Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_008332
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 680603
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:10936 original size:21 final size:21
Alignment explanation
Indices: 10883--10937 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
10873 ATCGTCACTA
** *
10883 TCTTCTTCACTCCCACTACCT
1 TCTTCTTCACAGCCACCACCT
10904 TCTTCTTCACAGCCACCACCT
1 TCTTCTTCACAGCCACCACCT
*
10925 TCTTCTTTACAGC
1 TCTTCTTCACAGC
10938 TACTATCCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.44, G:0.04, T:0.36
Consensus pattern (21 bp):
TCTTCTTCACAGCCACCACCT
Left flanking sequence: Indices 10383 -- 10882
GATCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTG
TAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT
ATGGAGGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCAGCTCTTGAAGTTCC
ATCTCTTAATGGATAAGGTTTTTATCCTAAACATATAGGAAGGAAAGCCGGGTTCTTTTATGAGG
AAGAAGCAGTGCACGATTGTGCACCAATGCGCCATAAGAGCTAGCTTTGCAAAAAGGAATTCTAT
TTCCACTCAAGACAAAAAGGTTATCCCTTTACCGCCAAGTATGAACTGAAACTCTTATTTCTGGT
TTTCACAATAAATATAGAATTACCTAGAACAATACCAGACGTATAATAACACACCTACAAGGACA
ACCACACCGAATGCCAGGTATCTAGGATTGTCACTATCGTCACTA
Right flanking sequence: Indices 10938 -- 11437
TACTATCCACCCCCTCTTTACAGGCACTACCTTCTTTACTGCTAGCATATTCTATAGTGGCATTC
TCCTCTACAGAATCTATGGTATGATCACCATCAGAGCATTTCCCCCAGAATTCGAATTTATCCGA
CAATTCCTCTTCTCTCAACTTTCTATCCAAGCAATCCGTTAAAGCCGTCCTTTCCACAACCGCAT
CATAAGCTTCTAAGATTGATGTACTAATCACTTCCTCGTATGGAATCCATACGAATAATTTACGA
ACTTTGAATAAATCAATAATCAATTCTATATCAAGATAGTGCGGGTCCACAGATATGAAATCTGG
TGCGCTCTCAGTATAACAGTACCACACTGTTACATAAGTACCTAATCTAACTAGTGCAAAGATGT
TCCCATAGACATACCTAACACTGTTGTCTGATTGTGATGTCACCACGTGTACTAAACATTGCAAT
ACTTTATGTTTTGCAGAAACACCGAAGTTTTCATACTTTTCTAAT
Found at i:29700 original size:23 final size:22
Alignment explanation
Indices: 29651--29702 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
29641 ACTTTAGCTT
*
29651 TAGAATGAGGAACGTATCGTATA
1 TAGAATGAGGAACGTA-CGAATA
29674 TAGAATGAGGAACGTA-GAATTA
1 TAGAATGAGGAACGTACGAA-TA
29696 CTAGAAT
1 -TAGAAT
29703 AGAAAGGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 2 0.08
22 2 0.08
23 22 0.85
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (22 bp):
TAGAATGAGGAACGTACGAATA
Left flanking sequence: Indices 29151 -- 29650
CTATATTCCTCCAAGAGGGAGGGGAAGAGCCCGAGTCAAAGTTCTTTGTTGACCAATCAAAGAGA
ATGAAAGAAATATAGAAAGAATGGATTAGTGTCAACTCCATGAATCGGTACAGGTAGAAGTAGAG
GGGGCATGCCAAAAAGAATTTGAGAAGCCTCGTTTCTGAGCTTTTACAGCATCTTTTGATTCAGA
AGCATCTCCCACGAAATCACATAACATAAGTGATCCTGCGGAACCGGCTTTCCTACACTCACTGA
TCCATTCAAAGGATTTTATTTTCTCACGACTGATCCGCACTTCAGCTCCGATATTAATAAGCACT
GCCTTCTAGCCAGTCTAGTCCCGGAGACATTATACTCTGGGTCTGGCATCGCCTCGCAAGATCAT
CTAGTCTAGATTTACTCGGGTGTGCCCGATTTCCATGATCCCTATTTCATAGCTTGGCTTGGGTT
GAAGGTGAAGTCTTTATATTCTAGTTAGAGTCACTACTTTAGCTT
Right flanking sequence: Indices 29703 -- 30202
AGAAAGGCGAATAGAAAGACTAGTTACTCGCTCTAAAGTATTATACGTGAACTATTCTCACAGAG
GAATGAAGGGAGCTGGAACCAGGCTGCCCAGGAAGGATTTCTGAGCTCTACTCTAGTATTGACTG
GCTTTCAAGGAATGGAGCTGCCTATATAAATAGAAAAAGCTTTGCCCCGCACCCTAGCGAGAATT
TCATTTCTTTAAGTAAGCTGCTAGGTCTTATTTGATGAAAAGCAAGACAATCCACCATGGATCGG
AGGGGGCTATATACGAAACTGAGGAGCTCTTACCTCTATTTATGATAATAGAATAGCTTTGGGTG
GCTTCACTTATCTGATAGCCAATGAGTCACTATTCCAATCACCGCCCCTCGCTCGTGCCCATCCA
TTAACGGAACGGACTTACCGTTACTAAGCTCGTAAAGAGGAGGGCTATCTTTCTTTGAGGTTGCG
TATGATTCTTAATTTGAAATGAATGAATCTGTTCATAAGATTTGG
Found at i:34141 original size:5 final size:5
Alignment explanation
Indices: 34131--34155 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
34121 ATCGCCTATA
34131 TAAGT TAAGT TAAGT TAAGT TAAGT
1 TAAGT TAAGT TAAGT TAAGT TAAGT
34156 ATGGAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TAAGT
Left flanking sequence: Indices 33631 -- 34130
AAAATCTCCTATCATCCAAAAACAAGGGGTTTCTTACTTCGGGTGGCCAGTCTGCTTTCAAGACA
GTTTCCTCTGCATAGGTTGAGGGGTTAGTCTTCTTGCTTGAAAGGCGGGGTATCTAATTTCGAAT
AGAGTTTCCTTGCTTGCCGCCTAGCTGATCTTGAAGATTGTGGAAGACTCCTACTGCCATCTAAT
GGTTCTTACCAAATCCCACTGTCCTTCTTTTGGGGTGCCGGGCTATCTACTATGGTATGCAAGAA
ATCAGCCATCTCTTCTATTGGAACCTTATGGTGACTATTTGCTCGCTCGGAAGTAGATCTGGATC
TGGATATTTACTATTAGTATCTCTCTTTCTGGAGTGCCGTTCTAAGGTTTCTCTTGACTCAAGAA
TAGTAGGTGCGGGTCTAGTAGACGTAGACAGACAGTGGCATGATTCATATTCCGGACTTTCATAT
TCCTCTACCTAAGATAGATCCGCGCTCGGTGCGCTATCGCCTATA
Right flanking sequence: Indices 34156 -- 34655
ATGGAAATTGGGAACTCTTTATAGGAGTGAGTTGCTCATCGGAAACTCAAAGTCAGCAAGCAGTT
CTTGGATTGGCCCGAGAAATCTCCATTTGCTAGTGCTCGTCCCACCATCAGCCTCATAGCATTGA
AAGGACAGGATGGCATCGATTCCATTCAAAACTGGAAGTGAAACAAAGTCAAGTAGTCACAGACC
CATTTATTCTTTTTTTGTCATTGGATTGGATACGTTACAGGGTTCGTTCACGACCCACACTCGAG
ACTGTTCATTTCATTTCCATATTCAATAGCAAGCACACTGTTAAGGCTCATCTTTATGCGGGTTC
TAAGCTAAGCTGGCACAGAAAAATTCTTGGATTATGGACACGCTACTGATCCTCATTGATCGACT
CGGGCCTGCCCCTATATATGTATTTATTTGATCAGGGCCTATTCCCACTATCACAACAAAAATAG
AATTCCCCGGGTGTCTACGGAGCTCACTTCTGAGATAGAGCTGGC
Found at i:67224 original size:22 final size:22
Alignment explanation
Indices: 67199--67242 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
67189 CTTACTCGGC
67199 ATCTACTGAACATCACTTCTAT
1 ATCTACTGAACATCACTTCTAT
67221 ATCTACTGAACATCACTTCTAT
1 ATCTACTGAACATCACTTCTAT
67243 GCTGATCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (22 bp):
ATCTACTGAACATCACTTCTAT
Left flanking sequence: Indices 66699 -- 67198
GAGAATAATCAAATAGCGAAGGCCAAATAGAGAGTAAAGGAAAACAATGTGCTAACAGAAGCACA
GGGAAAAGCATTCACAGATAGCCCAGAACATAGGCATTGAGTCTAGTAAATAAAGTAGTGGAAAC
GGGCTAGCCAAAAGAAGGTACTAGTAAAGATCAGTCACACGGGATTCGTTTTTCATAGACGAATA
GGCTTTCGAGAGCAAAGGCCTTCCTTGGGCAAACTAGTTTCTCAATCAATGCTTATTCGCTTATT
TGTCACAATAACATACAACACGTTAACCGAGTACTAATAACGTAATTCCGTATCCTTGTTGTTCA
AGGAATAAAAGGAAGAAGATCTTAAACAAAATCCACAACTAAAGATAGTACTACTAGGCAGACAG
GGACCCGCCTGACTATTTCGTTTTCTTCACAGAAAAGATGGGATAAGCTTTTGAATTCAAGCGCA
GGGAGAACTACCAACAAGCACTTCAGAAACTCCAACTTACTCGGC
Right flanking sequence: Indices 67243 -- 67742
GCTGATCTTTCCTCTCTACCTATACAACTGAAGTTTCCAGCTTTCCAGCAAGGTATTGGGATAGT
TCACTCAGATTTTGAGATGGTTTTTGGGCAAGTGTTTAAAGACGGAACCTGGCCCAGTGTGACTT
CAGGTAAAGTATGGCTGCCTTGTAGGACAGGAGTTTACTTAGCTGCATGCATTCATTGCAGACCT
GGCTGCAAGCATCCATAGATAGCTGCCGAAGGTACTTGTCTTATCACTCTTTGGCAATCGAATTG
ACAGTGCATGTGTGGAAAAGAGAGCTAGTGGATTCCTTCTCGTTGTTTAGTCTGGAAATACACCA
ATAGCAACACAGAATGCTATTACGATACCTAAACTAACCCCTACTCTCCATTTTCTGTCTATATT
ATCCATAGGTATTTGTATTGCTGGTTCCTCTGGTGGTATGACCTCTTTCAACATAGCCATATTGT
TAAAACTATTCTCATCAAAGGTAAAAGGAGTATCTCCCCGGATTG
Found at i:68347 original size:15 final size:15
Alignment explanation
Indices: 68327--68360 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
68317 ATATACGGGC
*
68327 CATTAGAGAAAATCT
1 CATTAGAGAAAATAT
*
68342 CATTAGAGATAATAT
1 CATTAGAGAAAATAT
68357 CATT
1 CATT
68361 TGATCTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (15 bp):
CATTAGAGAAAATAT
Left flanking sequence: Indices 67827 -- 68326
AATCCCACGACATATAAAGCAGTTGATCTGGTTGAATATCTATATTACAAGGTATAAACTTGTAC
CAAACTGTAGTGTAAAAACCAACTCTGACAAGTGCGAAAATACTACCATATACAGTATTGATTCC
TCCATCCATAGATGATTGATATAGTTGTCATTTTTATCAAACAATTGGTTAAATTATTGGATATG
AAAAAATATTTCTTTGATAATGCACTTTTATAGGCTGGCCATAACACTGTTTCTAACCACTTATT
ACCATCATCTATCCCGGGTGTAAATTGTTTTAAAGATAGCAAATCTTTCCAAGAATCAAACTTCC
ATTTATTTAATGTTGCGTTAAAACTGACAATAGGAGATGTCCAAAGATAATTTGCACCCAGGATC
ATAAACTTCATATGATATTTGATGAATGAAATCTTTATTAGTTAATGAATCCATATATAACTTAC
TATGATATGCTAGTTGATCATTTAACGATTTGAATATATACGGGC
Right flanking sequence: Indices 68361 -- 68860
TGATCTATTAGAAATACTATTATTAGATAATAACTTCTTATATAAACCCACTACTTTCCACAATA
ATGTTCTATTTACAGATTCCACTGATGTACTACATTCAATATCCGGTACTTGGAATATATTAGAT
ACACCTCTCTTGTCAAATACAAACTTTTCGAACTTACAATACAAATCCCTCATACGGTTGAAATC
GGTTGTCATGATTGCTATACTTTATTAAATTAATATTTGAAGGTTGGTGGGGATTTCCATTTTTT
AGAGTTGAAACTCCTACCCTAGTGCTCAATACTGTAGTGGTAGAGAGCTATTTTATCCCTAGTAT
ACTTTGTACGTACGGCTAGAGATTGAAGGGAATCAACTTAGTAAGCATATGCCTACTTTCTATGT
GAGTTAATCACGTGAACAGATAGTATCAACAGAGAAGTCACATAAGCACCTTCCAATCGAACTTC
TTTTGCTAATTAACAAGAGACCAGACAATACAATAGCTCTTTTCA
Found at i:68930 original size:17 final size:17
Alignment explanation
Indices: 68905--68978 Score: 67
Period size: 17 Copynumber: 3.9 Consensus size: 17
68895 CTATAATACT
*
68905 TATATGCAGAGAAACCC
1 TATACGCAGAGAAACCC
68922 TATACGCAGAGAAACCCTTTC
1 TATACGCAGAGAAA-CC---C
*
68943 TTACTTATGCAGAGAAACCC
1 -TA--TACGCAGAGAAACCC
68963 TATACGCAGAGAAACC
1 TATACGCAGAGAAACC
68979 TTCTCTTACT
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
17 26 0.55
18 2 0.04
19 2 0.04
20 1 0.02
21 1 0.02
22 2 0.04
23 2 0.04
24 11 0.23
ACGTcount: A:0.38, C:0.26, G:0.16, T:0.20
Consensus pattern (17 bp):
TATACGCAGAGAAACCC
Left flanking sequence: Indices 68405 -- 68904
AACCCACTACTTTCCACAATAATGTTCTATTTACAGATTCCACTGATGTACTACATTCAATATCC
GGTACTTGGAATATATTAGATACACCTCTCTTGTCAAATACAAACTTTTCGAACTTACAATACAA
ATCCCTCATACGGTTGAAATCGGTTGTCATGATTGCTATACTTTATTAAATTAATATTTGAAGGT
TGGTGGGGATTTCCATTTTTTAGAGTTGAAACTCCTACCCTAGTGCTCAATACTGTAGTGGTAGA
GAGCTATTTTATCCCTAGTATACTTTGTACGTACGGCTAGAGATTGAAGGGAATCAACTTAGTAA
GCATATGCCTACTTTCTATGTGAGTTAATCACGTGAACAGATAGTATCAACAGAGAAGTCACATA
AGCACCTTCCAATCGAACTTCTTTTGCTAATTAACAAGAGACCAGACAATACAATAGCTCTTTTC
ATTTCCTATAATATAATACTGTACTTTATACGCTCCTATAATACT
Right flanking sequence: Indices 68979 -- 69478
TTCTCTTACTCGAAACCCTCTCTTCCCCGAAGACAGTCTTCCTCGCCAACCCATAGATAGGCGCT
TTCCTATATTATATATATGGATTCGTTCCCGGAGCCAGAGCGGATTCCATGAATTGACGTATATG
CTATGAGCGTAGTTATCAATCAGGTACGCCGGTAGCAAGATTCCATCCCATCCCTGAGGATAGTG
ATTTCTGGTATAGAGTATTTATAGAAAACTCGTATCAAAAATATCATACCAAAAAGAAAGAAGAG
ATAAATGAGCCTTGTTTCCCGAGAGAGACCGCCATCTCTCAGGACTGCAGTCTTATAGTCGACAG
CTCTATGTGGAGTTTTACAAGCCACCACTCTGGACCGTGGTCTTAGCTCTCACACCGAGAAAGCC
TGCCTTCCCCCCAGAAGAAAGTCTTTCTCTCCCTCGTTTCGTTGTTAAAGAGAAAACAATTGGAT
GCTAGTTTGAGGTGAGACTAGTATCTCAAGTAACTCAAAATATCT
Found at i:68960 original size:41 final size:41
Alignment explanation
Indices: 68907--68988 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
68897 ATAATACTTA
68907 TATGCAGAGAAACCCTATACGCAGAGAAACCCTT-TCTTACT
1 TATGCAGAGAAACCCTATACGCAGAGAAA-CCTTCTCTTACT
68948 TATGCAGAGAAACCCTATACGCAGAGAAACCTTCTCTTACT
1 TATGCAGAGAAACCCTATACGCAGAGAAACCTTCTCTTACT
68989 CGAAACCCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 4 0.10
41 36 0.90
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (41 bp):
TATGCAGAGAAACCCTATACGCAGAGAAACCTTCTCTTACT
Left flanking sequence: Indices 68407 -- 68906
CCCACTACTTTCCACAATAATGTTCTATTTACAGATTCCACTGATGTACTACATTCAATATCCGG
TACTTGGAATATATTAGATACACCTCTCTTGTCAAATACAAACTTTTCGAACTTACAATACAAAT
CCCTCATACGGTTGAAATCGGTTGTCATGATTGCTATACTTTATTAAATTAATATTTGAAGGTTG
GTGGGGATTTCCATTTTTTAGAGTTGAAACTCCTACCCTAGTGCTCAATACTGTAGTGGTAGAGA
GCTATTTTATCCCTAGTATACTTTGTACGTACGGCTAGAGATTGAAGGGAATCAACTTAGTAAGC
ATATGCCTACTTTCTATGTGAGTTAATCACGTGAACAGATAGTATCAACAGAGAAGTCACATAAG
CACCTTCCAATCGAACTTCTTTTGCTAATTAACAAGAGACCAGACAATACAATAGCTCTTTTCAT
TTCCTATAATATAATACTGTACTTTATACGCTCCTATAATACTTA
Right flanking sequence: Indices 68989 -- 69488
CGAAACCCTCTCTTCCCCGAAGACAGTCTTCCTCGCCAACCCATAGATAGGCGCTTTCCTATATT
ATATATATGGATTCGTTCCCGGAGCCAGAGCGGATTCCATGAATTGACGTATATGCTATGAGCGT
AGTTATCAATCAGGTACGCCGGTAGCAAGATTCCATCCCATCCCTGAGGATAGTGATTTCTGGTA
TAGAGTATTTATAGAAAACTCGTATCAAAAATATCATACCAAAAAGAAAGAAGAGATAAATGAGC
CTTGTTTCCCGAGAGAGACCGCCATCTCTCAGGACTGCAGTCTTATAGTCGACAGCTCTATGTGG
AGTTTTACAAGCCACCACTCTGGACCGTGGTCTTAGCTCTCACACCGAGAAAGCCTGCCTTCCCC
CCAGAAGAAAGTCTTTCTCTCCCTCGTTTCGTTGTTAAAGAGAAAACAATTGGATGCTAGTTTGA
GGTGAGACTAGTATCTCAAGTAACTCAAAATATCTCTGCTCAGTA
Found at i:77323 original size:5 final size:5
Alignment explanation
Indices: 77313--77347 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
77303 TGTAATTTAC
77313 TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT
77348 ATAGTAGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Left flanking sequence: Indices 76813 -- 77312
TGATTAAGTTACATTACCTGCTGCACCGAGCATTGATTTGAACGAATTAATTACCAGACTTATTG
GGGAGTGTGTACGACTTAGTGGAGTGTTTCCTTTTTAATAGAATCAGAGCAGAGGATTGAATCGC
ATGAATGGGTTGAGCATTTTAATAGATATACCCTTTTTCTTAGGCATCGATTCTAGGATTGAAGA
AAGGGGAGATTTCCCACACTTTGAAAGATTCACCTATTGGGTGGGGCGTGTTTGAATTACCTACC
CGGGATTTTTCATATTAACTGTAGCTAGGGAATTGACTGACTCTGATTAATATCTTTGTCTAGCA
TTTCCAAATTGCCTCAAGACTGATACAGATTTTACGGAGTTAATTACCACAGGGCGGCTTGCCCT
AAGAGTATAGTTAAGTGGGTCAATTCCCAGAACAGACAGGGTTTAGTCAGTTCATTGACTAGTAA
ATGACTTGATCCACTCATTAGCATTGAGTGTTGTCTGTAATTTAC
Right flanking sequence: Indices 77348 -- 77847
ATAGTAGTAATGATGAGCACTTTTACCAGAAAGAGTTGACTGAGTTAATGGAATGGATTCGCTTG
TTGGCTAATCTGAATCGACTTACTTAAGTGTGGTGTTACCAGGCTTGGAAAGAAAACTTCTTTAT
GTGTTTGATTTCCCTAATTTACTGGTACTCAAATACCTGCCAAGCATTCCCAATCTCAGTTTTTG
TCACACAATAAGATCCAATTTGTTTAGACTCGTTAGGTTTGGTCACCCATTACCTTGAGTGAGGC
CAAAGGTGTACACCTATTGTCATGAAGATGTGATCATATCCACCGAAAGGTCTTGTTCTAAGCCC
AATCCTCTCGTCTTAGGTCCATAAACCAACAATAACGGGAGCTTCTCCTTTTTGGTTGACAACCT
ATGTTGGTCTGACTAAGCCCACTATCCTAATGGGAGGGTCCCACCTTGTGTCGGGGTAAGGCTCC
ACCTCATCTTGGGTTAAGGGCGAAGCTTGAAGCCAATTTCTTCAC
Found at i:78880 original size:18 final size:18
Alignment explanation
Indices: 78859--78896 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
78849 TCGAGGTGTC
*
78859 GACGGAGCTAACTTGTGA
1 GACGGAGCTAACTTCTGA
*
78877 GACGGAGCTCACTTCTGA
1 GACGGAGCTAACTTCTGA
78895 GA
1 GA
78897 TAGAGCTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (18 bp):
GACGGAGCTAACTTCTGA
Left flanking sequence: Indices 78359 -- 78858
GAGACCGGTGCTAAAACCTTTTCTCGAGATATCTTCCAAATTATTAGGGTCCTTGCTCCGGATCT
TGTTCCCCCGGTGCGAAAGCAGTTGGTTCCGTAGTTTGAGAATTCTGCTAATTCCAAGTATTCCA
TTATTATTATTATAAAAGAGAATATAAAAAGTAAAGAGGAGAAGGCATAACCAGAAGAATTGTGA
GAAATAAGTCAATTTATCAAGTTGAGGCATTTCGATTTCCAATCAAACCAACCCTCAAGACAGAA
AAAGACTCCCTCCCAAAATAACCAAAAATACTAGTTGCCTTCTAACGCATAGACTAGAGCGTTTG
TCCCATCCTTATCTAGTGGGCCAATGACATTACTATTCTACGCGTTTTCTGAGGAGCAACATGAG
AGATAGACTTGACACCGACCCACGAAAACGAAACTTTTTAGTCTAGAAAGATTCCCAACCCGATA
TTGAGATCTGATGACTGAACACTCGTTTGAATAGCTCGAGGTGTC
Right flanking sequence: Indices 78897 -- 79396
TAGAGCTGTCTTCTTTCTCTTGGTTTCCATCCTTCCGTTACGAGATATCGTTTCGTACAATACTA
CTCTATGCAATATGCAATTTCGAGAAGAGAGCAGAGCTAGCCCACCGCATCCATCCAGCCTGAAA
GGATTCACTCAACTGGACTCGCGGCTCTAGGTGATCCCAATGGATCCGTACAGGGTGATTTGAAC
TGCTCCTCTCGAGAAGATCGACGGATCGGGCGAGCAAGCAGGGAGAGTGCAGTATTGTGCTTGCG
CCCTTAAATCAGAGAAATCGACAGGACAGATTTCGAGCCCGAAAAGAGAAAGTATCTCCTCTCCA
ATGAGAAAGTATCTCTCCAGCGAAAGAATCTCCATCTCCTTCCTTCGGGAAACAAACCTTCCTTC
CAGGTAGATAGCATTTCCACAGGAAAGAGAATCCGTATTGATTGACGTATTGAAACAATCAAGTC
CGTCAAGATTGACAGGCAAGTGCAAGTCCGTTGACATGACAGGAT
Found at i:88981 original size:11 final size:11
Alignment explanation
Indices: 88965--88992 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
88955 GTCGTCATGG
88965 GAAAGAAATAA
1 GAAAGAAATAA
88976 GAAAGAAATAA
1 GAAAGAAATAA
88987 GAAAGA
1 GAAAGA
88993 GATTATTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (11 bp):
GAAAGAAATAA
Left flanking sequence: Indices 88465 -- 88964
TGTTAGGCGCTATGAATTACAGGAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTC
CACTGTGCCGAGATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCCCTTGA
CGGGCACTCCAGGACCCGCCTACGCTCGCCCAGGTCGGTCCTCCGACCAGATGTGTGGATAACGA
GGCCACCTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGAGCGGTTCGCTTGAGT
TGCTCAACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACTCCACCGTGCTAGCGGCATAGGAGC
CTACTCAGCGTCAGCGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCACGTTCCAC
CACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGG
AATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGG
Right flanking sequence: Indices 88993 -- 89492
GATTATTCCCCTAGAGCTTGTCCCACCTGTACTAAAAATGCATCTCCGCGCGTCTACCTGGCGCT
TTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAGCGATG
ATTGATGCAGTCAGTCAGTGCCCTCGATTATTCCTGATAGAAGGATCATGGCGCCCCGGAAGCAT
TCCATCCAGCAGCAGCATCTCCTTCACAACCACGCGAGGACAAAACTGATGTTAGCTACATTCGA
GCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAATCCAAAGGAAAGGTCGAT
AAAATGATTCAATCTGACTTTATCGGTATTCTGGATTGAGTAAAAAAGGGATATATGAAGTTCAA
GGCCTTGCCAAAACCGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCGAATAACAA
ACTCTTTCCTGCTCCCTCGACCTTAATTTAATTCACTCCCATCCT
Found at i:110601 original size:18 final size:18
Alignment explanation
Indices: 110580--110617 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
110570 ACAGAATATC
*
110580 AAAGATTCTAAGAAGGAG
1 AAAGATTCTAAGAAGAAG
*
110598 AAAGCTTCTAAGAAGAAG
1 AAAGATTCTAAGAAGAAG
110616 AA
1 AA
110618 GTCAGATATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.53, C:0.08, G:0.24, T:0.16
Consensus pattern (18 bp):
AAAGATTCTAAGAAGAAG
Left flanking sequence: Indices 110080 -- 110579
AATGAAAGAAATGAGCTTTTTTGCCCCTTCACTCACTTCTGAATGACTCCTTTAGCACTCCCTTT
TTTATATAAAAAAATAGATACAGTTTACCTTTACCATACCTTCCAACCAAGCAAGAGTGTTTTTT
GCAAGCTTTTTATAGCCGCTCTTCCTAGGGCAGGGCAGCAAGTCTCTTATCCATATTGAAAGCAG
AAGTTTGAATATGAGCTAAAGTTCAGTAAGAACTAAGCTATTGGTGGAAAAGAAAATGGCACGTA
TCACTATGGGGAGGGGATAGGAAGTAAGAAGCGAGAGTTCGTTTTTGACAAAAATAACAAATGGG
TAGGAACAAAACCTCTTCATATAGGAGAAGGGGATGTGAAAAGTTTGAATCCTACTTCCTATACT
AATACTAGTACTAGTACTAGAAGTTAATTAAAAGCTTATTAGAGCAAAATGAAGATCTCCAAAGA
GAATTGGCTAATTCTGATCAGATGAATTCTGATTCACAGAATATC
Right flanking sequence: Indices 110618 -- 111117
GTCAGATATGCCTGAGAAGAAAGCAGATAATCAGAATAAATAGATAGATGAGATCATCCGTAAGA
TCAAGAAATACCTGTAATAAAAGTGGTAGATCTATCGATCTATGAGGGACCCCTTCCAAGGGTAC
CACCCGAACCATATCTAGCTTCACTATGCTGTATCCCCCTACCATTCATTTTCTACAGCCCGACA
CAAGGGTGTAAGTTCGGGGGAAGAGCTAATCCGCTAGCAGGAGAAGAGTAGCGAGTTGAAAAAAG
ATCGGATCAGTCCTCTACGAGCCGAGTAGCTCTCTTCTTCGATGCTGGCATTCCTATCTGCCGAG
TAGTCCTATCATACTATCCGAAAAGATTAAGGCTGTGGAAAAAAAACCTTAGCTGGTCTTTACTT
CAACACCGCTGATCACTTGGCTTTGCTTGCCGCTGCGTTGACTCTCCACTAAAGTAAAGTCAAGT
AGTGACTCGCCCCTTAGCTCTCCATAATAATAGTCTCAGCTTCAT
Found at i:130128 original size:18 final size:18
Alignment explanation
Indices: 130101--130135 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
130091 GCTCGTAACA
*
130101 TTAGTCGTTACTCGCTCG
1 TTAGTAGTTACTCGCTCG
130119 TTAGTAGTTACTCGCTC
1 TTAGTAGTTACTCGCTC
130136 AGCTCATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.40
Consensus pattern (18 bp):
TTAGTAGTTACTCGCTCG
Left flanking sequence: Indices 129601 -- 130100
TAGACTCCGTTCGTGTTAGGACATCCATAGCCAATAGTAATAGTAGCTAGTAGCTTCGCCCCCCC
TTGCCCCCGGAAAGGTTCTCATTCCTCACTGGATCTAGTTGACTTGCTGCTACAGCAATCAATCT
ATCTATATGTTCCGGACGGAAGAGAGAGTTTCCTACATTCCCATTCCCATGAACTGAACATCGGG
TACCAACGATCTGGAATCCCGTGCTACAGATATGCACCTGTGCGGAACCAACCTGGCAATCCTCC
TGTCTATTCTTTCTATCTGGACTAGCGCTTCCCACTGGAGCTTACTACTTGACTAGAGCACTTGA
ACTTGTTAGTTTCATTAGTCAGTTTCCTAGCATAGCAAAGTGAGTTTCCCATCAACGGATTATCA
TCCTGTTGTTTCCATGAACATCAGGTACATATATGAACCTGTCAACGGAGCGGAACATATGATAT
GAACCAAGTAGATTCGTCTTTTTGCTCGTCAATATGCTCGTAACA
Right flanking sequence: Indices 130136 -- 130635
AGCTCATTAGTAGTGAACTATGATCATTTGTGAGGAGTATGTTTTCAACTCTATGTATGTCAATT
CGAGAGTAGAGCGATCTATGTCAACCAAGAGCAGAACTCTCTCTATTTCCGGCACAGGCTTTCTT
TCAATCAAGAAGAAGATTATTTCAGATTTTATCACTATCCGGACTGCTATCTACTATCTACCTAT
CTATCTACCCGGGCTCGTTGTGAGGCGGGACCCAACCCTCCTCTTCACTCCACTGCTTCAACAGA
AATGGATCCATCATCTGCTACCCATGAGTAATAACGTTACGAATCTACCACTGATCCCGAGGGCA
AGTATGAAAAAGAGAGTCAAGCAAGGTTGGATTCGTATGTTCCATTTGAGTAAGCCTCTGATGCC
CTGCGCACATAGCTTCTTGCATGCCCGATGGCAGATCTCCCAACCTGGAGTATATTCCCGGCCCC
GTAGCTTAGCTTAAGATCTTCGTATTTCAAGTCCACCGGCATGGG
Found at i:131169 original size:6 final size:6
Alignment explanation
Indices: 131158--131190 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
131148 ACCAAGGCAG
131158 TATTAC TATTAC TATTAC TATTAC TATTAC TAT
1 TATTAC TATTAC TATTAC TATTAC TATTAC TAT
131191 GGAAATGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (6 bp):
TATTAC
Left flanking sequence: Indices 130658 -- 131157
CGCCCTGTCCTCTAAGATATGAGATCCACCCACACCCAAACCTGGAAAAGCGGCAGGCTCTAGTC
GAACTCCATACCAGAAGAGAACCCTTTCCGTTGGAAGAAAGAGAAAAGGGGCCGGGCTATGCACT
TCAAGAGAACCAACCCAAGAAGCACTCAATAAACTATTATATATAGTCCTGGCCACCAGATCAAG
CTAGCAGGAATGGGTACTACAGCACCAAGAAAGATCGATGGAAAGGGATATGAAACTATTTTAGA
TGCACGCTCTAGCTCTAAAGCAAGCTTATACGCACTCATAAAGGTGCCGTCTAGTGCCGTGAAGA
TAAACCGATTCTCTGACCATCCCTCGAGATAGCCTTTTATTCTCTTTAAGGAAAGGATCTGGGAG
CCATATAAGGATGAGTTAGCCGTAGGATATGATTCCTTCTTGCTTGTTGGGAAGGGAATAAGGGG
ATCGAGAATGATGCTGCAAACAAGATAAGGGATTCACCAAGGCAG
Right flanking sequence: Indices 131191 -- 131690
GGAAATGGAAATGGAAATGGTATAGAGCTAGCCCAGAAAAGAGAATCCATGGCATGGCTATTCAC
TCAATCAAAAGAGAAGGTCATAATCTGGAAACTATTCTCATACAGAAGGGTTCTACGCTAGGAAT
CACTAAACTAGACGAGCACTTCTCAAGTGCCAGCTAGGAAACTGTCTGTACTGTAAACCAACCAC
CCGTAGAGAACTTTTAGTAGATGGAAGCGAGCTCCCTAGTCCTATTCGACCCACTTGGAATTCCC
TTATGTGAATCATTCATGTAGCATTGATATACGAGAATTCGAGATTGCTCCACCGGGCCTGACTA
GTAAATACAGTATACGGGGAAGAGAGTCTTCTGAACCTGAAACCTATGAAGCAAGGAAATCACTC
TACTCTGCAAGCTATTCCACTGGAAAGGACAGGTTTCTAAAGGAATGGGATTAGTACTACTTAAT
TAAGGAAGGGATGAGTGCTGTCTTCCGGGCGGGGGTTCTAGCAAC
Found at i:144199 original size:21 final size:21
Alignment explanation
Indices: 144173--144214 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
144163 TAGAATGGCT
144173 ATGCCTACTGATCTTGACTTA
1 ATGCCTACTGATCTTGACTTA
144194 ATGCCTACTGATCTTGACTTA
1 ATGCCTACTGATCTTGACTTA
144215 CCTACCTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (21 bp):
ATGCCTACTGATCTTGACTTA
Left flanking sequence: Indices 143673 -- 144172
TCTCCAGCTCTGAGGCTTATGTGGGCGTAACCATTTCTGTTTGTGAGCTTAGCTTTCCGTCGAGA
TGCGTGAGAATAGTTGACCATTGCTTTTTCCTCTACCGGCACTATTATCGATCAGGTTGTCTCTG
TTTGCGGGTCTAAGGAAAGGAAGAAAAAGATCCAATAAGTTCGATGGGTATTGGTCATAGGCTTG
AAAGAGTGTTTCATAGCTAAGGTATCTTCCGGATATATATGTGCGAGATCCAATAGGGTCATAAC
CCAGTGCTTTAGCGGACTCTGGTGCCAGATCGTTTCTCAAATCATAGAGAATTGATAGAGCTAAC
CATATGAAATGCATCGATTTCACTATGCATCATTACCAAGGCCATTGCCAGGGAAAGGCTGAACC
AGATCAAATAGCAGCAAATAAAATAGTAGATGAAGGTCTAAGAGATGCCTACCCAAGCCTAGCTG
ATATGATAATATCACCTGACATCTAGACTAGTGCTTAGAATGGCT
Right flanking sequence: Indices 144215 -- 144714
CCTACCTTGGCATGCAATAGTTTCGCCCACCATTAGATTAGTGGTATATTCTTCTAGAAATATGG
ATTCCTATAAGCCTAGAAGGAAGTATGACTAGGACTCATGTGTGCTTCTGCCTCTATTATTGTGG
GCTGGAAATCCAGATGGTCAGATGAATGAATCAAGTCCGGATAGATAGATAGGATCCCAACGATT
CCTGTCTACTTGCTAAAATAGTTTTAGATGGCCTACCCCCACAAGAGATATTCAATCAAGCTGAA
GGGAAAACCCCCTCAAGCAGAGTCAAAAGACACAGTGAAAGAAGCCCGCTAACCCACTCTTCTTT
CCCCCCAAAACCCAGAAGAGAAGGTAAGTAGGGGCCTCGGCATCTCTATTTGCAAAGAGAGATAC
CTACACCAAGAAATATGACTTTTTATGCATCGGAAAACGAATGAGATCAGAAAGGCCATCATTGA
GGCAAAAGAAAAATGGAACTCGGAATACGAATGAGATCAGAAAGG
Found at i:149478 original size:5 final size:5
Alignment explanation
Indices: 149468--149502 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
149458 AGACTAATAA
*
149468 ATAGT ATAGT ATAGT ATA-T ATAGT ATAGT ACAGT A
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
149503 CGCTTGATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 148968 -- 149467
CGATGGATAAATCCGCTTTTCAAAAAGAAAAACCTCGATCTTCAAGGTGCTGGAGGGAAGCATAC
CTACTACCAGCTTAGTTCAGAGTTGCCTCAGCGCGCTCGAGTAATAACTGGGAAAATCAAGGCAG
TCTTGAATTAATTAGAAGAGCTTTCTCATCAAAGATAAAATAAACTATATATGAGAAGAGAAGGC
TGTGCTTATTTGATTCCCTCCTATTCTTTGATACCGCTTCTCACATAGCGGCGCCTAAGTAGTCA
CCATTGCCATTGGAGCTTCCTTGCTTGCATTCTCATTTCAGAGTTTGGGACTACCACTAGAACTC
TGTGCGCCAGATCAATATTCAAGTCTGAAAAAAACACAACTCGAAATGCTATTGCCAATCGAGAC
ACCTGCCTTTTATTCATTCATCGACCACATATCCTCCAAGGCAGAGAAGTAGGACACATGGAATC
TCAGATCCTGGCCTGGCCTATGAACACATTCCCAGAGACTAATAA
Right flanking sequence: Indices 149503 -- 150002
CGCTTGATGGATCGCATGGACTTGAAGCTGTTTTGGCTGGGACTCCTATTGCTAGTGCGGTTGAA
GGCGTTGTTGATGGTAAGGTGATTGGTGATATGAAGACGGATTGCCCGAAACAGAATAAGGGTGA
AAGAATGGCGGATAAGGGTAAATCTATTGATGAGAAAACTGCCTCTGAACAGTATGCGATTGGGA
GCGGTCTATTAACATGGCTGCACAACAATCAATTGATTGAGATCCACAATCCTCTTGTAGAGGTC
GATCTCTCCGAGCATAAAGGTAAAGGATAAAAGTATAAGCCAGTAAACTATGTTAGGTGTCTATT
TGACATAAAGGATCTACCGCTCTTTACAGAACTTCCTATGGTGTCCCCTCCGCGAGATTGGAAGA
ATCGCAGAGCATCAAAATGGGTGAAGGCCTCTGACATGAATCGTCTCACACACAAAGCACGTGAT
CTATCAGGCGGTTACTTAAATTCTGAGGGAGCGGTTTCTAGGAAG
Found at i:165085 original size:6 final size:6
Alignment explanation
Indices: 165067--165105 Score: 69
Period size: 6 Copynumber: 6.3 Consensus size: 6
165057 GAAAATGCGT
165067 ATAGTA TATAGTA ATAGTA ATAGTA ATAGTA ATAGTA AT
1 ATAGTA -ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA AT
165106 CTCATTGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (6 bp):
ATAGTA
Left flanking sequence: Indices 164567 -- 165066
TGAGTAAAGGTCCGCTCAAGGCCATGGAAAGGCAGATAGTACTTGATACAGGACGAGCCCAGTCT
CTATCTAGTACGATATTCTGGTATGTTTCACTGAATTGGCATTTCTAGATACCAAACAAGTAAAA
AACAGCAAGTTAGTTAGCTCAGTTGGCATAGGCGAAAAAAAGAAAAGGAATCAACGATAAATCGG
GGAAAGAGCCGCAAGCGCGATATCATCTCTATATAGGAAAAATGGATTTTTCTTATTTTATAAAG
TTATGGGACCCTGGCTTTAAAATCTTTCTTTTTTCTCGGCTCGAAAGAGAAAAATCAAAGTCAGG
TAGCCGACGAAAACCGAAATAGCACAGATACAAAGTAAAGAAAGTATACACGCGATAATAGATAG
ATATATATTATATATAATGTTAGAAGGAGCTAAATCAATAGGTGCCGGAGCTGAACTCGTATTCA
GAGATGGAGGAAATCAAGTCTCATGTTGCTCCTCAGAAAATGCGT
Right flanking sequence: Indices 165106 -- 165605
CTCATTGGCCCACTAGATAAGGATGGGACAAACGCTCTAGTGTATGCGAAACGAGCATTGCGTTT
TGTCCGAGAAGTTCGTGAAAGAGTGCTCGTTACATCAAAAGAGATGGCGATGATCTGTCAAATCG
ACATTGTGTCGGTGTTCAGTCTCCCGCTCCTGTTCTCAACTATACTATGGCTTTCGTTACTATAC
TATGGCTTTCGTTGGGTAGAGCACGGGAGAATAAAGTCTATAGTGTATGCGTTACTGTACTGGGA
AGCTAGCATTTTTGCTTGTCATGGAATCAAGTCTATTTGTTCGAATGTTCTTTTTTTCGTTTCGT
TGGAAAAACCAACGCCGACGATTCGTCAAGAATGGATCAGTCTAGTCTCCTTTCTCTTTTGGGAG
CAGAGCTGAAAAAGATGGAATTGTCAAGTACGATGATATTTTTATTAACGGATAGAAAAATGCTA
TTATCAAGTAGTAAACCCATTATGATTGCAACTCGTGGGATGCCT
Found at i:165299 original size:20 final size:20
Alignment explanation
Indices: 165274--165313 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
165264 CCTGTTCTCA
165274 ACTATACTATGGCTTTCGTT
1 ACTATACTATGGCTTTCGTT
165294 ACTATACTATGGCTTTCGTT
1 ACTATACTATGGCTTTCGTT
165314 GGGTAGAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (20 bp):
ACTATACTATGGCTTTCGTT
Left flanking sequence: Indices 164774 -- 165273
AAGCGCGATATCATCTCTATATAGGAAAAATGGATTTTTCTTATTTTATAAAGTTATGGGACCCT
GGCTTTAAAATCTTTCTTTTTTCTCGGCTCGAAAGAGAAAAATCAAAGTCAGGTAGCCGACGAAA
ACCGAAATAGCACAGATACAAAGTAAAGAAAGTATACACGCGATAATAGATAGATATATATTATA
TATAATGTTAGAAGGAGCTAAATCAATAGGTGCCGGAGCTGAACTCGTATTCAGAGATGGAGGAA
ATCAAGTCTCATGTTGCTCCTCAGAAAATGCGTATAGTATATAGTAATAGTAATAGTAATAGTAA
TAGTAATCTCATTGGCCCACTAGATAAGGATGGGACAAACGCTCTAGTGTATGCGAAACGAGCAT
TGCGTTTTGTCCGAGAAGTTCGTGAAAGAGTGCTCGTTACATCAAAAGAGATGGCGATGATCTGT
CAAATCGACATTGTGTCGGTGTTCAGTCTCCCGCTCCTGTTCTCA
Right flanking sequence: Indices 165314 -- 165813
GGGTAGAGCACGGGAGAATAAAGTCTATAGTGTATGCGTTACTGTACTGGGAAGCTAGCATTTTT
GCTTGTCATGGAATCAAGTCTATTTGTTCGAATGTTCTTTTTTTCGTTTCGTTGGAAAAACCAAC
GCCGACGATTCGTCAAGAATGGATCAGTCTAGTCTCCTTTCTCTTTTGGGAGCAGAGCTGAAAAA
GATGGAATTGTCAAGTACGATGATATTTTTATTAACGGATAGAAAAATGCTATTATCAAGTAGTA
AACCCATTATGATTGCAACTCGTGGGATGCCTGGAATCCCACTAAATCGAGAATCGGAATCGGTG
GAGGATGTGCATAGGGTACTCCGAGCCCTCCCCTTATTTAGAGAAATGGAAGGTATCTTGCGTGA
GAGGAACCTGAATCTCCCGTCAGTACAGGAAATAAGCGCTTTCCGTGTGAATCTATTCTCTGGTA
TCCGGCGTGAGAGTGCGATTGCGGACTACGACGCTTTTTGGCGCT
Found at i:170630 original size:5 final size:5
Alignment explanation
Indices: 170620--170650 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
170610 GGACTACTAT
170620 TCATA TCATA TCATA TCATA TCATA TCATA T
1 TCATA TCATA TCATA TCATA TCATA TCATA T
170651 GGTGAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TCATA
Left flanking sequence: Indices 170120 -- 170619
CTAGCCTGACCTGAATAGCTATGTGCCAGAGCATCCCGCAACCGAAAAAAGGCAGTGGGCACTTT
ACTTTGGCCATCCATCAACTGAGGCAAGTAGGCGCGAAGCGTCGCTAGGAGAAGGAGAGCATTCG
TATGAGTCTACTAGTCATAGTTTTCTATTTTGTTAGTTCTACCGGAGATAAGTATGGAAGGTACT
ATGAGTATATATCCTGGTATGCTTCTAACTTACCTTTCTTCCTCGGGGGTTGGCTTTGTAATGGA
ACATGAAAACACCTTTTTTGCTTCGCCCATCTCTATATGCCACGGCGAATCGATCGGTTGAATCC
GCTGCAAGCCCATCTTCAAAATCCCCACATAGTAGGAAACTAAAGGAGCTACTAAGCGAGGAAGC
CCGATTTCTAGAGGACTAGAGAGGAAGGACTAATTCGGAGATAAATCATTCAATAGCGGATAAGA
ATCGGGTTCATAGAATCTATTTTGGGTAATGCATAGGACTACTAT
Right flanking sequence: Indices 170651 -- 171150
GGTGAAAAGACAGGATGTATTCCGACGAAATTGGATGTGATCGGCAAGAGAAAGATGGAATTTTA
TATAAGGAAGGAAATCAAACGCGTTGTTTGAGAGGGTAACTAGAGAAAAAAGAAAAATAGGCTCT
CCCTGGACTCTACGCAGGACTTCTTTCTAAGCCTTACATAATTTGAATTTCTCTGACATTCCATG
TTTCCGAAACGGATCCTATAAAATATTTCACTTTTTCTATGATCATCTCTATTTTAGGTATTCGG
GGAATCCTCCTTAATAGACGAAATATTCTTATTATGTCAATGCCAATTGAATCAATGTTATTAGC
TGTCAATTTGAACTTTTTGGTATTTTCCGTTTCTTTGGATGATATGATGGGTCAATCATTTGCTT
CATTAGTTCCAACAGTGGCAGCTGCGGAATCTGCTATTGGATTAGCAATTTTCGTTATTACTTTT
AGAGTCCGAGGGACTATTGCTGTCGAATTTATAAATTGCATTCAA
Found at i:174178 original size:29 final size:29
Alignment explanation
Indices: 174136--174193 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
174126 GTTGAAGCGG
174136 GTTGCAGGACTGGTACTTGACCATTATGA
1 GTTGCAGGACTGGTACTTGACCATTATGA
*
174165 GTTGCAGGACTGGTACTTGACCGTTATGA
1 GTTGCAGGACTGGTACTTGACCATTATGA
174194 ATAGTAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (29 bp):
GTTGCAGGACTGGTACTTGACCATTATGA
Left flanking sequence: Indices 173636 -- 174135
TGTAGACTTAGGGAATTCTCATAGTTGATGATTATTTCCTACGAAAAGACAATAGCCAACAACAT
AGATTTGCCACGGACAAGGATCTTGCCACCTTATTGTGAATTCCCTTTTTTATTCAATTGTGTAC
TCGTTCCTGTTGTTGTGCCATTAGTGACTTGAGAAGACTGTGTGAAAGAGAGCAAGAAGCCGACG
CGAGGAGATCAAGATCACAGTTGTGCTCATGCCATTAATGCTGCCCAATCCACTCTGAGATCTCT
TCCAGCCCTAAATTCCTTAACCCATTGCCAAAAAGAGATGGGAAAAGAACCTCCTTTTCTTACGC
TCCTCTTTCTCAGAGAGATGGTGAACTTGCCTTGCCCTACGAAGCTGTGAATGATAACACGGGAG
GGGTACACCACAAGAATCTCTAAAGATTATGGAGATTCATCAAAGATTACGAGAATTGGAATTAC
AGGTATCAGATCTTATCATTTGTGGTCCTTAGAACGTTGAAGCGG
Right flanking sequence: Indices 174194 -- 174693
ATAGTAAGAGTTCTTTCTACACTTGTAGATGCGTTAGGTATGTAGTAGTGAATTTTCTCCCATGT
GAACTTCAGAGAGATTCGTTAGATTACCAACAGATAAAGGAATTGGACCTTAAAAGCAATTTTTA
AAAAAGTTCAACTTCAACAAAACGTTGCGTTTAAGTCTACCTATGGTACTAGGAATCCTTCCACT
CAACAGGCAACGATCCATAATAAACTCAGTTAAGCCGATCAAATTTCCTATTTAGAAAAACCTAT
CACGAAACTATTCTTAGCGAATAACGTGCCTTTACTAGTAGTCCTATTTTACTGACCTATTCCAT
TGCTTCCTACCAGTTCCGATCCAAATGCCTACCCCTCTACTCCTATGTTTCACAAACCTGCGGCC
TATCCCTTACCAAGCTACCTAATAGCCCTGGCAGTAAATAAACTAAGTCCCAAACCTTATTTATC
TTCATTGACTCCATCTCATCCAGCATGGCAGCACGCCATTTCGGG
Found at i:188541 original size:20 final size:20
Alignment explanation
Indices: 188513--188551 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
188503 TCTGGGGATA
188513 AAGTAAAGTATCGTAAAGTT
1 AAGTAAAGTATCGTAAAGTT
*
188533 AAGTTAAGTATCGTAAAGT
1 AAGTAAAGTATCGTAAAGT
188552 AGTTGACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
AAGTAAAGTATCGTAAAGTT
Left flanking sequence: Indices 188013 -- 188512
GCTTGCCCTCCGGGGCCCCGGGAAGAGGAAGAAGGAGATAGAGCAAAGGGTCTCCTCTTTCTGTC
CGCTCTTCCCGGCATGTAGAGATCCGATTGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCA
TAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCCATCTGACCTGCTTAATCAATGACTCCGG
TAGTCACCTGAACCACTCTCTCGGATAGCCCACAGCCTCTCTTCTGGATGCGAAAGAAGATTCGA
TCAACGTACAAGGTTTGCCTTCTTGTGATGTGAGAAGGAGGGTTCTTAATTGTGTTCTCAGTGCA
AAAGGAGTCTGGTTCAGTGAGTCTGAAGAGAGAGAAGATCAGTAGAGCAGTTCGGGGCTTTGGGA
TTTGCCTGATCGACCCCTACCAGTGTATTAAATGAAGATTGACATTCGTATGTACAATTTACCGG
TTCTTCCTCCCGAATTGAGACCCATTGTTTATAGGTCTGGGGATA
Right flanking sequence: Indices 188552 -- 189051
AGTTGACAAAGCAAGTAGGAATAGGTCATGTCACAGATAGGCAAGTATAGAAGCAGGAGAAGCTG
ATAGACATTTGTGAATAGCAAGGCCAAGCTGTATACATATAAGCATTTTAAGGAGTTGTTTGTTG
GCATATGGTTTGTTGTCACCACGGGATGCTTATTGTTGAGAAACATAAAAAAGGTAGGCATATTG
TTCAGTTCACGTTTAGGTCAGTATAGAAGTAAAGCACGAGATAGGTGTTTACAAGCTAGCTAGGG
TTTCTAATAGGTATAAAAGGGTAAGCTAATAACCAAGTAGTAGGGATAGGTCAACGCAAGTCACG
GGTAGCCAAGAGAGACGTATTTAAGACTTTTAGTTCCAGGATAGGCAGTCATGTCAAGTAAAGTA
TAGCTTAGATAGTTCCTATAGAAGTATAGCTAGCCAAGTGACTAGGTTTAGCGGAGATAGAAATA
GCGGGCGAGATATCAGGAGACAGGACTAGGACTTTGAACGAAGCA
Found at i:222180 original size:6 final size:6
Alignment explanation
Indices: 222169--222198 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
222159 AGCGGTGGGC
222169 TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT
1 TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT
222199 AGTAAACAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
TCTTAT
Left flanking sequence: Indices 221669 -- 222168
AAACTGATGCATCCGAAGACGGTGAATCTAGAATAGAGGCCGGGTGGGGAAGCAAAAGATGCAAG
AGAGCCTTTTTCCGGGATTGGATTTCACTCATTTAGTGCTTGGGATGCAGACAGGCGTGGAAGAT
GAACATAAGAGAGCTCCGCCCTTGCCTTGCACCGGTGAACAAAAGAAAGAAAGGAGACAAGGTCG
GAACTAAGACGTCAATAGCTTATTTTAAGTGACGTATTCCTGTCGGGAACAGCGAGCAAGGATAA
AATGAGAGTATGAGCCCACACCCATATAGAAATCAGTCATATGCCTGATAGTCGTTATCTATTCT
TTCTCAATGATAGTATTATTACCCGAAAACAATATGTACAGAGGAAGCTAGTTCTGTACTCTAGT
TCAGTCCCCAAGGCGCGAGTGAAGCCCTTCTCCAGTATGGTAAAGTGAAACCGCTTCGGAGTTTA
TGGTTCGAAAGAAAGAGAGAGGAAAGCACTTCTAAAGCGGTGGGC
Right flanking sequence: Indices 222199 -- 222698
AGTAAACAAGAGTTCCGTTAAGCTCTGGGACTCTAGGCAAGATAGCTGTAGTTTTGAAAACGTAA
ATTGACCGAAGTTTGTCTTTACTTTCCCCTATTCTACGTATACCATCTCCGAGCCTCTCGTTAAA
TCGAATCAATTGATGAAAGATGCCCGTCCTTGCTAGGCCAGTTAGAAGTTCCTGGGGATGTGATT
GACCTAAGAAGCCCGTGTTATCGATAGATGTAAGTTCATAGTTGAAGACAAGGGAGTTTTAGCTT
TTTCGTAGATAGTCTGAGTTCGAGCTACTGTAGTCTCCCCCGTTGACCTTCTTTTTTAGATAGAA
TCCTCAATGAGTGGAAAGGACTCCCAGACTTGCTCCGCAGTACGAGCCCCATACAGAGCCGCGCC
CTTGTGATATGATAAGAAGAAAAGGGGCCAGGCCACCCTCTTTTCTTTTCCGCACCAAGCCTTCT
TGTAAAATAGGGTGTATAGCTCAGTTGGTAGAGCATTGGGCTTTT
Found at i:223680 original size:5 final size:5
Alignment explanation
Indices: 223670--223695 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
223660 GTTAGCCTGG
223670 ATCTT ATCTT ATCTT ATCTT ATCTT A
1 ATCTT ATCTT ATCTT ATCTT ATCTT A
223696 GGAGGAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.00, T:0.58
Consensus pattern (5 bp):
ATCTT
Left flanking sequence: Indices 223170 -- 223669
TTTCCCAGCAAGTGAATGCGAGTCCAGTTCACCCTCGGCCTCGAAAACCTGTGAAGTACGAGGAA
AGAGTAGGGATCGAGTGTGAGTTCCGATCCCAGGCAAGAATGAAATTGGACGGTCTCAGCCCAGA
AAGTGAAAAGAACGAGATCTATAAAGAATTCTACTAGCTGAACGAGGCTGTGAAAGAATCTCTGT
CAGGTGGTGCAGATGAATAGAATAAGCCAAGCCCTGCTTTTTCTCTTTTTAGCCTTATCCGCTCT
CATCTCGCATGTAGAAAACAGCGCTCATTGTGTATAGCTATCATTGAAAGACCCTCTCAATAATA
ACTTAAACAAAGAAAGTACGTAATGGCCTCAGGCCTGCTCTATTACATCGACCACCTTCGAGTTC
TCTATATGCGAAGAGCCTGGAATGGTGATAGAACTATCGGAAACTACCCAACGACGAGCGAGCCT
GAGATCGCCTACCAGTCATTCCATTGCTTGAAAAAGTTAGCCTGG
Right flanking sequence: Indices 223696 -- 224195
GGAGGAAGGATTGAAGAGCTCTAGAGAAGGTCTGGAAAGGATGGTCGGCCACTAGAAAGCAACAA
TTCAGCCGGAAGTTTGGACACATTGGCTCTCGTCTTAAAGTTCCCATTGACGACCAAAGGATTAA
TTCCTCATGGAGGAAAGCCTCACTACCGATGCTTTACTTTCGGCTCCATTGATCTTACTCCAACC
TAAAGAATACACTGTCTTGCTCAATGTGCAAGGGATCATTCTATAAACTTGGTCTTGGAAAGCCT
ATCAAGAGTAGCTCGGCATCGGGAATCTATGAAGGAAGAATACCCCTTTGCTTTCTTAGGGGAAT
AGCCGATCTTTTATCAGAAGCGAGATTACCGGTCTGTCTCCTTAATAAAGAGTCGAGGAATAGGA
GGAGAATCCACTGGCACTCTTAGCAAGAAGGAGCTCCCCTCCAAGTCATGCACCTAGGAACGAAT
GTTCTTGTGGAGCCTGTCTCTTTATGTGATACCGCCGCTACTCAT
Found at i:230197 original size:5 final size:5
Alignment explanation
Indices: 230187--230217 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
230177 ATGCTGGCAG
230187 TACTA TACTA TACTA TACTA TACTA TACTA T
1 TACTA TACTA TACTA TACTA TACTA TACTA T
230218 GATTGCCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 229687 -- 230186
TAATTGGGGATGAAATTGGAGAATCCGAATCGTAGTCCTCGTGGGAATGGTCGCAAAATGCGAAG
GAGGACGCCTTGTCGAAGCTGGGGATCTAGATAGGTACCGATCTCGGTGGGGATGACCCTATTGA
ATCTATTGAATTTGTTTCATTCCTTTCATGCGCAGATGAACCTTGTCTGCTTTGGAAGTACCTTT
GCCCTGGAGTGGAGGATTGTCCCGTGATTGAGGGATGTCCTTTCTCCTCGGAAGTAGGGTATTCG
TATTCGTATTCGTATTTTAGTAGAGGAGGTTCCGCCTTGCCTACTGCTTTGTTACCAGAGCTGGA
TCGATTTCATCTTTTCCCAGTGCCCATGCTCCTACTACTACTTATGCAGCTATTCAACCTCCCAT
AGATGGTAATGGTGCTTCCCCAGCAGCTGTTCCTACTCCTTTGGCCCAAATCAGGTGACTTTTAA
GTTGAAGCTTAGCTTGCCCGCAGAACGATGTAACCATGCTGGCAG
Right flanking sequence: Indices 230218 -- 230717
GATTGCCTTAGAGCGCAGATGTCTCTGTCCCTAGGAACGTGATGCTTAGGTGCGAGGTGAAACAC
AAGCAGGAGATCGAGAAGAAATCATACGGATTGCAACCTACAGATGAAGAATCTGCTTCATTGTT
CCCACCATCTATATCAGATGTTTAATAAGAATAGGAATCGAATAAGCTGCTGATTGACTGAGGAA
GCATTTGAAAAGAAAGGAAGGGTGATGCTTGTTAAACAAAGCTGCGTGTGGGGCCGCCACGTATA
GCTGTAGTTTCTGCTGTAGCATCGGTTATTTCCGTTATTGCTGTAGTAGCATCGGTTATTGCTCA
GGTTACGAATGACCCAATCTATCTATGGCAACCACCCCTACTTTTAGTAGATAGAGATGCGCACC
TAGAAAAGACGGATGAAAGAGAACCTGCCCTTCTGACTTCTTCTCTTGTCTGTCCTTTACGCAAA
GCGATCTATGGTCTCAACAAGCCCCGATAGCGTCGGTTTTTGAAG
Found at i:248384 original size:23 final size:23
Alignment explanation
Indices: 248358--248405 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
248348 GTGAGACAAA
*
248358 TACTGACTTGTAATCGCTGAGTC
1 TACTGACTTGTAATCGCGGAGTC
*
248381 TACTGACTTGTATTCGCGGAGTC
1 TACTGACTTGTAATCGCGGAGTC
248404 TA
1 TA
248406 TAGTATGCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (23 bp):
TACTGACTTGTAATCGCGGAGTC
Left flanking sequence: Indices 247858 -- 248357
TTGGTGTCCTGTAGGAATGGTTGTAGAAGGTAGGCAGTCCCAATCCTAGCCCATTGCTTTTACTT
AGTCCATACACTCCATGGCTTACATGACATATCGGACATACTACAGCATGAGGCATACTGGACAG
ACTGCATAGGCTTAAGTAGTAGACTCATGGCTTACATACTGGACAGACTGACTCCTGTAATGCTT
ATTGCCAATCTAGCTAATGGGCTGACTTCATTGGCTTGCTCTCCTCACCTATGGATTCGTATTGA
AGTCTTGGATGATGTAGTTTATCAATCTTAGAGCATGGTTCGTACCATACCTGTAGTGCCGTTCC
TTGTGGTTCTTCTCCTGTGGTTGCTTTAACGAGCTGGAAGCGCCCTTCGACCGGCCCAGCGTTGC
CGAAGAGGATTCGAAGACAAATGGCAATGAAAGGTTGTGGGAAGAGCTTATTTGAATGAAAAGAG
CAGAAAGAAGCAAGTCGGGGTGAAGAAGACGTACGGTGAGACAAA
Right flanking sequence: Indices 248406 -- 248905
TAGTATGCTCTTTTCTCTCTTTCTTGCAACTTCGTTCTTTTCTTTTTTGCATCCTTTTCTCAATG
TCTTATTTGATCTCTTCCACCTTGCCTATGCCTATCGGGTATCCTGCCCCGGTGTATGTACCATA
ATGGATTTTAGCATAAGAACAGTGCTCTTCCTCGTTGGCTCGGTCCCCCCTCTCTCGTTGTCAGT
TTGTCCACTAATTCTTCTTACCAAGGCACAAATCTGCTGCATCTATTTCAAGAGTTGCACCTCAC
TCGTCACCACGCCATATTGGCTTTTCTCTTTCCACTGCCTCAGCCACCACTCCTTAGCTGCATAA
TCCTTGACGAGATCGTAATGTTTAATTAGTTCCAGCCACGCTGTGTCAGATTTCATTCCTGATGC
ATTTTTCTTTTATTGTCTGGTGATTTTGAAAAGTCGGCACCCACAGATCTTCAGTGCGAATATTA
GAGCAGACAACTCAAAATCGTGCGTAGGATAGTTATGCTAGTGGG
Found at i:256645 original size:24 final size:24
Alignment explanation
Indices: 256612--256661 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
256602 TGAAGCAGCG
*
256612 CGTCGGGCTACAATCGGACAATTC
1 CGTCGGGCTACAAGCGGACAATTC
* **
256636 CGTCGTGCTATGAGCGGACAATTC
1 CGTCGGGCTACAAGCGGACAATTC
256660 CG
1 CG
256662 AAGAAATTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (24 bp):
CGTCGGGCTACAAGCGGACAATTC
Left flanking sequence: Indices 256112 -- 256611
CTTAATTGAGTCGGTAAAGATCAAATCAGTTTATCAAAGTGCTTCTCTGATTGCTCAAGACATCT
CTTTTCAACTGAGGAACAATCCAATCTCATTTCGTTCCATTTTTAGTAAAATAGTTAAGGATATT
CCATTAATAATGCCAAAAGGGGTGGAGGGGATACGTATTTGTTGTTCTGGTCGATTAGGGGGTGC
GGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTTGTAATGTATTTAACCAGAAAA
TCGATTATGCTCCTGCGGAAGTATCTACTCGTGACGGAATTTCAGGTGTCAAAGTGCGGATCTCA
TATAGTCAAAATAAGAAGGGACGTGCTATATCCGAAACGTACGAAATATAGTAAATATAGTAAAT
GCAGATGTAGTAGGGGTCGCGAACCGGATGGTACACAACTTGGTTTTGGAAGATATGGCACCAAA
AGTAGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCG
Right flanking sequence: Indices 256662 -- 257161
AAGAAATTGTAAGATATGGGTAAGAGTTCTCGCAGATCTTCCTATTACGGGGAAACCCGCAGAAG
TTCGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATC
CCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTAGATTAGCGGCGCATAA
ACCATGTTCGTCAACCAAGTTTGTTCAGTGGTCGTAACGTAATTGGTTAGTGGGGAAAAACCGGG
CCGGGACTCAAAATAATTTTACGAAGTGTTTGTTCCGGAAGTGGAAAGACAAAGAGGGATAGGGA
GCTCGCCTCCTTCTTTTTTGTAATCGCCGAAATGGAAATTGTACGACGACCCTTCTTGTTCCAGG
CATACGACCCTGAGACGTGACGGTGTCACTTTTCCGGCCCGGTAAAGTGACAGTTATATAAAAAA
GAATAAGAAAGAGAAGCGTGATGTTGTCAGCAATCAAATTATCGT
Found at i:272161 original size:21 final size:21
Alignment explanation
Indices: 272137--272198 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
272127 TTCCTTGTTT
*
272137 ACGTAGCTCTTCTGTTGGATC
1 ACGTAGCTCTTCCGTTGGATC
* * *
272158 ACGTAGCCCCTCCGTTGGATT
1 ACGTAGCTCTTCCGTTGGATC
* * *
272179 ACGTTGCTCTGCCCTTGGAT
1 ACGTAGCTCTTCCGTTGGAT
272199 TACTTGAGTC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.13, C:0.29, G:0.24, T:0.34
Consensus pattern (21 bp):
ACGTAGCTCTTCCGTTGGATC
Left flanking sequence: Indices 271637 -- 272136
AACAAAACACATAACTTACGTACCCATTGTACTTAGAGCCAATAAACTACCAAGAATCTTCTGTC
TCAACCACTTTCTTATTGTCTTTACATCGATTTCTAAATATAGGAAGGGAAAGTAACGGAGAGCA
AGCAAAAGAAATAAATCTATCAACGACCGACTTCGGACTAGAATCTAGAAACATACCTAAGGGAA
GAAAGCATATTTGAGGTTTACTCCTTCCATGTCTAGTAGGAGTGCGTGCTTCTTATCTTGACGCT
ATACATTCGGTTCAGTCAGTCCCTGAGACTTCCCAAGGTAATCTTACCAAACAAGCAACGGATTG
AGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATTCTCCACCACATCTTGCTTGGCTTGCTGA
ATCAGCATATGGATATGGATTACTTCATTGAATTTCTTGGCCCGAGCTCTTGTGATTGGTCTACT
TGGCAGGTGGAATGGATCCTTAGCAGGTTCATGTGTTCCTTGTTT
Right flanking sequence: Indices 272199 -- 272698
TACTTGAGTCATTTCTTGGTTTACTTGGCTGCTCCGCAACATGCTGGTTCCTTTTGTCATAATAC
CTAACGGCTGTGGGCAGAATGAATGAAAAAGCAGATGAAAGACACTATACATACCAATAGAATGA
TAAATTTTGAATAAAGCTAGGTGACGTCACGGCATTTGAGAACCAATTGCTTCTTTTGCTTTTCA
CCAACCTTCATGTACAATCTTATTTCGTATTGGAGTACAGCCTATCGTAGGCCCAGCAAAGGCAA
GACGGAAAGCAAGCATTAAGTGAAGAAGCAAGGTCCAAACAAAGTAGTGAAAGATTTACATTGAA
AAGCTTCTCCATGTCTATATCTGTCCGATGGACCAAGCAAGTTCAAAGGAAACGGCTTCTCTACT
GCATAAAAAAACCAATCCAATGAAAAGGTTAACGATTCCTATAAATTGAGAAAGAAGCATGTTCT
TCATGCCCAAAAGCGGATAAAGTAGATGGAACCTGTTCTCTAACC
Found at i:285207 original size:23 final size:23
Alignment explanation
Indices: 285179--285224 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
285169 ATCTTTCTAT
285179 TATATATATAAATATGAGGAGTC
1 TATATATATAAATATGAGGAGTC
*
285202 TATATATATAAATATGATGAGTC
1 TATATATATAAATATGAGGAGTC
285225 ATGATTGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.37
Consensus pattern (23 bp):
TATATATATAAATATGAGGAGTC
Left flanking sequence: Indices 284679 -- 285178
TTCTATAATTCTTCGTCCTTTTTCTTGAGATAACGCGGAAAAGTATCTTTTTGCTATGGCGTATG
ATTTGATACTTGCCAACACGGAATAGAGACTCGCACTTGGGAACTCTTAGGAGTGGTTCTAATGT
TAGTCAGATTTACTTCTTCCTAACGCGACGAGCAGATCAGAAGTATTTCAAGGATTGTAAGGGTG
ATACCTGGAGAGAGTGTAGCAACCCAACATAGATTTTTAGTACTCTATCTTAGTATTAAGAGATG
GAAGAGAAGGAGCAAGGGAGCCTAGGATTAGGTGGTGGAATTGGAAAGGGGATAAGCAAGTTATG
TTTAAAGAGAAAATAATTAATGAGACGGAGTGGAAGTTAGGTGAGGATGCTAACTCAATGTAGAA
TGAGATGGCTCATTGTATCAGTATCACGTCAGTGGCAAAAGAAGTTTTAGGTGAATCGAGAGGAA
AGGAAACAGACTGACCGAACAAAAATAAACCTTTCATCTTTCTAT
Right flanking sequence: Indices 285225 -- 285724
ATGATTGGGTCGACCCAATCATGACTATGGGACCTTTTCTCGAGAAATGCTTTTTTTCTCGTTTA
GTACTTTACTTGTGTAAACTCTCTCTTTTTCTTTTCTTAGAGAAGCGCAGGATTCCCTTTCTTCC
CGGAACACTAATACAATCGCACTTTCTTCCTTGTCCCGCTAACCTATTATTTTTTTTAAGACAGA
ATTTTTAGCTTGAACTATCAATACTAGCCTAATTGATTGCTGGAATGGAACTTGATGTAACTGGC
AGGGACCGCTTATATAGAACGCTTGTAGGGAACCGGAAACCAACCTGCTCTGCTAGGGAAACGAC
CCCGGAGACCAGCCTGATAGACTATATCTATGAACTTCGAATAAGTCCCTACTTTCCTATCCTAA
TAAGGGTACTGGCTCGCGAATGGCCCTACAAAATGACTCTCCTAAAATCAATGTCTGGAAGTCCT
TTTAAGATAGGTTAATATAAGATATGCTATGCTTAACACTTAGGC
Found at i:286288 original size:27 final size:27
Alignment explanation
Indices: 286257--286308 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
286247 GAAATCTTCT
*
286257 GAAGATGTCTCTTCTAGTAAGAATAGA
1 GAAGATGTCTCATCTAGTAAGAATAGA
286284 GAAGATGTCTCATCTAGTAAGAATA
1 GAAGATGTCTCATCTAGTAAGAATA
286309 CACTTATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (27 bp):
GAAGATGTCTCATCTAGTAAGAATAGA
Left flanking sequence: Indices 285757 -- 286256
TCGCCATAGATTGATTGTGCAGGCAGGTAATACTCATTTTAACTAGAAAGAGGATATTATATTAT
ACATGAGTACTGGTTATAGTCACACTCCCAAACTCCCGAGAAGTCTTTTTTACTTAACTCTAGGA
CTTGCTATAAGGATGGATTGCTTTTACCCTCTATCCCGATCTCGAATTGCGCTTGGCCAGGTTGG
GCACAAACCCAGGTAGCCCCTAAACCCGGGCTCAGTCAAGAGCGGCATCTGAATCCCGCTGCAAT
CCCTCCAGCGCAGGTGGAGAAAAAGGGGCAAAATCTCAGTGGCCGACCTAATATGTTGGCTCCAC
TACCCGATTCCCCTTAATCCTCCAAGCCAATCAATGCCCCATACCCTTATCATGGTCAGTCTCAT
CTTTAGTGACTCCCGTGGTAAGGGGTCGAGGGAAGTGGTGTGGTGGGCCCCCTCACTTTTTTTGG
AAAGAAGACAGAGAAATTCTTTTGCATTTTTGGAAGAAATCTTCT
Right flanking sequence: Indices 286309 -- 286808
CACTTATTTGTGATCCTCCCTCTGTGACTGCTATTCCTATACTATCAGAACAGAAAGTAGACTAT
CCTAAGATTCGGGTTGCGATCCTCAAGGAAATAAGCTTGAATCTAAAAAAGACTATTAGAGTAGA
GTGGGGAAACTTATAGCTACCTGCTCTTTCATTGAAATGAACGAATTACTGCCAGTAATCTGAGA
ATTCATTGGTTCAAGGTGATGCCGCCTTTTGGCTTGGTTCAAGCCAGCTATCCAATTACCGTGAG
AGCTCTTGGACTGTTAGACCAAGTAAAGGTATTTGTCCCTTCCCCTTCTACTTACTTGAGAGTAG
GGAGCAAAACTAGATAAGTCTTAAGCGAAGACTGGGTTTAATGATACCCTCCCCATTCGTAACTG
CTTACAGCGGAACTTCTACTATTCATTCTATCCACTATCTCTCGACAAATGAATCTGAATCAAAG
TAGAGTAGAAGGCCAGACCTTAGGCGAATTTCGGTATCAAGAGAT
Found at i:289942 original size:25 final size:25
Alignment explanation
Indices: 289914--289969 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
289904 TTAGGTGGCA
289914 TTGGGAG-C-AGTAGATCATTTCTTTG
1 TTGGGAGCCAAGTAGATCATTTC--TG
*
289939 TTGGGAGCCAAGTAGCTCATTTCTG
1 TTGGGAGCCAAGTAGATCATTTCTG
289964 TTGGGA
1 TTGGGA
289970 TCTGCCGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 15 0.54
26 1 0.04
27 12 0.43
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.36
Consensus pattern (25 bp):
TTGGGAGCCAAGTAGATCATTTCTG
Left flanking sequence: Indices 289414 -- 289913
CCATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCACGGGAATACAACCCAAGGAATAGTGCC
GGTGCCAGTAGTCAAATAGCTCAGAGTTAGCTCTGTTCGACTCTCTTTGTTCGTAACATTATACG
TTACTCACTGGGTGCAGCTACAGCTATGGGTCGGTTCGGTAGTGAAAAGAAGATATCGGTCCTGG
CACCTTTGGCACGGGCACGCGTGGAATAGGTGATTCCGTGGTAAACAAATCCTTTGACCGGCAGG
CCGAGGGATAATCACTGGCTAACCCTCTTCCTCATCCTTTAGAGCTGGAAATACCCGGCCTAGTG
ATAGTTAGAAAGAGTTGGCCATCGGGAGAAGAGATGGAAGTTTGCACTTGACGAGATAGAAGTTT
TCTCAACTGAGTTCACTCATTAGCATGGATCCGATCCATTCAATAATCCAATTCAGAATTGCGTT
TTCTATTCAATAATATCGATCGAACAATTTCGTAGTTAGGTGGCA
Right flanking sequence: Indices 289970 -- 290469
TCTGCCGTGATAGAAAATAAAATCCATTGTTCCTTTGACAACAGTGAGTTCCGGCATGATTGCTT
ACACAAGTGGTGGATTGGATTGGATGGCGGAAGAGAGAAGAGACCCGGTCCCGGTATGAAGCAAG
CTAAGGTTCTCATCTCCCGAAAGAATAGAATGAATGGAACTGTTGAATCTCTTCTCTAGCAAGCA
TCGAAGAAAGTGTATTCATTCTCGGGTGTAGATCGGGGAATAGCTCAGGCTCTGGTTTCAGGTCT
TGCATGAGGGAAGGGAAGGTGCCGGGATAAAGGTCGGTTGAAAAGCACGGCTATACACGAGCTCA
AGCTAGTGTGTTGGCCGGTTCGCAAGGATTGAGTTGAGTGAACTGGCTTTCCTATCGAATAGAAG
GAAGTGGTGCACGGCGCTTCGGAATGTGAAATAACGTATCAAATCTCCGGGGAAAAACAGTTGAT
GTGAATGAATGAATTGAAATATGCATGCTGCATGCCACCGAGAAA
Found at i:300574 original size:18 final size:18
Alignment explanation
Indices: 300553--300605 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
300543 TTACTCATGA
*
300553 ATTATACGTGACTCGTTC
1 ATTATACGTGACTCATTC
**
300571 ATTATACGTTCCTCATTC
1 ATTATACGTGACTCATTC
300589 ATTAGT-CGTGACTCATT
1 ATTA-TACGTGACTCATT
300606 TGTTCCGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (18 bp):
ATTATACGTGACTCATTC
Left flanking sequence: Indices 300053 -- 300552
TGAAAGAATGCTATTATCCAGGTGACGACACCGCTCTATTGGCGATACGTTCTTCTTTCGAACCA
AACCAGTGAACTACAACCTATGAACTTACCATTCTGTGGAAATGAAATGAAATACAGCTAACACT
TTCTTCTGATCTTCGGGCAGTCCAATCTCATCAAGAGTAGACAATCATATCAACTCCGATATTAC
ACACTTAAAATGCTTCTCCCAAGCCCAAGTCAACCCCAACAATTCCAAGAAAGCGTATCTCCTAT
CCGGGACAAGCCTTGCTTTGGGAATATAGAGGAGTTCACACCCAGTCCAGACTTCACTGTATCTT
TCGTTTTAGGCCAGTCCAATGATACGATACGAGTGCCTAAGGCATTCCACGGTTCCTACTGGAAG
TCAAGTACCCCTCGCTAATCCAATGAGGAACTACCGGTTATATTCGTCTTTCTATTCGTCAATAT
GCTCGTAACATTAGTCGTTACTCGCTCGTTAGTAGTTACTCATGA
Right flanking sequence: Indices 300606 -- 301105
TGTTCCGAATATCAAGAAAGCATTCATGGCCTAAGGAGCATATTCTTTTGACAACGGTTTCCCTC
ACCTCCTCTGAACATACACTCTTATCACGGGCTTCAACAGACGGGATATGCTCGAAATCATACTT
GCTTGCACGGATACAGACTTGCACTTGATGGACTAAACTAATAGGTGAGTTCTCTTCTAATCTAA
AGGAAGAGTAACGAATTGGGTATTCTCAAGTATGGAAACTGCTAGGCTAGGCAATTCTAAAGTAC
CTGTCAACGGGCACATACCTCTTGACGGCTTGGGGATTCAAACTTAAGTTCCCCATGGTTTTAAC
TGAATGGCGATTCGTAAGTCCCCTATTCTCAACTATGGAATATGAGATGTTTGCATATCACGTTT
AAAAAACTATGAATTTTACTCAGTAAACTCCCCAGGCACTTTGCTAGCAGATGTTTCAGTACAGC
AAGGAACCTGAGAAGAGACCCGAGGAACCCTGTAGGTAGATAGTT
Found at i:300599 original size:36 final size:36
Alignment explanation
Indices: 300516--300602 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 36
300506 ATGCTCGTAA
* *
300516 CATTAGTCGTTACTCGCTCGTTAGTAGTTACTCATG
1 CATTAGTCGTGACTCGCTCATTAGTAGTTACTCATG
* * * *
300552 AATTA-TACGTGACTCGTTCATTA-TACGTTCCTCATT
1 CATTAGT-CGTGACTCGCTCATTAGTA-GTTACTCATG
300588 CATTAGTCGTGACTC
1 CATTAGTCGTGACTC
300603 ATTTGTTCCG
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
35 3 0.07
36 37 0.90
37 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (36 bp):
CATTAGTCGTGACTCGCTCATTAGTAGTTACTCATG
Left flanking sequence: Indices 300016 -- 300515
TATTATTCCCATGGCGACACTAATTAGTTTAGTCCAATGAAAGAATGCTATTATCCAGGTGACGA
CACCGCTCTATTGGCGATACGTTCTTCTTTCGAACCAAACCAGTGAACTACAACCTATGAACTTA
CCATTCTGTGGAAATGAAATGAAATACAGCTAACACTTTCTTCTGATCTTCGGGCAGTCCAATCT
CATCAAGAGTAGACAATCATATCAACTCCGATATTACACACTTAAAATGCTTCTCCCAAGCCCAA
GTCAACCCCAACAATTCCAAGAAAGCGTATCTCCTATCCGGGACAAGCCTTGCTTTGGGAATATA
GAGGAGTTCACACCCAGTCCAGACTTCACTGTATCTTTCGTTTTAGGCCAGTCCAATGATACGAT
ACGAGTGCCTAAGGCATTCCACGGTTCCTACTGGAAGTCAAGTACCCCTCGCTAATCCAATGAGG
AACTACCGGTTATATTCGTCTTTCTATTCGTCAATATGCTCGTAA
Right flanking sequence: Indices 300603 -- 301102
ATTTGTTCCGAATATCAAGAAAGCATTCATGGCCTAAGGAGCATATTCTTTTGACAACGGTTTCC
CTCACCTCCTCTGAACATACACTCTTATCACGGGCTTCAACAGACGGGATATGCTCGAAATCATA
CTTGCTTGCACGGATACAGACTTGCACTTGATGGACTAAACTAATAGGTGAGTTCTCTTCTAATC
TAAAGGAAGAGTAACGAATTGGGTATTCTCAAGTATGGAAACTGCTAGGCTAGGCAATTCTAAAG
TACCTGTCAACGGGCACATACCTCTTGACGGCTTGGGGATTCAAACTTAAGTTCCCCATGGTTTT
AACTGAATGGCGATTCGTAAGTCCCCTATTCTCAACTATGGAATATGAGATGTTTGCATATCACG
TTTAAAAAACTATGAATTTTACTCAGTAAACTCCCCAGGCACTTTGCTAGCAGATGTTTCAGTAC
AGCAAGGAACCTGAGAAGAGACCCGAGGAACCCTGTAGGTAGATA
Found at i:306316 original size:33 final size:33
Alignment explanation
Indices: 306274--306339 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
306264 CCAGTTCCTT
306274 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
1 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
* *
306307 CAGAGATGGAGAAGTAGCTCGGTCAGTGGAAAG
1 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
306340 TATCCGATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.39, T:0.14
Consensus pattern (33 bp):
CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
Left flanking sequence: Indices 305774 -- 306273
GGGCTAGCATGAGCGCAATCCTCATCTATGCTTTTCTCTGTGATGCGGGGGGTTAAGGAAAGCTG
GGCTGTAAAAGGGCAATTCAGTTCTTCACAACCGCTTTTAGGAGCAAACGATCCTTGCCTTAGTA
TACAAAAAGAGAGGAATGAATCATCTCGTATTTTCTTGTGGGATAACCTTCATCAGCTTTTATCT
CCAGCTACACAGCCTCTCACTCTTGTCATTACATTGCGGCAGCATTGCAGTTCTGGCACTTGTTC
AGCTCTTAGTGCATTCTCAGATGCCTCCTCATCCTGAGCTAGCCGTCACATTTTCTCGAAATCAT
GGCGACAGGAAGGGCTAAAAGAGACCTCATCTGGTCAAGAAGCAAGGGCAACATTTCAAAATCGA
GTACTAAAATATATAGTATAGCAGTATCTGATCCTTGCTTGGGAGGAATTCCTAAGAAAAGAGAG
TTCTCTCAGCCAGTGAGTTCCCTCTGCCAGACAAGCCAGTTCCTT
Right flanking sequence: Indices 306340 -- 306839
TATCCGATTGATAGTCTCCTACCCTTGGGAAGACTTCCATAAATAGAGATAGATCCCTCCGATCC
CTAAAGTAGAGGCACTCGTTTGAAGGAAGAGAAAGCCTTGGAACTACTCGTACCAAAGCCAGCCA
GTACTTTTCTTGATCGCTTATCCTCGATCTTCCAGATAGAGTTCTGAGTGCTCATTTCTTATAGA
ATCGATTTCTAACCTTAGTTGATAGACAGAGAAAGCCCTGTGCTGTGTGTGCGTATCTTCCTACG
AACTAGAGCGAAGCGGAGTAGCTTCTTTTTCCGCTTAAATCAAAGGATGGAATGTTGGACTATCA
ACCAACTGAGACTGCGCGAACTAGATAGCCGAACAGCTAAAGCAAGCAGTTACCAGACAAAGGCG
AATGAAAGGAAACACAAACCGCAAGGTCAAGATGTTTTCTAGCGGCCGTCTAGCGCATCCGTTTT
CTTGCTTGGATGAGTTCTGGAAGGGATAGAGGGATTAGGGATATT
Found at i:319337 original size:36 final size:36
Alignment explanation
Indices: 319297--319372 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
319287 GACTCCCTCG
319297 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
1 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
*
319333 TCCTCTTCCTCTGTCAATCAACCCTCGCCATTAGCA
1 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
319369 TCCT
1 TCCT
319373 TTTCTGTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.20, C:0.41, G:0.08, T:0.32
Consensus pattern (36 bp):
TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
Left flanking sequence: Indices 318797 -- 319296
TGCTTGTAACAAACAGAGCTATCTAAAGCTTGAAAGTAAGCAACAGAGCTATCTATTCCAACGTA
TTGGTCCAACTCCACGGTTCCTCTCATCTTTCTTGTCGGAGAAAGCCTGTCTTCTGAGACATCCA
TTAATCAAATTTGATCAGTAACAAAAATCGTATGTAATGAAAGAAGAGTCAGCCCTTGGGGTGGG
GCACGAGGGGGTCCCCTGTATGCAGGTCGCTACTTAACTTGACAAGCAGTGTTGCTGTGTAAGAG
ATTGTGTGGGCGCGGTTCGCGATCTCTTCTTTCCTTTCCCAACCAAATAAAGAAATGCAAAAAAC
GACTAATTCTAGACCAGAAGATCTTCTCATGTTGGATATCAGAAATAAAATGGGTGATCTTTCGG
GAGGGAGTGCCAGTAGCACCAGTTCATCGTCTTTTTTGTCTTGCAATTCTAGTCTACACTCTCAT
AGTCCTTCTTCTTCAGAAGGATTCATTTCTTTTGGGACTCCCTCG
Right flanking sequence: Indices 319373 -- 319872
TTTCTGTGAACCAGCCATCCCCTTCTTCCGTGAAAGGAGTATTCTTAACGGACAGTGGTACTCCC
TCTTCCTCTTCGTCCGTAAATCGGCCATCCCCAAACCCGACCGATGAAAGGGTCGTAGAATATCA
AGGGGCTATACGCGAGGAAATGGCCAAATTAATGCCCGGCAGGGATCACCAAGAGATTCTAGTTG
CAGCCGAACGAATACATGGGGGGAGTGCTAATATAGGATTTCTTCGATCACAGCTCCGGGATTTA
GTAGCAAATGGCACTGAAAGTGAAGCCTTCAAGTACGGAATAGCTGAGCTAGCGAATGAGAATTT
AGCGGCAAATTTCGCTGCGATGCATTTAGCGGAGAGTCCTTTGGATCAATTTGGCATTCACCCTC
TCGCTCTCGCTCTCGGTCTCGGTTTGTTCCTATTTCTAGTTTTTCTTTTTCTTGCGCTGCGGGAA
GTATGGAAAAACAGGACGAGAGCAGCATAATCGTTAGTTAGGGGT
Found at i:319972 original size:34 final size:35
Alignment explanation
Indices: 319928--320000 Score: 139
Period size: 34 Copynumber: 2.1 Consensus size: 35
319918 GTTAAGCTTG
319928 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
1 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
319963 TGCGC-TTGTTATTTGTTGTTTATGTGAGGCTGCA
1 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
319997 TGCG
1 TGCG
320001 AATGATTAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.11, C:0.12, G:0.32, T:0.45
Consensus pattern (35 bp):
TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
Left flanking sequence: Indices 319428 -- 319927
TGGTACTCCCTCTTCCTCTTCGTCCGTAAATCGGCCATCCCCAAACCCGACCGATGAAAGGGTCG
TAGAATATCAAGGGGCTATACGCGAGGAAATGGCCAAATTAATGCCCGGCAGGGATCACCAAGAG
ATTCTAGTTGCAGCCGAACGAATACATGGGGGGAGTGCTAATATAGGATTTCTTCGATCACAGCT
CCGGGATTTAGTAGCAAATGGCACTGAAAGTGAAGCCTTCAAGTACGGAATAGCTGAGCTAGCGA
ATGAGAATTTAGCGGCAAATTTCGCTGCGATGCATTTAGCGGAGAGTCCTTTGGATCAATTTGGC
ATTCACCCTCTCGCTCTCGCTCTCGGTCTCGGTTTGTTCCTATTTCTAGTTTTTCTTTTTCTTGC
GCTGCGGGAAGTATGGAAAAACAGGACGAGAGCAGCATAATCGTTAGTTAGGGGTAAGAGGGGAA
TCTTATGTCCATATTATCTAAAAAAATATATGAGTGTTAAGCTTG
Right flanking sequence: Indices 320001 -- 320500
AATGATTAACTCGTGTCTTTATGTCCATGTGAGAAGGCTAATAAATTATCTCTTTTCTTTGGTCC
GGGAAAAAGGAAGTAAGACCCTCGAGACGAGAACTACATATGGTCTGATACTGACTTCCTTGAAA
AGAGGAAGACAAGTTATGTAGGCAGTAGCCGTTCCAGAAATGCAGCGGTACCACAAGTGCTCATT
CATTGGTCCAACCTAGAAGCTACTTGGGAAGACTATGAATTGATTGCAAGTAAGTATCATGGACA
AGGAGGATTTTTAGGAGAAAGGAGATCCTCTCTCAACCCAATAGATGCAATGTAGGAAGACTAGT
ATCTTTAGTCCATGGGTGTAACACCATAAGATGGGATTGATGGTAATCTATCATAAATCGTTTCC
CTTTTTGTCTAGATGACGTCCCCACGGTGTCTATAATTTATGTCAACCAATAAGAAATACCCGAA
AGAAGATGCGTAGGCCTTCAATCATGGTGCAATGAATATCGTAGA
Found at i:322393 original size:7 final size:7
Alignment explanation
Indices: 322381--322446 Score: 114
Period size: 7 Copynumber: 9.1 Consensus size: 7
322371 AGAAAACGCG
322381 TATAGTA
1 TATAGTA
322388 TATAGTA
1 TATAGTA
322395 TATAGTA
1 TATAGTA
322402 TATAGTA
1 TATAGTA
322409 TATAGTA
1 TATAGTA
322416 TATAGTA
1 TATAGTA
322423 TATAGTA
1 TATAGTA
322430 TATAGTA
1 TATAGTA
322437 GTAGTAGTA
1 -TA-TAGTA
322446 T
1 T
322447 CATTGGCCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
7 49 0.86
8 3 0.05
9 5 0.09
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.42
Consensus pattern (7 bp):
TATAGTA
Left flanking sequence: Indices 321881 -- 322380
CCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAA
ACATATAAAAAAAGATCGGCCTAGTCGCTCATAGGGACATATCTATCCGGATAGAGGAGAGGATA
GTCTAGATCAATTTTTAGAAAAATCTCTCTCTATATAGAATAGAATAGATAGGTATCTCTGTGGA
TAGAGATAAAGATAGGGATCCCTCGAAATATATGGAAAAAGTGCACTTTTTGACTACTACTACTA
TTTCTTATTCTTAGACGAAACATCGTTTTTTCGATTTTGACTGAATTGGTCGGAGCGTAGACGAG
CGAGCAGAGCCCAGGAAAGAGGTCAGATCGTCATAGAGCAGTCGACTATAAGTATAAGACTGCTG
GCCTGAGAGAAGGCAGTCTCTCTCGGGAAACATGGCCCAGGGTTCTATAGTATAGTATAGTAGCC
AGACTATAGGAAAATCAAGTCTCATGTTGCTCCTCAGAAAACGCG
Right flanking sequence: Indices 322447 -- 322946
CATTGGCCAAAGTAAAGTCGATGGGACAAACGCTGTTCGTTAGAACTAGCATTTTGTTTTGTCAT
GGAATCAAGTCTATTTGTTCGAATGTTCTTTTTTTCGTTTCGTTGGAAAAACCAACGCCGACGAT
TCGTCAAGAATGGATCAGTCTAGTCTCCTTTCTCTTTTGGGAGCAGAGCTGAAAAAGATGGAATT
GTCAAGTACGATGATATTTTTATTAACGGATAGAAAAATGCTATTATCAAGTAGTAAACCCATTA
TGATTGCAACTCGTGGGATGCCTGGAATCCCACTAAATCGAGAATCGGAATCGGTGGAGGATGTG
CATAGGGTACTCCGAGCCCTCCCCTTATTTAGAGAAATGGAAGGTATCTTGCGTGAGAGGAACCT
GAATCTCCCGTCAGTACAGGAAATAAGCGCTTTCCGTGTGAATCTATTCTCTGGTATCCGGCGTG
AGAGTGCGATTGCGGACTACGACGCTTTTTGGCGCTCCTTACTCG
Found at i:391044 original size:18 final size:18
Alignment explanation
Indices: 391021--391055 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
391011 CCAGAAGTGG
391021 TTACTCTTACTAATACTC
1 TTACTCTTACTAATACTC
391039 TTACTCTTACTAATACT
1 TTACTCTTACTAATACT
391056 AAGGTTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.46
Consensus pattern (18 bp):
TTACTCTTACTAATACTC
Left flanking sequence: Indices 390521 -- 391020
ATGACCTAGCCTAGGTAGTCCTATGTTTGACCAATGCTGCCTTGTATGTCTTGATCCAAGATTTC
TCAGCAAAAAAAGACATGGGATTATTGATCAATTCACCATCCTCTTCATCTGAGTGTGCTTCCAC
TTTATCGTTTGTGGCATGTGCATTATGCAACAAGTAGATTCCTGATAAATGAACCTTCTCCACAG
GACCAGCAGGTACCTCAGCAGTCCACTACTACTACTGCTGGACAGCCTAGTTCTTCTACACCACC
AGCTATAGCTCCTAATGATCCATCATCAATCAGTTCGACTTCAGTTCCACCTACCAAGCCGAAGC
AGCCATTTCCAGAACGGTTTGAGAAGTCAAGTGAAGACAAGCAGTTTGCTAAGTTTCTTGAGATG
ATTCAAGATGCGCAGATTACCATCCCCATCCTTGATGCTGTCTTACATGTTCCGATGTATGCAAA
GTTCTTTAAGGACAAAGAAGCGAAACATTAACGAGCCAGAAGTGG
Right flanking sequence: Indices 391056 -- 391555
AAGGTTGATTTAAGTTTCTCTGGTTCTTGATTGAGTCTTTGTCTTGCAGTTGCAGGAGTGATGTC
AAACCTCTTGCTTGAGTTGTCTGTATTGGAAGTCGTGTAAGCGGCTTCTTCCGAATTTGCCTTGC
CTCCGGGTCTAGTACGTATGAAAAGATGTCAGCGTCGTGGCGATTGCCTTTCCTGGTCTGGTGGT
GAAGGATTCTATTCCCGAGCGGCTAAGGTCCAATCCGGTATTCTATTTCGTCTGTGCGAGCATTA
AAACCAACCATTGCCGACGTCCTCATATTCTCTAATTTGGCTAATCTCCGTGCATTAGCAGGTTA
AGCAAATCGATTCCAACTCAGTGGCAGATAGGCTGCAACATTTCTTTCCTAATAACTAAGACTTT
CTTTACTACTTTACCAACCCATATCACGCTAACTGATACTGTGCCTAGTGATTGATGAAGGTCAC
AGAGGAGTAAGAATAGCAAAGCCTACAAATAATGTGATAAGAGTT
Found at i:396022 original size:5 final size:5
Alignment explanation
Indices: 396014--396039 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
396004 GGTTACTACT
396014 GTAAA GTAAA GTAAA GTAAA GTAAA G
1 GTAAA GTAAA GTAAA GTAAA GTAAA G
396040 GTGCCGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.23, T:0.19
Consensus pattern (5 bp):
GTAAA
Left flanking sequence: Indices 395514 -- 396013
CTGCTTGTCAACTTTTGGACCATGGTGAGCATCACTTGATCAGATCTTAGGACTCTCTATCGAGG
AAAAACGAAATTCTGTGGTCCCGGCGAGATCAAGTTTTAGAATCTATCGTCTTCCGTTACGAGAT
ATCGTTTCTATCTATGACATTCTATGTATGCAGAGGGACCTGGCCAATGGGGAAGAAGAACTTGT
CGAAGGATCTCCATACCTAGAGGTACCGGTGATTCACCAGATCTAATCTAGAGTCGTAGTCAACG
TCTTTAGGAAAGATGAGTGACCTTGGCATAGGTTTGCTGCTTACGGTTTCAAGTAAAGACAGTTT
CCTATTCGTAGGTTTCAGGGTTACTCTTCTGGCTTGAAGGGTTACTCGTATTGGTTCTTCTGTTT
GCTGGTCCAGAAAGGGAAAAGGTTGATTACTCATTGGCTAAAGGGAAGGTTGATTACTCATTGGC
TGGCTGTGCTAGTGAACTACCTCCAACTATGGTATGGTTACTACT
Right flanking sequence: Indices 396040 -- 396539
GTGCCGGAAATAATCTAGTATTTTCCTCACCTCAGTAGGAAGGATTTGTGGTTCCTCATAGCATT
TCCACCATATGTTGCATTTCTGTATTCGAATTTGAGATAGCGAGTCAAGGTATTCTTCCTCAGTC
TCGTATTCTCCATTCGAAGCGCCGTGTATTCGTTCTCTGTTCCGGAGAAAGCACTCGTTTCGTTT
GTTCCGGCTCGTGATTCGCGTATTGGTATTGTTCAGTTCGCTAGGATAGTGGGAACTGACACATT
GATTCGTAGCAGAAGCGCCGTATGCCATTCCATACAAAGCAGTGGTCAAAATCGATTCCTCGTAT
TCTGGTTCTGGTTCTGGGAAACAGGTCTTTCGTATCGAGAAGTGATAAGTCTTTGGTAATCTTGG
TAATCAGAAGTGGCAACTCGGCAATCGTCCAAGGAAGATTCATAGGATTGGTCTCTTAGGAAAAC
AAGCATCTCAATCAAGTATCAAGTCAAAGTCATCTGAGTTCCCGC
Found at i:405124 original size:5 final size:5
Alignment explanation
Indices: 405115--405159 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
405105 AGCCACGACT
* * *
405115 TAGTT TAGTT TAGTT TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA
1 TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA
405160 CTACGAGGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (5 bp):
TAGTA
Left flanking sequence: Indices 404615 -- 405114
ACTGGGTCAACTAGTCATGGTATAGTTGTTTACATGGTAGCTGGTTGGATCGACAGACCAGAGAA
AAGAGATTCTGGGTCATCCCCATGAGCTGATACAGCTCTTGTTTGGATCGCCTTCTGGGCAGCTA
ACTAAGGAAAGGATTATCGGGATTAATTCCAATTGTGGGTTGAGAAGGATGGCAAGCTGGTTACT
CAAATTGGAGATACCCTGTTCTAGGAATGAAAGGGTTCATCACCCCGGAACGAGGTAAAGGGCTA
CCCCTTGACCGAGTGAAGGCGAGCCTGGATCCTGAGATTGATGGATGATGGAATGGATCCAACCG
CGAGGTACCCATTCTAACCATGAAGGGTAAAGGAGCCAAGCAAGCTATCAGGCTGATACACCACT
TGGTTATCTTCTTTAAGATCATCTCTCTTTCCTGCATTCTTAGCTAACTCGGCTTTTTAGTCAAA
TCGCTAAGGGTAAGCTGCTTTCGGGCTAGCTTGTAAGCCACGACT
Right flanking sequence: Indices 405160 -- 405659
CTACGAGGATTCTGGCGGGGAAATGCGCAGCGGAAAAAGGGAGAAATGTTCTTTCCAATGAAGAA
GGCCGCTAAGGTTGGCTTTCTTTCCTCCATCATTACTGATGTTTTTAGCTTCTAAATGGAATCTG
AGGAAGGGAATAGCTCTTGTTCATTAGCTCTTGTAAGAAAGAGTGGAAACCACATAGCAATAAGC
ATCTCCTTACTAGGCGGTCTAGTTCACACAGACAGTGCTTACTTAAGATGGATCAATTGACCTGT
CTTGGTTTTCTAACAATTGCTTACTCTGCTGCTTTCGATTTGTGAGCCAGGTATATTCTATTTGT
ATGTATTTGCAAAATGCCTATGTCTCTAATTTCTGCTTCTTAGGTTGCTGGCGTTGGCCCCAACT
GAGTCGGCTCCATACATCCAACAGATGAATGGCTAACTCATACCGCCCCGGCAAGGAATGGCTCG
CTCTTTCCTAAAGCTGAGGTGAGGGGATGAGCCATTCCTCTCAAA
Found at i:407347 original size:5 final size:5
Alignment explanation
Indices: 407339--407392 Score: 101
Period size: 5 Copynumber: 11.0 Consensus size: 5
407329 TCAATCTACT
407339 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG
1 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG
407389 -TAGG
1 ATAGG
407393 TAGAGAGTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.08
5 45 0.92
ACGTcount: A:0.39, C:0.00, G:0.41, T:0.20
Consensus pattern (5 bp):
ATAGG
Left flanking sequence: Indices 406839 -- 407338
TGAACAATAGACTCTAGCCCCACCAGGTAATCTGGGGCTTTAAAGGGCGACCCGCTTAACTTTAC
TGAAATGAGGTAGCTAGAGAAAATCCATGAAATGGGTTGGAATTAAGATGTGCGCGCACTTCTTC
TCAAAAGAACTACTAGGCAGGCCATCCAGGTAGGCGGGTAATTCTCTCCGTATGGCTGGAAATGC
ATGCTCTCACTTCGAGTTTCAATTCAATCTTATCGCAAACGCACTACTATGCTATAGCTATATCT
AGGAAAAGCGGCAATACAAAGCCAAGATCTTCCTTACTAAACTTAACTCATAAGTTTAAGTTAAT
GAGGGCTAATCCGTCCGCAGTTTTCAACTGGTAAAGCTTTCCCTGTCTCTTCGGGACAAATAAAA
GAAAAAGTAAATGCAAGACAACCTGAAAGGAATTCCTATGTATGAGTTAGTTCGATTCCATACTC
GGACTGGTATATATAAGTGCTCATCACTACTCGACTCAATCTACT
Right flanking sequence: Indices 407393 -- 407892
TAGAGAGTAATTCTCCGAAAGAACTACTAGTAAAATATGTAGGTAGGGCTTGGGCAAGTAAGTAA
AGTAGGCATGAGTTATCTTTTCCTACGGCCTACCGAGTCAATCTATTCGGACAAGTAAATAAGTC
TGGGCATTCCTTCACTTCAGGTAATTCGATAAGTAACTACGTTCATTCAATGCTAGGGCTCTCCA
CTTTTTGTGAAATTACAAGGGGGAAAAATGCTCTCTATCTATTCCAATATAGACTTGTTTGTGGA
CCTACCTTCTTTTAGTTAGCAAGTTCGTAAGGCAATACAAATCCAAAAAAGCTAGGAATTGAACC
AACCCACTTGAAATTCTCGTAAAGAGAGAGAGAGTGTTGTTTTCTAAAACTGGATATTTTATAGC
CATTTTCAGTGCATCTAGATCGTGCGGGCTCTTTCTTAATTTCATGTCCGTCCCGGCTACTCAAA
ACTCTGATTCAGGAAAGAAATGCTAAACAAAGAAATGAGCAAACG
Found at i:411515 original size:5 final size:5
Alignment explanation
Indices: 411505--411531 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
411495 CAATTTTCAA
411505 TATAG TATAG TATAG TATAG TATAG TA
1 TATAG TATAG TATAG TATAG TATAG TA
411532 AAGATGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 411005 -- 411504
GAAACATTCGATAAGTTATACGTTACAAACTAACACTGCGGGCACAACTTCATCGTGGTTCGACT
CTGCGATTACTCGACTCTCTCCTCGATTCTGTTGTCCCTTGCCGCCTTAGGGTGAGTAAGCGGCT
CTAGTCTCTCTCTCCTTTACGATCTTAGTCGAGATCTCCCTGCTTAACCCCTTTCAAGATGTTTT
GTTATGTGTTACCTTTTTTTCCCAGAATGATCGGCCTCCATGGAGGGTCCTTACCTCAACATGGC
CATCATACAGGTAAACAAACTTTTCATCGTTATGAGTGATAAAATACGAATTATTTATATAATCG
ATATATTCAACAGATCCTTCTAGTTGGTTTGTAGATAATAGACTTTGAAGACCTTCTAGGTTACA
TACAAAATCATCGTACTTGAAGGCTATAAATACTTCGTTATACCAACGGCTATATTGTACTCCTG
GATACCATTTATCAAACACTGTATCAATTCAATTTCAATTTTCAA
Right flanking sequence: Indices 411532 -- 412031
AAGATGAAATAGAACTTTAGTTAGTTCTCCTACGGGAGAGACCCATGGGTAATTTATCATATTAT
GATTCTGAATAGAATAGATTGGTAGACTAACAACCTGTCCGGTTAGATCTTTTATAAGACCATCG
GGGATAATACCATCAATATATGCTAATATATCAGTTTGATTTGTATGATAGAAACTATCACTCAA
CTGTATTGTATCTTTACAAGTGCTTTAACGTTATTCTGTTCACCTAAGCCTTTATAGTGGCCTTC
CTTGAGATCCCTCAACTTAGTGAGTTGCGGGGGTGTGTAATATCCATATCCATCTACTAAGACTA
AGACGGTGTTTAATAACACTTTTGCTAACGCGTAGAAGTGCATCAGATGCAAATCTACACTTATA
GACATGTAAATCATCACCGTTCACACATTCTGTGGTTAAGACCCCTCTATCTTCTTCCATTTCCA
TTTCCATAGTAACTAACTGATAGAGGAAATTCTCTTTCTTTAAAT
Found at i:420646 original size:6 final size:6
Alignment explanation
Indices: 420628--420664 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
420618 AAGCTGTTCC
420628 TAACCA T-ACCA TAACCA TAACCA TAACCA TAACCA TA
1 TAACCA TAACCA TAACCA TAACCA TAACCA TAACCA TA
420665 GTATTTTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (6 bp):
TAACCA
Left flanking sequence: Indices 420128 -- 420627
TGCCAGAACTACTACTAAATGCCAATGCTAGTGCTAAGCTTCAAGTACTACTCAGAAATCTTATG
CATAGGAAATCCTATCTATATAGATAGTGGTTTCGTTATCCTCAAGTCACTCAATAAACTCTTTC
CTACTTTCGTTAGACTTCTATCGGGTAGCTGCTTACACCTACTTTCCTATTAAAAATTGCTGCTA
CTCCCTATGTTTCCTATTTTTGCGGCTACCTCCCTAGTGAGTGAGTCCTCCCACCCAAGCTAGAA
ACCTATACCCAAGTTAACTCCTTTCTACTATTTGTTTTCGTTCTTATACTGATTGCTGTTTTTCA
CTGTCTCCTATTCATGCTTAGCGCCCTGGGTATCCTTTGAAACTAGGCCGGCTATCAATAGTTGG
ATATGAAGTAAGTGAAGAGCGAAGTCATTAAGAAAGAAAAAAGGGTTTCTAATATTTCAGTGAAT
AAGCCTGAAAGAAATTGCACTTGTTGAGATAAGTCAAGCTGTTCC
Right flanking sequence: Indices 420665 -- 421164
GTATTTTAGATCTCAGTCGGTCCACTCAAGCTTACCAGATTGTTTGTAAGGTCTCGCGCATCGTT
GATACTTGGATGTTAGTGGTTCAAAGATAAGAACTATTCGAAATTAATTCAAAAGGAATGAGTTT
TTTTGAGTTACGTCTGTGACCTCGGGAAAGTCATCTGCTACTCTGCTTCTCGACACGAAAGCAGG
GCAATGCTCCATTTTTGATAATTCGTCCTACCCTTAGCTTTGCTACTTGACTCGGAACAACGGTT
CGGAGTTCGCCAGAATACGACGACATGCTGAGTTCTCAACGACTAGCATGAATTGAAGGACGCTG
ATTGCCGTTGTACCTATTGATAAAGGATTGGACAACTCGACACGGACTACGCAACGGGCTTCAAG
GAATTGAAGAATCAACTAGTCACTACGCTGCATACTCGTACCAGGGAATGTTGCAGACCGACCTT
CGTTGCTGGGCTGGAATAGAAACTGACGTATGGAGGACTTGTGAG
Found at i:436355 original size:21 final size:21
Alignment explanation
Indices: 436315--436355 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
436305 TCCGTCGATC
* *
436315 CACAACTTTGGATGCCCAATG
1 CACAACTTTGGATACACAATG
436336 CACAACTTTGGATACACAAT
1 CACAACTTTGGATACACAAT
436356 CATACACAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (21 bp):
CACAACTTTGGATACACAATG
Left flanking sequence: Indices 435815 -- 436314
TGTCGATACCCGGGGGCCTTATCAAGGGATTCATTCTTTTTTGCACTAATGGAGGGCTCTCTTAT
GTTCTACACAAATGAGTAACGTATAACGTGTAGAATCTACGTTACTCACTTGCTCGCATTCATTA
TCTCTTTCTAGCGCGAAAGCTAAAGCGCATCCGTTTTCTTACTCTGAACAGGCAGGATTTCTTGA
TAGCTATCAAGCCGTTGCGGCGCATCCTCTTGCTGGGTGCCGGGCAAATTATCTATGTTACAGTC
TATTAAAAAAAGGACTTCTAATAAGAAATTCTTCCGCTAAAGAATAGGCTCGCCTATAAATAGAA
GCTTCGGCGCACTCTCCATTTTGCGGGACAAGTGCCGAGTCAAAGCGATGGATATCGCAGCAAGA
CTCGCCATAATACCTCAGGAACAGCAGGCTCTAGAAAACGATAAGCTTGCATTACTGCAAAGAAA
GTTTAGATTTCCTTCAGGACCCCCTGTTTCTCTATTCCGTCGATC
Right flanking sequence: Indices 436356 -- 436855
CATACACAGGATGTTCGGAGGCAAATCCGCATTCTTGAAATGCGGAAGAGGGCGCTGCTGGAAGA
ACAGCAATCGCTCATCGTGAAGGCTGCCCTCCGCGGTGACCGTAGATCCTGAAAAATAGAAAAAA
GTAGTTACTCGTCTATCTCAACGTAAATGAACGAAGTCACTTAAGTCTTCCTACTACTGCTCCTT
CTTACTTATTTTCGTTTTTTCAGGATCTAAAGAAGAAGAGGTTTTCTTAGCGGGCGTGAATCCGG
TAGCTTCTACTTCTGTTCTGTTGTCTCACTTATGAGGAGCTGGTACTTCCTGATCAAGAGTGTAG
TGAGCATAAGTATTGTATTGTTCAGTATTTTCTTTTCAGGTGTGGTGTGTAGAGATATTGCCTTT
ATGAATAATACTTATGTATTGCCTCTTCTTCTTGTTTATGAATAATACTTATGTATTGCCTCTTC
TTCTTGTTGTAGAAGAATACTGATGTATTGCAAAGACCTGTTGTT
Found at i:436793 original size:37 final size:37
Alignment explanation
Indices: 436743--436841 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
436733 AGATATTGCC
436743 TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
1 TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
436780 TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
1 TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
* *
436817 TTGTA-GAAGAATACTGATGTATTGC
1 TT-TATGAATAATACTTATGTATTGC
436842 AAAGACCTGT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 57 0.97
38 2 0.03
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.47
Consensus pattern (37 bp):
TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
Left flanking sequence: Indices 436243 -- 436742
CGATAAGCTTGCATTACTGCAAAGAAAGTTTAGATTTCCTTCAGGACCCCCTGTTTCTCTATTCC
GTCGATCCACAACTTTGGATGCCCAATGCACAACTTTGGATACACAATCATACACAGGATGTTCG
GAGGCAAATCCGCATTCTTGAAATGCGGAAGAGGGCGCTGCTGGAAGAACAGCAATCGCTCATCG
TGAAGGCTGCCCTCCGCGGTGACCGTAGATCCTGAAAAATAGAAAAAAGTAGTTACTCGTCTATC
TCAACGTAAATGAACGAAGTCACTTAAGTCTTCCTACTACTGCTCCTTCTTACTTATTTTCGTTT
TTTCAGGATCTAAAGAAGAAGAGGTTTTCTTAGCGGGCGTGAATCCGGTAGCTTCTACTTCTGTT
CTGTTGTCTCACTTATGAGGAGCTGGTACTTCCTGATCAAGAGTGTAGTGAGCATAAGTATTGTA
TTGTTCAGTATTTTCTTTTCAGGTGTGGTGTGTAGAGATATTGCC
Right flanking sequence: Indices 436842 -- 437341
AAAGACCTGTTGTTGTTTTATTTCTTTATTTCTTCCTTTTCTCGAATAGTAGTTGTTAGCTTTGT
CTCTAGCATGTTGGTTTGCTTCTAGCATTTAGTAGAATAAGTTGCATTAGCAAGTTCATCATTTA
ATAGAAGATCAAGAAAATGAAAGATCAATGAGATACCTGTCCGGATAGTTGGGAGAGTGAGCTCT
GCCCTTAAGACAATCAGAGACTGAGTGATGCCGCGGAGAATAGAGATATGTCAGTTGGGTAGAGA
AGGATTCAGAGGTATAGTAAAGTAGCCAAGCAAGCTATCGTGAGCAGGAATCAATCCTGAAAGAG
AGATGAGAGTAAGCATCCCGCAGTCCACCGTGCTTGGAACTGAGTCCCGCCGAAAGAGGTTATTC
TTTTTGGCTTGAACTGCTTTGAACTAGCGGTTTTATTTCTATTCACGAGAGTACTTCGCCTGTGC
TGCTTCCCGTAAGCGAAAGTCACTCTCGCTTAACGATATGAGTTC
Found at i:447227 original size:18 final size:18
Alignment explanation
Indices: 447206--447258 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
447196 TTACTCATGA
*
447206 ATTATACGTGACTCGTTC
1 ATTATACGTGACTCATTC
**
447224 ATTATACGTTCCTCATTC
1 ATTATACGTGACTCATTC
447242 ATTAGT-CGTGACTCATT
1 ATTA-TACGTGACTCATT
447259 TGTTCCGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (18 bp):
ATTATACGTGACTCATTC
Left flanking sequence: Indices 446706 -- 447205
TGAAAGAATGCTATTATCCAGGTGACGACACCGCTCTATTGGCGATACGTTCTTCTTTCGAACCA
AACCAGTGAACTACAACCTATGAACTTACCATTCTGTGGAAATGAAATGAAATACAGCTAACACT
TTCTTCTGATCTTCGGGCAGTCCAATCTCATCAAGAGTAGACAATCATATCAACTCCGATATTAC
ACACTTAAAATGCTTCTCCCAAGCCCAAGTCAACCCCAACAATTCCAAGAAAGCGTATCTCCTAT
CCGGGACAAGCCTTGCTTTGGGAATATAGAGGAGTTCACACCCAGTCCAGACTTCACTGTATCTT
TCGTTTTAGGCCAGTCCAATGATACGATACGAGTGCCTAAGGCATTCCACGGTTCCTACTGGAAG
TCAAGTACCCCTCGCTAATCCAATGAGGAACTACCGGTTATATTCGTCTTTCTATTCGTCAATAT
GCTCGTAACATTAGTCGTTACTCGCTCGTTAGTAGTTACTCATGA
Right flanking sequence: Indices 447259 -- 447758
TGTTCCGAATATCAAGAAAGCATTCATGGCCTAAGGAGCATATTCTTTTGACAACGGTTTCCCTC
ACCTCCTCTGAACATACACTCTTATCACGGGCTTCAACAGACGGGATATGCTCGAAATCATACTT
GCTTGCACGGATACAGACTTGCACTTGATGGACTAAACTAATAGGTGAGTTCTCTTCTAATCTAA
AGGAAGAGTAACGAATTGGGTATTCTCAAGTATGGAAACTGCTAGGCTAGGCAATTCTAAAGTAC
CTGTCAACGGGCACATACCTCTTGACGGCTTGGGGATTCAAACTTAAGTTCCCCATGGTTTTAAC
TGAATGGCGATTCGTAAGTCCCCTATTCTCAACTATGGAATATGAGATGTTTGCATATCACGTTT
AAAAAACTATGAATTTTACTCAGTAAACTCCCCAGGCACTTTGCTAGCAGATGTTTCAGTACAGC
AAGGAACCTGAGAAGAGACCCGAGGAACCCTGTAGGTAGATAGTT
Found at i:447252 original size:36 final size:36
Alignment explanation
Indices: 447169--447255 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 36
447159 ATGCTCGTAA
* *
447169 CATTAGTCGTTACTCGCTCGTTAGTAGTTACTCATG
1 CATTAGTCGTGACTCGCTCATTAGTAGTTACTCATG
* * * *
447205 AATTA-TACGTGACTCGTTCATTA-TACGTTCCTCATT
1 CATTAGT-CGTGACTCGCTCATTAGTA-GTTACTCATG
447241 CATTAGTCGTGACTC
1 CATTAGTCGTGACTC
447256 ATTTGTTCCG
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
35 3 0.07
36 37 0.90
37 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (36 bp):
CATTAGTCGTGACTCGCTCATTAGTAGTTACTCATG
Left flanking sequence: Indices 446669 -- 447168
TATTATTCCCATGGCGACACTAATTAGTTTAGTCCAATGAAAGAATGCTATTATCCAGGTGACGA
CACCGCTCTATTGGCGATACGTTCTTCTTTCGAACCAAACCAGTGAACTACAACCTATGAACTTA
CCATTCTGTGGAAATGAAATGAAATACAGCTAACACTTTCTTCTGATCTTCGGGCAGTCCAATCT
CATCAAGAGTAGACAATCATATCAACTCCGATATTACACACTTAAAATGCTTCTCCCAAGCCCAA
GTCAACCCCAACAATTCCAAGAAAGCGTATCTCCTATCCGGGACAAGCCTTGCTTTGGGAATATA
GAGGAGTTCACACCCAGTCCAGACTTCACTGTATCTTTCGTTTTAGGCCAGTCCAATGATACGAT
ACGAGTGCCTAAGGCATTCCACGGTTCCTACTGGAAGTCAAGTACCCCTCGCTAATCCAATGAGG
AACTACCGGTTATATTCGTCTTTCTATTCGTCAATATGCTCGTAA
Right flanking sequence: Indices 447256 -- 447755
ATTTGTTCCGAATATCAAGAAAGCATTCATGGCCTAAGGAGCATATTCTTTTGACAACGGTTTCC
CTCACCTCCTCTGAACATACACTCTTATCACGGGCTTCAACAGACGGGATATGCTCGAAATCATA
CTTGCTTGCACGGATACAGACTTGCACTTGATGGACTAAACTAATAGGTGAGTTCTCTTCTAATC
TAAAGGAAGAGTAACGAATTGGGTATTCTCAAGTATGGAAACTGCTAGGCTAGGCAATTCTAAAG
TACCTGTCAACGGGCACATACCTCTTGACGGCTTGGGGATTCAAACTTAAGTTCCCCATGGTTTT
AACTGAATGGCGATTCGTAAGTCCCCTATTCTCAACTATGGAATATGAGATGTTTGCATATCACG
TTTAAAAAACTATGAATTTTACTCAGTAAACTCCCCAGGCACTTTGCTAGCAGATGTTTCAGTAC
AGCAAGGAACCTGAGAAGAGACCCGAGGAACCCTGTAGGTAGATA
Found at i:452969 original size:33 final size:33
Alignment explanation
Indices: 452927--452992 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
452917 CCAGTTCCTT
452927 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
1 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
* *
452960 CAGAGATGGAGAAGTAGCTCGGTCAGTGGAAAG
1 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
452993 TATCCGATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.39, T:0.14
Consensus pattern (33 bp):
CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
Left flanking sequence: Indices 452427 -- 452926
GGGCTAGCATGAGCGCAATCCTCATCTATGCTTTTCTCTGTGATGCGGGGGGTTAAGGAAAGCTG
GGCTGTAAAAGGGCAATTCAGTTCTTCACAACCGCTTTTAGGAGCAAACGATCCTTGCCTTAGTA
TACAAAAAGAGAGGAATGAATCATCTCGTATTTTCTTGTGGGATAACCTTCATCAGCTTTTATCT
CCAGCTACACAGCCTCTCACTCTTGTCATTACATTGCGGCAGCATTGCAGTTCTGGCACTTGTTC
AGCTCTTAGTGCATTCTCAGATGCCTCCTCATCCTGAGCTAGCCGTCACATTTTCTCGAAATCAT
GGCGACAGGAAGGGCTAAAAGAGACCTCATCTGGTCAAGAAGCAAGGGCAACATTTCAAAATCGA
GTACTAAAATATATAGTATAGCAGTATCTGATCCTTGCTTGGGAGGAATTCCTAAGAAAAGAGAG
TTCTCTCAGCCAGTGAGTTCCCTCTGCCAGACAAGCCAGTTCCTT
Right flanking sequence: Indices 452993 -- 453492
TATCCGATTGATAGTCTCCTACCCTTGGGAAGACTTCCATAAATAGAGATAGATCCCTCCGATCC
CTAAAGTAGAGGCACTCGTTTGAAGGAAGAGAAAGCCTTGGAACTACTCGTACCAAAGCCAGCCA
GTACTTTTCTTGATCGCTTATCCTCGATCTTCCAGATAGAGTTCTGAGTGCTCATTTCTTATAGA
ATCGATTTCTAACCTTAGTTGATAGACAGAGAAAGCCCTGTGCTGTGTGTGCGTATCTTCCTACG
AACTAGAGCGAAGCGGAGTAGCTTCTTTTTCCGCTTAAATCAAAGGATGGAATGTTGGACTATCA
ACCAACTGAGACTGCGCGAACTAGATAGCCGAACAGCTAAAGCAAGCAGTTACCAGACAAAGGCG
AATGAAAGGAAACACAAACCGCAAGGTCAAGATGTTTTCTAGCGGCCGTCTAGCGCATCCGTTTT
CTTGCTTGGATGAGTTCTGGAAGGGATAGAGGGATTAGGGATATT
Found at i:465990 original size:36 final size:36
Alignment explanation
Indices: 465950--466025 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
465940 GACTCCCTCG
465950 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
1 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
*
465986 TCCTCTTCCTCTGTCAATCAACCCTCGCCATTAGCA
1 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
466022 TCCT
1 TCCT
466026 TTTCTGTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.20, C:0.41, G:0.08, T:0.32
Consensus pattern (36 bp):
TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
Left flanking sequence: Indices 465450 -- 465949
TGCTTGTAACAAACAGAGCTATCTAAAGCTTGAAAGTAAGCAACAGAGCTATCTATTCCAACGTA
TTGGTCCAACTCCACGGTTCCTCTCATCTTTCTTGTCGGAGAAAGCCTGTCTTCTGAGACATCCA
TTAATCAAATTTGATCAGTAACAAAAATCGTATGTAATGAAAGAAGAGTCAGCCCTTGGGGTGGG
GCACGAGGGGGTCCCCTGTATGCAGGTCGCTACTTAACTTGACAAGCAGTGTTGCTGTGTAAGAG
ATTGTGTGGGCGCGGTTCGCGATCTCTTCTTTCCTTTCCCAACCAAATAAAGAAATGCAAAAAAC
GACTAATTCTAGACCAGAAGATCTTCTCATGTTGGATATCAGAAATAAAATGGGTGATCTTTCGG
GAGGGAGTGCCAGTAGCACCAGTTCATCGTCTTTTTTGTCTTGCAATTCTAGTCTACACTCTCAT
AGTCCTTCTTCTTCAGAAGGATTCATTTCTTTTGGGACTCCCTCG
Right flanking sequence: Indices 466026 -- 466525
TTTCTGTGAACCAGCCATCCCCTTCTTCCGTGAAAGGAGTATTCTTAACGGACAGTGGTACTCCC
TCTTCCTCTTCGTCCGTAAATCGGCCATCCCCAAACCCGACCGATGAAAGGGTCGTAGAATATCA
AGGGGCTATACGCGAGGAAATGGCCAAATTAATGCCCGGCAGGGATCACCAAGAGATTCTAGTTG
CAGCCGAACGAATACATGGGGGGAGTGCTAATATAGGATTTCTTCGATCACAGCTCCGGGATTTA
GTAGCAAATGGCACTGAAAGTGAAGCCTTCAAGTACGGAATAGCTGAGCTAGCGAATGAGAATTT
AGCGGCAAATTTCGCTGCGATGCATTTAGCGGAGAGTCCTTTGGATCAATTTGGCATTCACCCTC
TCGCTCTCGCTCTCGGTCTCGGTTTGTTCCTATTTCTAGTTTTTCTTTTTCTTGCGCTGCGGGAA
GTATGGAAAAACAGGACGAGAGCAGCATAATCGTTAGTTAGGGGT
Found at i:466625 original size:34 final size:35
Alignment explanation
Indices: 466581--466653 Score: 139
Period size: 34 Copynumber: 2.1 Consensus size: 35
466571 GTTAAGCTTG
466581 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
1 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
466616 TGCGC-TTGTTATTTGTTGTTTATGTGAGGCTGCA
1 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
466650 TGCG
1 TGCG
466654 AATGATTAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.11, C:0.12, G:0.32, T:0.45
Consensus pattern (35 bp):
TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
Left flanking sequence: Indices 466081 -- 466580
TGGTACTCCCTCTTCCTCTTCGTCCGTAAATCGGCCATCCCCAAACCCGACCGATGAAAGGGTCG
TAGAATATCAAGGGGCTATACGCGAGGAAATGGCCAAATTAATGCCCGGCAGGGATCACCAAGAG
ATTCTAGTTGCAGCCGAACGAATACATGGGGGGAGTGCTAATATAGGATTTCTTCGATCACAGCT
CCGGGATTTAGTAGCAAATGGCACTGAAAGTGAAGCCTTCAAGTACGGAATAGCTGAGCTAGCGA
ATGAGAATTTAGCGGCAAATTTCGCTGCGATGCATTTAGCGGAGAGTCCTTTGGATCAATTTGGC
ATTCACCCTCTCGCTCTCGCTCTCGGTCTCGGTTTGTTCCTATTTCTAGTTTTTCTTTTTCTTGC
GCTGCGGGAAGTATGGAAAAACAGGACGAGAGCAGCATAATCGTTAGTTAGGGGTAAGAGGGGAA
TCTTATGTCCATATTATCTAAAAAAATATATGAGTGTTAAGCTTG
Right flanking sequence: Indices 466654 -- 467153
AATGATTAACTCGTGTCTTTATGTCCATGTGAGAAGGCTAATAAATTATCTCTTTTCTTTGGTCC
GGGAAAAAGGAAGTAAGACCCTCGAGACGAGAACTACATATGGTCTGATACTGACTTCCTTGAAA
AGAGGAAGACAAGTTATGTAGGCAGTAGCCGTTCCAGAAATGCAGCGGTACCACAAGTGCTCATT
CATTGGTCCAACCTAGAAGCTACTTGGGAAGACTATGAATTGATTGCAAGTAAGTATCATGGACA
AGGAGGATTTTTAGGAGAAAGGAGATCCTCTCTCAACCCAATAGATGCAATGTAGGAAGACTAGT
ATCTTTAGTCCATGGGTGTAACACCATAAGATGGGATTGATGGTAATCTATCATAAATCGTTTCC
CTTTTTGTCTAGATGACGTCCCCACGGTGTCTATAATTTATGTCAACCAATAAGAAATACCCGAA
AGAAGATGCGTAGGCCTTCAATCATGGTGCAATGAATATCGTAGA
Found at i:469046 original size:7 final size:7
Alignment explanation
Indices: 469034--469099 Score: 114
Period size: 7 Copynumber: 9.1 Consensus size: 7
469024 AGAAAACGCG
469034 TATAGTA
1 TATAGTA
469041 TATAGTA
1 TATAGTA
469048 TATAGTA
1 TATAGTA
469055 TATAGTA
1 TATAGTA
469062 TATAGTA
1 TATAGTA
469069 TATAGTA
1 TATAGTA
469076 TATAGTA
1 TATAGTA
469083 TATAGTA
1 TATAGTA
469090 GTAGTAGTA
1 -TA-TAGTA
469099 T
1 T
469100 CATTGGCCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
7 49 0.86
8 3 0.05
9 5 0.09
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.42
Consensus pattern (7 bp):
TATAGTA
Left flanking sequence: Indices 468534 -- 469033
CCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAA
ACATATAAAAAAAGATCGGCCTAGTCGCTCATAGGGACATATCTATCCGGATAGAGGAGAGGATA
GTCTAGATCAATTTTTAGAAAAATCTCTCTCTATATAGAATAGAATAGATAGGTATCTCTGTGGA
TAGAGATAAAGATAGGGATCCCTCGAAATATATGGAAAAAGTGCACTTTTTGACTACTACTACTA
TTTCTTATTCTTAGACGAAACATCGTTTTTTCGATTTTGACTGAATTGGTCGGAGCGTAGACGAG
CGAGCAGAGCCCAGGAAAGAGGTCAGATCGTCATAGAGCAGTCGACTATAAGTATAAGACTGCTG
GCCTGAGAGAAGGCAGTCTCTCTCGGGAAACATGGCCCAGGGTTCTATAGTATAGTATAGTAGCC
AGACTATAGGAAAATCAAGTCTCATGTTGCTCCTCAGAAAACGCG
Right flanking sequence: Indices 469100 -- 469599
CATTGGCCAAAGTAAAGTCGATGGGACAAACGCTGTTCGTTAGAACTAGCATTTTGTTTTGTCAT
GGAATCAAGTCTATTTGTTCGAATGTTCTTTTTTTCGTTTCGTTGGAAAAACCAACGCCGACGAT
TCGTCAAGAATGGATCAGTCTAGTCTCCTTTCTCTTTTGGGAGCAGAGCTGAAAAAGATGGAATT
GTCAAGTACGATGATATTTTTATTAACGGATAGAAAAATGCTATTATCAAGTAGTAAACCCATTA
TGATTGCAACTCGTGGGATGCCTGGAATCCCACTAAATCGAGAATCGGAATCGGTGGAGGATGTG
CATAGGGTACTCCGAGCCCTCCCCTTATTTAGAGAAATGGAAGGTATCTTGCGTGAGAGGAACCT
GAATCTCCCGTCAGTACAGGAAATAAGCGCTTTCCGTGTGAATCTATTCTCTGGTATCCGGCGTG
AGAGTGCGATTGCGGACTACGACGCTTTTTGGCGCTCCTTACTCG
Found at i:494403 original size:34 final size:34
Alignment explanation
Indices: 494360--494424 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
494350 AAGGAACTTA
*
494360 TTTTCCATGCCCGGTATCGAGAACCTTCTCTGCC
1 TTTTCCATGCCCGGTATCGAGAACCCTCTCTGCC
494394 TTTTCCATGCCCGGTATCGAGAACCCTCTCT
1 TTTTCCATGCCCGGTATCGAGAACCCTCTCT
494425 CCCTACGACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.15, C:0.35, G:0.17, T:0.32
Consensus pattern (34 bp):
TTTTCCATGCCCGGTATCGAGAACCCTCTCTGCC
Left flanking sequence: Indices 493860 -- 494359
TATCCTCAACCCAGAGGGAGGTCTAATTATTCCTCCCTCTGGGATCAAATAAATGTCTTCCAACC
CCCACATGGAATAGGGCTCTGAGACGCACCACAGAGCACGTAGCAGCGACTTTGAAGGTTTCGAG
TCCGATACCATACCCTAAAAAGAATAAGAAGAGCCTTTCTGCTTCAATCGGCAGGGCTTCAGGAG
TGGACTTGAGACGAAAACCTCGGTCAAATGCGCCATAGTTGAGATAGAATGGCATTTACCCGTGT
TCAAGAAAATGGAAGTTTATTTAGAGGGTTGTCGCTTTGATCGATAGTGCTAGGCTGCTTAAGAC
TAAGACCGGCGTATTTCATAAGATTTCCTAAAGTTGGTTTATAGGGTCTGGGCCTAAAGAAGCAT
GGATGCCTGGAATTGCTATTTCCAATCTCAAGTCATATTTGCATTTGCGCTGAAGATTTGCGTAG
GAAAGGTGGCCAGTCTCCTCCGACTCAAAAGCCCAAAGGAACTTA
Right flanking sequence: Indices 494425 -- 494924
CCCTACGACCTTCTTTCAGGGATGCGTCTTCCTTGAATTGAATTGAACGGCACTTCGGAACTTGT
GAAATACTTTCTTATCGCCAGGGCTCAGTTTATTCGAGTATTTGTGTTGGTCCGCACTCCTATCT
CCTATCTACAGCTACCGCTATCAATTCCTATTCCCAGTTTGTTTCCTCTATCCCTTCCTAAAGTG
GCAGAAGCATTCGAGTAAGAGATCGGCATCACACTAGTGAAAGTCAAGTAACGGAAAAGCATCTC
CTAAATAAAAAGAAATCAATTAGACTAGTTTTCGAAACGATGCTCCCACAAAAGGCAAGCTTGTC
CAATACGGGTTACCTTGGCCAAAGATAGGAAAATAGATGCATCTTTTCGGAAAGGAGATACGAAC
CTTCTCCTCTTGTACAACAAACAGGCCTCCCCAAAAGGCAGAAGCATCTCCGCTTGGTTATAGGC
TGCCTTCAAGGAAATACGTGATACCCGTTCCCTTGGCTAGACTAG
Found at i:505995 original size:6 final size:6
Alignment explanation
Indices: 505984--506015 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
505974 TTGATTCTAC
505984 TATAGA TATAGA TATAGA TATAGA TATAGA TA
1 TATAGA TATAGA TATAGA TATAGA TATAGA TA
506016 CGGTGCTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
TATAGA
Left flanking sequence: Indices 505484 -- 505983
TCCATTGCGATGTCTGCCTGATCGAACTCGCCCTCGGAGGAAAAACTCTCCTCTTTCCACTCAAG
TATGTTGCACCGTATCTGGTGTGGTATCCTCTCTTTTGATATTTATGCTTACGAAAGCCCATATT
GTAAATAAAGAGCACTTCTTCCTTATCCTTATCCTTATCCTTAGTAGCTTGATTGCTGTTACACC
TGTACTGCGGATCTTTACTATACTATGGCATTGGTCAATTGAAATCGTAAGAGGTTGAGAAGATC
CTTTTCTCATCTGATGCTTTGTTGTTTGCTCCGAGACTCATAAGAGGTGAAAGAACACAATGTTA
CTACCGGATTTCAAGTGAGTGTACCGGTCTTGTCACTACAGATGGTAGTTGCCGAACCCATTGTT
GAACACGCAGCCTTCTTACCGAGAAAAAACAAAATGCTAGTTCTAACGAACAGCGTTTGTCCCAT
CGACGAAGGCTAATGAGACTTGCCTTTCTTTGCCCTTGATTCTAC
Right flanking sequence: Indices 506016 -- 506515
CGGTGCTGCAAATTCGCAAGCTGATCCTAATCCTAAGTATAAGTCAAAGTATAAGTCAAAGTAAA
ATCTTTGTCTCAAACCATCCCAGCAAGAGGATGCGCCTAGCGCTAGTTGCTCAATCCCTTGCTTG
TTTGTTTTCATAAAAAGAATGGTTCTTTTATGCAATTATGAACGGGCAGGCCTCTTGTGGATTCC
TCCAACTCCATGAATGAAGGGGGGAGTATGAGGAAGGCCGATTTTCTTTCTATATGAAGATGAAA
AAAGGATCAGGGTCAAACATTTCTGACTTTTGTTGAGTATGACTGAATGAGGAAGAGCTCCTTAT
GTGGTATCACTTTACCACCATCTGAAATGCGCGAAACTCCGATTGGTGGAAGCCAGTCCATGAAG
ATTCTCCCTTCTCTTACGTGAAATTCCCCTCTTTCGGTAAGCATCCAGTATCTCAGCAAATGAAC
ATTTCTCTAAGCTTATCCTGTAGCTTATACGTCGTTTGAAAGCTG
Found at i:506067 original size:12 final size:12
Alignment explanation
Indices: 506050--506078 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
506040 TCCTAATCCT
506050 AAGTATAAGTCA
1 AAGTATAAGTCA
506062 AAGTATAAGTCA
1 AAGTATAAGTCA
506074 AAGTA
1 AAGTA
506079 AAATCTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.24
Consensus pattern (12 bp):
AAGTATAAGTCA
Left flanking sequence: Indices 505550 -- 506049
ATGTTGCACCGTATCTGGTGTGGTATCCTCTCTTTTGATATTTATGCTTACGAAAGCCCATATTG
TAAATAAAGAGCACTTCTTCCTTATCCTTATCCTTATCCTTAGTAGCTTGATTGCTGTTACACCT
GTACTGCGGATCTTTACTATACTATGGCATTGGTCAATTGAAATCGTAAGAGGTTGAGAAGATCC
TTTTCTCATCTGATGCTTTGTTGTTTGCTCCGAGACTCATAAGAGGTGAAAGAACACAATGTTAC
TACCGGATTTCAAGTGAGTGTACCGGTCTTGTCACTACAGATGGTAGTTGCCGAACCCATTGTTG
AACACGCAGCCTTCTTACCGAGAAAAAACAAAATGCTAGTTCTAACGAACAGCGTTTGTCCCATC
GACGAAGGCTAATGAGACTTGCCTTTCTTTGCCCTTGATTCTACTATAGATATAGATATAGATAT
AGATATAGATACGGTGCTGCAAATTCGCAAGCTGATCCTAATCCT
Right flanking sequence: Indices 506079 -- 506578
AAATCTTTGTCTCAAACCATCCCAGCAAGAGGATGCGCCTAGCGCTAGTTGCTCAATCCCTTGCT
TGTTTGTTTTCATAAAAAGAATGGTTCTTTTATGCAATTATGAACGGGCAGGCCTCTTGTGGATT
CCTCCAACTCCATGAATGAAGGGGGGAGTATGAGGAAGGCCGATTTTCTTTCTATATGAAGATGA
AAAAAGGATCAGGGTCAAACATTTCTGACTTTTGTTGAGTATGACTGAATGAGGAAGAGCTCCTT
ATGTGGTATCACTTTACCACCATCTGAAATGCGCGAAACTCCGATTGGTGGAAGCCAGTCCATGA
AGATTCTCCCTTCTCTTACGTGAAATTCCCCTCTTTCGGTAAGCATCCAGTATCTCAGCAAATGA
ACATTTCTCTAAGCTTATCCTGTAGCTTATACGTCGTTTGAAAGCTGCTCCAAGGATCCAACGAA
TAGCTAAGGTTTGTTGACGATCCCTGGCTACAATCCCAGGAACAT
Found at i:507080 original size:7 final size:7
Alignment explanation
Indices: 507058--507123 Score: 114
Period size: 7 Copynumber: 9.1 Consensus size: 7
507048 TTGGCCAATG
507058 ATACTACT
1 ATACTA-T
507066 ACTACTAT
1 A-TACTAT
507074 ATACTAT
1 ATACTAT
507081 ATACTAT
1 ATACTAT
507088 ATACTAT
1 ATACTAT
507095 ATACTAT
1 ATACTAT
507102 ATACTAT
1 ATACTAT
507109 ATACTAT
1 ATACTAT
507116 ATACTAT
1 ATACTAT
507123 A
1 A
507124 CGCGTTTTCT
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
7 49 0.86
8 3 0.05
9 5 0.09
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.41
Consensus pattern (7 bp):
ATACTAT
Left flanking sequence: Indices 506558 -- 507057
TGGCTACAATCCCAGGAACATCATAAATAGTACCTGCGACTCCTACTTTGACCACTTCGCATATT
GGCTTTATATTATCTACGGCGTCAACCATAAGTTTGATTACATCGCGTTCAGTTCGAGCTAGGCG
GTGAAAAGTTTTATAAACAATAGCACGAACTCTCGTTCTTTTACCATCGATCATGCGAAAGTTTA
CCAATTTCTTGATCAATTCTTTTTGCTCACCATCAAAGTCCCCCATATAGCTGAGAATTTCCGAG
CAATTGGAAGCCGCTTTCGATGACGAGGCCGATAAATTGATATTACGCGATCGTTACTGTCCATC
TTTTTCAGCTCTGCTCCCAAAAGAGAAAGGAGACTTAAAGATCAATATGTGGGCGTAGGTTTTTC
CAACGAAACGAAAAAAAGAACATTCGAACAAATAGACTTGATTCCATGACAAAACAAAATGCTAG
TTCTAACGAACAGCGTTTGTCCCATCGACTTTACTTTGGCCAATG
Right flanking sequence: Indices 507124 -- 507623
CGCGTTTTCTGAGGAGCAACATGAGACTTGATTTTCCGTTGGTTTTTCTATTTTCTAACGAAAGT
ATTAATTAATATGCAGGATAATATAAATGGTTGGTTTTGTTCAATACTTAGGTATAGGTAGGGCT
GACTACGCCACCTCAGCAGCTGGGACTGGAATTGCTTACAATGCATCTGGCCACTGACTGAATTC
GAAGTAGGGCCAGTGTATAAAGACCGGCTTATCTCTCTTAAGACTTAGTCCACTTTCTACTAGAA
TCAGATTTTCTAGTTTGCAAGCAGGTGTGCCAGCTGTAACAAAAACTTACGGCTTAGGTGGATTT
CTTTAGTCAGTCTATAACTCAGGCTTTTCTTTATAGGACTCCCACACAAGTAAGTAGCTAGCTAG
CTGGTATTGCCAAAGCCAAAAACACTGCTGCATTCGAAAAGGCGAACCGCGCGGACCCGACTTCT
TCCTTTTATGCTGAAACTAGCCGCCGGGGGAAAAGAGCCCGGAAG
Found at i:515199 original size:5 final size:5
Alignment explanation
Indices: 515189--515232 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
515179 CTATAACTAT
515189 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGG
1 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAGG
515233 ATATTGATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (5 bp):
AAGGG
Left flanking sequence: Indices 514689 -- 515188
ATTCTCTAGGGTTCGTATCAAGCGCTAGCAAATGGAGAGGGTCAATCGAATCCGTATCCTCGAGC
GCTGGGTCTGTCCTCTAATGAGGAGCTCCTTGCTTTTTTGATCCGTGAATCCGGATCTGTACCTT
CATCTGAAAACTATTCGCCGGTTGTCCGCATTCCTCTCCTCGAGCGAAAGGTGTTCCCACGCAAT
CGCTATCGCTGTTCCTACGACGTAGTCAATACGCATTGGAATAATGGCATCCCCTCCACCGTAGT
AAAGTAAGAAGTAACGGGTCTACGCCCAGCTTCCTTGTTCGGTTCTGGTTACGGGAACGGTTGAC
TTTCGAAATAAAATACCCTTCTTCCCCGTTTTGCAAATTCACCTAGAGCTAGCGAAGCGAGTCCG
TTTCCAGCGATGAAGAGCTTTTTTATTTAATGAAATATTGGTCTACGCCCTCCTTTGATGCCCAG
AGGAAGAAAAGCGAAGGAAAGAATACTATCTATAACTATAACTAT
Right flanking sequence: Indices 515233 -- 515732
ATATTGATAAAAAATAGGAAATGGAAGTAGATGAGCGTCTGTCAGGTGCTTGTTGACATTTATAT
TGGAAAAGAGCTTTCGGTTCTATTCCTTTTTAGTTTTAAGTAAAGGCTTTTTATCGACGAATAAA
TAAGCTCTTTCTACTTTGCCTTAAAAGCTCGTCCTAAGGAAAGCAATTTGAACTTGCTTGAGAAG
ATAGCAGAAGTTCTAGTTATTACAGCTAAAGTGATAGCAACTCATGAACGAAGTGCTCGACCATA
GATAGGGAACGAGCGGAAAAAAAGTAGCGAGTGGAGCCATAGAAGAAAACTTTTTTCTTTAGGTC
AAGGTGATAGCAAACCATTTTTACAATGGCACATAGCTGGCTTCTATCTTCTATCCTATCTTATT
ATGCCGACGCCTTTCTCGGCCAAATGATAGAGGCGCTTCGGACAGGTAGAAGGACTAATTCAGTC
TATTGGTGTGGCTATCGAAACTTCTTCGTCTAGTCTAGATTGGCT
Found at i:526705 original size:40 final size:37
Alignment explanation
Indices: 526649--526747 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
526639 ACAGGTCTTT
* *
526649 GCAATACATCAGTATTCTTC-TACAACAAGAAGAAGAG
1 GCAATACATAAGTATTATTCATA-AACAAGAAGAAGAG
526686 GCAATACATAAGTATTATTCATAAACAAGAAGAAGAG
1 GCAATACATAAGTATTATTCATAAACAAGAAGAAGAG
526723 GCAATACATAAGTATTATTCATAAA
1 GCAATACATAAGTATTATTCATAAA
526748 GGCAATATCT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 57 0.97
38 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.24
Consensus pattern (37 bp):
GCAATACATAAGTATTATTCATAAACAAGAAGAAGAG
Left flanking sequence: Indices 526149 -- 526648
GAACTCATATCGTTAAGCGAGAGTGACTTTCGCTTACGGGAAGCAGCACAGGCGAAGTACTCTCG
TGAATAGAAATAAAACCGCTAGTTCAAAGCAGTTCAAGCCAAAAAGAATAACCTCTTTCGGCGGG
ACTCAGTTCCAAGCACGGTGGACTGCGGGATGCTTACTCTCATCTCTCTTTCAGGATTGATTCCT
GCTCACGATAGCTTGCTTGGCTACTTTACTATACCTCTGAATCCTTCTCTACCCAACTGACATAT
CTCTATTCTCCGCGGCATCACTCAGTCTCTGATTGTCTTAAGGGCAGAGCTCACTCTCCCAACTA
TCCGGACAGGTATCTCATTGATCTTTCATTTTCTTGATCTTCTATTAAATGATGAACTTGCTAAT
GCAACTTATTCTACTAAATGCTAGAAGCAAACCAACATGCTAGAGACAAAGCTAACAACTACTAT
TCGAGAAAAGGAAGAAATAAAGAAATAAAACAACAACAGGTCTTT
Right flanking sequence: Indices 526748 -- 527247
GGCAATATCTCTACACACCACACCTGAAAAGAAAATACTGAACAATACAATACTTATGCTCACTA
CACTCTTGATCAGGAAGTACCAGCTCCTCATAAGTGAGACAACAGAACAGAAGTAGAAGCTACCG
GATTCACGCCCGCTAAGAAAACCTCTTCTTCTTTAGATCCTGAAAAAACGAAAATAAGTAAGAAG
GAGCAGTAGTAGGAAGACTTAAGTGACTTCGTTCATTTACGTTGAGATAGACGAGTAACTACTTT
TTTCTATTTTTCAGGATCTACGGTCACCGCGGAGGGCAGCCTTCACGATGAGCGATTGCTGTTCT
TCCAGCAGCGCCCTCTTCCGCATTTCAAGAATGCGGATTTGCCTCCGAACATCCTGTGTATGATT
GTGTATCCAAAGTTGTGCATTGGGCATCCAAAGTTGTGGATCGACGGAATAGAGAAACAGGGGGT
CCTGAAGGAAATCTAAACTTTCTTTGCAGTAATGCAAGCTTATCG
Found at i:534746 original size:29 final size:29
Alignment explanation
Indices: 534686--534747 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
534676 TGCATAGGAA
*
534686 AGAAAGGAGTGTGTTTAGCGAGTAATAGG
1 AGAAAGGAGTGTGTATAGCGAGTAATAGG
* *
534715 AGAAAGGAGTGTGTATGGCTAGGTAATA-G
1 AGAAAGGAGTGTGTATAGCGA-GTAATAGG
534744 AGAA
1 AGAA
534748 CAATAAAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 23 0.79
30 6 0.21
ACGTcount: A:0.37, C:0.03, G:0.37, T:0.23
Consensus pattern (29 bp):
AGAAAGGAGTGTGTATAGCGAGTAATAGG
Left flanking sequence: Indices 534186 -- 534685
AATAGATCTATGCTGTAGTTCCGTAGCAGTGAATATCCTCCGCAAAGGAAATATTCGTATTCGTA
TTTTAGTAGAGGAGGTTCCGCCTTGCCTCAACCTTAGCGTATCTCGGCTATGTCCCAATCGTGAA
AACTCTCGATTTGAATGCACTTTTACAAGCAACAAGAGTGCAATTGGCAACTGCCTCATATCGTT
CATCTAATGATGTGGTATACAACTATAAAAAAAATAAAATCTTTACATTGATCATATCCATGGCA
TGGGTCGTATCAGAACGAACAAGGAAAAGATTCATTAGCAAAAGCACCCGAAGCTTTGAAGCAGA
TGGATCAACATAACCACAATTGACCCTGTTTTCCACCTACTAGCAGCAGGAGTATTCATTTTGTT
CTGGAACACTTCCCAAATCGATATACGAAGAAGGGCAATCTCAGTATTTAAGTAAGAGATTTTTT
ATACGTATGCTAATCCATGCATCTGGAATGATACTTGCATAGGAA
Right flanking sequence: Indices 534748 -- 535247
CAATAAAGGAATCAACACCTGCGTATCGTTCCATTCACTAGTACTGTACAACTACTACTAGCTTG
TAACACTCACTAGCAAAAGTCATTCTATTCATCGATACAGACTACTAGGGCTGAATACATACGTT
ACTCTCATAGTTTCACAAGGTTTAGAGAACTACTAGTTCTGTTTCATTCTACTAGTCGTTCCAAT
AGCACGGAATTCCCATCTCTTGTACCGGGACCAGTAAGACCTATTCCTTCTCTTTCTGTCTAGCT
TGAGGAATCATGGTGGACTTTTCTTTCTGTTTAGCTTTACTTATCAAAGACTTCTCCCCCCTGCG
GTGAAGGAAGAGGCCTGGCACGACACACAAGTCGGGAGACATCACTCCTCAATAAAATAAGCCCT
TAGGCGATTGAAGTGAGGCAAAAAGCACACCACCCTCGAGTGAACTATAGAACAAGGGAACTTGT
GAACAGTTCTATTGAAGGGTATGAGTAGGCGTTGAGCTCAGGACT
Found at i:542837 original size:6 final size:6
Alignment explanation
Indices: 542826--542862 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
542816 TCTAAAATAC
542826 TATGGT TATGGT TATGGT TATGGT TATGG- TATGGT TA
1 TATGGT TATGGT TATGGT TATGGT TATGGT TATGGT TA
542863 GGAACAGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.19, C:0.00, G:0.32, T:0.49
Consensus pattern (6 bp):
TATGGT
Left flanking sequence: Indices 542326 -- 542825
CTCACAAGTCCTCCATACGTCAGTTTCTATTCCAGCCCAGCAACGAAGGTCGGTCTGCAACATTC
CCTGGTACGAGTATGCAGCGTAGTGACTAGTTGATTCTTCAATTCCTTGAAGCCCGTTGCGTAGT
CCGTGTCGAGTTGTCCAATCCTTTATCAATAGGTACAACGGCAATCAGCGTCCTTCAATTCATGC
TAGTCGTTGAGAACTCAGCATGTCGTCGTATTCTGGCGAACTCCGAACCGTTGTTCCGAGTCAAG
TAGCAAAGCTAAGGGTAGGACGAATTATCAAAAATGGAGCATTGCCCTGCTTTCGTGTCGAGAAG
CAGAGTAGCAGATGACTTTCCCGAGGTCACAGACGTAACTCAAAAAAACTCATTCCTTTTGAATT
AATTTCGAATAGTTCTTATCTTTGAACCACTAACATCCAAGTATCAACGATGCGCGAGACCTTAC
AAACAATCTGGTAAGCTTGAGTGGACCGACTGAGATCTAAAATAC
Right flanking sequence: Indices 542863 -- 543362
GGAACAGCTTGACTTATCTCAACAAGTGCAATTTCTTTCAGGCTTATTCACTGAAATATTAGAAA
CCCTTTTTTCTTTCTTAATGACTTCGCTCTTCACTTACTTCATATCCAACTATTGATAGCCGGCC
TAGTTTCAAAGGATACCCAGGGCGCTAAGCATGAATAGGAGACAGTGAAAAACAGCAATCAGTAT
AAGAACGAAAACAAATAGTAGAAAGGAGTTAACTTGGGTATAGGTTTCTAGCTTGGGTGGGAGGA
CTCACTCACTAGGGAGGTAGCCGCAAAAATAGGAAACATAGGGAGTAGCAGCAATTTTTAATAGG
AAAGTAGGTGTAAGCAGCTACCCGATAGAAGTCTAACGAAAGTAGGAAAGAGTTTATTGAGTGAC
TTGAGGATAACGAAACCACTATCTATATAGATAGGATTTCCTATGCATAAGATTTCTGAGTAGTA
CTTGAAGCTTAGCACTAGCATTGGCATTTAGTAGTAGTTCTGGCA
Found at i:551969 original size:5 final size:5
Alignment explanation
Indices: 551959--551985 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
551949 ATTTCATCTT
551959 TACTA TACTA TACTA TACTA TACTA TA
1 TACTA TACTA TACTA TACTA TACTA TA
551986 TTGAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 551459 -- 551958
ATTTAAAGAAAGAGAATTTCCTCTATCAGTTAGTTACTATGGAAATGGAAATGGAAGAAGATAGA
GGGGTCTTAACCACAGAATGTGTGAACGGTGATGATTTACATGTCTATAAGTGTAGATTTGCATC
TGATGCACTTCTACGCGTTAGCAAAAGTGTTATTAAACACCGTCTTAGTCTTAGTAGATGGATAT
GGATATTACACACCCCCGCAACTCACTAAGTTGAGGGATCTCAAGGAAGGCCACTATAAAGGCTT
AGGTGAACAGAATAACGTTAAAGCACTTGTAAAGATACAATACAGTTGAGTGATAGTTTCTATCA
TACAAATCAAACTGATATATTAGCATATATTGATGGTATTATCCCCGATGGTCTTATAAAAGATC
TAACCGGACAGGTTGTTAGTCTACCAATCTATTCTATTCAGAATCATAATATGATAAATTACCCA
TGGGTCTCTCCCGTAGGAGAACTAACTAAAGTTCTATTTCATCTT
Right flanking sequence: Indices 551986 -- 552485
TTGAAAATTGAAATTGAATTGATACAGTGTTTGATAAATGGTATCCAGGAGTACAATATAGCCGT
TGGTATAACGAAGTATTTATAGCCTTCAAGTACGATGATTTTGTATGTAACCTAGAAGGTCTTCA
AAGTCTATTATCTACAAACCAACTAGAAGGATCTGTTGAATATATCGATTATATAAATAATTCGT
ATTTTATCACTCATAACGATGAAAAGTTTGTTTACCTGTATGATGGCCATGTTGAGGTAAGGACC
CTCCATGGAGGCCGATCATTCTGGGAAAAAAAGGTAACACATAACAAAACATCTTGAAAGGGGTT
AAGCAGGGAGATCTCGACTAAGATCGTAAAGGAGAGAGAGACTAGAGCCGCTTACTCACCCTAAG
GCGGCAAGGGACAACAGAATCGAGGAGAGAGTCGAGTAATCGCAGAGTCGAACCACGATGAAGTT
GTGCCCGCAGTGTTAGTTTGTAACGTATAACTTATCGAATGTTTC
Found at i:556112 original size:5 final size:5
Alignment explanation
Indices: 556098--556151 Score: 101
Period size: 5 Copynumber: 11.0 Consensus size: 5
556088 TTACTCTCTA
556098 CCTA- CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
1 CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
556147 CCTAT
1 CCTAT
556152 AGTAGATTGA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.08
5 45 0.92
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (5 bp):
CCTAT
Left flanking sequence: Indices 555598 -- 556097
CGTTTGCTCATTTCTTTGTTTAGCATTTCTTTCCTGAATCAGAGTTTTGAGTAGCCGGGACGGAC
ATGAAATTAAGAAAGAGCCCGCACGATCTAGATGCACTGAAAATGGCTATAAAATATCCAGTTTT
AGAAAACAACACTCTCTCTCTCTTTACGAGAATTTCAAGTGGGTTGGTTCAATTCCTAGCTTTTT
TGGATTTGTATTGCCTTACGAACTTGCTAACTAAAAGAAGGTAGGTCCACAAACAAGTCTATATT
GGAATAGATAGAGAGCATTTTTCCCCCTTGTAATTTCACAAAAAGTGGAGAGCCCTAGCATTGAA
TGAACGTAGTTACTTATCGAATTACCTGAAGTGAAGGAATGCCCAGACTTATTTACTTGTCCGAA
TAGATTGACTCGGTAGGCCGTAGGAAAAGATAACTCATGCCTACTTTACTTACTTGCCCAAGCCC
TACCTACATATTTTACTAGTAGTTCTTTCGGAGAATTACTCTCTA
Right flanking sequence: Indices 556152 -- 556651
AGTAGATTGAGTCGAGTAGTGATGAGCACTTATATATACCAGTCCGAGTATGGAATCGAACTAAC
TCATACATAGGAATTCCTTTCAGGTTGTCTTGCATTTACTTTTTCTTTTATTTGTCCCGAAGAGA
CAGGGAAAGCTTTACCAGTTGAAAACTGCGGACGGATTAGCCCTCATTAACTTAAACTTATGAGT
TAAGTTTAGTAAGGAAGATCTTGGCTTTGTATTGCCGCTTTTCCTAGATATAGCTATAGCATAGT
AGTGCGTTTGCGATAAGATTGAATTGAAACTCGAAGTGAGAGCATGCATTTCCAGCCATACGGAG
AGAATTACCCGCCTACCTGGATGGCCTGCCTAGTAGTTCTTTTGAGAAGAAGTGCGCGCACATCT
TAATTCCAACCCATTTCATGGATTTTCTCTAGCTACCTCATTTCAGTAAAGTTAAGCGGGTCGCC
CTTTAAAGCCCCAGATTACCTGGTGGGGCTAGAGTCTATTGTTCA
Found at i:558376 original size:5 final size:5
Alignment explanation
Indices: 558331--558375 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
558321 ATCCTCGTAG
* * *
558331 TACTA TACTA TACTA TACTA TACTA TACTA AACTA AACTA AACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
558376 AGTCGTGGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 557831 -- 558330
TTTGAGAGGAATGGCTCATCCCCTCACCTCAGCTTTAGGAAAGAGCGAGCCATTCCTTGCCGGGG
CGGTATGAGTTAGCCATTCATCTGTTGGATGTATGGAGCCGACTCAGTTGGGGCCAACGCCAGCA
ACCTAAGAAGCAGAAATTAGAGACATAGGCATTTTGCAAATACATACAAATAGAATATACCTGGC
TCACAAATCGAAAGCAGCAGAGTAAGCAATTGTTAGAAAACCAAGACAGGTCAATTGATCCATCT
TAAGTAAGCACTGTCTGTGTGAACTAGACCGCCTAGTAAGGAGATGCTTATTGCTATGTGGTTTC
CACTCTTTCTTACAAGAGCTAATGAACAAGAGCTATTCCCTTCCTCAGATTCCATTTAGAAGCTA
AAAACATCAGTAATGATGGAGGAAAGAAAGCCAACCTTAGCGGCCTTCTTCATTGGAAAGAACAT
TTCTCCCTTTTTCCGCTGCGCATTTCCCCGCCAGAATCCTCGTAG
Right flanking sequence: Indices 558376 -- 558875
AGTCGTGGCTTACAAGCTAGCCCGAAAGCAGCTTACCCTTAGCGATTTGACTAAAAAGCCGAGTT
AGCTAAGAATGCAGGAAAGAGAGATGATCTTAAAGAAGATAACCAAGTGGTGTATCAGCCTGATA
GCTTGCTTGGCTCCTTTACCCTTCATGGTTAGAATGGGTACCTCGCGGTTGGATCCATTCCATCA
TCCATCAATCTCAGGATCCAGGCTCGCCTTCACTCGGTCAAGGGGTAGCCCTTTACCTCGTTCCG
GGGTGATGAACCCTTTCATTCCTAGAACAGGGTATCTCCAATTTGAGTAACCAGCTTGCCATCCT
TCTCAACCCACAATTGGAATTAATCCCGATAATCCTTTCCTTAGTTAGCTGCCCAGAAGGCGATC
CAAACAAGAGCTGTATCAGCTCATGGGGATGACCCAGAATCTCTTTTCTCTGGTCTGTCGATCCA
ACCAGCTACCATGTAAACAACTATACCATGACTAGTTGACCCAGT
Found at i:567461 original size:5 final size:5
Alignment explanation
Indices: 567451--567476 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
567441 TTTCCGGCAC
567451 CTTTA CTTTA CTTTA CTTTA CTTTA C
1 CTTTA CTTTA CTTTA CTTTA CTTTA C
567477 AGTAGTAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (5 bp):
CTTTA
Left flanking sequence: Indices 566951 -- 567450
GCGGGAACTCAGATGACTTTGACTTGATACTTGATTGAGATGCTTGTTTTCCTAAGAGACCAATC
CTATGAATCTTCCTTGGACGATTGCCGAGTTGCCACTTCTGATTACCAAGATTACCAAAGACTTA
TCACTTCTCGATACGAAAGACCTGTTTCCCAGAACCAGAACCAGAATACGAGGAATCGATTTTGA
CCACTGCTTTGTATGGAATGGCATACGGCGCTTCTGCTACGAATCAATGTGTCAGTTCCCACTAT
CCTAGCGAACTGAACAATACCAATACGCGAATCACGAGCCGGAACAAACGAAACGAGTGCTTTCT
CCGGAACAGAGAACGAATACACGGCGCTTCGAATGGAGAATACGAGACTGAGGAAGAATACCTTG
ACTCGCTATCTCAAATTCGAATACAGAAATGCAACATATGGTGGAAATGCTATGAGGAACCACAA
ATCCTTCCTACTGAGGTGAGGAAAATACTAGATTATTTCCGGCAC
Right flanking sequence: Indices 567477 -- 567976
AGTAGTAACCATACCATAGTTGGAGGTAGTTCACTAGCACAGCCAGCCAATGAGTAATCAACCTT
CCCTTTAGCCAATGAGTAATCAACCTTTTCCCTTTCTGGACCAGCAAACAGAAGAACCAATACGA
GTAACCCTTCAAGCCAGAAGAGTAACCCTGAAACCTACGAATAGGAAACTGTCTTTACTTGAAAC
CGTAAGCAGCAAACCTATGCCAAGGTCACTCATCTTTCCTAAAGACGTTGACTACGACTCTAGAT
TAGATCTGGTGAATCACCGGTACCTCTAGGTATGGAGATCCTTCGACAAGTTCTTCTTCCCCATT
GGCCAGGTCCCTCTGCATACATAGAATGTCATAGATAGAAACGATATCTCGTAACGGAAGACGAT
AGATTCTAAAACTTGATCTCGCCGGGACCACAGAATTTCGTTTTTCCTCGATAGAGAGTCCTAAG
ATCTGATCAAGTGATGCTCACCATGGTCCAAAAGTTGACAAGCAG
Found at i:572458 original size:18 final size:18
Alignment explanation
Indices: 572435--572469 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
572425 AATCAACCTT
572435 AGTATTAGTAAGAGTAAG
1 AGTATTAGTAAGAGTAAG
572453 AGTATTAGTAAGAGTAA
1 AGTATTAGTAAGAGTAA
572470 CCACTTCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.29
Consensus pattern (18 bp):
AGTATTAGTAAGAGTAAG
Left flanking sequence: Indices 571935 -- 572434
AACTCTTATCACATTATTTGTAGGCTTTGCTATTCTTACTCCTCTGTGACCTTCATCAATCACTA
GGCACAGTATCAGTTAGCGTGATATGGGTTGGTAAAGTAGTAAAGAAAGTCTTAGTTATTAGGAA
AGAAATGTTGCAGCCTATCTGCCACTGAGTTGGAATCGATTTGCTTAACCTGCTAATGCACGGAG
ATTAGCCAAATTAGAGAATATGAGGACGTCGGCAATGGTTGGTTTTAATGCTCGCACAGACGAAA
TAGAATACCGGATTGGACCTTAGCCGCTCGGGAATAGAATCCTTCACCACCAGACCAGGAAAGGC
AATCGCCACGACGCTGACATCTTTTCATACGTACTAGACCCGGAGGCAAGGCAAATTCGGAAGAA
GCCGCTTACACGACTTCCAATACAGACAACTCAAGCAAGAGGTTTGACATCACTCCTGCAACTGC
AAGACAAAGACTCAATCAAGAACCAGAGAAACTTAAATCAACCTT
Right flanking sequence: Indices 572470 -- 572969
CCACTTCTGGCTCGTTAATGTTTCGCTTCTTTGTCCTTAAAGAACTTTGCATACATCGGAACATG
TAAGACAGCATCAAGGATGGGGATGGTAATCTGCGCATCTTGAATCATCTCAAGAAACTTAGCAA
ACTGCTTGTCTTCACTTGACTTCTCAAACCGTTCTGGAAATGGCTGCTTCGGCTTGGTAGGTGGA
ACTGAAGTCGAACTGATTGATGATGGATCATTAGGAGCTATAGCTGGTGGTGTAGAAGAACTAGG
CTGTCCAGCAGTAGTAGTAGTGGACTGCTGAGGTACCTGCTGGTCCTGTGGAGAAGGTTCATTTA
TCAGGAATCTACTTGTTGCATAATGCACATGCCACAAACGATAAAGTGGAAGCACACTCAGATGA
AGAGGATGGTGAATTGATCAATAATCCCATGTCTTTTTTTGCTGAGAAATCTTGGATCAAGACAT
ACAAGGCAGCATTGGTCAAACATAGGACTACCTAGGCTAGGTCAT
Found at i:585013 original size:20 final size:20
Alignment explanation
Indices: 584985--585023 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
584975 TCTGGGGATA
584985 AAGTAAAGTATCGTAAAGTT
1 AAGTAAAGTATCGTAAAGTT
*
585005 AAGTTAAGTATCGTAAAGT
1 AAGTAAAGTATCGTAAAGT
585024 AGTTGACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
AAGTAAAGTATCGTAAAGTT
Left flanking sequence: Indices 584485 -- 584984
GCTTGCCCTCCGGGGCCCCGGGAAGAGGAAGAAGGAGATAGAGCAAAGGGTCTCCTCTTTCTGTC
CGCTCTTCCCGGCATGTAGAGATCCGATTGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCA
TAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCCATCTGACCTGCTTAATCAATGACTCCGG
TAGTCACCTGAACCACTCTCTCGGATAGCCCACAGCCTCTCTTCTGGATGCGAAAGAAGATTCGA
TCAACGTACAAGGTTTGCCTTCTTGTGATGTGAGAAGGAGGGTTCTTAATTGTGTTCTCAGTGCA
AAAGGAGTCTGGTTCAGTGAGTCTGAAGAGAGAGAAGATCAGTAGAGCAGTTCGGGGCTTTGGGA
TTTGCCTGATCGACCCCTACCAGTGTATTAAATGAAGATTGACATTCGTATGTACAATTTACCGG
TTCTTCCTCCCGAATTGAGACCCATTGTTTATAGGTCTGGGGATA
Right flanking sequence: Indices 585024 -- 585523
AGTTGACAAAGCAAGTAGGAATAGGTCATGTCACAGATAGGCAAGTATAGAAGCAGGAGAAGCTG
ATAGACATTTGTGAATAGCAAGGCCAAGCTGTATACATATAAGCATTTTAAGGAGTTGTTTGTTG
GCATATGGTTTGTTGTCACCACGGGATGCTTATTGTTGAGAAACATAAAAAAGGTAGGCATATTG
TTCAGTTCACGTTTAGGTCAGTATAGAAGTAAAGCACGAGATAGGTGTTTACAAGCTAGCTAGGG
TTTCTAATAGGTATAAAAGGGTAAGCTAATAACCAAGTAGTAGGGATAGGTCAACGCAAGTCACG
GGTAGCCAAGAGAGACGTATTTAAGACTTTTAGTTCCAGGATAGGCAGTCATGTCAAGTAAAGTA
TAGCTTAGATAGTTCCTATAGAAGTATAGCTAGCCAAGTGACTAGGTTTAGCGGAGATAGAAATA
GCGGGCGAGATATCAGGAGACAGGACTAGGACTTTGAACGAAGCA
Found at i:600929 original size:22 final size:22
Alignment explanation
Indices: 600901--600943 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
600891 CTTTTCATCC
*
600901 AGTATGATAGGAGTACTCGGCT
1 AGTATGATAGGACTACTCGGCT
*
600923 AGTATGATAGGTCTACTCGGC
1 AGTATGATAGGACTACTCGGC
600944 AGATAGGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (22 bp):
AGTATGATAGGACTACTCGGCT
Left flanking sequence: Indices 600401 -- 600900
AACCCTATTCCCTCAAGCAAGACTTAGTACAGCTAATGAATTAGTAACGAATAAAAGGTTGAGTG
GGTGTTGGTGGTAGTACGTCCACACTAAAAGAGTATAGTTGCACAATTATCAACCACCTATTTTT
GATCGTTCTATATCAATATTGATACTATATCAACATATAAGTCGGAATTCAAGTATCCACACTCA
AGAAATAAAAAGAAAGCTAATCTTTGTTTCATGATGGATAGCTACTCTCGATAGAAGGGTAGAGG
GAGGTAGCTAAGGTTGGTATTACGAGGAAGGTTGCTATTATTAGATAGAATTTTTTTAACTATAT
ATCATATTCTTAACTAGGCTAACGCGGTAAAGGCAAAGGTTTGATAAAAGTAGACACAATAGTAG
GGGAAAGATGTACTTCAATGAATTTATCTCCGTAATGTACAGTACATCCTTGAAGAAGGGAGAGT
GCTGAAATAGATGCACCCAAGGCCTCACCCTTAATCTTTTCATCC
Right flanking sequence: Indices 600944 -- 601443
AGATAGGAAAGCCTACCTCGCAGAAGATATCTACCATGATGCTACTCGGCTCTTAGAGGGGCGAT
CGATCTTTTTTCCAACTCGCTACTCTTCACCAGCAAGGAGATTAGCTCTTCGCTTCAGCCCTCTG
AACTTATACCCAACTATAGGACTGTAGAAATCAAAATGATGGGTAGGGGGAGGCCTAGTGATGGT
AGATGTGGTTAGGGTTGTACCGCAGGAGTGTACCCTCGATGGTGGATAGATCTCCAGCTTTTCTT
ACTGGATTTTGTTTTGATTGATCTTGCGGGTTATCTTATCTATCTATTTATTCAGCTTTCTTATC
AGGGTTGTCAGACTTCTTCTTAGAAGCTTTCTTCTTACTAGAATCTTTGATATTCTGTGTACCAG
ATTTCATCTGTTCAGATTTAGCGAGTTCTACTCGGAGATCCTCATTCTGCTCCAGCAAGCTCTTA
ATTAGCTTATAGGATGTGGGATTCAAACTATTAACATCCCCATCT
Found at i:609063 original size:23 final size:23
Alignment explanation
Indices: 609029--609076 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
609019 GAGCATACTA
*
609029 TAGACTCCGCGAATACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
*
609052 TAGACTCAGCGATTACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
609075 TA
1 TA
609077 TTTGTCTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (23 bp):
TAGACTCAGCGAATACAAGTCAG
Left flanking sequence: Indices 608529 -- 609028
CCCACTAGCATAACTATCCTACGCACGATTTTGAGTTGTCTGCTCTAATATTCGCACTGAAGATC
TGTGGGTGCCGACTTTTCAAAATCACCAGACAATAAAAGAAAAATGCATCAGGAATGAAATCTGA
CACAGCGTGGCTGGAACTAATTAAACATTACGATCTCGTCAAGGATTATGCAGCTAAGGAGTGGT
GGCTGAGGCAGTGGAAAGAGAAAAGCCAATATGGCGTGGTGACGAGTGAGGTGCAACTCTTGAAA
TAGATGCAGCAGATTTGTGCCTTGGTAAGAAGAATTAGTGGACAAACTGACAACGAGAGAGGGGG
GACCGAGCCAACGAGGAAGAGCACTGTTCTTATGCTAAAATCCATTATGGTACATACACCGGGGC
AGGATACCCGATAGGCATAGGCAAGGTGGAAGAGATCAAATAAGACATTGAGAAAAGGATGCAAA
AAAGAAAAGAACGAAGTTGCAAGAAAGAGAGAAAAGAGCATACTA
Right flanking sequence: Indices 609077 -- 609576
TTTGTCTCACCGTACGTCTTCTTCACCCCGACTTGCTTCTTTCTGCTCTTTTCATTCAAATAAGC
TCTTCCCACAACCTTTCATTGCCATTTGTCTTCGAATCCTCTTCGGCAACGCTGGGCCGGTCGAA
GGGCGCTTCCAGCTCGTTAAAGCAACCACAGGAGAAGAACCACAAGGAACGGCACTACAGGTATG
GTACGAACCATGCTCTAAGATTGATAAACTACATCATCCAAGACTTCAATACGAATCCATAGGTG
AGGAGAGCAAGCCAATGAAGTCAGCCCATTAGCTAGATTGGCAATAAGCATTACAGGAGTCAGTC
TGTCCAGTATGTAAGCCATGAGTCTACTACTTAAGCCTATGCAGTCTGTCCAGTATGCCTCATGC
TGTAGTATGTCCGATATGTCATGTAAGCCATGGAGTGTATGGACTAAGTAAAAGCAATGGGCTAG
GATTGGGACTGCCTACCTTCTACAACCATTCCTACAGGACACCAA
Found at i:624150 original size:23 final size:22
Alignment explanation
Indices: 624101--624152 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
624091 ACTTTAGCTT
*
624101 TAGAATGAGGAACGTATCGTATA
1 TAGAATGAGGAACGTA-CGAATA
624124 TAGAATGAGGAACGTA-GAATTA
1 TAGAATGAGGAACGTACGAA-TA
624146 CTAGAAT
1 -TAGAAT
624153 AGAAAGGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 2 0.08
22 2 0.08
23 22 0.85
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (22 bp):
TAGAATGAGGAACGTACGAATA
Left flanking sequence: Indices 623601 -- 624100
CTATATTCCTCCAAGAGGGAGGGGAAGAGCCCGAGTCAAAGTTCTTTGTTGACCAATCAAAGAGA
ATGAAAGAAATATAGAAAGAATGGATTAGTGTCAACTCCATGAATCGGTACAGGTAGAAGTAGAG
GGGGCATGCCAAAAAGAATTTGAGAAGCCTCGTTTCTGAGCTTTTACAGCATCTTTTGATTCAGA
AGCATCTCCCACGAAATCACATAACATAAGTGATCCTGCGGAACCGGCTTTCCTACACTCACTGA
TCCATTCAAAGGATTTTATTTTCTCACGACTGATCCGCACTTCAGCTCCGATATTAATAAGCACT
GCCTTCTAGCCAGTCTAGTCCCGGAGACATTATACTCTGGGTCTGGCATCGCCTCGCAAGATCAT
CTAGTCTAGATTTACTCGGGTGTGCCCGATTTCCATGATCCCTATTTCATAGCTTGGCTTGGGTT
GAAGGTGAAGTCTTTATATTCTAGTTAGAGTCACTACTTTAGCTT
Right flanking sequence: Indices 624153 -- 624652
AGAAAGGCGAATAGAAAGACTAGTTACTCGCTCTAAAGTATTATACGTGAACTATTCTCACAGAG
GAATGAAGGGAGCTGGAACCAGGCTGCCCAGGAAGGATTTCTGAGCTCTACTCTAGTATTGACTG
GCTTTCAAGGAATGGAGCTGCCTATATAAATAGAAAAAGCTTTGCCCCGCACCCTAGCGAGAATT
TCATTTCTTTAAGTAAGCTGCTAGGTCTTATTTGATGAAAAGCAAGACAATCCACCATGGATCGG
AGGGGGCTATATACGAAACTGAGGAGCTCTTACCTCTATTTATGATAATAGAATAGCTTTGGGTG
GCTTCACTTATCTGATAGCCAATGAGTCACTATTCCAATCACCGCCCCTCGCTCGTGCCCATCCA
TTAACGGAACGGACTTACCGTTACTAAGCTCGTAAAGAGGAGGGCTATCTTTCTTTGAGGTTGCG
TATGATTCTTAATTTGAAATGAATGAATCTGTTCATAAGATTTGG
Found at i:636204 original size:5 final size:5
Alignment explanation
Indices: 636194--636220 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
636184 GATCGATCAA
636194 ATAGG ATAGG ATAGG ATAGG ATAGG AT
1 ATAGG ATAGG ATAGG ATAGG ATAGG AT
636221 CCTAGCTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.37, T:0.22
Consensus pattern (5 bp):
ATAGG
Left flanking sequence: Indices 635694 -- 636193
GGCGAGAAACCAACTCAAACTATCCCATTCGTGCCTACTGTGAATGTCTATACTTAGAAGCTATC
CCGCGAAAAGCACAAGCTATTCCTCTTCTACTACCAATACCAAGTAGCTCTAGCTAGCATATCTC
GTCGTGCATAAACCTTACCTGCTTCTAAAACTTCTACTTACATCTGTGACTGCCTATTCCGGTCT
TTCTCTAAAATAGCTATCTTTGAATTCCTACTTGTAAACAAACGAAACAAATAAATATGCGCATC
CGCCAATGCTTTTTAGCGCCCGCGACAACAAAAACTTAGTCCCTTGCCACGCTCGCTTAAATGTG
TCTTTCTTTGATAAATAAATACCAAAAGCAGAGCCTTTCTTCCCTTCCTCGACACAGTGGATTGC
TTTTTTGCCAGGAAATGAGATGCTTTTCCTAGACTTTGGGCTTGCATCCTTTTCTCTACTTCCTT
TCCTATATTGAAAGAGTGGACTACAGAGGCTGAGCGATCGATCAA
Right flanking sequence: Indices 636221 -- 636720
CCTAGCTGTCAATTTCCTTGAGTAGAAAGGAAAAGAATTCGCCTAAAATGCTTGTTGGGGTAGGT
CAAAGAGTATAGGTTTCACCCGGCGTAAGACAGAAATCCTAGTCTCGATAAAGCGTGTACCAAAG
AGTTTAAAGGGAAAGAAGCAAGGGTAAGGGGCTTTGATGAAAAATAGGTGGTCCGCGATCCTTCA
CTTCCTTAGGGTCTTTAATAAAATAAATAGGGAGAAGAGACAATAACTAGCTGACTTAGCGTCAC
CGATCACAGTTCTATATTCACTAAGTGTAAGTGTAAGTGAACGAAATGCTGATTGCTTGCTTGCA
GCACTAGCCGCCCAACTATTATACCTTGATTGGGGAGAGCAAGGCTTTGTGCCCAAAACAAACAA
CCTAGCTTGCACTAGCTGATAGAAATAAGGCTCCTTTCTATCTTGACTCAGCGATATCAATACAA
TAGGTTATTCCCCATCTTGCACTTCTCGGAAGAAATAGTGCCCCT
Found at i:645768 original size:18 final size:18
Alignment explanation
Indices: 645741--645777 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
645731 GGAATGATTT
*
645741 TAAGAGCAACAGCTCATA
1 TAAGAACAACAGCTCATA
645759 TAAGAACAACAGCTCATA
1 TAAGAACAACAGCTCATA
645777 T
1 T
645778 TTCTTAGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.19
Consensus pattern (18 bp):
TAAGAACAACAGCTCATA
Left flanking sequence: Indices 645241 -- 645740
AGAGAGAGATTGGACTCGAGGCAGTGGAAGACGGCTATCTAGTGGGTATCTACCATCATTCCTCC
TTTCGGATCGGACTGGCCCATAGATATGAGATCAAGAAACCTACGGAACCAAGTGATCATCCCCC
GGCAAATAGTCCTGTTCCCGAGCTTATGTTACCGAACTAGCTTTGATCTACTTGCTGCTACTGAT
CCGTGACGCAGGAATCCAATCCGGACTTGTTCCCAATCAACGGATTATCCTGTTTCGTAGAAATC
CTGTCTACTTGTTCTACAATTCCATTCCAAAGGAACTTCTTCTCCAATCCCAATTAGCTCTTCTC
CTATTCCAATTCCTATTTAGATTGATATATCTATCAATCTCGGAATGGCGCTTTTATGCTTCCAA
TTCGGTCGGGAATCCCATCCCTCGAGTCCGGCACTGCCCACTCATCTAGTGATGGAGAAGGCGAG
TAAACTAGACTCAGCTCACTTGCCATAGCTCATAAGGAATGATTT
Right flanking sequence: Indices 645778 -- 646277
TTCTTAGCAGAACGGGCTATGCGGAATTCAAGTACAAGTAGACTTAAGCGAGCATCCCTATTCGA
TGAAACCAGACACTTATTAGATTAGGTAGTCTCCGCTTCTGTTTCTCTTCCTCTTCCGCCTAGTG
CCAGTCTATTCCTGTTTCGGAGGACCTCCACTCACAAAGTGCCAGAGACCAACCAGTTCTGTTAC
AATCTGAAATGGAGACTAGGATGCTGACTCGAAAGAGACAACTCTATTTGCTTGCTTATCAGCTG
GTGATTTGTGATTATCCTTTGGCCAGAGATCCTGATCATGGAGATATGCAAATTTTCAACACAGA
ACTGCCTTACCCGTCCCTCTACAAATTCGCCGTATGCCCCTTACCATATGATATGATGATGAAGC
TCCTTCTGATGAAAGATTATGGCGTGTGCCGTCGGAGTGTGAAAGAATGGATAGCTACTAAGCTG
TATTCATGTCAAGCCTTCCTTCCTCGGGGAATATACATATTGCAA
Found at i:654995 original size:6 final size:6
Alignment explanation
Indices: 654984--655025 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
654974 TACTGTACTA
654984 TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGG- TAGGGT T
1 TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT T
655026 CCGTTGAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 5 0.14
6 30 0.86
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (6 bp):
TAGGGT
Left flanking sequence: Indices 654484 -- 654983
CAAGCGCTTCCGATCAGGTGTGGTCAATTTGATAGCTGCCAGTTTGCAAAATTATGGTTGTCCTA
TCGGCGCTAGAAGAAGCGTCCATACGCCGCTTTTAGGTATCTCCGCTTCAGACTGAAGTTTCCCA
CGGCTTAGAATAGAAGACGTTGAAGCCGCACTAGCTATGTGCCAGGACGATGATACAGCAAGATT
AAGGATCTCCGTAAACAGAAGAAACTCAAGTGAAAGAAGCCCACTAATTGAATAGTCAACTTAGA
TGGTTCCACTAGAATGGAGGGCAACTTCGGACACTCCTCTTATTTTACTAACTTAATATTCTCTG
GCTGGTTCTTAGAGTTTTCGTCCTGACATTGTTAAGCATACTGCGATTCACACACCTACCGACTT
ACGACTGCTTACACAATAAAGGTTTTCACTACCTTAGCTTACGGATAGAATGAATGCTTGTACTT
GCCCAAGGTGACTTCGCATTACTCTATACACAGGGTACTGTACTA
Right flanking sequence: Indices 655026 -- 655525
CCGTTGAGATGAGCCTTCCCCACTGTACAAGAGTTATAATATTCTATTAGATTGGGAATTGTACC
CGCTGGTTTTCTTTTAAGAAAAGACACAGAGTCCTACTTGGGATTGGGACTTCCACAGTAGCTCC
TTTACCAAGACTTGATAAAGTAGTTCGCAGTAAAGAAAGAACACGGATACGTTACTAATAATAAT
AAGATTGGAGTTAAGATGCGGATCAATTTGATATGCTATTTGTTATTAAACACTGGTGTAGTACG
ACTACATACATAGCCTTCTTATCCAGTACCAAGGGTGAAATAAGTATTCAAAGTACCAGCAACAC
TCGAGAAGAGAGATTCTGTCGAAAGAAGAAGTGCGCCAACGCTGGAGACCTACAATATACCATAT
CCGAGGGGCTACCCAACAAGGAGTAGCTACCCAGTGCGATAGCTTGCTTTTACTAATTAATAAAG
GACCAACTTCTATACTCTCCGTGAGAGACATCGGAAGAATAAGGG
Found at i:660322 original size:15 final size:15
Alignment explanation
Indices: 660302--660331 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
660292 CGAAAACGCG
660302 TATGTTAAGTAAAGT
1 TATGTTAAGTAAAGT
660317 TATGTTAAGTAAAGT
1 TATGTTAAGTAAAGT
660332 AAAGTAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (15 bp):
TATGTTAAGTAAAGT
Left flanking sequence: Indices 659802 -- 660301
GTTGGTAAGTCACTAAATCCCTATCTCCCGGTGGTCGAGTACCCCCGACGCGTCGAATGGGTTGT
TTAGTCTGACTTCTTGTGCTGGCCCGACATCATTCTGTCTCCCGCATTCTCTCCTTTCATCGGTT
TGTTTTTTTTACTTCGCTTCGCGATTAGAGTTGTACGCATCATGCATGGGAATCCTTCCGTCCTT
GATGTTAACGCTCTCGTGCGTAGGTCCCGGGTCAAAGGCATCTCGAAGGAAGCTGCTCCGCATAT
GCGATCACCTCCATGTACCTACAGATGAGGGCTCCAACGCCTACTGTACAATCATGTGGGAAGTG
CATCCTGCACACCAGAAAGTAAGTGGCGTACGCCACACCCCCTCCCCCTGTACCTACACCCATTG
AAACGTTTATTGTCTGACAATCTCCGACGCGACGCGCAACGCCCCATGCAAATCCCTACGTCGGT
CGATCGATGCGCACAGAAGGAGAGCTTGTCCATAACGAAAACGCG
Right flanking sequence: Indices 660332 -- 660831
AAAGTAAAGTAAGGACAGCAAGCCAGTAATGAGAATAAGCTCTTCATCTTAGTTTCCGCTTTCAG
ACAAGTACAGCGTCCACTTTTCTCATATTTGCAAATTGCAGATCTTAATCTTAATAGGATGTTGG
CTAAAATAAGGGAGGGATCGGATCCAAATACGCAGTGCAAGATGAATGGCCGAAAGAAAGATTAG
AAAGTATGCCCTCGATTGGGCTGTGACCGACACACTCACATTGAGTCGCCGATACAGGTAGTGGT
CAGTCTGCGCAAAGCCATAATACCAGATATCGGAAAGCGAAGCGTGGTGCTAACATGACTAAAAA
AACGATTCGGAAATCTGGAACGAAGAGAAGTTAGTAAATAGGCCTTTTGGGAAGCCCTTGATCGA
GTAGTGAAAGCATTTGATCCATCAGATCAGTGCTTGATCTTCTACTTATACTTAATAGGTTCAAG
ACCTAAATAAAGGAATGAAAACAGCTGCAAGATCCGCTTACTTCT
Done.