123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_071219
Parameters: 2 7 7 80 10 50 500
Length:  824625

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32520--32561	12	3.4	12	81	15	50	4	19	23	52	1.65
35449--35479	15	2.1	15	93	0	53	32	29	32	6	1.83
40572--40614	18	2.3	18	84	4	50	53	6	27	11	1.63
53750--53775	13	2.0	13	100	0	52	15	15	23	46	1.83
54999--55023	13	1.9	13	100	0	50	12	0	0	88	0.53
55541--55585	22	2.0	22	100	0	90	24	13	4	57	1.54
55575--55603	14	2.0	15	93	6	51	34	0	0	65	0.93
73845--73910	34	2.0	33	96	3	123	24	24	6	45	1.75
87628--87670	22	2.0	21	86	4	59	48	25	16	9	1.75
108286--108349	32	2.0	32	100	0	128	28	15	15	40	1.88
131786--131823	19	2.0	19	89	0	58	7	34	18	39	1.80
216262--216300	19	2.1	19	100	0	78	5	33	20	41	1.74
230573--230614	21	2.0	21	100	0	84	47	9	14	28	1.75
248669--248693	9	2.8	9	100	0	50	76	0	0	24	0.80
259011--259045	18	1.9	18	94	0	61	42	25	20	11	1.85
273062--273093	15	2.1	15	100	0	64	12	12	0	75	1.06
278314--278359	18	2.3	21	71	21	53	19	39	13	28	1.89
297159--297201	18	2.4	18	81	18	54	18	20	25	34	1.96
310244--310322	39	2.0	39	97	0	149	21	27	18	31	1.97
327055--327087	5	6.6	5	92	0	57	60	0	36	3	1.12
371406--371439	17	2.0	17	94	0	59	11	26	26	35	1.91
371462--371518	17	3.4	17	92	0	87	10	24	26	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371659--371692	17	2.0	17	100	0	68	47	17	23	11	1.81
371653--371716	22	3.1	22	80	19	84	39	18	29	12	1.88
371882--371959	42	1.9	41	87	10	115	10	32	26	30	1.90
371884--371978	42	2.3	41	82	10	104	10	27	29	32	1.90
372007--372046	17	2.4	17	100	0	80	12	20	22	45	1.84
374253--374288	18	2.0	18	88	0	54	36	16	2	44	1.63
410822--410861	17	2.4	17	100	0	80	45	22	20	12	1.84
410890--410985	42	2.3	42	82	10	108	32	29	28	10	1.90
411152--411215	22	3.1	22	76	23	84	12	29	18	39	1.88
411176--411209	17	2.0	17	100	0	68	11	23	17	47	1.81
411350--411406	17	3.4	17	92	0	87	38	26	24	10	1.88
411429--411462	17	2.0	17	94	0	59	35	26	26	11	1.91
416161--416202	7	6.0	7	78	10	50	66	2	28	2	1.16
420082--420129	24	2.0	24	87	0	69	25	27	18	29	1.98
444432--444473	12	3.4	12	81	15	50	4	19	23	52	1.65
447361--447391	15	2.1	15	93	0	53	32	29	32	6	1.83
452484--452526	18	2.3	18	84	4	50	53	6	27	11	1.63
465662--465687	13	2.0	13	100	0	52	15	15	23	46	1.83
466911--466935	13	1.9	13	100	0	50	12	0	0	88	0.53
467453--467497	22	2.0	22	100	0	90	24	13	4	57	1.54
467487--467515	14	2.0	15	93	6	51	34	0	0	65	0.93
524858--524883	13	2.0	13	100	0	52	7	15	23	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530761--530821	24	2.5	24	100	0	122	29	6	34	29	1.83
571837--571933	9	10.8	9	93	0	167	62	11	14	11	1.54
571837--571937	18	5.6	18	98	0	184	61	11	14	11	1.57
586455--586499	18	2.4	18	85	3	54	13	26	6	53	1.64
595803--595865	31	2.0	31	100	0	126	50	11	15	22	1.75
610875--610995	64	1.9	63	91	1	197	36	23	21	19	1.95
667027--667172	79	1.9	78	84	6	201	33	28	29	8	1.86
667003--667172	37	4.3	39	82	9	186	33	27	30	8	1.87
691816--691850	18	1.9	18	94	0	61	11	20	25	42	1.85
702168--702192	9	2.8	9	100	0	50	24	0	0	76	0.80
720247--720288	21	2.0	21	100	0	84	28	14	9	47	1.75
724595--724640	21	2.0	24	84	12	62	36	21	13	28	1.91
724595--724641	24	2.0	24	86	0	67	36	21	12	29	1.91
734561--734599	19	2.1	19	100	0	78	41	20	33	5	1.74
746274--746331	28	2.0	29	90	9	93	18	37	17	25	1.93
811884--811941	27	2.2	27	84	3	73	29	20	24	25	1.99
819038--819075	19	2.0	19	89	0	58	39	18	34	7	1.80

Tables:   1

The End!