Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NC_071219

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 824625
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27


Found at i:32557 original size:12 final size:12

Alignment explanation


    Indices: 32520--32561  Score: 50
    Period size: 12  Copynumber: 3.4  Consensus size: 12

      32510 AAGAATAAGA

                     *  
      32520 GTTGCTCTTCTT
          1 GTTGCTCTTGTT

                          
      32532 AGTTGC-CTTAGTT
          1 -GTTGCTCTT-GTT

                        
      32545 GTTGCTCTTGTT
          1 GTTGCTCTTGTT

                 
      32557 GTTGC
          1 GTTGC

      32562 AGTTTGGGAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  12   16  0.62
  13   10  0.38

ACGTcount: A:0.05, C:0.19, G:0.24, T:0.52


Consensus pattern (12 bp):   
GTTGCTCTTGTT

Left flanking sequence: Indices 32020 -- 32519
CAGGGAGGGGCTCTCTCTGAACAACCAACGAAGCAGAAGGCGGTGCGGGAAAATCCAAGCGACAG
AGCCGATTCTTAAGTACCTGACCAGTATGACCTGGTGGGTGCAGCTTGCTCTTGCGTCTATTACG
ATGCTTTAGGTCGCTTTCTTATCTAGAGCGGAACTAGCCTGAAGGAAGGGGCGCTCAACAAGCCA
TGGATAGCTAGCCTTAGCTCGCTTCTGTAACCATGCGGTGCGGGACGATGTGATGAACAATCGTT
CGAGAAGGGAAGGTCTTAGAAAGGGGCTTCGAAAACTTCTCTCTTTACCTACACCTTGAACAAAC
TATTATGCTGATATTGATCGAGTAAGGCTCCACCACCTAAGTGCAAGGAGTTAAGCCGATCGCTT
TATACAGAAGGAGGAGAACGTCCCTAGGGCGGATGGTGACACATGCCGTTGACCACCTCTACCTT
CTGTTATTCTATAATCAAATAGGCCAACGAATAGAAAGAATAAGA


Right flanking sequence: Indices 32562 -- 33061
AGTTTGGGAGGAGGGAAAAGCGAGTCTTAGAGATCAAGCCACTCGCACTTCGGATCACCGGACTA
TAGCTGAGGCCAACCATATGGAGGTAGGGCGCCGCTCACTACAGGGAAATAGGAAAACCCAGCCC
TGATTGAGGTACCGGCTGGAGGAAGTGAGTGTTCTATCGAGGGAAGAACCGTCGATCCAGGCTCT
TAGGCCCTTACGACGATCTACACCTGGCCCTTCTAGGCCTACTTACAACCTCTTGCTTGTCTTAG
GCTCACTTCTTCGCATTCCTACCCATAGAATGAGTTATAGGCTTCTGGAGCAGGGCAACGAAGGC
TGCTTCTCTTCCCCCTAAACAGGCATGTGAGAATCAAGTAAAGGCAGTCAAGTAATGCTGTCGGG
GAGCTAATTCCTCTATTTAAGTAGCTCACCCGTAGAGATATGAGACCCGTTTTCTAGCGATTATA
TTAGTGACTAAGGTAGTCGGCTCGCGAGTTCTCTTTCCTCCACGT



Found at i:35469 original size:15 final size:15

Alignment explanation


    Indices: 35449--35479  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

      35439 CAGCTACAAA

                     *     
      35449 GCCGAAGTCGAAGAC
          1 GCCGAAGTCCAAGAC

                           
      35464 GCCGAAGTCCAAGAC
          1 GCCGAAGTCCAAGAC

             
      35479 G
          1 G

      35480 AAGCTTGCTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.32, C:0.29, G:0.32, T:0.06


Consensus pattern (15 bp):   
GCCGAAGTCCAAGAC

Left flanking sequence: Indices 34949 -- 35448
TTTCGGATCCAGCAGAAGAAAGAGAAGAATGTGGTGGAAAGAGGTAGCTTGGTATTGATCCCATT
GGCTCGGCATCAGCATCAATGGCACCACTCGGGTCATATGTCCCAGGTAGAGGTGTAGGAGAAGG
AGTTGAATCGAGGTACTTACTTCCCTCTTCAGTGGATGGAGGAAGGAGAGATGGTTAGTTCGGGT
TACCGGTCAAAGGTTCAATCTCACACTTCGACTTATCGACTTATTTCAATCTCACATTTCGACTT
TAAGATAAGGTCATCCAAGCAAGCACTGATTCCGGGTTCGGTTAAATCAGCTGCAGGAAACCCCT
GACAGCAACTCATAGCTACATTAGCTCAAGCAAGAACAAGAAGCAGCCTTAGCTACAAAGACGAA
GTCAAGGACAAAGTCAAAGACACAGGCTGAAGTCGATCACCAAAGCCGGAGGCTGAGGTATATCC
TGCACTGAAGCGGAAGTCCCAACGGCCGAAGGAAGCAGCTACAAA


Right flanking sequence: Indices 35480 -- 35979
AAGCTTGCTTTGCTCAAGAAAAGAACAAGAAGCTCCACTCGTAGCTGCTAAGTAAAGAGACTCCT
GGCTTAGCCAGTCCCGTGCAAACCCCAACTCGAAGAGCAAACCGAAGGAACTAATGATATTCTTG
CCCCTATCTGAGAACATCTCGACATTGGCAGGCTTACTGAATTAAACCCTTTGCCAAGGCAACTC
CTTAAGCCAAGGACAAGGTCCGAGGGAAGCAAGCCGATTTCATTGTCATAGAAACTCCCCCTTTT
TATGTTCTTTTCGCTATAGACCAATACCTTATTTGAGTCTTATTCACTAAGCGAGTACTTAGACA
TGTACCTAAGAGGATGAGACGGCCTCAGGTCTTATTTCTTATATAAGCTAATCCATGCCCACAAA
TGAAGCAACTGTTCCCTTTGGGGAGTAAGGCTGACCCTTTTCTTTCAATCCTATTGGCCCATTTC
GAGAATAAGAGTAAGCACTCTCCTTGTCATAGTTCGTAATCGAGT



Found at i:40612 original size:19 final size:18

Alignment explanation


    Indices: 40572--40614  Score: 50
    Period size: 18  Copynumber: 2.3  Consensus size: 18

      40562 AATAGAAAAT

                        *    *
      40572 AGAAGAAAAGCGCTAGAT
          1 AGAAGAAAAGCGATAGAA

                   *           
      40590 AGAAGAATAGCGTATAGAA
          1 AGAAGAAAAGCG-ATAGAA

                  
      40609 AGAAGA
          1 AGAAGA

      40615 GAAGAAATAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  18   11  0.52
  19   10  0.48

ACGTcount: A:0.53, C:0.07, G:0.28, T:0.12


Consensus pattern (18 bp):   
AGAAGAAAAGCGATAGAA

Left flanking sequence: Indices 40072 -- 40571
CAACAGCCCTTGCAGGTGAAGAGAGAAAAGTATCTCCTCCTGCCTTAAGAGTGACGGTACGGGTG
GTACTTATTCGCAAGTACCACCGCTGCCCTCAGCTATGCTCCATCATGCTTTAGCAATACGTTTT
AAGATTCTCCGTTAGGATGTTCATTCATGTTGGTTGTTGAGAGTGACGGTACGAGGTCTCCTTCA
CGGTACGGAGACGCTCTGCCCTTAGCGATTATAGTCCCGATCGCCGCCCGGAGCTACAAGGGCCA
GTCGAAATCACTGCGGGGCAAGACACGGGATGAAGTATCATAGATTGTCAACGAAAGTGTGAGAA
GTATTGTCATAATAGAGCGAATCTTAATGATAAGAGTCGCTATGACTTGGCTCTCTTTATGCTCT
TATCGTTCTCTTAGCCTGATCCTTTAACTGGAATAATCTTAAAAACAAAGTTGAATAGAACCAGA
AAGGCAATGTTCAATCTTAACAAGATTCCCATATAAATAGAAAAT


Right flanking sequence: Indices 40615 -- 41114
GAAGAAATAAAAGAGTCGTCTCATTAGAAATGGGTAATTTGTTTGAGCTTTGACATAGCATTCCG
TTCGACAAAGCGGCAGGGCCAATGTGACTGCAATAGCGCCCACTGGCATTCGTGTCGGGTCGCAG
TCCGGTATCCTTTAGCAGCTGTAAGAAAAGAATTTCTATGTCTCTGTTCTCATATGGCTAGCTAG
TTAAAAGAATAGAAGTTACTCGCCTCCATGCGAGGAAGCAGCTGACTCCTTTTCAATAGAAAGGA
ATAGCCCCAGCTGGCTGGTCAATCTCAGAGATCTTATCGGCCGGCAAACCGGAGACGGACGACCA
CGGTCCCGACCTTACCAGCACCTGAGGTTTACTAATCAATGAACCCCCGAACCCTACTTTCTTTT
CTGACAAAGTCATCAACCAAGCCTAACCTAACCGGTAACGACATGTTGTTGATATTGATTGAGTT
GGCGCTGACTGAATCCATCCATAAACCTAGACCCCGGTAACCTTC



Found at i:53768 original size:13 final size:13

Alignment explanation


    Indices: 53750--53775  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

      53740 GGACGAGGAC

                         
      53750 TCATGTTTCTGAG
          1 TCATGTTTCTGAG

                         
      53763 TCATGTTTCTGAG
          1 TCATGTTTCTGAG

      53776 ATTGATTGTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46


Consensus pattern (13 bp):   
TCATGTTTCTGAG

Left flanking sequence: Indices 53250 -- 53749
GATTCCTATCCTTCCCGGCTGTTGGCCTGTTTATATAAATTAAGAATGAAGCCTATTGGACCGGC
CATTATATATATATTTATTATTTTTGCATGAAACCAAAACCCGGAGATTCACACTCCCACTCTTA
TGCATACGGGGTAGGCTACTTTCGCGCTTCGGAAGGAGGAAAACAGAAGTGGGAAAAACTATTTA
AGGTCCTTATTTCGTACGTCCACTCGTGGGCAGCAACAAGGAAGTTATATATTCCCACCTTCCCC
AACTAGGGCTTTGACCACCCTACTTTCTGAATCAGATGGGGCACAGCCCTATAGCTTTTCGGCGG
ACGAGTCGTCTTTGGAAGATATGTATGTCAGGAAAGCTGGTGTAGTGGTTTAGACAGCGGAACAA
AAGGTGTAGGGGCCCGGAAGGGAGAGAGATCGACTCGCAGAACCGTTTACGATTCCTAGCTCCCC
ATTACTCAATAGGGACTTGGACTCGGAAGAATAGAGGACGAGGAC


Right flanking sequence: Indices 53776 -- 54275
ATTGATTGTTAGGTATCGAAAGTCGCTTCTCCTGCTGCTTCTGAGCTGGCGGTAACAAAGAAAAG
GAAATAAAATCAAACAGAACATGGGAGGAGGCGGGGAGAAAGCAATAGCGGTGATTGATGATAGA
AAGTGACTTTGTAACCTACCTTGACTCCACCTTCGTGGAACGGGAGTGGCCCTAGCGGGAAGGGA
TGAACGAGCTCGCTCCAGGAGTGGGGAACTTTATGAACTATATTTAGATCTTCCTTCCGACTGAC
CGGCTATCTTATCATTTCTTTTAGAGTCATTTAGATTGATTCTTGTTAGAGTGACTTTATCTACC
TACGGAAAAGAAAGAAGGCTACTGCTCTACTGCCTGACTTGACTGACTGGACTGCTCTTTAAGGG
AAGGGCCGAAGGAAAGGAAGCTGACTAACCGTTTACTCTAAATATACTTACTCGAAGCAGATTGG
CTTCTGAGTGAAGTGAGTGAAGAAGGATCTCTTTGGGTCTGGCTA



Found at i:55017 original size:13 final size:13

Alignment explanation


    Indices: 54999--55023  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      54989 CTTAACTTAT

                         
      54999 TTTTTTTTATTTA
          1 TTTTTTTTATTTA

                        
      55012 TTTTTTTTATTT
          1 TTTTTTTTATTT

      55024 CTATTCTATT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88


Consensus pattern (13 bp):   
TTTTTTTTATTTA

Left flanking sequence: Indices 54499 -- 54998
TAAGTTGATCATTGCTCGGTATTGAGTGATTGAGGAAGGCTCGGGTGAGGCTTCCCTCTTGAACG
GTGTCCTGTATTTATTTGTTGTTACCGCTCCGACTTGCTTCCCTCTTGCTTTATAGATCCAATCT
CGCCCTTCTTTCCTGAAGCTTTTCATGGACCCTTTCTACTCTACCGCAATCGAAGTCTTGCATTG
AGTACTAATGTGGAGGGGCCCAAGCCAGCCAATCCCCCTGACGCCCACTAAGATCCACCCATGAT
TCATCGAACCATTCCTTCGCGGCCGCCATGCATGTGAATATTCATTTATTCTCAAAGGAGAAGAT
TCTTCTTTTTACCAAACATATGCGGATCCAACCACGATCTTAATCTTATAATCTTCTAATAAGAA
CAAGAGATCTTCCTCAATCAATCCCCTTGCCCTTCATTCTTCGAGAATCAGAAAAATCCTTTTCG
AGTTTTCATTTTTTTGAATCTTTTCTTCTACTTTACTTAACTTAT


Right flanking sequence: Indices 55024 -- 55523
CTATTCTATTTTCTCTATTTTATTTCCCTCTCTTTTCTTTTTACTCCCTTCCATCATTCCTTAAG
TCCCATAGGTTTGATCCTGTAGAATCTGATCCATTTTCTCATCGAGCGAAGGGTACGAAATAAAT
CTGATTTATTTGTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTTCTCTTCCTCTATCCCT
TCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTGTATGAATCGATATTATTACA
TTCCAATTCCTTCCCGAGACCTCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGC
GTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTT
TCGTGCTTTGGTGGGTCGTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATA
TGATCCGATCGATTGCGTAAGGCCCGCGGTAGCAACAGAACCGGG



Found at i:55588 original size:25 final size:22

Alignment explanation


    Indices: 55541--55585  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

      55531 TACAGAAAAG

                                  
      55541 ACAGTTCTTTTCTATTATTATT
          1 ACAGTTCTTTTCTATTATTATT

                                  
      55563 ACAGTTCTTTTCTATTATTATT
          1 ACAGTTCTTTTCTATTATTATT

             
      55585 A
          1 A

      55586 TTATATTATT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.24, C:0.13, G:0.04, T:0.58


Consensus pattern (22 bp):   
ACAGTTCTTTTCTATTATTATT

Left flanking sequence: Indices 55041 -- 55540
TTTTATTTCCCTCTCTTTTCTTTTTACTCCCTTCCATCATTCCTTAAGTCCCATAGGTTTGATCC
TGTAGAATCTGATCCATTTTCTCATCGAGCGAAGGGTACGAAATAAATCTGATTTATTTGTCGAT
CAAAAGTACTATGTGAAATCTTCGGTTTTTTTCTCTTCCTCTATCCCTTCCCATAGGTACAGCGT
TTGAATCAATAGAGAACCTTTTCTTCTGTATGAATCGATATTATTACATTCCAATTCCTTCCCGA
GACCTCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGCGTGAGCTTATCCATGCG
GTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTC
GTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCG
TAAGGCCCGCGGTAGCAACAGAACCGGGTAAAGTATACAGAAAAG


Right flanking sequence: Indices 55586 -- 56085
TTATATTATTATTTATTAGTTAGTTAGTGATCCCGGCTCGGTGAGTCCTTTCTTCCGTGATGAAC
TGTTGGCACCAGTCCCCTATTTTTTCTCTGTGGGCCGAGGAGAAAGGGGGGCTCCGCGGGAAGAG
GGTTGTACCATGAGAGAAGCAAGGAGCTGTTTCAAATATACAACATGGATTCTGGCAATGCAATG
TAGTTGGACCCTCATGTCGATCCGAATGAATCAGCCTTTCCACGGAGGTAAATCTTTGCCTGCTA
TGCAAGAGGATAGCAAGTTACAAATTCTGTCTCGGTAGGACATGACATGTATTTTGATTACTATG
AAATTAATAAATGAAGTAGTTAATGGTGGGGTTACCCTTCTATTTTTTGTAGTGACGAATCTTGT
ATGTGTTCCTAAGAAAAGGAATTTGTCCATTTTTCGAGGTCTCAAAGGGGCGTGGAAATACATAA
GAACTCTTGAGTGGAAATGGAAAAGAGATGTAGCTCCGGTTGCTT



Found at i:55594 original size:14 final size:15

Alignment explanation


    Indices: 55575--55603  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

      55565 AGTTCTTTTC

                           
      55575 TATTATTA-TTATTA
          1 TATTATTATTTATTA

                           
      55589 TATTATTATTTATTA
          1 TATTATTATTTATTA

      55604 GTTAGTTAGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    8  0.57
  15    6  0.43

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (15 bp):   
TATTATTATTTATTA

Left flanking sequence: Indices 55075 -- 55574
CATCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGAATCTGATCCATTTTCTCATCGAGCGAAG
GGTACGAAATAAATCTGATTTATTTGTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTTCT
CTTCCTCTATCCCTTCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTGTATGAA
TCGATATTATTACATTCCAATTCCTTCCCGAGACCTCCCAAGGAAAATCCCGAATTGGATCCCAA
ATTGACGGGTTAGCGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTG
AAAGATCCTGGCTTTCGTGCTTTGGTGGGTCGTCCGAGATCCTTTCGATGACCTATGTTGTGTTG
AAGGGATATCTATATGATCCGATCGATTGCGTAAGGCCCGCGGTAGCAACAGAACCGGGTAAAGT
ATACAGAAAAGACAGTTCTTTTCTATTATTATTACAGTTCTTTTC


Right flanking sequence: Indices 55604 -- 56103
GTTAGTTAGTGATCCCGGCTCGGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCCCT
ATTTTTTCTCTGTGGGCCGAGGAGAAAGGGGGGCTCCGCGGGAAGAGGGTTGTACCATGAGAGAA
GCAAGGAGCTGTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGACCCTCATGTC
GATCCGAATGAATCAGCCTTTCCACGGAGGTAAATCTTTGCCTGCTATGCAAGAGGATAGCAAGT
TACAAATTCTGTCTCGGTAGGACATGACATGTATTTTGATTACTATGAAATTAATAAATGAAGTA
GTTAATGGTGGGGTTACCCTTCTATTTTTTGTAGTGACGAATCTTGTATGTGTTCCTAAGAAAAG
GAATTTGTCCATTTTTCGAGGTCTCAAAGGGGCGTGGAAATACATAAGAACTCTTGAGTGGAAAT
GGAAAAGAGATGTAGCTCCGGTTGCTTCGGAAATGGTAAGATCTT



Found at i:73888 original size:34 final size:33

Alignment explanation


    Indices: 73845--73910  Score: 123
    Period size: 34  Copynumber: 2.0  Consensus size: 33

      73835 TATGCTTGAT

                                              
      73845 ACTACAATAAGTCTTATTCCTAGTCTTCCTTTTC
          1 ACTACAATAAGTCTTATTCCTAGTCTT-CTTTTC

                                            
      73879 ACTACAATAAGTCTTATTCCTAGTCTTCTTTT
          1 ACTACAATAAGTCTTATTCCTAGTCTTCTTTT

      73911 GATCTCATTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  33    5  0.16
  34   27  0.84

ACGTcount: A:0.24, C:0.24, G:0.06, T:0.45


Consensus pattern (33 bp):   
ACTACAATAAGTCTTATTCCTAGTCTTCTTTTC

Left flanking sequence: Indices 73345 -- 73844
AAGGAAGCTGAATGGCACTGAAAGAGAGACTTCAGTCGGTACGGTACGCACTCCGGGTGTAACAC
CCTGCCTTAGACCTAACATCCCTAGCAGCCCTAGCTTCTTTCCTAGCTTCCCCACCTTCGGCACT
CACTCTTACTACCATTAGAGCATGGCAATTCGATTAAGATTTGGCCGAATAAGCGTTTCATAAAG
GAATCAAGATGAAGATAGAAATGATTCTAATAATAAAGAACGCTCTTACTCTTACGACCCATAAA
ACGCACCTCAAAGCTCTCAGTATTACGACTGGTCAAAATGTAATAAGCAGCGGCTAAAACAACGG
CTTCCATTTATGCCTCTGTTTATGCACCGGTTGATGGATGCTTCTTTTGATTCAGCTTCTTTCTG
TGAAGGTGAGAGCGTTGATTGAGGCCATCTGCTCAACTGCTCCCTTTAATTCTTCTGGAGTCAAT
GTTTCTGGCCTGAAGGAAGTTAAAGAACAACTCCTTATGCTTGAT


Right flanking sequence: Indices 73911 -- 74410
GATCTCATTTCGAATCTTTATATAGCTGCAAAAGTCATAGCCTGGTTTTCTACTAATAACATCTC
CGTTTTTTCTCGAATTTTTCATCTTTATATAGCTGCAAAAGTGATAGCTTAGGAGTGAACCATGG
TTCGGTGGTCAGAAGAGATCGAAGGGTTGGATGCATTCTTCCTTGGATGCTACTGTTGCTAATCG
GTGTTGCCTTGCAGTGAGGGGCTAATGGGATTGATTAGACCCGAGCGAATGAGGCCCCGCAGGGC
ACAGTGAGGCCCCGCCGATTGAGGGATGAAAAACAAAAAGAACCTCGCCTCTATGTAGTCAGTTA
TGTAGAGAGGCAACATGCGCGGATGGCCCGTATGCGCTGCATCCTTTTCGGTAAAGGTGATGGGT
TGAGGTGCGGTGATTTGCCCTATCATTGCCTTCAGGCCTTCCGGTGGGGTATCCTTGGGAATGTG
AGCTGACTTGAGCCCACTAAAGAAGATGTTTAATAAGATGTGGGA



Found at i:87666 original size:22 final size:21

Alignment explanation


    Indices: 87628--87670  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 21

      87618 CTCCCAAACA

                                 
      87628 GCAACAACAAGAACAACTCAG
          1 GCAACAACAAGAACAACTCAG

                    *    *        
      87649 GCAACTAAGAAGATCAACTCAG
          1 GCAAC-AACAAGAACAACTCAG

      87671 AAGGAGCATC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21    5  0.26
  22   14  0.74

ACGTcount: A:0.49, C:0.26, G:0.16, T:0.09


Consensus pattern (21 bp):   
GCAACAACAAGAACAACTCAG

Left flanking sequence: Indices 87128 -- 87627
CTGCAATACGCGTGTAGCTGCAGAGCAAGGAACTCAGAACTCATTTCACTGATTAGCTCATGGGG
CTGTTCATAGCTACAGGAACAACTAAAGTAGCTCTTTCAGTCTTGAGTTAGTACGCATATATGAT
CCGTTCACTCGGGCACCTCACCCGAGGTACCCTCTCTCACTCAACAGCAACCCTGGCAAGCACTA
ATAAACTGAATCCGAGGTAGTCCCTGGCAAGCACTCACGAACTCAAGCACTAACAAGAACAGCAA
GAGCAAGAGCAAGTGAAACTGAGAACAAGTGGTCCAGTCCGCTCGTCGGACTCGCTCGCTTGGCT
TGGCTGGCTTGGCGGTACAGCAACAGCAACAAGTTAAACCGAGAACGAGGGTGGCGGAGGCTCGT
CAAACTCGCATCGCTTCGCTTGCACTCACGAACCAAGCACTGGCAAGGAGCAGTCCTAGCCATGC
CATCCCAAGTGCCATGGCTGGACAGAGTGCGCCCCCTCCCAAACA


Right flanking sequence: Indices 87671 -- 88170
AAGGAGCATCAACTCATCGAGTAATTGCGTAGATGATCAATGAACACTGATCAGGATTTCAGATA
ACCATTTGTTTGCTGGGGGATTTGCGTGTCATAGAAGGGCAGGAAAGGCTGACTTGAGATGCTTC
CGAAACGCTAGTGAGAGTTAGTGGGATGCTTCCCCCGCTCTACCCTTCGAGTCCCCCGCGAGGTC
TAGCGAAATCTAGACTGGCAGCGCTTGGTTCTGTACAAAAACTTCGCCTTTGCAACTAGTACCCG
GGAAAGGAACAAATCCTTAGTCAGCTTCCGCCCGGGCTACGGTTACCAGAGGATAAGAAGGCCGG
TCAGTACGAGAAGGCATTGATTGATAGAGCCGTCCACGGACACGCCAACCGGGATCAAGGGATTC
AAGCTCTATCGTCTCTTTGTGCAGGAAAGGTCCAACATAAGGCTCGGAACAAAACAGCTGTCACC
CGAGCTAAACCACTTCCAAGCAAAGAGACACGCCAAGCAAACCGT



Found at i:108327 original size:32 final size:32

Alignment explanation


    Indices: 108286--108349  Score: 128
    Period size: 32  Copynumber: 2.0  Consensus size: 32

     108276 CCGCTTGTCA

                                            
     108286 ATTCTTGGTGTAATACTCACTCGTAAATGATT
          1 ATTCTTGGTGTAATACTCACTCGTAAATGATT

                                            
     108318 ATTCTTGGTGTAATACTCACTCGTAAATGATT
          1 ATTCTTGGTGTAATACTCACTCGTAAATGATT

     108350 GGTGTCATAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41


Consensus pattern (32 bp):   
ATTCTTGGTGTAATACTCACTCGTAAATGATT

Left flanking sequence: Indices 107786 -- 108285
TCTTGGTAAGCTTGGGAGACTTAGAAAAGAGAATTTCGTTGCGTGCGAAGCCCCTCTAGTTGCAG
TTCAAAGTGTTGCTTTCTCAGTCAAGTCGACAAAATCAATCTCCGGCTTTGATCAGATAGTTTTT
CTTTCTGCTCTGTTTTCGAGGGTCAAGCTCTATCTCCTCTGACTCCTTCACGTGCTCTAAAGGTA
AGTTCCGTAAAGCTGTTAGGAAACTAAGGTGCTGTGAGAAAACCTCTTTCTGGTACGGGTCACGG
GAGGGAAAGTTCTGTAAGTGAATATCTCTCTCTGTTGTTAGCTGTTTTTAAGACTTTAGACCATG
TGTTTTGGTCAGCGAAAGCGTCCCTTCTTTTTATTTTTCTTTCGTGGCCGAAAGAGGGGAAGGAA
GCGGAGGGGAGTTTCGGGAACAAAGCCCCCTTGAAAGTTAAGCCAGCCCTATAGTTTATTATATT
TTCGCTATATCAACATAGCCAACTAGAAAACGCATCCGCTTGTCA


Right flanking sequence: Indices 108350 -- 108849
GGTGTCATAACATTTTTTCACTGATCAGGTGTGACTTACAGGGCTAGAGGGCTCATCCGTGTAAG
AATTAGGAATTCCTCTTCCAACTCGTCCCGGAATGGGCGTTATGGCAAAGAACAAGAAGAAAACG
AAAGGAGGAATTTGTCCAATAGTAACAAATGGTGCCTCCACAGGTTGACATCCGATCCAACCTAG
TAGTAAGCGATCCGCCAAAAGCAACCAAAATATTCCTTGGTGAATCGGGCGAAAACTTGAACTAC
GCACATACATACTTTTAAAAAAAGGTAAAGCCAACAGACATATAGAAACTGGTGCTATTGCGGCT
ACACCTCCCGATTTGTCAGGTATACTACGAAGAATGGCATGGATCGGTAGGAAATACCATTCCGG
CACAATATGAGGCGGGGTGGGCATCGGATTAGCAGGTATATAATTGTCGGGATGCCCCAAAACAT
TAGGAGCATAAAAAATCCAAATTGAAAAAAAGATAGCAGAAGCTA



Found at i:131810 original size:19 final size:19

Alignment explanation


    Indices: 131786--131823  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

     131776 AGCGCTAGCG

                     * *       
     131786 CGCTCATCCGTTGCTTGTT
          1 CGCTCATCCCTAGCTTGTT

                               
     131805 CGCTCATCCCTAGCTTGTT
          1 CGCTCATCCCTAGCTTGTT

     131824 TCTAGCTCTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.08, C:0.34, G:0.18, T:0.39


Consensus pattern (19 bp):   
CGCTCATCCCTAGCTTGTT

Left flanking sequence: Indices 131286 -- 131785
ACCAGATCCTCTACCTTACGGTTGAGAGCTTCTATCCTAGCTTTGACATCATCCCGGACTGAATA
CAAACCTCCTTTCTTTTGAGTAGTAGGTCTGTCTCTGAAACTAGAGAAGTCCCATTGCTGGGGTT
CTCTCTGCCAAACTCTCCAGAAAGGAATAGGCATCTGACTTGCTCAGTTGCAAGAAGCTACCTTT
GAACATTTTGATATGCGGTGGGGTCTCATATACAATTGATCGCCTAGTATAGTTGCGCTTTCTTT
TCTTCTTCTTGGTCTCGTCTATCTTATCGGTCTCGTAAACCCTATCCGGCTTGGATCGATAGTCT
ACCATTTCCGCTGGGGTATGGAATGCCTAAATTCTGTATGTTCAACGCAGCAAGAAAACGCAATT
ATTTAGTAAAGGGCGTGAAGCAAGAAAACGTATGCGCGTGAAGCAAGAAAACGCCCTATATATGT
AAAGGCTAACGCAATTAACACGAACTGGGGCTGGTAGCGCTAGCG


Right flanking sequence: Indices 131824 -- 132323
TCTAGCTCTTCTCTTCTTTCTAGCTGCTTATATCGCATATCTTTAAAAAAGGCAAAGCTATAATG
TCAGATTGACGAATTCGTTCGTGCGTGCACCAAAATGGGCAAAGTTGAAAAGGGTATCACTGGCT
TAGCTTAGTAGAAGGGTTGGACTCAGTAATAAGGACTTCACTGGCTTGCCTTACCCATTCAGGGG
TCCATACCACGAAACAAGCAAAGTATGCCCTTTATTTCACTAGATAGCTAAGGTCCTGTTATACC
GTACGGACGCGTGCTTGTCCAGGGATGGCTTGATCAATAACATCTGTCACCGAGAAAGGTTTTTA
GATGGATGTATGGGAAGTTAGAAGTGTGCGATTGCTGCTCCCATTGCTTCTTTGCCTACGCTTTC
GCAATACTCTCCTATGCATGCAATACTCTCTTTAGTTCTTCAAGCAAACTCCCTTGCTGTAGCTA
CAGATTGCTTGCTTTACTAGTGTTGCATTCGCCGGCCCCCTCTGC



Found at i:216286 original size:19 final size:19

Alignment explanation


    Indices: 216262--216300  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     216252 CGCGCTAGCG

                               
     216262 CGCTCATCCGTTGCTTGTT
          1 CGCTCATCCGTTGCTTGTT

                               
     216281 CGCTCATCCGTTGCTTGTT
          1 CGCTCATCCGTTGCTTGTT

             
     216300 C
          1 C

     216301 CCTCCTGACC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.05, C:0.33, G:0.21, T:0.41


Consensus pattern (19 bp):   
CGCTCATCCGTTGCTTGTT

Left flanking sequence: Indices 215762 -- 216261
CTGGAAAAGACGAGCAAGGAAAGATTTAGGCTAACAAATATATTACTCTAAGGGCACAACTTGCC
TCGAGCTTCGACGTTCCCTAACGCTTCAACAACAGAACAGACCTTCATTGTCAGGCACAAGCCTT
CCTCTTCGTCAATGATTATGGCTCGCTCCTGTCTTGTAGTTCGATACACTACTCTAAGGCCAGTT
GCCTATACAACATCTTGACTTTCTTTATAGTACAGTCAGCTTTGGTTATCGCTACACCCTCTCTA
GACAAACGATTTGATTCAAGCCACTCCACTACTGGTACAGTAGCATCCTGCCTTACTAATCGTAT
AGGCACCCGGGAACCCTACTCAGTAAAGAAGGGGATAGAGAGGCAGGTACGCAGAAAGAAGAAAG
AAGCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCGTTAGCGCTTATCC
GTTGCTTGTTCCGTTGTTTGTTGCGCAACGGCTTTCGCGCTAGCG


Right flanking sequence: Indices 216301 -- 216800
CCTCCTGACCATACAACGACTAGAAACTAGAGCTCCTTGCACACTGACTTCAATCGTATAGAGAT
TTCCCACTGCTTACAAGTTAGAATAGGGTCGATACCAGAAACTACGACTGAAACCTACCTCTCGT
CCGGTGATAGCAATATAGTAAGTGATTGCCTACTTTATATGTCCGGAGACGCTTACTGCACTGCT
TCTTCTGTCAAGGCAGGCAGGCGGTTATCAGGATGTAGACAAGGAGGTAGGCTTAGAGCCAGCAA
TAAAACTAGCAAAGACAGCTCTACCGCGAGCGAGTAGCCTTTGCCAAAGAAGCGCTAAGAGCTTA
CTTGTTGCCTTGCCTGCGTTAGGAGAGGAGTGAAGGGAGGAAAGAAGAGTTGTACCGAAGACTTT
CTCTTAGCATACAAGACAGAGTTCCCTTAGCCGTGCAGTGAGCGGTACCCCATCCACACAGTGCT
GTCTACGGATCCTTTCCCGGATTCGGGTTAGTATTAGTCTCCCTA



Found at i:230599 original size:21 final size:21

Alignment explanation


    Indices: 230573--230614  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     230563 TAATATTCCG

                                 
     230573 GTCGAATTAATCAAATGAAAT
          1 GTCGAATTAATCAAATGAAAT

                                 
     230594 GTCGAATTAATCAAATGAAAT
          1 GTCGAATTAATCAAATGAAAT

     230615 TTGCCTCACT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.48, C:0.10, G:0.14, T:0.29


Consensus pattern (21 bp):   
GTCGAATTAATCAAATGAAAT

Left flanking sequence: Indices 230073 -- 230572
TCGAAGCAGCTACTCTTGCTGCTGCAAAGAGTGGACCACTCCCTTAAACTAATTTCGAAACACGA
TTGTCGTTCTCTAAGTCATCGGCAAAGCTTCTAGACTTGGAGGAGTCCCACCCTCACCTGGATTC
TTATCTGGCTCTCATTAGCCTAAATCCCCAATAAAGGCTTCCCTGTCCTGTTATCAATTGACTGG
CTCAACTACTTCTCCCTCGCCATCAACAGCACAATCGCAGAGGCGGGGGCGGTCCAATCTTGAGA
CTGACGAGCAAGTGCGTTCACTTGCTGACCCTAGGGCTATAATCAAGGCAAATGGGTAAGAAAAG
GGATGAGATAATAGCGATTCAAATGACCTTCGTTCCCCTGATTAAAGGTATGAGCACCGCCTTGG
TGCTTGCACAAAGGAATCTTCGGAGATTGAGAAGACGGATTCATAAATAGCTGCCTAACTTGCGC
TCTTTAGTTGTTCGAACTGAACGGTTTCATTTTAGTAATATTCCG


Right flanking sequence: Indices 230615 -- 231114
TTGCCTCACTCGTAAGTAACTTAGTATAAAATTACGAAGAAGATTCCTCTCGTCTATCGCCAATT
TCTTTGATAGTATGGCAGTAGTCAATTAAGAGGGGACGTTTTGCTGCAGCGATTGCAGTCGCTCC
GAGAGCAGAAGATGCCGGTCGTAAAGGATGTGGTACTCGAGCTGATCCCCTGTCGTCTGAGAAGG
AACTCTCTTTTCCCAGAACTGCAATAGCTGTGACCCAGCATTGGTATGTTGGTCTGCCCTCAGTC
TGGATATCGGCGAATTGTCTCGTAGGTGGTTACTGCACTGTTGGTATCATCGGTAGGCGGTGTAG
GCAATACAAGGAAAATCATGAGCCTTGTAGTCGTAGGGGAAGTTGGGACCCACTGTTAGGTGGGC
CCTAGTGCTAGAGCATTTTCGTGCTCCTTTCACTATTGATTGATAACATATCTGATTTCATCATG
CACCTCCATTAATGCCTAAATTCCTTACTTTACAGAGCCATTCCT



Found at i:248683 original size:9 final size:9

Alignment explanation


    Indices: 248669--248693  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

     248659 TATATATATC

                     
     248669 TAAATAAAA
          1 TAAATAAAA

                     
     248678 TAAATAAAA
          1 TAAATAAAA

                   
     248687 TAAATAA
          1 TAAATAA

     248694 TTTATATTCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24


Consensus pattern (9 bp):   
TAAATAAAA

Left flanking sequence: Indices 248169 -- 248668
TTCGTCGAGCCTTTCCTTTAGTGGTTGGGGGAAGCATTCCCTTATCTGAACTTGGCGGGCATTCT
TTCGCTATGGGGTGGGTTTGAACATAGGCTCAAACATTGAAGGGTCCTAGCTACGCCATGCGTTC
AATACCAAAAAAGAAGCCTCTGGAAAGCTGCAGGGATGAACAAAATAGGGCGCTTTCCTGTCTTG
CACTGAAAAAAGGACCTAAGATAAGAGCGTCTTCTCTTAGGTTTATTCCTCCCGCGCCCGCCGCC
GCCCGGCCCGCGTTAGAGGGGGAAGATTAGCAAAGCGGGAAAAGACAGATGGAGGGGGAGCAGCA
TCTTATTCTCTTCGCTAGAACTTCCGGATCGGATAAGCATTCGGAACGGGCTCCGCGTTCATTTC
GTTGGCAGAAACGATCCAATCCATTCGGGGAACCCAAAAAGTGTTTTTTTTTACTTCATTCATAG
ATAGAATCAATGGATAGATAGACATAGATGAACGATATATATATC


Right flanking sequence: Indices 248694 -- 249193
TTTATATTCTCTCTAAAATAAAGGAATAGAATAGACATCCCTTTAGATGTCTATGTATCCTTTCT
CTCTCCATTATTTTTATATTTCTTTCTCTCTCAAAAAATGGAGAGAGAAAGAGCAGATGAATCCT
ATCCCCTATATCGAACACTCATTCCTATCTATTGATAGAAAGATCTTCGTCAAATACCGCTTTGT
CTTTTTTTTTTTTTCTTCCTCATATCCAAGGCAGCTTACCACAAGCACCCCACCCCATACGACTA
TAAGGGGGGCTGTTCGCCTTTTGAATCAAACAAAGTCGTAGGGGCTTCATAGCTACTTTCATTCT
AAAGGAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCTTCAGTCGCAAACCCAAG
AAGCAAGGCCCCGCAATCCAGCAAGAAAACGCCCTATATATATAAAGGCGGCACGCTATTAACAC
GAATTGGGGCTGGTAGCGCTAGCGCGCTCATCCGTTGCTTGTTTA



Found at i:259038 original size:18 final size:18

Alignment explanation


    Indices: 259011--259045  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

     259001 TAGAGCTAAT

                 *            
     259011 CAATCGCAAGTCAAAGGC
          1 CAATCACAAGTCAAAGGC

                             
     259029 CAATCACAAGTCAAAGG
          1 CAATCACAAGTCAAAGG

     259046 ATGGGGCCTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.43, C:0.26, G:0.20, T:0.11


Consensus pattern (18 bp):   
CAATCACAAGTCAAAGGC

Left flanking sequence: Indices 258511 -- 259010
CCGCAACAGTAGGAGCAAACGGAGGCTCAGGAGGCAGAAGAAGAAGAGAAGATAGAGGGGGAGTC
AAGCAATCGTAGGCCATAGCAAGAGAGTCGGCTGACCTAGGCCCTAGCGCGGAAAGGAAAGAAAA
CAGGCTCGGTGCCTGTGAATAGTCCGTCCGAAGGCCGGTGTAACACACCGAAACTGACCAAGCAA
CAGAATGAGAAGAGCGAGTAGTTCCGTCTTTAGCTTGAGGGTAGCTCTCTTCCGTTTGATCGCTT
ACCTCTCCAACACAGTCGAGTCACTCCCTGATCCACCGCTCAACCAAGGCTTTCTTCCAAGAAGG
AAGGGCAATCTAAAAGGATTGAGTCTTAATTCCTATTACTATTCCCCAGCCCTTAGCTCTAACAG
GCTTCAGGTGGTGTGTTCCAATGTACCATTAAGAATTGACTGGGAACTGTTTGAAACTACGTTAG
GGCGAGGAGAGACTCACATAGTGAGGGATGGATACTAGAGCTAAT


Right flanking sequence: Indices 259046 -- 259545
ATGGGGCCTTGCTGCTCCTTCATGCTATAAAGGGGGGGAATCCGCCGAGGAGAAGCCTGGAGGCT
AATGTACGTTCGTTCTGGTAGCTATCAATGGTTGGGATGCGGTGGCCTGGCGCCACTCATCACTT
TGTTTCAGAACAAAAGGTCAAGAAGCTGGATTTTCAACCTTGCGGGACACGAGCCAGATGAAGGC
CGTTAACTCAGAGGCGAAGCCCTTTGCTGGCTGGAATGGTTTCGTGCCTATATAACAAGTCACGA
GATAGGGACCTAACCTACCTGCAACAATAGTTCCGTTCACTGCTAACCGAAGGGACAGGGATTGT
AGACTCTAGACTGAGACGAGACTGGCGAGAGGGAAGGCTAGACCCACTAATGGACTAGTTTGGAG
GGAGGCAGGTTTTAGACACTCTTACGGACTAGGGACGCTGTTCCCTGGAGGGAGGGATTCTCTTC
CTATTCCTACAGTGCAGGGCGGTGTACGAGCCGGGGCGAAATCCG



Found at i:273082 original size:15 final size:15

Alignment explanation


    Indices: 273062--273093  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

     273052 TTTCATCTTT

                           
     273062 TTATTCTTTTTTTAC
          1 TTATTCTTTTTTTAC

                           
     273077 TTATTCTTTTTTTAC
          1 TTATTCTTTTTTTAC

              
     273092 TT
          1 TT

     273094 TACAAAGAAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75


Consensus pattern (15 bp):   
TTATTCTTTTTTTAC

Left flanking sequence: Indices 272562 -- 273061
CATTACCTCCGGTCCAATTGGTGAATGCCACCAGCAATGCCACCACTAGGCTTGCTCCCGGAATT
TCCCTTCACTATATCACCAAGTTCGGTTGCACCCGAAGGGCCTGATTTCTGCGCGTTCCCCTTAG
AATAGAAAGGGAAACCGGTAGCGAAGGTATTTGACTCCCGGGGCAGTCGCGAAGTGAAGGCCGAT
CGAATCAGCGAGTGGAAGTGCGGTAAGATGAGTTTACCGCTGTTCCATATAGATGAGTCTTTAAG
GTCTTGATTTGACAGGAGGTTGACTGGGCGACTATTTATGATTCCCTCCGGTAAGAACAATGAAC
ACGGATCTACCAGCGCAAGACAAGAAGTGAAAATCTCAGTTAGTTAATGGTCCTCACAACGAATC
AGTTGTCCCCCAACGCTTAAGGAGAGATTTTTGTAGAAAAGAAAGGTGTATGTCATGGGCCCTAT
TCTCTATTTGCCAGGCGTTAGTTAATGGTCCTCTCTTTCATCTTT


Right flanking sequence: Indices 273094 -- 273593
TACAAAGAACAGGGATTTGACCGACTCGAACACGGGAAGGCGCTCCCGAGAAAGGGATTGGCTAA
GATTTTATATTTTATTTTCTCTCCCCCATTTCTGTAACCAAAATCGCTTTGACTTATTCGACTAG
ACGGGGAAGGTCTGTCCCTTCTCCACTGGAAGAAAGTAGATGATCACGTAGGGCGAATGAATCAA
AGAAAGGGAAACTTCTCCATCCCAGAAAGCGGAGTTACTTCTTGAATCTTTGAATAGAAAGCCCC
ATTAACCAGACAAGCTGGAGGAGACAAGCTACCTCACAGAAAGGATGACCAAGGAAGGGCCAGTT
GACGCAGCAAGCTAGAGCTATGAAACCGCCCCTTTATCATTTAACTCGTCGGATTATGAATGAGA
TATTCAGACGTCAGCTTGAAGGCTACGATTCCGTTCTTCTGTCTAGATTCCTTGTTGCAAGGCGG
AAGTAAGTCAATTAGAAATATAAACCAGCATAGGCCAAAACAAAA



Found at i:278338 original size:21 final size:21

Alignment explanation


    Indices: 278314--278359  Score: 53
    Period size: 18  Copynumber: 2.3  Consensus size: 21

     278304 CCATCTCAAT

                                 
     278314 CTCTTCCATCTGAACCAGCCG
          1 CTCTTCCATCTGAACCAGCCG

                              *  
     278335 CTC-T--ATCTGAACCAGTCG
          1 CTCTTCCATCTGAACCAGCCG

              *    
     278353 CTATTCC
          1 CTCTTCC

     278360 TTCTTCCAGG


Statistics
Matches: 20,  Mismatches: 2, Indels: 6
        0.71            0.07        0.21

Matches are distributed among these distances:
  18   15  0.75
  19    1  0.05
  20    1  0.05
  21    3  0.15

ACGTcount: A:0.20, C:0.39, G:0.13, T:0.28


Consensus pattern (21 bp):   
CTCTTCCATCTGAACCAGCCG

Left flanking sequence: Indices 277814 -- 278313
GCTTCCTCATCTCTAAAGCTGTTGAACTGATTCTCGTTCCATACGAACAAACTCGGAATTACCTT
GTACAATTATATTAGAGTCCCTCTTTCTTTTTTTCAAGTGAAATCGACGATCAAAGAACTAGAGC
CGAAAGTGCCCTTGCTAAGGCGAGTCTCTGCTCGCCGAGTCCATCATCTTTCTCACTCCGGATAT
ACGCCATTTCAAGCCATGCGTTCTTTTGCCTTGATTCAAGATAGAGTGACTCTTCATCGTACTGA
TTCAACGCGAAGTGAGTGGTCCATTTTTTGCATCCGGCATTCCTATTGATAGTTGCTTCTGCTTG
TAGCACGCATGTTGCTTTTGTTGCTGATGACCATAGGGTCTTCAATTGGAAAGCCCTTTTGAAGC
CGGATAAGTGTGTTCAATTGCCCGATGCCCCATTACAATATCAGGCAATACTTGATAGCTTGTTT
TCCGGGCTTGGTTTCGAGAGGCCACCACAGCTTGACCATCTCAAT


Right flanking sequence: Indices 278360 -- 278859
TTCTTCCAGGCCTAGGTTTGCGGATGCTAAGCAGATCCCTACCTTGGAGGAAGCCTATTTTTGCT
TCAATCTTGAGGATGCCGTTTTGACTTCAATGGAAAGGTTAAAGCCGGCACTAAGGTCCAGAATG
AAAGAGAAGCAAGTCATGAGGTTGACCGAAACGGGTGATAGTTTCATACCCGTAATTACATAAAA
GAGAGAGAATCACAACGGCAATTGCTCTTCTTTCAAGTGAGTGACATAGGTTCGAGCAACCACTG
ACAAAAGCGCCCTTTTTTCTAAGGTAGATCTCCGGTCGCAAAGATCTTTATCTCACGCTTGCAGC
CCGCGGATGCCCTGTTGTTTTGCCTTGTGGTATAGGGCCTGTTCCGTGTGCTGTATTAAGAATTC
ACAACTTGAAGAGATCTTTCTTCTGCTCAATCATATGAGGGAGCGCCTTCCCTTCTTCCATGTCC
TGGATCTATATCGACGAAGGGCAACGAAGCTTCTGCTCCCGCTGG



Found at i:297199 original size:18 final size:18

Alignment explanation


    Indices: 297159--297201  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 18

     297149 AGAGCCCTGC

                               
     297159 CATAGTCGCGAGTCTGTTT
          1 CATAGTCGCGAG-CTGTTT

                               
     297178 -ATAGTCGCGA-CTGTTGT
          1 CATAGTCGCGAGCTGTT-T

                   
     297195 CATAGTC
          1 CATAGTC

     297202 AACAAGGTTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 5
        0.81            0.00        0.19

Matches are distributed among these distances:
  16    5  0.23
  17    1  0.05
  18   16  0.73

ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35


Consensus pattern (18 bp):   
CATAGTCGCGAGCTGTTT

Left flanking sequence: Indices 296659 -- 297158
CACCTAACAAAGAAGCATAGGTGTAGTTCCGTCAGGCTTCCCCTCGCTCTCCTTTCCCTAATATG
AACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCTACTGGCGCTTC
AAAAGGCGAAACTCTCAATTCTCGATAAAGGGTTTGCTTGTTATTTGAAAAGGCGGACACTTTTA
GTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCT
CCGGCTCCGCGCACCTGCCCTTTCGAAGCACTTTCTAGTGTGAACCACCAAGGAACGTCCCGCGT
TCCGGCTTGTTCGAATCGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTTAC
TATTCCCCCGTTCAAATTCCGTACCGTCACGTTCCGCCCTATCACGTAAGGGGGCCTTTAGTATT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCTTAGAGCCCTGC


Right flanking sequence: Indices 297202 -- 297701
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA



Found at i:310298 original size:39 final size:39

Alignment explanation


    Indices: 310244--310322  Score: 149
    Period size: 39  Copynumber: 2.0  Consensus size: 39

     310234 CGATTTTCTA

                                        *          
     310244 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
          1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT

                                                   
     310283 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
          1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT

             
     310322 T
          1 T

     310323 GAAGGATGGG


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32


Consensus pattern (39 bp):   
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT

Left flanking sequence: Indices 309744 -- 310243
ACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCCATTGGTCCTA
GTATCATAGGCGACCGAACGGCCGCCCCCCCCCTAATTACTAGACCGACCTGCTGTAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCGAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCCGCTGGAACTGCTATGTACGTTTTCGATTTTCTA


Right flanking sequence: Indices 310323 -- 310822
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGTGGAAGATGGTGCAACATCG
AATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGACTGAGCATAAGCGAAGTC
AAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGATTTGTGGT
TGAGTCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCTTCGCCTTTGACTATATAAGG
TCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGAAATCAAGTAGAACCTTAAG
TCCAAGTCAAATAAATAGGGCGAATTGAATATGAATTTGAATTGAAATTCATTTGAATTGAATTT
TAAAAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCT
AATTCAGAACTTGACTAAGCCTTTTTCCCTTAAATGACGAGGGTA



Found at i:327065 original size:5 final size:5

Alignment explanation


    Indices: 327055--327087  Score: 57
    Period size: 5  Copynumber: 6.6  Consensus size: 5

     327045 TCACCGCTGA

                            *                      
     327055 AAGAG AAGAG AAGAT AAGAG AAGAG AAGAG AAG
          1 AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAG

     327088 TGAGCGTTTA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   5   26  1.00

ACGTcount: A:0.61, C:0.00, G:0.36, T:0.03


Consensus pattern (5 bp):   
AAGAG

Left flanking sequence: Indices 326555 -- 327054
AAAGCTCTCTTTCTCATGCTAGTAGTAAAGTAAGGGAGGCTAGCTCTAAGTGGTCAGTAGTCCAG
TACCAAAGCAAGCTTAAAGGAAGCATGCAAGCACTTCAATAGTCTTCTCTTGATCCACTATGCAT
TAAGCAAGTTAATAAACAAAGCCCTCAGAATAAGGAATAAGGCAGGCTCGACAAAAGAGAGAAAG
GAAACAGAGCAAGAGAGTCCGTCCACTGGAAGAAAGAAGGAATAAGGCAAGCCAGCCAGGTAGAT
TAGTTGAGTAGGTATTCACTACCCCACCCAACCAAGCGAGCCATACCAGCAAGGAGGCACCAAGC
AAGCCACAGGACTGAGAGCCTTATAGTTCATGGGAGTACCAATTGACAGATTAGAGGTAGTTGCC
GCTAAATACAAACTGTAGATCGAATTAGAACTAACATTTTCAACATATGTAATTTCACATAAGAG
AGTTTTCTTTCCTCTTAAATTAAATTAAAGAAGGGTCACCGCTGA


Right flanking sequence: Indices 327088 -- 327587
TGAGCGTTTATGACCTATTTAGCTAGATTTCTCTCTAAACTGCATACCACCTTCCAGCAAAGAAA
ACCGCCGTGCTAACGGACAACAGCTTTTTGCGCTCTACCTTGATGTGAGCTTTTGAAGCATACCA
GCTTCTTTGGCCATCGGTTTTATTGTAGCTTCTTTGTAATTAAATCACATACATAGGCACGCACA
TCTTTTTTTCTTTTTGAGAGGTCTTGCTGACAGATTCATCTTCTGCGGTTCTCTGTCAGCTTCCA
CCAAGAAAACACCTGTGGTAACGCTATTAACGAATTGGGGCTGGTAGCGCTAGCGCGCTCATCCG
TTGCTTGTTCGCTCTACCGTTGTTTGTTGCGCTACGGCTTTCGCGCTAGGCGCTCATCCCTAGCT
TGTTCCCTAACGCTTACCTTTCTTTCATTTCTTTCTTAAAGTATAAAACGGATATTGATTCTCTT
CCCCATTCAGGAAGCTCAATTGAAGGATTTCCGTGCTTCAGTTTT



Found at i:371428 original size:17 final size:17

Alignment explanation


    Indices: 371406--371439  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     371396 GTAGAGCCGG

                             
     371406 TTCTGTCGCCTATGAGC
          1 TTCTGTCGCCTATGAGC

                  *          
     371423 TTCTGTGGCCTATGAGC
          1 TTCTGTCGCCTATGAGC

     371440 GTATCATAGC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.12, C:0.26, G:0.26, T:0.35


Consensus pattern (17 bp):   
TTCTGTCGCCTATGAGC

Left flanking sequence: Indices 370906 -- 371405
GGAAAAGACCTAGTTGAAAACAAGAAAAAAACCGGTGCCCCGATTAAGAGGACATTGAATCAACG
GTTAGCTAGGTCGTTAGAATCGTTACGGAGATTCACCCTACCCGCTTCCTCCGGTAGGGCCGTCT
TCCAGGGTTCATCCTATAGCTACTTAGGATCCGATCTATAGCGCGCCACCCAATTACGGCTACCA
GCAGCGGTCAAGCTAGCAGCAGATACTTTATGCATTCCGGGAGAAAGAAAGCAAGTGGTCGAAGA
TCTTATTTTTGTGCTGGAACTAGTTGTGCTCCACCTATTACTATAAGACCGCCAAAGGACGGGGA
TGAAAATGACAAGAATAGTGGCTTGGGACCCCGAGTGACCCAGCTACATCAACGGTTCGAAATCA
GTTACTTGTAACAAATCCAGATACAACACAGAAGTAGATCCTTTAGATTCTATTGATCCCGGTGA
TCCAGTCCCATTTGATTTTCGGAGTAGACCTTGCTGTAGAGCCGG


Right flanking sequence: Indices 371440 -- 371939
GTATCATAGCAATAGTATATTCGCTTCTGTGGCGTATGAGCTTCTGTCGCCTATGAGCTTCTGTT
GCCTATGAGCTTCTTTGGTGTATGTTCTTTCTCTCTTTTTTTGTTTTTTCAGCTTCCGGTTGTAG
CTGCTTTTCTTTTCAGCATAGAAGCTTCTGTTGCTCCTTAGCCGTATTCGCTTCAGCAAGAAAAC
GCAATTATTTAGTAAAGGGCGTGAAGCAAGAAAACGTATGCAGCAAGAAAACGTATGCGCGTGAG
CAAGAAAACGTATGCGCTAACGCTATTAACACGAACTGGGGCTTTCGCGGTAGTACAGTACGCTC
ACCCGTTGCTTGTTGCTATACGGCTTTCGCGCTAGGCAGCAAGAAAACGCAATTCGTCTTAAACG
CGTTACTAACGCACTTAGGCTTTCGCGCTAGCGCGCTCTACCGTTGCTTGTTCCGTTGCTTGTTG
CTATACGGCTTTCGCGCGTTAGCGCTCACCCGTTGCTTGTTGCAC



Found at i:371528 original size:17 final size:17

Alignment explanation


    Indices: 371462--371518  Score: 87
    Period size: 17  Copynumber: 3.4  Consensus size: 17

     371452 TAGTATATTC

                       *     
     371462 GCTTCTGTGGCGTATGA
          1 GCTTCTGTGGCCTATGA

                    *        
     371479 GCTTCTGTCGCCTATGA
          1 GCTTCTGTGGCCTATGA

                    *        
     371496 GCTTCTGTTGCCTATGA
          1 GCTTCTGTGGCCTATGA

                  
     371513 GCTTCT
          1 GCTTCT

     371519 TTGGTGTATG


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  17   37  1.00

ACGTcount: A:0.11, C:0.25, G:0.26, T:0.39


Consensus pattern (17 bp):   
GCTTCTGTGGCCTATGA

Left flanking sequence: Indices 370962 -- 371461
GAATCAACGGTTAGCTAGGTCGTTAGAATCGTTACGGAGATTCACCCTACCCGCTTCCTCCGGTA
GGGCCGTCTTCCAGGGTTCATCCTATAGCTACTTAGGATCCGATCTATAGCGCGCCACCCAATTA
CGGCTACCAGCAGCGGTCAAGCTAGCAGCAGATACTTTATGCATTCCGGGAGAAAGAAAGCAAGT
GGTCGAAGATCTTATTTTTGTGCTGGAACTAGTTGTGCTCCACCTATTACTATAAGACCGCCAAA
GGACGGGGATGAAAATGACAAGAATAGTGGCTTGGGACCCCGAGTGACCCAGCTACATCAACGGT
TCGAAATCAGTTACTTGTAACAAATCCAGATACAACACAGAAGTAGATCCTTTAGATTCTATTGA
TCCCGGTGATCCAGTCCCATTTGATTTTCGGAGTAGACCTTGCTGTAGAGCCGGTTCTGTCGCCT
ATGAGCTTCTGTGGCCTATGAGCGTATCATAGCAATAGTATATTC


Right flanking sequence: Indices 371519 -- 372018
TTGGTGTATGTTCTTTCTCTCTTTTTTTGTTTTTTCAGCTTCCGGTTGTAGCTGCTTTTCTTTTC
AGCATAGAAGCTTCTGTTGCTCCTTAGCCGTATTCGCTTCAGCAAGAAAACGCAATTATTTAGTA
AAGGGCGTGAAGCAAGAAAACGTATGCAGCAAGAAAACGTATGCGCGTGAGCAAGAAAACGTATG
CGCTAACGCTATTAACACGAACTGGGGCTTTCGCGGTAGTACAGTACGCTCACCCGTTGCTTGTT
GCTATACGGCTTTCGCGCTAGGCAGCAAGAAAACGCAATTCGTCTTAAACGCGTTACTAACGCAC
TTAGGCTTTCGCGCTAGCGCGCTCTACCGTTGCTTGTTCCGTTGCTTGTTGCTATACGGCTTTCG
CGCGTTAGCGCTCACCCGTTGCTTGTTGCACAACGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCT
TGTTGTATTAGCTTTCTATCTTTTCAGCATAGAAGCTTCTGTTGC



Found at i:371681 original size:17 final size:17

Alignment explanation


    Indices: 371659--371692  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     371649 AAGGGCGTGA

                             
     371659 AGCAAGAAAACGTATGC
          1 AGCAAGAAAACGTATGC

                             
     371676 AGCAAGAAAACGTATGC
          1 AGCAAGAAAACGTATGC

     371693 GCGTGAGCAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12


Consensus pattern (17 bp):   
AGCAAGAAAACGTATGC

Left flanking sequence: Indices 371159 -- 371658
TCGAAGATCTTATTTTTGTGCTGGAACTAGTTGTGCTCCACCTATTACTATAAGACCGCCAAAGG
ACGGGGATGAAAATGACAAGAATAGTGGCTTGGGACCCCGAGTGACCCAGCTACATCAACGGTTC
GAAATCAGTTACTTGTAACAAATCCAGATACAACACAGAAGTAGATCCTTTAGATTCTATTGATC
CCGGTGATCCAGTCCCATTTGATTTTCGGAGTAGACCTTGCTGTAGAGCCGGTTCTGTCGCCTAT
GAGCTTCTGTGGCCTATGAGCGTATCATAGCAATAGTATATTCGCTTCTGTGGCGTATGAGCTTC
TGTCGCCTATGAGCTTCTGTTGCCTATGAGCTTCTTTGGTGTATGTTCTTTCTCTCTTTTTTTGT
TTTTTCAGCTTCCGGTTGTAGCTGCTTTTCTTTTCAGCATAGAAGCTTCTGTTGCTCCTTAGCCG
TATTCGCTTCAGCAAGAAAACGCAATTATTTAGTAAAGGGCGTGA


Right flanking sequence: Indices 371693 -- 372192
GCGTGAGCAAGAAAACGTATGCGCTAACGCTATTAACACGAACTGGGGCTTTCGCGGTAGTACAG
TACGCTCACCCGTTGCTTGTTGCTATACGGCTTTCGCGCTAGGCAGCAAGAAAACGCAATTCGTC
TTAAACGCGTTACTAACGCACTTAGGCTTTCGCGCTAGCGCGCTCTACCGTTGCTTGTTCCGTTG
CTTGTTGCTATACGGCTTTCGCGCGTTAGCGCTCACCCGTTGCTTGTTGCACAACGGCTTTCGCG
CTAGCGCGCTCAGGAGTTGCTTGTTGTATTAGCTTTCTATCTTTTCAGCATAGAAGCTTCTGTTG
CGTATTAGCTTCTGTTGCGTATTAGCTTCAGCAAGAAAACGCAATTCGTCTTAAACGCGTTACTA
ACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTCTACCGTTGTTTGTTGCGTATTAGCTTTC
GAAAGCTGATCTTAAGTGAGGTCGACTCTCAACTATCATTGCCAC



Found at i:371704 original size:22 final size:22

Alignment explanation


    Indices: 371653--371716  Score: 84
    Period size: 22  Copynumber: 3.1  Consensus size: 22

     371643 TTAGTAAAGG

                                   
     371653 GCGTGAAGCAAGAAAACGTAT--
          1 GCGTG-AGCAAGAAAACGTATGC

                                  
     371674 GC---AGCAAGAAAACGTATGC
          1 GCGTGAGCAAGAAAACGTATGC

                                  
     371693 GCGTGAGCAAGAAAACGTATGC
          1 GCGTGAGCAAGAAAACGTATGC

              
     371715 GC
          1 GC

     371717 TAACGCTATT


Statistics
Matches: 38,  Mismatches: 0, Indels: 9
        0.81            0.00        0.19

Matches are distributed among these distances:
  17   15  0.39
  19    2  0.05
  21    2  0.05
  22   19  0.50

ACGTcount: A:0.39, C:0.19, G:0.30, T:0.12


Consensus pattern (22 bp):   
GCGTGAGCAAGAAAACGTATGC

Left flanking sequence: Indices 371153 -- 371652
AAGTGGTCGAAGATCTTATTTTTGTGCTGGAACTAGTTGTGCTCCACCTATTACTATAAGACCGC
CAAAGGACGGGGATGAAAATGACAAGAATAGTGGCTTGGGACCCCGAGTGACCCAGCTACATCAA
CGGTTCGAAATCAGTTACTTGTAACAAATCCAGATACAACACAGAAGTAGATCCTTTAGATTCTA
TTGATCCCGGTGATCCAGTCCCATTTGATTTTCGGAGTAGACCTTGCTGTAGAGCCGGTTCTGTC
GCCTATGAGCTTCTGTGGCCTATGAGCGTATCATAGCAATAGTATATTCGCTTCTGTGGCGTATG
AGCTTCTGTCGCCTATGAGCTTCTGTTGCCTATGAGCTTCTTTGGTGTATGTTCTTTCTCTCTTT
TTTTGTTTTTTCAGCTTCCGGTTGTAGCTGCTTTTCTTTTCAGCATAGAAGCTTCTGTTGCTCCT
TAGCCGTATTCGCTTCAGCAAGAAAACGCAATTATTTAGTAAAGG


Right flanking sequence: Indices 371717 -- 372216
TAACGCTATTAACACGAACTGGGGCTTTCGCGGTAGTACAGTACGCTCACCCGTTGCTTGTTGCT
ATACGGCTTTCGCGCTAGGCAGCAAGAAAACGCAATTCGTCTTAAACGCGTTACTAACGCACTTA
GGCTTTCGCGCTAGCGCGCTCTACCGTTGCTTGTTCCGTTGCTTGTTGCTATACGGCTTTCGCGC
GTTAGCGCTCACCCGTTGCTTGTTGCACAACGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCTTGT
TGTATTAGCTTTCTATCTTTTCAGCATAGAAGCTTCTGTTGCGTATTAGCTTCTGTTGCGTATTA
GCTTCAGCAAGAAAACGCAATTCGTCTTAAACGCGTTACTAACGCACCTTACGTTTATTGAATGG
GGCTTTCGCGCTCTACCGTTGTTTGTTGCGTATTAGCTTTCGAAAGCTGATCTTAAGTGAGGTCG
ACTCTCAACTATCATTGCCACGATTTGTTTTTTAGCGTATATAAG



Found at i:371964 original size:42 final size:41

Alignment explanation


    Indices: 371882--371959  Score: 115
    Period size: 42  Copynumber: 1.9  Consensus size: 41

     371872 GTTGCTTGTT

                            *                         
     371882 CCGTTGCTTGTTGCTATACGGCTTTCGCGCGTTAGCGCTCAC
          1 CCGTTGCTTGTTGCTAAACGGCTTTCGCGCG-TAGCGCTCAC

                                                  
     371924 CCGTTGCTTGTTGC-ACAACGGCTTTCGCGC-TAGCGC
          1 CCGTTGCTTGTTGCTA-AACGGCTTTCGCGCGTAGCGC

     371960 GCTCAGGAGT


Statistics
Matches: 34,  Mismatches: 1, Indels: 4
        0.87            0.03        0.10

Matches are distributed among these distances:
  40    6  0.18
  41    1  0.03
  42   27  0.79

ACGTcount: A:0.10, C:0.32, G:0.27, T:0.31


Consensus pattern (41 bp):   
CCGTTGCTTGTTGCTAAACGGCTTTCGCGCGTAGCGCTCAC

Left flanking sequence: Indices 371382 -- 371881
GAGTAGACCTTGCTGTAGAGCCGGTTCTGTCGCCTATGAGCTTCTGTGGCCTATGAGCGTATCAT
AGCAATAGTATATTCGCTTCTGTGGCGTATGAGCTTCTGTCGCCTATGAGCTTCTGTTGCCTATG
AGCTTCTTTGGTGTATGTTCTTTCTCTCTTTTTTTGTTTTTTCAGCTTCCGGTTGTAGCTGCTTT
TCTTTTCAGCATAGAAGCTTCTGTTGCTCCTTAGCCGTATTCGCTTCAGCAAGAAAACGCAATTA
TTTAGTAAAGGGCGTGAAGCAAGAAAACGTATGCAGCAAGAAAACGTATGCGCGTGAGCAAGAAA
ACGTATGCGCTAACGCTATTAACACGAACTGGGGCTTTCGCGGTAGTACAGTACGCTCACCCGTT
GCTTGTTGCTATACGGCTTTCGCGCTAGGCAGCAAGAAAACGCAATTCGTCTTAAACGCGTTACT
AACGCACTTAGGCTTTCGCGCTAGCGCGCTCTACCGTTGCTTGTT


Right flanking sequence: Indices 371960 -- 372459
GCTCAGGAGTTGCTTGTTGTATTAGCTTTCTATCTTTTCAGCATAGAAGCTTCTGTTGCGTATTA
GCTTCTGTTGCGTATTAGCTTCAGCAAGAAAACGCAATTCGTCTTAAACGCGTTACTAACGCACC
TTACGTTTATTGAATGGGGCTTTCGCGCTCTACCGTTGTTTGTTGCGTATTAGCTTTCGAAAGCT
GATCTTAAGTGAGGTCGACTCTCAACTATCATTGCCACGATTTGTTTTTTAGCGTATATAAGAAG
CTTCAATTCATCGAATCGCCTCATGTACGGAATAGGCATCAAGAAGCTAGGGTCCAGTAGTGCCT
CGCAATCATGGTCAGGTACCTTGTGTACGATCTGCGTAGGCCGGTCAACCACTGGTGTAAGATCC
ATTCCAAGCTTGAGGTTGTTTATGCTTGAAGTGAAGTCTAAGTTTTGCTTCTCTCATCGAGATTG
GGTTGGTTTTCAGTTTAACGTACTGTATAAAAAAACAAAGAGAGA



Found at i:371972 original size:42 final size:41

Alignment explanation


    Indices: 371884--371978  Score: 104
    Period size: 42  Copynumber: 2.3  Consensus size: 41

     371874 TGCTTGTTCC

                          *                          *
     371884 GTTGCTTGTTGCTATACGGCTTTCGCGCGTTAGCGCTCACCC
          1 GTTGCTTGTTGCTAAACGGCTTTCGCGCG-TAGCGCTCACCA

                                                     ** 
     371926 GTTGCTTGTTGC-ACAACGGCTTTCGCGC-TAGCGCGCTCAGGA
          1 GTTGCTTGTTGCTA-AACGGCTTTCGCGCGTA--GCGCTCACCA

                       
     371968 GTTGCTTGTTG
          1 GTTGCTTGTTG

     371979 TATTAGCTTT


Statistics
Matches: 46,  Mismatches: 4, Indels: 6
        0.82            0.07        0.11

Matches are distributed among these distances:
  40    2  0.04
  41    1  0.02
  42   43  0.93

ACGTcount: A:0.11, C:0.27, G:0.29, T:0.33


Consensus pattern (41 bp):   
GTTGCTTGTTGCTAAACGGCTTTCGCGCGTAGCGCTCACCA

Left flanking sequence: Indices 371384 -- 371883
GTAGACCTTGCTGTAGAGCCGGTTCTGTCGCCTATGAGCTTCTGTGGCCTATGAGCGTATCATAG
CAATAGTATATTCGCTTCTGTGGCGTATGAGCTTCTGTCGCCTATGAGCTTCTGTTGCCTATGAG
CTTCTTTGGTGTATGTTCTTTCTCTCTTTTTTTGTTTTTTCAGCTTCCGGTTGTAGCTGCTTTTC
TTTTCAGCATAGAAGCTTCTGTTGCTCCTTAGCCGTATTCGCTTCAGCAAGAAAACGCAATTATT
TAGTAAAGGGCGTGAAGCAAGAAAACGTATGCAGCAAGAAAACGTATGCGCGTGAGCAAGAAAAC
GTATGCGCTAACGCTATTAACACGAACTGGGGCTTTCGCGGTAGTACAGTACGCTCACCCGTTGC
TTGTTGCTATACGGCTTTCGCGCTAGGCAGCAAGAAAACGCAATTCGTCTTAAACGCGTTACTAA
CGCACTTAGGCTTTCGCGCTAGCGCGCTCTACCGTTGCTTGTTCC


Right flanking sequence: Indices 371979 -- 372478
TATTAGCTTTCTATCTTTTCAGCATAGAAGCTTCTGTTGCGTATTAGCTTCTGTTGCGTATTAGC
TTCAGCAAGAAAACGCAATTCGTCTTAAACGCGTTACTAACGCACCTTACGTTTATTGAATGGGG
CTTTCGCGCTCTACCGTTGTTTGTTGCGTATTAGCTTTCGAAAGCTGATCTTAAGTGAGGTCGAC
TCTCAACTATCATTGCCACGATTTGTTTTTTAGCGTATATAAGAAGCTTCAATTCATCGAATCGC
CTCATGTACGGAATAGGCATCAAGAAGCTAGGGTCCAGTAGTGCCTCGCAATCATGGTCAGGTAC
CTTGTGTACGATCTGCGTAGGCCGGTCAACCACTGGTGTAAGATCCATTCCAAGCTTGAGGTTGT
TTATGCTTGAAGTGAAGTCTAAGTTTTGCTTCTCTCATCGAGATTGGGTTGGTTTTCAGTTTAAC
GTACTGTATAAAAAAACAAAGAGAGAATTCATTTATCTCTTATGA



Found at i:372029 original size:17 final size:17

Alignment explanation


    Indices: 372007--372046  Score: 80
    Period size: 17  Copynumber: 2.4  Consensus size: 17

     371997 TCAGCATAGA

                             
     372007 AGCTTCTGTTGCGTATT
          1 AGCTTCTGTTGCGTATT

                             
     372024 AGCTTCTGTTGCGTATT
          1 AGCTTCTGTTGCGTATT

                  
     372041 AGCTTC
          1 AGCTTC

     372047 AGCAAGAAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   23  1.00

ACGTcount: A:0.12, C:0.20, G:0.23, T:0.45


Consensus pattern (17 bp):   
AGCTTCTGTTGCGTATT

Left flanking sequence: Indices 371507 -- 372006
CTATGAGCTTCTTTGGTGTATGTTCTTTCTCTCTTTTTTTGTTTTTTCAGCTTCCGGTTGTAGCT
GCTTTTCTTTTCAGCATAGAAGCTTCTGTTGCTCCTTAGCCGTATTCGCTTCAGCAAGAAAACGC
AATTATTTAGTAAAGGGCGTGAAGCAAGAAAACGTATGCAGCAAGAAAACGTATGCGCGTGAGCA
AGAAAACGTATGCGCTAACGCTATTAACACGAACTGGGGCTTTCGCGGTAGTACAGTACGCTCAC
CCGTTGCTTGTTGCTATACGGCTTTCGCGCTAGGCAGCAAGAAAACGCAATTCGTCTTAAACGCG
TTACTAACGCACTTAGGCTTTCGCGCTAGCGCGCTCTACCGTTGCTTGTTCCGTTGCTTGTTGCT
ATACGGCTTTCGCGCGTTAGCGCTCACCCGTTGCTTGTTGCACAACGGCTTTCGCGCTAGCGCGC
TCAGGAGTTGCTTGTTGTATTAGCTTTCTATCTTTTCAGCATAGA


Right flanking sequence: Indices 372047 -- 372546
AGCAAGAAAACGCAATTCGTCTTAAACGCGTTACTAACGCACCTTACGTTTATTGAATGGGGCTT
TCGCGCTCTACCGTTGTTTGTTGCGTATTAGCTTTCGAAAGCTGATCTTAAGTGAGGTCGACTCT
CAACTATCATTGCCACGATTTGTTTTTTAGCGTATATAAGAAGCTTCAATTCATCGAATCGCCTC
ATGTACGGAATAGGCATCAAGAAGCTAGGGTCCAGTAGTGCCTCGCAATCATGGTCAGGTACCTT
GTGTACGATCTGCGTAGGCCGGTCAACCACTGGTGTAAGATCCATTCCAAGCTTGAGGTTGTTTA
TGCTTGAAGTGAAGTCTAAGTTTTGCTTCTCTCATCGAGATTGGGTTGGTTTTCAGTTTAACGTA
CTGTATAAAAAAACAAAGAGAGAATTCATTTATCTCTTATGATTTAGAAGTTTGGAAGATATATC
GAGAAAAGGTTTTAGTACCGGTGTATCCTATATGTACTCCACTTT



Found at i:374287 original size:18 final size:18

Alignment explanation


    Indices: 374253--374288  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

     374243 TTTGTTTGGC

                     *  *     
     374253 CACTATACTTTTTATATA
          1 CACTATACTATTGATATA

                              
     374271 CACTATACTATTGATATA
          1 CACTATACTATTGATATA

     374289 TAAATTATAT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.36, C:0.17, G:0.03, T:0.44


Consensus pattern (18 bp):   
CACTATACTATTGATATA

Left flanking sequence: Indices 373753 -- 374252
TTTTATCATTCAATCTCTTTTTTTTATCATGCGTTTGTCTTTGTTTTCCTTTTTTCTCTGTGCTT
CTAATGAATTCCATTCTAATTTCTCATGTTTCGGGTGGGCAAGTCTTAAGAAAGGAATAGCAGAA
AAGGGAAGTTTCGAATTTCTATCAAAGTCAAAGTCAAGATTCATCGACTAAAGACTCAAAGAAAG
AACAAAGAAAAACAAATCATGTTAGAAGGAGCCAAATTAATCGGTGCTGGAGCTGCTACAATTGC
TTTCGCGGTGCGCCTTGCTCGCAGAGCAGTTGTTATTCTTCAACTAATGTTTTCTAATCTGGTCC
GATGGCTGTTCTCCACTAACCACAAGGATATAGGCACTTTATATTGGAGCCGTTTCGGTGCTATT
GCTGGAGTGATAGGCACAATTTTCTCCGTACTGATTCGTCGTATGGAATACGCACGACCCGGCGA
TCAAATTCTTGGCGGGAATCATCAACTACTGTTCATTTGTTTGGC


Right flanking sequence: Indices 374289 -- 374788
TAAATTATATAGAAAACACCGGGTTTGTCGGTTTATATATATTTTAATAGTTTTAATCATCCAAG
TTCTGCTCATTCTGGTCAGAATGACTTTCTTGGATTTGATAGTCAGTCAAGTCTTATTAGCAATA
ATGGGTGTATCTCTTGGGGGCGGCCTACTCACTGTTCCGACAAGCGGCTGCGCGGTACTGGATCT
TAATTTACCGCCACAACCAGAACCCGAAATAGATCTGAACTTGAGGCCAGAGCCAGAGCAACCCC
CTTGTGTCTATTCCGCGGAACCAGAGATTCATCCAAACCTCGAGGGCTTGGACACAATACAGAAT
AAAGCCCTCAGAGATCGAATTATCGCGGGGCATTTAGAATTTAATCAAAAAGAAAAGCAAAGCGC
CGAAGTGGTGCTTGCTGAGTGGGAAGAATATGGTGAAAGAGTGAAAGAAAAAGACCTCCTAATGC
AAGAGAAAAACGCCGCTAAGAAGGCAGAGTGTGAAGATATTGACA



Found at i:410844 original size:17 final size:17

Alignment explanation


    Indices: 410822--410861  Score: 80
    Period size: 17  Copynumber: 2.4  Consensus size: 17

     410812 TTTTCTTGCT

                             
     410822 GAAGCTAATACGCAACA
          1 GAAGCTAATACGCAACA

                             
     410839 GAAGCTAATACGCAACA
          1 GAAGCTAATACGCAACA

                  
     410856 GAAGCT
          1 GAAGCT

     410862 TCTATGCTGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   23  1.00

ACGTcount: A:0.45, C:0.23, G:0.20, T:0.12


Consensus pattern (17 bp):   
GAAGCTAATACGCAACA

Left flanking sequence: Indices 410322 -- 410821
AAAGTGGAGTACATATAGGATACACCGGTACTAAAACCTTTTCTCGATATATCTTCCAAACTTCT
AAATCATAAGAGATAAATGAATTCTCTCTTTGTTTTTTTATACAGTACGTTAAACTGAAAACCAA
CCCAATCTCGATGAGAGAAGCAAAACTTAGACTTCACTTCAAGCATAAACAACCTCAAGCTTGGA
ATGGATCTTACACCAGTGGTTGACCGGCCTACGCAGATCGTACACAAGGTACCTGACCATGATTG
CGAGGCACTACTGGACCCTAGCTTCTTGATGCCTATTCCGTACATGAGGCGATTCGATGAATTGA
AGCTTCTTATATACGCTAAAAAACAAATCGTGGCAATGATAGTTGAGAGTCGACCTCACTTAAGA
TCAGCTTTCGAAAGCTAATACGCAACAAACAACGGTAGAGCGCGAAAGCCCCATTCAATAAACGT
AAGGTGCGTTAGTAACGCGTTTAAGACGAATTGCGTTTTCTTGCT


Right flanking sequence: Indices 410862 -- 411361
TCTATGCTGAAAAGATAGAAAGCTAATACAACAAGCAACTCCTGAGCGCGCTAGCGCGAAAGCCG
TTGTGCAACAAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAGCAACAAGCAACGGAACAA
GCAACGGTAGAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTAAGACGAATTGCG
TTTTCTTGCTGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGTACTGTACTACCG
CGAAAGCCCCAGTTCGTGTTAATAGCGTTAGCGCATACGTTTTCTTGCTCACGCGCATACGTTTT
CTTGCTGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTCTTGCTGAAGCGA
ATACGGCTAAGGAGCAACAGAAGCTTCTATGCTGAAAAGAAAAGCAGCTACAACCGGAAGCTGAA
AAAACAAAAAAAGAGAGAAAGAACATACACCAAAGAAGCTCATAG



Found at i:410937 original size:42 final size:42

Alignment explanation


    Indices: 410890--410985  Score: 108
    Period size: 42  Copynumber: 2.3  Consensus size: 42

     410880 AAAGCTAATA

                       *                               * 
     410890 CAACAAGCAACTCCTGAGCGCGCT-A-GCGCGAAAGCCGT-TGTG
          1 CAACAAGCAACGCCTGA--GCGCTAACGCGCGAAAGCCGTAT-AG

                        **                            
     410932 CAACAAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAG
          1 CAACAAGCAACGCCTGAGCGCTAACGCGCGAAAGCCGTATAG

                        
     410974 CAACAAGCAACG
          1 CAACAAGCAACG

     410986 GAACAAGCAA


Statistics
Matches: 47,  Mismatches: 4, Indels: 6
        0.82            0.07        0.11

Matches are distributed among these distances:
  40    5  0.11
  41    1  0.02
  42   40  0.85
  43    1  0.02

ACGTcount: A:0.32, C:0.29, G:0.28, T:0.10


Consensus pattern (42 bp):   
CAACAAGCAACGCCTGAGCGCTAACGCGCGAAAGCCGTATAG

Left flanking sequence: Indices 410390 -- 410889
TCATAAGAGATAAATGAATTCTCTCTTTGTTTTTTTATACAGTACGTTAAACTGAAAACCAACCC
AATCTCGATGAGAGAAGCAAAACTTAGACTTCACTTCAAGCATAAACAACCTCAAGCTTGGAATG
GATCTTACACCAGTGGTTGACCGGCCTACGCAGATCGTACACAAGGTACCTGACCATGATTGCGA
GGCACTACTGGACCCTAGCTTCTTGATGCCTATTCCGTACATGAGGCGATTCGATGAATTGAAGC
TTCTTATATACGCTAAAAAACAAATCGTGGCAATGATAGTTGAGAGTCGACCTCACTTAAGATCA
GCTTTCGAAAGCTAATACGCAACAAACAACGGTAGAGCGCGAAAGCCCCATTCAATAAACGTAAG
GTGCGTTAGTAACGCGTTTAAGACGAATTGCGTTTTCTTGCTGAAGCTAATACGCAACAGAAGCT
AATACGCAACAGAAGCTTCTATGCTGAAAAGATAGAAAGCTAATA


Right flanking sequence: Indices 410986 -- 411485
GAACAAGCAACGGTAGAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTAAGACGA
ATTGCGTTTTCTTGCTGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGTACTGTA
CTACCGCGAAAGCCCCAGTTCGTGTTAATAGCGTTAGCGCATACGTTTTCTTGCTCACGCGCATA
CGTTTTCTTGCTGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTCTTGCTG
AAGCGAATACGGCTAAGGAGCAACAGAAGCTTCTATGCTGAAAAGAAAAGCAGCTACAACCGGAA
GCTGAAAAAACAAAAAAAGAGAGAAAGAACATACACCAAAGAAGCTCATAGGCAACAGAAGCTCA
TAGGCGACAGAAGCTCATACGCCACAGAAGCGAATATACTATTGCTATGATACGCTCATAGGCCA
CAGAAGCTCATAGGCGACAGAACCGGCTCTACAGCAAGGTCTACT



Found at i:411180 original size:22 final size:22

Alignment explanation


    Indices: 411152--411215  Score: 84
    Period size: 22  Copynumber: 3.1  Consensus size: 22

     411142 AATAGCGTTA

                                  
     411152 GCGCATACGTTTTCTTGCTCAC
          1 GCGCATACGTTTTCTTGCTCAC

                                  
     411174 GCGCATACGTTTTCTTGCT---
          1 GCGCATACGTTTTCTTGCTCAC

                                   
     411193 --GCATACGTTTTCTTGCTTCAC
          1 GCGCATACGTTTTCTTGC-TCAC

              
     411214 GC
          1 GC

     411216 CCTTTACTAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 11
        0.77            0.00        0.23

Matches are distributed among these distances:
  17   16  0.44
  18    1  0.03
  22   19  0.53

ACGTcount: A:0.12, C:0.30, G:0.19, T:0.39


Consensus pattern (22 bp):   
GCGCATACGTTTTCTTGCTCAC

Left flanking sequence: Indices 410652 -- 411151
CTTATATACGCTAAAAAACAAATCGTGGCAATGATAGTTGAGAGTCGACCTCACTTAAGATCAGC
TTTCGAAAGCTAATACGCAACAAACAACGGTAGAGCGCGAAAGCCCCATTCAATAAACGTAAGGT
GCGTTAGTAACGCGTTTAAGACGAATTGCGTTTTCTTGCTGAAGCTAATACGCAACAGAAGCTAA
TACGCAACAGAAGCTTCTATGCTGAAAAGATAGAAAGCTAATACAACAAGCAACTCCTGAGCGCG
CTAGCGCGAAAGCCGTTGTGCAACAAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAGCAA
CAAGCAACGGAACAAGCAACGGTAGAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGT
TTAAGACGAATTGCGTTTTCTTGCTGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAG
CGTACTGTACTACCGCGAAAGCCCCAGTTCGTGTTAATAGCGTTA


Right flanking sequence: Indices 411216 -- 411715
CCTTTACTAAATAATTGCGTTTTCTTGCTGAAGCGAATACGGCTAAGGAGCAACAGAAGCTTCTA
TGCTGAAAAGAAAAGCAGCTACAACCGGAAGCTGAAAAAACAAAAAAAGAGAGAAAGAACATACA
CCAAAGAAGCTCATAGGCAACAGAAGCTCATAGGCGACAGAAGCTCATACGCCACAGAAGCGAAT
ATACTATTGCTATGATACGCTCATAGGCCACAGAAGCTCATAGGCGACAGAACCGGCTCTACAGC
AAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATCTAAAGGATCTACT
TCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGTAGCTGGGTCACTC
GGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCTTATAGTAATAGGT
GGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGACCACTT



Found at i:411198 original size:17 final size:17

Alignment explanation


    Indices: 411176--411209  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     411166 TTGCTCACGC

                             
     411176 GCATACGTTTTCTTGCT
          1 GCATACGTTTTCTTGCT

                             
     411193 GCATACGTTTTCTTGCT
          1 GCATACGTTTTCTTGCT

     411210 TCACGCCCTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.12, C:0.24, G:0.18, T:0.47


Consensus pattern (17 bp):   
GCATACGTTTTCTTGCT

Left flanking sequence: Indices 410676 -- 411175
GTGGCAATGATAGTTGAGAGTCGACCTCACTTAAGATCAGCTTTCGAAAGCTAATACGCAACAAA
CAACGGTAGAGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGTAACGCGTTTAAGACGA
ATTGCGTTTTCTTGCTGAAGCTAATACGCAACAGAAGCTAATACGCAACAGAAGCTTCTATGCTG
AAAAGATAGAAAGCTAATACAACAAGCAACTCCTGAGCGCGCTAGCGCGAAAGCCGTTGTGCAAC
AAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAGCAACAAGCAACGGAACAAGCAACGGTA
GAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTAAGACGAATTGCGTTTTCTTGC
TGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGTACTGTACTACCGCGAAAGCCC
CAGTTCGTGTTAATAGCGTTAGCGCATACGTTTTCTTGCTCACGC


Right flanking sequence: Indices 411210 -- 411709
TCACGCCCTTTACTAAATAATTGCGTTTTCTTGCTGAAGCGAATACGGCTAAGGAGCAACAGAAG
CTTCTATGCTGAAAAGAAAAGCAGCTACAACCGGAAGCTGAAAAAACAAAAAAAGAGAGAAAGAA
CATACACCAAAGAAGCTCATAGGCAACAGAAGCTCATAGGCGACAGAAGCTCATACGCCACAGAA
GCGAATATACTATTGCTATGATACGCTCATAGGCCACAGAAGCTCATAGGCGACAGAACCGGCTC
TACAGCAAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATCTAAAGGA
TCTACTTCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGTAGCTGGG
TCACTCGGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCTTATAGTA
ATAGGTGGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGA



Found at i:411370 original size:17 final size:17

Alignment explanation


    Indices: 411350--411406  Score: 87
    Period size: 17  Copynumber: 3.4  Consensus size: 17

     411340 CATACACCAA

                             
     411350 AGAAGCTCATAGGCAAC
          1 AGAAGCTCATAGGCAAC

                          *  
     411367 AGAAGCTCATAGGCGAC
          1 AGAAGCTCATAGGCAAC

                       *  *  
     411384 AGAAGCTCATACGCCAC
          1 AGAAGCTCATAGGCAAC

                  
     411401 AGAAGC
          1 AGAAGC

     411407 GAATATACTA


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  17   37  1.00

ACGTcount: A:0.39, C:0.26, G:0.25, T:0.11


Consensus pattern (17 bp):   
AGAAGCTCATAGGCAAC

Left flanking sequence: Indices 410850 -- 411349
GCAACAGAAGCTTCTATGCTGAAAAGATAGAAAGCTAATACAACAAGCAACTCCTGAGCGCGCTA
GCGCGAAAGCCGTTGTGCAACAAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAGCAACAA
GCAACGGAACAAGCAACGGTAGAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTA
AGACGAATTGCGTTTTCTTGCTGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGT
ACTGTACTACCGCGAAAGCCCCAGTTCGTGTTAATAGCGTTAGCGCATACGTTTTCTTGCTCACG
CGCATACGTTTTCTTGCTGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTC
TTGCTGAAGCGAATACGGCTAAGGAGCAACAGAAGCTTCTATGCTGAAAAGAAAAGCAGCTACAA
CCGGAAGCTGAAAAAACAAAAAAAGAGAGAAAGAACATACACCAA


Right flanking sequence: Indices 411407 -- 411906
GAATATACTATTGCTATGATACGCTCATAGGCCACAGAAGCTCATAGGCGACAGAACCGGCTCTA
CAGCAAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATCTAAAGGATC
TACTTCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGTAGCTGGGTC
ACTCGGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCTTATAGTAAT
AGGTGGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGACCACTTGCTTTCTTTCTCCCGG
AATGCATAAAGTATCTGCTGCTAGCTTGACCGCTGCTGGTAGCCGTAATTGGGTGGCGCGCTATA
GATCGGATCCTAAGTAGCTATAGGATGAACCCTGGAAGACGGCCCTACCGGAGGAAGCGGGTAGG
GTGAATCTCCGTAACGATTCTAACGACCTAGCTAACCGTTGATTC



Found at i:411451 original size:17 final size:17

Alignment explanation


    Indices: 411429--411462  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     411419 GCTATGATAC

                             
     411429 GCTCATAGGCCACAGAA
          1 GCTCATAGGCCACAGAA

                      *      
     411446 GCTCATAGGCGACAGAA
          1 GCTCATAGGCCACAGAA

     411463 CCGGCTCTAC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.35, C:0.26, G:0.26, T:0.12


Consensus pattern (17 bp):   
GCTCATAGGCCACAGAA

Left flanking sequence: Indices 410929 -- 411428
GTGCAACAAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAGCAACAAGCAACGGAACAAGC
AACGGTAGAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTAAGACGAATTGCGTT
TTCTTGCTGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGTACTGTACTACCGCG
AAAGCCCCAGTTCGTGTTAATAGCGTTAGCGCATACGTTTTCTTGCTCACGCGCATACGTTTTCT
TGCTGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTCTTGCTGAAGCGAAT
ACGGCTAAGGAGCAACAGAAGCTTCTATGCTGAAAAGAAAAGCAGCTACAACCGGAAGCTGAAAA
AACAAAAAAAGAGAGAAAGAACATACACCAAAGAAGCTCATAGGCAACAGAAGCTCATAGGCGAC
AGAAGCTCATACGCCACAGAAGCGAATATACTATTGCTATGATAC


Right flanking sequence: Indices 411463 -- 411962
CCGGCTCTACAGCAAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATC
TAAAGGATCTACTTCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGT
AGCTGGGTCACTCGGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCT
TATAGTAATAGGTGGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGACCACTTGCTTTCT
TTCTCCCGGAATGCATAAAGTATCTGCTGCTAGCTTGACCGCTGCTGGTAGCCGTAATTGGGTGG
CGCGCTATAGATCGGATCCTAAGTAGCTATAGGATGAACCCTGGAAGACGGCCCTACCGGAGGAA
GCGGGTAGGGTGAATCTCCGTAACGATTCTAACGACCTAGCTAACCGTTGATTCAATGTCCTCTT
AATCGGGGCACCGGTTTTTTTCTTGTTTTCAACTAGGTCTTTTCC



Found at i:416199 original size:8 final size:7

Alignment explanation


    Indices: 416161--416202  Score: 50
    Period size: 7  Copynumber: 6.0  Consensus size: 7

     416151 AATCTGTTAC

                   
     416161 AAAGAAG
          1 AAAGAAG

                   
     416168 AAAGAAG
          1 AAAGAAG

            **     
     416175 CTA-AAG
          1 AAAGAAG

                   
     416181 AAAGAAG
          1 AAAGAAG

                    
     416188 AAAGAGAG
          1 AAAGA-AG

                   
     416196 AAAGAAG
          1 AAAGAAG

     416203 TTCGTGAGTG


Statistics
Matches: 29,  Mismatches: 4, Indels: 4
        0.78            0.11        0.11

Matches are distributed among these distances:
   6    4  0.14
   7   18  0.62
   8    7  0.24

ACGTcount: A:0.67, C:0.02, G:0.29, T:0.02


Consensus pattern (7 bp):   
AAAGAAG

Left flanking sequence: Indices 415661 -- 416160
TTGAGCTCTCTCTAAGTACAGTAAGGGGACTCCCTTTAGTTTAGTGAATAAGAAGTGCCACCTCT
TTCGAGGAATGGGACAAATTGCTTATTAAGAAGAGTTGGAGCATATAAATCAATAGCATAGATTC
TTCCTCTCTCCCTTAGGCATTTAGCAGGGCTAAAGAGAGCGATCGGAGGGGAGTCCTAGCCATGA
TTTATCTACACAGGGGTGCTCATTCTATCTATAATCATCGCATGACAGCAAGCGTAGGTTTAGCT
TACGTATGAAAGGGGCTTGACGATCCGTAGTCCGACCCCGTTATCATGGTAGAGGAGGCCTAGCA
AACTACTGCTAAAGGCATATGAAATGAATAAGGGTGACATGCGCTGACCCCTAATCTCTATTGAG
GACCCGAGGCACCAACTTCTTCTTCCCTCTATGGATCAGAGAAGAAAGATTGAATTCAAATAGAA
TAGTAAGGATTCACCACGTGGTACTAATATTGGAAAATCTGTTAC


Right flanking sequence: Indices 416203 -- 416702
TTCGTGAGTGCTTGCCAGGGACTACCTCGGATTCAGTTTATTAGTGCTTGCCAGGGTATGCGCCA
TCCCGCGGTGTCTGGCCATAACTAGAAGTCCAAACAGCGATACCATTCAAACGCTAGGAACTATG
ACGATGCTTACAATAAGGTTTAGGGCTCTGTGCCCTTGGCGTGTACTTCAGCCTTCGCGAAGTCA
CTCTCCTTAATTGCCCTAGAAGACGTGGAATCAACATCTGCCAAGCACGCATCTGGCCGACCCGG
AATCGAGTGGAAAAGTGTGCATAGACGAGGCGGTCGGGGAACTATGCTTAAAGGCAAAGTCGACT
AACGAGTCTGATAAATCAAAATCTATGTTTCTCAATCCGTAATGAGGCCAATTCTTTGTGGTTCT
TCTGAGTACGCCTAGCGTTTTCTCTCCGAGAGATGCTGTTAGTACCCATAAAAGGACGGTCCGCT
GGAGGCTCTAGACGAGGAAGGCGAGAATGATTCCAAATAGAGGAT



Found at i:420109 original size:24 final size:24

Alignment explanation


    Indices: 420082--420129  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     420072 GCTACTTAGA

                                    
     420082 TAGACGAATTAGCTCCTAGACTGC
          1 TAGACGAATTAGCTCCTAGACTGC

                 ***                
     420106 TAGACTTCTTAGCTCCTAGACTGC
          1 TAGACGAATTAGCTCCTAGACTGC

     420130 CTTACTTGAC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29


Consensus pattern (24 bp):   
TAGACGAATTAGCTCCTAGACTGC

Left flanking sequence: Indices 419582 -- 420081
AGCTCGAGAGTCCCAGAAAATCATTCAGAGTGCACAAGCCCAAGGAGAAATCCCTTGTCTCCCAA
GCGTTTTATTATTAACAATCATCGTAAGGATAGACAGGACTTAAGTCCAGTATCCTTAGCGACGT
TAAGATTATGCTCTGGCTTCGTAAGCGCCTTAGTCTTTAAGGGGCTTCTTTTCAGAGCTCCTTCC
GGCGGGTATCGGACCTACGAGTAGATCCAGCGATAGCATCATATAGCCTACGTGTAGTTCCAAAA
GCAGCAACTTAAGTCTCTCTTTCAGTTCAGTCTTGTCTTCCTCTGTTCTACTCTTACCGGACAAC
TCATTCGCCGCCGCTCCCCCTCTCGCTTTTTGGGCGAGCCGGGGGATCGGCTACAAGAAGAACAA
GCCTACGGTTTCACTCTTCATTTCCTTTGTTCTACGCTCGGCCCTATCTAAAGACTATCGAACTT
GAGCAACTTACGTACCTAGATATCTTGACGGGTGAGCTACTTAGA


Right flanking sequence: Indices 420130 -- 420629
CTTACTTGACTGGCTTTACTTGATTCTCACAGGCCTGTTTAGTCAAATAGAAGAGAAGCCCCTAC
TGCTTCGTTGCCCCGCTCCTGAAGCCTATAACTCGTTCATTATTGATTCATTGAATTGGTCGCCA
TCTCCCCCTGTGCTTTAGGGAAGAGTCCGGTTTCTTGCTTTAGCCATGAACTGGGGGCGGTTGTT
TTTAGGGTTCCACTGAGTCACTAGATGGCCTGTCAGAGGCAGGGTTACTTTAGCGTGGTTTACTT
AGAGATTGACTTCAAGGCTCTCGTTTGAAAGGGTGGCGAGGTCAAAGGTCCACCTCCTACAGCAT
TAGGGGCTTACTTAGATCGGTCCTGGTAGAATGGCTGCAGTTCGAGTCGAGGTAGTGGGACCTTG
CCGCTCATTCGCCTTGTGTTCTTATGCTTGGATCACTCAATCAATCTAAAGCCATCGATGGAAGA
TTTCTTGCTTTAGTTCGATGGGAGGCATCCCAGGTCCCGACCTAG



Found at i:444469 original size:12 final size:12

Alignment explanation


    Indices: 444432--444473  Score: 50
    Period size: 12  Copynumber: 3.4  Consensus size: 12

     444422 AAGAATAAGA

                     *  
     444432 GTTGCTCTTCTT
          1 GTTGCTCTTGTT

                          
     444444 AGTTGC-CTTAGTT
          1 -GTTGCTCTT-GTT

                        
     444457 GTTGCTCTTGTT
          1 GTTGCTCTTGTT

                 
     444469 GTTGC
          1 GTTGC

     444474 AGTTTGGGAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  12   16  0.62
  13   10  0.38

ACGTcount: A:0.05, C:0.19, G:0.24, T:0.52


Consensus pattern (12 bp):   
GTTGCTCTTGTT

Left flanking sequence: Indices 443932 -- 444431
CAGGGAGGGGCTCTCTCTGAACAACCAACGAAGCAGAAGGCGGTGCGGGAAAATCCAAGCGACAG
AGCCGATTCTTAAGTACCTGACCAGTATGACCTGGTGGGTGCAGCTTGCTCTTGCGTCTATTACG
ATGCTTTAGGTCGCTTTCTTATCTAGAGCGGAACTAGCCTGAAGGAAGGGGCGCTCAACAAGCCA
TGGATAGCTAGCCTTAGCTCGCTTCTGTAACCATGCGGTGCGGGACGATGTGATGAACAATCGTT
CGAGAAGGGAAGGTCTTAGAAAGGGGCTTCGAAAACTTCTCTCTTTACCTACACCTTGAACAAAC
TATTATGCTGATATTGATCGAGTAAGGCTCCACCACCTAAGTGCAAGGAGTTAAGCCGATCGCTT
TATACAGAAGGAGGAGAACGTCCCTAGGGCGGATGGTGACACATGCCGTTGACCACCTCTACCTT
CTGTTATTCTATAATCAAATAGGCCAACGAATAGAAAGAATAAGA


Right flanking sequence: Indices 444474 -- 444973
AGTTTGGGAGGAGGGAAAAGCGAGTCTTAGAGATCAAGCCACTCGCACTTCGGATCACCGGACTA
TAGCTGAGGCCAACCATATGGAGGTAGGGCGCCGCTCACTACAGGGAAATAGGAAAACCCAGCCC
TGATTGAGGTACCGGCTGGAGGAAGTGAGTGTTCTATCGAGGGAAGAACCGTCGATCCAGGCTCT
TAGGCCCTTACGACGATCTACACCTGGCCCTTCTAGGCCTACTTACAACCTCTTGCTTGTCTTAG
GCTCACTTCTTCGCATTCCTACCCATAGAATGAGTTATAGGCTTCTGGAGCAGGGCAACGAAGGC
TGCTTCTCTTCCCCCTAAACAGGCATGTGAGAATCAAGTAAAGGCAGTCAAGTAATGCTGTCGGG
GAGCTAATTCCTCTATTTAAGTAGCTCACCCGTAGAGATATGAGACCCGTTTTCTAGCGATTATA
TTAGTGACTAAGGTAGTCGGCTCGCGAGTTCTCTTTCCTCCACGT



Found at i:447381 original size:15 final size:15

Alignment explanation


    Indices: 447361--447391  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

     447351 CAGCTACAAA

                     *     
     447361 GCCGAAGTCGAAGAC
          1 GCCGAAGTCCAAGAC

                           
     447376 GCCGAAGTCCAAGAC
          1 GCCGAAGTCCAAGAC

             
     447391 G
          1 G

     447392 AAGCTTGCTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.32, C:0.29, G:0.32, T:0.06


Consensus pattern (15 bp):   
GCCGAAGTCCAAGAC

Left flanking sequence: Indices 446861 -- 447360
TTTCGGATCCAGCAGAAGAAAGAGAAGAATGTGGTGGAAAGAGGTAGCTTGGTATTGATCCCATT
GGCTCGGCATCAGCATCAATGGCACCACTCGGGTCATATGTCCCAGGTAGAGGTGTAGGAGAAGG
AGTTGAATCGAGGTACTTACTTCCCTCTTCAGTGGATGGAGGAAGGAGAGATGGTTAGTTCGGGT
TACCGGTCAAAGGTTCAATCTCACACTTCGACTTATCGACTTATTTCAATCTCACATTTCGACTT
TAAGATAAGGTCATCCAAGCAAGCACTGATTCCGGGTTCGGTTAAATCAGCTGCAGGAAACCCCT
GACAGCAACTCATAGCTACATTAGCTCAAGCAAGAACAAGAAGCAGCCTTAGCTACAAAGACGAA
GTCAAGGACAAAGTCAAAGACACAGGCTGAAGTCGATCACCAAAGCCGGAGGCTGAGGTATATCC
TGCACTGAAGCGGAAGTCCCAACGGCCGAAGGAAGCAGCTACAAA


Right flanking sequence: Indices 447392 -- 447891
AAGCTTGCTTTGCTCAAGAAAAGAACAAGAAGCTCCACTCGTAGCTGCTAAGTAAAGAGACTCCT
GGCTTAGCCAGTCCCGTGCAAACCCCAACTCGAAGAGCAAACCGAAGGAACTAATGATATTCTTG
CCCCTATCTGAGAACATCTCGACATTGGCAGGCTTACTGAATTAAACCCTTTGCCAAGGCAACTC
CTTAAGCCAAGGACAAGGTCCGAGGGAAGCAAGCCGATTTCATTGTCATAGAAACTCCCCCTTTT
TATGTTCTTTTCGCTATAGACCAATACCTTATTTGAGTCTTATTCACTAAGCGAGTACTTAGACA
TGTACCTAAGAGGATGAGACGGCCTCAGGTCTTATTTCTTATATAAGCTAATCCATGCCCACAAA
TGAAGCAACTGTTCCCTTTGGGGAGTAAGGCTGACCCTTTTCTTTCAATCCTATTGGCCCATTTC
GAGAATAAGAGTAAGCACTCTCCTTGTCATAGTTCGTAATCGAGT



Found at i:452524 original size:19 final size:18

Alignment explanation


    Indices: 452484--452526  Score: 50
    Period size: 18  Copynumber: 2.3  Consensus size: 18

     452474 AATAGAAAAT

                        *    *
     452484 AGAAGAAAAGCGCTAGAT
          1 AGAAGAAAAGCGATAGAA

                   *           
     452502 AGAAGAATAGCGTATAGAA
          1 AGAAGAAAAGCG-ATAGAA

                  
     452521 AGAAGA
          1 AGAAGA

     452527 GAAGAAATAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  18   11  0.52
  19   10  0.48

ACGTcount: A:0.53, C:0.07, G:0.28, T:0.12


Consensus pattern (18 bp):   
AGAAGAAAAGCGATAGAA

Left flanking sequence: Indices 451984 -- 452483
CAACAGCCCTTGCAGGTGAAGAGAGAAAAGTATCTCCTCCTGCCTTAAGAGTGACGGTACGGGTG
GTACTTATTCGCAAGTACCACCGCTGCCCTCAGCTATGCTCCATCATGCTTTAGCAATACGTTTT
AAGATTCTCCGTTAGGATGTTCATTCATGTTGGTTGTTGAGAGTGACGGTACGAGGTCTCCTTCA
CGGTACGGAGACGCTCTGCCCTTAGCGATTATAGTCCCGATCGCCGCCCGGAGCTACAAGGGCCA
GTCGAAATCACTGCGGGGCAAGACACGGGATGAAGTATCATAGATTGTCAACGAAAGTGTGAGAA
GTATTGTCATAATAGAGCGAATCTTAATGATAAGAGTCGCTATGACTTGGCTCTCTTTATGCTCT
TATCGTTCTCTTAGCCTGATCCTTTAACTGGAATAATCTTAAAAACAAAGTTGAATAGAACCAGA
AAGGCAATGTTCAATCTTAACAAGATTCCCATATAAATAGAAAAT


Right flanking sequence: Indices 452527 -- 453026
GAAGAAATAAAAGAGTCGTCTCATTAGAAATGGGTAATTTGTTTGAGCTTTGACATAGCATTCCG
TTCGACAAAGCGGCAGGGCCAATGTGACTGCAATAGCGCCCACTGGCATTCGTGTCGGGTCGCAG
TCCGGTATCCTTTAGCAGCTGTAAGAAAAGAATTTCTATGTCTCTGTTCTCATATGGCTAGCTAG
TTAAAAGAATAGAAGTTACTCGCCTCCATGCGAGGAAGCAGCTGACTCCTTTTCAATAGAAAGGA
ATAGCCCCAGCTGGCTGGTCAATCTCAGAGATCTTATCGGCCGGCAAACCGGAGACGGACGACCA
CGGTCCCGACCTTACCAGCACCTGAGGTTTACTAATCAATGAACCCCCGAACCCTACTTTCTTTT
CTGACAAAGTCATCAACCAAGCCTAACCTAACCGGTAACGACATGTTGTTGATATTGATTGAGTT
GGCGCTGACTGAATCCATCCATAAACCTAGACCCCGGTAACCTTC



Found at i:465680 original size:13 final size:13

Alignment explanation


    Indices: 465662--465687  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

     465652 GGACGAGGAC

                         
     465662 TCATGTTTCTGAG
          1 TCATGTTTCTGAG

                         
     465675 TCATGTTTCTGAG
          1 TCATGTTTCTGAG

     465688 ATTGATTGTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46


Consensus pattern (13 bp):   
TCATGTTTCTGAG

Left flanking sequence: Indices 465162 -- 465661
GATTCCTATCCTTCCCGGCTGTTGGCCTGTTTATATAAATTAAGAATGAAGCCTATTGGACCGGC
CATTATATATATATTTATTATTTTTGCATGAAACCAAAACCCGGAGATTCACACTCCCACTCTTA
TGCATACGGGGTAGGCTACTTTCGCGCTTCGGAAGGAGGAAAACAGAAGTGGGAAAAACTATTTA
AGGTCCTTATTTCGTACGTCCACTCGTGGGCAGCAACAAGGAAGTTATATATTCCCACCTTCCCC
AACTAGGGCTTTGACCACCCTACTTTCTGAATCAGATGGGGCACAGCCCTATAGCTTTTCGGCGG
ACGAGTCGTCTTTGGAAGATATGTATGTCAGGAAAGCTGGTGTAGTGGTTTAGACAGCGGAACAA
AAGGTGTAGGGGCCCGGAAGGGAGAGAGATCGACTCGCAGAACCGTTTACGATTCCTAGCTCCCC
ATTACTCAATAGGGACTTGGACTCGGAAGAATAGAGGACGAGGAC


Right flanking sequence: Indices 465688 -- 466187
ATTGATTGTTAGGTATCGAAAGTCGCTTCTCCTGCTGCTTCTGAGCTGGCGGTAACAAAGAAAAG
GAAATAAAATCAAACAGAACATGGGAGGAGGCGGGGAGAAAGCAATAGCGGTGATTGATGATAGA
AAGTGACTTTGTAACCTACCTTGACTCCACCTTCGTGGAACGGGAGTGGCCCTAGCGGGAAGGGA
TGAACGAGCTCGCTCCAGGAGTGGGGAACTTTATGAACTATATTTAGATCTTCCTTCCGACTGAC
CGGCTATCTTATCATTTCTTTTAGAGTCATTTAGATTGATTCTTGTTAGAGTGACTTTATCTACC
TACGGAAAAGAAAGAAGGCTACTGCTCTACTGCCTGACTTGACTGACTGGACTGCTCTTTAAGGG
AAGGGCCGAAGGAAAGGAAGCTGACTAACCGTTTACTCTAAATATACTTACTCGAAGCAGATTGG
CTTCTGAGTGAAGTGAGTGAAGAAGGATCTCTTTGGGTCTGGCTA



Found at i:466929 original size:13 final size:13

Alignment explanation


    Indices: 466911--466935  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

     466901 CTTAACTTAT

                         
     466911 TTTTTTTTATTTA
          1 TTTTTTTTATTTA

                        
     466924 TTTTTTTTATTT
          1 TTTTTTTTATTT

     466936 CTATTCTATT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88


Consensus pattern (13 bp):   
TTTTTTTTATTTA

Left flanking sequence: Indices 466411 -- 466910
TAAGTTGATCATTGCTCGGTATTGAGTGATTGAGGAAGGCTCGGGTGAGGCTTCCCTCTTGAACG
GTGTCCTGTATTTATTTGTTGTTACCGCTCCGACTTGCTTCCCTCTTGCTTTATAGATCCAATCT
CGCCCTTCTTTCCTGAAGCTTTTCATGGACCCTTTCTACTCTACCGCAATCGAAGTCTTGCATTG
AGTACTAATGTGGAGGGGCCCAAGCCAGCCAATCCCCCTGACGCCCACTAAGATCCACCCATGAT
TCATCGAACCATTCCTTCGCGGCCGCCATGCATGTGAATATTCATTTATTCTCAAAGGAGAAGAT
TCTTCTTTTTACCAAACATATGCGGATCCAACCACGATCTTAATCTTATAATCTTCTAATAAGAA
CAAGAGATCTTCCTCAATCAATCCCCTTGCCCTTCATTCTTCGAGAATCAGAAAAATCCTTTTCG
AGTTTTCATTTTTTTGAATCTTTTCTTCTACTTTACTTAACTTAT


Right flanking sequence: Indices 466936 -- 467435
CTATTCTATTTTCTCTATTTTATTTCCCTCTCTTTTCTTTTTACTCCCTTCCATCATTCCTTAAG
TCCCATAGGTTTGATCCTGTAGAATCTGATCCATTTTCTCATCGAGCGAAGGGTACGAAATAAAT
CTGATTTATTTGTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTTCTCTTCCTCTATCCCT
TCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTGTATGAATCGATATTATTACA
TTCCAATTCCTTCCCGAGACCTCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGC
GTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTT
TCGTGCTTTGGTGGGTCGTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATA
TGATCCGATCGATTGCGTAAGGCCCGCGGTAGCAACAGAACCGGG



Found at i:467500 original size:25 final size:22

Alignment explanation


    Indices: 467453--467497  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     467443 TACAGAAAAG

                                  
     467453 ACAGTTCTTTTCTATTATTATT
          1 ACAGTTCTTTTCTATTATTATT

                                  
     467475 ACAGTTCTTTTCTATTATTATT
          1 ACAGTTCTTTTCTATTATTATT

             
     467497 A
          1 A

     467498 TTATATTATT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.24, C:0.13, G:0.04, T:0.58


Consensus pattern (22 bp):   
ACAGTTCTTTTCTATTATTATT

Left flanking sequence: Indices 466953 -- 467452
TTTTATTTCCCTCTCTTTTCTTTTTACTCCCTTCCATCATTCCTTAAGTCCCATAGGTTTGATCC
TGTAGAATCTGATCCATTTTCTCATCGAGCGAAGGGTACGAAATAAATCTGATTTATTTGTCGAT
CAAAAGTACTATGTGAAATCTTCGGTTTTTTTCTCTTCCTCTATCCCTTCCCATAGGTACAGCGT
TTGAATCAATAGAGAACCTTTTCTTCTGTATGAATCGATATTATTACATTCCAATTCCTTCCCGA
GACCTCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGCGTGAGCTTATCCATGCG
GTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTC
GTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCG
TAAGGCCCGCGGTAGCAACAGAACCGGGTAAAGTATACAGAAAAG


Right flanking sequence: Indices 467498 -- 467997
TTATATTATTATTTATTAGTTAGTTAGTGATCCCGGCTCGGTGAGTCCTTTCTTCCGTGATGAAC
TGTTGGCACCAGTCCCCTATTTTTTCTCTGTGGGCCGAGGAGAAAGGGGGGCTCCGCGGGAAGAG
GGTTGTACCATGAGAGAAGCAAGGAGCTGTTTCAAATATACAACATGGATTCTGGCAATGCAATG
TAGTTGGACCCTCATGTCGATCCGAATGAATCAGCCTTTCCACGGAGGTAAATCTTTGCCTGCTA
TGCAAGAGGATAGCAAGTTACAAATTCTGTCTCGGTAGGACATGACATGTATTTTGATTACTATG
AAATTAATAAATGAAGTAGTTAATGGTGGGGTTACCCTTCTATTTTTTGTAGTGACGAATCTTGT
ATGTGTTCCTAAGAAAAGGAATTTGTCCATTTTTCGAGGTCTCAAAGGGGCGTGGAAATACATAA
GAACTCTTGAGTGGAAATGGAAAAGAGATGTAGCTCCGGTTGCTT



Found at i:467506 original size:14 final size:15

Alignment explanation


    Indices: 467487--467515  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

     467477 AGTTCTTTTC

                           
     467487 TATTATTA-TTATTA
          1 TATTATTATTTATTA

                           
     467501 TATTATTATTTATTA
          1 TATTATTATTTATTA

     467516 GTTAGTTAGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    8  0.57
  15    6  0.43

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (15 bp):   
TATTATTATTTATTA

Left flanking sequence: Indices 466987 -- 467486
CATCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGAATCTGATCCATTTTCTCATCGAGCGAAG
GGTACGAAATAAATCTGATTTATTTGTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTTCT
CTTCCTCTATCCCTTCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTGTATGAA
TCGATATTATTACATTCCAATTCCTTCCCGAGACCTCCCAAGGAAAATCCCGAATTGGATCCCAA
ATTGACGGGTTAGCGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTG
AAAGATCCTGGCTTTCGTGCTTTGGTGGGTCGTCCGAGATCCTTTCGATGACCTATGTTGTGTTG
AAGGGATATCTATATGATCCGATCGATTGCGTAAGGCCCGCGGTAGCAACAGAACCGGGTAAAGT
ATACAGAAAAGACAGTTCTTTTCTATTATTATTACAGTTCTTTTC


Right flanking sequence: Indices 467516 -- 468015
GTTAGTTAGTGATCCCGGCTCGGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCCCT
ATTTTTTCTCTGTGGGCCGAGGAGAAAGGGGGGCTCCGCGGGAAGAGGGTTGTACCATGAGAGAA
GCAAGGAGCTGTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGACCCTCATGTC
GATCCGAATGAATCAGCCTTTCCACGGAGGTAAATCTTTGCCTGCTATGCAAGAGGATAGCAAGT
TACAAATTCTGTCTCGGTAGGACATGACATGTATTTTGATTACTATGAAATTAATAAATGAAGTA
GTTAATGGTGGGGTTACCCTTCTATTTTTTGTAGTGACGAATCTTGTATGTGTTCCTAAGAAAAG
GAATTTGTCCATTTTTCGAGGTCTCAAAGGGGCGTGGAAATACATAAGAACTCTTGAGTGGAAAT
GGAAAAGAGATGTAGCTCCGGTTGCTTCGGAAATGGTAAGATCTT



Found at i:524876 original size:13 final size:13

Alignment explanation


    Indices: 524858--524883  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

     524848 AGAACTCATG

                         
     524858 TTTGCGCTTTTGA
          1 TTTGCGCTTTTGA

                         
     524871 TTTGCGCTTTTGA
          1 TTTGCGCTTTTGA

     524884 GATTCCTTCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.08, C:0.15, G:0.23, T:0.54


Consensus pattern (13 bp):   
TTTGCGCTTTTGA

Left flanking sequence: Indices 524358 -- 524857
AATATGAAAGGGATCCCAATAGCAATAGGAAAAGCAGAGAGGAAAGAGGAAAAAACCATTTTTTT
ATTCAAGTCAGGCTGCTTTCAGGCGTGTGCTCGGGTCTTCTTTTTTCATTAATCCTATTCTAGAG
CCTAGATCGAAATCCATTCTGTCAATGACTTGATTTGGCGACTACTAGCAATCAATCGCCTCTCC
AATTGATTTGAGAAGTAGAGACATTGGTAAGAGAATGAGTATTCGTACATCTCCTCAGAGGCAGC
GTTCGGCGGCTTCTTTGTCTTAATCTAAGCCTCGGATCTTGACCAACCATTCTTAAAGTCAAGCT
TGACTTTAGTGAGACTGATAGGTGATCCCCTTTAGGGACTACTTATCTTGTCTTAAATGGCTCTT
TCACATAGTGATGCAAGGGTATTAAACCATTGCTTATTCCTAATTAACTACGTATCCACCCCCGC
CTACCAGCTCGGTTCAGCTCTGGGGAGGTCAGGGAAGAACTCATG


Right flanking sequence: Indices 524884 -- 525383
GATTCCTTCTGTCCCTTTCCTTTACCTCCGATCTCCCCCGTCGCAGTTAGTATGGCTTGGCTCTC
CACATAGTAGTTCTAATGGCCTTTGTGAGTAAGGGCATCACATCGTCTCTTCTAAAGGATACCCA
TTCTTAACTATTCCATCCTATGGTCTGGTTGGAATAGCGGTACCACTAAAGAAGTCTGTTTCGCT
AGCCCCGATGACTTTGCGATAACTAGCTTGGGGAAACCCCTCCCTTTACGAGAGGGGACTAGAAA
ATGCCTGGACCCATTAGCATATGGAGTACAGTATACTAGTGACCGTGAGTTAGCCTATGCCGAGG
TGCAAAAGAAAGCATTCATAAAGCCTCTGAAACCGTTTCCAAGACATCCCATCCATGAATATGCT
ATGCTGCTTACTCTTCCGCTTAACGCACAAAAGATGGGAACTGTTGGGTACTCTAACACCATCTG
GCTGCCTCTGATCTTTTCGTTGAAGAAGCCTTTTCCACTACGGCG



Found at i:530793 original size:24 final size:24

Alignment explanation


    Indices: 530761--530821  Score: 122
    Period size: 24  Copynumber: 2.5  Consensus size: 24

     530751 GCCTTTCATC

                                    
     530761 ATAGTGGTGGAATGAAAGTCCTGT
          1 ATAGTGGTGGAATGAAAGTCCTGT

                                    
     530785 ATAGTGGTGGAATGAAAGTCCTGT
          1 ATAGTGGTGGAATGAAAGTCCTGT

                         
     530809 ATAGTGGTGGAAT
          1 ATAGTGGTGGAAT

     530822 ACCTGTGTCT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   37  1.00

ACGTcount: A:0.30, C:0.07, G:0.34, T:0.30


Consensus pattern (24 bp):   
ATAGTGGTGGAATGAAAGTCCTGT

Left flanking sequence: Indices 530261 -- 530760
AAAGCCTGATGCAGGTGCAAAGCCTACTCCTGGTGCTACTAAGAAGGTTAAAGACCTGGTGCAAA
TACTTCTGCATCTCGAACTGCTTCTCTAGCGGCTGGTGGTGTTGCTACATCAAAAGCTCCATCAA
CGGCATAATCAACAGGCTCTTACCTGCGCGGAGAGCCGGTCAGTATCAACAGAAAGGGCTGCTTG
GTCTAGATCTGGGAATGAAACTGGCGATCTCGATCAACTGGATCTTAAATTGCACCCGTAACTAA
GACTGGTAGTAGCACTTCTTCTGTATGATGTTCTTATCTTTATAACAATACCCGTAGCTGCAGGC
CACATCCTCTAGGAAGCAAACGAGTGGTGGAAATAGAGCCACGGTGTGCCCTATCGGGGTCTTCT
CTCGGGCAAACTTACCTGCCCACCCGTTTAGGGACAAGACAAGACAGAACCAGGGAGTCGCTTTG
GCACCCTTGAGTTGTGGTGCCTTCGTCGTAGCAGTGCCTTTCATC


Right flanking sequence: Indices 530822 -- 531321
ACCTGTGTCTGAGGAAAAGAAAAGATCGCTTTTAAGATTTCGCCGTTGCAGGAGAAAGGTAGCGG
TACCTATTGCATATCCGATTCTCCATTTCGTGGTGAGATCACTTCCGCAGAGCTTGATCTTTCCG
AGGGTAGAGTGCTCCTGTCGGATAACTTGTCTAATTCCCCATTCTTGCCTGGATGGGCTACTTCT
TCGTGGTGAGAACCCAGAGAATCAAAACGATCATTTATTTACAAAATGGTTGTCGCGAGGTAACC
CTCGAGGTACCCTTCCCTATCAATCGTTCGAAAATGAGTGGATTTCGTCCTGTGCCCAAAGCGGA
GGGTGCCCATTGCCGTGAAAGCTTTGATAGCGACCTACGCCCTATTTGTTCATCTATCTCATTCC
GGACTGCACGACTTCAAGTTCGATTCCCAATGTCTTGTTAGAAAGGAAATCTAATATATTCCGTC
TTGGACTTGACCCCGAAAGCAATCGAGGAAATTCCTTCTTTCTTT



Found at i:571851 original size:9 final size:9

Alignment explanation


    Indices: 571837--571933  Score: 167
    Period size: 9  Copynumber: 10.8  Consensus size: 9

     571827 AAAGAGCAAG

                     
     571837 TCAAAAGAA
          1 TCAAAAGAA

                     
     571846 TCAAAAGAA
          1 TCAAAAGAA

                     
     571855 TCAAAAGAA
          1 TCAAAAGAA

                     
     571864 TCAAAAGAA
          1 TCAAAAGAA

                   * 
     571873 TCAAAAGGA
          1 TCAAAAGAA

                     
     571882 TCAAAAGAA
          1 TCAAAAGAA

                   * 
     571891 TCAAAAGGA
          1 TCAAAAGAA

                     
     571900 TCAAAAGAA
          1 TCAAAAGAA

                   * 
     571909 TCAAAAGGA
          1 TCAAAAGAA

                     
     571918 TCAAAAGAA
          1 TCAAAAGAA

                   
     571927 TCAAAAG
          1 TCAAAAG

     571934 GATCGAACTA


Statistics
Matches: 82,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   9   82  1.00

ACGTcount: A:0.63, C:0.11, G:0.14, T:0.11


Consensus pattern (9 bp):   
TCAAAAGAA

Left flanking sequence: Indices 571337 -- 571836
CGACATATCAGTTGAAAAAATCATAGGAAAATTCCTGAATAAAAAGGTAAGAATGTGGAGAAGAA
CCAAAACAGAATGGTTCCGCCTACTCAAAACTAAGAGGGGGTGCCGCCTACTACTAAAATCCCCG
TTTTTGCAACGGTTGCGTTCTTCTATGCAAGAAAAAGACTTAGAAAGAACAAAGAAGTTTGGATC
CGAAAAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGCAAAATTTGTCTC
ATTTCAAATCGTTCCTTCTCTTCGATAAGAAAAACGAGAAAAACCGAAATCTTCGACTACTAGTT
CAAAACTCTGTTTTATATATAGTTTCGACCTATTGCTCCGGATCCCCCCATCAGTTTACTAGGAA
GAGAAGAATCAAAAGAATCACCGATCGCATCCGGACATATATGTGTAGAGAACGGAGCCAAGAAG
CAAGGGATTCGCGGCAATTCCGGCACTATTCAATAAAAGAGCAAG


Right flanking sequence: Indices 571934 -- 572433
GATCGAACTACCTAATAATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATG
GACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCACACCTTCATCTTCGGAGC
GGAAACGGACGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCGGACATATCTATCCGGATAG
AGGATAGTCTAGATCGATTCATAGATAGATCTCTCTCCATATAGATAGGTATCTCCGTGGATAGA
GATAAAGATAGGGATCCATCTAGATCTTGATTCACTATTTCCATTTTTTTTGATTCCGCCTTTTT
TACGACAAGTTTTAAATCAGGAAACATCGTTTTTCAATTATGACTTGCTGGGTCGGAGCGTAGAC
GAGCGAGCAGAGCCCAGGAAACAGGGAAGCCCGTCATAGAGCAGTCGACTAGAAGTAAAAGACTG
CTGGCCTGAGAGAAGCATGTAGAGGTGTATTTCTCTCTCGGGAAA



Found at i:571860 original size:18 final size:18

Alignment explanation


    Indices: 571837--571937  Score: 184
    Period size: 18  Copynumber: 5.6  Consensus size: 18

     571827 AAAGAGCAAG

                   *          
     571837 TCAAAAGAATCAAAAGAA
          1 TCAAAAGGATCAAAAGAA

                   *          
     571855 TCAAAAGAATCAAAAGAA
          1 TCAAAAGGATCAAAAGAA

                              
     571873 TCAAAAGGATCAAAAGAA
          1 TCAAAAGGATCAAAAGAA

                              
     571891 TCAAAAGGATCAAAAGAA
          1 TCAAAAGGATCAAAAGAA

                              
     571909 TCAAAAGGATCAAAAGAA
          1 TCAAAAGGATCAAAAGAA

                       
     571927 TCAAAAGGATC
          1 TCAAAAGGATC

     571938 GAACTACCTA


Statistics
Matches: 82,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  18   82  1.00

ACGTcount: A:0.61, C:0.12, G:0.15, T:0.12


Consensus pattern (18 bp):   
TCAAAAGGATCAAAAGAA

Left flanking sequence: Indices 571337 -- 571836
CGACATATCAGTTGAAAAAATCATAGGAAAATTCCTGAATAAAAAGGTAAGAATGTGGAGAAGAA
CCAAAACAGAATGGTTCCGCCTACTCAAAACTAAGAGGGGGTGCCGCCTACTACTAAAATCCCCG
TTTTTGCAACGGTTGCGTTCTTCTATGCAAGAAAAAGACTTAGAAAGAACAAAGAAGTTTGGATC
CGAAAAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGCAAAATTTGTCTC
ATTTCAAATCGTTCCTTCTCTTCGATAAGAAAAACGAGAAAAACCGAAATCTTCGACTACTAGTT
CAAAACTCTGTTTTATATATAGTTTCGACCTATTGCTCCGGATCCCCCCATCAGTTTACTAGGAA
GAGAAGAATCAAAAGAATCACCGATCGCATCCGGACATATATGTGTAGAGAACGGAGCCAAGAAG
CAAGGGATTCGCGGCAATTCCGGCACTATTCAATAAAAGAGCAAG


Right flanking sequence: Indices 571938 -- 572437
GAACTACCTAATAATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATGGACC
TAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCACACCTTCATCTTCGGAGCGGAA
ACGGACGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCGGACATATCTATCCGGATAGAGGA
TAGTCTAGATCGATTCATAGATAGATCTCTCTCCATATAGATAGGTATCTCCGTGGATAGAGATA
AAGATAGGGATCCATCTAGATCTTGATTCACTATTTCCATTTTTTTTGATTCCGCCTTTTTTACG
ACAAGTTTTAAATCAGGAAACATCGTTTTTCAATTATGACTTGCTGGGTCGGAGCGTAGACGAGC
GAGCAGAGCCCAGGAAACAGGGAAGCCCGTCATAGAGCAGTCGACTAGAAGTAAAAGACTGCTGG
CCTGAGAGAAGCATGTAGAGGTGTATTTCTCTCTCGGGAAACATG



Found at i:586479 original size:19 final size:18

Alignment explanation


    Indices: 586455--586499  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 18

     586445 TTATTTCTTC

                  *            
     586455 TCTTCTTTCTATACGCTAT
          1 TCTTCTATCTA-ACGCTAT

                       *    * 
     586474 TCTTCTATCTAGCGCTTT
          1 TCTTCTATCTAACGCTAT

                    
     586492 TCTTCTAT
          1 TCTTCTAT

     586500 TTTCTATTTA


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  18   13  0.57
  19   10  0.43

ACGTcount: A:0.13, C:0.27, G:0.07, T:0.53


Consensus pattern (18 bp):   
TCTTCTATCTAACGCTAT

Left flanking sequence: Indices 585955 -- 586454
GAAGGTTACCGGGGTCTAGGTTTATGGATGGATTCAGTCAGCGCCAACTCAATCAATATCAACAA
CATGTCGTTACCGGTTAGGTTAGGCTTGGTTGATGACTTTGTCAGAAAAGAAAGTAGGGTTCGGG
GGTTCATTGATTAGTAAACCTCAGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGGTTT
GCCGGCCGATAAGATCTCTGAGATTGACCAGCCAGCTGGGGCTATTCCTTTCTATTGAAAAGGAG
TCAGCTGCTTCCTCGCATGGAGGCGAGTAACTTCTATTCTTTTAACTAGCTAGCCATATGAGAAC
AGAGACATAGAAATTCTTTTCTTACAGCTGCTAAAGGATACCGGACTGCGACCCGACACGAATGC
CAGTGGGCGCTATTGCAGTCACATTGGCCCTGCCGCTTTGTCGAACGGAATGCTATGTCAAAGCT
CAAACAAATTACCCATTTCTAATGAGACGACTCTTTTATTTCTTC


Right flanking sequence: Indices 586500 -- 586999
TTTCTATTTATATGGGAATCTTGTTAAGATTGAACATTGCCTTTCTGGTTCTATTCAACTTTGTT
TTTAAGATTATTCCAGTTAAAGGATCAGGCTAAGAGAACGATAAGAGCATAAAGAGAGCCAAGTC
ATAGCGACTCTTATCATTAAGATTCGCTCTATTATGACAATACTTCTCACACTTTCGTTGACAAT
CTATGATACTTCATCCCGTGTCTTGCCCCGCAGTGATTTCGACTGGCCCTTGTAGCTCCGGGCGG
CGATCGGGACTATAATCGCTAAGGGCAGAGCGTCTCCGTACCGTGAAGGAGACCTCGTACCGTCA
CTCTCAACAACCAACATGAATGAACATCCTAACGGAGAATCTTAAAACGTATTGCTAAAGCATGA
TGGAGCATAGCTGAGGGCAGCGGTGGTACTTGCGAATAAGTACCACCCGTACCGTCACTCTTAAG
GCAGGAGGAGATACTTTTCTCTCTTCACCTGCAAGGGCTGTTGAT



Found at i:595838 original size:31 final size:31

Alignment explanation


    Indices: 595803--595865  Score: 126
    Period size: 31  Copynumber: 2.0  Consensus size: 31

     595793 ATGAAGTAGA

                                           
     595803 CAAATTCATGAATTGACAAAAATAAAATGGG
          1 CAAATTCATGAATTGACAAAAATAAAATGGG

                                           
     595834 CAAATTCATGAATTGACAAAAATAAAATGGG
          1 CAAATTCATGAATTGACAAAAATAAAATGGG

             
     595865 C
          1 C

     595866 CCTTTTAACT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.51, C:0.11, G:0.16, T:0.22


Consensus pattern (31 bp):   
CAAATTCATGAATTGACAAAAATAAAATGGG

Left flanking sequence: Indices 595303 -- 595802
CATCGAAAAAGCCAGACCAGTACGGTATCTCTTGGAATCCTGAATATGGTGCTACCAACAATTGT
ACCAATCTACATATGTCTCTCCCCGGTACTAGTTGAAGTAATTTAAATTACCTTATTTGGTTGGC
AACTAATCGAGTAGTTGAGAAATGCGAAACGAAAAAGTAAAAAAGAAAATGAAGGATCCTCCTGC
TGGGAATTAGATCCTGCTCCTTGTCCCCCCTCTTCACAGAAAATAAAGAAATGAATTGATGGGGT
CATCAGATACTATGTCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGC
TCTGACCGATTGAACTACAATCCCAGAGAAATAAGGAGCCATCTTTTTTCTCATTTTCTTTCATT
CGAACCATTTATAATCGCCGTGTTGTAACAGAGACACGAATGATATACTAACAATTGTTATACTA
TATAATAAAGAATTTATACTATATATTTAGTATAAATGAAGTAGA


Right flanking sequence: Indices 595866 -- 596365
CCTTTTAACTCAGCGGTAGAGTAACGCCATGGTAAGGCGTAAGTCATCGGTTCAAATCCGATACG
ATAAAGGGCTTTTTTATTTTCCACGAAACTCAATCAAGTCTTAGTCTTCATTTTTCAGCAGAGGA
TATATATAGAAAATAAAAAAATGTTTTTAGGCTTAATCCGCCTTTACTAAAGATCAAGGGACTTG
TACTCCGGCTAATAAGGGAAAGGATTTCTAAAAAAAAAAAGTTTGACTCTGATTACTATTAGTCC
GAAGCGCAAGCGCTAAGTAAGCAAGCTACCTAATGTAAAAAAAAACCGAGGCTAACGTCAAGTAG
AAACGAACAAGGTCTACGGCCATACTATCAAAGCACTATATCTTTTCTTTTCATTTCTCTCTCCT
CTATGGAAATAGGGGATGATACGTGGTATACCTGATCGGGTGGTCAACGAGACGTACGTAAGTCG
ACATAGCTCCATGTATATGTTCTTTGGAGCTAGAAGCCTTCCGGA



Found at i:610947 original size:64 final size:63

Alignment explanation


    Indices: 610875--610995  Score: 197
    Period size: 64  Copynumber: 1.9  Consensus size: 63

     610865 ACGCGCAATC

                                             *    *           *             
     610875 CAGCAAGAAAACGCCCTATATATATAAAGGCGGCACGCTATTAACACGAATTGGGGCTTTCGCG
          1 CAGCAAGAAAACGCCCTATATATATAAAGGC-GAACGCAATTAACACGAACTGGGGCTTTCGCG

                                           *                         
     610939 CAGCAAGAAAACGCCCTATATATATAAAGGCTAACGCAATTAACACGAACTGGGGCT
          1 CAGCAAGAAAACGCCCTATATATATAAAGGCGAACGCAATTAACACGAACTGGGGCT

     610996 GGTAGCGCTA


Statistics
Matches: 53,  Mismatches: 4, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  63   22  0.42
  64   31  0.58

ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19


Consensus pattern (63 bp):   
CAGCAAGAAAACGCCCTATATATATAAAGGCGAACGCAATTAACACGAACTGGGGCTTTCGCG

Left flanking sequence: Indices 610375 -- 610874
ACCTAATCTATATATAGAAGCAGATCACGGAATGACTCATCCATCATATCTATCTATCAGTCTCA
TAAGAAAGGCGTATAGAGCCACAACAAAGAAAGGGCCTAGGTCGTATGTCCTTACGTATCGTATA
AATTAGGACAACCTCACCTCAACTTGTGCGACTCCCCCGTAAGGTTCCGTTCCGTCATGTTCTAA
CGCAACGCCTTGCTGTATTGTATTAAAGACAGTCAATGTATGTTAGTGACTCCGCCTTTCATGTC
GGTTCTCTTTAATGCTTGTTGTTGTTTTCGTTGCTTGCTTGCAAGGTCAACGTCATTTAGACATT
GGACGCTGACGCGAGACGAAGCGGTTAGTGTACCAAGCTTGGAACTTTCACGGCTCAACTCCATG
AATTGTTCAAGGGTCAAACCGTCAAGCATGGTAAGGACATACCTTCAATGAAGAAAGCTAAGCTT
AGTTTGCTTAAATTAGTGAAAGTGAAAGATTAAAGACGCGCAATC


Right flanking sequence: Indices 610996 -- 611495
GGTAGCGCTAGCGCGCTCATCCGTTGCTTGTTTAGATTCATTAGTTGCCAATTCGTTAGTAAGCG
CCCCTAGATGCCGCAATCCCCAAAATGTCTATAGTAGAGCAATTCGTTAATAAACGTCAAGAACC
AGCAAGAAAACGCCCTATATATATAAAGGCGGCACGCAATTAACACGAATTGGGGCTGGTAGCGC
TAGCGCGCTCATCCTAAGCTTGTTCTAACGAATGAATTGAATAGTGCCGGAATTGCTCTGGCTTC
TTCGGCCCGTTTGCTGGGCGAGTTCGGTTCTAGTGTTCATCGATCGGGTGGTCCCCGGGGGGGGT
GAGACGAGGTGTAGCGCAGTCTGGTCAGCGCATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAA
TCCTGTCACCTTGATGTGAGGCTTCAGCTTCACAGCAGGCTTCGGCTAGTTAGAAAACCGAAAAA
GGGGATTTTTTTTTGTTACTAGATTGTTCCGATCTATGATTTTGA



Found at i:667128 original size:74 final size:78

Alignment explanation


    Indices: 667027--667172  Score: 201
    Period size: 79  Copynumber: 1.9  Consensus size: 78

     667017 GAGCGCCTAG

                                                                   *       * 
     667027 CGCGAAAGCCGTAGCGCAACAAACAACGG-T-A-GAGC-ACCGCGAAAGCCGTTGTGCAACAAGC
          1 CGCGAAAGCCGTAGCGCAACAAACAACGGATGACGAGCTACCGCGAAAGCCGTTGCGCAACAAAC

                         
     667088 AACGGATGAGCAC
         66 AACGGATGAGCAC

                        *         *             *    *                       
     667101 CGCGAAAGCCGTTGCGCAACAAGCAACGGATGAGCGCGCTAGCGCGAAAGCCGTTGCGCAACAAA
          1 CGCGAAAGCCGTAGCGCAACAAACAACGGATGA-CGAGCTACCGCGAAAGCCGTTGCGCAACAAA

                   
     667166 CAACGGA
         65 CAACGGA

     667173 ACAAGCTTAG


Statistics
Matches: 61,  Mismatches: 6, Indels: 5
        0.85            0.08        0.07

Matches are distributed among these distances:
  74   27  0.44
  75    1  0.02
  76    1  0.02
  78    3  0.05
  79   29  0.48

ACGTcount: A:0.34, C:0.29, G:0.29, T:0.08


Consensus pattern (78 bp):   
CGCGAAAGCCGTAGCGCAACAAACAACGGATGACGAGCTACCGCGAAAGCCGTTGCGCAACAAAC
AACGGATGAGCAC

Left flanking sequence: Indices 666527 -- 667026
TAACTGTATAGTAAGTGCTGGCTTGTAAAACCAGACTTGGTCTGCCATGGGAGAGCAGAGCAAGT
GAGTGTTGTATCCCGTAATTGTACAGCAATCAAAATTGGGCTGGTGCCCTCCCTTTACCATGTGT
TGTTGTGTGTGTTCTTTCATAGACTGCAAAACAGTGTGTGTATGCGTAGTTGAATAGCCTGACTA
GGAAGGATTTCTAGTGGCATCGCAGGGCAAAAAAAAAGTTGGGCTAAAATTGGACCCTGTGACAG
TTGGTAAAGGGCACCAGAAGATCCGGGAGATGCAAGAATTATAAAGGAATAAGAGCTAGGATTCA
ATACTCTTTTTATTATTTGATTGGAGACTATACGAGACTCTTATACTCAACGGTTTTTGAATTCA
TACGTTCTTTCTGAATATGCGTTCTATACTATATGAATAGCGTTCTATTCCATGTAAGCTCTTCT
CCTAATTCCGAACCGGTACTGAACAAGCTAGGGATGAGCGCCTAG


Right flanking sequence: Indices 667173 -- 667672
ACAAGCTTAGGATGAGCGCGCTAGCGCTACCAGCCCCAGTTCGTGTTAATTGCGTTAGCCTTTAT
ATATATAGGGCGTTTTCTTGCTGCGCGAAAGCCCCAATTCGTTAATAGCGTTAGCCTTTATATAT
ATAGGGCGTTTTCTTGCTTAGTCGAGAGTGCCGAACGTAACGGAGATAAGATAGAGCGGAACGGA
GCTAAAGCAGTCGATAAAGGCGTTGTTTCTTCTCAAGCTCTTTCTCCTTCCTTCCCAACCCTGCC
CTTTTAGCTCTTAGGTAAGTAAGCTCCTTGCTCTTTCTCCGGAAGCTAATCCACCCCAATACAAC
CTGTCTGGCCTTTCACAAATCTTTTCCTTTCTACCTATTTACTCCATGAATTAGCGTCGACCTGT
CTTTTCAGCTTCGACACCAGCGGCTACTTAAGCTGAAGCTCCTGTTCAAGGGAAGGGTTCCAAAC
CAGCCTTAGAACCAACCTTAGACCGGACCCAGAAGCAACCTGAAG



Found at i:667148 original size:42 final size:39

Alignment explanation


    Indices: 667003--667172  Score: 186
    Period size: 37  Copynumber: 4.3  Consensus size: 39

     666993 ACCGGTACTG

                   * *             *            *    
     667003 AACAAGCTAGGGATGAGCGCCTAGCGCGAAAGCCGTAGCGC
          1 AACAAGCAACGGATGAGCG-C-ACCGCGAAAGCCGTTGCGC

                 *           *                  *  
     667044 AACAAACAACGG-T-AGAGCACCGCGAAAGCCGTTGTGC
          1 AACAAGCAACGGATGAGCGCACCGCGAAAGCCGTTGCGC

                                                   
     667081 AACAAGCAACGGATGA--GCACCGCGAAAGCCGTTGCGC
          1 AACAAGCAACGGATGAGCGCACCGCGAAAGCCGTTGCGC

                                    *                 
     667118 AACAAGCAACGGATGAGCGCGCTAGCGCGAAAGCCGTTGCGC
          1 AACAAGCAACGGATGA--GCGC-ACCGCGAAAGCCGTTGCGC

                 *       
     667160 AACAAACAACGGA
          1 AACAAGCAACGGA

     667173 ACAAGCTTAG


Statistics
Matches: 111,  Mismatches: 11, Indels: 13
        0.82            0.08        0.10

Matches are distributed among these distances:
  37   63  0.57
  38    2  0.02
  39    4  0.04
  40    1  0.01
  41   11  0.10
  42   30  0.27

ACGTcount: A:0.34, C:0.28, G:0.30, T:0.09


Consensus pattern (39 bp):   
AACAAGCAACGGATGAGCGCACCGCGAAAGCCGTTGCGC

Left flanking sequence: Indices 666503 -- 667002
TCTTCTTCTTGTATTGCAGTAGGATAACTGTATAGTAAGTGCTGGCTTGTAAAACCAGACTTGGT
CTGCCATGGGAGAGCAGAGCAAGTGAGTGTTGTATCCCGTAATTGTACAGCAATCAAAATTGGGC
TGGTGCCCTCCCTTTACCATGTGTTGTTGTGTGTGTTCTTTCATAGACTGCAAAACAGTGTGTGT
ATGCGTAGTTGAATAGCCTGACTAGGAAGGATTTCTAGTGGCATCGCAGGGCAAAAAAAAAGTTG
GGCTAAAATTGGACCCTGTGACAGTTGGTAAAGGGCACCAGAAGATCCGGGAGATGCAAGAATTA
TAAAGGAATAAGAGCTAGGATTCAATACTCTTTTTATTATTTGATTGGAGACTATACGAGACTCT
TATACTCAACGGTTTTTGAATTCATACGTTCTTTCTGAATATGCGTTCTATACTATATGAATAGC
GTTCTATTCCATGTAAGCTCTTCTCCTAATTCCGAACCGGTACTG


Right flanking sequence: Indices 667173 -- 667672
ACAAGCTTAGGATGAGCGCGCTAGCGCTACCAGCCCCAGTTCGTGTTAATTGCGTTAGCCTTTAT
ATATATAGGGCGTTTTCTTGCTGCGCGAAAGCCCCAATTCGTTAATAGCGTTAGCCTTTATATAT
ATAGGGCGTTTTCTTGCTTAGTCGAGAGTGCCGAACGTAACGGAGATAAGATAGAGCGGAACGGA
GCTAAAGCAGTCGATAAAGGCGTTGTTTCTTCTCAAGCTCTTTCTCCTTCCTTCCCAACCCTGCC
CTTTTAGCTCTTAGGTAAGTAAGCTCCTTGCTCTTTCTCCGGAAGCTAATCCACCCCAATACAAC
CTGTCTGGCCTTTCACAAATCTTTTCCTTTCTACCTATTTACTCCATGAATTAGCGTCGACCTGT
CTTTTCAGCTTCGACACCAGCGGCTACTTAAGCTGAAGCTCCTGTTCAAGGGAAGGGTTCCAAAC
CAGCCTTAGAACCAACCTTAGACCGGACCCAGAAGCAACCTGAAG



Found at i:691839 original size:18 final size:18

Alignment explanation


    Indices: 691816--691850  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

     691806 AAGGCCCCAT

                       *      
     691816 CCTTTGACTTGTGATTGG
          1 CCTTTGACTTGCGATTGG

                             
     691834 CCTTTGACTTGCGATTG
          1 CCTTTGACTTGCGATTG

     691851 ATTAGCTCTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.11, C:0.20, G:0.26, T:0.43


Consensus pattern (18 bp):   
CCTTTGACTTGCGATTGG

Left flanking sequence: Indices 691316 -- 691815
CGGATTTCGCCCCGGCTCGTACACCGCCCTGCACTGTAGGAATAGGAAGAGAATCCCTCCCTCCA
GGGAACAGCGTCCCTAGTCCGTAAGAGTGTCTAAAACCTGCCTCCCTCCAAACTAGTCCATTAGT
GGGTCTAGCCTTCCCTCTCGCCAGTCTCGTCTCAGTCTAGAGTCTACAATCCCTGTCCCTTCGGT
TAGCAGTGAACGGAACTATTGTTGCAGGTAGGTTAGGTCCCTATCTCGTGACTTGTTATATAGGC
ACGAAACCATTCCAGCCAGCAAAGGGCTTCGCCTCTGAGTTAACGGCCTTCATCTGGCTCGTGTC
CCGCAAGGTTGAAAATCCAGCTTCTTGACCTTTTGTTCTGAAACAAAGTGATGAGTGGCGCCAGG
CCACCGCATCCCAACCATTGATAGCTACCAGAACGAACGTACATTAGCCTCCAGGCTTCTCCTCG
GCGGATTCCCCCCCTTTATAGCATGAAGGAGCAGCAAGGCCCCAT


Right flanking sequence: Indices 691851 -- 692350
ATTAGCTCTAGTATCCATCCCTCACTATGTGAGTCTCTCCTCGCCCTAACGTAGTTTCAAACAGT
TCCCAGTCAATTCTTAATGGTACATTGGAACACACCACCTGAAGCCTGTTAGAGCTAAGGGCTGG
GGAATAGTAATAGGAATTAAGACTCAATCCTTTTAGATTGCCCTTCCTTCTTGGAAGAAAGCCTT
GGTTGAGCGGTGGATCAGGGAGTGACTCGACTGTGTTGGAGAGGTAAGCGATCAAACGGAAGAGA
GCTACCCTCAAGCTAAAGACGGAACTACTCGCTCTTCTCATTCTGTTGCTTGGTCAGTTTCGGTG
TGTTACACCGGCCTTCGGACGGACTATTCACAGGCACCGAGCCTGTTTTCTTTCCTTTCCGCGCT
AGGGCCTAGGTCAGCCGACTCTCTTGCTATGGCCTACGATTGCTTGACTCCCCCTCTATCTTCTC
TTCTTCTTCTGCCTCCTGAGCCTCCGTTTGCTCCTACTGTTGCGG



Found at i:702182 original size:9 final size:9

Alignment explanation


    Indices: 702168--702192  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

     702158 AGAATATAAA

                     
     702168 TTATTTATT
          1 TTATTTATT

                     
     702177 TTATTTATT
          1 TTATTTATT

                   
     702186 TTATTTA
          1 TTATTTA

     702193 GATATATATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76


Consensus pattern (9 bp):   
TTATTTATT

Left flanking sequence: Indices 701668 -- 702167
TAAACAAGCAACGGATGAGCGCGCTAGCGCTACCAGCCCCAATTCGTGTTAATAGCGTGCCGCCT
TTATATATATAGGGCGTTTTCTTGCTGGATTGCGGGGCCTTGCTTCTTGGGTTTGCGACTGAAGG
AAGTAGGGCTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTTTAGAATGAAAGTAGCTATGAA
GCCCCTACGACTTTGTTTGATTCAAAAGGCGAACAGCCCCCCTTATAGTCGTATGGGGTGGGGTG
CTTGTGGTAAGCTGCCTTGGATATGAGGAAGAAAAAAAAAAAAAGACAAAGCGGTATTTGACGAA
GATCTTTCTATCAATAGATAGGAATGAGTGTTCGATATAGGGGATAGGATTCATCTGCTCTTTCT
CTCTCCATTTTTTGAGAGAGAAAGAAATATAAAAATAATGGAGAGAGAAAGGATACATAGACATC
TAAAGGGATGTCTATTCTATTCCTTTATTTTAGAGAGAATATAAA


Right flanking sequence: Indices 702193 -- 702692
GATATATATATCGTTCATCTATGTCTATCTATCCATTGATTCTATCTATGAATGAAGTAAAAAAA
AACACTTTTTGGGTTCCCCGAATGGATTGGATCGTTTCTGCCAACGAAATGAACGCGGAGCCCGT
TCCGAATGCTTATCCGATCCGGAAGTTCTAGCGAAGAGAATAAGATGCTGCTCCCCCTCCATCTG
TCTTTTCCCGCTTTGCTAATCTTCCCCCTCTAACGCGGGCCGGGCGGCGGCGGGCGCGGGAGGAA
TAAACCTAAGAGAAGACGCTCTTATCTTAGGTCCTTTTTTCAGTGCAAGACAGGAAAGCGCCCTA
TTTTGTTCATCCCTGCAGCTTTCCAGAGGCTTCTTTTTTGGTATTGAACGCATGGCGTAGCTAGG
ACCCTTCAATGTTTGAGCCTATGTTCAAACCCACCCCATAGCGAAAGAATGCCCGCCAAGTTCAG
ATAAGGGAATGCTTCCCCCAACCACTAAAGGAAAGGCTCGACGAA



Found at i:720273 original size:21 final size:21

Alignment explanation


    Indices: 720247--720288  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     720237 AGTGAGGCAA

                                 
     720247 ATTTCATTTGATTAATTCGAC
          1 ATTTCATTTGATTAATTCGAC

                                 
     720268 ATTTCATTTGATTAATTCGAC
          1 ATTTCATTTGATTAATTCGAC

     720289 CGGAATATTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.14, G:0.10, T:0.48


Consensus pattern (21 bp):   
ATTTCATTTGATTAATTCGAC

Left flanking sequence: Indices 719747 -- 720246
AGGAATGGCTCTGTAAAGTAAGGAATTTAGGCATTAATGGAGGTGCATGATGAAATCAGATATGT
TATCAATCAATAGTGAAAGGAGCACGAAAATGCTCTAGCACTAGGGCCCACCTAACAGTGGGTCC
CAACTTCCCCTACGACTACAAGGCTCATGATTTTCCTTGTATTGCCTACACCGCCTACCGATGAT
ACCAACAGTGCAGTAACCACCTACGAGACAATTCGCCGATATCCAGACTGAGGGCAGACCAACAT
ACCAATGCTGGGTCACAGCTATTGCAGTTCTGGGAAAAGAGAGTTCCTTCTCAGACGACAGGGGA
TCAGCTCGAGTACCACATCCTTTACGACCGGCATCTTCTGCTCTCGGAGCGACTGCAATCGCTGC
AGCAAAACGTCCCCTCTTAATTGACTACTGCCATACTATCAAAGAAATTGGCGATAGACGAGAGG
AATCTTCTTCGTAATTTTATACTAAGTTACTTACGAGTGAGGCAA


Right flanking sequence: Indices 720289 -- 720788
CGGAATATTACTAAAATGAAACCGTTCAGTTCGAACAACTAAAGAGCGCAAGTTAGGCAGCTATT
TATGAATCCGTCTTCTCAATCTCCGAAGATTCCTTTGTGCAAGCACCAAGGCGGTGCTCATACCT
TTAATCAGGGGAACGAAGGTCATTTGAATCGCTATTATCTCATCCCTTTTCTTACCCATTTGCCT
TGATTATAGCCCTAGGGTCAGCAAGTGAACGCACTTGCTCGTCAGTCTCAAGATTGGACCGCCCC
CGCCTCTGCGATTGTGCTGTTGATGGCGAGGGAGAAGTAGTTGAGCCAGTCAATTGATAACAGGA
CAGGGAAGCCTTTATTGGGGATTTAGGCTAATGAGAGCCAGATAAGAATCCAGGTGAGGGTGGGA
CTCCTCCAAGTCTAGAAGCTTTGCCGATGACTTAGAGAACGACAATCGTGTTTCGAAATTAGTTT
AAGGGAGTGGTCCACTCTTTGCAGCAGCAAGAGTAGCTGCTTCGA



Found at i:724639 original size:21 final size:24

Alignment explanation


    Indices: 724595--724640  Score: 62
    Period size: 21  Copynumber: 2.0  Consensus size: 24

     724585 CTACGTATTT

                               *    
     724595 TATAACAAGAATAGCAGCTTCTTC
          1 TATAACAAGAATAGCAGCTCCTTC

                                    
     724619 TATAACAAG-A-AG-AGCTCCTTC
          1 TATAACAAGAATAGCAGCTCCTTC

             
     724640 T
          1 T

     724641 TTTTCTTGCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  21    9  0.43
  22    2  0.10
  23    1  0.05
  24    9  0.43

ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28


Consensus pattern (24 bp):   
TATAACAAGAATAGCAGCTCCTTC

Left flanking sequence: Indices 724095 -- 724594
ATTTGAAACAGAATAAAGCTTTTTGTGTTAAGGGACGACGTAACTCTATTCAGATCCTTGCTTCG
CTTCGCACCTCGTCATAGCCCTGAAAAGCTCACTCGGAGTTCTAGTTAGAGAATGGGATATGATT
AACTACTTGCCTACTGCTACCTGGGATTCCTCGGAAGATCGAAGAAGGTATAGTATTAGACAAGG
TTCATTCCTTCTCGAATTCGGATCTTCAGAAGAAGAAGGTATTTCTTCAAGAGGCACTTCATTTG
AGACTTTGATATGTCCGACTTGACTTTATATTTCTTAATTATGACCCGGGGTCACTCGCTGCCCT
AACCCCTAAGTGCCTTCACTCCCTTTAGAGCCCTGAATGGGAAAGTCATAAAGAGCGGAGCCGTG
AAAAGAGCAGCTGAGATTCCTCAAAGACTAGCAAGGCTTACTCTAACAGCGGGAAGAGCAGATAG
TAGAACAGCTCCATTGAGTAGACTCATTTCCGTAGCTACGTATTT


Right flanking sequence: Indices 724641 -- 725140
TTTTCTTGCTAACATAAGGAAGTGCATATAAAAAACAACCTCGGAGAATGAAGACGCTCTTGTCT
TACCGCATACCTGGATCTACTTCTAACATGCCCCACGAAAAGCTAAAACTCAAGCACTCAACAAG
CCGTTGCAATACCTTTGTTTGGTTGCCTGGGTTAAGATGCTTTCGCTGATTGATTCCTTATGGCT
TGATTAGCGTGAGTAGCTTAAGTTGTTGCAATGGTCAGGGTAGCTACGGCAAAGTCTAATAAAGA
GGACACCTTCTATTTGTAAGCAGTTCCCCTTCTAGTGGTTCAATAGCCTGCCACCTGACGACAGT
TCGTGTTTGTAAAGAGACTGCAAGGTAAGGCTATGGGATAAGAGACGGCTATTCTTCCGAGTTGA
ATGAGGACCATTTCCTCGCCCCACCCGGGAGAAGTGCATTCCTATCAGAGTTGGTAGTAGAAAGC
TATCCTATCCCAGTAAGTGGCTAGGTTGTTAGAGAGCGGATGATA



Found at i:724639 original size:24 final size:24

Alignment explanation


    Indices: 724595--724641  Score: 67
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     724585 CTACGTATTT

                       *    *       
     724595 TATAACAAGAATAGCAGCTTCTTC
          1 TATAACAAGAAGAGCACCTTCTTC

                           *       
     724619 TATAACAAGAAGAGCTCCTTCTT
          1 TATAACAAGAAGAGCACCTTCTT

     724642 TTTCTTGCTA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30


Consensus pattern (24 bp):   
TATAACAAGAAGAGCACCTTCTTC

Left flanking sequence: Indices 724095 -- 724594
ATTTGAAACAGAATAAAGCTTTTTGTGTTAAGGGACGACGTAACTCTATTCAGATCCTTGCTTCG
CTTCGCACCTCGTCATAGCCCTGAAAAGCTCACTCGGAGTTCTAGTTAGAGAATGGGATATGATT
AACTACTTGCCTACTGCTACCTGGGATTCCTCGGAAGATCGAAGAAGGTATAGTATTAGACAAGG
TTCATTCCTTCTCGAATTCGGATCTTCAGAAGAAGAAGGTATTTCTTCAAGAGGCACTTCATTTG
AGACTTTGATATGTCCGACTTGACTTTATATTTCTTAATTATGACCCGGGGTCACTCGCTGCCCT
AACCCCTAAGTGCCTTCACTCCCTTTAGAGCCCTGAATGGGAAAGTCATAAAGAGCGGAGCCGTG
AAAAGAGCAGCTGAGATTCCTCAAAGACTAGCAAGGCTTACTCTAACAGCGGGAAGAGCAGATAG
TAGAACAGCTCCATTGAGTAGACTCATTTCCGTAGCTACGTATTT


Right flanking sequence: Indices 724642 -- 725141
TTTCTTGCTAACATAAGGAAGTGCATATAAAAAACAACCTCGGAGAATGAAGACGCTCTTGTCTT
ACCGCATACCTGGATCTACTTCTAACATGCCCCACGAAAAGCTAAAACTCAAGCACTCAACAAGC
CGTTGCAATACCTTTGTTTGGTTGCCTGGGTTAAGATGCTTTCGCTGATTGATTCCTTATGGCTT
GATTAGCGTGAGTAGCTTAAGTTGTTGCAATGGTCAGGGTAGCTACGGCAAAGTCTAATAAAGAG
GACACCTTCTATTTGTAAGCAGTTCCCCTTCTAGTGGTTCAATAGCCTGCCACCTGACGACAGTT
CGTGTTTGTAAAGAGACTGCAAGGTAAGGCTATGGGATAAGAGACGGCTATTCTTCCGAGTTGAA
TGAGGACCATTTCCTCGCCCCACCCGGGAGAAGTGCATTCCTATCAGAGTTGGTAGTAGAAAGCT
ATCCTATCCCAGTAAGTGGCTAGGTTGTTAGAGAGCGGATGATAG



Found at i:734585 original size:19 final size:19

Alignment explanation


    Indices: 734561--734599  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     734551 GGTCAGGAGG

                               
     734561 GAACAAGCAACGGATGAGC
          1 GAACAAGCAACGGATGAGC

                               
     734580 GAACAAGCAACGGATGAGC
          1 GAACAAGCAACGGATGAGC

             
     734599 G
          1 G

     734600 CGCTAGCGCG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.41, C:0.21, G:0.33, T:0.05


Consensus pattern (19 bp):   
GAACAAGCAACGGATGAGC

Left flanking sequence: Indices 734061 -- 734560
TAGGGAGACTAATACTAACCCGAATCCGGGAAAGGATCCGTAGACAGCACTGTGTGGATGGGGTA
CCGCTCACTGCACGGCTAAGGGAACTCTGTCTTGTATGCTAAGAGAAAGTCTTCGGTACAACTCT
TCTTTCCTCCCTTCACTCCTCTCCTAACGCAGGCAAGGCAACAAGTAAGCTCTTAGCGCTTCTTT
GGCAAAGGCTACTCGCTCGCGGTAGAGCTGTCTTTGCTAGTTTTATTGCTGGCTCTAAGCCTACC
TCCTTGTCTACATCCTGATAACCGCCTGCCTGCCTTGACAGAAGAAGCAGTGCAGTAAGCGTCTC
CGGACATATAAAGTAGGCAATCACTTACTATATTGCTATCACCGGACGAGAGGTAGGTTTCAGTC
GTAGTTTCTGGTATCGACCCTATTCTAACTTGTAAGCAGTGGGAAATCTCTATACGATTGAAGTC
AGTGTGCAAGGAGCTCTAGTTTCTAGTCGTTGTATGGTCAGGAGG


Right flanking sequence: Indices 734600 -- 735099
CGCTAGCGCGAAAGCCGTTGCGCAACAAACAACGGAACAAGCAACGGATAAGCGCTAACGCGCGA
AAGCCCCAATTCGTTAATAGCGGCACATACGTTTTCTTGCTGCTTCTTTCTTCTTTCTGCGTACC
TGCCTCTCTATCCCCTTCTTTACTGAGTAGGGTTCCCGGGTGCCTATACGATTAGTAAGGCAGGA
TGCTACTGTACCAGTAGTGGAGTGGCTTGAATCAAATCGTTTGTCTAGAGAGGGTGTAGCGATAA
CCAAAGCTGACTGTACTATAAAGAAAGTCAAGATGTTGTATAGGCAACTGGCCTTAGAGTAGTGT
ATCGAACTACAAGACAGGAGCGAGCCATAATCATTGACGAAGAGGAAGGCTTGTGCCTGACAATG
AAGGTCTGTTCTGTTGTTGAAGCGTTAGGGAACGTCGAAGCTCGAGGCAAGTTGTGCCCTTAGAG
TAATATATTTGTTAGCCTAAATCTTTCCTTGCTCGTCTTTTCCAG



Found at i:746326 original size:28 final size:29

Alignment explanation


    Indices: 746274--746331  Score: 93
    Period size: 28  Copynumber: 2.0  Consensus size: 29

     746264 AGTGGCGCTG

                                         
     746274 CTAGCGCTACAGCCGATTTTCTCT-CAGC
          1 CTAGCGCTACAGCCGATTTTCTCTCCAGC

                                          
     746302 CTAGCGCTACAGCCGA-TTTCATCTCCAGC
          1 CTAGCGCTACAGCCGATTTTC-TCTCCAGC

             
     746331 C
          1 C

     746332 CTTGCCCGGC


Statistics
Matches: 28,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  27    4  0.14
  28   19  0.68
  29    5  0.18

ACGTcount: A:0.19, C:0.38, G:0.17, T:0.26


Consensus pattern (29 bp):   
CTAGCGCTACAGCCGATTTTCTCTCCAGC

Left flanking sequence: Indices 745774 -- 746273
AAGGCCCTTGACACCAGACCTGGAATATTTTAAAAAACGAAAACTCTAGAAGAAGGAATTCTTAA
ACCTCCTGCTGTAGTTTGAGTTTTAACGGTATCTTTCAAATAAGAACTTGGGGGAGCGGCTAAAG
CAATAAATATCTTAATTGAAAACTACTAAAGATTTGCCTCCCCGGTAGGTTAAGGGGTAGGAACA
ACGTGCTGCTTGTAGCGTAGGCTAATCGATCAACTATCCTCCGCTACTGGACGACTGCCCCTAAC
TTTACTGGACCAGGGCTTCCCCCAAGCTGCACTACGTTTCGTCTTCAAAAAACAACTCTCTTCCG
GCCAACTAGCTCAGGAACTCTCGCTCAGTAGCTCACTACTGTTTCCGGACTAAGGCTTTTACCGC
CTGAGACTTTGGGGGCGAGTATTTGCCTACCCGCTCCTGGCGGACAGGGAAGGGAGAGGTATGAG
AAGCATAGTCCTCTCCCTTCCGATCCTTGAACTGGAGTGGCGCTG


Right flanking sequence: Indices 746332 -- 746831
CTTGCCCGGCAGGCGCCCTCACCCTCTTTCGATACTGTGAACCTGAATGGTGGATTGAAAGAAGT
CTGGATCCTTCTGGCCCTTTTACACCTTATCTAGTCAAAGGCAGCAATGAAAGGCTTGATCTCCA
TGTTCGAATTGGGGAAGAGTGAATAGAATCATATTTCTTGACCATTATATATTTTGGAGAAAGGG
AGAGGGAATTGGCATGGAGGAATGGTATTCTGTTAATAAGAGGTGGATCCGGAGCGGAGTCGGGA
GCAAACTCCCTCACCAGGGTGAGGAGTTCTAACTCAGGGAAGAAGGGCGACTATTCCTAAGTAGC
AGAGGGTGCCTTATGTGAATAATCATAATTTGGGATGCGCTATTAAGGAACAAGTACGGGGTCTT
CCAACGCTGTTACAAGGGTGGGCGTACTCAATGAGTTCTATCAATATCCAGTTCCTTCTGTACGT
ACACCCGAAGTTGGGCCGGGTAGACATGAAGTTGAAACTACCACA



Found at i:811913 original size:26 final size:27

Alignment explanation


    Indices: 811884--811941  Score: 73
    Period size: 27  Copynumber: 2.2  Consensus size: 27

     811874 GCTCGTTTAG

                      *                
     811884 CTAGGG-AAATGCCTTAACGTAAATTC
          1 CTAGGGCAAAGGCCTTAACGTAAATTC

                   **   *              
     811910 CTAGGGCCTAGGGCTTAACGTAAATTC
          1 CTAGGGCAAAGGCCTTAACGTAAATTC

                 
     811937 CTAGG
          1 CTAGG

     811942 TTTGAGCAAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 1
        0.84            0.12        0.03

Matches are distributed among these distances:
  26    6  0.22
  27   21  0.78

ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26


Consensus pattern (27 bp):   
CTAGGGCAAAGGCCTTAACGTAAATTC

Left flanking sequence: Indices 811384 -- 811883
AATACACATCTTGCGGTTCCGTCTTCCGCAAGCAGCGCGTTTAGGTTCAGTGGTCTTATACGACA
TTTGTTGGAACAAGGCCCTAGTAGAGTAATCAGACGATTCTAACCACAAACTCTAACTCTTAATT
CCTGTATTGGGTTTGCACTCATTTTCTTTATCACTTAAAGTTGATGACTAATGAAAATCCCGCGG
TTTGCAACTTCCGAAAAAGGCAAAATTGTTCATGAAAGACAAGACTTTATTCGCATCTACCCTCG
GCAGGGAATAGCCACCTGAAAGCTCATATCTGTGCTCCCTTGCACTCGGTTGAGGTAGGTTTGGT
ATTGCTTGAAAGCAGAGGTGAATAGAGGGGCCCCCTAGCGCCGATTCAAAGGGCTTAGCTGTGAC
TGCCCCATCTCGTTTTAAGTTGAGTTAGGTTTTTGCGTTAACGCCAATGTTGAGAAAGAGATGGG
GGTTGTTGCTTGCCTGAACATTAACCCAATCTTATGCTCGTTTAG


Right flanking sequence: Indices 811942 -- 812441
TTTGAGCAAAGTATAAAGTGGCAAGTTGAGTTAGGCAAAAGCAAATTCAAGTGTTTGGCCACCTT
ATGGATAAATGACTGAAAAAAGGAAAGACGCTAAATAACTAATTACTCTTTACATATTCCTGCCC
TGTCGCTTACAGTCAATCATGCTCTTTCAGTCGAAAGTTGACTTCATCCCCGGTGACCGGTCCAG
TAGGACGCTTTGGGCGGAAACTACTTTTTTATCTGTCGACTGATTGAGCAGGTATACTGTAAGCG
TAAGCGCTTATGATTCTTATTATACGACGCAATTACTGGAATACTGAAATGAATGCTTACAGTTT
ACTTAAAGCTTCACTTCAGCTGATGCGCATTCACATCAGGTTTTCAGATCTTATGCTACACTAAT
AGGTTTAGACAACAACGTGTCAGCAACAGCAAGGTTTGTTTGTTTTCTTATCTATAACTAATGAC
GAGCTTATGCGCCAACCTGAAGCTTAGCACCAGATAACCAAAGAA



Found at i:819062 original size:19 final size:19

Alignment explanation


    Indices: 819038--819075  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

     819028 AAGAGCTAGA

                   * *         
     819038 AACAAGCTAGGGATGAGCG
          1 AACAAGCAACGGATGAGCG

                               
     819057 AACAAGCAACGGATGAGCG
          1 AACAAGCAACGGATGAGCG

     819076 CGCTAGCGCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.39, C:0.18, G:0.34, T:0.08


Consensus pattern (19 bp):   
AACAAGCAACGGATGAGCG

Left flanking sequence: Indices 818538 -- 819037
GCAGAGGGGGCCGGCGAATGCAACACTAGTAAAGCAAGCAATCTGTAGCTACAGCAAGGGAGTTT
GCTTGAAGAACTAAAGAGAGTATTGCATGCATAGGAGAGTATTGCGAAAGCGTAGGCAAAGAAGC
AATGGGAGCAGCAATCGCACACTTCTAACTTCCCATACATCCATCTAAAAACCTTTCTCGGTGAC
AGATGTTATTGATCAAGCCATCCCTGGACAAGCACGCGTCCGTACGGTATAACAGGACCTTAGCT
ATCTAGTGAAATAAAGGGCATACTTTGCTTGTTTCGTGGTATGGACCCCTGAATGGGTAAGGCAA
GCCAGTGAAGTCCTTATTACTGAGTCCAACCCTTCTACTAAGCTAAGCCAGTGATACCCTTTTCA
ACTTTGCCCATTTTGGTGCACGCACGAACGAATTCGTCAATCTGACATTATAGCTTTGCCTTTTT
TAAAGATATGCGATATAAGCAGCTAGAAAGAAGAGAAGAGCTAGA


Right flanking sequence: Indices 819076 -- 819575
CGCTAGCGCTACCAGCCCCAGTTCGTGTTAATTGCGTTAGCCTTTACATATATAGGGCGTTTTCT
TGCTTCACGCGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTCTTGCTGCG
TTGAACATACAGAATTTAGGCATTCCATACCCCAGCGGAAATGGTAGACTATCGATCCAAGCCGG
ATAGGGTTTACGAGACCGATAAGATAGACGAGACCAAGAAGAAGAAAAGAAAGCGCAACTATACT
AGGCGATCAATTGTATATGAGACCCCACCGCATATCAAAATGTTCAAAGGTAGCTTCTTGCAACT
GAGCAAGTCAGATGCCTATTCCTTTCTGGAGAGTTTGGCAGAGAGAACCCCAGCAATGGGACTTC
TCTAGTTTCAGAGACAGACCTACTACTCAAAAGAAAGGAGGTTTGTATTCAGTCCGGGATGATGT
CAAAGCTAGGATAGAAGCTCTCAACCGTAAGGTAGAGGATCTGGT


Done.