123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_072309
Parameters: 2 7 7 80 10 50 500
Length:  162956

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32--75	22	2.0	22	100	0	88	27	13	36	22	1.92
3431--3484	13	4.2	13	77	13	67	53	0	7	38	1.29
4415--4447	13	2.5	13	95	0	57	45	18	12	24	1.83
6591--6620	16	1.9	15	93	6	51	56	0	3	40	1.16
7317--7342	13	2.0	13	100	0	52	15	0	30	53	1.42
8351--8375	13	1.9	13	100	0	50	72	12	0	16	1.13
8572--8599	14	2.0	14	100	0	56	28	21	0	50	1.49
14753--14801	19	2.6	18	84	9	62	34	4	0	61	1.15
14969--14993	12	2.1	12	100	0	50	60	0	0	40	0.97
15030--15061	16	2.0	16	100	0	64	43	18	6	31	1.75
17327--17353	14	1.9	14	100	0	54	62	7	7	22	1.46
28282--28313	15	2.1	15	100	0	64	34	12	0	53	1.39
30120--30157	20	1.9	20	94	0	67	63	5	10	21	1.46
32550--32596	15	3.1	15	93	0	85	19	6	14	59	1.56
32665--32729	29	2.2	29	83	0	85	46	15	18	20	1.84
33362--33421	19	3.3	19	88	9	81	18	1	5	75	1.07
46946--46993	24	2.0	24	100	0	96	45	8	8	37	1.64
48632--48662	15	2.1	15	93	0	53	16	6	9	67	1.39
49070--49107	12	3.3	12	78	14	53	47	15	5	31	1.68
53423--53459	16	2.2	17	90	4	58	40	18	0	40	1.51
57966--58003	19	2.0	19	94	0	67	31	23	10	34	1.89
62564--62609	23	2.1	23	84	11	62	47	6	0	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62664--62695	16	2.0	16	100	0	64	56	0	12	31	1.37
66536--66574	19	2.1	19	100	0	78	38	5	15	41	1.69
68375--68472	18	5.4	18	73	19	78	47	2	7	42	1.42
68372--68464	36	2.7	33	86	6	116	48	2	6	43	1.40
68374--68427	13	4.4	13	73	21	53	51	1	3	42	1.30
71317--71381	21	3.1	21	88	0	103	35	24	7	32	1.84
74452--74521	36	1.9	36	97	0	131	45	8	7	38	1.62
74877--74902	13	2.0	13	100	0	52	46	15	0	38	1.46
75342--75370	14	2.1	14	100	0	58	34	6	6	51	1.55
75368--75396	14	2.1	14	100	0	58	37	0	20	41	1.53
79853--79880	14	2.0	14	100	0	56	35	0	7	57	1.26
82784--82832	24	2.0	24	92	0	80	28	32	12	26	1.92
83094--83135	20	2.1	20	100	0	84	26	19	0	54	1.44
84024--84074	22	2.2	23	89	6	77	11	1	7	78	1.04
85661--85717	20	2.6	21	81	18	71	26	3	0	70	1.03
85678--85711	17	2.1	16	88	5	50	23	0	0	76	0.79
85678--85718	11	3.5	13	83	16	54	24	0	0	75	0.80
86017--86043	12	2.2	12	100	0	54	33	7	0	59	1.25
90134--90373	50	4.9	50	84	10	352	40	17	10	32	1.82
92908--92990	42	1.9	44	90	7	134	14	25	10	49	1.76
92908--92990	21	3.8	21	90	4	121	14	25	10	49	1.76
94234--94276	21	2.0	21	90	0	68	32	9	25	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95428--95475	24	2.0	24	87	0	69	31	10	25	33	1.89
103969--104016	23	2.1	23	92	0	78	41	10	4	43	1.58
115163--115204	21	2.0	21	90	0	66	52	7	26	14	1.67
119956--119996	20	2.0	20	100	0	82	39	14	4	41	1.67
120740--120781	21	2.0	21	85	0	57	54	0	0	45	0.99
120773--120822	13	3.8	13	85	15	68	60	0	8	32	1.26
120773--120822	26	2.0	26	88	11	77	60	0	8	32	1.26
132986--133015	15	2.0	15	100	0	60	20	46	0	33	1.51
135183--135224	21	2.0	21	90	0	66	14	26	7	52	1.67
146371--146418	23	2.1	23	92	0	78	43	4	10	41	1.58
154912--154959	24	2.0	24	87	0	69	33	25	10	31	1.89
156111--156153	21	2.0	21	90	0	68	32	25	9	32	1.88
157398--157479	21	3.8	21	90	4	119	50	10	24	14	1.75
157397--157479	42	1.9	44	90	7	134	49	10	25	14	1.76
160014--160253	50	4.9	50	84	10	352	32	10	17	40	1.82

Tables:   1

The End!