGAATCTAGGATCTAATCACATATCTTAGTA
TTCCTTATAATCTAGGATATAATCAATTTATTAGCCGGTTCGAAAGAATCTAGGTTCGAATGCGG
TGTTTCTTTCCGTTTCTAATCGTAAAAACCGAGTCGGGTCTCCTCCCAGTAACCGACAGAGTTGT
TCATTCTGCATTTCCGGGTGCCCCCCTTACTTGATCAGTAATAGGTACCATTCTTTCAGAGAATA
ATTTATGAATTGTGGCATGATTCGGTTTTAGCAACAAATCTGTGATACATTTTCGTAGTGAAAAC
GGAGTCTATTTGGAGGGTTGGTCGTGTATTTGGTGAAAGCAATAT
Found at i:166497 original size:32 final size:32
Alignment explanation
Indices: 166461--166584 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
166451 GTAGGGTAAA
166461 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
166493 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
166525 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
166557 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
166585 GCCTGATCCA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 165961 -- 166460
GTTATAGGCCAATAAAGGAATTAGATCCTAGATTCTAACATAGTTATAGGCCTGATCTAATCAAT
GCTTGGACACTACCTTAATCAATGTGAATAGCCATAGCGATTAGATCCTTGATCCTAATAAAGAA
ATCTTAAATAGCCATTAGATCCTTGATTCTAAGAAATAGGATAGTGATTAGATCCTAATTGCGAT
AGTCTCTATACTATTAGATTGCTTCTATCTTGATTTGTCTTAGATGGATCCGAACTCTTCTCTGA
TATAGATATTACCTTAATCTAATAATAAATCCTAAGATTATGGATCCGAACTCTTCTATTTGATT
GAATCGAATAAAGACTAAGAAATAGGGATCCGACACTATTCTCTTTTCTATTTATCACATATTTT
CGAACAATTCACTCAATCTAATAAAGACTCCTCCTGATTGCTCCGCCTATAGAGTAAACAAGATC
TATAGACGGAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 166585 -- 167084
GCCTGATCCAATAGTGATCTCACTGTTGCATTTATCGAGATGACACTATCTTAGTCAGGGATCCG
ATTCTATTTGATTGAATCGAATAAATGCTCCTATAAATGTTATTGGCTCGGATCTTCTCTATCGA
TTTAGAATAGGATATGGCCACTCTATGGCATTGAAATAAAATAGCAGGCCGATCTTGGATAGAAT
CCATGCTCCTACACACATCTAATCAATGCTCCTACAATCTATATTGGCTCGGATCTTCTCTATCT
TAGAATAGGATATGGCCACTATATGGCATTGAAAGGGAATAGCAGGCCGATCTTGGATCTAATCA
ATGCTCCGCAATCATCTAAGAACATAGTTATAGGCCTGGCCTGAATGCTCCGTCTATACCGTAGG
CTCAATGCCATAGCCATGCCCCGTAGGTTAACCCTCGTAGCAAAGGGTTAACCTCTTAATAAAGG
CCGAAGGCACTCTAATTGGATCTCGACTTTGATCTGGCTATAGAA
Found at i:166914 original size:128 final size:129
Alignment explanation
Indices: 166673--166916 Score: 366
Period size: 128 Copynumber: 1.9 Consensus size: 129
166663 GAATCGAATA
* *
166673 AATGCTCCTATAAATGTTATTGGCTCGGATCTTCTCTATCGATTTAGAATAGGATATGGCCACTC
1 AATGCTCCTATAAATCTTATTGGCTCGGATCTTCTCTATC-A-TTAGAATAGGATATGGCCACTA
* *
166738 TATGGCATTGAAATAAAATAGCAGGCCGATCTTGGATAGAATCCATGCTCCTACACACATCTAAT
64 TATGGCATTGAAAGAAAATAGCAGGCCGATCTTGGATAGAATCAATGCTCCTACACACATCTAAT
166803 C
129 C
*
166804 AATGCTCCTA-CAATCTATATTGGCTCGGATCTTCTCTATC-TTAGAATAGGATATGGCCACTAT
1 AATGCTCCTATAAATCT-TATTGGCTCGGATCTTCTCTATCATTAGAATAGGATATGGCCACTAT
** **
166867 ATGGCATTGAAAGGGAATAGCAGGCCGATCTTGGATCTAATCAATGCTCC
65 ATGGCATTGAAAGAAAATAGCAGGCCGATCTTGGATAGAATCAATGCTCC
166917 GCAATCATCT
Statistics
Matches: 103, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
128 66 0.64
130 4 0.04
131 33 0.32
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (129 bp):
AATGCTCCTATAAATCTTATTGGCTCGGATCTTCTCTATCATTAGAATAGGATATGGCCACTATA
TGGCATTGAAAGAAAATAGCAGGCCGATCTTGGATAGAATCAATGCTCCTACACACATCTAATC
Left flanking sequence: Indices 166173 -- 166672
ATTGCTTCTATCTTGATTTGTCTTAGATGGATCCGAACTCTTCTCTGATATAGATATTACCTTAA
TCTAATAATAAATCCTAAGATTATGGATCCGAACTCTTCTATTTGATTGAATCGAATAAAGACTA
AGAAATAGGGATCCGACACTATTCTCTTTTCTATTTATCACATATTTTCGAACAATTCACTCAAT
CTAATAAAGACTCCTCCTGATTGCTCCGCCTATAGAGTAAACAAGATCTATAGACGGAGCAGTGG
CCATGCCCCGTCTATAGTGTAGGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTT
TCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTT
CCTGAGCGTAGCGAAGGGAAGGGCCTGATCCAATAGTGATCTCACTGTTGCATTTATCGAGATGA
CACTATCTTAGTCAGGGATCCGATTCTATTTGATTGAATCGAATA
Right flanking sequence: Indices 166917 -- 167416
GCAATCATCTAAGAACATAGTTATAGGCCTGGCCTGAATGCTCCGTCTATACCGTAGGCTCAATG
CCATAGCCATGCCCCGTAGGTTAACCCTCGTAGCAAAGGGTTAACCTCTTAATAAAGGCCGAAGG
CACTCTAATTGGATCTCGACTTTGATCTGGCTATAGAACCATTGAGCTAAAAAGAGCAAGATCCC
GTCCTTCCCTTCGCTACGCTCAGGAAAGGGATGTGCCTTCTGGCCGATCTCGACTTTGATCCGAC
TATAACAACATCGAGCTAAAAAGAGCAAGATCCCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGA
TAACCTTCCCTTCGCTACGCGGAGGGATGTGCCTTCTGCAGGATTGAGCTAAGAAAGGAAAGAGA
ACACTCTAGTGGAAAATCCTATTGTGTGACGTTTTTCTATAAAATGTGATGAAAGAAGGGTCACT
ATGAAGATTGTGTGATTAAAGAGGGCACTATATAACTATGTGATT
Found at i:167229 original size:99 final size:99
Alignment explanation
Indices: 167058--167242 Score: 318
Period size: 99 Copynumber: 1.9 Consensus size: 99
167048 ACTCTAATTG
* * * *
167058 GATCTCGACTTTGATCTGGCTATAGAACCATTGAGCTAAAAAGAGCAAGATCCCGTCCTTCCCTT
1 GATCTCGACTTTGATCCGACTATAGAAACATCGAGCTAAAAAGAGCAAGATCCCGTCCTTCCCTT
167123 CGCTACGCTCAGGAAAGGGATGTGCCTTCTGGCC
66 CGCTACGCTCAGGAAAGGGATGTGCCTTCTGGCC
167157 GATCTCGACTTTGATCCGACTATA-ACAACATCGAGCTAAAAAGAGCAAGATCCCGTCCTTCCCT
1 GATCTCGACTTTGATCCGACTATAGA-AACATCGAGCTAAAAAGAGCAAGATCCCGTCCTTCCCT
167221 TCGCTACGCTCAGGAAAGGGAT
65 TCGCTACGCTCAGGAAAGGGAT
167243 AACCTTCCCT
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
98 1 0.01
99 80 0.99
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (99 bp):
GATCTCGACTTTGATCCGACTATAGAAACATCGAGCTAAAAAGAGCAAGATCCCGTCCTTCCCTT
CGCTACGCTCAGGAAAGGGATGTGCCTTCTGGCC
Left flanking sequence: Indices 166558 -- 167057
CCTTTCCTGAGCGTAGCGAAGGGAAGGGCCTGATCCAATAGTGATCTCACTGTTGCATTTATCGA
GATGACACTATCTTAGTCAGGGATCCGATTCTATTTGATTGAATCGAATAAATGCTCCTATAAAT
GTTATTGGCTCGGATCTTCTCTATCGATTTAGAATAGGATATGGCCACTCTATGGCATTGAAATA
AAATAGCAGGCCGATCTTGGATAGAATCCATGCTCCTACACACATCTAATCAATGCTCCTACAAT
CTATATTGGCTCGGATCTTCTCTATCTTAGAATAGGATATGGCCACTATATGGCATTGAAAGGGA
ATAGCAGGCCGATCTTGGATCTAATCAATGCTCCGCAATCATCTAAGAACATAGTTATAGGCCTG
GCCTGAATGCTCCGTCTATACCGTAGGCTCAATGCCATAGCCATGCCCCGTAGGTTAACCCTCGT
AGCAAAGGGTTAACCTCTTAATAAAGGCCGAAGGCACTCTAATTG
Right flanking sequence: Indices 167243 -- 167742
AACCTTCCCTTCGCTACGCGGAGGGATGTGCCTTCTGCAGGATTGAGCTAAGAAAGGAAAGAGAA
CACTCTAGTGGAAAATCCTATTGTGTGACGTTTTTCTATAAAATGTGATGAAAGAAGGGTCACTA
TGAAGATTGTGTGATTAAAGAGGGCACTATATAACTATGTGATTAAAAAGAGATCTCTATGGTGT
CCCTCCCTTCGCTACGCGGAGTAAAACTATGGGATGTGCCTTCCCTTCGCTACGCTCAGGAAAGG
TTTAACCTCTATATTCTCACATGACTGTTAGTCAGGGATCCGAGCTATTCTATGCTATAGCATTT
CACCTATTTTCTAATTATTCGTTCTAATTTTTCGATTTGTAGTCTTTGAATCTTGAAAAGATTCT
ATTCTCTAGCTTTTATCCTATTTCTGAAGATTCCCATATTGATGAATAGGGTCGTTCGGCGCTGT
TGGCCTACTAAGCACTTGCCCGCTGCGATATCCTGCCGCTTGGCG
Found at i:167971 original size:32 final size:32
Alignment explanation
Indices: 167935--168028 Score: 188
Period size: 32 Copynumber: 2.9 Consensus size: 32
167925 CTTCAGGGGA
167935 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
167967 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
167999 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
168029 GGCGGGTGTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.23
Consensus pattern (32 bp):
ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
Left flanking sequence: Indices 167435 -- 167934
TGTCCCTCCCTTCGCTACGCGGAGTAAAACTATGGGATGTGCCTTCCCTTCGCTACGCTCAGGAA
AGGTTTAACCTCTATATTCTCACATGACTGTTAGTCAGGGATCCGAGCTATTCTATGCTATAGCA
TTTCACCTATTTTCTAATTATTCGTTCTAATTTTTCGATTTGTAGTCTTTGAATCTTGAAAAGAT
TCTATTCTCTAGCTTTTATCCTATTTCTGAAGATTCCCATATTGATGAATAGGGTCGTTCGGCGC
TGTTGGCCTACTAAGCACTTGCCCGCTGCGATATCCTGCCGCTTGGCGGGCTCCGCGCTCGTTAT
CCTGACTGTTTCCTCTGCTTCACTGGGGCCCATCCCCCGCCGCCCTCCCATTGCTCTAGCCATGA
TATCGCTATGACAGCTCCAGCTCGCACCCAGCAGGCAGGTTGGCCCTGCTGGTGCGGCTGAGCCA
GAGTGAGCTCAGCAGTCAGCCCCTATTCATTACTTCTTCAGGGGA
Right flanking sequence: Indices 168029 -- 168528
GGCGGGTGTTTCGCTTTTGCCAGATCCAGAGAGATACTACGAGTCCTCCGTCCCAGATTCCCTCG
CCGCGGCCATCTGGTTCACCGGTACTACCAATAACTCTCATGCTTACGTTACTTATGTAAGATCT
CGGACCTAAAAGATTCACAAAGATTATAAAAAAGATCTAATAAGATCTAAGTGATCCTATTAAGA
TCTTTATGTATCTAAGTGCCGGTCCGAGCGAAGACCCCAGTCGTGCTCCCGGCATCGCTTTTCAT
TTTCATCATCATATTGAAGTTGGAAACTCCTCGTGCTCCGCCATAAGGACTTGGAGTCCATATCA
TGGTGAAGAGAACGCTGCGGTACTCTTTCTTGTTATTGCTCAAAAAACTGACCGAACGCGGTTAT
TGGCTCGTCCGACCCGGCAGCATTCATGAGTCACTCGTTCAACTGTCCTTCGGAGACACGGTCGA
AAAGTGCCATGGTCGCCCCCCGTCCTTTCCCTTATCTCGGTCCCA
Found at i:171819 original size:32 final size:32
Alignment explanation
Indices: 171783--172546 Score: 1528
Period size: 32 Copynumber: 23.9 Consensus size: 32
171773 GTAGGGTAAA
171783 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
171815 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
171847 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
171879 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
171911 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
171943 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
171975 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172007 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172039 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172071 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172103 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172135 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172167 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172199 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172231 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172263 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172295 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172327 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172359 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172391 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172423 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172455 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172487 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
172519 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
172547 GCCTGATCCA
Statistics
Matches: 732, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 732 1.00
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 171283 -- 171782
TATCGATCATACCATATCACGCCATAGACTTGTATATGGAGACAGATAGATGGATATACATATCC
ATCTATTGATAGGTATATATATATATATCCGGAGGGATCCATATGTATATCTACATTAACGCACC
TATATCTATGCATGGTCCTATAGAGATATATACACCTATAGGCATGCAGGCATGTGTGCACATAT
AGGTGCCTATATCTATGCGGGCATAGATTTACACATATGTATACACACACATACATATAGATATG
GGCACATCTAGATACATATATATATACAGGTGTAGGCATCTATCTATAGGGGTATGGATCTATGT
GTATATATATATACACATGGGCATAGATGTGCCTATATATATACACCTATATATCCTGCCCAGGC
TTATATGTATCCATATATAGGGATACATGGCATTTAACTAAATATATGTCTATGTCCATAAGATC
CTAGTTAAATGCCATAGCCATGCTCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 172547 -- 173046
GCCTGATCCAAAAAAAAGAGTTTCAGCTAAATTCAAAAACATTGAAAGCTATTGAAGAAGAGAGA
ACACTATGCACTATAAAAAAAGAAACATTAAGCTAATAAAAGCAAGATCACACTGTAGTGTGAAA
TCCTATTCTGTGATTAAAAAAGGATTAAAACTGTGTGATTAAAGAGGGCACTATAATAACTTCAA
GCTAAAAAAAAAAAAAGAACGCTATTTCTACTGTGTGATTAAAAAGGGATCTCTATGGTGTCCCT
CCCTTCGCTACGCGGAGTAAAACTATGGGATGTGCCTTCCCTTCGCTACGCTCAGGAAAGGTTTA
ACCTCTATATTATCAAATCTTTTGGCACAGGGACATATGTCCCTATATAGATGGATACATCGTGG
ATATATAGTGTGTATATATATACATACATCCCATTTATTAACGAAGTGATAGACCTTAGTATGTA
TCGCTCGTCGATCAAAATGATTCATTCCCCTGGTCCCTCTTCGCG
Found at i:176003 original size:19 final size:19
Alignment explanation
Indices: 175979--176019 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
175969 CCTATTATAT
**
175979 AATAGAATAACTGCGATAG
1 AATAGAATAAAGGCGATAG
175998 AATAGAATAAAGGCGATAG
1 AATAGAATAAAGGCGATAG
176017 AAT
1 AAT
176020 CTATCTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.07, G:0.22, T:0.20
Consensus pattern (19 bp):
AATAGAATAAAGGCGATAG
Left flanking sequence: Indices 175479 -- 175978
TACGTGATGCTTCCGCATCATACGGCTCCGTCCCGAGATAGATAGCTTATAAGTCGTTCGTCGTC
GGCCCTTGTAATTCTCCCACTATCTATGCATGTACCTTCCGCCTTCACTTTCGAATTTTTTGCTT
CTCGTACGATATCTTATCGGTGGTGTTCAGCGCCGCAGAGCCCCAAGACCACTCCGCGGAGCGAA
CAATGCCGGCCGGGAGATGCCTGTAGGGCTCGCCCCGCGCCGCTTCCCGATATTCTATTCTAATT
GCGATATAGCTCTTAATCTAATATTTAGAATAGAATATCTATTCTATAATATTAAGAGCTTTATA
TCATATACTATATCCGAATCTTATATTCTATTATAGTATATAGAAATGTCATAAGAATCTAATCG
ATTAGAATATAATATTATATACTCTAATCTAATATGAGATAGAATAATAGAATAGAATAGAATAA
AGTTCTAATAATCTAAATGTCATAGAATCTAATATCCTATTATAT
Right flanking sequence: Indices 176020 -- 176519
CTATCTTCTAATTCTATTCTATTTAGATTCTATTATATCCCCGAAGAACTAGCTAGTAGTGTATT
ACTAGCTCTTGCGCTGGGGCGGCGGCCAACCATGCCTTTCGAACGCACGGTAACTCTCGGCGGAG
GTGGCAGGCAGTCCCACCTACCTCATCGTACGTACTCTCGGAATCTTGTTGGGAATAAGGATTAA
GCCACCCGCGGCCTGGAGAGCACATGTAACACACAGTCGGGTTGCTCTGAACACGCAGCAGAGAG
AGATGTCTATAGATACTATGTGTTCAAGTCCTTGCCTTATGGCCCCCGACCTACGGCCTTTACGC
TACTATTACTGTGAGCGGTTCCAATTATCCATTCTTTGACAGAGATTGGCTTTGGCCCGTCCGGT
CCCACCGCCCGGCGGGGCCGGCTTGAACTTGTACGCAGCACTTGTACGGAGGTGCAGGCCGGGGA
CCCATTGTGTCCCTGTTCTTAAGGACCCTCTTCAATAGTGACCCC
Found at i:179646 original size:24 final size:24
Alignment explanation
Indices: 179614--179663 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
179604 GAGTGTTCTC
*
179614 TCGGATGGACGGGGTCTTGAGAGT
1 TCGGATGGACGGAGTCTTGAGAGT
179638 TCGGATGGACGGAGTCTTGAGAGT
1 TCGGATGGACGGAGTCTTGAGAGT
179662 TC
1 TC
179664 CCTCCTCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.18, C:0.14, G:0.42, T:0.26
Consensus pattern (24 bp):
TCGGATGGACGGAGTCTTGAGAGT
Left flanking sequence: Indices 179114 -- 179613
TGGAAGAATACCTGGCCTTGGCCGTACGAGCCAGAATCGCAGCCTCGCACTTCATGCGAGGAACT
GATCCCGGGGAATGGATCGTAGATGGATTTTACCCATTTCCACTTTTTCGGTCGTTCGGGGACAA
ACATGAATAAATAGGCTCAATTAGATTCTATTCTATCTATTTTACCATATTTGTGAATAGGTGCC
GACTGAAGGCACATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGTGGGTTTTCGTAGAATATAGTG
GGGTACTCTTTCGTTCGTAAAGGTGGGTGCCTTCAGCTTCATTCACTTCTTATTTACGATGCCCC
ATACATAGAAACCCCTTGCTCTTGCTCGGAAATAGTGGAGACTCTCTGGATGTGGTCGCTGGTGA
CTACTTCAGGTAGGTGGCCGGTTACTTCTTCTGGCCGCTCACCCTTCGAGGAGTAGTAGCTCGTG
AGGAACTAAACGAATAGCTTTGGGTCTTGTCTCGAGAGTGTTCTC
Right flanking sequence: Indices 179664 -- 180163
CCTCCTCATTCATGTCCTCACCAAGAAGAAAAACTTCGTTCACCGCCCTTCGCCACCCACCCGCT
ACCCTTTCCGACCTTTTCAGTTAGGTGCCGCCCTGACTCCCACTTCATTCTAACTCTTAGAGGTA
AATCCAATATCTAATAACATAGTTATAGGCCTGGCCTGAATGCTCCGTCTATACCGTAGGCTCAA
TGCCATAGCCATGCCCCGTAGGTTAACCCTCGTAGCAAAGGGAAGGTTATCCCTTTCCTGAGTGT
AGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTA
GCGAAGGGAAGGGGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTTATCCCTTT
CCTGAGCGTAGCGAAGGGAAGGCACGTGGTGATCCCCCTGTTCCATAGGTCACACGGTATAGGAC
AACCCTTAGCCAATGGATCCGGCACTTGCACTCGGAGGGAGGCCG
Found at i:180007 original size:32 final size:32
Alignment explanation
Indices: 179889--180000 Score: 206
Period size: 32 Copynumber: 3.5 Consensus size: 32
179879 GGTTAACCCT
*
179889 CGTAGCAAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
179921 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
179953 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
179985 CGTAGCGAAGGGAAGG
1 CGTAGCGAAGGGAAGG
180001 GGATCCCACA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 77 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.23
Consensus pattern (32 bp):
CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
Left flanking sequence: Indices 179389 -- 179888
CGTAAAGGTGGGTGCCTTCAGCTTCATTCACTTCTTATTTACGATGCCCCATACATAGAAACCCC
TTGCTCTTGCTCGGAAATAGTGGAGACTCTCTGGATGTGGTCGCTGGTGACTACTTCAGGTAGGT
GGCCGGTTACTTCTTCTGGCCGCTCACCCTTCGAGGAGTAGTAGCTCGTGAGGAACTAAACGAAT
AGCTTTGGGTCTTGTCTCGAGAGTGTTCTCTCGGATGGACGGGGTCTTGAGAGTTCGGATGGACG
GAGTCTTGAGAGTTCCCTCCTCATTCATGTCCTCACCAAGAAGAAAAACTTCGTTCACCGCCCTT
CGCCACCCACCCGCTACCCTTTCCGACCTTTTCAGTTAGGTGCCGCCCTGACTCCCACTTCATTC
TAACTCTTAGAGGTAAATCCAATATCTAATAACATAGTTATAGGCCTGGCCTGAATGCTCCGTCT
ATACCGTAGGCTCAATGCCATAGCCATGCCCCGTAGGTTAACCCT
Right flanking sequence: Indices 180001 -- 180500
GGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGC
GAAGGGAAGGCACGTGGTGATCCCCCTGTTCCATAGGTCACACGGTATAGGACAACCCTTAGCCA
ATGGATCCGGCACTTGCACTCGGAGGGAGGCCGGGCCTAATCTCTTTTTAATCACATAGTTTGAA
TCCAATATAGTTCACCCTCTTTTAATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCCA
CTAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCATCCCATAGTTTTACTCCGCGTAGCGAA
GGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGATGTGCCTTCTGGCCGATCTCGACT
TTGATCCGACTATAACAACATCGAGCTAAAAAAAGAAAGAGAACACTATGAAGAAAAGAAGATTG
AGCCACTACAAGAGAGGAAAGAGAACACTCTAGTGGAAAATCCTA
Found at i:188731 original size:31 final size:30
Alignment explanation
Indices: 188696--188755 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
188686 TCCCCAATTC
*
188696 TTGTTCACCCCGGATGATCGTGTTGGGTGAA
1 TTGTT-ACCCCGGACGATCGTGTTGGGTGAA
* *
188727 TTGTTACCTCGTACGATCGTGTTGGGTGA
1 TTGTTACCCCGGACGATCGTGTTGGGTGA
188756 GCAACAGCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.15, C:0.18, G:0.32, T:0.35
Consensus pattern (30 bp):
TTGTTACCCCGGACGATCGTGTTGGGTGAA
Left flanking sequence: Indices 188196 -- 188695
CCAAGTGGGCCCTCTTGGCCACCCACGACCCTGGCTTTTTGGAGAATCCTGCTCCTGTGTCGTAG
GACTTGTAGCTCGGCGGTGGGTTTTTCTCCTTCCAGTTTCGAGTGTATTCTTGGATAGTTATAGC
GGCCCATAGGCGCAAGATGTACCTTGTGGGGGGGTCCCCTGGACATAGTCCTTCCAGACAGTGGC
CGTTCAGTCCATGGTCCATTGGATGGATGTTCGGTGCAAGGCCAAAAATTGGAACACACTGCCCA
AAACGTTCGTTCCCGTCCTTCGCTTTAGGGCCTGTCCCTCAGTGTGGTCAGTACTTAATACTGTC
GGGCAGCAAAGCTTACACTTGTTCACTTATTATGATGGTTCACCAGGGCCTCTTTCCTCCTCCCT
TTTCTGCTCACTCGTAAATCAGGGGCGGGCTGACCCCTGCAAAGGGGGAGAGAGTCGACTGAACA
TCTCAGCCATTGGCGGGAATTTCGCCCGCATCCAATCCCCAATTC
Right flanking sequence: Indices 188756 -- 189255
GCAACAGCCGCTTCGTCACAGTACTTACTCATGGGCTAACAGGTCACACTTTGGCCAAGTATCCT
ACAAAAAGACTCCCGGGAGCCAAAAAGATTGAAGGAATGGCCATAGGAATGGGCGCATCATGACA
TCGTAAGATGTCTCGCCCGAATGGATTAGTTGGTGCCGGAAATGTTGGAAAAAGTGAACGAAAAG
AGTGATAAGGAGTGGAAAAGACAGAGACACTTCCCAACCAGGAAGCAAAGTTACCACTGATGGTA
TATTGAGTGTGAGCGGGCTCTGAGATCACATCTTTGGAATAAAATCCAGTTGGAAAAGGAAATCC
AATTGGAGATAAGCTGCCTATGAGCATCATAGCATAGGTAAAAGGTAACGAGGAAGCAAGCCCCC
CCATCTTACGCATATCTTGCTCATCCGACATGGCATGAATCACTGGACCTGCACTCGAGAATAGT
AATGCTTTGGGAAAAGCGTGATTCATTAAATGAGAGGCGCTAACC
Found at i:191292 original size:12 final size:12
Alignment explanation
Indices: 191275--191320 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
191265 TTGGCCCGGC
*
191275 GCCAAGAATAAA
1 GCCAAGAAGAAA
*
191287 GCCAAGAAGAGA
1 GCCAAGAAGAAA
*
191299 GCCAAAAAGAAA
1 GCCAAGAAGAAA
*
191311 GCCAAAAAGA
1 GCCAAGAAGA
191321 GAGTAAGTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.59, C:0.17, G:0.22, T:0.02
Consensus pattern (12 bp):
GCCAAGAAGAAA
Left flanking sequence: Indices 190775 -- 191274
CCAGTACGTCCCCCCCTTATTCCCGACATGCTATGGTGCCCCAGGGTGGGTAGTTCCCATAGAGC
GAGTCGAGTCCGTATCGCCGCGGAGCAACTGCAGCGTCCGGATCGAATCTATCTACTCGGCAATT
CATCCGGTGACTTCACGGTCGCCAAAGGAGCCCCGAGAAGCATCAAACATTTCAGGGAAAATCCA
TGGAGCAATCTTTGGATAGCAAGCACTAGCTCCCGGTGCGACTTCATAAGAAGCAATCAAAGATG
AGATAGAAGATAATGAAACGCACGTGGTGGTTACTATAGCGGTTCCTTCTGAACCTGGAAAACGT
CCGAAAGCACCTGCTACGGAACTACCGAGCAAGGGCAACGATACTATTAGTAGATGCATGAAATA
GAATATGAGGACAACCAAGAATCAGACAATTACGGAGCGGCCTGTGATTGAGCGGAAATATGAAA
TCCCTAACGAGCCAACAAAAAGCCGTTGTTTCGGCTTGGCCCGGC
Right flanking sequence: Indices 191321 -- 191820
GAGTAAGTGGTGCCCGGCGGCAAGGCGCAGCCAACAACAAAGCAGTTAAGGTCCCCGTTGTCTAT
GATCGGGTGCAGGAGAAAAGGAACTCAACATAGAGCCGGATTGGAAGGCAACAACCTCTGAAGAG
GAAGCACTCCTTTTTAGGTGATAACCTCCTAATCGCCTGTATCCGAGGTTAACCCTTTCCTGAGC
GTAGCGAAGGGAAGGCGGGCACTTCCAAAAAGCTGGCGAATAGCTAGCTGGCAGCTTGCAGCGGC
AGAACTTTAAGTGCCGGCCGAATCCCAGCGTGTTGCTTTCGCCAGAGCGACCCGACGTATAGTTT
GATAGCTCGATCTCCGTAGCTGAGAGCGGTGTTGCTTTTTCAGCAACCGCATCGTTGTGTTCATA
GGAGAGGTTTGATAGCTCGATCTCCGGCTCAATAGCCTTCGCCGGCCGCTGGCCCGCCTTTTCCC
GCCGGCCCGGAAGCGGCGAGAGGCCTCCTCGAAACTCCTCCCTTC
Found at i:191311 original size:24 final size:24
Alignment explanation
Indices: 191275--191323 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
191265 TTGGCCCGGC
* * *
191275 GCCAAGAATAAAGCCAAGAAGAGA
1 GCCAAAAAGAAAGCCAAAAAGAGA
191299 GCCAAAAAGAAAGCCAAAAAGAGA
1 GCCAAAAAGAAAGCCAAAAAGAGA
191323 G
1 G
191324 TAAGTGGTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.16, G:0.24, T:0.02
Consensus pattern (24 bp):
GCCAAAAAGAAAGCCAAAAAGAGA
Left flanking sequence: Indices 190775 -- 191274
CCAGTACGTCCCCCCCTTATTCCCGACATGCTATGGTGCCCCAGGGTGGGTAGTTCCCATAGAGC
GAGTCGAGTCCGTATCGCCGCGGAGCAACTGCAGCGTCCGGATCGAATCTATCTACTCGGCAATT
CATCCGGTGACTTCACGGTCGCCAAAGGAGCCCCGAGAAGCATCAAACATTTCAGGGAAAATCCA
TGGAGCAATCTTTGGATAGCAAGCACTAGCTCCCGGTGCGACTTCATAAGAAGCAATCAAAGATG
AGATAGAAGATAATGAAACGCACGTGGTGGTTACTATAGCGGTTCCTTCTGAACCTGGAAAACGT
CCGAAAGCACCTGCTACGGAACTACCGAGCAAGGGCAACGATACTATTAGTAGATGCATGAAATA
GAATATGAGGACAACCAAGAATCAGACAATTACGGAGCGGCCTGTGATTGAGCGGAAATATGAAA
TCCCTAACGAGCCAACAAAAAGCCGTTGTTTCGGCTTGGCCCGGC
Right flanking sequence: Indices 191324 -- 191823
TAAGTGGTGCCCGGCGGCAAGGCGCAGCCAACAACAAAGCAGTTAAGGTCCCCGTTGTCTATGAT
CGGGTGCAGGAGAAAAGGAACTCAACATAGAGCCGGATTGGAAGGCAACAACCTCTGAAGAGGAA
GCACTCCTTTTTAGGTGATAACCTCCTAATCGCCTGTATCCGAGGTTAACCCTTTCCTGAGCGTA
GCGAAGGGAAGGCGGGCACTTCCAAAAAGCTGGCGAATAGCTAGCTGGCAGCTTGCAGCGGCAGA
ACTTTAAGTGCCGGCCGAATCCCAGCGTGTTGCTTTCGCCAGAGCGACCCGACGTATAGTTTGAT
AGCTCGATCTCCGTAGCTGAGAGCGGTGTTGCTTTTTCAGCAACCGCATCGTTGTGTTCATAGGA
GAGGTTTGATAGCTCGATCTCCGGCTCAATAGCCTTCGCCGGCCGCTGGCCCGCCTTTTCCCGCC
GGCCCGGAAGCGGCGAGAGGCCTCCTCGAAACTCCTCCCTTCGAG
Found at i:192196 original size:108 final size:105
Alignment explanation
Indices: 192007--192236 Score: 424
Period size: 108 Copynumber: 2.2 Consensus size: 105
191997 TAGAAGGATC
192007 TCTTCTTTATTCATCTAGGTGCTTTGTTGACACTACTGTGAAGCAGACTTTGGGTTGGAACAAGC
1 TCTTCTTTATTCATCTAGGTGCTTTGTTGACACTACTGTGAAGCAGACTTTGGGTTGGAACAAGC
192072 CAAGTAGCCGCCTTATTCCTTGAACCCCCCCCCCGCCTTTATT
66 CAAGTAGCCGCCTTATTCCTTGAA---CCCCCCCGCCTTTATT
192115 TCTTCTTTATTCATCTAGGTGCTTTGTTGACACTACTGTGAAGCAGACTTTGGGTTGGAACAAGC
1 TCTTCTTTATTCATCTAGGTGCTTTGTTGACACTACTGTGAAGCAGACTTTGGGTTGGAACAAGC
*
192180 CAAGTAGCCGCCTTATTCCTTGAACCCCCCCGCCTTTCTT
66 CAAGTAGCCGCCTTATTCCTTGAACCCCCCCGCCTTTATT
192220 TCTTCTTTATTCATCTA
1 TCTTCTTTATTCATCTA
192237 TTTGGGGCGG
Statistics
Matches: 121, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
105 32 0.26
108 89 0.74
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (105 bp):
TCTTCTTTATTCATCTAGGTGCTTTGTTGACACTACTGTGAAGCAGACTTTGGGTTGGAACAAGC
CAAGTAGCCGCCTTATTCCTTGAACCCCCCCGCCTTTATT
Left flanking sequence: Indices 191507 -- 192006
TTCCTGAGCGTAGCGAAGGGAAGGCGGGCACTTCCAAAAAGCTGGCGAATAGCTAGCTGGCAGCT
TGCAGCGGCAGAACTTTAAGTGCCGGCCGAATCCCAGCGTGTTGCTTTCGCCAGAGCGACCCGAC
GTATAGTTTGATAGCTCGATCTCCGTAGCTGAGAGCGGTGTTGCTTTTTCAGCAACCGCATCGTT
GTGTTCATAGGAGAGGTTTGATAGCTCGATCTCCGGCTCAATAGCCTTCGCCGGCCGCTGGCCCG
CCTTTTCCCGCCGGCCCGGAAGCGGCGAGAGGCCTCCTCGAAACTCCTCCCTTCGAGAAGGAAGT
AAACCCAGGCCTTTGTCTCCTCCTTGCCGTTCATTTCTTTATTGATTTGATAGGGATCATGGATT
TAACTCACGATCCCTATGAAATCTCGAAGGGTTGCTTTCGCAATTCTCCCGACGGCATGGCGTGT
ATAGCAGCTATACCCCTCACTTCGTTGATAATATATAGAAGGATC
Right flanking sequence: Indices 192237 -- 192736
TTTGGGGCGGCTGGCGGTTTTGCCCACCCACCTCCAGCACTTGAACCGGATTTGGGCTGTGTGGC
CAAAACAAGTCTCCTTTTCTTATTGTATGAAGGATCTTACGAAGCTCATTTCGATAAATGTAACA
GTGGGCCGGGCGGGGCAAAAGGCGGCTCAAAACTTGTGCTTGGTGGCAATGCAGTGAGTTATCTA
CAATGCCGACAGAACGAATGGGAAAGACCCGACTAGCTCTTATTCAAAATGGGGGGGAAACCCGG
ACCAGCTCAACCTTAACGCGTAACAGTTACGCGTTGAGAGAGCAAATCAGGAGCCTGATTCAATC
AACGGAAGGAGGACGGAAATGGGATTCGAACCCACACCCTTCTTTACCACTTCATTAATGGGGGG
GGGGGCGGGCGGCTACCTTTTACTCAATTCCGTCACTGGGGGGGCGAACCCAAGCACCTCACTGG
AGGGCGAGAAGCCCCAAACACAGATGTTGCACTATGTTCATGTTA
Found at i:192988 original size:21 final size:21
Alignment explanation
Indices: 192962--193007 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
192952 CTCTGACTAG
*
192962 CAGGAACTCGGAGCTCA-AACT
1 CAGGAACTC-GAACTCATAACT
192983 CAGGAACTCGAACTCATAACT
1 CAGGAACTCGAACTCATAACT
193004 CAGG
1 CAGG
193008 TTTCCGGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (21 bp):
CAGGAACTCGAACTCATAACT
Left flanking sequence: Indices 192462 -- 192961
GACTAGCTCTTATTCAAAATGGGGGGGAAACCCGGACCAGCTCAACCTTAACGCGTAACAGTTAC
GCGTTGAGAGAGCAAATCAGGAGCCTGATTCAATCAACGGAAGGAGGACGGAAATGGGATTCGAA
CCCACACCCTTCTTTACCACTTCATTAATGGGGGGGGGGGCGGGCGGCTACCTTTTACTCAATTC
CGTCACTGGGGGGGCGAACCCAAGCACCTCACTGGAGGGCGAGAAGCCCCAAACACAGATGTTGC
ACTATGTTCATGTTATTCCCTTTCCGATCCCGGAACGGCGAGGAACTCGAACGAAGGAACAGATT
CTATACGTGATAAAGAGTGTTTCCCGTGGTGCATAGCAGAAGGAGCAGATTCTATACGTGATAAA
GAGTGTTTCCCGTGGTGCTACGGGGCCCGGGCGGAGCAGACGAAGAAAACACCGATCCCTCATCA
GATTCTCTAGACAGCAGCCCAGCCCGAGGACTTGCCTCTGACTAG
Right flanking sequence: Indices 193008 -- 193507
TTTCCGGACTGGCAGCCAAAGCTACGAGCCCACCGCCCCCTATCCCTCTCCTTCGAAAGGGAAAA
GGCTGCATAGTGCTGCACTCTTACTTTGCATGGCGTTTTCATTCCCCGCTTTCTTCGCGTTTCCA
GCCTTTACCCCTTTCTCTATTTGTAAGGGGTCAACAAAGACCCGTCAAGCAGGGAAGGACCGACC
AAAAGGGCAACCGAAGGGGTCAGGAAGAGACAGACCCGGCCCCAGCCAAGAGGCTCTTTCTTCGA
GAGTGCCCCAGTAATCTAAATTGGATCTCTCAATAGTAATCAATCCCACACTGATTGATTTAGGG
GTTCCCTTCGTAGTATGAATCAATCAGGCTCTGGACCGTAAAATATCCTCTCCCCTAAGCAGTTA
CCCGGGTTTGGTTTCTTATCCCTCAGTCCCGGGGTCAAGAGCGGAGCTTCCAGTTATTAAAATTC
CCGGATCGGGGAGCATCGATCGTATATAATAGTATCGCTCGGAGG
Found at i:201050 original size:38 final size:39
Alignment explanation
Indices: 200995--201068 Score: 132
Period size: 38 Copynumber: 1.9 Consensus size: 39
200985 AGTTCTTTAT
*
200995 TCGTTTTAAGATCTCATTAATATTCTATTCTTTTTTTCC
1 TCGTTTCAAGATCTCATTAATATTCTATTCTTTTTTTCC
201034 TCGTTTCAAGAT-TCATTAATATTCTATTCTTTTTT
1 TCGTTTCAAGATCTCATTAATATTCTATTCTTTTTT
201069 CATGAAAGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
38 23 0.68
39 11 0.32
ACGTcount: A:0.22, C:0.16, G:0.05, T:0.57
Consensus pattern (39 bp):
TCGTTTCAAGATCTCATTAATATTCTATTCTTTTTTTCC
Left flanking sequence: Indices 200495 -- 200994
GGATCAACGGCAAGAATCAACTCCTTCTTCATCGAACGACAGGGATAAATGGAATTGAACTCAAT
TCTCCACTGAGTGGGAATACAATTAAGCAACGCTGGGCGAGAGGGATCAGGATCAGGCACTCCAA
ACTAACTATTCATTCGAACTCACTGGCATTTCGATTCCGACCACGCTGGCAGGCTTCCTTGGCTA
GAATGTTCCTGGGCATGAAATCCGTACTTTCACCCTTGCCGTTGTCCCTATTTGATCTGCCCACG
ATATCAAATGGCCCCGCCCGTTCAACTAGGCTGCAGCCGATGCAGCGGGATTATCACCATTACGA
ATCACTAAAAAAGGGAATCACACGTTGAGCAGTGCGAAGTGCCAACGAAGCGCTTTGCTTTACAA
ATCTTTTCCGGTGGCCCCGGGTTTCCCCCCAGCTAGGCCCTATTGCTATTGGAGAGTCAAATGCT
CCAATTCAAATGAGAGTTACCTTTATATATTAATTAGTTCTTTAT
Right flanking sequence: Indices 201069 -- 201568
CATGAAAGAGAAGCCAATAGAGGTGCGAAGAATTGATTTCAGTGCCGGAGAAACAGAAGTGGTTC
CCTTATTTCTTTCTCTACTGCTCGCATGAGTGAATCGTATAGAATACAGTTATTGTCAACTGTTG
CTTTATAAATAGAAAGAACCTACTATGGGAGCTGGTCATGTCCGAAGTTGTTACTTTAATCGCAA
GGTTATCCCATAGTTTTACTCCGCATCAATAGGTTGAGTAGTAATAACAGGAATAATGAGAAGAA
CAATGGAAGCGGGGTAGAGTAATTGGTTGACTCGTCAGGCCCATGACCTGAAGACTGCAGGTTCG
AACCCTGCCCCCGCCTCCGGCCGAAAACGAGATCTAGCACAGGGAAGGGCTCTTATAAATGTCAT
AGATTGAACACTTATCAGCAATGTTTAGGATTGGCTCACTATAGCTCCGCACTAGTGTCATCCAC
GGATTCATACTACTGGGAACGAACAAGGTTATCCCTTTCCTGAGC
Found at i:201589 original size:32 final size:32
Alignment explanation
Indices: 201548--201647 Score: 200
Period size: 32 Copynumber: 3.1 Consensus size: 32
201538 GGGAACGAAC
201548 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
201580 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
201612 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
201644 AAGG
1 AAGG
201648 AAGCACTTGG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (32 bp):
AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
Left flanking sequence: Indices 201048 -- 201547
ATTAATATTCTATTCTTTTTTCATGAAAGAGAAGCCAATAGAGGTGCGAAGAATTGATTTCAGTG
CCGGAGAAACAGAAGTGGTTCCCTTATTTCTTTCTCTACTGCTCGCATGAGTGAATCGTATAGAA
TACAGTTATTGTCAACTGTTGCTTTATAAATAGAAAGAACCTACTATGGGAGCTGGTCATGTCCG
AAGTTGTTACTTTAATCGCAAGGTTATCCCATAGTTTTACTCCGCATCAATAGGTTGAGTAGTAA
TAACAGGAATAATGAGAAGAACAATGGAAGCGGGGTAGAGTAATTGGTTGACTCGTCAGGCCCAT
GACCTGAAGACTGCAGGTTCGAACCCTGCCCCCGCCTCCGGCCGAAAACGAGATCTAGCACAGGG
AAGGGCTCTTATAAATGTCATAGATTGAACACTTATCAGCAATGTTTAGGATTGGCTCACTATAG
CTCCGCACTAGTGTCATCCACGGATTCATACTACTGGGAACGAAC
Right flanking sequence: Indices 201648 -- 202147
AAGCACTTGGGATTTAATAAGAAAGTGATAGTGATTCATCCTTTTCTTTGTAAATAGGAAGCTTT
TATTAGAAAGAAGAATAAGAAAGAAAGAAGAAATTCTTTCTTATTCTTCTATTTCTTATGCATAG
TGCACTAATTCGATCTAAGATTTAGATTGTTCTACTACCGTGTTTCGGTAGAGATGAGATAAATA
GACTATCATCGACTATAACCCCAAAAGAACGAAATCTCGTAAACAACATAGGTTAACCCATAGTT
TTACTCCGCGTAGCGAAGGGAAGGGGGAGAATGAAGGGAGTATCTCATCGGCGGGGCAATCGTCT
TTACAAGGTAGCCGCACCTTCCAGTATGGCTACCTTGTTACGGCTTCACTCCAGTCACTAGCCCT
GCCTTTCATTCGCTACGCTCAGGAAAGGGATAACCTTGCGATTAAAGTAACAACTTCGGACATGA
CCAGCTCCCATAGTAGGTTCTTTCTATTTATAAAGCAACAGTTGA
Found at i:208796 original size:18 final size:18
Alignment explanation
Indices: 208744--208798 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
208734 ATGAGAAATC
*
208744 AGATTCCCATATTGATGA
1 AGATTCCCATATTGATTA
208762 AGATTCTCC-TATTGATTA
1 AGATTC-CCATATTGATTA
208780 AGATTCCCATATTGATTA
1 AGATTCCCATATTGATTA
208798 A
1 A
208799 TAACTCCGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
17 2 0.06
18 30 0.88
19 2 0.06
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (18 bp):
AGATTCCCATATTGATTA
Left flanking sequence: Indices 208244 -- 208743
CGGCGCCATGCGTGGCCCGCTGGGGGGCGTTTTATTTCAGATGGCACTATCTTGCTTTCTAATGG
AATAATAAGGGCTTTGCCTTTCCCCGGTCCATCGTTTACGGCCCCCTTATCGCATTTCTTACTAT
GAAGGAGATCCCCACTGTTCCTGAGCGCAGCGAAGGGAAGGGGCGGGCCGTTCCCGTTCAGTTGC
ACGAAACCCAACCAAGCTCTGAGTGCAGGGCGATCAAGTACCAGAACCACTTGCTGGTAGGACGG
CGGCGGCCCGGCCGGCTAGGCCGGCATTGTCCCTCAGTTCCTATCAACCTCAGGCCGTGTGTGTA
ATCGACATGTTGCTAGCGTTCCGGCGATAAGAAGAAGTCGTCGAATAAGAAGCTTGCTTCTTCGC
GAGCTCATCCTCTGCTGTCACAACGCGCAACCCTTTCTTATTCATTCAGGGGGTGGGGCTTTGCC
CCTATTAAGAAATCTTTATTTTAATATTCATAAATATGAGAAATC
Right flanking sequence: Indices 208799 -- 209298
TAACTCCGGTTCGATCTGGAGAAGGCTTTGATAGCTCGAGCGGGGGCCGGCCTACTATGGAATAG
GAGGACTTGCAACACGAGAGAGGAAAACGAAAATACGTATTCGAGGCCGAAGCACTTGTTGGCGT
TTCGGGACGGGATAGGAAGCAACCTTATCATCTGAAGCCGGAGACGGGGACAAAGGCAAAGCGAG
CGCTCGGGGAACAAGCGGCGGCCTTCGCCGTAAAGCTCGTCAAGCGGACCGCTGCTGCCTCCCCC
TATTCAATCAATGGATGAATAGATCACAATTAATGATAGCTGCGCAACCAACTGTTCCTTTTTCT
CTTCCCTTGTTCGCCCCGCGAAGCACTTGATTCGCAGAATCAAGACCGCCGCCCTCCTAACAACC
GGCTAAGAAGCAGGCTTGCTCGATCCGCGCAGAACTTATCACAAAGCTGTGATCGGGAGGCACAC
GATGGGAAGTCCGATAAGCGGGAAGGGTAACGGGTTGGAGAGAAT
Found at i:210629 original size:32 final size:32
Alignment explanation
Indices: 210588--210711 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
210578 CTGGCCGGCC
210588 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
210620 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
210652 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
210684 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
210712 TTTACCCTAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 210088 -- 210587
TATTCATAAATATGGGAATATTCAATGCTATGGGAATATTAATACATAGAATCTCTTCAAGATTC
AAAAACTAGACAAGATTCAAAGCCATATACCATGCAAATGCTCTTGAATAAAGAAGATAGGGTGG
ATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATAGGGTGGATGT
ATGCAAGATAGACTGACCGGGCCCATACTAGATTCTATTACTATTCTATTGGATTCAGGTGGATG
GCACTATCGGTAACCGGACTGGATTGGGAATCCTAATAAGATAGGGTGGATGTGGCAATAGGATG
GGCACTGCTCTATACTATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAATC
CATAGTTTTACTCCGCGTAGCGAAGAGAAGGCACGGGCCACTATTCTAAGACACAGGTTATATAC
ACTAATCTATAAGCAGGCACCAGGCCATCACTATGCTGGCCGGCC
Right flanking sequence: Indices 210712 -- 211211
TTTACCCTACACTATAGACGGGGCATGGCCACTGCTAGATCTCTGTTGTAGTAATCAGGATCAGG
GCCTGATCACTGTCACTGTGCCTCTTATTGAATTGATTAGGATCAAGGATCTAATCGCTATGGCT
ATTCACATTGATTAAGGTAGTGTCCAAGCCAAGCCGGTTCGAAAGAATCTAGGATCTAATCGCTA
ATTCATAGTTGCTATGGCATTTAGATCAGGCCTATAACTATGTTAGGATTTAGGGAATATCTAGA
GCATAGAATAGCTCGGATCCATATTCTTAGCCGGTTCAAACCGGATCATGAGCCTATGGCATTGA
ATTAGATAAGGTGCGAACGCACGCTGCCTTGTGGGCTCTATGCCTACTGAGGGTCTTGATCGATC
AGGCCGGCCTTCCCCCGACCTACTCGCTCGGGTCGCGAGGGGAAAGGATGGAGCCGATCACCCAT
CTTACTGGGGACGAGACACTGAACGACATCTCGACACAGGGCGTC
Found at i:215715 original size:32 final size:32
Alignment explanation
Indices: 215105--215707 Score: 1206
Period size: 32 Copynumber: 18.8 Consensus size: 32
215095 GAAAACGATT
215105 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215137 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215169 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215201 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215233 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215265 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215297 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215329 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215361 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215393 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215425 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215457 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215489 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215521 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215553 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215585 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215617 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215649 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
215681 CCTTCCCTTCGCTACGCTCAGGAAAGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGG
215708 TTTAACCTCT
Statistics
Matches: 571, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 571 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 214605 -- 215104
GCACTATTGTTACGCATGGTGAAAGCAGAGGCACCGCAGCACCTTCCGTAGTCTCCAGCTTTTGA
AAATCGATGCGGTAGCCGCTGCAGTACAGCTTATATGCTCTTTATAAGATGTCCACTTTATCGGA
AGGACGAATTGTTGAGGTTAACCCTTTCCTGAGCGTAGCGAAGGGAAGGAAATACAAATATTGGT
TTTTCCGCACGGATGGAAGGAAATAGATAAAGAGATAATGATAAGTTCCCAGAGCAGGGCCACAG
TGAAATAGGTGCTCGGGCCCCCACCGTACCGATCTCCCTAAGGGATTTACAATGATCCCACGCTT
GAACGTGGTTGCTATCGAGTTGAAGAACCCCTGGTCGGAACAACAAGCGCAAAAGAACCAGCTCC
CTTACCGTAGCTTGGCGAGAGTCCCCTATTGAACCAGTATCACGTCTGCCTGGCTATTCTGGTCG
GAATTCACCAATAGTGGCCCGTGCCGTTTCAATCAGAAAACGATT
Right flanking sequence: Indices 215708 -- 216207
TTTAACCTCTATCGACCACATGACTGTTAATACAGGGATCCGCCTATTCTATAAGGATCCGAACT
ATTTTGGATAAGAAAGGCTCCTCAAATCTAGATCTAATACTATTATAGGTGCACACATATGCGTA
TATAGGGGCACACATCTTAAAATATTGGGACATATATGGCATTCACGTTCTATATCAGATATAGG
CATATACCTATATATAAATCTAGGTGCATATATATATGCACAGGCTAGATGCATGGATAGAGATT
CCTGAATCTATCTACAGGTGTGTGTGCTTTTCAGCCCGCCTATAACTCAGCAATGATACCGGGAT
GAGATGAGACTCTATAATCTATCCCCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGA
TGTCCTAACCGCTAGACGAAAGGGACCAAAAACCCATTCTATTTCCTATATCTTCTGTTCCGATC
GGGATGACACTATATTGTTCGTTTTGTCCCTCTATATACGCAATT
Found at i:217341 original size:18 final size:18
Alignment explanation
Indices: 217315--217378 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
217305 GAGTTACATC
217315 TCATCAATATGGGAATCT
1 TCATCAATATGGGAATCT
*
217333 TCATAAATA-GGAGAATCT
1 TCATCAATATGG-GAATCT
217351 TCATCAATATGGGAATCT
1 TCATCAATATGGGAATCT
*
217369 TAATCAATAT
1 TCATCAATAT
217379 AGAATCTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
17 2 0.05
18 37 0.90
19 2 0.05
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (18 bp):
TCATCAATATGGGAATCT
Left flanking sequence: Indices 216815 -- 217314
GTTTCTAGGACCGAACCCGTTCAAGTCTTACTAGTTCCTCCCATAGTGCTTATAGGAGTATGCGG
AGAGTCAGAGTTATCATAGGCATTAAAGAAACAACACTCGAGAGTTACATCTTTTTTCCACGCCA
CTGTTCCTTCACGATCAAAGGGCTGAAAACGAGAGCTCTAGTCTCTAATATAAAGGTTCACTTTG
GATCGCATCAGATCCGGACGTTGCTGTAATTGAGCGTGCTGCCCTCTATTTAAATAAAATAGTAT
GCAACTCTCTCCTCCATAGATTCGATCTTCGCTCCCGCTGGGATTCTCTCTCTTGTTATTCCACA
CATATCTCGTCTGACATGCCCAACTGAGCGTGTTTCGAAACGCTATTCTTGGAAGTGTCCTCTTT
GTTCGCCAAACCCCTATTAATTCCTCATTTCCCTAAGGCTGCTGAAGTTCGGCGATCAGGGTTCA
ATCTTGTTACAGGATTTCGTCGGATCGGTACTCGAGAGTTACATC
Right flanking sequence: Indices 217379 -- 217878
AGAATCTTTTCAAGATTCAAAATTCGAAAAAACTAGACAAAAAGAATGTGACTATATATATGCTC
GAATGTTCTAAGATAGGGTGAATAGATAGATCATAGATTGGCCTGCTATTCCCTTTCAATGCCAT
AATAGTGGCCATATCCTATTCTAAATCGATAGAGAAGATCCGAGCCAAGAACATTTATAGGAGCC
TTAATACCAAATCCCCAATAGTGATGTTAGATCTACGATCGGATCTCTTAACCAACAGTCATGTG
GTAATATAGCAAAAAGGTCAAATCAAACACTTAAATAGAAAACCAATCAACTGAAAGCAATAAGA
GAGGCCATCACTATTGTGGATCACCATCCACAATGGTGATGTTAGATCCCAACGGCTAATAAAGC
TAATTAATAACCTAGAGATCATAAAGAAGTATAAACCATAGCAGCAGTAAGCACAATCCATATAT
TAACGCAAGCTCCTAAGAATCCATTCCATAAGGGAAATATAGACC
Found at i:217362 original size:36 final size:35
Alignment explanation
Indices: 217315--217386 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
217305 GAGTTACATC
*
217315 TCATCAATATGGGAATCTTCATAAATAGGAGAATCT
1 TCATCAATATGGGAATCTTAATAAATA-GAGAATCT
* *
217351 TCATCAATATGGGAATCTTAATCAATATAGAATCT
1 TCATCAATATGGGAATCTTAATAAATAGAGAATCT
217386 T
1 T
217387 TTCAAGATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 8 0.24
36 25 0.76
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (35 bp):
TCATCAATATGGGAATCTTAATAAATAGAGAATCT
Left flanking sequence: Indices 216815 -- 217314
GTTTCTAGGACCGAACCCGTTCAAGTCTTACTAGTTCCTCCCATAGTGCTTATAGGAGTATGCGG
AGAGTCAGAGTTATCATAGGCATTAAAGAAACAACACTCGAGAGTTACATCTTTTTTCCACGCCA
CTGTTCCTTCACGATCAAAGGGCTGAAAACGAGAGCTCTAGTCTCTAATATAAAGGTTCACTTTG
GATCGCATCAGATCCGGACGTTGCTGTAATTGAGCGTGCTGCCCTCTATTTAAATAAAATAGTAT
GCAACTCTCTCCTCCATAGATTCGATCTTCGCTCCCGCTGGGATTCTCTCTCTTGTTATTCCACA
CATATCTCGTCTGACATGCCCAACTGAGCGTGTTTCGAAACGCTATTCTTGGAAGTGTCCTCTTT
GTTCGCCAAACCCCTATTAATTCCTCATTTCCCTAAGGCTGCTGAAGTTCGGCGATCAGGGTTCA
ATCTTGTTACAGGATTTCGTCGGATCGGTACTCGAGAGTTACATC
Right flanking sequence: Indices 217387 -- 217886
TTCAAGATTCAAAATTCGAAAAAACTAGACAAAAAGAATGTGACTATATATATGCTCGAATGTTC
TAAGATAGGGTGAATAGATAGATCATAGATTGGCCTGCTATTCCCTTTCAATGCCATAATAGTGG
CCATATCCTATTCTAAATCGATAGAGAAGATCCGAGCCAAGAACATTTATAGGAGCCTTAATACC
AAATCCCCAATAGTGATGTTAGATCTACGATCGGATCTCTTAACCAACAGTCATGTGGTAATATA
GCAAAAAGGTCAAATCAAACACTTAAATAGAAAACCAATCAACTGAAAGCAATAAGAGAGGCCAT
CACTATTGTGGATCACCATCCACAATGGTGATGTTAGATCCCAACGGCTAATAAAGCTAATTAAT
AACCTAGAGATCATAAAGAAGTATAAACCATAGCAGCAGTAAGCACAATCCATATATTAACGCAA
GCTCCTAAGAATCCATTCCATAAGGGAAATATAGACCATAAATCA
Found at i:228174 original size:17 final size:17
Alignment explanation
Indices: 228152--228185 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
228142 GCAGAGCTAT
228152 CCCTAC-TCTCTATACCC
1 CCCTACTTC-CTATACCC
228169 CCCTACTTCCTATACCC
1 CCCTACTTCCTATACCC
228186 GGCGGGCAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.18, C:0.53, G:0.00, T:0.29
Consensus pattern (17 bp):
CCCTACTTCCTATACCC
Left flanking sequence: Indices 227652 -- 228151
CCAGCGGTCAGATAGCGCCCTTTCTCGTGCCAGGATCTTGTCCAAGCCTACGCCTTTATCCTCTC
CATCCCTGGCCCGGCCCGAAGCTTCCTTTCCCCGCTACTCGAGTCGCCCCCCTTTCCCCTAGGCA
GAGCCTTTTCCCGCAACACCGGATCGATACCTCTTCGATCTTGATTTCCCCCCATTCATGCTCTC
ATTCACCCCCGGCACCAGATCTAATTCAATGCCATAGGCTCAATAGTGATTAGATCCTATTATAT
CTCTTTTACTCTGTTTGTGAACATTCCCATATTTAGGAACAGGCATATTGGCCGGCCCCTTTCAT
TCCCCCTCACTGGAGGTTATCTGGGGAAACCCCCCTTTCGTCATCCTCAAGGCCAACGGCCCGGG
AACGGGGCAAGGCAATAGTGCCCTATTGATTGGAATAAAGGGCCAGAGCGGGACGGAACCTACCT
ACCTTTCCGTACCCACAGCAGGAAGCGGTACGCAGGCAGAGCTAT
Right flanking sequence: Indices 228186 -- 228685
GGCGGGCAGACCTATCTCCCTCCTATTACTGAGGTGGTTCCATACTACCCTCAGATCGAGGATCA
CGATATCTCCGCTTTATGAGATCGAGGATCGATACAATGCCTATCCCGGATCGAACATTCTTTCA
TTATCTCCTTCCCGAGATCGAACTGATCCTGTTGTTGGTTATACTCCGGTTGGTGAAGTCGCCGA
GCGAATTGAATTGCCCGAGACGTCGTAGAGGTTCGCTGGCGGGACGAGCTCAACTGACCCAGCAT
GATCCACTCATCACGCTAGGAACCACCATAGCATGTCGGTGGCACACTGGGCTTAGCCAGCCGGC
CTCGCTCGATTTATTCATTCTTTCTTTCTTTGGAGTATCCGGGTAGAGCGAGTATAACACGGAAC
ACGTCGGTTTTCTAACGTTGGAGGGCCAAGCAAGGTAGGGGGAGCACACCCAACGACCCTCGACG
AAGGCGGAAGGACACGGAAGAGAAGGCCTTCGAATAAGTCGGATA
Found at i:228924 original size:32 final size:32
Alignment explanation
Indices: 228880--228978 Score: 189
Period size: 32 Copynumber: 3.1 Consensus size: 32
228870 TCTCTTCCCG
*
228880 AGGTTATACCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
228912 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
228944 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
228976 AGG
1 AGG
228979 GAGGGCGCGC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 66 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (32 bp):
AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
Left flanking sequence: Indices 228380 -- 228879
AGCGAATTGAATTGCCCGAGACGTCGTAGAGGTTCGCTGGCGGGACGAGCTCAACTGACCCAGCA
TGATCCACTCATCACGCTAGGAACCACCATAGCATGTCGGTGGCACACTGGGCTTAGCCAGCCGG
CCTCGCTCGATTTATTCATTCTTTCTTTCTTTGGAGTATCCGGGTAGAGCGAGTATAACACGGAA
CACGTCGGTTTTCTAACGTTGGAGGGCCAAGCAAGGTAGGGGGAGCACACCCAACGACCCTCGAC
GAAGGCGGAAGGACACGGAAGAGAAGGCCTTCGAATAAGTCGGATAAGATAGCGCAGGCGCCAAA
CGATTTACGACAAGAATAAATAGGGGGGGAGGTTTAGCCGCGTTCCAATCTATTCATTTGATAGG
GCAGTTATCAGGGGGAGGTTGAGATCGATATGAGTATGACTCGGCGAACCTACTGATTCGGACCA
AATCTCATAGTGGCTCGGCACTCCAAAGAGTTCAGTCTCTTCCCG
Right flanking sequence: Indices 228979 -- 229478
GAGGGCGCGCGCTCCCCTTTGTCTGCGGGGGCTTTCCCGCCCCGGCCGGCCGCCTTCGGCGTCAG
CAGGGTCGTCGTCTTACTCCATGCATAAGCAGCTACCTTGGGGGACGAGGCGGCAGCCGCAGCTG
CATTATTACTTCTATCACTATGGGTGGGTGGGGTGCTAAACATCTTCTTACGGCGGTCATAACCA
GGAACCCCCCTACCCCCTTGAATGAGTAAGGAGTAGTAAGGTTCCCGGAGATCATGTATCTTATA
GTCGGAAGCAGAGAATAGGCATTTGCTTTTTAGGGCCTATAACCAAAAGTAGGCGGCTTCTACCC
CCACTAGCCACCATCGAGCTCCCGACCTGGGCAAACGTTTGCGAAGGATTCCCAGTCCAAGGCTG
TTACTTAATTTTGATTGATTCCGAGTGAGATCTTTTCCCTTTTCCTCCCTTGAATCAATCTTTTC
TCTCGAATGACCGTGCAACCTTTGTTCGGAGGAGTATTGGTTCGT
Found at i:233235 original size:48 final size:47
Alignment explanation
Indices: 233162--233261 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 47
233152 TCATCACCTG
* *
233162 ATGGCTATTTAATATTCACATTGATTAGGATCAAGAATCTAATCGCT
1 ATGGCTATTCAATATTCACATTGATTAGGATCAAGAATCTAATCACT
233209 ATGGCTATTCACATATTCACATTGATTAGGATCAAGAATCTAATCACT
1 ATGGCTATTCA-ATATTCACATTGATTAGGATCAAGAATCTAATCACT
233257 ATGGC
1 ATGGC
233262 ATTTCTTACG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 10 0.20
48 40 0.80
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (47 bp):
ATGGCTATTCAATATTCACATTGATTAGGATCAAGAATCTAATCACT
Left flanking sequence: Indices 232662 -- 233161
CTCCTTTTGCAAGAGAAGCGTCCGGCGCTTTATCCCTTTTTAATCACATAGTCTAAATAGCATAC
ATAGATTGGCCCTCGCTACGCTCAGGAAAGGGTTAACCTTTTTTAGTCACAGATTTGAATGAAAA
CCCGTCACACAATAGGATTTTCCACTCTAGTGTTCTCTTTCCTTTCTTAGTTCGAAATAGCAATT
TTGAATTACAAAGGCTAAATCCAATTAGAGTGTTCTTTTAATCCTTATTTATCACAATTGTTAAT
AGTAGGATCTAATCACTATTCATCTAAGACAAATCAAGACAAGGGCAATAGAATACCATAGAGCC
TACAACAGAGATCTAGTTCGGATCCCTATGGATTAGGATGTTCCCTATTAATCAGGATCAGGGCC
TGATCACTATGGCTATTCACATCCCTTAGGATCAAGGAATTCATATTACAGTTATTGATTAAGAT
CCAAGCCGGTTAGAAAGATCAAGCATCGATTAGAATCATCACCTG
Right flanking sequence: Indices 233262 -- 233761
ATTTCTTACGTATTTCTTCGAATCAATAATAGGATTCTACTATATTCTTACGCAGGTGATTAGGA
TCAATAATATAATGAATATGATGTGCGTATATATTAATATCAAGCAGGTTATTAGAATCTAGGGA
ATATATAGATAATAGAATAGAATTCTTCTTAGTATTTAGCTGCAACAACTACGGAACGACGAGAA
CCGAGTCGATATTATTGGCGGCGACAAACGAAGCACCGGCAACAACCAGAGCAGCAATAAACAAG
TGCTTATTGTATTGGCGGCGCCGACAGCTTCTTTTTAGAATGAATAGATAGGCACTACCAATCAA
GATGTCCAAGTTGAGAAGCTTTGAACTTGAGCAGCCGGGAAGCGTTGAGGAGTTACTTCTATGAT
ATGAAGAGTAGGAGCAGTTGGTTTCATCAAGAGTCACTATGGGAACGAGCTTTCAAAATCGATTC
TCTCTGTTTCCACAAAGCTTCGCCTCCTATTCATCCCCGGCCCTT
Found at i:239317 original size:68 final size:68
Alignment explanation
Indices: 239234--239403 Score: 322
Period size: 68 Copynumber: 2.5 Consensus size: 68
239224 TTTATAACAA
*
239234 TAGAGTGCCGTAGTATCTCTCTTTGTTCTTTTGATTTCCACATAGTGACTCATCTATAACAATAA
1 TAGAGTGCCGCAGTATCTCTCTTTGTTCTTTTGATTTCCACATAGTGACTCATCTATAACAATAA
239299 TAG
66 TAG
*
239302 TAGAGTGCCGCAGTATCTCTCTTTGTTCTTTTGATTTCCACATAGTGACTCATTTATAACAATAA
1 TAGAGTGCCGCAGTATCTCTCTTTGTTCTTTTGATTTCCACATAGTGACTCATCTATAACAATAA
239367 TAG
66 TAG
239370 TAGAGTGCCGCAGTATCTCTCTTTGTTCTTTTGA
1 TAGAGTGCCGCAGTATCTCTCTTTGTTCTTTTGA
239404 CAATAGTGAT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 100 1.00
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (68 bp):
TAGAGTGCCGCAGTATCTCTCTTTGTTCTTTTGATTTCCACATAGTGACTCATCTATAACAATAA
TAG
Left flanking sequence: Indices 238734 -- 239233
TAGAAGCAGTAGTATTTGGGGGTTGACCACTAAGAAGCGAAATTCTCTCTTACAACTGGTTTTAG
TAGGGAACGACTGTAGTAGTATAGTGAATAATCCTTGATCCCGCCCGTTCTTCGAACAGCTGTAG
GGTTTCAGCTTCAATGAATGTTGTCCCTATCCCATGGCTAGTCCGGTCCTTTCGTTCCTGGCTTT
CCATTGTCAACGGGTTGGCCGGCTTATTCTCCTTCCTCAGGCCGCTCCAGCCTAGAACCCATAAA
GCCAGCGATGCGCAGGCTCGCCAGTGCCCCCTTAATCGAACTAGAAATGAAAGTGTGTCGTTATT
CGGGAAGATGTCGCTCCGGTTCAATCAATGCCGGATCGACCAGCAAGCATAACTTTTAAGGCACG
GGTCTTGTTCAACACCTATATATTGTATTTCCTATTCCGGTTCTTCTTTTTGATTTCCCAACAGT
GACTCATCTCTTTTTCTTTTGATTTCTACAACTTATTTATAACAA
Right flanking sequence: Indices 239404 -- 239903
CAATAGTGATAGTGCCATCTCTTTCTTTTTTGTTTTGATTTCCCTATCTTTTTTTTTTTGTTCTT
TTTGATTCCCTAACGGAAACAATAGTGATAGTGCCATCTCTTTAACAATAGTGACTCATCTATAA
CAATAGTGATAGTGCCGTAGTATCTCTCTCTTTTTTTTTCTTTCCTAACGGACGGAAACAACTCA
TCAACAACAAAACTCTTTTTTAATCACATATTAGAAATAGAGTTCTTTATAGACTGCAGCCTTCA
ATATGTTTTTAAGTGCGAATCTCTTTTTCTTTCAATAGGGGCAAGATCTAATAAGAGAGGCTCCA
CTACCGTCTATAGTGTAGGGCCTGATCCAATAGTGATCTATCTTCTATCGACCACATCTTTTTGA
AGAGGTTCAAAATAGTAGCCGGCTCTTTTTCTTTTCAATAGGGGCAATATCTAATAAGAAAGACT
AAGAGTATAATTCGATAGTGATCTATCTTCTATCGACCACATCTT
Found at i:245672 original size:140 final size:140
Alignment explanation
Indices: 245516--245786 Score: 515
Period size: 140 Copynumber: 1.9 Consensus size: 140
245506 GCTCAGGAAA
245516 GGGATGTGCCTTCAGGCCGATCTCGACTTTGATCCGACTATAACAACATCGAGCTAAAAAGAGCA
1 GGGATGTGCCTTCAGGCCGATCTCGACTTTGATCCGACTATAACAACATCGAGCTAAAAAGAGCA
245581 AGAGAACACCCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGA
66 AGAGAACACCCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGA
245646 GTAAAACTAT
131 GTAAAACTAT
245656 GGGATGTGCCTTCAGGCCGATCTCGACTTTGATCCGACTATAACAACATCGAGCTAAAAAGAGCA
1 GGGATGTGCCTTCAGGCCGATCTCGACTTTGATCCGACTATAACAACATCGAGCTAAAAAGAGCA
** *
245721 AGATCACCCCCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGA
66 AGAGAACACCCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGA
245786 G
131 G
245787 GGATGTGCCT
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (140 bp):
GGGATGTGCCTTCAGGCCGATCTCGACTTTGATCCGACTATAACAACATCGAGCTAAAAAGAGCA
AGAGAACACCCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGA
GTAAAACTAT
Left flanking sequence: Indices 245016 -- 245515
CACTATTGAAAAAACATTAAGCTAAAAAAAGAGAGAGAACACTATGCACTATCTAAAAAGAAACA
TTAAGCTAAGAAAAGAAAAAGAACTGAAATTTTATTAATAAAGGATTAAAAAGGCACTCTAATTG
GATTTAGACTTTGTAATTAAAGAATGCTATAAAACCATTGAGCTAATTGTGTGACGGGTTTTCAT
TCAAATCTGTGACTAAAAAAGGTTAACCCATAGTTTTACTCCGCGTAGCGAGGGCCAAATCTATG
TATGTTCTTTCTACTCTGTGATTAAAGAGGGCACTAGAAGAACTTCAAGCTATTGAAGAAAAAAG
AACTAAAAAAAAACTTCAAGCTAAAAAAAGAGAGAGAACACTATGCACTGTTCTTTATACATCGT
GATTAAAAAGAGACTAAATATTCTACTCTTTAAAAAGAGATTAAAAAAAACAACATCGAGCTAAA
AAGAGCAAGAGAACACCCGTCCTTCCCTTCGCTACGCTCAGGAAA
Right flanking sequence: Indices 245787 -- 246286
GGATGTGCCTTCTGCAGGATTGAGCTAAGAAAGGAAAGAGAACACTCTAGTGGAAAATCCTATTG
TGTGACGTTTTTCTATAAAATGTGATGAAAGAAGGGTCACTATTGAATTGGATTCAAACTATGTG
ATTAAAAAGAGATTAAATTCTACTATGTGAAATTAAAGAGATTAACCTCAAACCCCTCAACTTGG
ACATCTTGATTGGTAGTGCCTATCTCTTTCTTATCAAAATCTTGGAAGGAACTCACTCTATCGAA
TCGAAGTTCGGAATCCGACTTGCCGGCAACAGGCACATTACCATTCCGAAGATCCCGAGGTAAAC
CCTTTCCTGAGCGTAGCGAAGGGAAGGCTGGATTCCTGGGCTGGTCATAGGCATGAGGGATGCGA
AGCCGCATTCAATTCAATTCTTGTCTTTGTCAAGCATTAGTGATACTTTAGAATACTTGATCTTC
CGGATCGGATGGCACTATCTTAAGATGCATGCAGGGAAATTCAAA
Found at i:255161 original size:81 final size:81
Alignment explanation
Indices: 255026--255178 Score: 236
Period size: 81 Copynumber: 1.9 Consensus size: 81
255016 GGAAGGACGG
* * * *
255026 GATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCCAATTAGAGTGCC
1 GATCTTGCTCTTTTTAGCTCAATGTTGCTATAGCCAGATCAAAGTCGAGATCCAATTAGAGTGCC
255091 CTCGGCCGCCGGGTGT
66 CTCGGCCGCCGGGTGT
*
255107 GATCTTGCTTTTTTTAGCTCAATGGTT-CTATAGCCAGATCAAAGTCGAGATCCAATTAGAGTGC
1 GATCTTGCTCTTTTTAGCTCAAT-GTTGCTATAGCCAGATCAAAGTCGAGATCCAATTAGAGTGC
*
255171 CTTCGGCC
65 CCTCGGCC
255179 TTTATTAAGA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 62 0.95
82 3 0.05
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.33
Consensus pattern (81 bp):
GATCTTGCTCTTTTTAGCTCAATGTTGCTATAGCCAGATCAAAGTCGAGATCCAATTAGAGTGCC
CTCGGCCGCCGGGTGT
Left flanking sequence: Indices 254526 -- 255025
TGGATACACAAAAAATAGTGCATACAACGTTGACACTATTGTTAGATCCACGATCGGATCCCTTG
ACTAACAGTCATGTGATAATATAGAGGTTAAACCTTCCCTGAGCGTAGCGAAGGGAAGGCACATC
CCATAGTTTTACTCCGCGTAGCGAAGGGAGGGACACCATAGAGATCTCTTTTTAATCACATAGTT
TTATAGTGCACAGGGTTGAAGAATCTAGTTCACCCTCTTTAATCACACAATCTTCATAGTGACCC
TTCTTTCATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCCACTAGAGTGTTCTCTTTC
CTCTCTTGTAGTGGCTCAATCTTCTTTTCTTCATAGTGTTCTCTTGCTTTTTTTAGCTCGATGTT
GTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACATCCCATAGTTTTACTCCGCGTAGCG
AAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGG
Right flanking sequence: Indices 255179 -- 255678
TTTATTAAGAGGTTAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAG
CGAAGGGAAGGACGGGTGTGATCTTGCTTTTCTTAGCTTAATGTTTCTTTTTAGATAGTGCATAG
TGTTCTCTCTCTTTTTTTAGCTTGAAGTTCTTCTAGTGCCCTCTTTAATCACAGAGTTGAAGAAT
CTAGTTCACCCTCTTTAATCACACAATCTTCATAGTGACCCTTCTTTCATCACATTTTATAGAAA
AACGTCACACAATAGGATTTTCCACTAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAA
GGCACATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGCTCTTTTTAGCTCGATGTT
GTTATAGTCGGATCAAAGTCGAGATCCAATTAGAGTGCCTTCGGCCTTTATTAAGAGGTTAACCC
TTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTA
Found at i:255231 original size:32 final size:32
Alignment explanation
Indices: 255188--255254 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
255178 CTTTATTAAG
255188 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
*
255220 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
255252 AGG
1 AGG
255255 ACGGGTGTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (32 bp):
AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
Left flanking sequence: Indices 254688 -- 255187
ACACCATAGAGATCTCTTTTTAATCACATAGTTTTATAGTGCACAGGGTTGAAGAATCTAGTTCA
CCCTCTTTAATCACACAATCTTCATAGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCAC
ACAATAGGATTTTCCACTAGAGTGTTCTCTTTCCTCTCTTGTAGTGGCTCAATCTTCTTTTCTTC
ATAGTGTTCTCTTGCTTTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTG
AAGGCACATCCCATAGTTTTACTCCGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCG
AAGGGAAGGACGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATC
CAATTAGAGTGCCCTCGGCCGCCGGGTGTGATCTTGCTTTTTTTAGCTCAATGGTTCTATAGCCA
GATCAAAGTCGAGATCCAATTAGAGTGCCTTCGGCCTTTATTAAG
Right flanking sequence: Indices 255255 -- 255754
ACGGGTGTGATCTTGCTTTTCTTAGCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCTCTCTC
TTTTTTTAGCTTGAAGTTCTTCTAGTGCCCTCTTTAATCACAGAGTTGAAGAATCTAGTTCACCC
TCTTTAATCACACAATCTTCATAGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCACACA
ATAGGATTTTCCACTAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCACATCCCT
TTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGG
ATCAAAGTCGAGATCCAATTAGAGTGCCTTCGGCCTTTATTAAGAGGTTAACCCTTTCCTGAGCG
TAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGTGTGATCTTGCTTT
TCTTAGCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCTCTCT
Found at i:255667 original size:32 final size:32
Alignment explanation
Indices: 255624--255690 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
255614 CTTTATTAAG
255624 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
*
255656 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
255688 AGG
1 AGG
255691 ACGGGTGTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (32 bp):
AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
Left flanking sequence: Indices 255124 -- 255623
CTCAATGGTTCTATAGCCAGATCAAAGTCGAGATCCAATTAGAGTGCCTTCGGCCTTTATTAAGA
GGTTAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAG
GACGGGTGTGATCTTGCTTTTCTTAGCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCTCTCT
CTTTTTTTAGCTTGAAGTTCTTCTAGTGCCCTCTTTAATCACAGAGTTGAAGAATCTAGTTCACC
CTCTTTAATCACACAATCTTCATAGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCACAC
AATAGGATTTTCCACTAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCACATCCC
TTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCG
GATCAAAGTCGAGATCCAATTAGAGTGCCTTCGGCCTTTATTAAG
Right flanking sequence: Indices 255691 -- 256190
ACGGGTGTGATCTTGCTTTTCTTAGCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCTCTCTC
TTTTTTTAGCTTAATGTTTTTTACATTCTAATTTGAAAGCTGAAACTCTTTCTTTTTGGATCTAA
ACTACGACAAATCAAAATAGAAGCAATAGAGAGAGAGGCCATCGTGGATACACAAAAAATAGTGC
ATACAATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGATGAAGAGAGGCTCCACTATCGG
GAATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGATGAAGAGAGGCTCCACTATCGGGAA
GGGCTATTACTATGATATGGCACGGGATCCGGGAGCCGGGCCACTGTGCCAATAGTGGTGGGATC
CATTGATAAGATAGGGTGGATGTGGCAATAGGATGGGCACTGCTCTATGGCTGCACCCACAAGGA
GATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCGT
Found at i:255987 original size:62 final size:62
Alignment explanation
Indices: 255890--256015 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
255880 TAGTGCATAC
255890 AATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGATGAAGAGAGGCTCCACTATCGGG
1 AATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGATGAAGAGAGGCTCCACTATCGGG
255952 AATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGATGAAGAGAGGCTCCACTATCGGG
1 AATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGATGAAGAGAGGCTCCACTATCGGG
256014 AA
1 AA
256016 GGGCTATTAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (62 bp):
AATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGATGAAGAGAGGCTCCACTATCGGG
Left flanking sequence: Indices 255390 -- 255889
AATCACACAATCTTCATAGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCACACAATAGG
ATTTTCCACTAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCACATCCCTTTCCT
GAGCGTAGCGAAGGGAAGGACGGGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAA
AGTCGAGATCCAATTAGAGTGCCTTCGGCCTTTATTAAGAGGTTAACCCTTTCCTGAGCGTAGCG
AAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGTGTGATCTTGCTTTTCTTA
GCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCTCTCTCTTTTTTTAGCTTAATGTTTTTTAC
ATTCTAATTTGAAAGCTGAAACTCTTTCTTTTTGGATCTAAACTACGACAAATCAAAATAGAAGC
AATAGAGAGAGAGGCCATCGTGGATACACAAAAAATAGTGCATAC
Right flanking sequence: Indices 256016 -- 256515
GGGCTATTACTATGATATGGCACGGGATCCGGGAGCCGGGCCACTGTGCCAATAGTGGTGGGATC
CATTGATAAGATAGGGTGGATGTGGCAATAGGATGGGCACTGCTCTATGGCTGCACCCACAAGGA
GATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCGTAAGGTTATCCCTTTCCTGAG
TGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTTGCACACTGCACCCCAGGCCAC
GGGCCATCACTGTGCTGGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTT
CGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATC
TACTGGGGATCATACTATAATAGTGGAGCATGCAGTGACATATAAAGTGGATGGCCCTTGCTGTT
ATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCGGCCACTGT
Found at i:256341 original size:32 final size:32
Alignment explanation
Indices: 256300--256380 Score: 162
Period size: 32 Copynumber: 2.5 Consensus size: 32
256290 CTGGCCGGCC
256300 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
256332 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
256364 CCTTCCCTTCGCTACGC
1 CCTTCCCTTCGCTACGC
256381 GGAGTAAAAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 255800 -- 256299
ACTCTTTCTTTTTGGATCTAAACTACGACAAATCAAAATAGAAGCAATAGAGAGAGAGGCCATCG
TGGATACACAAAAAATAGTGCATACAATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGAT
GAAGAGAGGCTCCACTATCGGGAATGTTGGCACTCTACTATTGGGTGGGGCACTCTATTGATGAA
GAGAGGCTCCACTATCGGGAAGGGCTATTACTATGATATGGCACGGGATCCGGGAGCCGGGCCAC
TGTGCCAATAGTGGTGGGATCCATTGATAAGATAGGGTGGATGTGGCAATAGGATGGGCACTGCT
CTATGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCG
TAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTT
GCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCC
Right flanking sequence: Indices 256381 -- 256880
GGAGTAAAACTAATAGTGTGGGATCTACTGGGGATCATACTATAATAGTGGAGCATGCAGTGACA
TATAAAGTGGATGGCCCTTGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCGGCC
ACTGTCTATGCACTGTGCCCAATAGTCTCTCATGGCACTGGGGCCAGCCACTATCCACCGTGCCT
TCACACCCTTCTATTCAAAGAAGATCGGGTGGATGTCTACACCACAGGCGGGCCGGGGCTCTATA
CTATTCACTATCAGATCCCCAATAGTACCAATAGAATAGTAGCCGGCCACTATTGGTTCAGTGGC
CCGGCCTCCCTCCGAGTGCAAGTGCCGGATCCATTGGCTAAGGGTTGTCCTATACTGTGTGACCT
ATGGAACAGGGGGATCACCACGTGCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTT
CGCTACACTCAGGAAAGGGATAACCTTCCCTTTGCTACGGGGTTA
Found at i:256836 original size:32 final size:32
Alignment explanation
Indices: 256795--256874 Score: 142
Period size: 32 Copynumber: 2.5 Consensus size: 32
256785 TCACCACGTG
256795 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
256827 CCTTCCCTTCGCTACACTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
256859 CCTTCCCTTTGCTACG
1 CCTTCCCTTCGCTACG
256875 GGGTTAACCT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.25
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 256295 -- 256794
CGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGG
ATAACCTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCTACTGGGGATCATACTATA
ATAGTGGAGCATGCAGTGACATATAAAGTGGATGGCCCTTGCTGTTATAGGGTGGATGTGGCGTA
GTGCATAGACAGTAGCCGGCCACTGTCTATGCACTGTGCCCAATAGTCTCTCATGGCACTGGGGC
CAGCCACTATCCACCGTGCCTTCACACCCTTCTATTCAAAGAAGATCGGGTGGATGTCTACACCA
CAGGCGGGCCGGGGCTCTATACTATTCACTATCAGATCCCCAATAGTACCAATAGAATAGTAGCC
GGCCACTATTGGTTCAGTGGCCCGGCCTCCCTCCGAGTGCAAGTGCCGGATCCATTGGCTAAGGG
TTGTCCTATACTGTGTGACCTATGGAACAGGGGGATCACCACGTG
Right flanking sequence: Indices 256875 -- 257374
GGGTTAACCTACGGGGCATGGCTATGGCATTTAACTATGATCAGGCCTAGAACTCTCTAATAGTA
TTCAGGCCAGGCCGGTTATTAATAGTATTAGATCTAGATTTGAGGAGCCTTTCTTATCCAAAAGA
GTTCGGATCCTTAAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGAATAGTTCGGATCCCT
ATTTATTAGAAGAGATCATATAATGAAGATTATTACGTATTGATTAGAATCAAGAATCTAATCGC
TATGGCTATTCACATATTCACATTGATTAAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTA
GAATCATCACCTGATGGCTATTGAATATTCACATTGATTAGGATCAAGGATCTAATCACTATTAG
GATAGCAGCGATATTAGAATCCAGGGCCTGATCACTGAATTCTATTACAGTTATTGATTAAGATC
AAGTATTGATTGGGATCAAGTATTTCTTAGTACTAGATGCGAGGG
Found at i:257338 original size:17 final size:17
Alignment explanation
Indices: 257316--257353 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
257306 CTATTACAGT
257316 TATTGATTAAGATCAAG
1 TATTGATTAAGATCAAG
**
257333 TATTGATTGGGATCAAG
1 TATTGATTAAGATCAAG
257350 TATT
1 TATT
257354 TCTTAGTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.39
Consensus pattern (17 bp):
TATTGATTAAGATCAAG
Left flanking sequence: Indices 256816 -- 257315
GAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAACCTTCCCTTTGCTACGGGGTTA
ACCTACGGGGCATGGCTATGGCATTTAACTATGATCAGGCCTAGAACTCTCTAATAGTATTCAGG
CCAGGCCGGTTATTAATAGTATTAGATCTAGATTTGAGGAGCCTTTCTTATCCAAAAGAGTTCGG
ATCCTTAAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGAATAGTTCGGATCCCTATTTAT
TAGAAGAGATCATATAATGAAGATTATTACGTATTGATTAGAATCAAGAATCTAATCGCTATGGC
TATTCACATATTCACATTGATTAAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCA
TCACCTGATGGCTATTGAATATTCACATTGATTAGGATCAAGGATCTAATCACTATTAGGATAGC
AGCGATATTAGAATCCAGGGCCTGATCACTGAATTCTATTACAGT
Right flanking sequence: Indices 257354 -- 257853
TCTTAGTACTAGATGCGAGGGCCGGCCAATATTTCAAAATATTGGATAGCACAGAGAGAGCATGA
GGTTGAGACTTATTATGGGAAGCCACGACGGAACAGTCAAATACTTGAAGTGCATTCTACAGGGG
TCGAACCTGTGACCATCGACTTAGGAGGTTGTTGCTCCATCCAACTGGGCCAAGAATGCTAGCAG
TACATCACGAATTGATGAAACTTCGCGAACAGAAGAGAGAGTGAACTCCACGTGAAAAAGAAGCT
GTCGAGCAGCCTCGCAGCAATAGCGGATGAAGGCTGGCTGTAGGAGGAAGAGCAAGAGAAAGAAA
CCACTTCTTACAAAGTAAGGGACGCCGCCTAGGCTCCCTCCTTCACCCTTTCCCCCCGGCCCGGC
CCGCCCGATCGGGACCTTCTTTGAAGGAATCCTTTCGTAAGCCGCCCGTTGTGGTGGTTGATGGT
TCTAGCCATGGAACAGGAAAGAGCATCCGTCAAAAGGTCCTATCG
Found at i:261356 original size:46 final size:46
Alignment explanation
Indices: 261304--261393 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
261294 GAGCCTTTCG
*
261304 CCTGAGACAGTATGGGGTCCATAAATGAATGGATCAAGATCAATGT
1 CCTGAGACAGTATGGGGTCCATAAATGAATGGATCAAAATCAATGT
261350 CCTGAGACAGTATGGGGTCCATAAATGAATGGATCAAAATCAAT
1 CCTGAGACAGTATGGGGTCCATAAATGAATGGATCAAAATCAAT
261394 AGTGATGGCC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (46 bp):
CCTGAGACAGTATGGGGTCCATAAATGAATGGATCAAAATCAATGT
Left flanking sequence: Indices 260804 -- 261303
GAGATGGCACTTAGACTATTGTTGTTGAACGGACGGAAACAACTCATCAACAACAATAGTCTAAG
TGCCATCTCTCTTTTTTTATTCATAAGTGTCATCTCTTTTTTTTTCGAAACATTTCATTACAGTT
CAATAGTTCATTCTTTTTTAATCACATATTCTAAATAGAGTTCTTTATAGACTGCAGCCTTCAAT
ATGTTTTTAAGTGCCATCTCTTTTCGGAAACTGTAGGTGCCGGCACGCTCGATACAGTCTGTAGG
CGGACGCAATGTGGACGGGGATGCCTCCCACTACAGGTATGCGTCGATCTCGATCCTCGATATGT
CTTGTGCCCTCCCAGCATCTTGTCATAGGCTGTCACCACGATTCCTCCGTCTAGTCCGAAGCTCT
CTGCAAGTGCCTGAGACTGATACACTGTCATTGATACGAGCTCCAGCCGTTCAGATCAATTGCGG
TACGGACCTTAGATAGATTAATAAATCGAAAGAAAGAGCCTTTCG
Right flanking sequence: Indices 261394 -- 261893
AGTGATGGCCTCTTTGTACCATTCATAAAAAAAGCTAGCGGTGTGCCATTATAGGATTAGGGACG
AGAAAGGGGGGTCAAGAGCAGGACCCAGGGTTTTTTTTGCGTGTACTGCTCGATCTGTTCCGATC
CCAGCCCCTTATTCATTCTTCAGAAACATGTGGGCTTTATCAAACTACTCGCAAGGCCGATACCA
AATCCCCCTCCTTCTCGGACCGTGAAAGTATCAGAGACATCACCCCTATGAATAGGAAAGAAAGG
ATAGAGAGTGCTGCAGATGCGAAGCTTTCGGTCTGAAGATAAAGCTTGGGACCAGTAACGGAAGA
AGAGCTTCTAAATGCCTAACTCCGGGAATATCCGGGTCTATATAGTAGTGGACAATAGGGACCCC
TCACACAATATGTAATGTGAAGAGATCAGGGACATGTTCATCAATATGGGAATCTTCATAAATAG
GAGAATCTTCATCAATAGAATATGGGAATCTTAATCAATATAGAA
Found at i:261847 original size:18 final size:18
Alignment explanation
Indices: 261820--261866 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
261810 CAGGGACATG
261820 TTCATCAATATGG-GAATC
1 TTCATCAATA-GGAGAATC
*
261838 TTCATAAATAGGAGAATC
1 TTCATCAATAGGAGAATC
261856 TTCATCAATAG
1 TTCATCAATAG
261867 AATATGGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 2 0.08
18 24 0.92
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (18 bp):
TTCATCAATAGGAGAATC
Left flanking sequence: Indices 261320 -- 261819
GTCCATAAATGAATGGATCAAGATCAATGTCCTGAGACAGTATGGGGTCCATAAATGAATGGATC
AAAATCAATAGTGATGGCCTCTTTGTACCATTCATAAAAAAAGCTAGCGGTGTGCCATTATAGGA
TTAGGGACGAGAAAGGGGGGTCAAGAGCAGGACCCAGGGTTTTTTTTGCGTGTACTGCTCGATCT
GTTCCGATCCCAGCCCCTTATTCATTCTTCAGAAACATGTGGGCTTTATCAAACTACTCGCAAGG
CCGATACCAAATCCCCCTCCTTCTCGGACCGTGAAAGTATCAGAGACATCACCCCTATGAATAGG
AAAGAAAGGATAGAGAGTGCTGCAGATGCGAAGCTTTCGGTCTGAAGATAAAGCTTGGGACCAGT
AACGGAAGAAGAGCTTCTAAATGCCTAACTCCGGGAATATCCGGGTCTATATAGTAGTGGACAAT
AGGGACCCCTCACACAATATGTAATGTGAAGAGATCAGGGACATG
Right flanking sequence: Indices 261867 -- 262366
AATATGGGAATCTTAATCAATATAGAATCTTTTCAAGATTCAAAAACTAGTTTGTTCAAAATAAC
TAAACCAAGACATATACCATGCAAATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGA
AGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATGGGTTTCTATCTACTATAGCATAG
ATCGGCCTGCTATTCCCTTTCAATGCCATATAGTGGCCATATCCTATTCTAAGATAGAGAACGAT
CCGAGCCAATAAGGATCCGGGAAAGGACCCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACC
TTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCA
CGTGATTGAGATGACACTATTAAGGGATCCGGTAACCGGACTGGATTGGGAATCCTAATAAGATA
GGGTGGATGTGGCAATAGGATGGGCACTGCTCTATACTATATAGG
Found at i:262194 original size:32 final size:32
Alignment explanation
Indices: 262158--262249 Score: 184
Period size: 32 Copynumber: 2.9 Consensus size: 32
262148 AAAGGACCCC
262158 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
262190 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
262222 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
262250 TTTACCACGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 261658 -- 262157
AGAGTGCTGCAGATGCGAAGCTTTCGGTCTGAAGATAAAGCTTGGGACCAGTAACGGAAGAAGAG
CTTCTAAATGCCTAACTCCGGGAATATCCGGGTCTATATAGTAGTGGACAATAGGGACCCCTCAC
ACAATATGTAATGTGAAGAGATCAGGGACATGTTCATCAATATGGGAATCTTCATAAATAGGAGA
ATCTTCATCAATAGAATATGGGAATCTTAATCAATATAGAATCTTTTCAAGATTCAAAAACTAGT
TTGTTCAAAATAACTAAACCAAGACATATACCATGCAAATGCTCTTGAAGAAAGAAGATAGGGTG
GATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATGGGTTTCTAT
CTACTATAGCATAGATCGGCCTGCTATTCCCTTTCAATGCCATATAGTGGCCATATCCTATTCTA
AGATAGAGAACGATCCGAGCCAATAAGGATCCGGGAAAGGACCCC
Right flanking sequence: Indices 262250 -- 262749
TTTACCACGTGATTGAGATGACACTATTAAGGGATCCGGTAACCGGACTGGATTGGGAATCCTAA
TAAGATAGGGTGGATGTGGCAATAGGATGGGCACTGCTCTATACTATATAGGCTGCACCCACAAG
GAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCGTAAGGTTATCCCTTTCCTG
AGTGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTTGCACACTGCACCCCAGGCC
ACGGGCCATCACTGTGCTGGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCC
TTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCT
TCGCTACGCTCAGGAACAGTGGGGATCTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTC
CCTTCGCTACGCTCAGGAACAGTGGGGATCTCCTTCCCTTCGCTA
Found at i:262577 original size:32 final size:32
Alignment explanation
Indices: 262536--262999 Score: 514
Period size: 32 Copynumber: 13.5 Consensus size: 32
262526 CTGGCCGGCC
262536 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
262568 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
262600 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
**
262632 CCTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCT
1 CCTTCCCTTCGCTACGCTCAGGAA-A---GGGATAA
262668 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
**
262700 CCTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCT
1 CCTTCCCTTCGCTACGCTCAGGAA-A---GGGATAA
262736 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
* ** ** *
262768 CCTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATC
1 CCTTCCCTTCGCTACGC----T--CAGGAA-AG-G-GATA-A
262810 CCCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CC-TTCCCTTCGCTACGCTCAGGAAAGGGATAA
262843 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
262875 CCTTCCCTTCGCTACACTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
* *
262907 CCTTGGATCAGGCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CC-T---T----CCCTTCGCTACG-----CTCAGGAAAGGGATAA
262952 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
262984 CCTTCCCTTTGCTACG
1 CCTTCCCTTCGCTACG
263000 AGGGTTAACC
Statistics
Matches: 373, Mismatches: 27, Indels: 64
0.80 0.06 0.14
Matches are distributed among these distances:
32 233 0.62
33 5 0.01
34 2 0.01
35 3 0.01
36 62 0.17
37 13 0.03
38 3 0.01
39 3 0.01
40 10 0.03
41 3 0.01
42 2 0.01
43 15 0.04
44 1 0.00
45 18 0.05
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 262036 -- 262535
ATGGGTTTCTATCTACTATAGCATAGATCGGCCTGCTATTCCCTTTCAATGCCATATAGTGGCCA
TATCCTATTCTAAGATAGAGAACGATCCGAGCCAATAAGGATCCGGGAAAGGACCCCCCTTCCCT
TCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTT
CGCTACGCTCAGGAAAGGGTTTACCACGTGATTGAGATGACACTATTAAGGGATCCGGTAACCGG
ACTGGATTGGGAATCCTAATAAGATAGGGTGGATGTGGCAATAGGATGGGCACTGCTCTATACTA
TATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCG
TAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTT
GCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCC
Right flanking sequence: Indices 263000 -- 263499
AGGGTTAACCTACGGGGCATGGCTATGGCATTGAGCCTACGGTATAGACGGAGCATTCAGGCCAG
GCCTACAACTATGTTATTATAGAATTGCGGAGCCTCTATTAGGCCCAAAAGAGTTCGGATCCATC
TAAGTTCAGGGAATATCTATAGCATAGAAGAGCTCGGATCCATCTAAGACAAATCAAGATAGAAG
CAATAGAATACTCTAGAGCCTACAACAGAGATCTAGCACTAATCACATCCCTATGAATTAGGATG
TTCCCTATGCATTAGAATCATCACCTGATGGCTATTGAATATTCACATTGATTAGGATCAAGGAT
CTAATCGCTATGGCTATTCACATATTCACATTGATTAAGGTAGTGTCCAAGCATTGATTAGATCA
GGCCTATAACTATGTTAGAATCATCACCGGATGGCTATTGAATATTTCTTTCTTAGGATCAAGGA
TCTAATCGCTAATGAATCTTCTTAGTATTGATTAAGATCAGGCCT
Found at i:262702 original size:68 final size:68
Alignment explanation
Indices: 262536--262999 Score: 552
Period size: 68 Copynumber: 6.7 Consensus size: 68
262526 CTGGCCGGCC
262536 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAA-A---GGGA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
*
262597 TAA
66 TCA
262600 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
*
262665 TCT
66 TCA
262668 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
*
262733 TCT
66 TCA
** *
262736 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGAGTAAAACTAATAG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAG--GAAC----AG
*
262801 TGTGGGATCC
60 TG-GGGATCA
262811 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAA-A---GGGA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
*
262872 TAA
66 TCA
* * * * **
262875 CCTTCCCTTCGCTACACTCAGGAAAGGGATAACCTTGGATCAGGCCCTTCCCTTCGCT-ACGCTC
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACC-T---T----CCCTTCGCTACGCTCAGGAAC
*
262939 AG-GAAAGGGATAA
58 AGTG---GGGATCA
*
262952 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTTGCTACG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACG
263000 AGGGTTAACC
Statistics
Matches: 354, Mismatches: 21, Indels: 45
0.84 0.05 0.11
Matches are distributed among these distances:
64 94 0.27
65 2 0.01
68 126 0.36
69 9 0.03
70 3 0.01
71 2 0.01
72 13 0.04
73 3 0.01
74 4 0.01
75 57 0.16
76 1 0.00
77 40 0.11
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (68 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
TCA
Left flanking sequence: Indices 262036 -- 262535
ATGGGTTTCTATCTACTATAGCATAGATCGGCCTGCTATTCCCTTTCAATGCCATATAGTGGCCA
TATCCTATTCTAAGATAGAGAACGATCCGAGCCAATAAGGATCCGGGAAAGGACCCCCCTTCCCT
TCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTT
CGCTACGCTCAGGAAAGGGTTTACCACGTGATTGAGATGACACTATTAAGGGATCCGGTAACCGG
ACTGGATTGGGAATCCTAATAAGATAGGGTGGATGTGGCAATAGGATGGGCACTGCTCTATACTA
TATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCG
TAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTT
GCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCC
Right flanking sequence: Indices 263000 -- 263499
AGGGTTAACCTACGGGGCATGGCTATGGCATTGAGCCTACGGTATAGACGGAGCATTCAGGCCAG
GCCTACAACTATGTTATTATAGAATTGCGGAGCCTCTATTAGGCCCAAAAGAGTTCGGATCCATC
TAAGTTCAGGGAATATCTATAGCATAGAAGAGCTCGGATCCATCTAAGACAAATCAAGATAGAAG
CAATAGAATACTCTAGAGCCTACAACAGAGATCTAGCACTAATCACATCCCTATGAATTAGGATG
TTCCCTATGCATTAGAATCATCACCTGATGGCTATTGAATATTCACATTGATTAGGATCAAGGAT
CTAATCGCTATGGCTATTCACATATTCACATTGATTAAGGTAGTGTCCAAGCATTGATTAGATCA
GGCCTATAACTATGTTAGAATCATCACCGGATGGCTATTGAATATTTCTTTCTTAGGATCAAGGA
TCTAATCGCTAATGAATCTTCTTAGTATTGATTAAGATCAGGCCT
Found at i:262965 original size:109 final size:107
Alignment explanation
Indices: 262700--262998 Score: 402
Period size: 109 Copynumber: 2.7 Consensus size: 107
262690 AAAGGGATAA
**
262700 CCTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCTCCTTCCCTTCGCTACGCTCAGGAAAGGGA
1 CCTTCCCTTCGCTACGCTCAGGAA-A---GGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGA
* * * ***
262765 TAACCTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCC
62 TAACCTTCCCTTCGCTACACGCAGTAAAACGAATAACCTGGGATCC
262811 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAAC
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAAC
* * * * *
262876 CTTCCCTTCGCTACACTCAG-GAAAGGGATAACCTTGGATCAGGC
66 CTTCCCTTCGCTACACGCAGTAAAACGAATAACCTGGGATC---C
262920 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAAC
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAAC
*
262985 CTTCCCTTTGCTAC
66 CTTCCCTTCGCTAC
262999 GAGGGTTAAC
Statistics
Matches: 171, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
106 12 0.07
107 55 0.32
109 79 0.46
110 1 0.01
111 24 0.14
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (107 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAAC
CTTCCCTTCGCTACACGCAGTAAAACGAATAACCTGGGATCC
Left flanking sequence: Indices 262200 -- 262699
GCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCACGTGATTG
AGATGACACTATTAAGGGATCCGGTAACCGGACTGGATTGGGAATCCTAATAAGATAGGGTGGAT
GTGGCAATAGGATGGGCACTGCTCTATACTATATAGGCTGCACCCACAAGGAGATACAAGCAATA
TATCCAGGTTAACCCATAGTTTTACTCCGCGTAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGA
AGGCACGGGCCACTCTTCTTATTATGGGGTTGCACACTGCACCCCAGGCCACGGGCCATCACTGT
GCTGGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGG
AAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGA
ACAGTGGGGATCTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Right flanking sequence: Indices 262999 -- 263498
GAGGGTTAACCTACGGGGCATGGCTATGGCATTGAGCCTACGGTATAGACGGAGCATTCAGGCCA
GGCCTACAACTATGTTATTATAGAATTGCGGAGCCTCTATTAGGCCCAAAAGAGTTCGGATCCAT
CTAAGTTCAGGGAATATCTATAGCATAGAAGAGCTCGGATCCATCTAAGACAAATCAAGATAGAA
GCAATAGAATACTCTAGAGCCTACAACAGAGATCTAGCACTAATCACATCCCTATGAATTAGGAT
GTTCCCTATGCATTAGAATCATCACCTGATGGCTATTGAATATTCACATTGATTAGGATCAAGGA
TCTAATCGCTATGGCTATTCACATATTCACATTGATTAAGGTAGTGTCCAAGCATTGATTAGATC
AGGCCTATAACTATGTTAGAATCATCACCGGATGGCTATTGAATATTTCTTTCTTAGGATCAAGG
ATCTAATCGCTAATGAATCTTCTTAGTATTGATTAAGATCAGGCC
Found at i:262972 original size:77 final size:77
Alignment explanation
Indices: 262843--262987 Score: 281
Period size: 77 Copynumber: 1.9 Consensus size: 77
262833 AAAGGGATAA
262843 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAAC
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAAC
262908 CTTGGATCAGGC
66 CTTGGATCAGGC
*
262920 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAAC
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAAC
262985 CTT
66 CTT
262988 CCCTTTGCTA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 67 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (77 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAAC
CTTGGATCAGGC
Left flanking sequence: Indices 262343 -- 262842
GGGCACTGCTCTATACTATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAAC
CCATAGTTTTACTCCGCGTAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCAC
TCTTCTTATTATGGGGTTGCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCCCC
TTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCT
TCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCT
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
TCTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGAGTAAAACTAA
TAGTGTGGGATCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Right flanking sequence: Indices 262988 -- 263487
CCCTTTGCTACGAGGGTTAACCTACGGGGCATGGCTATGGCATTGAGCCTACGGTATAGACGGAG
CATTCAGGCCAGGCCTACAACTATGTTATTATAGAATTGCGGAGCCTCTATTAGGCCCAAAAGAG
TTCGGATCCATCTAAGTTCAGGGAATATCTATAGCATAGAAGAGCTCGGATCCATCTAAGACAAA
TCAAGATAGAAGCAATAGAATACTCTAGAGCCTACAACAGAGATCTAGCACTAATCACATCCCTA
TGAATTAGGATGTTCCCTATGCATTAGAATCATCACCTGATGGCTATTGAATATTCACATTGATT
AGGATCAAGGATCTAATCGCTATGGCTATTCACATATTCACATTGATTAAGGTAGTGTCCAAGCA
TTGATTAGATCAGGCCTATAACTATGTTAGAATCATCACCGGATGGCTATTGAATATTTCTTTCT
TAGGATCAAGGATCTAATCGCTAATGAATCTTCTTAGTATTGATT
Found at i:268529 original size:20 final size:20
Alignment explanation
Indices: 268506--268544 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
268496 AGAACACTCC
*
268506 CGATCCGCTCCGATCACTAT
1 CGATCCACTCCGATCACTAT
*
268526 CGATTCACTCCGATCACTA
1 CGATCCACTCCGATCACTA
268545 CCCATCTCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.38, G:0.13, T:0.26
Consensus pattern (20 bp):
CGATCCACTCCGATCACTAT
Left flanking sequence: Indices 268006 -- 268505
TGCGAAAATCCCTTATCCCCCTTATTATGAAGTGGTTCCCATGGGAGGGGTGGCGTTTTCGTTAC
GTTATATTATATATATAATATCCTTCCCCCTTGATTCGAATTCCCAGCCCTTCCCCAAATAAGGA
CAAGCGCGCCCTTCAATGAAGGAATAAGTAGCAGGAGACTGCAGAACATAGAAGGGGCTTCTCTT
AGCCACTTGCCGAAGAAGCTGCAGCACGATAAAGAATGCCCGCAGCAGCCCGATCAAAGCACGTC
TAGGGTCGGGAGCAAGCTGCTGCGCCGTCCTGGCCGGGAGTTGTGGGAAGGGACGTATTCCTGTA
TAACGATAGTGGGATCTCATTGGCCTAATTCTTCCACATCATGTCCGCCCGGTCAATCTTATTAA
TGCTCCTTTTCCTCGATCATATCAACAGCTTGCTTGCTCGTTCGCTCGCCGCTTAGACCTGCTCG
GTCGCATCTATCTATCTGCTCGCGAGCAGATATCTAGAACACTCC
Right flanking sequence: Indices 268545 -- 269044
CCCATCTCACTCCTATTCCTCTCCACCAGAACGGACTACCGATAGAAATTGACTAGGGAGTGAGG
AGCAAGGATAGTGAAACATCTCTCCGAAATAAGCTTTCTATAAAAGATGCACACTGTGTAATTTG
ACCTCCCAATGAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGAAAGGTTAGTCAAAATCA
ATCAGTGGTGTAACAATCCTATCTTAATTGGTTACATATCAATGAAATGATACGGAAATCGGGGC
CGGAGCGAAATGAAGAGGAAAGACGGGTCTTATTCATTGATCGAATAGGGCTTCGCCCTCTTTGC
TTTAGGGGGGTGAAGGAAAGTAACCTTGTTTTTGGGGAGAGAGGAGCCACTATTTGGTTAAGTTG
GCGGCTGCCCCCAACTCACTTTGGTGCAAAAATCCGTAGAATGATAAGGTTGGTGGTTCAGCCCA
CTCTATCCCTCACCTTTCCTTTCCGGCTCGGCGGCCCCCGGATTA
Done.